BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] (83 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040824|gb|ACT57620.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 83 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST Sbjct: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 INIDNMIILAHTLDTPLWKLLKP Sbjct: 61 INIDNMIILAHTLDTPLWKLLKP 83 >gi|315122539|ref|YP_004063028.1| transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495941|gb|ADR52540.1| transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 83 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 75/83 (90%), Positives = 80/83 (96%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRR++DE HLS+ ILRERMIFVNNFRN RKEAK+TQKEIRNRTGFAQSWISELETGKST Sbjct: 1 MPRRRKDESHLSNTILRERMIFVNNFRNTRKEAKITQKEIRNRTGFAQSWISELETGKST 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 INIDNMIILAHTL+TPLWKLLKP Sbjct: 61 INIDNMIILAHTLNTPLWKLLKP 83 >gi|325919535|ref|ZP_08181552.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549984|gb|EGD20821.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 85 Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 2/85 (2%) Query: 1 MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 MP R R D + ER+IF FR RK AKL+Q+ IR+RTGF Q+WIS +ETGK Sbjct: 1 MPGRPRAADSHQDPKPVPVERLIFARKFRQARKAAKLSQRGIRDRTGFTQAWISAVETGK 60 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 S N+D+M +LA + PLWKLL P Sbjct: 61 SAPNLDSMAVLAKCVGVPLWKLLVP 85 >gi|325917597|ref|ZP_08179796.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325536194|gb|EGD07991.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 85 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 2/85 (2%) Query: 1 MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 MP R R D + ER+IF NFR RK AKL+Q+++R+RTG +SWIS +ETGK Sbjct: 1 MPGRPRAADSHQDPKPVPVERLIFARNFRQARKAAKLSQRDVRDRTGLTRSWISNIETGK 60 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 S N+DNM +LA + PLWKLL P Sbjct: 61 SPPNLDNMAMLAKCVGVPLWKLLVP 85 >gi|10956712|ref|NP_061657.1| transcriptional regulator [Xylella fastidiosa 9a5c] gi|9112239|gb|AAF85570.1|AE003851_1 transcriptional regulator [Xylella fastidiosa 9a5c] Length = 86 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 40/70 (57%), Positives = 51/70 (72%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A+ ER+IF NFRN R AKL+Q+EI +TG Q+WIS +E G+STI+IDNM LA + Sbjct: 15 AVEPERLIFGRNFRNARNMAKLSQREIAEKTGLTQNWISMVENGRSTISIDNMAKLAKCV 74 Query: 74 DTPLWKLLKP 83 + PLWKLL P Sbjct: 75 NVPLWKLLIP 84 >gi|114326578|ref|YP_743737.1| XRE family transcriptional regulator [Nitrosomonas eutropha C91] gi|114309517|gb|ABI60759.1| transcriptional regulator, XRE family [Nitrosomonas eutropha C91] Length = 85 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 45/65 (69%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF NFR+ R+ A+LTQ +I TG + +IS++E GK +I++D M +LA+ + PLW Sbjct: 15 RFIFGRNFRHARRAAELTQCDITRITGVMRGYISKVECGKVSISVDKMEVLANAVKVPLW 74 Query: 79 KLLKP 83 KLL P Sbjct: 75 KLLTP 79 >gi|312113854|ref|YP_004011450.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218983|gb|ADP70351.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 101 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 2 PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P+RKR P L+ ER IF N R R +A L+Q+E+ TG AQ+ ISELE Sbjct: 16 PKRKRALPVLAKKRAPDSQPEREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENA 75 Query: 58 KSTINIDNMIILAHTLDTPLWKLLKP 83 + ID M+ LA + PL+++ +P Sbjct: 76 MHNVCIDTMVKLAQAVKKPLFQMFQP 101 >gi|32442173|gb|AAP82048.1| putative mating pair formation protein [Stenotrophomonas maltophilia] Length = 98 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F NFR R A LTQK+I + G Q ++SE+E G S I++DNM +LA + PLW LL Sbjct: 38 FAKNFRAARIRAGLTQKDICEKAGLTQPYLSEVERGLSNISLDNMEVLAGLVHKPLWVLL 97 Query: 82 K 82 + Sbjct: 98 R 98 >gi|312115518|ref|YP_004013114.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220647|gb|ADP72015.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 101 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 2 PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P+RKR P L+ ER IF N R R +A L+Q+E+ TG AQ+ ISELE Sbjct: 16 PKRKRALPVLAKKRAPDSQPEREIFARNLRKSRIDAGLSQRELAAVTGIAQAHISELENA 75 Query: 58 KSTINIDNMIILAHTLDTPLWKLLKP 83 + ID M+ LA + PL+++ +P Sbjct: 76 MHNVCIDTMVKLAQAMRKPLFQMFQP 101 >gi|312114516|ref|YP_004012112.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219645|gb|ADP71013.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 101 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 40/66 (60%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER IF N R R +A L+Q+E+ TG AQ+ ISELE + ID M+ LA + PL Sbjct: 36 EREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENAMHNVCIDTMVKLAQAVKKPL 95 Query: 78 WKLLKP 83 +++ +P Sbjct: 96 FQMFQP 101 >gi|27802476|gb|AAO21114.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 72 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA LD Sbjct: 4 RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVSHV 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELVRP 68 >gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] Length = 118 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ +F R IRK+ +TQ E+ +TG A +IS +ETGK+ +++D + L + D P Sbjct: 8 DKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLVNAFDVP 66 >gi|300309363|ref|YP_003773455.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072148|gb|ADJ61547.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 89 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 42/64 (65%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+IF N R +R+ +++Q+E+ R +++++SE+E G+ I++DNM LA L+ L Sbjct: 11 RLIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEMELP 70 Query: 79 KLLK 82 LL+ Sbjct: 71 DLLR 74 >gi|296314733|ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC 43768] gi|296838467|gb|EFH22405.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC 43768] Length = 81 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 41/64 (64%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+IF N R +R+ +L+Q+E+ ++++ISE+E G +++ID M +A L PL Sbjct: 11 RLIFAQNMRQVRRLKELSQEELAFSARVSKTYISEIERGSRSVSIDVMGQIADALGMPLE 70 Query: 79 KLLK 82 +L++ Sbjct: 71 ELVR 74 >gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520] Length = 154 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 QLLAP 70 >gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 154 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 QLLAP 70 >gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 185 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 37 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96 Query: 79 KLLKP 83 +LL P Sbjct: 97 QLLAP 101 >gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B] gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1] Length = 185 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 37 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96 Query: 79 KLLKP 83 +LL P Sbjct: 97 QLLAP 101 >gi|222087821|ref|YP_002546359.1| hypothetical protein Arad_4804 [Agrobacterium radiobacter K84] gi|221725269|gb|ACM28425.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 72 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+KP Sbjct: 64 ELVKP 68 >gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 72 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ++++ R+GF+Q +IS LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELVRP 68 >gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 78 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 +D H D LR++ + + R R+ ++Q+ + + G +++I ++E G+ I+IDN Sbjct: 3 KDSKHSDDVSLRQK--YGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGERNISIDN 60 Query: 66 MIILAHTLDTPLWKLLKP 83 + LA + LW++L+P Sbjct: 61 LERLADAVGEQLWEMLRP 78 >gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 154 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 QLLAP 70 >gi|34496512|ref|NP_900727.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102366|gb|AAQ58732.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 87 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L R +F N R R+ ++Q+ + + G +++++SE+E G+ ++IDNM LA L Sbjct: 8 LTARAVFARNLRIARRLHDVSQEALALQAGMSRTYVSEIERGERNVSIDNMGALADALGV 67 Query: 76 PLWKLLKP 83 L L+ P Sbjct: 68 ALRDLVDP 75 >gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+GF+Q ++S LE G+ + + LA L Sbjct: 2 RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 61 Query: 79 KLLKP 83 +L KP Sbjct: 62 ELFKP 66 >gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13] gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13] gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13] Length = 75 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L KP Sbjct: 64 ELFKP 68 >gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dJ gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] Length = 77 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELVTP 68 >gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 72 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELVSP 68 >gi|329120702|ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327460499|gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 82 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RMIF N R IR+ +++Q+E+ ++ +I E+E G + ID M ++ L+ PL Sbjct: 12 RMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMGRISDALEVPLD 71 Query: 79 KLL 81 KLL Sbjct: 72 KLL 74 >gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 72 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + L+ L Sbjct: 4 RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHV 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELVQP 68 >gi|332296775|ref|YP_004438697.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332179878|gb|AEE15566.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + N + IR KL Q E+ + G + ++S+LETG+S+ + D ++ LA L ++LL Sbjct: 7 YAANIKKIRIAKKLNQAELAEKLGLSVKYVSDLETGRSSGSFDTLVNLADALGVEPYELL 66 Query: 82 KP 83 P Sbjct: 67 LP 68 >gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427] gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 ++ + +RKE K++QKE+ +G + S+I ++E+G K+ +++ + +A LDTP++ Sbjct: 1 MYGEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYH 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 4 RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 63 Query: 79 KLL 81 +LL Sbjct: 64 RLL 66 >gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933] gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str. TW14359] gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933] gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str. EC1212] gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str. 1125] gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str. 1044] Length = 154 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 RLL 68 >gi|13474794|ref|NP_106364.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] gi|14025550|dbj|BAB52150.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] Length = 75 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+G++Q ++S LE G+ + + L+ L Sbjct: 7 RQLVGTNFARLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHV 66 Query: 79 KLLKP 83 +L+KP Sbjct: 67 ELVKP 71 >gi|116331369|ref|YP_801087.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125058|gb|ABJ76329.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 114 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER F N R R E LTQ ++ R G QS+IS++E+GK + I++ I L + P Sbjct: 46 ERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCELYNKP 104 >gi|167855653|ref|ZP_02478411.1| probable transcriptional regulator [Haemophilus parasuis 29755] gi|219871715|ref|YP_002476090.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167853225|gb|EDS24481.1| probable transcriptional regulator [Haemophilus parasuis 29755] gi|219691919|gb|ACL33142.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 86 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F NN R IR+ ++Q+ + ++++IS++E GK I+ID M +A LD L Sbjct: 12 RHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRAISIDAMGKIADALDVNLV 71 Query: 79 KLLK 82 LLK Sbjct: 72 DLLK 75 >gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] Length = 72 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 37/59 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N R +R+ L+Q+++ + +++I +E G+ +++DN++ +AH L P KLL+ Sbjct: 11 SNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHALGVPASKLLE 69 >gi|116327819|ref|YP_797539.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120563|gb|ABJ78606.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 114 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER F N R R E LTQ ++ R G QS+IS++E+GK + I++ I L + P Sbjct: 46 ERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCELYNKP 104 >gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] Length = 154 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 230 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 39/65 (60%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R +R + L+Q+++ + G ++++SE+E GK +++DN+ LA+ L Sbjct: 5 RTLLAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQVEAA 64 Query: 79 KLLKP 83 KL+ P Sbjct: 65 KLVSP 69 >gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 152 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA S++S +E G S ++D + +LA+ L W Sbjct: 4 RKLFGQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEPW 63 Query: 79 KLL 81 +LL Sbjct: 64 QLL 66 >gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ A L+ E+ R+G A+ +S+LE+G I+ + L++ L P+ L Sbjct: 9 VLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 68 Query: 81 L 81 L Sbjct: 69 L 69 >gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] Length = 154 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L+ W Sbjct: 6 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 RLL 68 >gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B] Length = 150 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 2 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 61 Query: 79 KLL 81 +LL Sbjct: 62 QLL 64 >gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 154 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L+ W Sbjct: 6 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 RLL 68 >gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli UM146] Length = 154 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89] gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89] Length = 154 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] Length = 166 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 18 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 77 Query: 79 KLL 81 +LL Sbjct: 78 QLL 80 >gi|111222160|ref|YP_712954.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149692|emb|CAJ61384.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 100 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ LTQ+++ +R G ++ +++LE+G + I++ +I+A LD L +LL P Sbjct: 31 LRAIRQLRGLTQQQVADRCGLTRTAVTDLESGRRRDISLGQALIIASALDVDLGRLLDP 89 >gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4] gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4] Length = 226 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R R A L+ E+ R G A+S +S+LE+G +++ + L LD P +L Sbjct: 51 IIAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGNPSVETLWALGVALDVPFSRL 110 Query: 81 LKP 83 ++P Sbjct: 111 VEP 113 >gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 73 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+ LTQ+++ R+GF+Q +IS LE G+ I + LA L Sbjct: 4 RRLVGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELITP 68 >gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 192 Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ A L+ E+ R+G A+ +S+LE+G I+ + L++ L P+ L Sbjct: 1 MLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 72 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+GF+Q +IS LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63 Query: 79 KLLKP 83 +L++ Sbjct: 64 ELVRA 68 >gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280] gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280] Length = 154 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + R L+Q+ +R GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RYLFGQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 153 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F + +R ++Q+ + GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RILFGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 104 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK A LTQ E+ +TGF IS ETG T +++ + +LA+ LD L Sbjct: 11 RRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQL 61 >gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R R A L+ E+ R G A+S +S+LE+G +++ + L LD P +L Sbjct: 26 IIAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGNPSVETLWALGVALDVPFSRL 85 Query: 81 LKP 83 ++P Sbjct: 86 VEP 88 >gi|307324784|ref|ZP_07603990.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889666|gb|EFN20646.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 187 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R E LT + R+G A+ ISELE G+ I+ + LA+ L+ L L Sbjct: 7 VVAGNLQRLRGERGLTLAALAARSGVAKGTISELERGRGNPTIETLFALAYALEATLADL 66 Query: 81 LK 82 ++ Sbjct: 67 VE 68 >gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 187 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + + R R A L+ E+ R G A+S +S+LE+G +++ + L LD P Sbjct: 10 QAVIAASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGNPSLETLWALCVALDMPFS 69 Query: 79 KLLKP 83 +LL P Sbjct: 70 RLLDP 74 >gi|24215545|ref|NP_713026.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657075|ref|YP_001161.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196688|gb|AAN50044.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600312|gb|AAS69798.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 98 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 31/47 (65%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RE IF N RK+A LTQ E+ NR G QS+IS++E+G+ +++ Sbjct: 8 REAKIFCKNLIAARKDAHLTQLEVANRLGEPQSYISKIESGERRLDV 54 >gi|326385864|ref|ZP_08207491.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326209653|gb|EGD60443.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R++ LTQ+++ R+GF+Q ++S LE G+ + + L+ L Sbjct: 4 RKLVGRNFARLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|149916994|ref|ZP_01905495.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149822272|gb|EDM81663.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 130 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +SDA LRE + V R R E L+Q+E+ R G A + IS+LET + + ++D + +A Sbjct: 1 MSDAGLRESLAEV--VRGRRAELGLSQRELAKRAGVADATISKLETQQLSPSLDTLAKIA 58 Query: 71 HTLDTPLWKLLK 82 LD + L+ Sbjct: 59 AGLDLDVAALIS 70 >gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus] Length = 185 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R EA L+ E+ R+G + ISELE G+ T +D + L L PL Sbjct: 15 LRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPL 66 >gi|317055988|ref|YP_004104455.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315448257|gb|ADU21821.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 179 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R E LTQ E+ RTG ++S+IS+ +GK D + ILA L T LL Sbjct: 4 FAENLRTAMAERSLTQAELSKRTGISKSFISQYLSGKFKPREDKLSILAQALGTTKGALL 63 >gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 224 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 44/72 (61%), Gaps = 2/72 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++DA L+ +F ++ R E ++Q+E+ +R G ++++S++E G +++ ++ LA Sbjct: 1 MTDADLKS--LFGTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGMRNVSLISIEKLA 58 Query: 71 HTLDTPLWKLLK 82 H L +W+L + Sbjct: 59 HALGLSVWRLFE 70 >gi|152983227|ref|YP_001352681.1| subunit S of type I restriction-modification system [Janthinobacterium sp. Marseille] gi|151283304|gb|ABR91714.1| subunit S of type I restriction-modification system [Janthinobacterium sp. Marseille] Length = 78 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +++F +N R IR E TQ+ + +++S +E G+ I+I N+ +A LD P+ Sbjct: 13 QLLFASNIRRIRLEKGFTQERVAELADLHTNYVSSVERGERNISICNIERIAFALDVPMS 72 Query: 79 KLLKP 83 +LL+ Sbjct: 73 RLLEA 77 >gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205] gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205] Length = 224 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINI 63 +N ++IRK K+TQKE+ ++G QS IS+LETG KST +I Sbjct: 10 DNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAKSTGSI 51 >gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR+ A L+ + +G A+ +S+LE+G I+ + L++TL P+ LL Sbjct: 10 LAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVSSLL 69 >gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 68 Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I R+ RK LTQKE+ + G ++S +++ E+GK + ID ++ +A+ L Sbjct: 5 KQITSTQIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFS 64 Query: 79 KLL 81 LL Sbjct: 65 TLL 67 >gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703] Length = 178 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L+ W Sbjct: 30 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALNVEPW 89 Query: 79 KLL 81 + Sbjct: 90 QFF 92 >gi|304394885|ref|ZP_07376769.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357138|gb|EFM21501.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 182 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R+ A L+ E+ R G A+S +S+LE G I+ + L TL+ P +L Sbjct: 7 IIANALVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 72 Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+ LTQ+++ R+G +Q ++S LE G+ I + LA LD Sbjct: 4 RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELVLP 68 >gi|240950283|ref|ZP_04754558.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240295185|gb|EER45993.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 88 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R IF N R IR+ ++Q+ + ++++I E+E G+ +++ID M +A TL+ Sbjct: 11 RLRYIFAKNMRRIRRWKDISQEALALNANVSRTYIGEIERGERSVSIDVMGKIADTLEVE 70 Query: 77 LWKLLKP 83 L +L+K Sbjct: 71 LSELVKE 77 >gi|322513230|ref|ZP_08066356.1| DNA-binding protein [Actinobacillus ureae ATCC 25976] gi|322121006|gb|EFX92847.1| DNA-binding protein [Actinobacillus ureae ATCC 25976] Length = 86 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F NN R IR+ ++Q+ + ++++IS++E GK +ID M +A L+ L Sbjct: 12 RHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRATSIDAMGKIADALNVSLI 71 Query: 79 KLLKP 83 LLK Sbjct: 72 DLLKS 76 >gi|197303928|ref|ZP_03168960.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC 29176] gi|197296896|gb|EDY31464.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC 29176] Length = 77 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 37/55 (67%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R+ + R IR++ K++Q+E+ + G +++IS++E GK ++++N+ +AH L Sbjct: 6 RVAYGKAVRAIRQDKKISQEELGDLCGLHRTYISDIELGKRNVSLENIDKIAHAL 60 >gi|332827315|gb|EGK00080.1| hypothetical protein HMPREF9455_03604 [Dysgonomonas gadei ATCC BAA-286] Length = 72 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 37/57 (64%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+E K++Q E+ R + +S +S +E+GK+ + I ++ +A +LDT + ++ Sbjct: 13 NIKKIREEKKISQAELAARCNYEKSNMSRIESGKTNLTIGTLLNIAESLDTTIIHIV 69 >gi|237739116|ref|ZP_04569597.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423716|gb|EEO38763.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 187 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIRK KL KE+ ++ G + S +S++E G + +++ + +A L+ PL+K Sbjct: 13 IKNIRKSKKLLLKEVASKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 68 >gi|148263207|ref|YP_001229913.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146396707|gb|ABQ25340.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 77 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N RN R + +Q+E+ + G +++I +E G+ + + + +LA TL + Sbjct: 9 RAILAENIRNFRHKKNFSQEELAEKCGLHRTYIGSVERGERNVTLSTLEVLASTLGVSVP 68 Query: 79 KLL 81 +LL Sbjct: 69 ELL 71 >gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E F + + RK K+T KE+ + S +S++E G + +I+ M ++A+ LD PL Sbjct: 7 EENTFYSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANALDVPL 66 Query: 78 WKLL 81 +K Sbjct: 67 FKFF 70 >gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 178 Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 38/56 (67%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRK+ +T ++I +TGF +S+IS++E GK++ +I ++ + + L T + +L + Sbjct: 8 REIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISELFE 63 >gi|328882934|emb|CCA56173.1| hypothetical protein SVEN_2887 [Streptomyces venezuelae ATCC 10712] Length = 62 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R+ R A LTQ+ + +G A++ I E+E+G++ +D +++LA + P L Sbjct: 1 MFGARVRDARMYANLTQQRVGELSGLARATIQEIESGRAAPTVDTVLLLADAIGVPPGVL 60 Query: 81 LK 82 + Sbjct: 61 FE 62 >gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51] gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 123 Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 R IRK+ KL+ E+ +G A+S IS+LE+GK + +ID + LA L+ + LL Sbjct: 7 QLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVASLL 64 >gi|256821176|ref|YP_003142375.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799156|gb|ACV29810.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 78 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + R E L+Q+ ++GF +++IS LE K +I +DN+ +A L+ + L Sbjct: 6 VFSKNVKKYRNEMGLSQEAFAEKSGFYRTYISALECKKRSIALDNVQKIADALEIETYLL 65 Query: 81 L 81 Sbjct: 66 F 66 >gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 195 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R A L+ E+ R G A+S +S+LE+G +++ + L TLD P +LL P Sbjct: 25 LRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGNPSLETLWALCVTLDVPPSRLLDP 82 >gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 219 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 M + +PH++ A RE+++ V R+ RK+ ++T E+ + TG + +S++E G Sbjct: 10 MVTKLSQDPHVTSAGEREKVLEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIENG 69 Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82 ++ ++ + LA+ L PL + Sbjct: 70 NTSPSLSTLQTLANALSVPLTSFFR 94 >gi|325299767|ref|YP_004259684.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319320|gb|ADY37211.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 103 Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 8 EPHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 E LS A E+ + + RN RKE K+TQK++ + G QS+I+ +E G+ + + Sbjct: 26 EGTLSRAEFHEKAMAWYYGEILRNRRKELKMTQKQLAQKIGKEQSYIARVEKGEVDMQLS 85 Query: 65 NMIILAHTLDTPL 77 + +AH L+ L Sbjct: 86 SFFRIAHALNIEL 98 >gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R A L+ E+ R G A+S +S+LE+G +++ + ++ TLD P +L+ Sbjct: 19 IAASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGNPSVETLWAISVTLDVPFSRLV 78 Query: 82 KP 83 P Sbjct: 79 DP 80 >gi|83950962|ref|ZP_00959695.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83838861|gb|EAP78157.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 83 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D I R N RN RK KLTQ E+ +R+G Q IS +ET S +D + L Sbjct: 2 DQIARSPKDVGNALRNARKAKKLTQAELASRSGIWQRTISTIETSASGAKLDTIFDLLAA 61 Query: 73 LD 74 LD Sbjct: 62 LD 63 >gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 197 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 +L+D + M N R +RK LT E+ R G + +IS++E G S+ +ID++ L Sbjct: 7 NLADLNASDAMALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDLRAL 66 Query: 70 AHTLDTPL 77 A D P+ Sbjct: 67 AAAFDVPI 74 >gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] Length = 383 Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +NIRK +TQ + G ++S+I +LE +S +I + +A LD P+ L+ Sbjct: 131 NNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 188 >gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] Length = 72 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F RN+RK+A ++Q+E+ +R G ++++ +E G+ ++ N+ ++ L P+ L Sbjct: 11 FGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALKVPVSDLF 70 Query: 82 K 82 K Sbjct: 71 K 71 >gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 184 Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R R+ + ++ E+ R G A+S +S+LE+G +++ + L LD P+ +LL P Sbjct: 13 SLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQLLDP 71 >gi|260888382|ref|ZP_05899645.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838303|ref|YP_004412883.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260861918|gb|EEX76418.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329746067|gb|AEB99423.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 98 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + RK KLTQKE+ RTG +Q+ IS +ETG++ ++ M LA L L + Sbjct: 30 LIRSLLEARKVTKLTQKELSARTGISQADISRIETGEANPSMQTMKRLAEGLGMQLRVMF 89 Query: 82 KP 83 P Sbjct: 90 VP 91 >gi|167571316|ref|ZP_02364190.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 100 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 38/59 (64%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R+ R++ L+Q+++ + G ++++S++E I++DN+ LA L+T + LLKP Sbjct: 18 NLRDQRQQRGLSQEKLADEAGLHRTYVSQVERTIVNISLDNLTKLADALETDVHLLLKP 76 >gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 186 Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R+ A L+ E+ R G A+S +S+LE+G +++ + L LD P +L++P Sbjct: 16 LRRERERAGLSLTELARRAGIAKSTLSQLESGSGNPSVETLWALGVALDVPFSRLVEP 73 >gi|50365272|ref|YP_053697.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1] gi|50363828|gb|AAT75813.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1] Length = 75 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N R IR LTQ+E+ R G ++++IS+ E G+ I I + L L+T + Sbjct: 12 LIIAANLRKIRSSKGLTQEELGFRCGISKNYISDFERGRRNITIKILQKLIEGLETTPQE 71 Query: 80 LLKP 83 LLK Sbjct: 72 LLKA 75 >gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2] Length = 183 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ AI RER+ A L+ E+ R G +S +S LE G +++ M LA Sbjct: 9 IAAAIKRERL-----------RADLSLSEVARRAGIGKSTMSGLEAGTGNPSVETMWALA 57 Query: 71 HTLDTPLWKLLKP 83 LD PL +LL P Sbjct: 58 AALDIPLARLLDP 70 >gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 181 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410] gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410] gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 460 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +NIRK +TQ + G ++S+I +LE +S +I + +A LD P+ L+ Sbjct: 208 NNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 265 >gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf] gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf] gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 181 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 181 Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 181 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 35/58 (60%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R++ LT E+ R G +++ +S++E +++ ++ + +LA LD P+ L + Sbjct: 36 NVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSLSTLALLAKGLDVPVTSLFR 93 >gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 113 Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F + +RK+A LTQ E+ R G QS ++ E GK +N++ +A LD + Sbjct: 1 MAFAERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSI 58 >gi|330897368|gb|EGH28787.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 286 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 RK D A +RM F + + R+ AKL Q E+ R G Q+ IS+LE GKS Sbjct: 51 RKTDLQGYGSARNTQRMEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKS 106 >gi|77919382|ref|YP_357197.1| helix-turn-helix transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545465|gb|ABA89027.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 124 Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 29/43 (67%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 LTQ+E+ +R G ++ ++S++E+GK ++ + +A LD PL Sbjct: 77 LTQQELADRAGISKPYLSQIESGKRQGTVETLAAIARALDVPL 119 >gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 86 Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE LTQ+ + +RTG +++I+ +ETGK I++ N+ LA L L L K Sbjct: 23 RKELNLTQENLAHRTGLDRTYIANIETGKINISLRNIEKLAKGLSISLSDLFK 75 >gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 150 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +RKE KLTQKE+ QS IS E+ K ++D M+ +A D P+ +L+ Sbjct: 4 FGDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQELI 63 >gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] Length = 181 Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 35/56 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 10 RNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|90425389|ref|YP_533759.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107403|gb|ABD89440.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 84 Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +RKE TQ+ +GF Q ++S LE GK + + LA L Sbjct: 4 RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLIQP 68 >gi|293603331|ref|ZP_06685759.1| type I restriction-modification system S subunit [Achromobacter piechaudii ATCC 43553] gi|292818241|gb|EFF77294.1| type I restriction-modification system S subunit [Achromobacter piechaudii ATCC 43553] Length = 85 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 40/65 (61%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +++F N R IRKE +LTQ+++ R G +++S +E G+ ++I N+ +A L + Sbjct: 21 QVLFAANMRRIRKEKQLTQEQVAERAGLHPNYVSSVERGERNLSIANIARIAAALGVTMA 80 Query: 79 KLLKP 83 +L+ P Sbjct: 81 ELVTP 85 >gi|115526032|ref|YP_782943.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519979|gb|ABJ07963.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 84 Score = 41.2 bits (95), Expect = 0.041, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +RKE TQ+ +GF Q ++S LE GK + + LA L Sbjct: 4 RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLIQP 68 >gi|53718395|ref|YP_107381.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52208809|emb|CAH34748.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 102 Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 A LR R+ N + IR ++Q+E+ +R G +++IS++E + +++DN+ +LA Sbjct: 8 GQAALRNRL--SRNLKRIRAAQNISQEELGDRAGLHRTYISQVERTVTNVSLDNIYLLAE 65 Query: 72 TLDTPLWKLL 81 L +LL Sbjct: 66 ALGVDPAELL 75 >gi|284044649|ref|YP_003394989.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948870|gb|ADB51614.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 80 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 39/72 (54%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +++ + RER R +R L Q+E+ G +++++ LE+G++ + D ++ +A Sbjct: 1 MAEPLHRERRALAIAVRELRARRALKQEEVGEAAGLGRNYLTTLESGRTNPSFDALVRIA 60 Query: 71 HTLDTPLWKLLK 82 L PL +L + Sbjct: 61 SGLGVPLSELTR 72 >gi|302880116|ref|YP_003848680.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582905|gb|ADL56916.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 73 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F N R R + +Q+++ +G ++++ +E G+ I+IDNM LA+ + L Sbjct: 10 RLRFSKNLREARLRREWSQEDLAEESGLHRTYVGSVERGERNISIDNMECLANAVGVELI 69 Query: 79 KLLK 82 LLK Sbjct: 70 DLLK 73 >gi|261819878|ref|YP_003257984.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603891|gb|ACX86377.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 103 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R R +Q+E+ R+G QS IS++E+G + + ++I LA LD L+ Sbjct: 8 ILESLREARARKGFSQRELSARSGVPQSHISKIESGGVDLRVSSLIALARVLDLELF 64 >gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 108 Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +++R+E KLTQ++I + G +S IS E+GK +++ +N+I A D + + Sbjct: 3 MFGQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYI 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 115 Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK LTQ+++ G ++S+ISE+E+GK + + AHT++ P+ L++ Sbjct: 5 LKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIE 61 >gi|298717105|ref|YP_003729747.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361294|gb|ADI78075.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 182 Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R+ + L+ E+ R G A+S +S+LE G I+ + L TL+ P +L Sbjct: 7 IIANALVRERQRSGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|212640061|ref|YP_002316581.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561541|gb|ACJ34596.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 81 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN R+IR L+Q+E+ +G +++I +E G+ I I N+I +A+ L+ + L Sbjct: 13 IIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIKIANALEVRVQDL 72 Query: 81 L 81 L Sbjct: 73 L 73 >gi|39935312|ref|NP_947588.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649164|emb|CAE27684.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] Length = 81 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RN R+ +L+Q+E+ +R +++IS LE +ID + LAH L Sbjct: 4 REVLALNLRNCRQAQELSQEELAHRAEIDRTYISSLERCVYAASIDVLDRLAHVLGVEAA 63 Query: 79 KLLK 82 LL+ Sbjct: 64 DLLR 67 >gi|242278893|ref|YP_002991022.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121787|gb|ACS79483.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 107 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IRK+ LTQ ++ N + +ISE+E G S + +D + +A+ L P+ +L Sbjct: 10 NKIRSIRKKRGLTQAQLGNESDLNDKYISEIERGSSKLTVDALNKIANGLKVPVKDIL 67 >gi|302518782|ref|ZP_07271124.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302427677|gb|EFK99492.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 77 Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L +R + R R EA +TQ+ + RTG + I E+G + +D+++++AH L Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIAHALG 69 Query: 75 TPLWKLLK 82 L L+ Sbjct: 70 RSLADLIS 77 >gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 68 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + +R+E LTQ+ + +R+G +Q ++S LE GK I + ++ L +LL+P Sbjct: 5 NLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLELLRP 63 >gi|318061628|ref|ZP_07980349.1| hypothetical protein SSA3_27058 [Streptomyces sp. SA3_actG] Length = 77 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L +R + R R EA +TQ+ + RTG + I E+G + +D+++++A L Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIARALG 69 Query: 75 TPLWKLLK 82 PL L+ Sbjct: 70 RPLADLVS 77 >gi|325678958|ref|ZP_08158556.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109462|gb|EGC03680.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 181 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R E LTQ E+ RTG ++S+IS+ +GK D + LA L T LL Sbjct: 4 FAENLRAAMAERSLTQAELSKRTGISKSFISQYLSGKFKPRDDKLSALAQALGTTKGALL 63 >gi|75675038|ref|YP_317459.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419908|gb|ABA04107.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 71 Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + KLTQ+E+ R+G + ++ +E G + ++ + +A LD L Sbjct: 6 VMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSVLGKVAVALDVDPCDL 65 Query: 81 LKP 83 ++P Sbjct: 66 IRP 68 >gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 188 Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+ A L+ E+ R G A+S +S+LE+G +++ + LA L P +L+ Sbjct: 14 IAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWALAVALGVPFSRLV 73 Query: 82 KP 83 P Sbjct: 74 DP 75 >gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426] gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 180 Score = 40.8 bits (94), Expect = 0.054, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 35/51 (68%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+IRK+ LT KE+ +TG + S++S++E G +++ I ++ +A L+ P+ Sbjct: 9 RDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPI 59 >gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 108 Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R++R K+TQ+E+ RT + +IS++E I+++ + + L+ PL P Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVPLSDFFLP 69 >gi|300115620|ref|YP_003762194.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541562|gb|ADJ29873.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 104 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 N RN RK+ TQKE+ ++G AQ+ IS LE GKS + ID++ LA + LL Sbjct: 4 NIVRNRRKQLGWTQKELAEKSGVAQAQISRLEAGKSYNVTIDSLRNLAWAFGCSVIDLL 62 >gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis] gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 120 Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R R+ L Q E+ + G S IS ETG + DN+ ILA +LD L Sbjct: 14 VFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLRILADSLDVTTDYL 73 Query: 81 L 81 L Sbjct: 74 L 74 >gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] Length = 134 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + AI+ E++ F + R A LTQ+E+ + + S+IS LE GK +I +++ Sbjct: 17 PKVKGAIMEEKIGF--RVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLM 74 Query: 69 LAHTLDTPLWKLLK 82 LA ++ L LL+ Sbjct: 75 LADIMNVGLEDLLR 88 >gi|119383973|ref|YP_915029.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373740|gb|ABL69333.1| putative transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 85 Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R RK +L+Q+E+ R G + +IS LE+GK ++ M LA LDT L Sbjct: 14 LAYARVLRRHRKNMELSQEELAFRAGLSMRYISLLESGKHQPSLGTMKALADALDTSLTA 73 Query: 80 LL 81 ++ Sbjct: 74 MI 75 >gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 123 Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 35/56 (62%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + +RKE LTQ+++ TG + S IS+LE GK T +I+ + L++ + + +L Sbjct: 5 NLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDEL 60 >gi|307704202|ref|ZP_07641125.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307622233|gb|EFO01247.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 108 Score = 40.8 bits (94), Expect = 0.065, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R++R K+TQ+E+ RT + +IS++E I+++ + + L+ PL P Sbjct: 10 NQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALEVPLSDFFLP 69 >gi|322421833|ref|YP_004201056.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128220|gb|ADW15780.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 124 Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 27/49 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + LTQK++ RTG AQ ISE+E GK I D LA L+ Sbjct: 69 IRGARGKEGLTQKQLAQRTGIAQHHISEMENGKRPIGKDTARRLADALN 117 >gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] Length = 71 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L ER ++R+EAKL+Q E+ + G + IS +E+G+ ++ +D + +A L Sbjct: 7 LAERERIGQKIASMRQEAKLSQAELGKKCGLERFHISRIESGRHSVGLDTLAAIARALGK 66 Query: 76 PL 77 L Sbjct: 67 TL 68 >gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 219 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ D+ AI R N R +R++ LT E+ R G +++ +S++E +++ Sbjct: 23 PQEPVDDTEFEAAIGR-------NVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSC 75 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + +LA D P+ L + Sbjct: 76 SLSTLALLAKGFDVPVTTLFR 96 >gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 99 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%) Query: 23 VNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL---- 77 + NF RN R L++KE+ + +Q IS E G ST++I+N++IL + L+ P Sbjct: 7 IGNFIRNARVSKGLSEKELASLISVSQQQISRYERGISTLSIENILILLNALNIPFDEFS 66 Query: 78 WKLLKP 83 K++KP Sbjct: 67 NKIIKP 72 >gi|153009785|ref|YP_001371000.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561673|gb|ABS15171.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 72 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I +N IR E LTQ+++ +GF+Q ++S LE G+ I + L+ L+T + Sbjct: 2 RKIVGDNLTWIRIEKGLTQEQVAEGSGFSQQYLSSLERGQYNPTIITIYELSLALETTYF 61 Query: 79 KLLKP 83 L+ P Sbjct: 62 SLILP 66 >gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 76 Score = 40.8 bits (94), Expect = 0.068, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R ++Q+ +R GFA++++S +ETG + +I+ + +LA L + L Sbjct: 14 FGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLADALGVSISALF 73 Query: 82 K 82 + Sbjct: 74 E 74 >gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 187 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RKEA LT +E+ ++G +Q ++S+ E G + ++ N+ LA +L T LL Sbjct: 17 RTARKEAGLTLREVAVKSGLSQPFLSQTENGHAVPSVMNLHRLAQSLGTTAHSLLA 72 >gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6] gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6] Length = 93 Score = 40.8 bits (94), Expect = 0.069, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 34/72 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L+D + + R R +R A L+Q ++ +R G IS E G I+ID +A Sbjct: 20 LADQVQQHRWDVGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIA 79 Query: 71 HTLDTPLWKLLK 82 L P W+L + Sbjct: 80 TALGQPSWRLFR 91 >gi|318057395|ref|ZP_07976118.1| hypothetical protein SSA3_05613 [Streptomyces sp. SA3_actG] gi|318076536|ref|ZP_07983868.1| hypothetical protein SSA3_07397 [Streptomyces sp. SA3_actF] Length = 77 Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L +R + R R EA +TQ+ + RTG + I E G + +D+++++A L Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTEGGTHSTLLDHLLLIARALG 69 Query: 75 TPLWKLLK 82 PL L++ Sbjct: 70 RPLADLVR 77 >gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] Length = 342 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN +N RKE KLTQ ++ R ++S IS E G +I +I LA+ ++ + L Sbjct: 5 VFANNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSIDNL 64 Query: 81 L 81 Sbjct: 65 F 65 >gi|116328428|ref|YP_798148.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331157|ref|YP_800875.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121172|gb|ABJ79215.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124846|gb|ABJ76117.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 102 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RE IF N RK A LTQ EI R G QS+IS++E+G+ +++ Sbjct: 8 REAKIFCKNLIAARKSADLTQLEIAKRLGEPQSYISKIESGERRLDV 54 >gi|182414108|ref|YP_001819174.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177841322|gb|ACB75574.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 96 Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79 I N + +R++ +LTQ+++ R G + +E G + + + LA L P W+ Sbjct: 15 ILRKNLKRLREKQRLTQQDLAERAGIDYKYAQRIEAGHWPGLQLKTIEKLAEALGVPAWR 74 Query: 80 LLKP 83 LLKP Sbjct: 75 LLKP 78 >gi|255316571|ref|ZP_05358154.1| hypothetical protein CdifQCD-7_19592 [Clostridium difficile QCD-76w55] Length = 227 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 E L +AI E+ F+ N N RK+ +TQKEI +TG Q IS +ETG Sbjct: 28 ERMLVNAIHVEKD-FIQNLVNFRKKQNITQKEIAEKTGLTQQAISGIETG 76 >gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea] gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain [Saccharopolyspora erythraea NRRL 2338] Length = 196 Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R L+ E+ R + +SELE G+ ++ + LA L+ PL +L Sbjct: 6 VVGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGEL 65 Query: 81 L 81 L Sbjct: 66 L 66 >gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 186 Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R A L+ E+ R G A+S +S+LE G ++ + L+ L+ P L Sbjct: 11 VIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGNPGVETLWALSVALNVPFATL 70 Query: 81 LKP 83 ++P Sbjct: 71 VEP 73 >gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 72 Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N + IR+ +LTQ+++ + +GF+Q +IS LE G+ I + LA L Sbjct: 4 RKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVSHM 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|127512198|ref|YP_001093395.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637493|gb|ABO23136.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 127 Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +IR+E + Q ++ R G +Q+ S LE GK+T +ID + ++A L +L + Sbjct: 20 SIRREKGIEQSDVAARMGLSQASYSRLEGGKATYSIDQVFLVAEALQVEPAELFQ 74 >gi|11094394|gb|AAG29617.1|AF217235_20 Orf20 [Staphylococcus aureus] Length = 267 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 19 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 72 >gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 76 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IF +++R+E+ L Q+EI G Q+ S+ ETGKS N++N++ LA T Sbjct: 6 FKSNFIFPKRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKT 65 >gi|271969477|ref|YP_003343673.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512652|gb|ACZ90930.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 92 Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 31/67 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE ++ N R E L+Q E+ R G Q +S LETG T + + LA LD Sbjct: 22 REALLLGQQVYNRRTELGLSQAELAERAGMTQPQVSRLETGGVTPTLALLRRLAKALDAE 81 Query: 77 LWKLLKP 83 L KP Sbjct: 82 LNVTFKP 88 >gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica] gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 78 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R+IF +N R +R+ L+Q+ + + G +++I +E + I+IDN+ +A L Sbjct: 9 RARVIFAHNIRKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDRIASALGVS 68 Query: 77 LWKLLK 82 LL+ Sbjct: 69 PSSLLE 74 >gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 181 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ + L+ P+ K Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYFFK 65 >gi|77543203|gb|ABA87016.1| hypothetical protein [Vibrio cholerae] gi|259156517|gb|ACV96461.1| transcriptional regulator, XRE family [Vibrio cholerae Mex1] Length = 106 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R R +Q+E+ R+G QS IS++E+G + I ++I LA LD L Sbjct: 8 ILKSLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLELL 64 >gi|12746568|gb|AAK07492.1| hypothetical protein [IncJ plasmid R391] gi|20095202|gb|AAM08068.1| hypothetical protein [Providencia rettgeri] gi|262318118|dbj|BAI48444.1| hypothetical protein [Proteus mirabilis] Length = 106 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R R +Q+E+ R+G QS IS++E+G + I ++I LA LD L Sbjct: 8 ILESLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLELL 64 >gi|82750104|ref|YP_415845.1| pathogenicity island protein [Staphylococcus aureus RF122] gi|82655635|emb|CAI80031.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus RF122] Length = 261 Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 13 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66 >gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 23 VNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL---- 77 + NF RN R L++KE+ + +Q +S E G ST++I N++IL + L+ P Sbjct: 7 IGNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIPFDEFS 66 Query: 78 WKLLKP 83 K++KP Sbjct: 67 HKIIKP 72 >gi|283469697|emb|CAQ48908.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus subsp. aureus ST398] gi|298693729|gb|ADI96951.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus ED133] Length = 261 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 13 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66 >gi|16762390|ref|NP_458007.1| hypothetical protein STY3832 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143878|ref|NP_807220.1| hypothetical protein t3577 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25512349|pir||AD0945 probable DNA-binding protein STY3832 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504694|emb|CAD09582.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139514|gb|AAO71080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 188 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R++ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 22 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 75 >gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606] gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606] Length = 224 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINI 63 N + IRK K+TQKE+ ++G QS IS+LETG KST +I Sbjct: 11 NLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAKSTGSI 51 >gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 77 Score = 40.4 bits (93), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N IR E LTQ++ + +GF+Q ++S LE GK I + LA L+ Sbjct: 4 RRLVGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|332141631|ref|YP_004427369.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332143443|ref|YP_004429181.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551653|gb|AEA98371.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553465|gb|AEB00184.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 106 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R R +Q+E+ R+G QS IS++E+G + I ++I LA LD L Sbjct: 8 ILESLREARVRKGFSQRELSARSGVPQSHISKIESGGVDLRISSLIALARVLDLELL 64 >gi|84684082|ref|ZP_01011984.1| hypothetical protein 1099457000262_RB2654_16576 [Maritimibacter alkaliphilus HTCC2654] gi|84667835|gb|EAQ14303.1| hypothetical protein RB2654_16576 [Rhodobacterales bacterium HTCC2654] Length = 97 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQ+E+ +R G ++S+ SE+E+GK N + A + P ++L+ Sbjct: 5 LRSLREKRGWTQEEVASRAGMSKSFYSEIESGKKAANSQRIRKFAEVFEVPAFELI 60 >gi|291619732|ref|YP_003522474.1| YdcN [Pantoea ananatis LMG 20103] gi|291154762|gb|ADD79346.1| YdcN [Pantoea ananatis LMG 20103] Length = 183 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ A LT E+ R G A+S +S+LE G I+ + L L+ P +L++P Sbjct: 17 RQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARLMEP 70 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ DE H S N R +RK LT K++ RT + S +S++E +S+ ++ Sbjct: 127 RREDELHAS---------IGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASV 177 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ +A LD P+ +L Sbjct: 178 SSLFKVATALDVPITELF 195 >gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 104 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RK A LTQ E+ +TGF IS ETG T +++ + +LA L L Sbjct: 11 KRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKL 61 >gi|327396552|dbj|BAK13973.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 183 Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ A LT E+ R G A+S +S+LE G I+ + L L+ P +L++P Sbjct: 17 RQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARLMEP 70 >gi|297620902|ref|YP_003709039.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297376203|gb|ADI38033.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 76 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K+ +P L D F RN+R LTQ+++ R GF ++I +E + Sbjct: 1 MTLKKKKDPILVD--------FAAKVRNMRHSIPLTQEQLAERAGFHVNYIGGIERAERN 52 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ ++ L+ L PL +LL Sbjct: 53 PSLTSLCSLSKALGCPLKELL 73 >gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++RK+A ++Q+E+ +R G ++++ +E G+ ++ N+ ++ L P+ L Sbjct: 11 FGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLF 70 Query: 82 K 82 K Sbjct: 71 K 71 >gi|307578025|gb|ADN53644.1| Stl [Staphylococcus aureus] Length = 278 Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 30 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 83 >gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 72 Score = 40.0 bits (92), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R IR + LTQ++ +GF+Q +IS LE G+ + + LA L LL+P Sbjct: 9 GNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHLDLLRP 68 >gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 78 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK L+ E+ N G +Q IS E G+ INI+N+ LA+ LDT + Sbjct: 16 RKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEM 63 >gi|213426090|ref|ZP_03358840.1| hypothetical protein SentesTyphi_10843 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582495|ref|ZP_03364321.1| hypothetical protein SentesTyph_15373 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612462|ref|ZP_03370288.1| hypothetical protein SentesTyp_08142 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647358|ref|ZP_03377411.1| hypothetical protein SentesTy_08670 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857431|ref|ZP_03384402.1| hypothetical protein SentesT_19934 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 182 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R++ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|24213211|ref|NP_710692.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45658873|ref|YP_002959.1| hypothetical protein LIC13047 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193932|gb|AAN47710.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45602118|gb|AAS71596.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 98 Score = 40.0 bits (92), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RE IF N RK +KLTQ E+ R G QS+IS++E+G+ +++ Sbjct: 8 REAKIFCKNLIAARKNSKLTQLEVAKRLGEPQSYISKIESGERRLDV 54 >gi|148254764|ref|YP_001239349.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406937|gb|ABQ35443.1| putative transcriptional regulatory protein [Bradyrhizobium sp. BTAi1] Length = 87 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N +++R+ ++Q+E+ +R +++IS +E ++ ++ID + LA L Sbjct: 6 RDILATNLKHLRRTKGVSQEELAHRAEIDRTYISMIERSRNAVSIDVLAALAGGLGVEPA 65 Query: 79 KLLKP 83 LLKP Sbjct: 66 DLLKP 70 >gi|213160859|ref|ZP_03346569.1| hypothetical protein Salmoneentericaenterica_12733 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 181 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R++ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 15 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 68 >gi|319426969|gb|ADV55043.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 108 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R+ R +Q+E+ R+G QS IS++E+G + + ++I LA LD L+ Sbjct: 8 ILGSLRDARIRKGFSQRELSARSGVPQSHISKIESGDVDLRMSSLIALARVLDLELF 64 >gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 107 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +Q E+ + G + + E GKS I +D +I +A LD PL +L Sbjct: 8 KRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLSAIL 62 >gi|283834409|ref|ZP_06354150.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220] gi|291069953|gb|EFE08062.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220] Length = 153 Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R+IR+E +TQ EI + G + ++E GKST++++N++ +D K+ Sbjct: 8 ILAFHMRDIREEKGVTQAEIAEKLGMTSAGWGKVENGKSTLSVENLMKFCKLVDIDAQKI 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|158520953|ref|YP_001528823.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158509779|gb|ABW66746.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 84 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + IRK +Q+E+ +G+ +++IS LE GK + ++ + LA TL +L Sbjct: 17 LFGNALKQIRKRKGFSQEELGLESGYHRTYISLLERGKKSPSLKTIFRLAETLQVKPSEL 76 Query: 81 LK 82 +K Sbjct: 77 IK 78 >gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 66 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLLK 82 +R+E K++Q+E+ N++G +++ IS +ET KS T+ + + LA LD P+ K Sbjct: 9 LREEKKMSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPIGYFFK 63 >gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 190 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK KLT KE+ RTG + +IS++E ++ ++ ++ +A D P++ L+ Sbjct: 4 TNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVLM 61 >gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 187 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IRKE K TQ E+ GF +S +S++E G + + ++ +A L + LL+P Sbjct: 8 RLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSDLLEP 64 >gi|291521949|emb|CBK80242.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 80 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++R+ + N + RK ++++Q+ + + G +++IS+LE K + M++LA L+ Sbjct: 15 MKQRLSY--NIKRYRKLSRVSQQALADMCGLHRTYISDLENAKCNPTLSVMMVLADCLNV 72 Query: 76 PLWKLLK 82 L LLK Sbjct: 73 QLEDLLK 79 >gi|304436877|ref|ZP_07396841.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370076|gb|EFM23737.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 86 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +IF ++ R IRKE K TQKE G + + E GK+ D +I LA D L Sbjct: 2 VIFKDHLRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLDY 61 Query: 80 LL 81 L+ Sbjct: 62 LV 63 >gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 75 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Query: 16 LRERMIFVNNFRNIRKE-AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 LR+R F R +RKE L+Q+ ++ GFA+S+ +ETGK+ ++D + +A L Sbjct: 7 LRQR--FGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLG 64 Query: 75 TPLWKLLK 82 + L + Sbjct: 65 VEVSALFE 72 >gi|300724905|ref|YP_003714230.1| hypothetical protein XNC1_4123 [Xenorhabdus nematophila ATCC 19061] gi|297631447|emb|CBJ92148.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 93 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L + +N ++R EAKLTQ+++ +R G +S IS LE GKS + ++ A Sbjct: 24 LNDEFELINTLLSMRTEAKLTQQQVADRMGTKESNISRLEKGKSNPTLSTLVNYA 78 >gi|156935962|ref|YP_001439878.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894] gi|156534216|gb|ABU79042.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894] Length = 182 Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R A L+ E+ R G A+S +S+LE G +++ + L LD P +L++P Sbjct: 16 RTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLMEP 69 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 34/50 (68%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RN+RK LTQ+E+ RT ++ +IS++E+G+S+ ++++ + + L T Sbjct: 7 LRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGT 56 >gi|161505447|ref|YP_001572559.1| hypothetical protein SARI_03605 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866794|gb|ABX23417.1| hypothetical protein SARI_03605 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 204 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 38 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLLEP 91 >gi|303246008|ref|ZP_07332290.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492791|gb|EFL52659.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 87 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RKEA L Q E+ R G+ QS++S+ E+G+ I++ + + L L + + Sbjct: 28 SLRKEAGLRQTELAARLGYPQSYVSKYESGQRRIDLIELEAICQALGITLLEFV 81 >gi|153954630|ref|YP_001395395.1| hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555] gi|146347488|gb|EDK34024.1| Hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555] Length = 71 Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81 +N + IR+ +T+ + ++G +QS+I E+E+GK T +ID ++ LA L+ + +LL Sbjct: 4 DNLKKIREIKGITKYRLSKKSGISQSYICEIESGKYTNPSIDIVLKLAEALEISISELL 62 >gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ G S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|217971592|ref|YP_002356343.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496727|gb|ACK44920.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 129 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE + Q + + G +Q+ S LE+GKST ++D + A L+ P +L Sbjct: 18 NKRKEFGIEQSVMADCMGLSQASYSRLESGKSTFSVDQLFECAQALNIPAAELF 71 >gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 179 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 35/51 (68%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++RK+ LT KE+ +TG + S++S++E G +++ I ++ +A L+ P+ Sbjct: 9 RDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPI 59 >gi|295837564|ref|ZP_06824497.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197698354|gb|EDY45287.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 280 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +R EA L K++ R G+ +S IS LETGK T ID++ A D Sbjct: 17 LRELRTEAGLQGKDLAARLGWQRSKISRLETGKQTPTIDDLAAWAQATD 65 >gi|187934446|ref|YP_001886145.1| MerR family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722599|gb|ACD23820.1| transcriptional regulator, MerR family [Clostridium botulinum B str. Eklund 17B] Length = 118 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 FRN + LT KE+ TG + S+IS++E + +IDN+ ILA LD + +LL Sbjct: 10 FRN---KKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQLL 62 >gi|316932216|ref|YP_004107198.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599930|gb|ADU42465.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 73 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + KLTQ+E+ +R G + ++ +E G + ++ + +A L+ +L Sbjct: 6 VMARNLRRLRHDKKLTQEELADRAGLSMRYVGAIERGDVSASVTVLGQIADALEIEPGEL 65 Query: 81 LK 82 LK Sbjct: 66 LK 67 >gi|260595940|ref|YP_003208511.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032] gi|260215117|emb|CBA26887.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032] Length = 182 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R A L+ E+ R G A+S +S+LE G +++ + L LD P +L++P Sbjct: 16 RTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLMEP 69 >gi|58616432|ref|YP_195561.1| TrbA protein of DNA transfer system [Azoarcus sp. EbN1] gi|56315894|emb|CAI10537.1| TrbA protein of DNA transfer system [Aromatoleum aromaticum EbN1] Length = 120 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + E +T++E+ +++G + S++S++ TGK ++ M +A L TPL L Sbjct: 5 IFFTNMLRLLDELHMTKQELADKSGVSISFLSDITTGKGNPSLKVMEDIAKALQTPLPLL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402] Length = 93 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 16 LRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 LRE+ + +N R R++A L+Q E+ R +Q+ I+ +ETGK T ++D ++ + H L+ Sbjct: 5 LREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALN 64 >gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 148 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 17 RERMIFVN-NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +M+ + R R + L+Q +I RTG + ++S +E G + ++D + +A LD Sbjct: 30 RAKMMKIGMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDL 89 Query: 76 PLWKLL 81 PL + Sbjct: 90 PLAQFF 95 >gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15] gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15] Length = 142 Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K+TQK + + ++S++ +LE+G+ ++D + +A LD + LL Sbjct: 6 NIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINLLL 62 >gi|333031050|ref|ZP_08459111.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] gi|332741647|gb|EGJ72129.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] Length = 105 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR+ RK KLTQKE+ ++ G +S+I +E G + + + + I +A L L Sbjct: 47 FRDRRKTLKLTQKELADKVGKERSYIGRIEKGSTDMQLSSFISIARALGLDL 98 >gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 179 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK L+ ++I RTG +Q ++S++E K++ +I + +A+ L+ PL LL Sbjct: 6 NIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFLL 62 >gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 200 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +T E+ RTG ++S +S LE+G+ ++ +++LA D PL L+ Sbjct: 16 LRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDLV 71 >gi|157147315|ref|YP_001454634.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895] gi|157084520|gb|ABV14198.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895] Length = 182 Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLLEP 69 >gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 60 Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ E+ +RTG +Q IS +E G+ +++ + LA LDT + +LL Sbjct: 4 LKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVDQLL 59 >gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 200 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R R E ++ E+ R+G A+ +S+LE+G I+ + L++ L P+ LL Sbjct: 17 NLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSALLS 74 >gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] Length = 186 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 24/34 (70%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R IRKE +TQ+E+ R G Q++I++LE+GK Sbjct: 12 EIRRIRKELGITQEELAKRAGVTQAYIAKLESGK 45 >gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family [Pelobacter propionicus DSM 2379] Length = 368 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 42/81 (51%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR +++ S + RE + N+ + R+E +Q+E+ R G +++ +S +ETGK Sbjct: 6 PRERQNTVTHSIIMSREEIPLSNHIKKFREERGWSQQELAERAGLSRAGVSAIETGKLVP 65 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 + + LA P+ +L + Sbjct: 66 STVAALALAKVFACPVEELFQ 86 >gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ G S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|119385131|ref|YP_916187.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374898|gb|ABL70491.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 75 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R +R E +Q+ + + G ++++S +E + I+IDN+ +A W Sbjct: 10 RDIVARNMRRLRAERGWSQEYLAHECGLNRTYLSAVERSEQNISIDNLYRVAQGFGVESW 69 Query: 79 KLLK 82 LLK Sbjct: 70 TLLK 73 >gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 73 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +F + R +R+E +Q+E+ R G ++++ +E G+ + ++N++ LA L Sbjct: 7 KFLFGKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKALSV 63 >gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 171 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E L+ E+ R G + +SE+E G ++ + L LD PL LL Sbjct: 8 GRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPLDVPLTALLG 66 >gi|163816219|ref|ZP_02207586.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC 27759] gi|158448414|gb|EDP25409.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC 27759] Length = 70 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE K TQ I TGF+ S+IS+LE GK+T I I + + L + Sbjct: 17 RKELKYTQAYIAEFTGFSVSFISDLERGKATAEIGKAITIINLLGMDI 64 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK A +TQ+E+ R G ++ IS+ ETG ++ + +A L P+ +LL Sbjct: 4 DQIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELL 61 >gi|325971067|ref|YP_004247258.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026305|gb|ADY13064.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 107 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + R++ LTQ ++ + G + S+++E+ET + + + ++ LD P W Sbjct: 10 IFARNLKERRRKLSLTQAQLAEKIGVSTSFVTEIETSRKAPSFATIEKISAALDVPCWTF 69 Query: 81 L 81 Sbjct: 70 F 70 >gi|315648369|ref|ZP_07901468.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453] gi|329923099|ref|ZP_08278615.1| restriction-modification system control element Bcll [Paenibacillus sp. HGF5] gi|315276063|gb|EFU39409.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453] gi|328941872|gb|EGG38157.1| restriction-modification system control element Bcll [Paenibacillus sp. HGF5] Length = 78 Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF +NIRKE K++Q+E+ R+ +++IS LE G +++++ +A LD +L Sbjct: 6 IFGQVLKNIRKEQKVSQEELAFRSNLDRTYISMLERGIHQPTLNSLLAIAAALDMKAAEL 65 Query: 81 L 81 + Sbjct: 66 V 66 >gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] Length = 87 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L+E +F+NN + RKE K++Q+E+ +R + +S +E GK I+ I +A LD Sbjct: 13 LKEAFLFMNNNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALD 72 Query: 75 TPLWKLL 81 L KL Sbjct: 73 VDLNKLF 79 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R A LT KE+ +TG + S+IS++E G S+ I ++ +A L+ P+ P Sbjct: 14 RTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSFFTP 67 >gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor [Sphingomonas wittichii RW1] Length = 201 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R+ RK KLT E+ R+ + S+IS E GK+T +I +++ LA LD + Sbjct: 15 MSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDISY 74 Query: 80 LLKP 83 L P Sbjct: 75 FLAP 78 >gi|157961107|ref|YP_001501141.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846107|gb|ABV86606.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 118 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 IRKE + Q E+ TG +Q +S LE GK+ I ID + ++ L Sbjct: 15 LEKIRKELGMEQSEVSVATGISQPVLSRLEKGKAMITIDQLFVICGALG 63 >gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] Length = 196 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I R+ RK +LT E+ R G +QS +S++E GK+ ++D + L+ D PL Sbjct: 14 IIGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVPL 70 >gi|300715480|ref|YP_003740283.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061316|emb|CAX58425.1| transcriptional regulator [Erwinia billingiae Eb661] Length = 182 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R A L+ E+ R G A+S +S+LE+ +I+ + L L+ P KL Sbjct: 7 VIAASLARERTRAGLSLAEVARRAGIAKSTLSQLESANGNPSIETLWALCGALNIPFAKL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 91 Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 16 LRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 LRE+ + +N R R++A L+Q E+ R +Q+ I+ +ETGK T ++D ++ + H L+ Sbjct: 3 LREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALN 62 >gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 180 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 34/51 (66%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++R + LT KE+ +TG + S++S++E G S++ I ++ +A L+ P+ Sbjct: 9 RSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPI 59 >gi|296446597|ref|ZP_06888539.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296255951|gb|EFH03036.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 118 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R+ +L+Q+E+ +R +++IS +E + +D + LA L P Sbjct: 4 RETLARNLRKYRRAQRLSQEELGHRAELDRTYISSIERCVYSATVDVVGRLADALGIPAL 63 Query: 79 KLLKP 83 +LL+P Sbjct: 64 ELLRP 68 >gi|238916522|ref|YP_002930039.1| hypothetical protein EUBELI_00579 [Eubacterium eligens ATCC 27750] gi|238871882|gb|ACR71592.1| Hypothetical protein EUBELI_00579 [Eubacterium eligens ATCC 27750] Length = 71 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N RN RKE K TQ + TG + S+IS++E GK T+ I +I L L Sbjct: 11 NIIRNRRKELKYTQAFLSEYTGLSVSFISDVERGKPTVEIGKVIQLISIL 60 >gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 80 Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RNIR + +TQ+E+ TG QS IS E G I + ++ L+ P+ KLL+ Sbjct: 6 NIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLLE 63 >gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 209 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK K+TQK++ NRTG + S +S++E G+ +++ + L+ +L+ L L+ Sbjct: 145 LRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLSASLNVKLSYFLE 198 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RNIR + +TQ+E+ TG QS IS E G I + ++ L+ P+ KLL+ Sbjct: 9 NIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLLE 66 >gi|16767308|ref|NP_462923.1| hypothetical protein STM4042A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415888|ref|YP_152963.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364817|ref|YP_002144454.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207859233|ref|YP_002245884.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16422606|gb|AAL22882.1| hypothetical protein STM4042A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130145|gb|AAV79651.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096294|emb|CAR61895.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206711036|emb|CAR35406.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249159|emb|CBG27020.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996333|gb|ACY91218.1| hypothetical protein STM14_4861 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160550|emb|CBW20080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990871|gb|AEF09854.1| hypothetical protein STMUK_4027 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 188 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 22 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 75 >gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 149 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R + LTQ+E+ N+ + +S ETG++T N+D + +LA TL P+ LL+ Sbjct: 9 QLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLE 63 >gi|258591602|emb|CBE67903.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 71 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D +LR F R R ++Q+E+ R G ++++ +E G+ I + N++ A Sbjct: 3 TDILLR----FGQKVRQRRLSLAISQEELAERAGVHRTYVGMIERGEKNITLRNIVKFAK 58 Query: 72 TLDTPLWKLLK 82 LD P+ L+K Sbjct: 59 ALDMPVHNLMK 69 >gi|62182502|ref|YP_218919.1| hypothetical protein SC3932 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130135|gb|AAX67838.1| hypothetical protein SCH_3932 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|320088451|emb|CBY98210.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716998|gb|EFZ08569.1| hypothetical protein SCA50_4196 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132385|gb|ADX19815.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 204 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 38 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 91 >gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56'] gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 202 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 37/61 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + RN+RK+ LT K++ RTG + S +S++E +S+ +I ++ +A L++ + L Sbjct: 139 VIGDTIRNLRKDKDLTLKQMARRTGLSVSLLSQIERAESSASISSLYKIAVALESRIQDL 198 Query: 81 L 81 Sbjct: 199 F 199 >gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 91 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N +R+ KLTQ+E+ R+GF+Q ++S++E G I + +A L Sbjct: 4 RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 ALVEP 68 >gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 221 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER+I R +R+ A LT E+ R+G ++ +S++E ++ ++ + LA LD P+ Sbjct: 33 ERLI-AAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLTTLARLADALDVPV 91 Query: 78 WKLLK 82 L + Sbjct: 92 TALFR 96 >gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171] gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171] Length = 289 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRK L+Q E+ + G QS+IS +E G +ID ++I+A+ L+ PL LL+ Sbjct: 11 RRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65 >gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 112 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK+ +Q+++ R S++ ++E G+ + +D + +AH L PL +L+ Sbjct: 11 NIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQCPLEQLV 67 >gi|283787426|ref|YP_003367291.1| DNA binding protein [Citrobacter rodentium ICC168] gi|282950880|emb|CBG90557.1| putative DNA binding protein [Citrobacter rodentium ICC168] Length = 182 Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|315034706|gb|EFT46638.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315578681|gb|EFU90872.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 83 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+RM NF+ R++ KLTQKE+ + ++ ++ +LE+G S+ + +I+A P Sbjct: 6 RDRM--RTNFKMEREKLKLTQKELAEKLDLSEVYVRKLESGASSPSTKKAVIIAEFFGKP 63 Query: 77 LWKLL 81 L L Sbjct: 64 LDYLF 68 >gi|307151920|ref|YP_003887304.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982148|gb|ADN14029.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 170 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 23/39 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 R+ RN+RK +TQKE+ + G Q W+S+LE+ Sbjct: 33 RIALTQGMRNLRKRVGMTQKELAQKLGVTQGWVSKLESA 71 >gi|322613196|gb|EFY10140.1| hypothetical protein SEEM315_17865 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619177|gb|EFY16060.1| hypothetical protein SEEM971_20829 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626043|gb|EFY22855.1| hypothetical protein SEEM973_21760 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626497|gb|EFY23303.1| hypothetical protein SEEM974_14708 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632390|gb|EFY29138.1| hypothetical protein SEEM201_18692 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635128|gb|EFY31849.1| hypothetical protein SEEM202_17461 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642669|gb|EFY39259.1| hypothetical protein SEEM954_08582 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647958|gb|EFY44430.1| hypothetical protein SEEM054_15121 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650708|gb|EFY47109.1| hypothetical protein SEEM675_00280 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652891|gb|EFY49228.1| hypothetical protein SEEM965_09839 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657206|gb|EFY53486.1| hypothetical protein SEEM19N_14452 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662306|gb|EFY58521.1| hypothetical protein SEEM801_06228 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666841|gb|EFY63017.1| hypothetical protein SEEM507_05993 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672111|gb|EFY68226.1| hypothetical protein SEEM877_04625 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675833|gb|EFY71905.1| hypothetical protein SEEM867_04673 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681751|gb|EFY77777.1| hypothetical protein SEEM180_13742 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684054|gb|EFY80063.1| hypothetical protein SEEM600_14844 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193326|gb|EFZ78541.1| hypothetical protein SEEM581_19668 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197683|gb|EFZ82816.1| hypothetical protein SEEM501_14961 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200743|gb|EFZ85814.1| hypothetical protein SEEM460_14930 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207252|gb|EFZ92204.1| hypothetical protein SEEM020_16655 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211454|gb|EFZ96295.1| hypothetical protein SEEM6152_00405 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218500|gb|EGA03208.1| hypothetical protein SEEM0077_08820 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221017|gb|EGA05449.1| hypothetical protein SEEM0047_14034 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225993|gb|EGA10212.1| hypothetical protein SEEM0055_20581 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231673|gb|EGA15785.1| hypothetical protein SEEM0052_06395 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236078|gb|EGA20156.1| hypothetical protein SEEM3312_17409 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239500|gb|EGA23549.1| hypothetical protein SEEM5258_18857 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243906|gb|EGA27917.1| hypothetical protein SEEM1156_17632 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249269|gb|EGA33186.1| hypothetical protein SEEM9199_02187 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250488|gb|EGA34371.1| hypothetical protein SEEM8282_08477 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258942|gb|EGA42594.1| hypothetical protein SEEM8283_01562 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260187|gb|EGA43810.1| hypothetical protein SEEM8284_01027 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265306|gb|EGA48803.1| hypothetical protein SEEM8285_17297 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270528|gb|EGA53974.1| hypothetical protein SEEM8287_12833 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 182 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|161617166|ref|YP_001591131.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551474|ref|ZP_02345229.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991568|ref|ZP_02572667.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232973|ref|ZP_02658031.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237658|ref|ZP_02662716.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244212|ref|ZP_02669144.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263065|ref|ZP_02685038.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467376|ref|ZP_02701213.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821618|ref|ZP_02833618.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446538|ref|YP_002043263.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451910|ref|YP_002048044.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468718|ref|ZP_03074702.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736659|ref|YP_002116963.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251740|ref|YP_002148970.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263714|ref|ZP_03163788.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244893|ref|YP_002217966.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388606|ref|ZP_03215218.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930179|ref|ZP_03221156.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224585852|ref|YP_002639651.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912186|ref|ZP_04656023.1| hypothetical protein SentesTe_13791 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161366530|gb|ABX70298.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405201|gb|ACF65423.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410214|gb|ACF70433.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455082|gb|EDX43921.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712161|gb|ACF91382.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630241|gb|EDX48881.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215443|gb|ACH52840.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241969|gb|EDY24589.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289380|gb|EDY28745.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939409|gb|ACH76742.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605704|gb|EDZ04249.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320583|gb|EDZ05785.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323777|gb|EDZ11616.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330070|gb|EDZ16834.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332759|gb|EDZ19523.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336928|gb|EDZ23692.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341774|gb|EDZ28538.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348305|gb|EDZ34936.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224470380|gb|ACN48210.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312915157|dbj|BAJ39131.1| hypothetical protein STMDT12_C41880 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225331|gb|EFX50389.1| Putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|326625758|gb|EGE32103.1| Helix-turn-helix type 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 182 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|320526923|ref|ZP_08028113.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320132891|gb|EFW25431.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 144 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81 + F+ I+KE + EI R+G +S +SE E GK T + I +I +A LD L +L+ Sbjct: 10 IEGFKRIKKEKGINNYEIHKRSGVLESTLSEFERGKHTDLRISTLIKIADALDVTLDELV 69 >gi|283834661|ref|ZP_06354402.1| hypothetical protein CIT292_08868 [Citrobacter youngae ATCC 29220] gi|291069576|gb|EFE07685.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 182 Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|148655090|ref|YP_001275295.1| helix-turn-helix domain-containing protein [Roseiflexus sp. RS-1] gi|148567200|gb|ABQ89345.1| helix-turn-helix domain protein [Roseiflexus sp. RS-1] Length = 119 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ +LTQ E+ +R G + S+IS +E G+S+ I + LA T ++LL Sbjct: 16 RQRDRLTQAELGSRIGVSGSYISSIENGQSSARIAEIEALATVFRTTAFELL 67 >gi|257090409|ref|ZP_05584770.1| predicted protein [Enterococcus faecalis CH188] gi|256999221|gb|EEU85741.1| predicted protein [Enterococcus faecalis CH188] Length = 75 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NF+ R++ KLTQKE+ + ++ +I +LE+G S+ + +I+A PL Sbjct: 3 TNFKMEREKLKLTQKELAEKLDLSEVYIRKLESGASSPSTKKAVIIAEFFGKPL 56 >gi|237728009|ref|ZP_04558490.1| XRE family transcriptional regulator [Citrobacter sp. 30_2] gi|226910266|gb|EEH96184.1| XRE family transcriptional regulator [Citrobacter sp. 30_2] Length = 182 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G +++ + L LD P +LL+P Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|78221537|ref|YP_383284.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78192792|gb|ABB30559.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 117 Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTL 73 L E F++ F R A +TQ E+ R G QS I+ LE+ GK + ++ + AH L Sbjct: 24 LDEEFAFLDEFLKARAAAGVTQAEVAERIGTTQSAIARLESGGGKHSPSLATLQKYAHAL 83 Query: 74 DTPL 77 L Sbjct: 84 GCRL 87 >gi|251800040|ref|YP_003014771.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547666|gb|ACT04685.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 182 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK +T +I TG +Q ++S++ET K++ +I + +A+ L PL LL Sbjct: 7 IRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAYLL 62 >gi|330968428|gb|EGH68688.1| XRE family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 50 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +TQ+E +R GFA++++S +ETG + ++D + LA L++ L L Sbjct: 1 MTQEEFADRCGFARTYMSRIETGGANPSLDAINTLAVALNSDLESLFA 48 >gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305] gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces brasiliensis DSM 5305] Length = 189 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+E LT +E+ +++G +SW+S++E + T ++ + +A L P+ +L+ Sbjct: 6 LAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVAELV 65 Query: 82 K 82 + Sbjct: 66 R 66 >gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R++ LTQ+++ R+GF+Q ++S LE G + + L+ L Sbjct: 4 RKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|241203027|ref|YP_002974123.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856917|gb|ACS54584.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 115 Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK ++ KE+ ++G +Q ++SE+ETGK ++D + +A LD L Sbjct: 60 VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDL 111 >gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 113 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F + +RK+A LTQ E+ + G QS ++ E GK +N+I LA L+ + Sbjct: 1 MAFAERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSV 58 >gi|153930626|ref|YP_001393241.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP 31758] gi|152958170|gb|ABS45633.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP 31758] Length = 122 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N I +E +T+ E+ +G + S++S+L GK+ ++ M +A LDTPL Sbjct: 4 LILFTNILRILEERGMTKSELHEVSGVSISFLSDLTNGKANPSLKVMEAIADALDTPLPI 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLE 66 >gi|310639543|ref|YP_003944301.1| transcription regulator [Paenibacillus polymyxa SC2] gi|309244493|gb|ADO54060.1| Transcription regulator [Paenibacillus polymyxa SC2] Length = 66 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+E+ NRTG + + + +E G T+ D + I+A TL+ + Sbjct: 2 ENLQLAQRLRAFRKLKGFTQQELANRTGISLTVLGAVERGNRTVEADMLNIIAQTLEIEV 61 Query: 78 WKL 80 +L Sbjct: 62 REL 64 >gi|311281644|ref|YP_003943875.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308750839|gb|ADO50591.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 182 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ +++RERM L+ EI R G A+S +S+LE+G +++ + L Sbjct: 8 IAKSLVRERM-----------RTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLC 56 Query: 71 HTLDTPLWKLLKP 83 LD P +LL+P Sbjct: 57 VALDIPFARLLEP 69 >gi|83950958|ref|ZP_00959691.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM] gi|83838857|gb|EAP78153.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM] Length = 199 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ L+Q+E+ R+G QS IS++E+ + + ++ LAH LD L Sbjct: 12 LREARENKGLSQRELSKRSGVPQSHISKIESNNVDLRLSSLASLAHALDLELA 64 >gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1] gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1] Length = 181 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ R S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|197119160|ref|YP_002139587.1| XRE family helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088520|gb|ACH39791.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter bemidjiensis Bem] Length = 99 Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTL 73 L E F++ F R A +TQ EI R G QS ++ LE+ GK + +I + AH L Sbjct: 24 LNEEFHFLDQFLKARAAAGVTQAEIAERIGTTQSAVARLESGRGKHSPSIATLEKYAHAL 83 Query: 74 DTPL 77 L Sbjct: 84 GCRL 87 >gi|205354377|ref|YP_002228178.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274158|emb|CAR39172.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629505|gb|EGE35848.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 188 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ L+ EI R G A+S +S+LE G ++ + L LD P +LL+P Sbjct: 22 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPTLETLWSLCVALDIPFARLLEP 75 >gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 119 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +ER+I + + RKE ++Q E+ R + ++S++E GKS + +I ++ L Sbjct: 5 KERLIPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64 Query: 76 PLWKLLKP 83 KLL+P Sbjct: 65 STDKLLRP 72 >gi|206579655|ref|YP_002241227.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206568713|gb|ACI10489.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 200 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ E+ R G A+S +S+LE+G +++ + L LD P +LL+P Sbjct: 34 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 87 >gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 186 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RKE LT ++ + TG + + +S++E G + + + LAH LD P+ + Sbjct: 6 NKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIPVGRFF 63 >gi|70734303|ref|YP_257943.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68348602|gb|AAY96208.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 209 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IRK KLT K++ R+G A S +S++E + +++ + + A L + +L P Sbjct: 27 LRTIRKNQKLTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALGVDIARLFTP 84 >gi|56708873|ref|YP_164916.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680558|gb|AAV97223.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 72 Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + IR+E L+Q+E+ +R Q+++S +ETGK +I + +A L + ++ KP Sbjct: 13 NIQRIRREKDLSQEEVAHRADIHQTYLSGVETGKRNPSILVVERIAKALGVDVSEIFKP 71 >gi|302518777|ref|ZP_07271119.1| DNA-binding protein [Streptomyces sp. SPB78] gi|318061623|ref|ZP_07980344.1| putative DNA-binding protein [Streptomyces sp. SA3_actG] gi|318075837|ref|ZP_07983169.1| putative DNA-binding protein [Streptomyces sp. SA3_actF] gi|302427672|gb|EFK99487.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 280 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +R EA L K++ R G+ +S +S LETGK T +D++ A D Sbjct: 17 LRELRTEAGLQGKDLAARLGWQRSKVSRLETGKQTPTVDDLATWAQATD 65 >gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 71 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R IR+ L QK + +TG +Q +S+ ETGK+ ID +A LD + L Sbjct: 7 IREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDL 61 >gi|116250392|ref|YP_766230.1| hypothetical protein RL0620 [Rhizobium leguminosarum bv. viciae 3841] gi|115255040|emb|CAK06114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 115 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK ++ KE+ ++G +Q ++SE+ETGK ++D + +A LD L Sbjct: 60 VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDL 111 >gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 153 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ+++ R + +S ETG++ +D ++A T D PL + Sbjct: 1 MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 104 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK A LTQ ++ RTGF IS ETG T +I+ ++ A L Sbjct: 11 RRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEAL 57 >gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 99 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 6 RRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVL 52 >gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 168 Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + +R+E KL+QKE+ + G + IS E G+STI D LA + + LL Sbjct: 1 MNRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLL 59 >gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 182 Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ A L+ E+ R G A+S +S+LE G +I+ + L L+ P +L++P Sbjct: 16 RQRAGLSLTEVARRAGVAKSTLSQLEAGNGNPSIETLWSLCVALNIPFARLMEP 69 >gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 141 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F N + +RKE ++Q+++ ++ IS+LE+GK+ +IDN+I+L L Sbjct: 1 MGFNNKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSL 58 >gi|152972701|ref|YP_001337847.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892309|ref|YP_002917043.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae NTUH-K2044] gi|330004503|ref|ZP_08304980.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150957550|gb|ABR79580.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544625|dbj|BAH60976.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536576|gb|EGF62908.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 200 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ E+ R G A+S +S+LE+G +++ + L LD P +LL+P Sbjct: 34 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 87 >gi|322834304|ref|YP_004214331.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169505|gb|ADW75204.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 182 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ A L+ E+ R G A+S +S+LE G +++ + L L+ P +L++P Sbjct: 16 RQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARLMEP 69 >gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 38/71 (53%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D+ L + + R R+ L+ E+ R G A+S +S+LETG +++ + LA Sbjct: 5 TDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAM 64 Query: 72 TLDTPLWKLLK 82 LD P+ +L+ Sbjct: 65 ALDVPVSRLIS 75 >gi|330835893|ref|YP_004410621.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4] gi|329568032|gb|AEB96137.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4] Length = 184 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 15/38 (39%), Positives = 25/38 (65%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 +I + R +R+ A LTQ E+ R G +QS+I+++E G Sbjct: 2 LIDTKDLRKMRESAGLTQSELAKRVGVSQSYIAKIEKG 39 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE L+ E+ G +Q +S E G+ I +DN++ LA L+T L Sbjct: 16 RKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDL 63 >gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length = 180 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ LT +++ R G +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61 >gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M] gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M] Length = 180 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ LT +++ R G +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61 >gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 415 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N ++ RK+ KLTQ+E+ + G A+S +S E G NI +I L+ ++ L L Sbjct: 8 IFSENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLMNCSLDNL 67 Query: 81 L 81 + Sbjct: 68 I 68 >gi|219666716|ref|YP_002457151.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536976|gb|ACL18715.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 110 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 26/36 (72%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 F N +N+RK+ K+TQ+++ R G ++IS++ETG Sbjct: 4 FGNTLKNLRKQHKITQRDLAERVGVDFTYISKIETG 39 >gi|222081923|ref|YP_002541288.1| Helix-turn-helix motif protein [Agrobacterium radiobacter K84] gi|221726602|gb|ACM29691.1| Helix-turn-helix motif protein [Agrobacterium radiobacter K84] Length = 93 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++R F +N RK TQ E+ R+G + +I ELE GK + ++ +I+A + Sbjct: 3 MIRSARDFGTLIKNKRKALGWTQAELATRSGTGERFIVELEAGKPSCQLEKALIVARAVG 62 Query: 75 TPLWKL 80 L L Sbjct: 63 CELADL 68 >gi|22124613|ref|NP_668036.1| hypothetical protein y0699 [Yersinia pestis KIM 10] gi|45440452|ref|NP_991991.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51594841|ref|YP_069032.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108808978|ref|YP_652894.1| putative transcriptional regulator [Yersinia pestis Antiqua] gi|108810767|ref|YP_646534.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145600549|ref|YP_001164625.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|153950502|ref|YP_001402542.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|153997475|ref|ZP_02022575.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162420428|ref|YP_001608296.1| DNA-binding protein [Yersinia pestis Angola] gi|165925798|ref|ZP_02221630.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936806|ref|ZP_02225373.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010118|ref|ZP_02231016.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214289|ref|ZP_02240324.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399645|ref|ZP_02305169.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420662|ref|ZP_02312415.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423333|ref|ZP_02315086.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467386|ref|ZP_02332090.1| DNA-binding protein [Yersinia pestis FV-1] gi|170025937|ref|YP_001722442.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186893849|ref|YP_001870961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930499|ref|YP_002348374.1| putative transcriptional regulator [Yersinia pestis CO92] gi|229839137|ref|ZP_04459296.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896626|ref|ZP_04511793.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229899701|ref|ZP_04514842.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900965|ref|ZP_04516089.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270489146|ref|ZP_06206220.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294505187|ref|YP_003569249.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|21957418|gb|AAM84287.1|AE013672_5 hypothetical [Yersinia pestis KIM 10] gi|45435309|gb|AAS60868.1| putative transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51588123|emb|CAH19729.1| putative transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108774415|gb|ABG16934.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108780891|gb|ABG14949.1| putative transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349110|emb|CAL22073.1| putative transcriptional regulatory protein [Yersinia pestis CO92] gi|145212245|gb|ABP41652.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289112|gb|EDM39192.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152961997|gb|ABS49458.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|162353243|gb|ABX87191.1| DNA-binding protein [Yersinia pestis Angola] gi|165915455|gb|EDR34065.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922410|gb|EDR39587.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991025|gb|EDR43326.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204521|gb|EDR49001.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961468|gb|EDR57489.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052149|gb|EDR63557.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057503|gb|EDR67249.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752471|gb|ACA69989.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] gi|186696875|gb|ACC87504.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] gi|229682304|gb|EEO78396.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229687193|gb|EEO79268.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695503|gb|EEO85550.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700404|gb|EEO88436.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262363249|gb|ACY59970.1| putative transcriptional regulatory protein [Yersinia pestis D106004] gi|262367180|gb|ACY63737.1| putative transcriptional regulatory protein [Yersinia pestis D182038] gi|270337650|gb|EFA48427.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294355646|gb|ADE65987.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|320016691|gb|ADW00263.1| putative transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 103 Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 +E + AI+ R +N+ +RK +LTQ +I R G ++ IS+ E G+S +D + Sbjct: 21 EETARAYAIVMLRKALLNSLVAVRKSKQLTQVDIAKRIGVSRQAISKFEKGESAPTLDTL 80 Query: 67 IILAHTLD 74 I +D Sbjct: 81 IGYTAAMD 88 >gi|325169000|ref|YP_004285747.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052813|dbj|BAJ83149.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 134 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER +F N R R L+ ++ N +++I ++E GK ++ID M +A L Sbjct: 34 ERFVFGANVRAGRNALGLSLTQMANLIDADRAYIGKVEHGKINVSIDRMSSIAELFRVHL 93 Query: 78 WKLLKP 83 ++LL+P Sbjct: 94 YELLQP 99 >gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] Length = 261 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 35/54 (64%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RKEA L+Q+ + + G ++ +S+ E+G+ST +I+N+ L+ L +L+K Sbjct: 10 LRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDELIK 63 >gi|224542992|ref|ZP_03683531.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM 15897] gi|224524130|gb|EEF93235.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M ++K ++ H S+ + + M+ R +RK T +++ NR +SWISE+E G++ Sbjct: 31 MKKKKIEDEHTSELLKYQGMLL----RQLRKNTSYTMEDVANRFCKTKSWISEIENGRNN 86 Query: 61 IN 62 I+ Sbjct: 87 IS 88 >gi|156741559|ref|YP_001431688.1| XRE family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232887|gb|ABU57670.1| transcriptional regulator, XRE family [Roseiflexus castenholzii DSM 13941] Length = 119 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ +LTQ E+ R G + S+IS +E G+S+ I ++ LA T + LL Sbjct: 16 RQRDRLTQAELGGRIGVSGSYISSIENGQSSARIADIEALAVVFRTTAFDLL 67 >gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 179 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK L+ ++I RTG +Q ++S++E K++ +I + +A+ L PL LL Sbjct: 6 NIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFLL 62 >gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila] gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] Length = 101 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL-WKLL 81 RKE +T + + G +Q +S E G + IN+D+++++A L+TP+ W L Sbjct: 16 RKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPIDWFFL 68 >gi|262041673|ref|ZP_06014865.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937864|ref|YP_003441923.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290513088|ref|ZP_06552451.1| DNA-binding protein [Klebsiella sp. 1_1_55] gi|259040935|gb|EEW42014.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288892573|gb|ADC60891.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289774470|gb|EFD82475.1| DNA-binding protein [Klebsiella sp. 1_1_55] Length = 182 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ E+ R G A+S +S+LE+G +++ + L LD P +LL+P Sbjct: 16 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|84502066|ref|ZP_01000224.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597] gi|84390061|gb|EAQ02695.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597] Length = 69 Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LTQ+++ +R QS+++ +E+G+ I++ +I+LA ++ LL Sbjct: 5 RKAAGLTQEQLADRLKCHQSFVARVESGERRIDVIELIVLARAMEVDASTLL 56 >gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 183 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] Length = 195 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 24/33 (72%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R IRKE +TQ+E+ + G Q++I++LE+GK Sbjct: 16 IRKIRKELGITQEELARKAGVTQAYIAKLESGK 48 >gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains [Thermococcus kodakarensis KOD1] Length = 192 Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust. Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 5/42 (11%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-----STIN 62 R IRKE +TQ+E+ + G Q++I++LE GK ST+N Sbjct: 13 IRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVDPRLSTLN 54 >gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 183 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 183 Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|225619797|ref|YP_002721054.1| putative transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225214616|gb|ACN83350.1| putative transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 139 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R IRK T EI +G + ++ +E GK I+I N+ +A+ L+ P+ L Sbjct: 41 NNIRAIRKSQTKTISEIAEMSGISAKYLQSVEVGKRNISITNLNKIANALNVPIGILF 98 >gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 104 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 11 RRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVL 57 >gi|150377745|ref|YP_001314340.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032292|gb|ABR64407.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 90 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R F + R RK TQ E+ R+G + +I ELE+GK + ++ +I+A T+ Sbjct: 1 MFRSARDFGDAVREKRKVLGWTQAELATRSGTGERFIVELESGKRSCQLEKALIVARTVG 60 Query: 75 TPLWKL 80 + L Sbjct: 61 IEIGDL 66 >gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 108 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 36/59 (61%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N +N RK KLTQ+E+ ++ G + +++ E+GK ++ + + ++ LDTP+ K Sbjct: 7 SNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSDFFK 65 >gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 158 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] Length = 187 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 24/34 (70%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 + R IRKE +TQ+E+ + G Q++I++LE GK Sbjct: 12 DIRRIRKELGITQEELARKAGVTQAYIAKLEAGK 45 >gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] Length = 268 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +RK+ +Q+ + R G ++ +S+ E+G S +I+N++ L+ + L + Sbjct: 1 MTFQERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 189 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 M+F + R +RK++ LTQ E +TG +S + E+GK N + +A Sbjct: 1 MVFADRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVA 51 >gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 254 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER I N R +R + LT E+ R+G + + IS++E + ++ + LA TLD P+ Sbjct: 65 ERAI-AGNVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVPV 123 Query: 78 WKLLK 82 L + Sbjct: 124 TSLFR 128 >gi|269793184|ref|YP_003318088.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100819|gb|ACZ19806.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 124 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R +AK+ Q E+ R G +Q+++S +ETGK + + + A L L + Sbjct: 1 MRHGERIRRARLKAKMEQGELARRIGISQAFLSRIETGKRGCSSEILERAARALGVGLEE 60 Query: 80 LLKP 83 L P Sbjct: 61 LCSP 64 >gi|94496789|ref|ZP_01303364.1| transcriptional regulator, XRE family protein [Sphingomonas sp. SKA58] gi|94423802|gb|EAT08828.1| transcriptional regulator, XRE family protein [Sphingomonas sp. SKA58] Length = 73 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 15/62 (24%), Positives = 37/62 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R++ ++TQ+E+ +RTG + ++ +E + +++I + LA +D +L Sbjct: 6 VLARNLRLLRQKKEITQEELADRTGLSSRYVGSIERARVSVSITVLGKLALAMDVDPCEL 65 Query: 81 LK 82 ++ Sbjct: 66 IR 67 >gi|332291138|ref|YP_004429747.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] gi|332169224|gb|AEE18479.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] Length = 490 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF R IR E L+ + TG ++S+++E+E GK D ++ L+ LD P Sbjct: 7 KLIFGLKLRQIRTEKNLSLFGLSKLTGLSKSYLNEIENGKKYPKPDKIVTLSEKLDIPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1] Length = 119 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +ER++ + + RKE ++Q E+ R + ++S++E GKS + +I ++ L Sbjct: 5 KERLVPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64 Query: 76 PLWKLLKP 83 KLL+P Sbjct: 65 STDKLLRP 72 >gi|257869745|ref|ZP_05649398.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|309778441|ref|ZP_07673356.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|257803909|gb|EEV32731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|308913804|gb|EFP59629.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 69 Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E +I N + +RKE KL+Q E+ G +++ IS +ETG+ ++L LD Sbjct: 1 MNEHLILKNRLKEVRKEKKLSQTELAEMVGVSRNTISSIETGQFNPTAKLALVLCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|258406482|ref|YP_003199224.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798709|gb|ACV69646.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + LTQ E+ +TG AQS +S +E GK I D LA LD Sbjct: 62 LRAARNRSGLTQIELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLD 110 >gi|163797612|ref|ZP_02191561.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199] gi|159177087|gb|EDP61649.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199] Length = 125 Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 R DE + A + +R++ + R R+ L+ E+ R G +Q+++S+LETGK Sbjct: 45 RLASDEEEMLPAAMVDRLLAGESALRVWREHRGLSASELAERAGLSQAYVSQLETGKRDG 104 Query: 62 NIDNMIILAHTL 73 ++ M LA L Sbjct: 105 SVAAMGSLAQAL 116 >gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] Length = 259 Score = 38.1 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +R+E ++Q+E+ N G ++ + + E+G S NIDN++ ++ L L Sbjct: 1 MFEERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYL 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1] Length = 222 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R++ LT E R G +++ +S++E +++ ++ + +LA D P+ L + Sbjct: 42 NVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTSLFR 99 >gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 104 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 11 RRYRKLAGLTQAQLAERTGFDPKTISRFETNTYTPSIDAIMAFAQVL 57 >gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++ R +R+E+ LTQ+++ TG +S+++++E G ID M +A L L Sbjct: 6 RILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65 Query: 79 KLLKP 83 +L + Sbjct: 66 QLFEG 70 >gi|330823701|ref|YP_004387004.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329309073|gb|AEB83488.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 77 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 37/60 (61%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R+ R +L+Q+E+ +R G +++I++LE ++ + ++ +A L+ PL +L+ Sbjct: 11 FADELRSRRAALRLSQEELAHRAGINRTYIAKLELARNQPTLTVLLRVAEALEVPLPELI 70 >gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 114 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 MIF + +R E KL+Q + + ++ IS+ ETG+ST +++N+I +A L L Sbjct: 5 MIFSTQLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSL 62 >gi|255320501|ref|ZP_05361682.1| transcriptional regulator, XRE family [Acinetobacter radioresistens SK82] gi|262378393|ref|ZP_06071550.1| transcriptional regulator [Acinetobacter radioresistens SH164] gi|255302473|gb|EET81709.1| transcriptional regulator, XRE family [Acinetobacter radioresistens SK82] gi|262299678|gb|EEY87590.1| transcriptional regulator [Acinetobacter radioresistens SH164] Length = 182 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R++A L+ E+ R G A+S +S+LE + +++ + L LD P KL Sbjct: 7 IVAKGLQRERQKAGLSLTEVARRAGIAKSTLSQLEAAQGNPSLETLWALCVALDIPFAKL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 186 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R R L+ E+ R G A+S +S+LE+G +++ + LA L P +L Sbjct: 11 IISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSRL 70 Query: 81 LKP 83 + P Sbjct: 71 VDP 73 >gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 80 Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R++ L+Q+++ RT S+I ++E G+ +++ N++ +AH LDT L+ Sbjct: 16 FGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHALDTDAGGLV 75 >gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 259 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 17/30 (56%), Positives = 23/30 (76%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKS 59 RKEA LTQ E+ + G AQ+ IS+LE+GK+ Sbjct: 11 RKEAHLTQSELAEKVGIAQTAISQLESGKT 40 >gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 251 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 25/42 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 I N+ + IRK K+TQKE+ TGF Q+ IS E G ++ Sbjct: 3 ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLD 44 >gi|221632745|ref|YP_002521967.1| Helix-turn-helix domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221156190|gb|ACM05317.1| Helix-turn-helix domain protein [Thermomicrobium roseum DSM 5159] Length = 154 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F R R+ A+L+Q + R GF S++S LE+G+ + ++ LA L+ Sbjct: 3 FFGQLLRRYRESARLSQSRLAQRAGFDHSYVSRLESGRRAPTREAILRLAEALE 56 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 35/54 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RK +TQ+E+ +R G ++ +++ ETG+S+ +ID + +L L T L +L+ P Sbjct: 20 RKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLDELIVP 73 >gi|111021488|ref|YP_704460.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821018|gb|ABG96302.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 187 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ R +A LT +++ +TG +Q ++S+ E G S ++ N+ +A L T LL+ Sbjct: 17 RSARHDAGLTLRDVAAKTGLSQPFLSQAENGHSVPSVMNLHRVAQVLGTTAHALLE 72 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +RK+A ++Q+++ + G ++ +++ ETG +I+N++ ++ D + Sbjct: 3 MTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDD 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|323528479|ref|YP_004230631.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385481|gb|ADX57571.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 215 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 26/51 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R RK LT E+ R+G A S IS+ E G + D LAH+L+ Sbjct: 27 GHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77 >gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 104 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 11 RRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDALMEFAQVL 57 >gi|91787363|ref|YP_548315.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91696588|gb|ABE43417.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 201 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR R +A +R+ R RK +LT K++ R+G A S +S++E G+ + Sbjct: 1 MPRSARTPAAAPEA---DRVQLGLRLREHRKARRLTLKDLSGRSGVALSTLSKMELGQMS 57 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + + +A L + +LL Sbjct: 58 VSYEKLAAVARALSLDVGQLL 78 >gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017] Length = 183 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 183 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|170692929|ref|ZP_02884090.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141927|gb|EDT10094.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 217 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 26/51 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R RK LT E+ R+G A S IS+ E G + D LAH+L+ Sbjct: 29 GHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 79 >gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 183 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62] gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 183 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|118497388|ref|YP_898438.1| transcriptional regulator [Francisella tularensis subsp. novicida U112] gi|195536079|ref|ZP_03079086.1| helix-turn-helix protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779183|ref|ZP_03246529.1| helix-turn-helix DNA binding protein [Francisella novicida FTG] gi|118423294|gb|ABK89684.1| transcriptional regulator [Francisella novicida U112] gi|194372556|gb|EDX27267.1| helix-turn-helix protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744983|gb|EDZ91281.1| helix-turn-helix DNA binding protein [Francisella novicida FTG] Length = 70 Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ LTQ ++ +G +I E+E GKST +I +I LA +L Sbjct: 16 RKARKKQGLTQADLAGISGLGTRFIGEVENGKSTAHIGKVIQLASSLG 63 >gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 180 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ RK+ LT K + + G ++IS++ETGK+ +I + +A +LD + Sbjct: 1 MNMAEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRD 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8] gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8] gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 183 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|307727246|ref|YP_003910459.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587771|gb|ADN61168.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 215 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 26/51 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R RK LT E+ R+G A S IS+ E G + D LAH+L+ Sbjct: 27 GHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77 >gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 183 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|221213709|ref|ZP_03586683.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166498|gb|EED98970.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 81 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +F +RK +Q+++ +G A+S++ +E G+ I + N+ +LA TL+ P Sbjct: 8 LFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVP 63 >gi|146305038|ref|YP_001192354.1| XRE family transcriptional regulator [Metallosphaera sedula DSM 5348] gi|145703288|gb|ABP96430.1| transcriptional regulator, XRE family [Metallosphaera sedula DSM 5348] Length = 184 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Query: 21 IFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +F+N + R +R+ A LTQ E+ R G +QS I+++E GK Sbjct: 1 MFINLSDIRKMREMAGLTQTELARRVGVSQSLIAKIEKGK 40 >gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 183 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio nitroreducens DSM 19672] gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 39/63 (61%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R+IRK +T +++ +TGF +S+IS++E GK++ +I ++ + + + + + Sbjct: 1 MGYGEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISE 60 Query: 80 LLK 82 L + Sbjct: 61 LFE 63 >gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 183 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|88801079|ref|ZP_01116626.1| transcriptional regulator, putative [Reinekea sp. MED297] gi|88776158|gb|EAR07386.1| transcriptional regulator, putative [Reinekea sp. MED297] Length = 496 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R I + R+ A L+ K++ RT + S++SE+E GK + +++LAH L+ Sbjct: 9 RFILGIKIKQFRQNAGLSLKQLSERTQLSVSYLSEIEKGKKYPKPEKIVLLAHALN 64 >gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 112 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +F +++RKEAKLTQK+I ++ GF+Q + E+GK Sbjct: 1 MFSERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGK 38 >gi|295095052|emb|CBK84142.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 182 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ EI R G A+S +S+LE+G +++ + L LD P +LL+P Sbjct: 16 RLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|296105405|ref|YP_003615551.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059864|gb|ADF64602.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 182 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ EI R G A+S +S+LE+G +++ + L LD P +LL+P Sbjct: 16 RLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 183 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|296122391|ref|YP_003630169.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014731|gb|ADG67970.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 82 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F NFR RK LTQK++ + G + +S +E+ +S+ + + + + A + Sbjct: 7 RTVFARNFRLQRKARGLTQKQLAEKIGVTAAQVSHIESQRSSPSFEVIFMSARVFNLSPA 66 Query: 79 KLLKP 83 LL P Sbjct: 67 ALLIP 71 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N ++ RK LTQ+++ R G ++ +++ ETG ST ++ N LA LD L L+ Sbjct: 4 SNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 61 >gi|259416828|ref|ZP_05740748.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259348267|gb|EEW60044.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 216 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Query: 5 KRDEPHLSD---AILRE------RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 K+D P SD A+L + R+ + +R A +T ++ RTG A S I ++E Sbjct: 6 KKDSPFSSDVQAALLDDSEKQQIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIE 65 Query: 56 TGKSTINIDNMIILAHTLDTPLWKLL 81 GK + + +N++ LA L KL+ Sbjct: 66 NGKVSPSFENLLRLARGYGVGLEKLI 91 >gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 201 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++RK+ +T + TG +Q+ +S++E G + + + LAH LD P+ + Sbjct: 22 NKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIPVGRFF 79 >gi|167749249|ref|ZP_02421376.1| hypothetical protein EUBSIR_00200 [Eubacterium siraeum DSM 15702] gi|167657778|gb|EDS01908.1| hypothetical protein EUBSIR_00200 [Eubacterium siraeum DSM 15702] Length = 68 Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 RKEA LTQ+E R+G ++ ELE GK T+ +D Sbjct: 12 RKEAGLTQEEFAMRSGLGLRFVRELEQGKETVRMD 46 >gi|299133247|ref|ZP_07026442.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593384|gb|EFI53584.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 76 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N +R E ++Q+E+ + +S++S+LETGK+ + ++ M +A L Sbjct: 4 RRTFAANVVKLRAERGISQEELAHLAEINRSYLSDLETGKTYVGLEIMGKIADVLGVEGA 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322] Length = 183 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R R L+ E+ R G A+S +S+LE+G +++ + LA L P +L Sbjct: 26 IISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSRL 85 Query: 81 LKP 83 + P Sbjct: 86 VDP 88 >gi|224371939|ref|YP_002606105.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223694658|gb|ACN17941.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 84 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 ++IRK+ +TQ ++ + TG + +IS++E GK T +D + L L ++ + P Sbjct: 21 KDIRKKKNMTQGDLADITGTSVKFISDVERGKETTQMDKVFDLVRALGIQIYLTIDP 77 >gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] Length = 189 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R KLT KE+ RT + ++S+LE G +T+ ID++ +A LD L Sbjct: 10 KKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNL 60 >gi|34540627|ref|NP_905106.1| transcriptional regulator [Porphyromonas gingivalis W83] gi|34396941|gb|AAQ66005.1| transcriptional regulator, putative [Porphyromonas gingivalis W83] Length = 74 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 30/51 (58%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 ++ R I + +RK+ KLTQ ++ + G ++ ELE GK+T+ +D + Sbjct: 1 MQARTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVRELEQGKTTLRLDKV 51 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +R LT KE+ +T + S++S++E G S ++I + +AH L+T L Sbjct: 11 NKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETEL 64 >gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] Length = 295 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 38/62 (61%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++IRK+ ++Q+ + + G ++ +++ ETG +I+NMI +++ + + + Sbjct: 1 MTFAENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|288801315|ref|ZP_06406769.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331698|gb|EFC70182.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 74 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 R I + +RK+ KLTQ ++ + G ++ ELE GK+T+ +D + Sbjct: 4 RTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVQELEQGKTTLRLDKV 51 >gi|222055496|ref|YP_002537858.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564785|gb|ACM20757.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 117 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTL 73 L E F++ F R A +TQ E+ R G QS I+ LE+ GK + +I + AH L Sbjct: 24 LDEEFRFLDEFLKARAAAGVTQAEVAERIGTTQSAIARLESGGGKHSPSIATLQKYAHAL 83 Query: 74 DTPL 77 L Sbjct: 84 GCRL 87 >gi|217970536|ref|YP_002355770.1| XRE family transcriptional regulator [Thauera sp. MZ1T] gi|217507863|gb|ACK54874.1| transcriptional regulator, XRE family [Thauera sp. MZ1T] Length = 85 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 38/64 (59%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F + +R+ +Q+ + +G A+S++ +E G+ I + N+I LA+ L+ P Sbjct: 8 RVLFGKHLAELRRSRGWSQEYLALESGLARSYLGGVERGQRNIALLNIIRLANALELPPS 67 Query: 79 KLLK 82 KLL+ Sbjct: 68 KLLE 71 >gi|217980119|ref|YP_002364169.1| helix-turn-helix domain protein [Thauera sp. MZ1T] gi|217508290|gb|ACK55075.1| helix-turn-helix domain protein [Thauera sp. MZ1T] Length = 82 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R+E +Q+++ +G +S+I+ +E I++DN+ LA TL P Sbjct: 15 RAVLSANLVRFRRERGWSQEKLAFESGLDRSFIAHVERQARNISLDNIERLARTLGVPFH 74 Query: 79 KLLKP 83 LL P Sbjct: 75 VLLTP 79 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N ++ RK LTQ+++ R G ++ +++ ETG ST ++ N LA LD L L+ Sbjct: 7 SNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 64 >gi|170754823|ref|YP_001782088.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120035|gb|ACA43871.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 81 Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+E ++Q ++ G ++S++SE+E+GK T ++D + +A L+ LL Sbjct: 4 NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEVCTALLL 60 >gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] Length = 122 Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R+ LTQ+E +TGF ++IS LE G S +N+I+L + L+ Sbjct: 21 IKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVS 71 >gi|224826557|ref|ZP_03699658.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224601158|gb|EEG07340.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 81 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 4/65 (6%) Query: 23 VNNFRNIRKEAKL----TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 V+ F + +EA+L +Q+E+ R ++++S +E G+S I +D++ LA L+T Sbjct: 4 VSAFGRVVREARLAKGWSQEELAERASLHRNFVSLVERGQSKIALDSLFFLADALETTAS 63 Query: 79 KLLKP 83 +LL+ Sbjct: 64 ELLRA 68 >gi|167753959|ref|ZP_02426086.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216] gi|167658584|gb|EDS02714.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216] Length = 106 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +E + F++N R +RKE ++T +E+ R +S +S +E+G++ + + M I+ + L+ Sbjct: 40 QEEIKFISNKIRELRKEKQMTVQELAYRCDMERSNMSRIESGRTNLTVKTMCIICNALNV 99 Query: 76 PLWKLLK 82 L +++ Sbjct: 100 NLRDIIR 106 >gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1] Length = 290 Score = 37.7 bits (86), Expect = 0.46, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 44/69 (63%), Gaps = 2/69 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A+L R+ + + R +++K++ + G ++ ++++LE G++ ++++ + +LA + Sbjct: 8 AVLARRL--GDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAM 65 Query: 74 DTPLWKLLK 82 DTP+ +L++ Sbjct: 66 DTPITELIE 74 >gi|317475652|ref|ZP_07934913.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908222|gb|EFV29915.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 104 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 10/59 (16%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ILRER RKE KLTQK++ + G QS+I+ +E G++ I + + +A L Sbjct: 46 ILRER----------RKELKLTQKQLAQKIGKEQSYIARVEKGEADIQLSSFFRIARAL 94 >gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] Length = 181 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ LT KE+ TG + S++S++E G S++ I ++ +A L+ P+ + Sbjct: 12 LRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEFF 64 >gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 189 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+ L+ E+ R G A+S +S+LETG +++ + LA LD P+ +L+ Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVSRLIS 75 >gi|302540026|ref|ZP_07292368.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302457644|gb|EFL20737.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 207 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + D P D ER+I V R R+ A L+ E+ R G +++ +S++E ++ Sbjct: 7 PAEESDNP---DDKALERVIAVRA-REYRQAAGLSVGEMAQRVGISKAMLSKIENAQTAC 62 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + LA LD P+ L + Sbjct: 63 SLTTLSRLARGLDVPVTALFR 83 >gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104] Length = 183 Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|126724437|ref|ZP_01740280.1| Transcriptional Regulator, XRE family protein [Rhodobacterales bacterium HTCC2150] gi|126705601|gb|EBA04691.1| Transcriptional Regulator, XRE family protein [Rhodobacterales bacterium HTCC2150] Length = 199 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 32/53 (60%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++ R+ L+Q+E+ R+G QS IS++E+ + + ++ LAH LD L Sbjct: 11 SLKSARENKGLSQRELSARSGVPQSHISKIESNAVDLRLSSLASLAHALDLEL 63 >gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1] Length = 184 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R R+ + ++ E+ R G A+S +S+LE+G +++ + L LD + +LL P Sbjct: 13 SLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQLLDP 71 >gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] Length = 108 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 +N R +R+ AKL+Q+E+ +++G +++ IS LE G + I +I +A L T + +L+ Sbjct: 6 DNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEELI 64 >gi|124010434|ref|ZP_01695075.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123983471|gb|EAY23951.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 504 Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+IF + +R E KL+ E+ TG + S+++E+E GK + + LA TL+ Sbjct: 9 RLIFGVKVKQLRTEKKLSLAEVSKATGISISYLNEIEKGKKYPKPNKIATLAQTLEV 65 >gi|258516790|ref|YP_003193012.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780495|gb|ACV64389.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 66 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R IR+ +TQ E+ N TG+ QS IS++E+G + + A L + +LL+ Sbjct: 4 NKIRIIRESKHMTQDELGNLTGYKQSQISKIESGSREVKSRELGKFAAALGVKITELLEE 63 >gi|296125780|ref|YP_003633032.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017596|gb|ADG70833.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 139 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK T EI +G + ++ +E GK I+I N+ +A TL+ P+ L Sbjct: 42 NIRAIRKSQMKTISEIAEVSGISSKYLQSVEVGKRNISITNLNKIAKTLNVPIAVLF 98 >gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 186 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A L+ EI R G A+S +S+LE G+ +I+ + + L+ P +L+ Sbjct: 19 RKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLI 70 >gi|238025656|ref|YP_002909888.1| Transcriptional regulator [Burkholderia glumae BGR1] gi|237880321|gb|ACR32652.1| Transcriptional regulator [Burkholderia glumae BGR1] Length = 101 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPL 77 M+F + +R+ +TQK++ R G + S++SE+ETG K +I ID + A P+ Sbjct: 1 MLF-QALKLLRRYHGMTQKDLAARLGISNSYLSEIETGVKKDSITIDLLEKYAAVFGIPV 59 Query: 78 WKLL 81 LL Sbjct: 60 SSLL 63 >gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11] gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11] Length = 184 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 187 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A L+ EI R G A+S +S+LE G+ +I+ + + L+ P +L+ Sbjct: 20 RKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLI 71 >gi|218290296|ref|ZP_03494442.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239651|gb|EED06843.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN R +R+ + E+ R+G A+ IS+LE+G + + LA L P L Sbjct: 40 IVSNNLRTLRQARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSDL 99 Query: 81 LK 82 ++ Sbjct: 100 IQ 101 >gi|27376700|ref|NP_768229.1| hypothetical protein bsl1589 [Bradyrhizobium japonicum USDA 110] gi|27349841|dbj|BAC46854.1| bsl1589 [Bradyrhizobium japonicum USDA 110] Length = 78 Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 28/45 (62%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +RK A L Q ++ N+ G QSW++ LE+G+ I++ +I L + Sbjct: 20 LRKGAGLRQVDLANKLGVYQSWVTHLESGQRRIDVVELIELGRAI 64 >gi|213963046|ref|ZP_03391305.1| transcriptional regulator, y4mF family [Capnocytophaga sputigena Capno] gi|213954387|gb|EEB65710.1| transcriptional regulator, y4mF family [Capnocytophaga sputigena Capno] Length = 66 Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK+ KLTQ E+ R G ++ ELE GKST+ +D + Sbjct: 11 RKQLKLTQTELAMRAGVGLRFVRELEQGKSTLRLDKV 47 >gi|305682108|ref|ZP_07404912.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266] gi|305658581|gb|EFM48084.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266] Length = 274 Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 31/44 (70%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R+EA LTQ ++ R G QS+IS+LE+G+ ++ ++ + +A +L Sbjct: 18 REEAALTQSQLAQRLGKPQSFISKLESGERSLRVEELPQIAQSL 61 >gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] Length = 178 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R IRK +T +++ +TGF +S+IS++E GK++ +I ++ + L + + Sbjct: 1 MSYGAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISE 60 Query: 80 LLK 82 L + Sbjct: 61 LFE 63 >gi|16519701|ref|NP_443821.1| transcription regulator; symbiotic plasmid stability locus [Sinorhizobium fredii NGR234] gi|2496605|sp|P55411|Y4DL_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dL gi|7465606|pir||T02775 y4dL protein - Rhizobium sp. plasmid pNGR234a gi|2182355|gb|AAB91641.1| transcription regulator; symbiotic plasmid stability locus [Sinorhizobium fredii NGR234] Length = 196 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R+ K++Q+E+ R+G QS IS++E G + +++ +A LD Sbjct: 8 ITQQLRAAREAQKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALD 60 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK A +TQ+++ G Q +S +E GKS ++D ++ +A ++ PL L + Sbjct: 12 IRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAPLPNLFE 68 >gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 184 Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|167851665|ref|ZP_02477173.1| Transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] Length = 72 Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 30/51 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +RK+A LTQ ++ + G QS++S++E G+ +++ + +TP Sbjct: 14 LKQVRKDAGLTQVQLAEKLGRGQSYVSKVERGEQYLDVLEFVEWCEACNTP 64 >gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] Length = 193 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R++ LT E+ R G A+S +S+LE G +++ + LA LD P+ +L+ Sbjct: 22 SIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLIA 79 >gi|153932832|ref|YP_001384724.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936860|ref|YP_001388245.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|152928876|gb|ABS34376.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932774|gb|ABS38273.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 81 Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+E ++Q ++ G ++S++SE+E+GK T ++D + +A L+ LL Sbjct: 4 NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEVCTSLLL 60 >gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 150 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IR+E KLTQ E+ N G +Q S ET K+ ++N++ LA+ +T Sbjct: 7 NLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNT 57 >gi|295094888|emb|CBK83979.1| Helix-turn-helix. [Coprococcus sp. ART55/1] Length = 66 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 24/37 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RKEA LTQ+E R+G ++ ELE GK T+ +D + Sbjct: 12 RKEAGLTQEEFAIRSGLGLRFVRELEQGKETVRMDKV 48 >gi|149927186|ref|ZP_01915443.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp. MED105] gi|149824125|gb|EDM83346.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp. MED105] Length = 257 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++R K++Q ++ R G +Q +S +ETGK++ + + ++ L LD PL Sbjct: 14 LRDLRARQKISQLDLALRVGVSQRHLSCIETGKASASKEMLLALLEGLDAPL 65 >gi|317501888|ref|ZP_07960073.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896778|gb|EFV18864.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 69 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N + +RKE KL+Q E+ G +++ IS +ETG+ ++L LD Sbjct: 3 EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|94972429|ref|YP_595647.1| hypothetical protein LIC031 [Lawsonia intracellularis PHE/MN1-00] gi|94731966|emb|CAJ53983.1| NA [Lawsonia intracellularis PHE/MN1-00] Length = 93 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +N R+E L++ + +G SW+ LE GKS I + +I++A L P Sbjct: 14 IKNFREEQGLSRYIVAKESGLDSSWLRRLEDGKSGIRTETLILIARGLKLP 64 >gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 190 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R IRKE +TQ+E+ + G Q++I++LE GK Sbjct: 13 IRRIRKELGITQEELAEKAGVTQAYIAKLEAGK 45 >gi|119385893|ref|YP_916948.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376488|gb|ABL71252.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 85 Score = 37.7 bits (86), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF +N R R+ L+Q+E+ +R +++IS LE +ID + LA L+ Sbjct: 4 REIFAHNLRAARQARGLSQEELAHRADIDRTYISSLERRVYGASIDVVDRLASVLEMEAS 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 105 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 V R RK LTQ + + G QS IS++E GK + + + + +A LD Sbjct: 5 IVRKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLD 57 >gi|225374410|ref|ZP_03751631.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans DSM 16841] gi|225213648|gb|EEG96002.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans DSM 16841] Length = 86 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 ++ HL+ L R V ++ RK +TQ+ + R G +S IS E+GK ++D + Sbjct: 11 EKKHLAGQQLTPRYEVVQQLKDARKAQDMTQEVLAERVGTKKSNISRFESGKYNPSLDFL 70 Query: 67 IILAHTL 73 I +A +L Sbjct: 71 IKVAGSL 77 >gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104] gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor domain [Mycobacterium avium 104] Length = 178 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ LT + + +TG +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61 >gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 199 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK +T + + TG +Q+ +S++E G + + + LAH LD P+ + Sbjct: 20 NKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAHGLDVPVGRFF 77 >gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 71 Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN RN+R EA LTQ+E+ + G + ++ +E K + ++ +A L PL + Sbjct: 7 NNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64 >gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] Length = 196 Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R+ K++Q+E+ R+G QS IS++E G + +++ +A LD Sbjct: 8 ITQQLRAAREARKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALD 60 >gi|167648136|ref|YP_001685799.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350566|gb|ABZ73301.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 106 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R LT + R G ++S++SELE+G T +I+ + A D P+ L+ Sbjct: 4 NALRLVRVYHNLTPADASARLGISRSYLSELESGNKTASIEVLQKYAKAFDMPVSSLM 61 >gi|220920643|ref|YP_002495944.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945249|gb|ACL55641.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 138 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R IRK LTQ+++++ TG QS+ISE+E+ + + LA L Sbjct: 80 LRAIRKHKGLTQQQLQDATGLPQSYISEIESSTKRASAEAKAKLAQAL 127 >gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA] gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA] Length = 250 Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---L 77 I ++ + +RK KLTQK++ TGF Q+ IS E G ++ ++ I A L+ L Sbjct: 3 ILGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYL 62 Query: 78 WKLLKP 83 + L KP Sbjct: 63 FDLAKP 68 >gi|184159797|ref|YP_001848136.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211391|gb|ACC58789.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509710|gb|ADX05164.1| transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 182 Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 151 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 39/81 (48%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR+ + +L D L+ I +++R L+QK + ++G + +I +E G Sbjct: 1 MPRKPVNINNLDDETLKSLAIIGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQN 60 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I + ++ L+ P + +L Sbjct: 61 ATIGILKRISDALEVPFYSIL 81 >gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ LT + + +TG +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61 >gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 81 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 35/58 (60%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK+AKL+Q+E+ + +G +++IS +E G I++ N++ + L + ++ Sbjct: 13 DRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSITGVLGVDVGDIV 70 >gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 7/82 (8%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + D+ L D ++R R+ R +R + +E+ R +QS +S +ETG+ Sbjct: 2 LPMTQEDDGDL-DGLVRRRI------RALRVAQGWSLEELAARARLSQSTLSRIETGRRR 54 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 + +D ++ LA LDT L +L++ Sbjct: 55 LALDQLVTLARALDTSLDQLVE 76 >gi|262280440|ref|ZP_06058224.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258218|gb|EEY76952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 182 Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] Length = 193 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R++ LT E+ R G A+S +S+LE G +++ + LA LD P+ +L+ Sbjct: 22 SIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLIA 79 >gi|323519724|gb|ADX94105.1| hypothetical protein ABTW07_3688 [Acinetobacter baumannii TCDC-AB0715] Length = 182 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|299768445|ref|YP_003730471.1| Helix-turn-helix family protein [Acinetobacter sp. DR1] gi|298698533|gb|ADI89098.1| Helix-turn-helix family protein [Acinetobacter sp. DR1] Length = 182 Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus] gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus] Length = 82 Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I +NN ++ RKE +Q+E+ N+ + IS +E GK I I +A L L Sbjct: 10 EFIIMINNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDL 69 Query: 78 WKLL 81 KL Sbjct: 70 NKLF 73 >gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 112 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + +TQ + G + S S +E+GK+ IN+ ++ +A LDT + LL Sbjct: 12 IREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTIDSLL 67 >gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 189 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 >gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145] Length = 107 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + IRK+ KLTQ+E+ ++G + IS +E G +++N L L+ L Sbjct: 9 LFCARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNVSADYL 68 Query: 81 L 81 L Sbjct: 69 L 69 >gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104] Length = 197 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R+E L+ E+ R+G ++ +S++E G ++ + +L LD P +L Sbjct: 11 LVARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGNPTVETLALLGAALDMPARRL 70 Query: 81 L 81 L Sbjct: 71 L 71 >gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf] gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf] gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 189 Score = 37.4 bits (85), Expect = 0.62, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 >gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 189 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 >gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 189 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 >gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 117 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE K+TQ+++ G +QS I +E + + D +I LA+TL+T + LL Sbjct: 9 LRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYLL 61 >gi|260550240|ref|ZP_05824453.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406768|gb|EEX00248.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 182 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|239503877|ref|ZP_04663187.1| Helix-turn-helix family protein [Acinetobacter baumannii AB900] Length = 182 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 189 Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60 >gi|293610621|ref|ZP_06692921.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826965|gb|EFF85330.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123811|gb|ADY83334.1| DNA-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 182 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] Length = 186 Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 + RKE +TQ+E+ R G Q++I++LETGK Sbjct: 13 IKRFRKELGITQEELAQRAGVTQAYIAKLETGK 45 >gi|224535292|ref|ZP_03675831.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus DSM 14838] gi|224523100|gb|EEF92205.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus DSM 14838] Length = 103 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R+ RK+ K+TQ+E+ + G A+S+I+ +E G++ I I + +A L Sbjct: 48 RDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARAL 94 >gi|169634707|ref|YP_001708443.1| hypothetical protein ABSDF3388 [Acinetobacter baumannii SDF] gi|169794401|ref|YP_001712194.1| hypothetical protein ABAYE0206 [Acinetobacter baumannii AYE] gi|213159023|ref|YP_002321021.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215481956|ref|YP_002324138.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|260556833|ref|ZP_05829050.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301345186|ref|ZP_07225927.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510677|ref|ZP_07235914.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301595815|ref|ZP_07240823.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332854786|ref|ZP_08435549.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868898|ref|ZP_08438475.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332872792|ref|ZP_08440757.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|169147328|emb|CAM85189.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|169153499|emb|CAP02656.1| conserved hypothetical protein [Acinetobacter baumannii] gi|193078630|gb|ABO13673.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213058183|gb|ACJ43085.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213989083|gb|ACJ59382.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|260409439|gb|EEX02740.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|332727788|gb|EGJ59192.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733046|gb|EGJ64247.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332738953|gb|EGJ69815.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 182 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P +L Sbjct: 7 IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66 Query: 81 LK 82 ++ Sbjct: 67 ME 68 >gi|163756345|ref|ZP_02163459.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1] gi|161323697|gb|EDP95032.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1] Length = 492 Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++IF + IR + L+ + TG ++S+++E+E GK D ++IL+ LD P Sbjct: 7 KLIFGLKLKQIRTDKNLSLFGLSKITGLSKSYLNEIEKGKKYPKPDKIVILSEKLDVP 64 >gi|86138032|ref|ZP_01056607.1| probable transcriptional regulator [Roseobacter sp. MED193] gi|85825059|gb|EAQ45259.1| probable transcriptional regulator [Roseobacter sp. MED193] Length = 233 Score = 37.4 bits (85), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F +++R+ KLT K++ +G A S IS++E + D M+ LA LDT + Sbjct: 35 RAAFGAMVQSLRRAQKLTLKQVSEASGLALSTISKIENSNLSPTYDVMLKLAAGLDTDIV 94 Query: 79 KLL 81 +L Sbjct: 95 SIL 97 >gi|260221082|emb|CBA29291.1| hypothetical protein Csp_A11410 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 97 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK KLTQ E + A++++S +E+GK+ ++ + ++ L PL KLL+ Sbjct: 13 RKIQKLTQIEFAEKCNIARNYLSTIESGKANPSLAVLFTISDQLGVPLCKLLQ 65 >gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] Length = 138 Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R +RK+ KLTQK++ ++ S ET K T ++D+++ LA + L L+ Sbjct: 6 LANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFYNVNLDSLV 65 >gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] Length = 108 Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R++R K+TQ+E+ RT + +IS++E I+++ + + L+ L P Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVTLSDFFLP 69 >gi|319892577|ref|YP_004149452.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius HKU10-03] gi|317162273|gb|ADV05816.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius HKU10-03] Length = 66 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R RK KLTQ E+ +R ++ ISE+E K ++I + +A L ++LLK Sbjct: 9 NIRAYRKMCKLTQSELASRLKTSRQHISEIECCKRGLSIKMLEKMAKKLQVEPYQLLK 66 >gi|301166804|emb|CBW26381.1| hypothetical protein BMS_1526 [Bacteriovorax marinus SJ] Length = 215 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K DE LS IL + RK++ LTQ E+ +TG Q +S++E+ + +++ Sbjct: 21 KVDEYGLSRIIL-----------SARKKSGLTQSEVSKKTGITQGTLSKIESYQCSVSAK 69 Query: 65 NMIILAHTLDTP 76 + +L+ LD P Sbjct: 70 HWFLLSKLLDIP 81 >gi|197120438|ref|YP_002132389.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196170287|gb|ACG71260.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 134 Score = 37.4 bits (85), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+E LTQK++ R G QS IS++E G +T + LA LD + + +P Sbjct: 48 RRELGLTQKQLAGRVGIHQSEISDIERGAATPGYRTLAKLAIGLDAEVKLVPRP 101 >gi|68499972|gb|AAY97915.1| TrbA [Plasmid pMCBF1] gi|133711724|gb|ABO36544.1| TrbA protein [uncultured bacterium pMCBF6] Length = 104 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +T++E+ R+G + S++S+L TGK ++ M +A LD PL LL+ Sbjct: 1 MTKQELSERSGVSISFLSDLTTGKGNPSLKVMEAVAKALDVPLPLLLE 48 >gi|149179178|ref|ZP_01857746.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] gi|148841996|gb|EDL56391.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] Length = 160 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RK AK++Q+ + +TG QS IS LE+GK + + + +A LD + KLL P Sbjct: 106 RKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSNATLKKIAAALDIEI-KLLDP 158 >gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus abyssi GE5] gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5] Length = 192 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 24/34 (70%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 + + IRKE +TQ+E+ + G Q++I++LE GK Sbjct: 12 DIKKIRKELGITQEELARKAGVTQAYIAKLEAGK 45 >gi|265764159|ref|ZP_06092727.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256767|gb|EEZ28113.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163497|emb|CBW23048.1| putative DNA binding protein [Bacteroides fragilis 638R] Length = 103 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R+ RK+ K+TQ+E+ + G A+S+I+ +E G++ I I + +A L Sbjct: 48 RDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARAL 94 >gi|255009477|ref|ZP_05281603.1| hypothetical protein Bfra3_10082 [Bacteroides fragilis 3_1_12] gi|313147247|ref|ZP_07809440.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136014|gb|EFR53374.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 103 Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R+ RK+ K+TQ+E+ + G A+S+I+ +E G++ I I + +A L Sbjct: 48 RDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARAL 94 >gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45] gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45] Length = 213 Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK ++T ++ +TG + +S++E G + +++ M LA+ L PL +L Sbjct: 34 RELRKRQRMTGGDLAGKTGLSVGMLSKIENGVISPSLNTMSALANALGVPLVQLFS 89 >gi|331092438|ref|ZP_08341263.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401281|gb|EGG80870.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] Length = 190 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +N+R E K T K + TG + ++S+LE G ++I ID++ ++ LD L Sbjct: 12 KNLRTEKKYTLKYLSENTGLSIGFLSQLERGMTSIAIDSLDKISKVLDVEL 62 >gi|328676885|gb|AEB27755.1| Predicted transcriptional regulator [Francisella cf. novicida Fx1] Length = 75 Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK+ LTQ ++ +G +I E+E GKST +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLAGISGLGIRFIGEVENGKSTAHIGKVIQLASSL 62 >gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM 5427] gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 176 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RK+ KLTQKE+ + G A+ I + E G+ N++ + LA TL ++LL Sbjct: 4 NNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYELL 61 >gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] Length = 191 Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 24/33 (72%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R IRKE +TQ+E+ + G Q++I++LE+G+ Sbjct: 12 IRKIRKELGITQEELARKAGVTQAYIAKLESGR 44 >gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 67 Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 MI + +RK +QKE+ TG +QS+ISELE G K+ +I + +A L+ + Sbjct: 1 MIPGKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKTNPSIKVIKRIAEVLEIDIC 60 Query: 79 KLL 81 +L+ Sbjct: 61 QLV 63 >gi|291519992|emb|CBK75213.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 157 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 6 RDEPHLSDAIL---------RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 D P LS +L R+R+I N + KE +TQK++ TG +S ISE + Sbjct: 33 EDCPELSSFMLKQLKVAARNRDRIIMNNQIFKVLKEKGITQKQLSKMTGIPESTISEWKN 92 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLK 82 ID +++++ L LLK Sbjct: 93 KGKVPGIDKILLISEALGVSPNTLLK 118 >gi|164687455|ref|ZP_02211483.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM 16795] gi|164603229|gb|EDQ96694.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM 16795] Length = 69 Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N + +RKE KL+Q E+ G +++ +S +ETG+ ++L LD Sbjct: 3 EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTVSSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 172 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 35/48 (72%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +++RKE KLT KE+ +T + S++S++E GKS++ ++++ +A L+ Sbjct: 11 KSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALN 58 >gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 148 Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ+++ R + +S ETG++T ID ++A LD P+ + Sbjct: 1 MALKDILPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|148547381|ref|YP_001267483.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148511439|gb|ABQ78299.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 272 Score = 37.0 bits (84), Expect = 0.78, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R PH+S + R +R++A L+Q E+ TG +Q +S +ETG++ + Sbjct: 8 RSTPAPHISAG---------QHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASP 58 Query: 64 DNMIILAHTLDTPL 77 + L LD PL Sbjct: 59 GTLHALLSALDAPL 72 >gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11] gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11] Length = 189 Score = 37.0 bits (84), Expect = 0.78, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT ++ R G + W+S++E KS +I ++ +A LD P+ L Sbjct: 14 DLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIAKCLDVPMSMLF 70 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 37.0 bits (84), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+E LTQ E+ + G + + I+ E GK I ID++ +A+ L PL L Sbjct: 13 REEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYFL 64 >gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa E681] Length = 115 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK L+Q+ + + GF S+I +E + I++ N+ +A L+ +++LL Sbjct: 12 IRDIRKSKGLSQEALAEKAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67 >gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 79 Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I + R EAKLTQ ++ +TG Q IS++E G +D + I+ L+ Sbjct: 10 ILGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAKLDTLFIILSALN 63 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 37.0 bits (84), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M N R IRK LTQ ++ R G A++ +++ E G S I + LA TL P+ Sbjct: 1 MALPENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPV 58 >gi|312961260|ref|ZP_07775765.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|311284918|gb|EFQ63494.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 262 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R IR++AKL+Q ++ TG +Q +S +ETG++ + L LD PL Sbjct: 11 LRQIRRQAKLSQLDLALITGVSQRHLSCIETGRAKAGAATLHTLLTALDAPL 62 >gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 141 Score = 37.0 bits (84), Expect = 0.82, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R LTQ I N TG + IS +ETG + + + +I LA+ LD + +LL Sbjct: 18 RARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANVLDVSVDELL 69 >gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 262 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK+A L+Q+++ G ++ +S+ E G+S ++D +++L+ L + Sbjct: 1 MEFSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|257437719|ref|ZP_05613474.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257200026|gb|EEU98310.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 95 Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L+ + V + RK + LTQKE+ RTG AQ+ IS+LE G + ++ + LA + Sbjct: 24 LQPELSLVQAMIDARKVSGLTQKELSERTGIAQADISKLENGNANPSLRTLQRLAAGM 81 >gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 184 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R A L+ E+ R G A+S +S+LE+G +++ + L L+ L Sbjct: 9 VIAGSLRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGNPSVETLWALCVALEIQFADL 68 Query: 81 LKP 83 + P Sbjct: 69 IDP 71 >gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 222 Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + LT E R G +++ +S++E +++ ++ + +LA D P+ L + Sbjct: 42 NVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTSLFR 99 >gi|326204396|ref|ZP_08194254.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985428|gb|EGD46266.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 86 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R IR E LTQ E+ R G + +I +E+G +T + + I+A +LD Sbjct: 3 NWLRKIRDELNLTQAEVAKRVGVTRQFIGMIESGAATPHPETAKIIATSLD 53 >gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 214 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 6 RDEPH-LSDAILRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + +PH L DA RE+ + V R++R ++T E+ +TG + +S++E G + Sbjct: 12 KQDPHALRDA--REKNLEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISP 69 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + LAH L PL +L Sbjct: 70 SLTTISALAHALKVPLVQLFS 90 >gi|303230899|ref|ZP_07317643.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] gi|302514412|gb|EFL56410.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] Length = 91 Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 5 KRDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 K +P ++ L+E+ + + R+ A LTQ+E+ R+G QS I+ +E G +T + Sbjct: 13 KLKDPQYKESYLKEKAMLASAVAITKAREAAGLTQRELAERSGVPQSTIARIERGYNT-S 71 Query: 63 IDNMIILAHTLD 74 ID + +A L+ Sbjct: 72 IDTLSKIAFALN 83 >gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 192 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 6/76 (7%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 ++P D ++R+R+ R +R + +E+ R +QS +S +E G+ + +D + Sbjct: 3 EDPGDLDGLVRKRI------RALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQL 56 Query: 67 IILAHTLDTPLWKLLK 82 + LA+ LDT L +L++ Sbjct: 57 VTLANALDTTLDQLVE 72 >gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 272 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +N RKEA LTQ+++ + + +S ETG+S +ID +LA L P Sbjct: 8 QNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVP 57 >gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 226 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 7/78 (8%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K+D+ L D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D Sbjct: 2 KQDDDDL-DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALD 54 Query: 65 NMIILAHTLDTPLWKLLK 82 +++ LA LDT L +L++ Sbjct: 55 SLVTLARALDTSLDQLVE 72 >gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 39/66 (59%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +++ F + +RKE +TQ+E+ ++ G ++ I+ ETG++ + + + ++A+ L T Sbjct: 1 MTDKIKFKERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILST 60 Query: 76 PLWKLL 81 LL Sbjct: 61 TTDYLL 66 >gi|150018283|ref|YP_001310537.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904748|gb|ABR35581.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 68 Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E ++ NN + +R E KL+Q ++ G +++ IS +ETG+ ++L LD Sbjct: 2 EELVLHNNLKEVRTEQKLSQSQLAEMVGVSRNTISSIETGEFNPTAKLALVLCVALDKKF 61 Query: 78 WKLL 81 +L Sbjct: 62 EELF 65 >gi|154508670|ref|ZP_02044312.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC 17982] gi|153798304|gb|EDN80724.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC 17982] Length = 156 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R R++A LTQ E+ TG +QS ++++E+GK ++ Sbjct: 14 RAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVS 49 >gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 207 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +R TQ ++ TGF + ++S++E K I ++ +A LDT L LL+P Sbjct: 26 LRTSRGFTQDKLALETGFTKGYLSKIENSKVIPPIGTLVKIAQVLDTDLSALLEP 80 >gi|83309581|ref|YP_419845.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944422|dbj|BAE49286.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 76 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N R +R + L+Q E+ ++S++++LETGK ++ + LA L+ Sbjct: 8 RELFATNLRRLRHDKGLSQDELACDAEMSRSYLAQLETGKYHASLKIIGRLADVLEVDPV 67 Query: 79 KLLK 82 + LK Sbjct: 68 EFLK 71 >gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 181 Score = 37.0 bits (84), Expect = 0.87, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT K++ N S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] Length = 502 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ R E LT +++ R G A S IS E+G +I + LA LDT +LL P Sbjct: 41 RHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSAAELLDP 97 >gi|268317796|ref|YP_003291515.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM 4252] gi|262335330|gb|ACY49127.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM 4252] Length = 505 Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + +R++ LT +++ +R G + S++SE+E GK D +I LA Sbjct: 9 RFVLGLKLKALRQQRGLTLQDVASRAGLSVSYLSEIEKGKKFPKPDKLIDLASVFSVSYE 68 Query: 79 KLLKP 83 +L+ P Sbjct: 69 ELISP 73 >gi|126649566|ref|ZP_01721807.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] gi|126593891|gb|EAZ87814.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] Length = 129 Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76 R IR L+Q+E+ RTG F++ +S +E G+S I + + IL LD P Sbjct: 12 LRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLEILMKALDIP 65 >gi|148557504|ref|YP_001265086.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502694|gb|ABQ70948.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 252 Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + L+ +E+ RTG S +S+LE GK + D +++LA L + KL Sbjct: 43 LRAARLDKGLSLRELAARTGLPFSTLSKLENGKMGMTYDRLVLLAQALGVEIGKLF 98 >gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] Length = 293 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ R LTQKE+ R + IS+ E G +I+ ++ LA L TP+ +LLK Sbjct: 9 LKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLK 65 >gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 186 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+++ L+ E+ + G A+S +S+LE+G +I+ + L LD P +L++ Sbjct: 19 RQKSGLSLSELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFARLIE 71 >gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 115 Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK L+Q+ + + GF S+I +E + I++ N+ +A L+ +++LL Sbjct: 12 IRDIRKSKGLSQEALAEQAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67 >gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 148 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +RK LTQ+E+ + + IS E+G T ++D + LA LD + Sbjct: 1 MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] Length = 125 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ TQ + ++ G + +S LE+GK I+I+ +++ LD P+ ++L Sbjct: 19 QRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPIEEIL 76 >gi|84501835|ref|ZP_00999993.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597] gi|84389830|gb|EAQ02464.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597] Length = 85 Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RK A LTQ E+ R QS+++ LE+G+ +++ +I+LA L Sbjct: 21 RKAAGLTQAELALRLRCHQSFVARLESGERRVDVVELIVLARAL 64 >gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605] gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605] Length = 230 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLWKL 80 R R+ LTQ + R G ++ IS+ E+G +T N N+I LA L+ +P W L Sbjct: 6 IREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWLL 61 >gi|225375217|ref|ZP_03752438.1| hypothetical protein ROSEINA2194_00842 [Roseburia inulinivorans DSM 16841] gi|225212884|gb|EEG95238.1| hypothetical protein ROSEINA2194_00842 [Roseburia inulinivorans DSM 16841] Length = 69 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 N + RK+A LTQ+E R+G ++ ELE GK T+ +D Sbjct: 9 NYIKEERKKAGLTQEEFAMRSGLGLRFVRELEQGKETVRMD 49 >gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] Length = 236 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F +KE L+Q+ + + G QS +++L G + IN++N + LA L+ + Sbjct: 21 FEAKKKELGLSQESLGDAIGMGQSAVAQLLNGVNAINVENAVKLAEALEVSV 72 >gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 176 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 5 EKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 58 >gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7] gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7] Length = 287 Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RKE L+Q+ + N G ++ +S+ E +++ + DN+I+LA L LLK Sbjct: 19 NRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSLDDLLK 77 >gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88] gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88] Length = 219 Score = 37.0 bits (84), Expect = 0.92, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 N + R EA ++QK++ + G ++++I+E+ETGK IN +N+I Sbjct: 7 NIKTYRLEANMSQKQLGKKIGVSENFINEIETGKRIIN-ENLI 48 >gi|26989372|ref|NP_744797.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984232|gb|AAN68261.1|AE016460_7 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313499269|gb|ADR60635.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 272 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R PH+S + R +R++A L+Q E+ TG +Q +S +ETG++ + Sbjct: 8 RSTPAPHISAG---------QHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASP 58 Query: 64 DNMIILAHTLDTPL 77 + L LD PL Sbjct: 59 GTLHALLSALDAPL 72 >gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F ++IR+ +TQ+++ + +G + +I E+E G+ ++ ++ LA LD P+ +L Sbjct: 7 LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAEL 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|293189013|ref|ZP_06607745.1| putative toxin-antitoxin system, toxin component [Actinomyces odontolyticus F0309] gi|292822044|gb|EFF80971.1| putative toxin-antitoxin system, toxin component [Actinomyces odontolyticus F0309] Length = 156 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R R++A LTQ E+ TG +QS ++++E+GK ++ Sbjct: 14 RAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVS 49 >gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1] gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1] Length = 148 Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +RK LTQ+E+ + + IS E+G T ++D + LA LD + Sbjct: 1 MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 137 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R + ++Q +I RTG + ++S +E G + +++ + +A LD PL + Sbjct: 26 TIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALDLPLSQFF 82 >gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176] gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176] Length = 209 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 28/55 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +F + + RK K +Q EI G Q + + ETG+ST + + LA LDT Sbjct: 1 MFADRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDT 55 >gi|261342972|ref|ZP_05970830.1| hypothetical protein ENTCAN_09574 [Enterobacter cancerogenus ATCC 35316] gi|288314723|gb|EFC53661.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 182 Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 39 EIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 EI R G A+S +S+LE+G +++ + L LD P +LL+P Sbjct: 25 EIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69 >gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 127 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR + KLTQ+E+ R ++Q +++ E G S +I N++ + L+ + LL Sbjct: 5 NLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLL 61 >gi|297196740|ref|ZP_06914138.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720104|gb|EDY64012.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 104 Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E T E+ +R+G A+ + +LE G++T ++ LAHT D P+ + L Sbjct: 37 LRAERGWTFDELADRSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIERFL 89 >gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 122 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I NN + +RK+ +L Q E+ + +Q + ETG++ D + ILA D Sbjct: 6 RKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFFDVSTD 65 Query: 79 KLL 81 LL Sbjct: 66 YLL 68 >gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/81 (22%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVN-NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 ++ +P S+++ + I V N R++R+++ L+ +++ ++G +++ + ++ETGKS Sbjct: 6 KQVHADPQHSESVATKLSIIVGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAP 65 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 I+ + +A L + L+ Sbjct: 66 TINLLGRIAEALQVSVPSLIS 86 >gi|160944249|ref|ZP_02091478.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium prausnitzii M21/2] gi|313113217|ref|ZP_07798837.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] gi|158444431|gb|EDP21435.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium prausnitzii M21/2] gi|295103725|emb|CBL01269.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii SL3/3] gi|310624459|gb|EFQ07794.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] Length = 93 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 30/46 (65%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + RKE+ LTQK++ RTG AQ+ IS+LE G + ++ + LA + Sbjct: 36 DARKESGLTQKQLSERTGIAQADISKLERGNANPSLRTLQRLAAGM 81 >gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris] gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +RKEAKLTQ ++ ++ G Q+ E + ++ + LA D P+ + Sbjct: 1 MNFGQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|186684878|ref|YP_001868074.1| helix-turn-helix domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467330|gb|ACC83131.1| helix-turn-helix domain protein [Nostoc punctiforme PCC 73102] Length = 82 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Query: 24 NNFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N FR + RK AKLTQ E+ + QS++S+ E G+ +++ + +A L+ Sbjct: 11 NRFRQLLIEARKAAKLTQAELSAKLKLPQSYVSKYERGERRLDVIKFLQVAQVLE 65 >gi|310827713|ref|YP_003960070.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308739447|gb|ADO37107.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 68 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E +I N + IRKE KL+Q + G +++ IS +ETG+ +IL LD Sbjct: 1 MNEELILKNRLKEIRKEKKLSQSALAELVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 70 Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F N+ + +RK KLTQ+E+ + G + I +E GK + +++ +A TL+ L Sbjct: 7 FSNHIQELRKAKKLTQQELADAIGMTRQTIVAIEKGKYSPSLEAAFRIAQTLEQSL 62 >gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 M ++N R++R++ +Q++I + Q S+ E GK+ I +D+MI+LA Sbjct: 1 MDYLNRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLA 51 >gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 14/59 (23%), Positives = 35/59 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E+ L+Q+ + + G + ++S++E G+++ ++ ++ LA L +LL+ Sbjct: 6 ETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLLQ 64 >gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 453 Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R A +Q+++ G++ S IS LETGKS++++D + +A+ L P Sbjct: 16 RLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIP 65 >gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 100 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNM 66 + RKE LTQ+E+ + G +Q +SELE G+ +T+ +D + Sbjct: 32 DLAQARKERDLTQREVAAKMGVSQCRVSELEAGRLATMRVDTL 74 >gi|254374210|ref|ZP_04989692.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151571930|gb|EDN37584.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 75 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + RK+ LTQ ++ +G +I E+E GKST +I +I LA +L Sbjct: 15 IKKARKKQGLTQADLTGISGLGTRFIGEVENGKSTAHIGKVIQLASSL 62 >gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum] gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum] Length = 81 Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK ++Q+E+ + +G ++++S +E G+ I++ N++ LA L L+ Sbjct: 13 GRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLV 70 >gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1] gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila RKU-1] Length = 188 Score = 37.0 bits (84), Expect = 1.00, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Query: 23 VNNF-------RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 V NF R +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T Sbjct: 9 VGNFVRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGT 68 Query: 76 PL 77 L Sbjct: 69 DL 70 >gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 186 Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R L+ E+ R ++ +SE+E+G+ NI+ + L LD PL +L Sbjct: 8 DRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPLTGMLG 66 >gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 40/63 (63%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF N ++RKEA ++Q+E+ ++ + IS+ E G+ T ++ + ++A +TP+ Sbjct: 2 KIIFSKNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVE 61 Query: 79 KLL 81 +LL Sbjct: 62 ELL 64 >gi|148257956|ref|YP_001242541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410129|gb|ABQ38635.1| Putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 58 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +TQ+++ +GF+Q +IS LE G+ + + L+ LD +LLKP Sbjct: 1 MTQEQLAEISGFSQQYISGLEKGQRNPTVVTIYELSVALDVDYLELLKP 49 >gi|134302287|ref|YP_001122256.1| transcriptional regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|134050064|gb|ABO47135.1| helix-turn-helix DNA binding protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 71 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ LTQ ++ +G +I E+E GK+T +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSLG 63 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 35/55 (63%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+E +TQK++ + + S I+ LE+G++ +++ +I +A L+T + LL Sbjct: 18 RKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAEVLNTSISFLL 72 >gi|298491474|ref|YP_003721651.1| XRE family transcriptional regulator ['Nostoc azollae' 0708] gi|298233392|gb|ADI64528.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708] Length = 529 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 6/63 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D +L E++I RK L+Q+E+ TG +QSWI ++E+G+ +++ I+L Sbjct: 471 TDDLLAEQVI------QARKSIDLSQRELAKLTGKSQSWIRDVESGRLKPKLEDQILLRK 524 Query: 72 TLD 74 L+ Sbjct: 525 VLN 527 >gi|149202477|ref|ZP_01879449.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143759|gb|EDM31793.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 215 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%) Query: 2 PRRKRDEPH--LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 P + RDE L AI RE R RK+ +T E+ N T + +S++E G + Sbjct: 16 PHKLRDEREKVLEVAIGRE-------VRAYRKKQNITVAELSNMTELSIGMLSKIENGNT 68 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + ++ + LAH L PL K Sbjct: 69 SPSLTTLQTLAHALSVPLTAFFK 91 >gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 212 Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R++ E +L AI R+ R++RK ++T E+ +TG + +S++E G + ++ Sbjct: 17 REQREKNLEVAIGRQ-------VRDLRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSL 69 Query: 64 DNMIILAHTLDTPLWKLLK 82 + + LA+ L PL +L Sbjct: 70 NTLQALANALRVPLVQLFS 88 >gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088] gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088] Length = 68 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +NN R R+E LTQ+++ G ++ I+ +ETGK ++ L+ P+ L K Sbjct: 2 INNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALFK 61 Query: 83 P 83 P Sbjct: 62 P 62 >gi|308066906|ref|YP_003868511.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305856185|gb|ADM67973.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 66 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M R RK TQ+E+ RTG + + + +E G T++ D + ++A TL+ + Sbjct: 2 ENMQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNLIAQTLEIEV 61 Query: 78 WKL 80 +L Sbjct: 62 REL 64 >gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 280 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RK+ L+Q+E+ + G ++ +S+ E +++ + DN+I+LA L +LLK Sbjct: 7 NRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLDELLK 65 >gi|295839211|ref|ZP_06826144.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197695663|gb|EDY42596.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 77 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L +R + R R EA +TQ+ + RTG + + +E G + +D+++++A L Sbjct: 10 VLDQRRAIGDRIRTARLEAAITQETLAERTGLDRKTVVRVEGGTHSTLLDHLLLIARALG 69 Query: 75 TPLWKLLK 82 L L++ Sbjct: 70 RLLADLVR 77 >gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 174 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 IR++ KL+Q++ G + +S E G S NI+ +I+++ D P+ ++LK Sbjct: 50 IRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFDIPVDEMLKS 104 >gi|308229519|gb|ADO24172.1| C.AciIP [Arthrobacter citreus] Length = 75 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 37/63 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + R + +Q+++ + + +++IS +E + I ++N +A+ L+ PL+KL Sbjct: 6 LFAKNIKIYRTKNGYSQEKLADLSQLHRTYISSVERSQRNITLENAEKIANALNIPLYKL 65 Query: 81 LKP 83 L P Sbjct: 66 LLP 68 >gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] Length = 152 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 20 MIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 MI + + +R E LTQ+E+ +R + +S ETG + ID + ++A LD P+ Sbjct: 1 MILLKDVLVQLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVM 60 Query: 79 KLL 81 +LL Sbjct: 61 RLL 63 >gi|168830123|gb|ACA34351.1| transcription regulator [Paenibacillus polymyxa] Length = 63 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R RK TQ+E+ RTG + + + +E G T++ D + I+A TL+ + + Sbjct: 1 MQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNIIAQTLEIEVRE 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1] gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1] Length = 247 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 I N+ + IRK K+TQKE+ TGF Q+ IS E G Sbjct: 3 ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENG 39 >gi|300725156|ref|YP_003714484.1| putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297631701|emb|CBJ92414.1| Putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 182 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ E+ R G A+S +S+LE G +++ + L L+ P +LL+P Sbjct: 16 RARTGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARLLEP 69 >gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R+E+ LTQ+++ TG +S+++++E G ID M +A L L +L + Sbjct: 14 RALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLGQLFEG 70 >gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 I N+ + IRK K+TQKE+ TGF Q+ IS E G Sbjct: 3 ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENG 39 >gi|108805047|ref|YP_644984.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766290|gb|ABG05172.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 86 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 L+Q+ ++ G AQS ISELE+GK + + + ILA L +L+K Sbjct: 21 LSQQGLKRIAGVAQSTISELESGKRSAKLRTVRILAEALGVEPKELMK 68 >gi|24376233|ref|NP_720341.1| type II restriction-modification system activator, putative [Shewanella oneidensis MR-1] gi|24344698|gb|AAN52941.1| type II restriction-modification system activator [Shewanella oneidensis MR-1] Length = 75 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R R + ++Q+++ GF +++I +E G+ + + +LA TL+ + +LL Sbjct: 12 LANNVRTFRLKNGISQEQLAEICGFHRTYIGSIERGERNTTLSTLEVLAKTLNVSIAQLL 71 >gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 186 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R+ ++ E+ R G A+S +S+LE G +++ + L LD P +L++P Sbjct: 16 LRQERQRVGISLTELARRAGIAKSTLSQLEAGLGNPSMETLWALCVALDIPFSRLVEP 73 >gi|323481312|gb|ADX80751.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 306 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 6/64 (9%) Query: 20 MIFVNNFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTI--NIDNMIILAHTL 73 IF NN NI RKE KLTQK++ TG +QS + + E G I N+D + A + Sbjct: 3 FIFENNSGNILKSLRKEQKLTQKKLSELTGISQSALVKYENGTRGISKNVDIALSKALNV 62 Query: 74 DTPL 77 D+ L Sbjct: 63 DSLL 66 >gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 281 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + RK+ KLTQKE+ + A + IS E G++ +DN+ + P KLL Sbjct: 40 DNIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIEQMTSIFGIPKSKLL 97 >gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 73 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L ++ F + +R TQ+E+ TG ++I +E G+ + +DN++ +A L Sbjct: 3 LTDKQRFGRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGERNLGLDNLLKIARALGE 62 Query: 76 PLWKLL 81 P LL Sbjct: 63 PPAALL 68 >gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 118 Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN R + ++Q +I RTG + ++S +E G + ++D + +A +D L Sbjct: 8 RNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVALATFF 62 >gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae ATCC 10712] Length = 189 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 R EP +AI R+I R+ RK+ ++ + R+G +Q ++S+LE G +T ++ Sbjct: 2 SRPEP-TPEAIEVGRVI-----RSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLS 55 Query: 65 NMIILAHTLDTPLWKLLKP 83 ++ +A LD L+P Sbjct: 56 SIYRIAEALDVTPGTFLRP 74 >gi|315499167|ref|YP_004087971.1| transcriptional regulator, y4mf family [Asticcacaulis excentricus CB 48] gi|315417179|gb|ADU13820.1| transcriptional regulator, y4mF family [Asticcacaulis excentricus CB 48] Length = 208 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ RK LTQ++ + TG + +ISELE+GK T+ ++ + + L ++ Sbjct: 153 RDRRKSMGLTQQQFADITGVGRRFISELESGKPTLEFGRVLKVCQNVGIELMAAMR 208 >gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074] gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074] gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074] Length = 200 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D ++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 9 DGLVRKRI------RALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARA 62 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 63 LDTTLDQLVE 72 >gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 71 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RK+A+++Q+E+ R G ++++ +E G+ ++ N+ +A L+ P+ L Sbjct: 10 FGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIAKALEVPISDLF 69 >gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 73 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R + R RKEA +Q+++ + + ++S +E GK + +DN++ +A L T Sbjct: 6 KHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLVKIAKALGTH 65 Query: 77 LWKLL 81 + L+ Sbjct: 66 VRDLV 70 >gi|225019346|ref|ZP_03708538.1| hypothetical protein CLOSTMETH_03299 [Clostridium methylpentosum DSM 5476] gi|224947977|gb|EEG29186.1| hypothetical protein CLOSTMETH_03299 [Clostridium methylpentosum DSM 5476] Length = 112 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ER VN + +RKE+ TQ+ I + G AQ IS E K I +D +I A T Sbjct: 2 ERGGIVNRLKELRKESSYTQEAIAAKLGTAQENISNYEIEKVPIPVDLLIQFAQLYHT 59 >gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 141 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +RKE ++Q+++ ++ IS+ E+GK+ +IDN+I+L L + Sbjct: 1 MGFDNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550] Length = 181 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|213028985|ref|ZP_03343432.1| hypothetical protein Salmonelentericaenterica_45075 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 89 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++ L+ EI R G A+S +S+LE G +++ + L LD P +LL Sbjct: 38 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLL 89 >gi|188587728|ref|YP_001920281.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188498009|gb|ACD51145.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 121 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%) Query: 20 MIFVNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M ++ NF +N R E KLT K++ + +G S IS++ETGK+ Sbjct: 1 MSYIGNFLKNKRIEKKLTLKDLSDLSGVGPSTISDIETGKA 41 >gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 209 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D+++ LA Sbjct: 9 DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARA 62 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 63 LDTSLDQLVE 72 >gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum] gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum] Length = 81 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK ++Q+E+ + +G ++++S +E G+ I++ N++ LA L L+ Sbjct: 13 GRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLV 70 >gi|329943947|ref|ZP_08292216.1| restriction-modification system control element Bcll [Actinomyces sp. oral taxon 170 str. F0386] gi|328531380|gb|EGF58222.1| restriction-modification system control element Bcll [Actinomyces sp. oral taxon 170 str. F0386] Length = 61 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R++ L+Q+++ RT S+I ++E G+ +++ N++ +AH LDT L+ Sbjct: 1 MRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHALDTDAGGLVSG 58 >gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 152 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + +RK+ K+TQ+E+ G + + E G+S I + N LA PL LL Sbjct: 1 MNRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLL 59 >gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264] gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264] Length = 181 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ RK LTQ ++ R G +QS + +E G+ ++ID + + H L + + +P Sbjct: 23 RDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQDDIVSIGRP 79 >gi|325662590|ref|ZP_08151190.1| hypothetical protein HMPREF0490_01930 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471087|gb|EGC74313.1| hypothetical protein HMPREF0490_01930 [Lachnospiraceae bacterium 4_1_37FAA] Length = 70 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M + RN+R++ L+QK + + G AQ+ S+ E K + ID +I L D Sbjct: 1 MNYAERMRNLRQDNDLSQKNVADMLGVAQTTYSQYELEKRPMPIDYLIALCKFYDV 56 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 164 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F N + +R+ + + +KE+ + G + E G+ + N+I L+ D P+ Sbjct: 10 MVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPVDV 69 Query: 80 LLKP 83 L P Sbjct: 70 LCSP 73 >gi|224368109|ref|YP_002602272.1| HTH-type transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223690825|gb|ACN14108.1| HTH-type transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 211 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R++ L+ KE+ N TGF + ++E GK + ++ L+ LD+ L +L+ Sbjct: 37 IKNLREKKGLSIKEVANLTGFDSQRLEDIENGKIQPQLGTVMKLSRALDSALGRLV 92 >gi|167563774|ref|ZP_02356690.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] Length = 81 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +F +RK +Q+++ +G A+S++ +E G+ I + N+ +LA TL+ Sbjct: 6 RELFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLEV 62 >gi|295676649|ref|YP_003605173.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295436492|gb|ADG15662.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 291 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R++R ++Q ++ GF+Q IS +E+G+S D ++ LA TLD PL Sbjct: 22 WRDVRG---VSQLDLSLEAGFSQRQISFIESGRSVPGRDTLLTLAQTLDVPL 70 >gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] Length = 61 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N +RK+ +TQ+E+ + G ++++S LE GK ++D + ++ L + + K+ K Sbjct: 1 MNQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 >gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus ATCC 19977] gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium abscessus] Length = 173 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E LT +E+ +RTG +S++S++E ST ++ + +A LD + +L Sbjct: 6 RALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLF 60 >gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8] gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 176 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 5 EKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 58 >gi|258406621|ref|YP_003199362.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798848|gb|ACV69784.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + LTQ E+ +TG AQS +S +E GK I D LA L+ Sbjct: 62 LRAARNRSGLTQVELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLN 110 >gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG] Length = 243 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D+++ LA Sbjct: 9 DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARA 62 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 63 LDTSLDQLVE 72 >gi|294617175|ref|ZP_06696830.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] gi|291596575|gb|EFF27813.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] Length = 221 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ KLTQKE+ + G + IS E ++ +++ + +L HTL P+ Sbjct: 8 RTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPI 58 >gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 184 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 32/54 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R++A L+ E+ R G A+S +S+LE+G +++ + L+ L +L++P Sbjct: 18 RRKAGLSLAELARRAGIAKSTLSQLESGSGNPSVETIWALSTALGVSFSQLVQP 71 >gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] Length = 141 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +RKE ++Q+++ ++ IS+ E+GK+ +IDN+I+L L + Sbjct: 1 MGFNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|56708158|ref|YP_170054.1| transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|89256451|ref|YP_513813.1| transcriptional regulator [Francisella tularensis subsp. holarctica LVS] gi|110670629|ref|YP_667186.1| transcriptional regulator [Francisella tularensis subsp. tularensis FSC198] gi|115314886|ref|YP_763609.1| transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|156502554|ref|YP_001428619.1| helix-turn-helix domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010327|ref|ZP_02275258.1| hypothetical protein Ftulh_06310 [Francisella tularensis subsp. holarctica FSC200] gi|187931886|ref|YP_001891871.1| transcriptional regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|224457260|ref|ZP_03665733.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254367787|ref|ZP_04983808.1| transcriptional regulator [Francisella tularensis subsp. holarctica 257] gi|254370643|ref|ZP_04986648.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874966|ref|ZP_05247676.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|290953909|ref|ZP_06558530.1| transcriptional regulator [Francisella tularensis subsp. holarctica URFT1] gi|295312709|ref|ZP_06803452.1| transcriptional regulator [Francisella tularensis subsp. holarctica URFT1] gi|56604650|emb|CAG45708.1| transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|89144282|emb|CAJ79565.1| transcriptional regulator [Francisella tularensis subsp. holarctica LVS] gi|110320962|emb|CAL09091.1| transcriptional regulator [Francisella tularensis subsp. tularensis FSC198] gi|115129785|gb|ABI82972.1| possible transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|134253598|gb|EBA52692.1| transcriptional regulator [Francisella tularensis subsp. holarctica 257] gi|151568886|gb|EDN34540.1| hypothetical protein FTBG_00435 [Francisella tularensis subsp. tularensis FSC033] gi|156253157|gb|ABU61663.1| helix-turn-helix domain protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|187712795|gb|ACD31092.1| transcriptional regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|254840965|gb|EET19401.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159373|gb|ADA78764.1| hypothetical protein NE061598_06205 [Francisella tularensis subsp. tularensis NE061598] Length = 75 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R RK+ LTQ ++ +G +I E+E GK+T +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSL 62 >gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 241 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D+++ LA Sbjct: 9 DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARA 62 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 63 LDTSLDQLVE 72 >gi|222053496|ref|YP_002535858.1| plasmid maintenance system antidote protein, XRE family [Geobacter sp. FRC-32] gi|221562785|gb|ACM18757.1| plasmid maintenance system antidote protein, XRE family [Geobacter sp. FRC-32] Length = 116 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQK + TG Q ISE+E GK +I + LA L+ +LL Sbjct: 61 LRAYRNREGLTQKRLAEMTGIPQHHISEMENGKRSIGKERAKRLAEALNCDYRRLL 116 >gi|293567401|ref|ZP_06678750.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] gi|291589918|gb|EFF21717.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] Length = 221 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ KLTQKE+ + G + IS E ++ +++ + +L HTL P+ Sbjct: 8 RTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPI 58 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E LTQK++ G A S I + E+G I+ + +A LD P+ +LL Sbjct: 9 IRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64 >gi|288962833|ref|YP_003453127.1| transcriptional regulator [Azospirillum sp. B510] gi|288915099|dbj|BAI76583.1| transcriptional regulator [Azospirillum sp. B510] Length = 226 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R+ LT K++ RTG A S +S++E G+ ++ D ++ L L + +L +P Sbjct: 26 LKAARRARGLTLKQVAERTGMALSTLSKVENGQMSLTYDKLLQLTAGLKIEIAELFEP 83 >gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 205 Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK KLT + + +G A S IS++E G + +D ++ LA LD + +L+ Sbjct: 11 LRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQLI 66 >gi|297342817|gb|ADI33756.1| control protein [Shigella boydii] Length = 75 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +TQK + G QS+IS+ ETG+ I+ +I + + L P + L+ Sbjct: 18 RKRIGVTQKMLSEALGKPQSYISKYETGERRIDAIELIDICNELGVPFYNLI 69 >gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R QS +S +E G+ + +D ++ LA Sbjct: 12 DSLVRKRI------RALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLVTLARA 65 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 66 LDTSLDQLVE 75 >gi|169344358|ref|ZP_02865331.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297483|gb|EDS79590.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 105 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Query: 25 NFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK + K+TQ+++ TG ++S++S++E + ++D I LA LD + L+ Sbjct: 6 NLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTVNDLV 64 >gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676] Length = 181 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|84514580|ref|ZP_01001944.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84511631|gb|EAQ08084.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 189 Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +RK LT + R G + W+S++E S+ ++D++ LA LD LL Sbjct: 16 DLRALRKARGLTLTALAERVGRSVGWLSQVERDLSSASVDDIAALARVLDVATSSLLA 73 >gi|282599735|ref|ZP_05971683.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568432|gb|EFB73967.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 201 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+++ L+ E+ + G A+S +S+LE+G +I+ + L LD P +L++ Sbjct: 34 RQKSGLSISELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFSRLIE 86 >gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134] gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134] gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|69246897|ref|ZP_00604172.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879186|ref|ZP_05658839.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881995|ref|ZP_05661648.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890016|ref|ZP_05669669.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615585|ref|ZP_05713355.1| transcriptional regulator, xre family protein [Enterococcus faecium DO] gi|260560167|ref|ZP_05832344.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293559524|ref|ZP_06676061.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|294621805|ref|ZP_06700963.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|314947447|ref|ZP_07850866.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195026|gb|EAN09490.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813414|gb|EEV42172.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817653|gb|EEV44981.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826376|gb|EEV53002.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073734|gb|EEW62059.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598588|gb|EFF29647.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|291606586|gb|EFF35983.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|313646105|gb|EFS10685.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 221 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ KLTQKE+ + G + IS E ++ +++ + +L HTL P+ Sbjct: 8 RTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPI 58 >gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] Length = 124 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 5 KRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +++ P D ++++ I N R +RK LTQ+ + G S IS +E G+ ++ Sbjct: 6 EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 65 Query: 64 DNMIILAHTLDT 75 +MI L L+ Sbjct: 66 PDMIKLCRALEA 77 >gi|317055421|ref|YP_004103888.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447690|gb|ADU21254.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 74 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +NI + +++ R GF I + G + IDN+IILA DTP+ K++ Sbjct: 11 NNIKNIIRSKGFKISDVQARCGFNTPQAIFKWMRGDAVPTIDNLIILADMFDTPIDKII 69 >gi|260885325|ref|ZP_05734776.2| toxin-antitoxin system, antitoxin component, Xre family [Prevotella tannerae ATCC 51259] gi|260852826|gb|EEX72695.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella tannerae ATCC 51259] Length = 81 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/28 (57%), Positives = 21/28 (75%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57 RKEAKLTQ E+ R G +S+IS++E G Sbjct: 26 RKEAKLTQSELAKRVGTTKSYISKIENG 53 >gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842] gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842] gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 111 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F + +RK+A LTQ E+ ++ G QS ++ E GK +N++ +A L+ + Sbjct: 1 MEFSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSV 58 >gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus JCSC1435] gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 33/52 (63%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N RN+R++ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T Sbjct: 5 NKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGT 56 >gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241] gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 139 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N + RK A LTQKE+ + G A+ I + E+ K + ++ +A L+ L+ Sbjct: 1 MSVGDNIKKARKNAGLTQKELAEKCGAAEITIRQYESSKREPRNEQLMKIARLLNVELYD 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20] Length = 293 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R LTQKE+ R + IS+ E G +I+ ++ LA L TP+ +LLK Sbjct: 9 LKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLK 65 >gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30] gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10] Length = 293 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R LTQKE+ R + IS+ E G +I+ ++ LA L TP+ +LLK Sbjct: 9 LKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLK 65 >gi|325983748|ref|YP_004296149.1| helix-turn-helix domain-containing protein [Nitrosomonas sp. AL212] gi|325533267|gb|ADZ27987.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212] Length = 120 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +I N I +E K+T+ E+ + G + S+I+EL K+ ++ + +A LDTPL Sbjct: 4 LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPL 61 >gi|167757680|ref|ZP_02429807.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] gi|167664700|gb|EDS08830.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] Length = 76 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 MI+ + R +R+++ L+QK I + G Q+ S+ E GK ++ ++ +I L Sbjct: 9 MIYRDRLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQ 60 >gi|258543862|ref|ZP_05704096.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC 15826] gi|258520902|gb|EEV89761.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC 15826] Length = 85 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E +++I R+ F N R +R+ ++Q+E+ G ++ ++S++E G + ID M Sbjct: 3 EAQSTESIPEIRLRFAQNLRTLRRLKNISQEELAFSAGISRVYLSDVERGNRAVTIDVMG 62 Query: 68 ILA 70 LA Sbjct: 63 KLA 65 >gi|325980837|ref|YP_004293240.1| helix-turn-helix domain-containing protein [Nitrosomonas sp. AL212] gi|325533342|gb|ADZ28061.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212] Length = 120 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +I N I +E K+T+ E+ + G + S+I+EL K+ ++ + +A LDTPL Sbjct: 4 LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPL 61 >gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L] gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|146313711|ref|YP_001178785.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320587|gb|ABP62734.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 182 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+ EI R G A+S +S+LE+G +++ + L L P +LL+P Sbjct: 16 RTRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALGIPFARLLEP 69 >gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE LT + + G AQ +S E G + IN+ +++ +A LDT + Sbjct: 21 RKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTSI 68 >gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W] gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W] gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187] gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1] gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187] gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1] gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|147678779|ref|YP_001212994.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146274876|dbj|BAF60625.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 97 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 29/49 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RKE +TQK++ ++ G Q +S +E+ + N N++ +A LD+ + Sbjct: 45 RKEKGMTQKDVADKAGLTQQMVSRIESREHLPNYRNLVKIADALDSKIQ 93 >gi|269837331|ref|YP_003319559.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269786594|gb|ACZ38737.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 146 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 F + R+EA+ +Q + GF S++S LE+G T + ++ LA L Sbjct: 12 FAELLKRFREEARTSQSRLAESAGFDHSYVSRLESGNRTPTREAVVKLADAL 63 >gi|218247603|ref|YP_002372974.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168081|gb|ACK66818.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 173 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 R+ + +RK+ LTQK++ + G QSW+S+LE+ Sbjct: 35 RISLTQAMKQLRKKVGLTQKQLAEKLGVTQSWVSKLESA 73 >gi|319783030|ref|YP_004142506.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168918|gb|ADV12456.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R +RK LT EI + G + W+S++E G ST ++ ++ A P+ Sbjct: 8 VLAGDIRALRKARGLTLAEIGLKLGRSVGWVSQVERGLSTPSLGDLRAFAELFGVPI 64 >gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|225017295|ref|ZP_03706487.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] gi|224949912|gb|EEG31121.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRT-----GFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R+IRK+ KLTQ ++ G +S +++E G I +I +A LD PL + Sbjct: 14 NIRSIRKQKKLTQMDVVRELELAGLGTTRSSYAKIEAGIQHIYASELIAIAEILDVPLTE 73 Query: 80 LLK 82 L + Sbjct: 74 LFR 76 >gi|317494137|ref|ZP_07952553.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917910|gb|EFV39253.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 265 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R + +TQ+E+ G +Q I +ETGK + + + LD PL Sbjct: 4 NNIKQLRTQLSITQRELAYMVGTSQQQIQRIETGKVAAKLGLAQTICNALDKPL 57 >gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI] gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10] Length = 224 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 29/59 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M ++ + RK AKLTQ ++ R G Q+ IS LE GKS + A + LW Sbjct: 1 MELKDSIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGTAYIAQLAAACGVSALW 59 >gi|83589153|ref|YP_429162.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572067|gb|ABC18619.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 74 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR L+Q ++ ++G AQS+I ++E+G + + + LA L+ P Sbjct: 10 LKQIRASKNLSQYQLSKKSGVAQSYIHDIESGAKSPTLRTLEKLAAALEVP 60 >gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|241518608|ref|YP_002979236.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863021|gb|ACS60685.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 72 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R +R+ KL+Q+E+ +R +++IS LE + +I+ + LA L Sbjct: 4 RETFARNLRTLRQARKLSQEELAHRASVDRTYISSLERCVYSPSIEVLDRLAAVLGVEPA 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820] gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820] gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 70 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+E +T +E+ + G +QS+I +E G + +I +A L+ L L++ Sbjct: 11 LKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDLAALVE 67 >gi|254003130|ref|YP_003052596.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|253987213|gb|ACT52069.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] Length = 77 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F R IR ++ TQ+ + +G +S+IS +E G+S+ +D ++ L LD L L Sbjct: 8 FGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALDISLSYL 66 >gi|167750339|ref|ZP_02422466.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702] gi|167656699|gb|EDS00829.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702] Length = 93 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RK +TQK + +TG AQ IS+LE G S ++ + LA +D L Sbjct: 37 DARKSKGITQKTLSEKTGIAQGDISKLENGNSNPSLRTLCRLAAGMDMKL 86 >gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187] gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187] Length = 73 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N +RK+ +TQ+E+ + G ++++S LE GK ++D + ++ L + + K+ K Sbjct: 1 MNQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 >gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 181 Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 181 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|312888681|ref|ZP_07748249.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298848|gb|EFQ75949.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 81 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +SD + ++F + +++RKE KLT +++ R I ++E+GK I + +I LA Sbjct: 2 ISDLDKKVLILFGKHHKSLRKERKLTYRQMAQRCNIDYGDIQKIESGKINITMLTLIELA 61 Query: 71 HTLDTPLWKLL 81 L+ P LL Sbjct: 62 KGLNLPPKDLL 72 >gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +R+ LTQ + G A IS +E+ + + ++D MI +A L PL L Sbjct: 5 LFGARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLPLEAL 64 Query: 81 L 81 L Sbjct: 65 L 65 >gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] Length = 184 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 35/53 (66%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + L++ Sbjct: 11 RNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLIE 63 >gi|141422|sp|P14307|YSMA_SERMA RecName: Full=Uncharacterized HTH-type transcriptional regulator in smaI restriction system 5'region gi|581714|emb|CAA34477.1| unnamed protein product [Serratia marcescens] Length = 84 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R+ R L+Q+++ +G +++I +E + + + +IILA L+T + KL Sbjct: 14 ILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILAKALNTSVPKL 73 Query: 81 L 81 L Sbjct: 74 L 74 >gi|238760729|ref|ZP_04621847.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC 35236] gi|238701055|gb|EEP93654.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC 35236] gi|318604154|emb|CBY25652.1| hypotethical transcriptional regulator [Yersinia enterocolitica subsp. palearctica Y11] gi|318605347|emb|CBY26845.1| hypothetical protein Y11_25291 [Yersinia enterocolitica subsp. palearctica Y11] Length = 105 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 33/55 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR + Q E+ ++ ++S++SELE+GK T++ D + ++ D P+ L+ Sbjct: 7 KTIRLFHNIKQSELADKLCISKSYLSELESGKKTVSFDILEKYSNNFDIPVSSLV 61 >gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 116 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + ++Q +I RTG + ++S +E G + +++ + +A LD PL + Sbjct: 5 GTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQFF 62 >gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 184 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 35/53 (66%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + L++ Sbjct: 11 RNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLIE 63 >gi|154252608|ref|YP_001413432.1| helix-turn-helix domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156558|gb|ABS63775.1| helix-turn-helix domain protein [Parvibaculum lavamentivorans DS-1] Length = 126 Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 7/62 (11%) Query: 23 VNNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +FRN+ R L+Q+E+ + G + ++SELE GK+T+ I ++ + L Sbjct: 60 IQSFRNLGDLVRTARITKDLSQQELADMAGVGRRFVSELENGKATLEIGRVLKVCQALGV 119 Query: 76 PL 77 L Sbjct: 120 DL 121 >gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 F ++R E LTQ+E+ G A S IS+ E+GKS + ++ LA L Sbjct: 5 FAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADAL 56 >gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] Length = 291 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%) Query: 9 PHLSDAILRERMIFVNNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PH+SD + + + +NI RK LT + G +Q IS E GK+ I Sbjct: 88 PHVSDGFIMDTLTTGAVTKNIGLRIQIWRKTMMLTAAALGLSVGLSQQQISRNEHGKNRI 147 Query: 62 NIDNMIILAHTLDTPL 77 +ID+++ +A L P+ Sbjct: 148 HIDHLVNIALALGIPI 163 >gi|313906268|ref|ZP_07839612.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468888|gb|EFR64246.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 96 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 4 RKRDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +K ++P + A ++ M + + R +TQKE+ RTG AQ+ IS+LE G Sbjct: 9 KKMNDPEFAKAYEEIQPEMNVIRAIIDARISQNMTQKELAERTGIAQTEISKLENGTRNP 68 Query: 62 NIDNMIILAHTLDTPL 77 +I + LA +D L Sbjct: 69 SIKLLQRLAEGMDMVL 84 >gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 5 KRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +++ P D ++++ I N R +RK LTQ+ + G S IS +E G+ ++ Sbjct: 23 EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 82 Query: 64 DNMIILAHTLDT 75 +MI L L+ Sbjct: 83 PDMIKLCRALEA 94 >gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335] gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335] Length = 533 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ KL+Q+ + R G +QSW+ ++E G+ ++ D+ +L LD Sbjct: 488 RQRQKLSQRSLAERLGKSQSWVRDIENGRFKVSRDDQALLRKELD 532 >gi|200387340|ref|ZP_03213952.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604438|gb|EDZ02983.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 265 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R + +TQ+E+ G +Q I +ETGK + + + LD PL Sbjct: 4 NNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57 >gi|126700770|ref|YP_001089667.1| putative phage transcriptional regulator [Clostridium difficile 630] gi|115252207|emb|CAJ70046.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 66 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKLL 81 N + R + L Q+E+ +R G ++ ++S LETGK+ + D MI L+ LDT + +L Sbjct: 4 NLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61 >gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] Length = 219 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 17 RERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +ER++ V R++R+ ++T ++ TG + +S++E G ++ ++ ++ LA L Sbjct: 24 KERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSASLTTLVTLARAL 83 Query: 74 DTPLWKLLK 82 P+ K Sbjct: 84 SVPITDFFK 92 >gi|188583054|ref|YP_001926499.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346552|gb|ACB81964.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 79 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R IR E L+Q + + +++IS +E G ++ID + LA L W Sbjct: 10 REILATNLRRIRAEKGLSQDALADLCEIDRTYISGVERGLRNVSIDTLERLATGLRLEPW 69 Query: 79 KLLK 82 L++ Sbjct: 70 LLIR 73 >gi|113461078|ref|YP_719146.1| hypothetical protein HS_0935 [Haemophilus somnus 129PT] gi|112823121|gb|ABI25210.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 143 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ K+TQ+ + R +++ ++ E G+S I I+ ++ +A L+ PL L+ Sbjct: 10 NIRTFRENKKMTQEMMAERLNVSKTCYAKWERGESQIRIERLVQIAQILEVPLEDLM 66 >gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 85 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R R +TQ E+ +++G + + I LE+GK T+++ + + LD LL Sbjct: 16 NEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFAICKVLDVDPGVLLDA 75 >gi|254497228|ref|ZP_05110037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353552|gb|EET12278.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 84 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +Q+EI + +G ++++ +E G+ I+I N+I +A L+ + L+ Sbjct: 15 IRTLRTSEGYSQEEIADASGMGRTYMGRVERGEQNISIQNLIQIAFALNVEVGVLV 70 >gi|254976734|ref|ZP_05273206.1| putative phage transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094118|ref|ZP_05323596.1| putative phage transcriptional regulator [Clostridium difficile CIP 107932] gi|255315869|ref|ZP_05357452.1| putative phage transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518530|ref|ZP_05386206.1| putative phage transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651649|ref|ZP_05398551.1| putative phage transcriptional regulator [Clostridium difficile QCD-37x79] gi|260684686|ref|YP_003215971.1| putative phage transcriptional regulator [Clostridium difficile CD196] gi|260688344|ref|YP_003219478.1| putative phage transcriptional regulator [Clostridium difficile R20291] gi|306521450|ref|ZP_07407797.1| putative phage transcriptional regulator [Clostridium difficile QCD-32g58] gi|260210849|emb|CBA65944.1| putative phage transcriptional regulator [Clostridium difficile CD196] gi|260214361|emb|CBE06742.1| putative phage transcriptional regulator [Clostridium difficile R20291] Length = 66 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKLL 81 N + R + L Q+E+ +R G ++ ++S LETGK+ + D MI L+ LDT + +L Sbjct: 4 NLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61 >gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273] gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 370 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 28/59 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R +R + +QKE+ G + I LE KS + ++ +A LD PL +P Sbjct: 9 NVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSEPRMSSLQAIARALDVPLQDFFRP 67 >gi|333024924|ref|ZP_08452988.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332744776|gb|EGJ75217.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 266 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ + +Q+E+ +R+G + +S +ETGK+ + ++ L+ LD PL Sbjct: 5 LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 56 >gi|319647195|ref|ZP_08001417.1| ImmF control region protein [Bacillus sp. BT1B_CT2] gi|317390542|gb|EFV71347.1| ImmF control region protein [Bacillus sp. BT1B_CT2] Length = 79 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R + +N R + KLTQ E+ +TG ++S+IS++E G+ + LA +D L Sbjct: 3 DRKLLGALIKNQRCKKKLTQLELAEQTGLSRSYISDIENGRYIPGASTLTSLAICIDLDL 62 >gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] Length = 155 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ + R+E LTQ+E+ R + +S ETG + ID + ++A LD P+ + Sbjct: 2 ILLKDALAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTR 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 186 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R L+ E+ R +QS +S +E G+ + +D ++ LA LDT L +L++ Sbjct: 16 LRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDELVE 72 >gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 116 Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 32/57 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I RN RK A +Q+ + + G +++ ++E G+S ++ ++ +A+ L+ PL Sbjct: 9 IIGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPL 65 >gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 183 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 MIF N + RK+ LTQ ++ N+ + IS ETGK+ +I+N+I+++ L+ L Sbjct: 1 MIFHNLIKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSL 58 >gi|291561683|emb|CBL40482.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 68 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + +I NN + +R E KL+Q + G +++ IS +ETG+ +IL LD Sbjct: 1 MNDELILKNNLKQVRTEKKLSQSALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|318056750|ref|ZP_07975473.1| transcriptional regulator, XRE family protein [Streptomyces sp. SA3_actG] gi|318079624|ref|ZP_07986956.1| transcriptional regulator, XRE family protein [Streptomyces sp. SA3_actF] Length = 266 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ + +Q+E+ +R+G + +S +ETGK+ + ++ L+ LD PL Sbjct: 5 LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 56 >gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 354 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + RK+ KLTQ ++ R ++S IS E G +I +I LA+ ++ + L Sbjct: 5 VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64 Query: 81 L 81 Sbjct: 65 F 65 >gi|34500490|ref|NP_904261.1| hypothetical protein pUO1_12 [Delftia acidovorans] gi|319765115|ref|YP_004129051.1| hypothetical protein Alide_4472 [Alicycliphilus denitrificans BC] gi|34013311|dbj|BAC81984.1| TrbA [Delftia acidovorans] gi|317119802|gb|ADV02289.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 120 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ NR+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSNRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 200 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 12 DSLVRKRI------RALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARA 65 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 66 LDTTLDQLVE 75 >gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] Length = 217 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK---STINIDNMIILAHTLDTPLWKLL 81 + +RK+ +TQ E+ R+G +++IS+LE+GK +T+ I LA LD LL Sbjct: 11 LKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQK--LARGLDISTSALL 67 >gi|186685279|ref|YP_001868475.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467731|gb|ACC83532.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 237 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 1 MPRRKRDEPH--LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 + ++ DEP L+ + R+ + R IR +A LTQ ++ + G Q+ +S+LE+ Sbjct: 10 LQQKVSDEPEVILAGKLEYLRLYLTDAMREIRNKAGLTQAQLAQKLGVKQAAVSKLESAL 69 Query: 59 STINIDNMIILAHTLDTPL 77 +++++ H L L Sbjct: 70 KEHELESVLHYLHALGANL 88 >gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24] gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24] Length = 200 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 12 DSLVRKRI------RALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARA 65 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 66 LDTTLDQLVE 75 >gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+ R RK+ K++Q E+ R G A+ I+ +E K +++ + LAH L T L L Sbjct: 1 MNHVREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLF 59 >gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 181 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] Length = 110 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +N R +RK +Q+E+ + ++ E+E G ++D+++ +A+ L P+ Sbjct: 8 RQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIA 67 Query: 79 KLL 81 +L Sbjct: 68 ELF 70 >gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] Length = 110 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R IRK L+Q+ + R G + + +S +ETG + +++ ++ LA LD Sbjct: 10 IRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALD 58 >gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1] gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1] Length = 180 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI R +R E +LTQ+E+ +RT + +IS++E ++ +I ++ + L T L + Sbjct: 1 MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|213691431|ref|YP_002322017.1| helix-turn-helix domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522892|gb|ACJ51639.1| helix-turn-helix domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457502|dbj|BAJ68123.1| hypothetical protein BLIJ_0529 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 401 Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ +TQKE+ R+G +Q+ +S+L+ G + N + + L+ LD P+ Sbjct: 26 RRLEGVTQKELSTRSGLSQAKLSKLQNGIISFNESDAVKLSGALDYPI 73 >gi|227495327|ref|ZP_03925643.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226831197|gb|EEH63580.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 68 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 NN +RKE L+Q+E+ G +++ IS +ETG+ ++L LD Sbjct: 9 NNLPQVRKEKGLSQQELAKLVGVSRNTISSIETGQYCPTAKLALVLCVALD 59 >gi|289671819|ref|ZP_06492709.1| peptidase [Pseudomonas syringae pv. syringae FF5] Length = 220 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M F + + R+ AKL Q E+ R G Q+ IS+LE GKS Sbjct: 1 MEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKS 40 >gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 340 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + RK+ KLTQ ++ R ++S IS E G +I +I LA+ ++ + L Sbjct: 5 VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64 Query: 81 L 81 Sbjct: 65 F 65 >gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] Length = 310 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++M F N +N+RK L+Q+++ + ++ +S+ E G S +D ++IL + Sbjct: 2 DKMNFNTNLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNM 61 Query: 78 WKLLK 82 +L+K Sbjct: 62 DELVK 66 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E LTQK++ G A S I + E+G I+ + +A LD P+ +LL Sbjct: 9 IRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64 >gi|255655401|ref|ZP_05400810.1| MerR family transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451389|ref|ZP_06893127.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880261|ref|ZP_06904226.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259805|gb|EFH06662.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428704|gb|EFH14586.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 188 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RNIRK K T ++ T + S+IS++E ++ ++ +A LDTPL+ + Sbjct: 7 RNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMFM 61 >gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 183 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 35/58 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 MIF N + R++ LTQ E+ N+ + IS ETGK+ +I+N+I+++ L+ L Sbjct: 1 MIFHNLIKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISL 58 >gi|15896492|ref|NP_349841.1| LacI/xre family transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15026320|gb|AAK81181.1|AE007820_7 Predicted transcriptional regulator, lacI/xre family [Clostridium acetobutylicum ATCC 824] Length = 243 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 6/57 (10%) Query: 9 PHLSDAILRERMIFVN----NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 HLS ++ ++F+N + IR++AKL+QK+ + G A+ +I+E+E G+ + Sbjct: 10 CHLSK--IKGMVLFMNRAGEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVV 64 >gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24] Length = 197 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 9 DSLVRKRI------RALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARA 62 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 63 LDTTLDQLVE 72 >gi|126700569|ref|YP_001089466.1| putative phage repressor [Clostridium difficile 630] gi|209901281|ref|YP_002290920.1| putative phage repressor [Clostridium phage phiCD27] gi|115252006|emb|CAJ69842.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|199612162|gb|ACH91335.1| putative phage repressor [Clostridium phage phiCD27] Length = 151 Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLD 74 N +N R E ++ +++ N+TG ++S + ETG I +D + ILAH LD Sbjct: 12 ITNRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALD 65 >gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 181 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|210622345|ref|ZP_03293114.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM 13275] gi|210154333|gb|EEA85339.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM 13275] Length = 68 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ +I NN + R E KL+Q + G +++ IS +ETG+ +IL LD Sbjct: 1 MKDELILKNNLKQARAEKKLSQAALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|302521428|ref|ZP_07273770.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302430323|gb|EFL02139.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 275 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ + +Q+E+ +R+G + +S +ETGK+ + ++ L+ LD PL Sbjct: 14 LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 65 >gi|194289198|ref|YP_002005105.1| XRE family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223033|emb|CAQ69038.1| putative transcriptional regulator, xenobiotic response element (XRE) family [Cupriavidus taiwanensis LMG 19424] Length = 149 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 33/53 (62%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ +Q+ + +G ++S++S +E+GK + + N+ LA TL P ++L Sbjct: 16 LRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTAEML 68 >gi|254974937|ref|ZP_05271409.1| MerR family transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092326|ref|ZP_05321804.1| MerR family transcriptional regulator [Clostridium difficile CIP 107932] gi|255100407|ref|ZP_05329384.1| MerR family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306352|ref|ZP_05350523.1| MerR family transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314064|ref|ZP_05355647.1| MerR family transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516744|ref|ZP_05384420.1| MerR family transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649843|ref|ZP_05396745.1| MerR family transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683001|ref|YP_003214286.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686599|ref|YP_003217732.1| hypothetical protein CDR20291_1234 [Clostridium difficile R20291] gi|306519941|ref|ZP_07406288.1| hypothetical protein CdifQ_07697 [Clostridium difficile QCD-32g58] gi|260209164|emb|CBA62385.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212615|emb|CBE03634.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 188 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RNIRK K T ++ T + S+IS++E ++ ++ +A LDTPL+ + Sbjct: 7 RNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMFM 61 >gi|86738850|ref|YP_479250.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86565712|gb|ABD09521.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 111 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 28/52 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 F R+ A LTQ+++ R+G ++ I+ +E G+ + ++ LAH + Sbjct: 10 FGERLAQTRRHASLTQRDVAERSGISRPTIANIEKGRQRLLYHQLLDLAHAI 61 >gi|282892584|ref|ZP_06300857.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497708|gb|EFB40077.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 84 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 32/54 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R R+ ++Q+E+ R+G ++++ +E G+ ++I+N+ ILA L+ Sbjct: 17 FGELVRQKRQALGISQEELAFRSGLHRTYVGSVERGERNLSIENVFILAKALEC 70 >gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] Length = 76 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT +E+ G +Q IS E+G + INID + L+ P+ L Sbjct: 22 RKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPIQVFL 73 >gi|70729495|ref|YP_259233.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68343794|gb|AAY91400.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 242 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 24/40 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M F + + R+ A+L Q E+ R G Q+ IS+LE GKS Sbjct: 1 MEFKDRLKTARRHAQLNQTELAERAGLTQTSISDLERGKS 40 >gi|170740636|ref|YP_001769291.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium sp. 4-46] gi|168194910|gb|ACA16857.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium sp. 4-46] Length = 328 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R +++K + + +G ++ +I++LETG ++I + +AH + PL L+ P Sbjct: 50 RTARAVRAMSRKALSHSSGLSERYIAQLETGHGNVSIILLRRVAHAIGVPLEDLIAP 106 >gi|229137167|ref|ZP_04265786.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228646339|gb|EEL02554.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 70 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK K+TQ+E+ GF+ S IS +E G+ +N D + LA L + ++ Sbjct: 3 IRHIRKAKKITQEELAKNLGFSGSSAISYIENGQRKLNADKIPKLAECLGVTIEEIF 59 >gi|160940818|ref|ZP_02088160.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC BAA-613] gi|158436338|gb|EDP14105.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC BAA-613] Length = 70 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + + R+E K+T +E+ ++G ++S IS +E G+ + M +L+ L P KL Sbjct: 6 IFHIKEFREEKKITLRELSEKSGISKSEISFIENGQRDPTLHTMCLLSLALGVPPAKLF 64 >gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] Length = 181 Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 153 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 5 KRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +++ P D ++++ I N R +RK LTQ+ + G S IS +E G+ ++ Sbjct: 35 EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 94 Query: 64 DNMIILAHTLDT 75 +MI L L+ Sbjct: 95 PDMIKLCRALEA 106 >gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] Length = 183 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%) Query: 13 DAILRERMIFVN-NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 DA+L+ +V N R R + +L+Q+E+ R G ++ I+ LETG I++ + +A+ Sbjct: 5 DAVLQ----YVGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIAN 60 Query: 72 TLDTPLWKLL 81 LD +L+ Sbjct: 61 ALDVNFKQLV 70 >gi|103487689|ref|YP_617250.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977766|gb|ABF53917.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 73 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F N+ R +R A ++TQ E+ R G + I+ +E GK + +++ +AH PL + Sbjct: 6 FANDIRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGKPLEAV 65 Query: 81 LK 82 + Sbjct: 66 FQ 67 >gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301] Length = 223 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 IRK+ +TQ+++ R G ++ +S +ETGK+ ++ N IL L+ P W Sbjct: 8 IRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDW 58 >gi|21221318|ref|NP_627097.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|7635975|emb|CAB88810.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 281 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 S +I + R R IRK+A LT +E+ +R G+ +S S +E G++ + D++ Sbjct: 4 SSSIQQARETLGKRLREIRKDAGLTARELASRAGWHESKCSRIENGRTPPSDDDL 58 >gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 106 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK +LTQ E+ R G ++ +S E G S +++ ++ + LDT LL Sbjct: 6 FGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYLL 65 >gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 236 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK KLT +E+ + ++S +S+ E G+ I+IDN+ ++A LD + KLL Sbjct: 17 RKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68 >gi|120435300|ref|YP_860986.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577450|emb|CAL65919.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 99 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 25/38 (65%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + RK A+LTQ+++ RTG +S+IS +E G S I I Sbjct: 42 LKEARKSAQLTQEQLAERTGTKKSYISRIERGLSDIQI 79 >gi|296133125|ref|YP_003640372.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296031703|gb|ADG82471.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 89 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R E L+QK++ ++ G QS IS LE+G+ +++ + +AH L L Sbjct: 36 LRLEQGLSQKDLADKVGTKQSAISRLESGEYNPSVEFLTKIAHALGKEL 84 >gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 121 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 18 ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ IF+ R+ RKE +LTQ+E+ +++G A I ++E G+ + + +L L Sbjct: 4 DKFIFLGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKNPTYETLCLLVDRL 60 >gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] Length = 184 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] Length = 236 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK KLT +E+ + ++S +S+ E G+ I+IDN+ ++A LD + KLL Sbjct: 17 RKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68 >gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 184 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 184 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 35/53 (66%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + L++ Sbjct: 11 RNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLIE 63 >gi|117924636|ref|YP_865253.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117925852|ref|YP_866469.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117926017|ref|YP_866634.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117608392|gb|ABK43847.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] gi|117609608|gb|ABK45063.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] gi|117609773|gb|ABK45228.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 104 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 6 RDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 R +P S+A L + + F + RKEA LTQ+EI R G +S +S LE+ Sbjct: 20 RLKPGFSEAYDALEDEFQALRTFLSARKEAGLTQEEIAKRMGTTKSAVSRLES 72 >gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 322 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + N+RK+ +Q+E R G ++ IS+ E G+ST +++ ++ ++ Sbjct: 1 MILADKITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDV 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] Length = 184 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + +RK++ ++Q+E+ + G ++ +S+ E +ST +++ ++ ++ D Sbjct: 1 MIFADKLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|260591432|ref|ZP_05856890.1| conserved domain protein [Prevotella veroralis F0319] gi|260536624|gb|EEX19241.1| conserved domain protein [Prevotella veroralis F0319] Length = 78 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID--NMIILAHTLD 74 + +RKE LTQ+++ + G +I E+E GK+T+ +D N ++L L Sbjct: 10 LKQLRKEYHLTQEDMAFKAGVGLRFIREMEQGKATLRMDKVNQVLLLFNLQ 60 >gi|256396427|ref|YP_003117991.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362653|gb|ACU76150.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 77 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R +R EA LTQ ++ G QS++S+ E+G +++ + +A L T + Sbjct: 9 EHLRLCAVLRELRHEADLTQVQVAAALGVPQSFVSKYESGDRRLDLIELHHVAKALGTTV 68 Query: 78 WKLLK 82 +L+ Sbjct: 69 QTILE 73 >gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 112 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRKE ++ E+ + +Q +S E G + I+ID + L+ LD P +++K Sbjct: 27 RKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDCPFERVIK 82 >gi|257439609|ref|ZP_05615364.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197976|gb|EEU96260.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 212 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RKE+ LTQ+++ RTG AQ+ IS+LE G ++ + LA + Sbjct: 157 RKESGLTQQQLSERTGIAQTDISKLERGNGNPSLRTLQRLAAGM 200 >gi|210634337|ref|ZP_03298073.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM 13279] gi|210158864|gb|EEA89835.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM 13279] Length = 68 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E + N+ R RKE L+Q ++ TG +++ IS +ETG+ ++L LD Sbjct: 1 MKESLTLKNSLRAARKERGLSQAQLAEMTGVSRNTISSIETGQFNPTAKLALVLCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] Length = 119 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR +RK+ LT K++ + +Q IS E G IN+D + ++ H L L Sbjct: 21 FR-LRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELGCSL 71 >gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 105 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IRK+ K+TQ E+ TGF Q+ IS E GK +++ ++ A L+ Sbjct: 10 KEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVS 59 >gi|331650420|ref|ZP_08351492.1| Helix-turn-helix-containing protein [Escherichia coli M605] gi|331040814|gb|EGI12972.1| Helix-turn-helix-containing protein [Escherichia coli M605] Length = 265 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R + +TQ+E+ G +Q I +ETGK + + + LD PL Sbjct: 4 NNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLGLAQAICNALDKPL 57 >gi|260557994|ref|ZP_05830206.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260408504|gb|EEX01810.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 250 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R +A L QKE+ +TG QS IS+ E + D + +A L++ Sbjct: 18 DRLRFLRTQAGLNQKELSKKTGVGQSSISDFENNVKIMAADKLAAIAKALNS 69 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R AK++Q E+ G Q+ +S +E G++ + I N+I L L+ P+ Sbjct: 21 RISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKLHQILECPI 68 >gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] Length = 179 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 32/49 (65%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N+R+ LTQ+E+ RT ++ +IS++E+ K++ N++ + + L T Sbjct: 8 KNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGT 56 >gi|225569760|ref|ZP_03778785.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] gi|225161230|gb|EEG73849.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] Length = 160 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 36/57 (63%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R++ + TQ+ + + ++ IS+ ETGK ++DN+++L++ D L +L+ Sbjct: 10 NLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDVSLDELM 66 >gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus] Length = 191 Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R+E L+ ++ R+G ++ +S++E G ++ + +L L P +L Sbjct: 7 LVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQVPPQRL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|256545000|ref|ZP_05472368.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256399296|gb|EEU12905.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 68 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 36/66 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + ++++F N+ + +RKE +Q+++ + G +++ IS +ETG+ +IL L+ Sbjct: 1 MDDKLVFKNHLKEVRKEKGYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEK 60 Query: 76 PLWKLL 81 L Sbjct: 61 KFEDLF 66 >gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 179 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 32/49 (65%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N+R+ LTQ+E+ RT ++ +IS++E+ K++ N++ + + L T Sbjct: 8 KNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGT 56 >gi|114800368|ref|YP_759512.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740542|gb|ABI78667.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 72 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF N R +R++ ++Q+E+ + ++++S LE + ++D + +A LD Sbjct: 4 RDIFAQNIRRVRRQRGVSQEELASLANIDRTYVSALERSVYSASLDVVASIAKALDVEPH 63 Query: 79 KLL 81 +LL Sbjct: 64 ELL 66 >gi|115361280|ref|YP_778417.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286608|gb|ABI92083.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 94 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 EP D I + R R + T+ E+ N TG + +IS++E GK T I + Sbjct: 2 SEPQSVDTI----GALAHLIRATRLQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKV 57 Query: 67 IILAHTLDTPLW 78 ++L L L+ Sbjct: 58 MLLLGELGVRLY 69 >gi|296394527|ref|YP_003659411.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181674|gb|ADG98580.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 112 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNI-----RKEAKLTQKEIRNRTGFAQSWISELET 56 PR + P L A+ E N R+ + Q E G +S +S++E Sbjct: 6 PREEGAAPDLGYAVPMEHAALFNKHVGAEIALWRRVLDMGQDEFAAMVGIERSRLSKIEN 65 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83 GK +D + +A +DT + LL+P Sbjct: 66 GKLAARMDEFLAVAALVDTNVVDLLQP 92 >gi|312194132|ref|YP_004014193.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311225468|gb|ADP78323.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 419 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N R++R+ A L+Q+E+ RTG + S + ++E G S ++ + +LA L Sbjct: 11 NLRDLRRTAGLSQEELAGRTGLSVSTVRKVEQGGSA-RVETLHVLARAL 58 >gi|241554132|ref|YP_002979345.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863438|gb|ACS61100.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S A+ E I + +R+ R +++L ++ TG +Q IS +E+G+ST N++ LA Sbjct: 8 SSAVPNELGIQLRAWRDTRGKSQL---DLSLDTGISQRQISFIESGRSTPGRHNLLHLAD 64 Query: 72 TLDTPL 77 LD PL Sbjct: 65 ALDVPL 70 >gi|33601698|ref|NP_889258.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|33576135|emb|CAE33214.1| Putative transcriptional regulator [Bordetella bronchiseptica RB50] Length = 123 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 FR +RK+A+ TQ+E+ TG Q IS E G ++ Sbjct: 42 FRTLRKQARKTQRELAAATGMRQEAISRFEAGSAS 76 >gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 116 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F +N+RK+A LTQ ++ + G +Q + E G DN++ +A L+ + Sbjct: 1 MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSI 58 >gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] Length = 295 Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F ++IRK+ ++Q+ + + G ++ +++ ETG +I+NMI +++ + + + Sbjct: 1 MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 116 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F +N+RK+A LTQ ++ + G +Q + E G DN++ +A L+ + Sbjct: 1 MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSI 58 >gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 197 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T ++ TG ++S +S LE+G+ ++ ++ LA T D PL L+ Sbjct: 12 LRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDVPLDDLV 67 >gi|291327181|ref|ZP_06127260.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311305|gb|EFE51758.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 118 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ L+ E+ + G +Q IS E S ++ ++I L H LD PL L Sbjct: 39 IRRNKGLSGSELGKKIGVSQQQISRYERNVSRLDFGSLIYLLHHLDMPLSDFL 91 >gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 209 Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 31/65 (47%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R R +R+E LT E+ R A S +S++E G+ + D ++ LA L Sbjct: 15 RSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAEGLGAD 74 Query: 77 LWKLL 81 + +L Sbjct: 75 VAELF 79 >gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45] gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45] Length = 212 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 16 LRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 LRE+ + V R +RK ++T E+ +TG + +S++E G + +++ + LA+ Sbjct: 19 LREKNLEVAIGRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANA 78 Query: 73 LDTPLWKLLK 82 L PL +L Sbjct: 79 LRVPLVQLFS 88 >gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + IR ++ LTQ E+ ++ G + E+G+S +D M LA DT + Sbjct: 3 MEFSTRLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVAD 62 Query: 80 LL 81 L+ Sbjct: 63 LM 64 >gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 101 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++RK LTQ ++ G Q IS++E+GK+ ++ + M H + L Sbjct: 35 HELASLRKAQGLTQSQVAEAMGVTQGRISQIESGKTRLDTETMAAYLHAIGGEL 88 >gi|291460636|ref|ZP_06600026.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291416827|gb|EFE90546.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 107 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ + +TQKE+ RTG AQ+ IS+LE G + +I + LA + L Sbjct: 43 DARQRSGMTQKELAERTGIAQADISKLEHGNANPSIRTLQRLAKGMGMVL 92 >gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 120 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK +TQKE+ R G +S+IS LE G++ + + + I +A L L Sbjct: 62 LRDRRKALGITQKELAERIGRDRSYISRLEKGETDLQLSSFIRIATALGIML 113 >gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 147 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 IRKE LTQ+++ + + +S E G++T ID ++A T D P+ LL+ Sbjct: 10 IRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVALLLE 63 >gi|153008007|ref|YP_001369222.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559895|gb|ABS13393.1| putative transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 87 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IR+E +L+Q+E+ R +++IS LE GK I + +LA L LL+ Sbjct: 23 NVQRIRRERRLSQEELSFRAAKTRAYISGLEAGKRNPTILTLAMLADALAVEPNDLLR 80 >gi|42522817|ref|NP_968197.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100] gi|39574013|emb|CAE79190.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100] Length = 103 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 35/76 (46%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K D D I+ E + F + IR ++TQ E+ + G + +S+LE G Sbjct: 1 MSTKKSDAIKFLDKIIGEPVSFGATLQAIRLSDEMTQAEMAKKLGITNAHLSQLERGHKF 60 Query: 61 INIDNMIILAHTLDTP 76 ++ + + A L P Sbjct: 61 VSPERALSFAKKLGYP 76 >gi|303326046|ref|ZP_07356489.1| putative helix-turn-helix protein [Desulfovibrio sp. 3_1_syn3] gi|302863962|gb|EFL86893.1| putative helix-turn-helix protein [Desulfovibrio sp. 3_1_syn3] Length = 114 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E +++ + R G SW+ E G+S + ++ +I +A L P +++ Sbjct: 17 LREERLMSRYALAKRAGVDCSWLRRFEQGRSGVRVETLIAIAQGLQMPAARIV 69 >gi|168207478|ref|ZP_02633483.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170661169|gb|EDT13852.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 93 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%) Query: 25 NFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + IRK + K+TQ+++ TG ++S++S++E K ++D I L++ L L +L Sbjct: 6 NLQRIRKAKDPKITQQDLAKATGLSRSYLSDIEHNKYNPSLDTTIALSNALGVTLNEL 63 >gi|33597328|ref|NP_884971.1| putative transcriptional regulator [Bordetella parapertussis 12822] gi|33573755|emb|CAE38057.1| Putative transcriptional regulator [Bordetella parapertussis] Length = 123 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 22/35 (62%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 FR +RK+A+ TQ+E+ TG Q IS E G ++ Sbjct: 42 FRTLRKQARKTQRELAAATGMRQEAISRFEAGSAS 76 >gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 175 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +N + IRKE K+TQ E+ + +QS++S+LE + + I + +A L+ + L Sbjct: 5 DNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAYL 61 >gi|296110945|ref|YP_003621326.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] gi|295832476|gb|ADG40357.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] Length = 91 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + R + ++Q + + +Q +S ETGK +IDN+I L++ L T + +L+ P Sbjct: 28 NLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNLIKLSNILQTSVPELIAP 86 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P ++ ILR + R+ RK LTQ ++ + G +QS ++ +E G +++D + Sbjct: 3 ETPARTEDILRRIGTLI---RDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDML 59 Query: 67 IILAHTLDTPLWKLLKP 83 ++ LD+ L KP Sbjct: 60 NRVSEALDSEFVTLGKP 76 >gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 115 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N RK LTQ+++ +RTG ++ I E + +++++ +LA +T + +LL Sbjct: 8 NIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSIDRLL 64 >gi|182682772|ref|YP_001830970.1| conjugal transfer protein TrbA [Xylella fastidiosa M23] gi|182632882|gb|ACB93657.1| transcriptional regulator, XRE family [Xylella fastidiosa M23] Length = 118 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +IF N + E +T+ E+ + G + S++S+L GK+ ++ M +A L PL Sbjct: 4 IIFFTNILRLLDERGMTKYELSEKAGISISFLSDLTNGKANPSLKIMEAIAEALKVPLTI 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLE 66 >gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] Length = 141 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +RK L+Q+E+ + G ++ +S+ ETG+S +I+ +LA + Sbjct: 1 MSFADNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDD 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/61 (24%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F ++IR+ +TQ+++ + +G + +I E+E G+ ++ ++ L+ LD P+ +L Sbjct: 7 LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAEL 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] Length = 200 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 24/35 (68%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +NIRK +TQ ++ +TGF+Q+ IS E G+ +I Sbjct: 14 KNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSI 48 >gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 68 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 23/41 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MI R +RK L+Q+E G +QS+ISELE G T Sbjct: 1 MIPGRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKT 41 >gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena XCL-2] Length = 198 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 14/55 (25%), Positives = 34/55 (61%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RK+ LT +I ++G ++ +S++E G+ + ++D+++ ++ TL P+ + Sbjct: 19 NARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKISRTLGVPISSFFR 73 >gi|119382887|ref|YP_913943.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119386082|ref|YP_917137.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372654|gb|ABL68247.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] gi|119376677|gb|ABL71441.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 78 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 LRER+ N R +R+E L+Q+E+ +R ++++ LE ++ +D + LA L+ Sbjct: 10 LRERV--ARNLRRLRQEKSLSQEELADRADINRNYVGMLEREENAATVDMLEKLAAVLEV 67 Query: 76 PLWKLLK 82 +LL+ Sbjct: 68 DPVELLR 74 >gi|330980471|gb|EGH78574.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 109 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 24/40 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M F + + R+ AKL Q E+ R G Q+ IS+LE GKS Sbjct: 1 MEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKS 40 >gi|257091659|ref|YP_003165302.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048668|gb|ACV37855.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 123 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + E +T+ E+ + + S++S+L GK+ ++ M +A L+TPL L Sbjct: 5 IFFTNILRLLDERGMTKNELAAKADISISFLSDLTNGKANPSLKIMEAIAEALETPLPTL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|160916217|ref|ZP_02078424.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991] gi|158431941|gb|EDP10230.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991] Length = 69 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +++ +I NN R++RK L+Q E+ +G ++ IS +ETG+ Sbjct: 1 MKKELILKNNIRSVRKAKGLSQAELAAMSGVSRITISSIETGQ 43 >gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 181 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 14 RKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] Length = 132 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IRK +T K++ + +Q IS E G I++D +I L + LD P+ Sbjct: 40 IRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPI 88 >gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 11 DSLVRKRI------RALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARA 64 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 65 LDTSLDQLVE 74 >gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 189 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +RK A L+Q + +G ++ I+ LE G S I++ ++ LA L+ L+ Sbjct: 21 NLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEVGFVDLVS 78 >gi|312865324|ref|ZP_07725552.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311099435|gb|EFQ57651.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 101 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILA 70 RKE +TQK++ +G +Q I+ +ETGK++ ID ++ +LA Sbjct: 41 RKEKGITQKQLEEMSGVSQPVIARMETGKTSPQIDTVLKVLA 82 >gi|271967597|ref|YP_003341793.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510772|gb|ACZ89050.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 407 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 R RK A +TQ+E+ R G AQSW+S +E +I +D++ ++ Sbjct: 16 RRARKRAGITQRELAQRVGRAQSWVSGVEN--DSIPLDSIALV 56 >gi|262404912|ref|ZP_06081465.1| putative transcriptional regulator [Vibrio sp. RC586] gi|262348878|gb|EEY98018.1| putative transcriptional regulator [Vibrio sp. RC586] Length = 107 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWIS----ELETGKSTINIDNMIILAHTLDTPL 77 + RK+AKL+QK + R G +S S + E GK T ++ + ++A LD PL Sbjct: 11 LKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVRTLKLIADELDVPL 66 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 33/55 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E ++ K++ +TG S++S++E + +I ++ +A LD P++ L Sbjct: 7 RQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFL 61 >gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 110 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RKE KLTQK+I +Q + E+GK +N++ M LA + L Sbjct: 1 MIIERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|307332017|ref|ZP_07611109.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306882357|gb|EFN13451.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 825 Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLD 74 R +R A LTQ+E+ R+G + S I LETGKS + + + +LA LD Sbjct: 8 LRPLRVRAGLTQEELSARSGVSVSTIRRLETGKSRDHRLSTLNLLADALD 57 >gi|160882147|ref|ZP_02063150.1| hypothetical protein BACOVA_00090 [Bacteroides ovatus ATCC 8483] gi|237720176|ref|ZP_04550657.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|293371110|ref|ZP_06617647.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299148042|ref|ZP_07041105.1| conserved domain protein [Bacteroides sp. 3_1_23] gi|156112447|gb|EDO14192.1| hypothetical protein BACOVA_00090 [Bacteroides ovatus ATCC 8483] gi|229450728|gb|EEO56519.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292633768|gb|EFF52320.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298514225|gb|EFI38111.1| conserved domain protein [Bacteroides sp. 3_1_23] Length = 72 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 25/40 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + +RKE LTQ E+ ++G ++ ELE GK T+ +D + Sbjct: 11 KQMRKEHNLTQVELSEKSGVGLRFVRELEQGKQTLRLDKV 50 >gi|298209023|ref|YP_003717202.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus HTCC2559] gi|83848950|gb|EAP86819.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus HTCC2559] Length = 491 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + IR + L+ + +G ++S+++E+E GK D + IL+ LD P Sbjct: 7 KLIFGLKLKQIRTDKNLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSKKLDVPFD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|300313367|ref|YP_003777459.1| hypothetical protein Hsero_4081 [Herbaspirillum seropedicae SmR1] gi|300076152|gb|ADJ65551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 96 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +F+ R R+ A + Q E+ G QS++S++ETG+ +++ +I L Sbjct: 12 LFLKQLREARESANVKQTELSEALGEYQSYVSKVETGERRLDVIELIAWCEAL 64 >gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] Length = 100 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 29/48 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE +T + + G +Q +S E G + INI+++++++ L TP+ Sbjct: 16 RKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPI 63 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ R + +S+ E G S + D +I L+ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTLL 61 >gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] Length = 186 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 31/53 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+++ L+ E+ + G A+S +S+LE G +I+ + + LD P +L++ Sbjct: 19 RQKSGLSLSELSRQAGIAKSTLSQLEAGNGNPSIETLWAICVALDVPFSRLIE 71 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I VN +RK+ LTQ + G +Q IS+ E G I D ++ L+ P+ Sbjct: 5 RCILVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPID 64 Query: 79 KLLK 82 +L+ Sbjct: 65 YILR 68 >gi|118444284|ref|YP_879117.1| LacI/xre family transcriptional regulator [Clostridium novyi NT] gi|118134740|gb|ABK61784.1| Predicted transcriptional regulator, lacI/xre family [Clostridium novyi NT] Length = 221 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 25/37 (67%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+ R +A +T+K++ + G A+ +I E+E+GK IN Sbjct: 8 IRDARLKANMTEKQLAKKIGVAEKFIKEVESGKKVIN 44 >gi|120555195|ref|YP_959546.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325044|gb|ABM19359.1| putative transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 74 Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F N R IRK +Q+ + + G +S++ ++E G+ I ++ + + A L+ Sbjct: 9 FGRNLRAIRKSKGFSQERLAHDAGIDRSYVGKIERGEVNITLEKIYVFAELLEC 62 >gi|320094023|ref|ZP_08025848.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979067|gb|EFW10585.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 111 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+IR+ T +E+ + + ++SE+E G+ + + + ++H L PLW +L Sbjct: 24 DVLRDIRQRQGRTLREVSSEAQVSLGYLSEVERGQKEASSELLDAISHALGVPLWFVL 81 >gi|224537055|ref|ZP_03677594.1| hypothetical protein BACCELL_01931 [Bacteroides cellulosilyticus DSM 14838] gi|224521325|gb|EEF90430.1| hypothetical protein BACCELL_01931 [Bacteroides cellulosilyticus DSM 14838] Length = 72 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 M + +RK+ +LTQ ++ ++G +I ELE GK T+ +D Sbjct: 4 MALAKYVKEMRKQHELTQVDLSEKSGVGLRFIRELEQGKQTLRLD 48 >gi|289826007|ref|ZP_06545166.1| hypothetical protein Salmonellentericaenterica_11630 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 182 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++ L+ EI R G A+S +S+LE G +++ + L LD PL Sbjct: 16 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPL 63 >gi|183220520|ref|YP_001838516.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910629|ref|YP_001962184.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775305|gb|ABZ93606.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778942|gb|ABZ97240.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 207 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IR + ++ NR G +++ +S++E GKS I + +A+ L+ P +LLK Sbjct: 30 NLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELLK 87 >gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 115 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+RK LTQ+++ RTG ++ I ET + +++++ ILA +T LL Sbjct: 8 NIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTDALL 64 >gi|86133032|ref|ZP_01051619.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] gi|85816429|gb|EAQ37620.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] Length = 490 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF R IR + L+ + TG ++S+++E+E GK D + L+ LD P Sbjct: 7 KLIFGLKLRQIRTDKNLSLFGLSKLTGLSKSYLNEIEHGKKYPKPDKIFTLSEKLDIPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 203 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 9 DSLVRKRI------RALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARA 62 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 63 LDTSLDQLVE 72 >gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 198 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D ++R R+ R +R + +E+ R +QS +S +E G+ + +D ++ LA Sbjct: 12 DGLVRRRI------RALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLVTLARA 65 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 66 LDTTLDQLVE 75 >gi|260893216|ref|YP_003239313.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865357|gb|ACX52463.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 93 Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R E LTQ+E+ R G QS I+ LE+G+++ + + +A LD L L+P Sbjct: 37 RLEKGLTQEELARRIGTRQSAIARLESGRTSPTLRMLKKVADALDADLEVRLRP 90 >gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] Length = 214 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 34/56 (60%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +R ++ + R +RK+ LT +++ +R G + ++S+LE K+ ++ ++ LA L Sbjct: 25 DRPVYGSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVL 80 >gi|284028775|ref|YP_003378706.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808068|gb|ADB29907.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 116 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++D ++ + + R R +LTQ+++ R G ++SW++ +E+G ++ L Sbjct: 1 MADVVIPDWTKLGSTLRAARSRQRLTQEQVAERAGVSRSWLARVESGHRAAEFQQVLRLV 60 Query: 71 HTL 73 + L Sbjct: 61 NAL 63 >gi|323140941|ref|ZP_08075854.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414679|gb|EFY05485.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 72 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+ +TQ E+ + +++ +S++E GK N++++ +LA L +LL+ Sbjct: 12 NIMYYRRALSMTQSELAEKAQMSRARVSDIECGKGPFNMESIFLLAQALGVDPVRLLQ 69 >gi|254422987|ref|ZP_05036705.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] gi|196190476|gb|EDX85440.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] Length = 584 Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 29/44 (65%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R++ K+TQ+ + + G +QSWI ++E G+ +I+ ++ + L L Sbjct: 538 REQQKITQRALASSLGKSQSWIRDVEKGRFSISFEDQVRLREAL 581 >gi|169825863|ref|YP_001696021.1| MerR family transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168990351|gb|ACA37891.1| transcriptional regulator, MerR family [Lysinibacillus sphaericus C3-41] Length = 132 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNM 66 H+SD + + R IR L+Q+E+ RTG F++ +S +E G+S I + + Sbjct: 3 HMSDFL----KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTL 58 Query: 67 IILAHTLDTP 76 L LD P Sbjct: 59 ETLMKALDIP 68 >gi|149277242|ref|ZP_01883384.1| possible transcriptional regulator [Pedobacter sp. BAL39] gi|149232119|gb|EDM37496.1| possible transcriptional regulator [Pedobacter sp. BAL39] Length = 86 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + IRK LTQ+ + + +Q+ S++E G S + ++ M +A L+ + +LL P Sbjct: 15 NIKKIRKIKSLTQEFLAAKLDISQNAYSKIELGHSKLTVERMYQIADILNVDVIQLLSP 73 >gi|307947321|ref|ZP_07662655.1| toxin-antitoxin system, antitoxin component, Xre family [Roseibium sp. TrichSKD4] gi|307769463|gb|EFO28690.1| toxin-antitoxin system, antitoxin component, Xre family [Roseibium sp. TrichSKD4] Length = 115 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 +P S + + R IR + K+TQ E+ +R G ++ I +E GK T+ I Sbjct: 10 QPSYSRGTRHGLKLLGSEIRRIRSKRKMTQNELASRVGCSRDSIIAIEAGKPTVAIGAAF 69 Query: 68 ILAHTLDTPLW 78 A L L+ Sbjct: 70 EAASVLGIELF 80 >gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T ++ TG ++S +S LE+G+ ++ ++ LA D PL L+ Sbjct: 16 LRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVPLDDLV 71 >gi|295705886|ref|YP_003598961.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294803545|gb|ADF40611.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 213 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 KE L+ +++ + TG + IS + GK N+ ++ AH L+TPL L+ P Sbjct: 19 KENALSMRKLSSLTGIDTATISRIINGKQQANLHHLKQFAHYLNTPLEALIDP 71 >gi|149276668|ref|ZP_01882811.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] gi|149232337|gb|EDM37713.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] Length = 105 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N R IR+ TQ+ I + +Q+ S+LE G S I+ID + +A L+ +L Sbjct: 21 IVADNIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAELLEVDAGEL 80 Query: 81 L 81 + Sbjct: 81 V 81 >gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24] gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 190 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E +T + TG ++S +S LE+G+ ++ ++ LA D PL L+ Sbjct: 16 LRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLVG 72 >gi|317133712|ref|YP_004090316.1| helix-turn-helix domain protein [Ruminococcus albus 7] gi|315450870|gb|ADU24430.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 90 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R + LTQK++ +R+G AQ IS+LE G + +I + LA+ + L Sbjct: 36 DARNSSGLTQKQLSDRSGIAQGDISKLENGNANPSIRTLQRLANAMGKKL 85 >gi|89074996|ref|ZP_01161441.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90581632|ref|ZP_01237423.1| transcriptional regulator, putative [Vibrio angustum S14] gi|89049235|gb|EAR54799.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90437215|gb|EAS62415.1| transcriptional regulator, putative [Vibrio angustum S14] Length = 106 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWIS----ELETGKSTINIDNMIILAHTLDTPL 77 + IRK AK++QKE+ R G +S S + E GK T +I + +A L PL Sbjct: 11 LKEIRKRAKISQKELGVRVGIDESSASARMNQYEKGKHTPDISTLKKIADELGVPL 66 >gi|228918784|ref|ZP_04082182.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840856|gb|EEM86100.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 65 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N +RKE ++Q+ + G ++++ISE+E K N+ I +A +L T + + Sbjct: 1 MNKIAELRKEKLMSQETLAGLVGLSRTYISEIENNKKQPNVKLAIKIAESLGTNVESIFG 60 Query: 83 P 83 P Sbjct: 61 P 61 >gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus] Length = 77 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F + IR + ++Q+E+ + G +++ISE+E G I++ N+ + LD P Sbjct: 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIP 65 >gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3] gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3 gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3] Length = 223 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M + + RK AKLTQ ++ R G Q+ IS LE GKS Sbjct: 1 MELKDRIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKS 40 >gi|312866305|ref|ZP_07726523.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311097999|gb|EFQ56225.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 68 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER+I N + RKE KL+Q + G +++ IS +ETG+ + ++ LD Sbjct: 1 MEERLILKNRLKEARKEEKLSQGALAKLVGVSRNTISSIETGQYSPTAKLAPVICIALD 59 >gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 97 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 +A+ ER I ++ R RKEA LTQ E+ +TG +Q+ IS LE G Sbjct: 22 EALQPERDITMSLIR-ARKEAGLTQAELSEKTGISQADISRLENG 65 >gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] Length = 228 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 28/57 (49%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +N RK K+TQKE+ R G + IS E G + D + +A LD + L P Sbjct: 14 KNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQALDISINDLFPP 70 >gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] Length = 189 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 31/53 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+++ ++ E+ + G A+S +S+LE G +I+ + L LD P +L++ Sbjct: 22 RQKSGMSLSELARKAGIAKSTLSQLEAGSGNPSIETLWALCVALDIPFSRLIE 74 >gi|17230454|ref|NP_487002.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17132056|dbj|BAB74661.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 102 Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 29/47 (61%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 L+QKE+ R G ++S++SE+E+GK +D + + D P+ ++ Sbjct: 15 LSQKEMAERLGISKSYLSEIESGKKIPTLDLLNRYSGLFDIPVSSIM 61 >gi|289644282|ref|ZP_06476368.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505894|gb|EFD26907.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 488 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 26/37 (70%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+ R+ LTQ+++ R GF QS++S++E+G+ I+ Sbjct: 24 LRSYRQTFGLTQQQLAERLGFDQSYVSKVESGRRAIH 60 >gi|253681287|ref|ZP_04862085.1| transcriptional regulator [Clostridium botulinum D str. 1873] gi|253562525|gb|EES91976.1| transcriptional regulator [Clostridium botulinum D str. 1873] Length = 224 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RNI KE L+ ++ + TG +S IS + K NI+++ ++ LD PL +LLK Sbjct: 15 RNILKERSLSLGKLSSMTGIDKSTISRIINHKQKANINHLQKISKALDIPLEELLK 70 >gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264] gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264] Length = 293 Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F ++ RK+AK++Q+++ + G ++ +++ ETG I+N+ ++ + + + Sbjct: 1 MTFAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RK L+Q+++ TGF +++I +E G+ + N+ I A+ D L +L Sbjct: 9 FGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAFDLSLSELF 68 >gi|167744431|ref|ZP_02417205.1| transcriptional regulator [Burkholderia pseudomallei 14] gi|167897070|ref|ZP_02484472.1| transcriptional regulator [Burkholderia pseudomallei 7894] Length = 93 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R +R + +Q+ + G ++++S +E + +++ N+ +A L+ W Sbjct: 18 RGVLAFNVRLLRVQRGWSQERLALECGLDRTYVSAVERSRWNVSLSNIEAIAKALEVQPW 77 Query: 79 KLLKP 83 LLKP Sbjct: 78 ALLKP 82 >gi|302541253|ref|ZP_07293595.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302458871|gb|EFL21964.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 90 Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R E + E+ +R+G A+ + E+E G++ + LAH LDTP +L Sbjct: 20 LRAERGWSYDELASRSGLARRTVIEIEQGRTVGTLKTWHALAHALDTPFDELFA 73 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 V +FRN ++ ++ +E+ R+G S +S++E +I + +A LD P++K K Sbjct: 10 VQDFRN---KSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMFKFFK 66 >gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187] gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187] gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] Length = 152 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|149020301|ref|ZP_01835193.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] gi|147930603|gb|EDK81585.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] Length = 198 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + +R+E KL+QKEI GF+ +E G+S I + +LA + LL Sbjct: 1 MNRLKELRQEKKLSQKEIAETLGFSLRSFQRMENGESQIKPEKAQLLADYFGVSVANLL 59 >gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 229 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 17 RERMIFVNNFRNIR---KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RE+++ V R +R K+ +T E+ TG + +S++E G ++ ++ + LAH L Sbjct: 37 REKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLAHAL 96 Query: 74 DTPLWKLLK 82 PL + Sbjct: 97 SVPLTSFFR 105 >gi|254250611|ref|ZP_04943930.1| hypothetical protein BCPG_05508 [Burkholderia cenocepacia PC184] gi|124879745|gb|EAY67101.1| hypothetical protein BCPG_05508 [Burkholderia cenocepacia PC184] Length = 94 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R + T+ E+ N TG + +IS++E GK T I +++L L L+ Sbjct: 18 RAARIQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69 >gi|134291299|ref|YP_001115068.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134488|gb|ABO58813.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 94 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R + T+ E+ N TG + +IS++E GK T I +++L L L+ Sbjct: 17 IRAARLQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69 >gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] Length = 323 Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 39/65 (60%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +F +++R++AK++Q+++ + ++ +++ ETG +I+N+ +A D + Sbjct: 19 EHKMFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISI 78 Query: 78 WKLLK 82 +LL+ Sbjct: 79 DELLE 83 >gi|330982062|gb|EGH80165.1| conjugal transfer protein TrbA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 159 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N I E +T+ ++ T + S ISE+ GK + M +A L TPL L Sbjct: 5 IFFTNVLRILGERGMTKHDLAKLTHVSISVISEITNGKGNPTLKTMTAIAEALQTPLPTL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 174 Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ LT + + +TG +S++S++E +ST +I + +A LD + +L Sbjct: 5 LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLF 60 >gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 86 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R IR E LTQ E+ R Q+ IS+LE+G+ + + + LD L + KP Sbjct: 13 DAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLMALDMDLHIMPKP 72 >gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] Length = 320 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 35/66 (53%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ M F +N +R +TQ+++ G + +S+ E+G ST ++D ++ L + Sbjct: 6 RDTMSFRDNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFEVD 65 Query: 77 LWKLLK 82 L L++ Sbjct: 66 LDDLIR 71 >gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99] gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99] Length = 115 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+RK LTQ+++ RTG ++ I ET + +++++ +LA +T LL Sbjct: 8 NIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 >gi|325510651|gb|ADZ22287.1| transcriptional regulator, lacI/xre family [Clostridium acetobutylicum EA 2018] Length = 222 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 25/35 (71%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + IR++AKL+QK+ + G A+ +I+E+E G+ + Sbjct: 9 KKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVV 43 >gi|298479659|ref|ZP_06997859.1| hypothetical protein HMPREF0106_00083 [Bacteroides sp. D22] gi|298274049|gb|EFI15610.1| hypothetical protein HMPREF0106_00083 [Bacteroides sp. D22] Length = 72 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 15/36 (41%), Positives = 23/36 (63%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +RKE LTQ E+ ++G ++ ELE GK T+ +D Sbjct: 13 MRKEHNLTQVELSEKSGVGLRFVRELEQGKQTLRLD 48 >gi|85373672|ref|YP_457734.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594] gi|84786755|gb|ABC62937.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594] Length = 207 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 25/43 (58%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 TQK++ R G QS IS++E G + I +++ +A LD L Sbjct: 21 FTQKQLGERVGLPQSHISKIEGGNVDLQISSLVEIARALDLEL 63 >gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 281 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R EPH L + + + + R + +Q ++ G +Q IS +E+G+S D Sbjct: 5 RREPHAPPHELGQLLRYWRDVRGV------SQLDLSLDAGISQRQISFIESGRSVPGRDT 58 Query: 66 MIILAHTLDTPL 77 ++ LA TLD PL Sbjct: 59 LLTLAQTLDVPL 70 >gi|238026838|ref|YP_002911069.1| putative helix-turn-helix transcriptional regulator [Burkholderia glumae BGR1] gi|237876032|gb|ACR28365.1| Putative helix-turn-helix transcriptional regulator [Burkholderia glumae BGR1] Length = 128 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/81 (22%), Positives = 40/81 (49%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + D + A+L + + R R +LTQ + G ++ ++S++ET + Sbjct: 43 KAQDDGERIPAAVLDAELAGDHPVRAWRNHRRLTQDALATAAGISKPYLSQIETRQRVGT 102 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 D ++ +AH L+ + L++P Sbjct: 103 TDALVKIAHALNVSIAVLIEP 123 >gi|187932677|ref|YP_001886786.1| hypothetical protein CLL_A2598 [Clostridium botulinum B str. Eklund 17B] gi|187720830|gb|ACD22051.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 66 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + R+ +LTQ+++ + G + I LE GK ++ + ++ ++TP+ KL Sbjct: 4 FICNLKKYRQMKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAVDISRVVETPIEKLF 63 >gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24] gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24] Length = 198 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E +T + TG ++S +S LE+G+ ++ ++ LA D PL Sbjct: 24 LRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPL 75 >gi|256376556|ref|YP_003100216.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920859|gb|ACU36370.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 276 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 28/42 (66%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 R IRK + L+ KE+ +R G++++ +S +ETGK ++ + + Sbjct: 14 QLRVIRKRSGLSMKEVADRMGWSEAKVSRMETGKRPVDSEEV 55 >gi|257453157|ref|ZP_05618456.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|317059692|ref|ZP_07924177.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313685368|gb|EFS22203.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] Length = 185 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RNIR L KE+ + + S +S++E G + +++ + +A L+ PL+K Sbjct: 9 NIIRNIRLSKGLLIKEVAMKCDISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 66 >gi|13541016|ref|NP_110704.1| transcription regulator [Thermoplasma volcanium GSS1] Length = 194 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 E M ++ R +RK ++QK++ TG +QS+I+ LE G TIN Sbjct: 2 EMMPNIDELRKMRKNLGISQKDLARVTGVSQSYIARLEKG--TIN 44 >gi|313677734|ref|YP_004055730.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944432|gb|ADR23622.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 494 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++IF R +R E L+ ++ +TG + S+++E+E GK I+ + L+ TL+ Sbjct: 9 KLIFGLKVRQLRLEKGLSFAQLSKQTGLSASYLNEIEKGKKYPKIEKINKLSETLEV 65 >gi|296447228|ref|ZP_06889158.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296255287|gb|EFH02384.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 96 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 24/44 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 L E VN+ R +KL+Q E+ R G +S +S LE+G+ Sbjct: 28 LEEEFALVNSMIEARARSKLSQAEVAKRMGTTESAVSRLESGRG 71 >gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7] gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7] Length = 181 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 28/40 (70%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 R++RKE LT K++ N TG + S++S++E S++ I ++ Sbjct: 10 RDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSL 49 >gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] Length = 120 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 10/63 (15%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ILRER RKE +TQKE+ R G +++I+ +E G++ + + + I +A L Sbjct: 61 ILRER----------RKELGMTQKELAERVGRERTYINRIERGETDLQLSSFIRIAEALG 110 Query: 75 TPL 77 L Sbjct: 111 IML 113 >gi|126699926|ref|YP_001088823.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975889|ref|ZP_05272361.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255093277|ref|ZP_05322755.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315019|ref|ZP_05356602.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517694|ref|ZP_05385370.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650804|ref|ZP_05397706.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255656283|ref|ZP_05401692.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260683886|ref|YP_003215171.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687546|ref|YP_003218680.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450276|ref|ZP_06892037.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878691|ref|ZP_06902696.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|306520704|ref|ZP_07407051.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115251363|emb|CAJ69195.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260210049|emb|CBA64125.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213563|emb|CBE05326.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261039|gb|EFH07873.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430498|gb|EFH16340.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 66 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + R+ +LTQ+++ + G + I LE GK ++ I ++ +DTP+ +L Sbjct: 4 FICNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|14324400|dbj|BAB59328.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 196 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 E M ++ R +RK ++QK++ TG +QS+I+ LE G TIN Sbjct: 4 EMMPNIDELRKMRKNLGISQKDLARVTGVSQSYIARLEKG--TIN 46 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R R LTQ+++ TG S+I ++E G+ + +++ +I ++ +LDT + Sbjct: 11 VLLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISY 70 Query: 80 LL 81 +L Sbjct: 71 IL 72 >gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862] Length = 137 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++F N+RK+ L+Q+++ ++ + +S+ ETG+S+ +++ M +A LD + Sbjct: 3 IVFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSVQV 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|295096644|emb|CBK85734.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 75 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + RKE +TQ ++ G QS+I+++E+G+ +++ + LA +D + +L Sbjct: 13 INALKKARKEKGITQAQLAEALGKPQSFIAKVESGERRLDVVEFVHLARLVDVNISLIL 71 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 29/53 (54%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R E L+Q+E+ R + I E+GK+ +N++N+ ++A L P+ + Sbjct: 20 RHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVPVGYFFQ 72 >gi|2340851|emb|CAA74068.1| hypothetical protein [Ralstonia eutropha H16] Length = 105 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + +RK+ +Q+ + +G ++S++S +E+GK + + N+ LA TL P Sbjct: 8 LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVP 63 >gi|327439446|dbj|BAK15811.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 78 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N IRKE KL+Q ++ + ETGKS N D M ++++ D P+ + P Sbjct: 4 NLLRIRKENKLSQAKMAEILKIDYTTYHNKETGKSKFNADEMFLISNLFDLPIEDIFLP 62 >gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 101 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RKE LTQ+++ + G A + I+ +ETG I+ID I L +T L Sbjct: 43 KALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTL 93 >gi|257066745|ref|YP_003153001.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798625|gb|ACV29280.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 491 Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N RKE +TQK + + TG ++ IS LE+ T +ID + + LD Sbjct: 15 NKRKEKGITQKSLADTTGINRAMISRLESCDYTPSIDQLQAIGEVLD 61 >gi|328957520|ref|YP_004374906.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] gi|328673844|gb|AEB29890.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] Length = 166 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE KLTQ+++ + +Q +S ETGK+ +I ++I LA D L Sbjct: 11 RKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSL 58 >gi|253581505|ref|ZP_04858730.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836575|gb|EES65110.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 84 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +NIR E K TQKE G Q +S E +S IN+ +I + LD K++K Sbjct: 20 KNIRVE-KYTQKEFSKELGVTQKTVSHYENCRSEINLKLLIKICKILDINFIKMMKK 75 >gi|170700652|ref|ZP_02891649.1| helix-turn-helix domain protein [Burkholderia ambifaria IOP40-10] gi|171320500|ref|ZP_02909529.1| helix-turn-helix domain protein [Burkholderia ambifaria MEX-5] gi|172065528|ref|YP_001816240.1| helix-turn-helix domain-containing protein [Burkholderia ambifaria MC40-6] gi|170134424|gb|EDT02755.1| helix-turn-helix domain protein [Burkholderia ambifaria IOP40-10] gi|171094263|gb|EDT39341.1| helix-turn-helix domain protein [Burkholderia ambifaria MEX-5] gi|171997770|gb|ACB68687.1| helix-turn-helix domain protein [Burkholderia ambifaria MC40-6] Length = 94 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 28/53 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R + T+ E+ N TG + +IS++E GK T I +++L L L+ Sbjct: 17 IRATRLQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69 >gi|65319713|ref|ZP_00392672.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] Length = 222 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +RKE T ++ RTG + +S+LE GK+ +N ++ LA L + L P Sbjct: 28 LRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTDLNFSSVNKLATGLGLAVTDLTNP 85 >gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] Length = 188 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 17 EKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 70 >gi|268593678|ref|YP_003297620.1| putative transcriptional repressor protein [Edwardsiella tarda EIB202] gi|267986581|gb|ACY86409.1| putative transcriptional repressor protein [Edwardsiella tarda EIB202] Length = 103 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 25/41 (60%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +TQKE+ + TG+ + ++EL GK+ + ID +IL T Sbjct: 24 ITQKELASHTGWTRKHVNELCKGKARVTIDTALILGKAFGT 64 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +I+R+ ++F + +RK+ L+Q + G IS E GKS N+ + L L Sbjct: 5 SIIRKIIMFNEKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEAL 64 Query: 74 DTPL 77 D PL Sbjct: 65 DVPL 68 >gi|113867108|ref|YP_725597.1| hypothetical protein H16_A1088 [Ralstonia eutropha H16] gi|113525884|emb|CAJ92229.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 146 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 33/53 (62%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ +Q+ + +G ++S++S +E+GK + + N+ LA TL P ++L Sbjct: 16 LRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEML 68 >gi|325970185|ref|YP_004246376.1| transcriptional regulator, y4mF family [Spirochaeta sp. Buddy] gi|324025423|gb|ADY12182.1| transcriptional regulator, y4mF family [Spirochaeta sp. Buddy] Length = 70 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 23/37 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK KLTQ+E R+G ++ ELE GK T+ +D + Sbjct: 12 RKRNKLTQEEFALRSGLGLRFVRELEQGKPTVRLDKV 48 >gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 101 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RKE LTQ+++ + G A + I+ +ETG I+ID I L +T L Sbjct: 43 KALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTL 93 >gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 210 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKEA LT ++ R+G A S +S++E + + D ++ LA L + L+ Sbjct: 28 LRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTILSLAEGLGVDITHLV 83 >gi|213962877|ref|ZP_03391137.1| conserved domain protein [Capnocytophaga sputigena Capno] gi|213954534|gb|EEB65856.1| conserved domain protein [Capnocytophaga sputigena Capno] Length = 68 Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK+ +LTQ E+ R G ++ ELE GK T+ +D + Sbjct: 13 RKQLRLTQPELAMRAGVGLRFVRELEQGKKTLRLDKV 49 >gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 153 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + RK+ KLTQKE+ + A + IS E G++ +DN+ +A P KLL Sbjct: 20 DNIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIEQMASIFGIPKSKLL 77 >gi|19552456|ref|NP_600458.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62390122|ref|YP_225524.1| Cro/CI family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21324002|dbj|BAB98628.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41325458|emb|CAF19938.1| TRANSCRIPTIONAL REGULATOR, CRO/CI FAMILY [Corynebacterium glutamicum ATCC 13032] Length = 75 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N RKE L Q E+ + G ++ +I ++E GK+T+ +D +I + L L Sbjct: 14 NGRKELGLRQGELADLAGVSERFIRDVEKGKTTVRLDKVIDVLRVLGLEL 63 >gi|301164396|emb|CBW23954.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 101 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + RK A+LTQ+E+ NR G +S+IS++E G T + + +A + Sbjct: 47 DARKNARLTQEELANRIGADKSYISKIERGLITPTVSTLYRIAAAM 92 >gi|254502300|ref|ZP_05114451.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438371|gb|EEE45050.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 100 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +RK LT E+ R G + W+S++E G S ++ +++ +A D P Sbjct: 7 DLRALRKTKGLTLTELAERLGKSVGWLSQIERGISKLSSEDIDRMAGVFDVP 58 >gi|213161102|ref|ZP_03346812.1| hypothetical protein Salmoneentericaenterica_14098 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428345|ref|ZP_03361095.1| hypothetical protein SentesTyphi_24034 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 265 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R + +TQ E+ G +Q I +ETGK + + + LD PL Sbjct: 4 NNIKQLRTQLSITQHELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57 >gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108] gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 115 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+RK LTQ+++ RTG ++ I ET + +++++ +LA +T LL Sbjct: 8 NIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 >gi|52143068|ref|YP_083761.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|206973592|ref|ZP_03234510.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095997|ref|YP_002530054.1| transcriptional regulator, merr family [Bacillus cereus Q1] gi|51976537|gb|AAU18087.1| possible transcriptional regulator, MerR family [Bacillus cereus E33L] gi|206747748|gb|EDZ59137.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221240055|gb|ACM12765.1| possible transcriptional regulator, MerR family [Bacillus cereus Q1] gi|324326426|gb|ADY21686.1| putative transcriptional regulator, MerR family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 186 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|225378330|ref|ZP_03755551.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM 16841] gi|225209767|gb|EEG92121.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM 16841] Length = 147 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++ R+ A LTQK++ +TG QS IS+LE G + +I + LA +D L Sbjct: 82 LALASSLARAREYAMLTQKQLSEKTGIYQSDISKLERGNANPSILTLKRLADAMDMTL 139 >gi|160941439|ref|ZP_02088775.1| hypothetical protein CLOBOL_06331 [Clostridium bolteae ATCC BAA-613] gi|158435649|gb|EDP13416.1| hypothetical protein CLOBOL_06331 [Clostridium bolteae ATCC BAA-613] Length = 67 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 23/34 (67%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +NIRKE L QK+I + QS+IS++E GK+ Sbjct: 11 KNIRKEKGLRQKDIAHAMTVEQSYISQVENGKTV 44 >gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185] gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185] Length = 263 Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLWKL 80 + R+ RKE KLTQK + S I++ E G ST N+I L+ L+ +P W L Sbjct: 29 DRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEWLL 86 >gi|30262414|ref|NP_844791.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527707|ref|YP_019056.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185259|ref|YP_028511.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118477813|ref|YP_894964.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870483|ref|ZP_02215137.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633086|ref|ZP_02391412.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639621|ref|ZP_02397891.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687038|ref|ZP_02878257.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706715|ref|ZP_02897174.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649613|ref|ZP_02932615.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565573|ref|ZP_03018493.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033861|ref|ZP_03101272.1| DNA-binding protein [Bacillus cereus W] gi|196043683|ref|ZP_03110921.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218903548|ref|YP_002451382.1| DNA-binding protein [Bacillus cereus AH820] gi|225864377|ref|YP_002749755.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227814774|ref|YP_002814783.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228927463|ref|ZP_04090518.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933732|ref|ZP_04096579.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946017|ref|ZP_04108357.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985502|ref|ZP_04145659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229091390|ref|ZP_04222604.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42] gi|229121957|ref|ZP_04251175.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|229155991|ref|ZP_04284092.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342] gi|229184624|ref|ZP_04311825.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|229196624|ref|ZP_04323368.1| Transcriptional regulator, XRE [Bacillus cereus m1293] gi|229604374|ref|YP_002866746.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684990|ref|ZP_05148850.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722396|ref|ZP_05184184.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737437|ref|ZP_05195141.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743378|ref|ZP_05201063.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751753|ref|ZP_05203790.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760271|ref|ZP_05212295.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257045|gb|AAP26277.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502855|gb|AAT31531.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179186|gb|AAT54562.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118417038|gb|ABK85457.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] gi|164713638|gb|EDR19161.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167512330|gb|EDR87706.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531898|gb|EDR94563.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128446|gb|EDS97314.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669089|gb|EDT19833.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084687|gb|EDT69745.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563600|gb|EDV17565.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195993541|gb|EDX57498.1| DNA-binding protein [Bacillus cereus W] gi|196025992|gb|EDX64661.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218536010|gb|ACK88408.1| DNA-binding protein [Bacillus cereus AH820] gi|225787172|gb|ACO27389.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227004110|gb|ACP13853.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228586980|gb|EEK45054.1| Transcriptional regulator, XRE [Bacillus cereus m1293] gi|228598837|gb|EEK56456.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228627598|gb|EEK84324.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342] gi|228661485|gb|EEL17107.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|228691932|gb|EEL45675.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42] gi|228774267|gb|EEM22676.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813663|gb|EEM59944.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825965|gb|EEM71751.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832182|gb|EEM77764.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229268782|gb|ACQ50419.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 186 Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 186 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 32/51 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ A L+ +++ N+TG + IS+LE ++ +I + +L+ LD P+ Sbjct: 31 RLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIRTLRLLSIALDVPI 81 >gi|295840749|ref|ZP_06827681.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197696319|gb|EDY43252.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 75 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 EP DA R+ + R+ R L+Q+++ RTG + + +E+G + + Sbjct: 4 EPDALDAFRRQ---LADRIRDHRLWRNLSQEQVAERTGLSAHTVQRIESGTRETKVSYLF 60 Query: 68 ILAHTLDTPLWKLL 81 L H LD + LL Sbjct: 61 RLTHALDCEVRDLL 74 >gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 101 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RKE LTQ+++ + G A + I+ +ETG I+ID I L +T L Sbjct: 43 KALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTL 93 >gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N R RKE LTQ+++ ++ + +S E S N+D ++ L+ L PL Sbjct: 1 MQFANVLRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDI 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 206 Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 30/46 (65%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RKE LT KE+ R+G + ++IS++E GK+ +I +++ ++ L Sbjct: 32 RKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALGV 77 >gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020] Length = 233 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 A + + M + + RK A+LTQ E+ R+G Q+ +SE+E G Sbjct: 15 AFIFQPMELKDRLKQARKHARLTQAELAERSGIKQASVSEIERG 58 >gi|325662696|ref|ZP_08151293.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086435|ref|ZP_08335515.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471035|gb|EGC74262.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406201|gb|EGG85724.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 68 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 25/39 (64%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +I NN +N R E KL+Q E+ G +++ IS +ETG+ Sbjct: 5 LILKNNLKNARAERKLSQMELAELVGVSRNTISSIETGQ 43 >gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R+ + LT + +R G + + +S LETG+ ++ ++ LA T T + LL Sbjct: 35 LRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLTLARTYGTTVSDLLG 91 >gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 179 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RN+R+ A L+Q+++ R ++++S++E K+T + ++ LA L L LL Sbjct: 67 IAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLSSLERLAKALQVTLPDLL 126 >gi|298244352|ref|ZP_06968158.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297551833|gb|EFH85698.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 442 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ R LTQ+++ GF QS+IS+LE G+ +I + +AH L P Sbjct: 83 LKHYRSIHHLTQRDLATILGFDQSYISKLENGQGLRDIAVLSRIAHCLAIP 133 >gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis XB6B4] Length = 393 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + L Q E + G + +S+ E G+S +I+N+ +++ LD + Sbjct: 16 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 75 Query: 80 LL 81 L+ Sbjct: 76 LI 77 >gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] Length = 403 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + L Q E + G + +S+ E G+S +I+N+ +++ LD + Sbjct: 26 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 85 Query: 80 LL 81 L+ Sbjct: 86 LI 87 >gi|257061063|ref|YP_003138951.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256591229|gb|ACV02116.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 173 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 24/39 (61%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 R+ + +RK+ LTQ+++ + G QSW+S+LE+ Sbjct: 35 RISLTQAMKQLRKKVGLTQQQLAEKLGVTQSWVSKLESA 73 >gi|168185803|ref|ZP_02620438.1| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296146|gb|EDS78279.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 221 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 25/37 (67%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+ R +A +T+K++ + G A+ +I E+E+GK IN Sbjct: 8 IRDARLKANVTEKQLARKIGVAEKFIKEVESGKKVIN 44 >gi|107022803|ref|YP_621130.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686957|ref|YP_840204.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892992|gb|ABF76157.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116652672|gb|ABK13311.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 94 Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R + T+ E+ N TG + +IS++E GK T I +++L L L+ Sbjct: 18 RAARIQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69 >gi|182433810|ref|YP_001821529.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|182440913|ref|YP_001828632.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462326|dbj|BAG16846.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469429|dbj|BAG23949.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 87 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R E T E+ +RTG A+ + E+E G++ ++ +AH LD P+ Sbjct: 20 LRSEHGWTYDELAHRTGLARRTLIEIEQGRTIGSLKTWHAIAHALDVPV 68 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE+ TQ+E+ NR G +++ ETG S +I+ + +A L L LL Sbjct: 5 NVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDTLL 62 >gi|320530460|ref|ZP_08031518.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas artemidis F0399] gi|320137293|gb|EFW29217.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas artemidis F0399] Length = 93 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 28/46 (60%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + R A LTQKE+ ++G AQS IS+LE G + ++ + LA + Sbjct: 36 DARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLAAGM 81 >gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 169 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + +S+ E G S + D +I L+ L+TP+ LL Sbjct: 5 NIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTLL 61 >gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 183 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 M N R IRKE LT K++ + G ++++I ETG+ + ++ LA L Sbjct: 1 MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKAL 54 >gi|290791048|gb|ADD63273.1| TrbA mating pair formation protein, transcription regulator [uncultured bacterium pAKD4] Length = 125 Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + +E +T+ ++ + G + S++S+L GK+ ++ M +A L PL L Sbjct: 5 IFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPTL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12] gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12] Length = 184 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIR L KE+ ++ + S +S++E G + +++ + +A L+ PL+K Sbjct: 12 KNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFKFF 66 >gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK L+ KE+ N S +S++E G + +I + +LA LD P + L Sbjct: 14 RKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + IS+ E G S + + +I ++ L+TP+ LL Sbjct: 105 NLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVSILL 161 >gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] Length = 112 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 30/50 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IRK KLTQ+++ + G + ++ E+E G+ T+++ + +A L T Sbjct: 10 IKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGT 59 >gi|330836178|ref|YP_004410819.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748081|gb|AEC01437.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 99 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 IRK LTQ E+ + G +Q+ IS++E GK I I + LA+ + Sbjct: 44 IRKAQNLTQAELAEKVGLSQTDISKIEKGKKRITISRLQELANGM 88 >gi|197295277|ref|YP_002153818.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|195944756|emb|CAR57361.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 94 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R + T+ E+ N TG + +IS++E GK T I +++L L L+ Sbjct: 18 RAARIQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLSELGVRLY 69 >gi|108803015|ref|YP_642952.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764258|gb|ABG03140.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 77 Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R++R A ++Q+E+ R+G A+ IS+LETGK + LA L+ Sbjct: 5 HLRDLRLRAVMSQEELARRSGVARDTISKLETGKRRAYPSTVRKLAEGLEV 55 >gi|293364818|ref|ZP_06611535.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291316268|gb|EFE56704.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 115 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 23/41 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 R IRKE L+Q+ + + G +IS LET S I ID + Sbjct: 14 IRIIRKEKNLSQQNLSEKAGVGIDYISNLETKGSNIKIDTL 54 >gi|91217908|ref|ZP_01254861.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC 700755] gi|91183885|gb|EAS70275.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC 700755] Length = 492 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++IF + IR E KL+ + +G ++S+++E+E GK D + L+ L+ P Sbjct: 7 KLIFGLKLKQIRTEKKLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIATLSEKLEVP 64 >gi|301053933|ref|YP_003792144.1| putative MerR family transcriptional regulator [Bacillus anthracis CI] gi|300376102|gb|ADK05006.1| possible transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 186 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65 >gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 135 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S AI R + + + RKE L+QK++ GF Q ++S +E G+ ++++ ++ ++ Sbjct: 25 SLAIGRIKGQVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEENLSLETLVKISA 84 Query: 72 TL 73 L Sbjct: 85 CL 86 >gi|300814289|ref|ZP_07094561.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511556|gb|EFK38784.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 67 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 NN IRK+ +TQK+I N G +IS+LE G S ++ +A L+ + +L Sbjct: 4 NNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEIARFLECGVEEL 60 >gi|258406011|ref|YP_003198753.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798238|gb|ACV69175.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 25/49 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + LTQ E+ +TG QS IS +E GK I + LA L+ Sbjct: 62 LRGARNKEGLTQVELAEKTGIPQSHISSMENGKKEIGKERAKRLAEVLN 110 >gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + +R E L+QKEI N G ++ ++ ETGKS + D + LA + Sbjct: 1 MLFNEIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str. 13] gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium perfringens str. 13] Length = 367 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + RK+ KLTQ+++ + G A+S +S E G NI +I L+ ++ + L+ Sbjct: 9 FSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLI 68 >gi|313896884|ref|ZP_07830431.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974331|gb|EFR39799.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 96 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 27/43 (62%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + R A LTQKE+ ++G AQS IS+LE G + ++ + LA Sbjct: 39 DARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLA 81 >gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 460 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +TQ ++ F+ S+IS +E GK ++ + ILA LD PL LL+ Sbjct: 20 NIREVRTKLNMTQAQLAAPE-FSISYISAIERGKIRPSLKALSILARRLDVPLTFLLE 76 >gi|121582580|ref|YP_974109.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42] gi|120608636|gb|ABM44374.1| helix-turn-helix domain protein [Acidovorax sp. JS42] Length = 120 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|73663255|ref|YP_302036.1| hypothetical protein SSP1946 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495770|dbj|BAE19091.1| hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 274 Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLD 74 RKE T KE+ N++G ++S+IS++E ++ + ++ LA++LD Sbjct: 11 RKEKGFTMKELANKSGISESYISKIENNSVSLPKKERLLSLAYSLD 56 >gi|289641241|ref|ZP_06473408.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509003|gb|EFD29935.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 298 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 28/43 (65%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +L+ +E+ +RTG +QS IS +ETG T + D++ + LD P Sbjct: 35 ELSGQELASRTGMSQSKISRIETGTVTPSPDDVEAIVRALDEP 77 >gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 97 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 29/48 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK+ +TQ+E+ +R G +S I +E G ++ ++ + ++ L+TP Sbjct: 34 RKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTPF 81 >gi|227872217|ref|ZP_03990579.1| XRE family transcriptional regulator [Oribacterium sinus F0268] gi|227841940|gb|EEJ52208.1| XRE family transcriptional regulator [Oribacterium sinus F0268] Length = 99 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L+ I + + RK++ +TQKE+ TG AQ IS+LE G + +I + LA + Sbjct: 25 LQPEHIVIQAMIDARKKSGMTQKELAEITGIAQGDISKLERGSANPSIRTLQRLAKGM 82 >gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 209 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + IR+ +TQKE + G Q ++S +E GK ++ +I L H+ Sbjct: 15 KEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIALCHS 60 >gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 292 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IRKE K+TQKE+ + +Q+ IS++E G+++ ID + ++ L PL L + Sbjct: 11 NEIKRIRKEKKMTQKELCDGIC-SQAEISKIENGRNSPTIDLLQQISKRLRVPLSLLFR 68 >gi|284048500|ref|YP_003398839.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952721|gb|ADB47524.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 92 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 V++ R+E ++Q+ + R G QS I+ +ET K+T +D ++ L LD L Sbjct: 31 IVSSIIRRRQELGISQRTLAERCGIPQSSIARIETLKTTPKLDTLVKLLQALDLKL 86 >gi|253580925|ref|ZP_04858187.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847767|gb|EES75735.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 69 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 24/37 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK+A LTQ++ R+G ++ ELE GK T+ +D + Sbjct: 15 RKKAGLTQEDFAIRSGLGLRFVRELEQGKETVRLDKV 51 >gi|153868942|ref|ZP_01998661.1| transcriptional regulator [Beggiatoa sp. PS] gi|152074493|gb|EDN71342.1| transcriptional regulator [Beggiatoa sp. PS] Length = 102 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 29/49 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N + RK LTQK+I RTG ++ I ++E G + ++I + +++ L Sbjct: 23 NIKLARKRRTLTQKQISERTGLSRVTIRKIENGDAGVSIGHYLVVLAVL 71 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +++ F N + +R + LT KE+ + +++LE+GK +++++I L+ L Sbjct: 69 GVVQSENTFSKNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEAL 128 Query: 74 DTP 76 D P Sbjct: 129 DAP 131 >gi|190571946|ref|YP_001967670.1| conjugal transfer protein TrbA [Comamonas testosteroni CNB-1] gi|311109687|ref|YP_003982539.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans A8] gi|119943684|gb|ABM06206.1| TrbA [Comamonas testosteroni CNB-1] gi|310764376|gb|ADP19824.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans A8] Length = 125 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M Sbjct: 11 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVM 56 >gi|55418008|ref|YP_133908.1| TrbA regulator protein [Plasmid pB3] gi|54969562|emb|CAG25998.1| TrbA regulator protein [Plasmid pB3] Length = 120 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|10955210|ref|NP_044239.1| hypothetical protein R751p28 [Enterobacter aerogenes] gi|77993230|ref|YP_358820.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8] gi|84310686|ref|YP_447016.1| conjugal transfer protein TrbA [uncultured bacterium] gi|115345483|ref|YP_771668.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|466379|gb|AAA17042.1| TrbA [Plasmid R751] gi|1572547|gb|AAC64442.1| TrbA [Enterobacter aerogenes] gi|77733983|emb|CAI10747.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8] gi|84094966|emb|CAJ15577.1| TrbA repressor protein [uncultured bacterium] gi|115286660|gb|ABI92134.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 120 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 116 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 KE ++QKE RTG A+S IS+ + ++ D ++I+ LD ++LL Sbjct: 13 KEKGMSQKEFAQRTGIAESSISDWKKKRTNPVSDKILIICEVLDVTPYELL 63 >gi|45368590|ref|NP_990918.1| hypothetical protein pEST4011_44 [Achromobacter denitrificans] gi|44937759|gb|AAS49459.1| TrbA [Achromobacter denitrificans] Length = 125 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + +E +T+ ++ + G + S++S+L GK+ ++ M +A L PL L Sbjct: 5 IFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPTL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|31795118|ref|NP_857976.1| conjugal transfer protein TrbA [uncultured bacterium] gi|32455873|ref|NP_862526.1| TrbA protein [Pseudomonas sp. ADP] gi|49176918|ref|YP_025421.1| regulatory protein for mating pair formation [Ralstonia eutropha JMP134] gi|72384303|ref|YP_293656.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|13937509|gb|AAK50320.1|U66917_89 TrbA protein [Pseudomonas sp. ADP] gi|31746362|emb|CAD97487.1| TrbA protein [uncultured bacterium] gi|39777498|gb|AAR31073.1| regulatory protein for mating pair formation [Ralstonia eutropha JMP134] gi|72123656|gb|AAZ65799.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 120 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 490 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + F +++RK+ LT ++ R G A S +S LE GK + + LA L+ P+ + Sbjct: 19 LAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLKSLATALNVPVEE 78 Query: 80 LLK 82 LL+ Sbjct: 79 LLR 81 >gi|15903016|ref|NP_358566.1| hypothetical protein spr0972 [Streptococcus pneumoniae R6] gi|116515940|ref|YP_816428.1| hypothetical protein SPD_0951 [Streptococcus pneumoniae D39] gi|148989105|ref|ZP_01820495.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|149019666|ref|ZP_01834985.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|168491958|ref|ZP_02716101.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168494498|ref|ZP_02718641.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|221231810|ref|YP_002510962.1| DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854561|ref|YP_002736073.1| hypothetical protein SPJ_1004 [Streptococcus pneumoniae JJA] gi|15458585|gb|AAK99776.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076516|gb|ABJ54236.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147925328|gb|EDK76406.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|147931041|gb|EDK82021.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|183573788|gb|EDT94316.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183575609|gb|EDT96137.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220674270|emb|CAR68810.1| putative DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225724252|gb|ACO20105.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|301794185|emb|CBW36602.1| putative DNA_binding protein [Streptococcus pneumoniae INV104] gi|332202922|gb|EGJ16990.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 73 Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R++ LTQK+I F S +++E G+ T+ D ++ L++ D LL+ Sbjct: 6 RDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLLE 61 >gi|299537817|ref|ZP_07051106.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726796|gb|EFI67382.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 184 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/64 (23%), Positives = 37/64 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++F N + IR+ KL+ +++ +G +++ I ++E G+S+ + + +A+ L + Sbjct: 6 LVFARNLKAIREREKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLRVSFTE 65 Query: 80 LLKP 83 L+ P Sbjct: 66 LMHP 69 >gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 96 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + L L T K Sbjct: 8 RNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63 >gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 104 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Query: 9 PHLSDAI----LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 PH+++ + L + + N R +R + ++Q+ + +R G ++ +S +E G + +D Sbjct: 4 PHMAENVSPRLLELQALIAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRLD 63 Query: 65 NMIILAHTLDTPLWKLL 81 ++ LA L +LL Sbjct: 64 TLVSLAAALGVSETELL 80 >gi|170720494|ref|YP_001748182.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169758497|gb|ACA71813.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 229 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M + + + RK A+LTQ E+ TG Q+ IS+LE G+S + N I + +W Sbjct: 1 MEYKDRIKAARKHARLTQAELAAMTGINQASISDLERGRSQRSSYNSTIARACGVSAIW 59 >gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] Length = 210 Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 40 TNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 89 >gi|238020422|ref|ZP_04600848.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147] gi|237867402|gb|EEP68408.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147] Length = 198 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 28 NIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPL 77 N RK+A LTQ+E+ GF+ + +S +E G++ D M+ ++ + PL Sbjct: 11 NARKQANLTQEELAEAIGFSGKGSVSAIENGRNKPTFDIMVKISEVCNYPL 61 >gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] Length = 89 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R++RK+ LTQ+++ + + +I+++ETGK T ++ + A D L LL Sbjct: 8 YGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLDYLL 67 >gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 200 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D ++R+R+ R +R + +E+ R +QS +S +E G+ + +D ++ +A Sbjct: 12 DGLVRKRI------RALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARA 65 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 66 LDTTLDQLVE 75 >gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 210 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 40 TNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGVDF 93 >gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] Length = 102 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ KLT E+ R G +Q S LE G I +D +I +++ L LL Sbjct: 16 RKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGISPQSLL 67 >gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB056] gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB058] gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB059] gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 183 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 13 TNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62 >gi|148545072|ref|YP_001272442.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|227364226|ref|ZP_03848322.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683429|ref|ZP_08162945.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532106|gb|ABQ84105.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|227070771|gb|EEI09098.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977779|gb|EGC14730.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 63 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +NN R RK+ KL+Q E+ G A+ I+ +E K + + LAH L T L Sbjct: 1 MNNVRKYRKQQKLSQLELAKEIGVARQTINLIENDKYNPTLGLCLNLAHALHTDL 55 >gi|298206675|ref|YP_003714854.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] gi|83849306|gb|EAP87174.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] Length = 67 Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F NN R +RKE +Q+E+ ++ +++I +E + I + N+ ++ LD + +L Sbjct: 8 FGNNIRRLRKEQGFSQEELAHKADLHRTYIGMIERAEKNITLLNIGKISKALDVEIKELF 67 >gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 185 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F +RKEA LTQ+++ + ++ +++ E G+S ++ + +A T + L + Sbjct: 1 MVFSEQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|111026104|ref|YP_708387.1| repressor protein [Rhodococcus jostii RHA1] gi|110824947|gb|ABH00229.1| probable repressor protein [Rhodococcus jostii RHA1] Length = 200 Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++R A LTQK + NRTG + + I +E G+ +++ + LA L Sbjct: 133 DLRNLAGLTQKHVANRTGLSTTTIGRIERGEGSLSDRHATALAEAL 178 >gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 108 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 N R R E +TQ+++ N TG + ++IS LE G + ++ ++ +A L T + KL+ Sbjct: 7 NIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDKLV 64 >gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO] gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae TMO] Length = 177 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R LTQ+E+ RT ++S+IS+LE+ K+++ +D + + L T L Sbjct: 5 GKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDL 58 >gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 34.3 bits (77), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +E+++F N +RK ++Q E+ ++ G ++ +S+ ETG+S +I+ LA Sbjct: 3 KEKIMFAENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVT 62 Query: 77 LWKLL 81 + L+ Sbjct: 63 VDDLI 67 >gi|226328473|ref|ZP_03803991.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198] gi|225203206|gb|EEG85560.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198] Length = 109 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TP 76 N + +R++ K+T+ E+ R G S+LE G I +D +I +++ L TP Sbjct: 8 NRIKMLRRQLKITENEMSERLGITMLHYSQLEDGHIKITVDQLITISYILGVTP 61 >gi|116696126|ref|YP_841702.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530625|emb|CAJ96972.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 204 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 PH+ +++ M+ R +R +LT ++ + G ++ +S++ETG + +D + Sbjct: 14 PHIEESV---GMVI----RELRLRERLTIAQVAEQAGLSRGMLSKIETGSTMAGMDTLAR 66 Query: 69 LAHTLDTPLWKLLK 82 +A L P+ L Sbjct: 67 IARALGVPMAVLFS 80 >gi|262371152|ref|ZP_06064473.1| RtrR protein [Acinetobacter johnsonii SH046] gi|262313882|gb|EEY94928.1| RtrR protein [Acinetobacter johnsonii SH046] Length = 70 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE K TQ+ + + G +S++ +E G+ I + + +AH L + LL Sbjct: 12 IRKKRKEKKFTQEALALQCGIDRSYLGRIERGEVNITVLKLYEIAHILKVEPYHLL 67 >gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900] Length = 183 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 13 TNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62 >gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 183 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 13 TNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62 >gi|13990971|dbj|BAB47254.1| y4dJ [Agrobacterium tumefaciens] Length = 70 Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR KLTQ+E+ +RTG + I +E + + + + +AH L +L+ Sbjct: 4 NLRRIRHVKKLTQEELAHRTGLSVRHIGAIERAEMSATVTVLGQIAHALSVEPAELV 60 >gi|269955944|ref|YP_003325733.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304625|gb|ACZ30175.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 266 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R+ A +TQ+E+ R G Q+ I+ +ETG+ ++ ++ LA L ++P Sbjct: 11 LRRVREGAAMTQRELAQRAGVDQATIAGIETGRRMPSLPTLVRLAEAAGRQLRVEIEP 68 >gi|145295374|ref|YP_001138195.1| hypothetical protein cgR_1312 [Corynebacterium glutamicum R] gi|140845294|dbj|BAF54293.1| hypothetical protein [Corynebacterium glutamicum R] Length = 141 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 26/40 (65%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 N RKE L Q E+ + G ++ +I ++E GK+T+ +D +I Sbjct: 80 NGRKELGLRQGELADLAGVSERFIRDVEKGKTTVRLDKVI 119 >gi|332665060|ref|YP_004447848.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333874|gb|AEE50975.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 174 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 10 HLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 H + + R+R + V R RKEA LTQ+E+ R+G + +IS +E + I + + Sbjct: 100 HSTPDLNRDRGVPVGEVLRQARKEAGLTQEELAKRSGTTKHYISRIENHHADIEVGTL 157 >gi|167855811|ref|ZP_02478564.1| transcriptional regulator [Haemophilus parasuis 29755] gi|167853090|gb|EDS24351.1| transcriptional regulator [Haemophilus parasuis 29755] Length = 77 Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R + +Q+ + N ++++S +E + +++ N+ LA L P W+LLK Sbjct: 4 NIQTLRVQKGWSQERLENECELDRTYVSAVEHCRWNVSLSNIEKLATALSCPAWQLLK 61 >gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] Length = 392 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+A ++QKE+ G S +S+ E+GK I + LA PL L Sbjct: 13 LRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVPLSSLF 68 >gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 108 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ +L+Q + G ++ E+E G + I++ N+ +A L ++LL Sbjct: 12 IRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNNISVKNLGQIAAALGVETYELL 67 >gi|167758839|ref|ZP_02430966.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] gi|167663579|gb|EDS07709.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] Length = 350 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE LTQ+++ +R G + + + ETG S +I + LA L T L LL Sbjct: 8 RTRRKEMNLTQEQVASRLGVSAPAVHKWETGNSYPDITLLPALARLLGTDLNTLL 62 >gi|255014642|ref|ZP_05286768.1| putative DNA-binding protein [Bacteroides sp. 2_1_7] Length = 68 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 25/36 (69%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +RK+ KLTQ+E+ ++G ++ +LE GK T+ +D Sbjct: 11 LRKQYKLTQEELSLKSGVGLRFVRDLEQGKETLRLD 46 >gi|162448725|ref|YP_001611092.1| Cro/CI family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159307|emb|CAN90612.1| transcriptional regulator, Cro/CI family [Sorangium cellulosum 'So ce 56'] Length = 92 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R++ +TQ+++ G + +E G+ ++++ ++ LA+ LD LL Sbjct: 13 IAANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPGVLL 72 Query: 82 K 82 + Sbjct: 73 R 73 >gi|116621181|ref|YP_823337.1| XRE family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224343|gb|ABJ83052.1| transcriptional regulator, XRE family [Candidatus Solibacter usitatus Ellin6076] Length = 82 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ +TQK + +G +I ELE GK T + ++ + HTL Sbjct: 12 IRETRKKLGITQKTLALTSGTGLRFIIELEKGKETCEVGKVLTVLHTLG 60 >gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] Length = 65 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L + + Sbjct: 1 MNRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGKSVESIFG 60 Query: 83 P 83 P Sbjct: 61 P 61 >gi|19352384|ref|NP_598142.1| TrbA protein [uncultured bacterium] gi|58616620|ref|YP_195829.1| conjugal transfer protein TrbA [Achromobacter xylosoxidans A8] gi|19070051|emb|CAD24367.1| TrbA protein [uncultured bacterium] gi|58416218|emb|CAI47813.1| transcriptional regulator [Achromobacter xylosoxidans] Length = 119 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 29/46 (63%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVM 50 >gi|329939039|ref|ZP_08288413.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus M045] gi|329301924|gb|EGG45817.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus M045] Length = 249 Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ + +Q+E+ NR+ + +S +ETG++ + ++ LA LD PL Sbjct: 5 LRGWRERRRFSQQELSNRSAVSTRHLSRVETGRARPTPEMILHLADHLDVPL 56 >gi|322386548|ref|ZP_08060175.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] gi|321269467|gb|EFX52400.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] Length = 136 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 34/56 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++IR+ +LTQ+ + R ++S I+ E+GK +I N+I ++ D L +L+K Sbjct: 8 KDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQLIK 63 >gi|255100249|ref|ZP_05329226.1| hypothetical protein CdifQCD-6_05535 [Clostridium difficile QCD-63q42] Length = 72 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 + +RKE +TQ E+ + +++++IS+LE + INI +I L+ L+ +L + Sbjct: 2 LKKLRKERGMTQNELAEKANYSRAYISDLENKRYKNINISTIIDLSLALEIDFLELCR 59 >gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] Length = 184 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 21/31 (67%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 R +RKE KLT K+I TG + +IS+LE G Sbjct: 7 RKLRKEKKLTLKDIAEATGLSIGYISQLERG 37 >gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 183 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 31/50 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 13 TNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62 >gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228] gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 179 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + L L T K Sbjct: 8 RNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63 >gi|332521196|ref|ZP_08397654.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043289|gb|EGI79486.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 491 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + IR + L+ + +G ++S+++E+E GK D + IL+ LD P Sbjct: 7 KLIFGLKLKQIRTDKDLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSERLDVPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 205 Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRK +LT K++ R+G A S +S++E + +++ + + A L+ + ++ + Sbjct: 25 LRAIRKRHELTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALEVDIAQIFR 81 >gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 279 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R + +TQ+E+ G +Q I +ETGK ++ + L PL Sbjct: 19 NNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAARLEVAQAICSVLKKPL 72 >gi|160893918|ref|ZP_02074697.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50] gi|156864296|gb|EDO57727.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50] Length = 65 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 M VNN + IR+ + Q ++ TGF IS +E GK T + + M+ Sbjct: 1 MAVVNNLKEIRESRGIIQDDLAAATGFCTRTISRIERGKCTPSAEFML 48 >gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 180 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 30/47 (63%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RN+R + +LTQ+E+ RT ++ +IS+LE +S+ +++ + L Sbjct: 8 RNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVL 54 >gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] Length = 224 Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 +RK LTQ+++ R G ++ +S +ETGK+ ++ N IL L+ P W Sbjct: 9 LRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDW 59 >gi|304439396|ref|ZP_07399308.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372178|gb|EFM25772.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 71 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N + IR E KLTQK + + G +++ IS +ETG+ +IL LD Sbjct: 9 NRLKEIRSEKKLTQKNLADMVGVSRNTISSIETGEFCPTSRLALILCIALD 59 >gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 71 Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK+A+L+Q+ + ++ G ++ IS ETG S I+++N +A + LL Sbjct: 7 NRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTIDYLL 64 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ N R +RKE LTQ+++ G +S+ ETG ++ M+ LA +T + Sbjct: 2 KVCLAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVD 61 Query: 79 KLL 81 LL Sbjct: 62 VLL 64 >gi|302347031|ref|YP_003815329.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella melaninogenica ATCC 25845] gi|302151120|gb|ADK97381.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella melaninogenica ATCC 25845] Length = 69 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 26/41 (63%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + +RKE LTQ+++ + G ++ E+E GK+T+ +D + Sbjct: 10 LKQLRKEYHLTQEDMAFKAGVGLRFVREMEQGKATLRMDKV 50 >gi|119509218|ref|ZP_01628368.1| transcriptional regulator [Nodularia spumigena CCY9414] gi|119466060|gb|EAW46947.1| transcriptional regulator [Nodularia spumigena CCY9414] Length = 538 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK +L+Q+E+ TG +QSWI ++E G+ + ++ +L L+ Sbjct: 487 RKNLQLSQRELAKLTGKSQSWIRDVENGRLKVKAEDQALLRKVLN 531 >gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 180 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 30/47 (63%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RN+R + +LTQ+E+ RT ++ +IS+LE +S+ +++ + L Sbjct: 8 RNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVL 54 >gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 169 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|149925664|ref|ZP_01913928.1| transcriptional regulator, XRE family protein [Limnobacter sp. MED105] gi|149825781|gb|EDM84989.1| transcriptional regulator, XRE family protein [Limnobacter sp. MED105] Length = 93 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R+E LTQK++ R G Q +S LE +I+++ + + L L+ P Sbjct: 15 IRTRRRELGLTQKQLGERLGIDQRTVSSLEKNPGSISVNRLFAVLDALQVSLYSSTDP 72 >gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 180 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 30/47 (63%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RN+R + +LTQ+E+ RT ++ +IS+LE +S+ +++ + L Sbjct: 8 RNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVL 54 >gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 107 Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK L+Q+E+ + ++ IS+ ETGKS D +I+L+ D L LLK Sbjct: 11 RKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDTLLK 63 >gi|313905625|ref|ZP_07838987.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469572|gb|EFR64912.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 506 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + RKE KL+Q+E+ + TG +S +S+LE+ +I + L+ LD Sbjct: 8 LLANTVVSKRKEKKLSQQELADATGINRSMLSKLESRDYIPSIPQLEALSEVLD 61 >gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R IR+ +TQ+++ +G + +I E+E G+ ++ ++ LA PL +L Sbjct: 7 LFGKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLAEL 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|282866678|ref|ZP_06275719.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558464|gb|EFB64025.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 87 Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R E T E+ R+G A+ + +LE G++ + LAH D P+ +LL Sbjct: 20 LRNERGWTFDELAGRSGLARRTLIDLEHGRAAGTVTTWHALAHAFDVPIEQLLG 73 >gi|290959281|ref|YP_003490463.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260648807|emb|CBG71921.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 432 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R + +QK++ G+ QS +S LE+G+ T ++ + +A LD P +L Sbjct: 19 RQARALQRRSQKDVAAALGYHQSKVSRLESGRGTEDVRTLREVAQVLDIPPHRL 72 >gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 179 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + L L T K Sbjct: 8 RNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63 >gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L T + Sbjct: 1 MNKIAELRKEKLISQEKLAAKVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSV 55 >gi|195977160|ref|YP_002122404.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973865|gb|ACG61391.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 121 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F + R E +L+Q + + ++ IS+ E G +T++++N++ LA L+ L Sbjct: 5 FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTL 60 >gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 131 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 25/34 (73%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RK+ LTQK++ + G +QS +S++ETG+ I+I Sbjct: 43 RKKHNLTQKDLAKKLGISQSMVSKIETGEKNISI 76 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 30/47 (63%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +TQ+++ +GF+ S IS ETG++ +I+N+I L+ L+ + L Sbjct: 19 ITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVGIDYFL 65 >gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp. subtilis str. 168] gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis BSn5] gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yqaE gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis] gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis] gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis BSn5] Length = 116 Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + RK+ KLTQ+ + ++ G + + E G + +I +++ LD L L Sbjct: 1 MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D+++R+R R +R + +E+ R +QS +S +E G + +D ++ LA Sbjct: 18 DSLVRKR------IRALRVAQGWSLEELAARGRLSQSTLSRIENGHRRLALDQLVTLARA 71 Query: 73 LDTPLWKLLK 82 LDT L +L++ Sbjct: 72 LDTSLDQLVE 81 >gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] Length = 181 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 30/40 (75%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + +RKE KLT K+I ++T + S++S++E KS+I ++++ Sbjct: 10 KRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESL 49 >gi|163942112|ref|YP_001646996.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013578|ref|ZP_04170711.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|163864309|gb|ABY45368.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228747738|gb|EEL97608.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 194 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ +T +I TG ++ ++S++E K++ +I + ++A+ L+ PL LL Sbjct: 20 IREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 75 >gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 171 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R+E +TQ E+ + + IS ETGK+ ++DN++ +A L L K Sbjct: 1 MTFAQIIKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDK 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229169105|ref|ZP_04296820.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228614333|gb|EEK71443.1| Transcriptional regulator, MerR [Bacillus cereus AH621] Length = 181 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ +T +I TG ++ ++S++E K++ +I + ++A+ L+ PL LL Sbjct: 7 IREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62 >gi|148998894|ref|ZP_01826330.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|168576210|ref|ZP_02722104.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194397548|ref|YP_002037696.1| hypothetical protein SPG_0986 [Streptococcus pneumoniae G54] gi|225856709|ref|YP_002738220.1| hypothetical protein SPP_1071 [Streptococcus pneumoniae P1031] gi|307067756|ref|YP_003876722.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755321|gb|EDK62372.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|183577909|gb|EDT98437.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357215|gb|ACF55663.1| conserved domain protein [Streptococcus pneumoniae G54] gi|225725852|gb|ACO21704.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|306409293|gb|ADM84720.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|332200556|gb|EGJ14628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 73 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQK+I F S +++E G+ T+ D ++ L++ D LL Sbjct: 6 RDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLL 60 >gi|153954623|ref|YP_001395388.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855101|ref|YP_002472223.1| hypothetical protein CKR_1758 [Clostridium kluyveri NBRC 12016] gi|146347481|gb|EDK34017.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568825|dbj|BAH06809.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 171 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+E +TQ+E+ + + IS +ETG+ + DN+ I+ LD P Sbjct: 10 REEKGMTQQELGQMSFLSDKTISAIETGRRNLTKDNLRIICKELDNPF 57 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL-WKLL 81 RKE +T ++ + G +Q +S E G + IN+ +++ +A L+TP+ W L Sbjct: 18 RKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASILETPINWFFL 70 >gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] Length = 179 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L Sbjct: 8 RRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNL 58 >gi|254511384|ref|ZP_05123451.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535095|gb|EEE38083.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 196 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R++ L+Q+ + R G QS IS++E + ++ +AH LD L Sbjct: 12 LRKAREQKGLSQRALSARAGVPQSHISKIENNTVDLRTSSLTAIAHALDLEL 63 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 14/47 (29%), Positives = 29/47 (61%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 LTQ+ I ++ G +S +ETG +++++ ++ +A+TL + LL Sbjct: 21 LTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLTVSVNDLL 67 >gi|329936105|ref|ZP_08285904.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329304423|gb|EGG48302.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 87 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R E T E+ + +G A+ + +LE G++T ++ LAHT D P+ L Sbjct: 20 LRAERGWTFDELADHSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIEYFLG 73 >gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 201 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + EP S+A+L +R+ R R + T ++ TG A+S +S++E G + D Sbjct: 4 QSEPSSSEALLGQRI------RAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDA 57 Query: 66 MIILAHTLDTPLWKLLKP 83 +I LA L + +L +P Sbjct: 58 LIKLATGLQIDISELFEP 75 >gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 67 Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH----TLDT 75 M+ N+ + R A +QKE+ ++TG + +S +E G ++ + L H TLDT Sbjct: 1 MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDT 60 Query: 76 PLW 78 W Sbjct: 61 VFW 63 >gi|229062058|ref|ZP_04199383.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228717210|gb|EEL68885.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ +T +I TG ++ ++S++E K++ +I + ++A+ L+ PL LL Sbjct: 7 IREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62 >gi|218780458|ref|YP_002431776.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761842|gb|ACL04308.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 209 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +TQ ++ +G +++ I++LE G+ + +I L+ +LD+ W LL Sbjct: 13 LAKNIVVARSALGITQGDLAKDSGISRATIAQLEAGEGDPKLSTLISLSKSLDSTHWHLL 72 >gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] Length = 134 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 27/49 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 NN R +RK+ LTQ + N ++ S ET K T ++D+++ LA Sbjct: 6 LANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLA 54 >gi|153950714|ref|YP_001399331.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|152962209|gb|ABS49670.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] Length = 135 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R F + +RK+ TQKE+ R G S ++ E+G D +I LA L T + Sbjct: 14 QRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI 73 Query: 78 WKLL 81 LL Sbjct: 74 DYLL 77 >gi|325002595|ref|ZP_08123707.1| helix-turn-helix domain-containing protein [Pseudonocardia sp. P1] Length = 225 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 26/41 (63%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 R +R+ A+L+Q+E+ RTG A+S I +E+ ++D + Sbjct: 21 VRAVRRRAELSQRELAERTGLARSTIGRIESRSLAPSLDTL 61 >gi|270290145|ref|ZP_06196371.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|304385594|ref|ZP_07367938.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|270281682|gb|EFA27514.1| conserved hypothetical protein [Pediococcus acidilactici 7_4] gi|304328098|gb|EFL95320.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 91 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +TQKE+ R G AQS I+++E+ ST +++ + AH L + LKP Sbjct: 38 ITQKELGKRIGMAQSRIAKIESLDSTPSLETLNRYAHGLGLEIKLTLKP 86 >gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 218 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ E L AI RE R+ R++ +T ++ N TG + +S++E G ++ ++ Sbjct: 23 REGSEKVLEVAIGRE-------VRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSL 75 Query: 64 DNMIILAHTLDTPLWKLLK 82 + +LA+ L P+ + Sbjct: 76 TTLQLLANALSVPITSFFR 94 >gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium] gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 122 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 29/47 (61%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 TQ+ + +R G + +S +ETG S++++ ++ +A+ L + +LL Sbjct: 21 FTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLSVSVDELL 67 >gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL J1-175] gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816] gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220] gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 169 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|330502985|ref|YP_004379854.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917271|gb|AEB58102.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 190 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83 ++RK K+T E+ R G + ++S++E G S + ++ +A LD P + L KP Sbjct: 21 DLRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAIAEALDVPTTYFYSLPKP 79 >gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 96 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E L+Q++ F ++++S+LE + I+ID + LA L + +LL+ Sbjct: 30 NLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTNISIDGLERLAEALGVDITELLQ 87 >gi|16081273|ref|NP_393584.1| hypothetical protein Ta0106 [Thermoplasma acidophilum DSM 1728] gi|10639252|emb|CAC11254.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 194 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 E M + R +RK ++QK++ TG +QS+I+ LE G TIN Sbjct: 2 EMMPNIEELRKMRKNLGISQKDLAKVTGVSQSYIARLEKG--TIN 44 >gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] Length = 94 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/28 (57%), Positives = 19/28 (67%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57 RK A LTQ E+ +TG +QS IS LE G Sbjct: 38 RKRAGLTQAELSEKTGISQSDISRLENG 65 >gi|261881030|ref|ZP_06007457.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270332210|gb|EFA42996.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 101 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57 RKEAK+TQ E+ + G +S+IS++E G Sbjct: 47 RKEAKMTQTELAEKAGTTKSYISKIENG 74 >gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] Length = 169 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e] gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland 1988] gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL R2-561] gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S] gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161] gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28] gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e] gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 169 Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL F2-515] Length = 163 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] Length = 169 Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 345 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKEA +TQ+E+ NR G +++ E S +I+ + +A LD L LL Sbjct: 8 KKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLL 62 >gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 67 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH----TLDT 75 M+ N+ + R A +QKE+ ++TG + +S +E G ++ + L H TLDT Sbjct: 1 MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDT 60 Query: 76 PLW 78 W Sbjct: 61 VFW 63 >gi|197123733|ref|YP_002135684.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173582|gb|ACG74555.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 733 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + + +R++AK+TQK++ +R G QS +S E IN Sbjct: 2 IPDLKKLREQAKMTQKDLADRIGIDQSQVSRYEADPDGIN 41 >gi|51597909|ref|YP_072100.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108809407|ref|YP_653323.1| putative transcriptional regulator [Yersinia pestis Antiqua] gi|108813719|ref|YP_649486.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145597534|ref|YP_001161610.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|153997450|ref|ZP_02022550.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165927582|ref|ZP_02223414.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937413|ref|ZP_02225976.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012119|ref|ZP_02233017.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214594|ref|ZP_02240629.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420515|ref|ZP_02312268.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425474|ref|ZP_02317227.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466471|ref|ZP_02331175.1| putative transcriptional regulatory protein [Yersinia pestis FV-1] gi|218930622|ref|YP_002348497.1| putative transcriptional regulator [Yersinia pestis CO92] gi|229836747|ref|ZP_04456912.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229839352|ref|ZP_04459511.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899916|ref|ZP_04515057.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904228|ref|ZP_04519339.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270488666|ref|ZP_06205740.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294505211|ref|YP_003569273.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|51591191|emb|CAH22856.1| putative transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777367|gb|ABG19886.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781320|gb|ABG15378.1| putative transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349233|emb|CAL22200.1| putative transcriptional regulatory protein [Yersinia pestis CO92] gi|145209230|gb|ABP38637.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289087|gb|EDM39167.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165914518|gb|EDR33132.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920476|gb|EDR37753.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988959|gb|EDR41260.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204216|gb|EDR48696.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961321|gb|EDR57342.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055488|gb|EDR65281.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678346|gb|EEO74451.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229687408|gb|EEO79483.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695718|gb|EEO85765.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705690|gb|EEO91699.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262363273|gb|ACY59994.1| putative transcriptional regulatory protein [Yersinia pestis D106004] gi|262367348|gb|ACY63905.1| putative transcriptional regulatory protein [Yersinia pestis D182038] gi|270337170|gb|EFA47947.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294355670|gb|ADE66011.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|320017231|gb|ADW00803.1| putative transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 135 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R F + +RK+ TQKE+ R G S ++ E+G D +I LA L T + Sbjct: 14 QRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI 73 Query: 78 WKLL 81 LL Sbjct: 74 DYLL 77 >gi|325475638|gb|EGC78814.1| DNA-binding protein [Treponema denticola F0402] Length = 65 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 22/37 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK A LTQ++ R G ++ ELE GK T+ +D + Sbjct: 12 RKSAGLTQEDFAIRAGLGLRFVRELEQGKETVRMDKV 48 >gi|297204945|ref|ZP_06922342.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297148801|gb|EDY55759.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 104 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R E T E+ + +G A+ + +LE G++T ++ LAHT D P+ L Sbjct: 37 LRAERGWTFDELADHSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIEHFLS 90 >gi|282879967|ref|ZP_06288689.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] gi|281306081|gb|EFA98119.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] Length = 101 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57 RKEAK+TQ E+ + G +S+IS++E G Sbjct: 47 RKEAKMTQTELAEKAGTTKSYISKIENG 74 >gi|329577950|gb|EGG59368.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 365 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 5 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42 >gi|282878487|ref|ZP_06287271.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] gi|281299393|gb|EFA91778.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] Length = 101 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57 RKEAK+TQ E+ + G +S+IS++E G Sbjct: 47 RKEAKMTQTELAEKAGTTKSYISKIENG 74 >gi|111038055|ref|YP_709142.1| conjugal transfer protein TrbA [IncP-1 plasmid pKJK5] gi|110781060|emb|CAK02644.1| transcriptional regulator protein [IncP-1 plasmid pKJK5] Length = 124 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++IF N I E +T+ E+ R+G + S++S+L TGK+ ++ M +A Sbjct: 3 KVIFFTNVLRILDERGMTKNELSERSGVSISFLSDLTTGKANPSLKVMEAIA 54 >gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 244 Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ + L+QK++ G Q S +E G+++I ++++ L+ P ++LK Sbjct: 7 LKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVPTDRILK 63 >gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] Length = 302 Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 38/62 (61%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +++R++AK++Q+++ + ++ +++ ETG +I+N+ +A D + +L Sbjct: 1 MFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDEL 60 Query: 81 LK 82 L+ Sbjct: 61 LE 62 >gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99] Length = 169 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239] gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239] Length = 141 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M F N + +RKE ++Q+++ ++ IS+ E+GK+ +I+N+I+L L Sbjct: 1 MGFNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSL 58 >gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] Length = 169 Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 197 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+ L+ E+ R G A+S +S+LETG +++ + LA LD + +L+ Sbjct: 26 SIRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVSQLI 82 >gi|166366162|ref|YP_001658435.1| hypothetical protein MAE_34210 [Microcystis aeruginosa NIES-843] gi|166088535|dbj|BAG03243.1| hypothetical protein MAE_34210 [Microcystis aeruginosa NIES-843] Length = 113 Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 29/46 (63%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++ + IRK ++QKE+ R +QS ++++E+G S++++D Sbjct: 36 KLALGRKLKEIRKSQNISQKELAKRMESSQSRVAKIESGDSSVSLD 81 >gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 192 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 30/51 (58%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R E K T K + +TG + ++S+ E G ++I ID++ +A L+ L Sbjct: 12 KELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVEL 62 >gi|89096264|ref|ZP_01169157.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89089118|gb|EAR68226.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 73 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R +A+LTQ+E+ +R G + +S +E GK ++ + + + + + L +L Sbjct: 8 NNVKQARLQAELTQQELADRVGITRQTVSLIEKGKYNPSLKLCLQICYAVQSKLDELF 65 >gi|315169296|gb|EFU13313.1| helix-turn-helix protein [Enterococcus faecalis TX1341] Length = 445 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 23 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 60 >gi|153833004|ref|ZP_01985671.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01] gi|156977184|ref|YP_001448090.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116] gi|269963350|ref|ZP_06177680.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3] gi|148870725|gb|EDL69631.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01] gi|156528778|gb|ABU73863.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116] gi|269831924|gb|EEZ86053.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3] Length = 207 Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 ++IR + +T +E RTG A+S +S++E + + M LAH L + +L +P Sbjct: 33 KDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLFEP 89 >gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 184 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 13/52 (25%), Positives = 32/52 (61%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++ K+T +E+ + G S +S++E G+ +I+ + +++ L+ P++K Sbjct: 14 REQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMFKFF 65 >gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 69 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N ++IRKE L+Q ++ N G +++ IS +ETG+ +ILA L+ Sbjct: 9 NRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIALE 59 >gi|290956648|ref|YP_003487830.1| hypothetical protein SCAB_21521 [Streptomyces scabiei 87.22] gi|260646174|emb|CBG69267.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 454 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTP 76 R IR+ AKL Q ++ + TG +Q ++S LE G + ++D + + ++TP Sbjct: 25 RLIRERAKLRQDDMADLTGLSQGFVSMLEAGTRRLTSLDKVAMFLRGIETP 75 >gi|297567303|ref|YP_003686275.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851752|gb|ADH64767.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 130 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R E K++ ++G + ++S+LE G++ +++ + LA T + Sbjct: 1 MTLAERLRELRSERGWRLKDLSEQSGLSVPYLSDLERGRTNPSLETLNTLARTYAMSVQD 60 Query: 80 LLKP 83 LL+P Sbjct: 61 LLEP 64 >gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905] gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905] Length = 181 Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK LT +E+ G S +S++E G + +I + +LA TLD P + Sbjct: 14 RKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPTFTFF 65 >gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1] Length = 290 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A+L R+ + + R +++K++ + G ++ ++++LE G++ ++++ + +LA + Sbjct: 8 AVLSRRL--GDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAM 65 Query: 74 DTPLWKLLK 82 DT + L++ Sbjct: 66 DTAITDLIE 74 >gi|222084616|ref|YP_002543145.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221722064|gb|ACM25220.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 265 Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +Q ++ TG +Q IS +E+G+ST N++ LA LD PL Sbjct: 19 SQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLAEVLDVPL 60 >gi|312901705|ref|ZP_07760974.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311291174|gb|EFQ69730.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315148196|gb|EFT92212.1| helix-turn-helix protein [Enterococcus faecalis TX4244] Length = 427 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 5 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42 >gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 115 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N+RKEA LTQ ++ + G +Q + E G DN++ L+ L + Sbjct: 1 MEFSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|29377017|ref|NP_816171.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344483|gb|AAO82241.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 427 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 5 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42 >gi|27379415|ref|NP_770944.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352566|dbj|BAC49569.1| blr4304 [Bradyrhizobium japonicum USDA 110] Length = 226 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R+ LT K++ RTG A S +S++E G ++ D ++ L L + +L P Sbjct: 18 LKAARQARGLTLKQVAERTGMALSTLSKVENGLMSLTYDKLLQLTSGLKMEIAELFNP 75 >gi|315036199|gb|EFT48131.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 438 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 16 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 53 >gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 197 Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R+E KL+ E+ R+G ++ +S++E G ID++ +A L + +L Sbjct: 7 LVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADALHLTMRRL 66 Query: 81 L 81 + Sbjct: 67 V 67 >gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5] gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5] Length = 272 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RKE +LTQ+ + ++ G +S+ ETG++ +I + L+ LD + Sbjct: 2 RDMLAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61 Query: 79 KLL 81 KL Sbjct: 62 KLF 64 >gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 180 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 31/49 (63%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +RK+ KLTQK + TG ++S++S++E + + D + LA++L L Sbjct: 10 LRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALANSLKLDL 58 >gi|186680864|ref|YP_001864060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463316|gb|ACC79117.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc punctiforme PCC 73102] Length = 531 Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 28/45 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK L+Q+E+ TG +QSWI ++E G+ +++ ++L L+ Sbjct: 483 RKNLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQLLLRKVLN 527 >gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] Length = 100 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 16/44 (36%), Positives = 26/44 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RK+A +TQ E+ + G +S+IS +ETGK+ + +A L Sbjct: 47 RKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASAL 90 >gi|153954232|ref|YP_001394997.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854837|ref|YP_002471959.1| hypothetical protein CKR_1494 [Clostridium kluyveri NBRC 12016] gi|146347113|gb|EDK33649.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568561|dbj|BAH06545.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 226 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 34/55 (61%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R + KE L+ +++ + +G + IS + GK + N++++ IL+ L+ P+ KLL Sbjct: 15 RTLLKENSLSMRKLSSISGIDTATISRIVNGKQSANMNHLRILSKYLNVPIKKLL 69 >gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 222 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ KLT +++ + G + S++S++E G+S ++ + LA L T + LL Sbjct: 7 LKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSYLL 62 >gi|315576305|gb|EFU88496.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582797|gb|EFU94988.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 427 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 5 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42 >gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 69 Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK+++L+Q+ + ++ G ++ IS ETG S I+++N +A + LL Sbjct: 7 NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLL 64 >gi|329848110|ref|ZP_08263138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843173|gb|EGF92742.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 261 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F + ++ R +++Q ++ G +Q +S +ETG+S + D +I LA LD PL Sbjct: 5 FGEHLKHWRARRRISQLDLALDAGISQKHLSFVETGRSVPSRDMVIRLAEVLDMPL 60 >gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 161 Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 E ++ IL+ER N +RK+ +TQ+E+ N G + I+++E G ++ID Sbjct: 5 EGKCTEKILKERERIGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSID 61 >gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 151 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +LRE N R IR E TQ ++ G +++ ++E G+S+I ++ + +L T Sbjct: 47 EELLRE---MGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSIALEKLALLNET 103 Query: 73 LDTPLWKLL 81 +D L L+ Sbjct: 104 MDIDLNYLI 112 >gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] Length = 115 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +R+E +TQ + G AQ IS E G+ ++ +I L+ LD + Sbjct: 6 NRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASM 59 >gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] Length = 65 Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L T + Sbjct: 1 MNKIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSV 55 >gi|288800505|ref|ZP_06405963.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 299 str. F0039] gi|288332718|gb|EFC71198.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 299 str. F0039] Length = 102 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 14/28 (50%), Positives = 21/28 (75%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57 RK+AK+TQ E+ R G +S+IS++E G Sbjct: 47 RKDAKVTQSELAQRVGTTKSYISKIENG 74 >gi|266622898|ref|ZP_06115833.1| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288865341|gb|EFC97639.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 110 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RN RK LT E+ + G A + ++E G ++ID ++ L TL+ Sbjct: 13 RNRRKALGLTSAEVAEKIGRADHYYGDIERGTCGMSIDTLVELTRTLE 60 >gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/67 (23%), Positives = 37/67 (55%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +++ ++ + R+E+ LTQKE+ ++ ++ +S E GKS +++ ++ LA+ Sbjct: 46 VMKRKIAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYG 105 Query: 75 TPLWKLL 81 L L+ Sbjct: 106 VSLDYLM 112 >gi|312889943|ref|ZP_07749487.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297475|gb|EFQ74600.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 67 Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 24/37 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK KLTQ+E+ ++ G + E+E GK+T+ +D + Sbjct: 10 RKAFKLTQQELADKAGVGLRVVREMEQGKATLRMDKV 46 >gi|256958187|ref|ZP_05562358.1| transcriptional regulator [Enterococcus faecalis DS5] gi|256948683|gb|EEU65315.1| transcriptional regulator [Enterococcus faecalis DS5] Length = 427 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 26/38 (68%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ Sbjct: 5 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42 >gi|330826831|ref|YP_004390134.1| y4mF family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329312203|gb|AEB86618.1| transcriptional regulator, y4mF family [Alicycliphilus denitrificans K601] Length = 81 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 15/78 (19%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP HL D + R+ RK LTQ ++ G +I +LE GK T Sbjct: 1 MPTLIETPEHLGDVV-----------RHTRKALSLTQPQLALAAGVGVRFIVDLEAGKPT 49 Query: 61 INIDNMI----ILAHTLD 74 + ++N++ +L TL Sbjct: 50 VRLENILRVLQVLGATLS 67 >gi|160887942|ref|ZP_02068945.1| hypothetical protein BACUNI_00346 [Bacteroides uniformis ATCC 8492] gi|270294779|ref|ZP_06200980.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317477790|ref|ZP_07936981.1| y4mF family transcriptional regulator [Bacteroides sp. 4_1_36] gi|156862628|gb|EDO56059.1| hypothetical protein BACUNI_00346 [Bacteroides uniformis ATCC 8492] gi|270274026|gb|EFA19887.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316906048|gb|EFV27811.1| y4mF family transcriptional regulator [Bacteroides sp. 4_1_36] Length = 74 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 E+ + +RK+ LTQ E+ ++G ++ ELE GK T+ +D + Sbjct: 5 EQTTLSKYVKAMRKQYNLTQVELSEKSGVGLRFVRELEQGKQTLRLDKV 53 >gi|126740274|ref|ZP_01755963.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718729|gb|EBA15442.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 231 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 9 PHLSDAILRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 PH + RE+++ V R R++ ++T E+ TG + +S++E G ++ ++ Sbjct: 31 PHSLRSSDREKVLEVAIGREVRAFRRQKEITVAELAQITGLSIGMLSKIENGNTSPSLTT 90 Query: 66 MIILAHTLDTPL 77 + ILA+ L PL Sbjct: 91 LQILANALSVPL 102 >gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 159 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N + +RK +LTQ E+ N G +++ +S E G S I+ + + + TL+ Sbjct: 1 MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|307710038|ref|ZP_07646483.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619223|gb|EFN98354.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 70 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +TQK++ + G +++ + E G+ D M I+A L+ + ++ Sbjct: 7 QLRKEKGITQKQLARKLGISETAYRQKERGQRAFKSDEMFIIADVLEKDIGEIF 60 >gi|283795792|ref|ZP_06344945.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076424|gb|EFE13788.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 66 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 M VNN + IR++ + Q E+ TG+ I +E G+ST + + M+ Sbjct: 1 MAVVNNIKEIREQRGIYQDELAEATGYCTKTIGRIERGESTPSAEFML 48 >gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf] gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf] gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 220 Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 22/28 (78%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTIN 62 LTQK++ + G A+S+I+E+E+G+ IN Sbjct: 17 LTQKQLAKKLGVAESFINEVESGRKIIN 44 >gi|269976764|ref|ZP_06183739.1| putative transcriptional regulator [Mobiluncus mulieris 28-1] gi|269934961|gb|EEZ91520.1| putative transcriptional regulator [Mobiluncus mulieris 28-1] Length = 69 Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +RKE KL+Q+E+ G + I+ +ETGK ++ +AH D Sbjct: 7 QLRKERKLSQEELGTAVGVTRQTITSIETGKYVASLPLAYKIAHYFD 53 >gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 184 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ R +RK LT K + G + W+S++E G++T ++ ++ +LA L L Sbjct: 7 DDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTL 60 >gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] Length = 490 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RKE KLTQ ++ TG + IS LE+ T +ID + +A L+ Sbjct: 17 RKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVLN 61 >gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] Length = 294 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + IRK+ L+Q++ + G ++ I++ ET +IDN+I + D + + Sbjct: 1 MKFSQKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDE 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVLL 61 >gi|22124180|ref|NP_667603.1| transcriptional repressor [Yersinia pestis KIM 10] gi|45443665|ref|NP_995204.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|21956939|gb|AAM83854.1|AE013626_1 transcriptional repressor [Yersinia pestis KIM 10] gi|45438535|gb|AAS64081.1| putative transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] Length = 162 Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R F + +RK+ TQKE+ R G S ++ E+G D +I LA L T + Sbjct: 41 QRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI 100 Query: 78 WKLL 81 LL Sbjct: 101 DYLL 104 >gi|229194008|ref|ZP_04320903.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876] gi|228589445|gb|EEK47369.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876] Length = 65 Score = 33.5 bits (75), Expect = 8.6, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L T + Sbjct: 1 MNKIAELRKEKLISQEKLAAQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSV 55 >gi|227872629|ref|ZP_03990961.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841516|gb|EEJ51814.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 96 Score = 33.5 bits (75), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +TQK++ N+TG QS IS+LE G +I + LA +D L Sbjct: 42 MTQKDLSNKTGINQSEISKLENGTRNPSIKLLQRLAEGMDMVL 84 >gi|255101457|ref|ZP_05330434.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255307330|ref|ZP_05351501.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 66 Score = 33.5 bits (75), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R+ +LTQ+++ + G + I LE GK ++ I ++ +DTP+ +L Sbjct: 4 FTCNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 468 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R+E LTQ+ + +R G + S+++ +E + + +I L HTL L Sbjct: 3 RPLIGRTIRRLRQEQGLTQQALASRLGISASYLNLIEHDQRGVTAALLIKLGHTLQVDLA 62 Query: 79 KL 80 L Sbjct: 63 AL 64 >gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 32/53 (60%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E K++Q+E+ + +QS++ + E+GK I + ++ LA+ + + LL Sbjct: 11 LRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLL 63 >gi|240141978|ref|YP_002966488.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|240011922|gb|ACS43147.1| Putative transcriptional regulator [Methylobacterium extorquens AM1] Length = 101 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 20/38 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R R E TQ ++ G Q WISE+E GK+T I Sbjct: 13 IRAKRSERSWTQGDLARHVGTTQRWISEVENGKATAEI 50 >gi|222150597|ref|YP_002559750.1| hypothetical protein MCCL_0347 [Macrococcus caseolyticus JCSC5402] gi|222119719|dbj|BAH17054.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 167 Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R IRKE +LT K++ T + ++S+LET KS + + ++A L+ Sbjct: 6 NIRKIRKERELTLKQVAELTDLSIPFLSQLETNKSDATMATIRLIADALEV 56 >gi|148252780|ref|YP_001237365.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404953|gb|ABQ33459.1| Putative HTH-type transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 75 Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R IR++ ++TQ+++ +++ +E GK ++ M +A L PL Sbjct: 11 RAVLGRNVRKIRQQRRMTQEKLAFEAEIDLTYMGGIERGKRNPSLLVMARIAEALSVPLT 70 Query: 79 KLL 81 KLL Sbjct: 71 KLL 73 >gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 179 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 32/49 (65%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N+R++ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T Sbjct: 8 KNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGT 56 >gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] Length = 220 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 22/28 (78%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTIN 62 LTQK++ + G A+S+I+E+E+G+ IN Sbjct: 17 LTQKQLAKKLGVAESFINEVESGRKIIN 44 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 29/52 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++R L+ ++ +TG QS IS+LE G I+ D + +A +D P+ Sbjct: 7 LKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPI 58 >gi|75910458|ref|YP_324754.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704183|gb|ABA23859.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 531 Score = 33.5 bits (75), Expect = 9.0, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 28/44 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 RK+ L+Q+++ TG +QSWI ++E G+ +++ ++L L Sbjct: 485 RKKLGLSQRDLAKLTGKSQSWIRDIENGRFQAKLEDQMVLRKAL 528 >gi|292670745|ref|ZP_06604171.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292647366|gb|EFF65338.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 128 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82 RKE LTQKE+ + + IS E G +TIN D++++L+ P+ +L+K Sbjct: 11 RKENGLTQKELGFKINKSPQVISNWERGYTTTINQDDIVVLSGVFGIPVEELIK 64 >gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 114 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +E +TQ E TG AQS IS+ + K+ + D +++++ LD ++ Sbjct: 1 MIISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKRKKTNPSADKIMVISDVLDVSPFE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLQ 63 >gi|293402548|ref|ZP_06646683.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304062|gb|EFE45316.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 100 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE +TQ++I R G +S+ ETGKS + M+ L L + +LL Sbjct: 12 DCRKELNMTQRQIAERLGITNRAVSKWETGKSMPDASLMLELCEALHISINELL 65 >gi|91204486|emb|CAJ70986.1| similar to immunity repressor protein [Candidatus Kuenenia stuttgartiensis] Length = 151 Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 24/38 (63%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 I +N R IR+ +TQ+E+ R+G Q +I+ LE GK Sbjct: 26 IVGSNVRMIRERLGITQEELALRSGLTQGYINFLENGK 63 >gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 200 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ E+ R G A+S +S+LETG +++ + LA LD + +L+ Sbjct: 30 IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVSQLI 85 >gi|42526012|ref|NP_971110.1| DNA-binding protein, putative [Treponema denticola ATCC 35405] gi|41816062|gb|AAS10991.1| DNA-binding protein, putative [Treponema denticola ATCC 35405] Length = 72 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/37 (40%), Positives = 22/37 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 RK A LTQ++ R G ++ ELE GK T+ +D + Sbjct: 12 RKSAGLTQEDFAIRAGLGLRFVRELEQGKETVRMDKV 48 >gi|37527293|ref|NP_930637.1| hypothetical protein plu3419 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786727|emb|CAE15793.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 97 Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + +N R R E +TQK + QS+I+++E G+ +++ + +AH L Sbjct: 21 EYQLVINTLRKARIEKGITQKSLAQALDRPQSFIAKIENGERRLDVVEFVHIAHLLSV 78 >gi|328947050|ref|YP_004364387.1| hypothetical protein Tresu_0124 [Treponema succinifaciens DSM 2489] gi|328447374|gb|AEB13090.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 106 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF+ N + RK+A LTQ+++ + S+I ++E + + + + +A L+ P+ Sbjct: 4 RRIFIQNMKYYRKQAGLTQEKLAEAIDMSTSYIGDMEARERFPSAETIDKIAAALEIPVS 63 Query: 79 KLL 81 L Sbjct: 64 LLF 66 >gi|300691138|ref|YP_003752133.1| HTH-type transcriptional regulator [Ralstonia solanacearum PSI07] gi|299078198|emb|CBJ50841.1| putative HTH-type transcriptional regulator [Ralstonia solanacearum PSI07] Length = 93 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R +R +Q+ + G ++++S +E + +++ N+ +A L+ W Sbjct: 18 RGVLAFNVRLLRVGRGWSQERLALECGLDRTYVSAVERSRWNVSLSNIEAIAKALEVQPW 77 Query: 79 KLLKP 83 LLKP Sbjct: 78 ALLKP 82 >gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 272 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RKE +LTQ+ + ++ G +S+ ETG++ +I + L+ LD + Sbjct: 2 RDMLAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61 Query: 79 KLL 81 KL Sbjct: 62 KLF 64 >gi|86133152|ref|ZP_01051734.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85820015|gb|EAQ41162.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 494 Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+IF + IR E L+ + +G ++S+++E+E GK D +++L+ +L+ Sbjct: 9 RLIFGLKLKQIRTERNLSLFGLAKLSGLSKSYLNEIEKGKKYPKTDKILLLSESLEV 65 >gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 131 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R E L+Q++I N+ ++ IS E+G +T ++ N++ LA L+T L Sbjct: 7 TQLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSL 60 >gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] Length = 260 Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RKE LTQK++ + + +S+ E G S N+ +I +A LD + +LL+ Sbjct: 23 LRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLR 76 >gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] Length = 179 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 32/51 (62%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++R E +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L Sbjct: 8 KSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNL 58 >gi|152851|gb|AAA26568.1| C protein [Serratia marcescens] Length = 84 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R+ R L+Q+++ +G +++I +E + + + +IIL L+T + KL Sbjct: 14 ILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILRKALNTSVPKL 73 Query: 81 L 81 L Sbjct: 74 L 74 >gi|307132763|ref|YP_003884779.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937] gi|306530292|gb|ADN00223.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937] Length = 156 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 D L+ A + R + RK LTQK++ +TG ++ +SE+E G+ T ++D Sbjct: 63 DGITLAAASMASRESMGKTIASTRKACGLTQKQVAEQTGINKTTLSEIENGRFTGSLD 120 >gi|289449795|ref|YP_003474502.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184342|gb|ADC90767.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 66 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 N +RK+ K+TQ+E+ N G + I+ +ETGK Sbjct: 3 NTISQLRKQHKITQEELANEVGVTRQTITSIETGK 37 >gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196] gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291] gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196] gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291] Length = 169 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 34/55 (61%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK LT +++ + G +++ +SE E+G+S + + +++LA L T + LL Sbjct: 12 RELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYLL 66 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 77 Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+A +TQ E+ + G +S+IS +ETGK+ + +A L Sbjct: 24 RKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68 >gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 104 Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 IR++ KL+Q++ G + +S E G S NI+ +I+++ P+ ++LK Sbjct: 18 IRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPVDEMLK 71 >gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] Length = 184 Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 30/52 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E K++ +++ RTG S +S++E +I+ + ++A L+ P++K Sbjct: 14 RGEKKISLRQLAERTGLTASMLSQIERNLVNPSINTLKVIAAALEIPMYKFF 65 >gi|146280153|ref|YP_001170310.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC 17025] gi|145558394|gb|ABP73005.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC 17025] Length = 82 Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R KL+QK++ TG AQS IS++E G + ++D + L L L Sbjct: 19 LRARRTARKLSQKQLGEMTGTAQSTISDIENGVVSASLDVYLRLLEALGAEL 70 >gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630] gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 169 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|158320706|ref|YP_001513213.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140905|gb|ABW19217.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 24/37 (64%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + R +AKLT+KE+ + G ++I ++E+GK +N Sbjct: 8 IKEARMKAKLTEKELAKKCGLTANYIIQIESGKRVVN 44 >gi|299537927|ref|ZP_07051215.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726655|gb|EFI67242.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 165 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 27/46 (58%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +RK K+ Q+E N+ G +QS ++ +E GK TI + + HT + Sbjct: 8 LRKTLKMNQQEFSNKIGISQSALTLMENGKRTIRDVYITQMCHTFN 53 >gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 30/47 (63%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 LTQ+ + ++ G +S +ETG S++++ ++ +A+ L+ + +LL Sbjct: 21 LTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLNVSVDELL 67 >gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +I N R +R+E KL+ E+ +G ++S ++++E G+ I + L++ + P Sbjct: 6 LIVAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKVPF 63 >gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 223 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 31/48 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 12 RQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|37524226|ref|NP_927570.1| hypothetical protein plu0206 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783649|emb|CAE12501.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 100 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R + ++ RK LTQ+++ + G + IS +E GKS N+D + A L Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAAL 88 >gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F ++IRK+ ++Q+ + + G ++ +++ ETG +I+N+I +++ + + + Sbjct: 1 MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 175 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + +RKE KL+QKEI ++ +S E G+S I + LA + LL Sbjct: 1 MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLL 59 >gi|253987632|ref|YP_003038988.1| phage n15 protein gp48 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779082|emb|CAQ82242.1| similar to protein gp48 from prophage n15 [Photorhabdus asymbiotica] Length = 99 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R + ++ RK LTQ+++ + G + IS +E GKS N+D + A L Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAAL 88 >gi|212695608|ref|ZP_03303736.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM 7454] gi|212677281|gb|EEB36888.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM 7454] Length = 68 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 29/43 (67%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 + ++++ N+ + +RKE +Q+++ + G +++ IS +ETG+ Sbjct: 1 MDDKLVLKNHLKEVRKEKDYSQQQLADEVGVSRNTISSIETGQ 43 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ LL Sbjct: 5 NIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61 >gi|160916243|ref|ZP_02078450.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991] gi|158431967|gb|EDP10256.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991] Length = 94 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 +LSD + R F N + RK+ TQ ++ G Q++ISE+E GK + + + L Sbjct: 24 NLSDMRIETR--FGRNVQMYRKQRHYTQFQLAELCGLNQNYISEIENGKRNVTLRVLNDL 81 Query: 70 AHTLDTPLWKLL 81 A L + +L+ Sbjct: 82 AEALGVEVKELV 93 >gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 221 Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK +LT + TG + +S++E G + +++ + +LA L PL +L Sbjct: 42 RELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPLMQLFS 97 Searching..................................................done Results from round 2 >gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040824|gb|ACT57620.1| transcriptional regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 83 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST Sbjct: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 INIDNMIILAHTLDTPLWKLLKP Sbjct: 61 INIDNMIILAHTLDTPLWKLLKP 83 >gi|315122539|ref|YP_004063028.1| transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495941|gb|ADR52540.1| transcriptional regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 83 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 75/83 (90%), Positives = 80/83 (96%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRR++DE HLS+ ILRERMIFVNNFRN RKEAK+TQKEIRNRTGFAQSWISELETGKST Sbjct: 1 MPRRRKDESHLSNTILRERMIFVNNFRNTRKEAKITQKEIRNRTGFAQSWISELETGKST 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 INIDNMIILAHTL+TPLWKLLKP Sbjct: 61 INIDNMIILAHTLNTPLWKLLKP 83 >gi|325917597|ref|ZP_08179796.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325536194|gb|EGD07991.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 85 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 2/85 (2%) Query: 1 MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 MP R R D + ER+IF NFR RK AKL+Q+++R+RTG +SWIS +ETGK Sbjct: 1 MPGRPRAADSHQDPKPVPVERLIFARNFRQARKAAKLSQRDVRDRTGLTRSWISNIETGK 60 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 S N+DNM +LA + PLWKLL P Sbjct: 61 SPPNLDNMAMLAKCVGVPLWKLLVP 85 >gi|325919535|ref|ZP_08181552.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549984|gb|EGD20821.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 85 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 2/85 (2%) Query: 1 MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 MP R R D + ER+IF FR RK AKL+Q+ IR+RTGF Q+WIS +ETGK Sbjct: 1 MPGRPRAADSHQDPKPVPVERLIFARKFRQARKAAKLSQRGIRDRTGFTQAWISAVETGK 60 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 S N+D+M +LA + PLWKLL P Sbjct: 61 SAPNLDSMAVLAKCVGVPLWKLLVP 85 >gi|10956712|ref|NP_061657.1| transcriptional regulator [Xylella fastidiosa 9a5c] gi|9112239|gb|AAF85570.1|AE003851_1 transcriptional regulator [Xylella fastidiosa 9a5c] Length = 86 Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats. Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 1/83 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP +++ + A+ ER+IF NFRN R AKL+Q+EI +TG Q+WIS +E G+ST Sbjct: 3 MPHKQKTVNKV-KAVEPERLIFGRNFRNARNMAKLSQREIAEKTGLTQNWISMVENGRST 61 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 I+IDNM LA ++ PLWKLL P Sbjct: 62 ISIDNMAKLAKCVNVPLWKLLIP 84 >gi|114326578|ref|YP_743737.1| XRE family transcriptional regulator [Nitrosomonas eutropha C91] gi|114309517|gb|ABI60759.1| transcriptional regulator, XRE family [Nitrosomonas eutropha C91] Length = 85 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 46/76 (60%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 + R IF NFR+ R+ A+LTQ +I TG + +IS++E GK +I++D M Sbjct: 4 SRDTEEISPEARFIFGRNFRHARRAAELTQCDITRITGVMRGYISKVECGKVSISVDKME 63 Query: 68 ILAHTLDTPLWKLLKP 83 +LA+ + PLWKLL P Sbjct: 64 VLANAVKVPLWKLLTP 79 >gi|312115518|ref|YP_004013114.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220647|gb|ADP72015.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 101 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 2 PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P+RKR P L+ ER IF N R R +A L+Q+E+ TG AQ+ ISELE Sbjct: 16 PKRKRALPVLAKKRAPDSQPEREIFARNLRKSRIDAGLSQRELAAVTGIAQAHISELENA 75 Query: 58 KSTINIDNMIILAHTLDTPLWKLLKP 83 + ID M+ LA + PL+++ +P Sbjct: 76 MHNVCIDTMVKLAQAMRKPLFQMFQP 101 >gi|312113854|ref|YP_004011450.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218983|gb|ADP70351.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 101 Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 2 PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P+RKR P L+ ER IF N R R +A L+Q+E+ TG AQ+ ISELE Sbjct: 16 PKRKRALPVLAKKRAPDSQPEREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENA 75 Query: 58 KSTINIDNMIILAHTLDTPLWKLLKP 83 + ID M+ LA + PL+++ +P Sbjct: 76 MHNVCIDTMVKLAQAVKKPLFQMFQP 101 >gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 78 Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 +D H D LR++ + + R R+ ++Q+ + + G +++I ++E G+ I+IDN Sbjct: 3 KDSKHSDDVSLRQK--YGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGERNISIDN 60 Query: 66 MIILAHTLDTPLWKLLKP 83 + LA + LW++L+P Sbjct: 61 LERLADAVGEQLWEMLRP 78 >gi|312114516|ref|YP_004012112.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219645|gb|ADP71013.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 101 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%) Query: 3 RRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +RKR P L+ ER IF N R R +A L+Q+E+ TG AQ+ ISELE Sbjct: 17 KRKRALPVLAKKRAPDSQPEREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENAM 76 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 + ID M+ LA + PL+++ +P Sbjct: 77 HNVCIDTMVKLAQAVKKPLFQMFQP 101 >gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 185 Score = 91.2 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 37 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96 Query: 79 KLLKP 83 +LL P Sbjct: 97 QLLAP 101 >gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B] gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1] Length = 185 Score = 90.8 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 37 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96 Query: 79 KLLKP 83 +LL P Sbjct: 97 QLLAP 101 >gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520] Length = 154 Score = 90.1 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 QLLAP 70 >gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 154 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R L+Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 QLLAP 70 >gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 154 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 QLLAP 70 >gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] Length = 154 Score = 89.3 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 4 RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 63 Query: 79 KLL 81 +LL Sbjct: 64 RLL 66 >gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933] gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str. TW14359] gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933] gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str. EC1212] gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str. 1125] gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str. 1044] Length = 154 Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 6 RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 RLL 68 >gi|34496512|ref|NP_900727.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34102366|gb|AAQ58732.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 87 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L R +F N R R+ ++Q+ + + G +++++SE+E G+ ++IDNM LA L Sbjct: 8 LTARAVFARNLRIARRLHDVSQEALALQAGMSRTYVSEIERGERNVSIDNMGALADALGV 67 Query: 76 PLWKLLKP 83 L L+ P Sbjct: 68 ALRDLVDP 75 >gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703] Length = 178 Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L+ W Sbjct: 30 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALNVEPW 89 Query: 79 KLL 81 + Sbjct: 90 QFF 92 >gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] Length = 166 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 18 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 77 Query: 79 KLL 81 +LL Sbjct: 78 QLL 80 >gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 153 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F + +R ++Q+ + GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RILFGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEALSVEPW 65 Query: 79 KLLK 82 +LL Sbjct: 66 QLLT 69 >gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 230 Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 39/65 (60%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R +R + L+Q+++ + G ++++SE+E GK +++DN+ LA+ L Sbjct: 5 RTLLAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQVEAA 64 Query: 79 KLLKP 83 KL+ P Sbjct: 65 KLVSP 69 >gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 152 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + +R ++Q+ +R GFA S++S +E G S ++D + +LA+ L W Sbjct: 4 RKLFGQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEPW 63 Query: 79 KLL 81 +LL Sbjct: 64 QLL 66 >gi|32442173|gb|AAP82048.1| putative mating pair formation protein [Stenotrophomonas maltophilia] Length = 98 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 43/79 (54%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++ I R F NFR R A LTQK+I + G Q ++SE+E G S I++ Sbjct: 20 KRLPASVDESEIPEMRKKFAKNFRAARIRAGLTQKDICEKAGLTQPYLSEVERGLSNISL 79 Query: 64 DNMIILAHTLDTPLWKLLK 82 DNM +LA + PLW LL+ Sbjct: 80 DNMEVLAGLVHKPLWVLLR 98 >gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dJ gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] Length = 77 Score = 86.6 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELVTP 68 >gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B] Length = 150 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA+ L W Sbjct: 2 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 61 Query: 79 KLL 81 +LL Sbjct: 62 QLL 64 >gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] Length = 154 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L+ W Sbjct: 6 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 RLL 68 >gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 72 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ++++ R+GF+Q +IS LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELVRP 68 >gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 154 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L+ W Sbjct: 6 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 RLL 68 >gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 73 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+ LTQ+++ R+GF+Q +IS LE G+ I + LA L Sbjct: 4 RRLVGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELITP 68 >gi|222087821|ref|YP_002546359.1| hypothetical protein Arad_4804 [Agrobacterium radiobacter K84] gi|221725269|gb|ACM28425.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 72 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+KP Sbjct: 64 ELVKP 68 >gi|167855653|ref|ZP_02478411.1| probable transcriptional regulator [Haemophilus parasuis 29755] gi|219871715|ref|YP_002476090.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167853225|gb|EDS24481.1| probable transcriptional regulator [Haemophilus parasuis 29755] gi|219691919|gb|ACL33142.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 86 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 37/69 (53%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R F NN R IR+ ++Q+ + ++++IS++E GK I+ID M +A L Sbjct: 7 TSHPIRHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRAISIDAMGKIADAL 66 Query: 74 DTPLWKLLK 82 D L LLK Sbjct: 67 DVNLVDLLK 75 >gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 72 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELVSP 68 >gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13] gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13] gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13] Length = 75 Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+GF+Q ++S LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 63 Query: 79 KLLKP 83 +L KP Sbjct: 64 ELFKP 68 >gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 73 Score = 84.3 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+GF+Q ++S LE G+ + + LA L Sbjct: 2 RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 61 Query: 79 KLLKP 83 +L KP Sbjct: 62 ELFKP 66 >gi|27802476|gb|AAO21114.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 72 Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + LA LD Sbjct: 4 RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVSHV 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELVRP 68 >gi|329120702|ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327460499|gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 82 Score = 84.3 bits (207), Expect = 6e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RMIF N R IR+ +++Q+E+ ++ +I E+E G + ID M ++ L+ PL Sbjct: 12 RMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMGRISDALEVPLD 71 Query: 79 KLL 81 KLL Sbjct: 72 KLL 74 >gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89] gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89] Length = 154 Score = 83.5 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 72 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+E+ R+GF+Q ++S LE G+ + + L+ L Sbjct: 4 RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHV 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELVQP 68 >gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] Length = 118 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 40/72 (55%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + ++ +F R IRK+ +TQ E+ +TG A +IS +ETGK+ +++D + L Sbjct: 1 MDNLAGIDKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLV 60 Query: 71 HTLDTPLWKLLK 82 + D P L+ Sbjct: 61 NAFDVPADYYLQ 72 >gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli UM146] Length = 154 Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R ++Q+ +R GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|322513230|ref|ZP_08066356.1| DNA-binding protein [Actinobacillus ureae ATCC 25976] gi|322121006|gb|EFX92847.1| DNA-binding protein [Actinobacillus ureae ATCC 25976] Length = 86 Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R F NN R IR+ ++Q+ + ++++IS++E GK +ID M +A L+ Sbjct: 10 PIRHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRATSIDAMGKIADALNVS 69 Query: 77 LWKLLK 82 L LLK Sbjct: 70 LIDLLK 75 >gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 72 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+GF+Q +IS LE G+ + + LA L Sbjct: 4 RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63 Query: 79 KLLK 82 +L++ Sbjct: 64 ELVR 67 >gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280] gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280] Length = 154 Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F + R L+Q+ +R GFA+S++S +E G S ++D + +LA L W Sbjct: 6 RYLFGQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPW 65 Query: 79 KLL 81 +LL Sbjct: 66 QLL 68 >gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R++ LTQ+++ R+GF+Q ++S LE G + + L+ L Sbjct: 4 RKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|13474794|ref|NP_106364.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] gi|14025550|dbj|BAB52150.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] Length = 75 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+E LTQ+++ R+G++Q ++S LE G+ + + L+ L Sbjct: 7 RQLVGTNFARLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHV 66 Query: 79 KLLKP 83 +L+KP Sbjct: 67 ELVKP 71 >gi|300309363|ref|YP_003773455.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072148|gb|ADJ61547.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 89 Score = 81.2 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 42/67 (62%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+IF N R +R+ +++Q+E+ R +++++SE+E G+ I++DNM LA L+ Sbjct: 8 PSARLIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEM 67 Query: 76 PLWKLLK 82 L LL+ Sbjct: 68 ELPDLLR 74 >gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 72 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R IR + LTQ++ +GF+Q +IS LE G+ + + LA L Sbjct: 4 RKTVGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHL 63 Query: 79 KLLKP 83 LL+P Sbjct: 64 DLLRP 68 >gi|326385864|ref|ZP_08207491.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326209653|gb|EGD60443.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R++ LTQ+++ R+GF+Q ++S LE G+ + + L+ L Sbjct: 4 RKLVGRNFARLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|296314733|ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC 43768] gi|296838467|gb|EFH22405.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC 43768] Length = 81 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 41/71 (57%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 R+IF N R +R+ +L+Q+E+ ++++ISE+E G +++ID M +A Sbjct: 4 PTTPNPYRLIFAQNMRQVRRLKELSQEELAFSARVSKTYISEIERGSRSVSIDVMGQIAD 63 Query: 72 TLDTPLWKLLK 82 L PL +L++ Sbjct: 64 ALGMPLEELVR 74 >gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 72 Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +R+ LTQ+++ R+G +Q ++S LE G+ I + LA LD Sbjct: 4 RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVSHV 63 Query: 79 KLLKP 83 +L+ P Sbjct: 64 ELVLP 68 >gi|332296775|ref|YP_004438697.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332179878|gb|AEE15566.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 104 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IR KL Q E+ + G + ++S+LETG+S+ + D ++ LA L ++ Sbjct: 5 ETYAANIKKIRIAKKLNQAELAEKLGLSVKYVSDLETGRSSGSFDTLVNLADALGVEPYE 64 Query: 80 LLKP 83 LL P Sbjct: 65 LLLP 68 >gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] Length = 72 Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 38/64 (59%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +N R +R+ L+Q+++ + +++I +E G+ +++DN++ +AH L P Sbjct: 6 RKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHALGVPAS 65 Query: 79 KLLK 82 KLL+ Sbjct: 66 KLLE 69 >gi|116073|sp|P23939|CEBA_BACAM RecName: Full=BamHI control element gi|1333709|emb|CAA39000.1| BamH I control element [Bacillus amyloliquefaciens] Length = 102 Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++F R IR ++Q+++ +++IS++E G +++DN+ ++ L Sbjct: 27 RLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKALGVQP 86 Query: 78 WKLL 81 LL Sbjct: 87 KDLL 90 >gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 76 Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + F R +R ++Q+ +R GFA++++S +ETG + +I+ + +LA Sbjct: 4 PPPSPALQHQFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLAD 63 Query: 72 TLDTPLWKLLK 82 L + L + Sbjct: 64 ALGVSISALFE 74 >gi|240950283|ref|ZP_04754558.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240295185|gb|EER45993.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 88 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 41/70 (58%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R R IF N R IR+ ++Q+ + ++++I E+E G+ +++ID M +A T Sbjct: 7 NTAHRLRYIFAKNMRRIRRWKDISQEALALNANVSRTYIGEIERGERSVSIDVMGKIADT 66 Query: 73 LDTPLWKLLK 82 L+ L +L+K Sbjct: 67 LEVELSELVK 76 >gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 224 Score = 77.0 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 39/64 (60%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F ++ R E ++Q+E+ +R G ++++S++E G +++ ++ LAH L +W Sbjct: 7 KSLFGTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGMRNVSLISIEKLAHALGLSVW 66 Query: 79 KLLK 82 +L + Sbjct: 67 RLFE 70 >gi|115526032|ref|YP_782943.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519979|gb|ABJ07963.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 84 Score = 76.6 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +RKE TQ+ +GF Q ++S LE GK + + LA L Sbjct: 4 RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLIQP 68 >gi|225016335|ref|ZP_03705527.1| hypothetical protein CLOSTMETH_00238 [Clostridium methylpentosum DSM 5476] gi|224950878|gb|EEG32087.1| hypothetical protein CLOSTMETH_00238 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 38/63 (60%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF N + RK+ +Q+++ +G +++IS +E G+ +I+++N+ +A L+ + Sbjct: 17 KKIFGENIKKYRKQKSFSQEKLAELSGLHRTYISAVECGRRSISLNNIEKIADALEVETY 76 Query: 79 KLL 81 +L Sbjct: 77 QLF 79 >gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 77 Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N IR E LTQ++ + +GF+Q ++S LE GK I + LA L+ Sbjct: 4 RRLVGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|90425389|ref|YP_533759.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107403|gb|ABD89440.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 84 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + NF +RKE TQ+ +GF Q ++S LE GK + + LA L Sbjct: 4 RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLIQP 68 >gi|302880116|ref|YP_003848680.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302582905|gb|ADL56916.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 73 Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 37/70 (52%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R+ F N R R + +Q+++ +G ++++ +E G+ I+IDNM LA+ Sbjct: 4 KQKISARLRFSKNLREARLRREWSQEDLAEESGLHRTYVGSVERGERNISIDNMECLANA 63 Query: 73 LDTPLWKLLK 82 + L LLK Sbjct: 64 VGVELIDLLK 73 >gi|328554991|gb|AEB25483.1| transcription regulator protein [Bacillus amyloliquefaciens TA208] gi|328913346|gb|AEB64942.1| BamHI control element [Bacillus amyloliquefaciens LL3] Length = 81 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++F R IR ++Q+++ +++IS++E G +++DN+ ++ L Sbjct: 6 RLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKALGVQP 65 Query: 78 WKLL 81 LL Sbjct: 66 KDLL 69 >gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 72 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N + IR+ +LTQ+++ + +GF+Q +IS LE G+ I + LA L Sbjct: 4 RKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVSHM 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLVRP 68 >gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427] gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 ++ + +RKE K++QKE+ +G + S+I ++E+GK +++ + +A LDTP++ Sbjct: 1 MYGEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYH 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 68 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R+E LTQ+ + +R+G +Q ++S LE GK I + ++ L +L Sbjct: 1 MVGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLEL 60 Query: 81 LKP 83 L+P Sbjct: 61 LRP 63 >gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RK L+Q+++ TGF +++I +E G+ + N+ I A+ D L +L Sbjct: 9 FGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAFDLSLSELF 68 >gi|153009785|ref|YP_001371000.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561673|gb|ABS15171.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 72 Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I +N IR E LTQ+++ +GF+Q ++S LE G+ I + L+ L+T + Sbjct: 2 RKIVGDNLTWIRIEKGLTQEQVAEGSGFSQQYLSSLERGQYNPTIITIYELSLALETTYF 61 Query: 79 KLLKP 83 L+ P Sbjct: 62 SLILP 66 >gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 73 Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L ++ F + +R TQ+E+ TG ++I +E G+ + +DN++ +A L Sbjct: 2 SLTDKQRFGRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGERNLGLDNLLKIARALG 61 Query: 75 TPLWKLL 81 P LL Sbjct: 62 EPPAALL 68 >gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica] gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 78 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R+IF +N R +R+ L+Q+ + + G +++I +E + I+IDN+ +A L Sbjct: 9 RARVIFAHNIRKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDRIASALGVS 68 Query: 77 LWKLLK 82 LL+ Sbjct: 69 PSSLLE 74 >gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 164 Score = 73.9 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +R +Q++ G +++++ +E GK I+I+N+ +A+ L+ L Sbjct: 3 KELVGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEITLS 62 Query: 79 KLL 81 +L Sbjct: 63 ELF 65 >gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 231 Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + +R + ++Q+ + R G +S+IS +E G+ ++I N+ +A L + Sbjct: 4 RIEFGQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGERNVSIINIEKIASALQIGVA 63 Query: 79 KLL 81 L Sbjct: 64 YLF 66 >gi|61680543|pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|61680544|pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|32263455|gb|AAP78483.1| C.AhdI [Aeromonas hydrophila] Length = 74 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 H A L + F R +R L+Q+ + +G +S++ +E G+ +++ N++ Sbjct: 3 SHHDHYADLVK---FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNIL 59 Query: 68 ILAHTLDTPLWKLL 81 LA LD +L Sbjct: 60 KLATALDIEPRELF 73 >gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] Length = 72 Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F RN+RK+A ++Q+E+ +R G ++++ +E G+ ++ N+ ++ L P+ L Sbjct: 11 FGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALKVPVSDLF 70 Query: 82 K 82 K Sbjct: 71 K 71 >gi|189459599|ref|ZP_03008384.1| hypothetical protein BACCOP_00225 [Bacteroides coprocola DSM 17136] gi|189433681|gb|EDV02666.1| hypothetical protein BACCOP_00225 [Bacteroides coprocola DSM 17136] Length = 108 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF N + RKE L+Q+++ G +++I +E + I + N+ +A L+ L K Sbjct: 43 EIFGRNVQKYRKEQHLSQEKLAEYAGLHRTYIGMIERAEKNITLVNIEKIAKALNINLTK 102 Query: 80 LLK 82 LL+ Sbjct: 103 LLE 105 >gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681] gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus polymyxa E681] Length = 112 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +RKE L+Q+ + + GF S+I ++E G+ +++ N+ +A+ LD L + Sbjct: 8 KLVGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAKIANALDVNLIQ 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 114 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK TQ+++ G S+I +E G I+++ + + L+ P ++L Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALNVPAFELF 66 Query: 82 K 82 + Sbjct: 67 Q 67 >gi|148263207|ref|YP_001229913.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146396707|gb|ABQ25340.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 77 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 A R I N RN R + +Q+E+ + G +++I +E G+ + + + +LA T Sbjct: 3 KASENIRAILAENIRNFRHKKNFSQEELAEKCGLHRTYIGSVERGERNVTLSTLEVLAST 62 Query: 73 LDTPLWKLL 81 L + +LL Sbjct: 63 LGVSVPELL 71 >gi|307243674|ref|ZP_07525814.1| transcriptional regulator, PvuIIC family protein [Peptostreptococcus stomatis DSM 17678] gi|306492883|gb|EFM64896.1| transcriptional regulator, PvuIIC family protein [Peptostreptococcus stomatis DSM 17678] Length = 68 Score = 72.7 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + R E L+Q+ ++G +++IS LE K +I +DN+ +A L+ + Sbjct: 5 EVFAKNLKKYRNEMGLSQEAFAEKSGLHRTYISALECKKRSIALDNVQKIADALEIEPYL 64 Query: 80 LLK 82 L K Sbjct: 65 LFK 67 >gi|325527286|gb|EGD04653.1| helix-turn-helix domain-containing protein [Burkholderia sp. TJI49] Length = 84 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 L + I R R+E L+Q++ G ++++ +E G+ + + + Sbjct: 4 TKSLRKPSPPLKAILATRIRVYRQEHGLSQEDFAELCGIHRTYVGSVERGERNVTLSTLE 63 Query: 68 ILAHTLDTPLWKLLK 82 + A + P+ +LL Sbjct: 64 VFASVMGIPVPELLT 78 >gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 114 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R +RK TQ+++ G S+I +E G I+++ + + L P ++ Sbjct: 5 ESVGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFE 64 Query: 80 LLK 82 L + Sbjct: 65 LFQ 67 >gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 91 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N +R+ KLTQ+E+ R+GF+Q ++S++E G I + +A L Sbjct: 4 RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVSHV 63 Query: 79 KLLKP 83 L++P Sbjct: 64 ALVEP 68 >gi|19908850|gb|AAM03020.1|AF472611_1 regulatory protein C.BcnI [Brevibacillus centrosporus] Length = 74 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R IR++ LTQ+++ G +++IS LE G+ +I+++N+ +A LD +++L Sbjct: 8 FGRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGERSISLNNIEKIARALDVEIYQLF 67 >gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] Length = 383 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +NIRK +TQ + G ++S+I +LE +S +I + +A LD P+ L+ Sbjct: 130 GNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 188 >gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410] gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410] gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 460 Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +NIRK +TQ + G ++S+I +LE +S +I + +A LD P+ L+ Sbjct: 207 GNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 265 >gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 89 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R +A L+Q+ ++ G +++IS +E G ++ + ++A L+ L L Sbjct: 28 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 87 >gi|268611010|ref|ZP_06144737.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 69 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N R R K++Q++ G +++IS++E + +I+++N+ +A L+ + Sbjct: 5 KVFGTNVRKYRTIKKISQEKFAELCGLHRTYISDIECFRRSISLENIQKIADALEIETYL 64 Query: 80 LLK 82 L K Sbjct: 65 LFK 67 >gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 77 Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R +A L+Q+ ++ G +++IS +E G ++ + ++A L+ L L Sbjct: 16 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 75 >gi|260222943|emb|CBA33015.1| hypothetical protein Csp_B16920 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 100 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 40/75 (53%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D ++ + + I + +R+EA+L+Q+ + R G ++++S +E+G + + + Sbjct: 23 DTASVTKNKINYKRIVGQRIKGLRQEAELSQEILSERCGIYRTYLSRIESGSANPTLLVL 82 Query: 67 IILAHTLDTPLWKLL 81 + LA +L +LL Sbjct: 83 VALADSLGVQPAELL 97 >gi|119385131|ref|YP_916187.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374898|gb|ABL70491.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 75 Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R I N R +R E +Q+ + + G ++++S +E + I+IDN+ +A Sbjct: 5 PKSPLRDIVARNMRRLRAERGWSQEYLAHECGLNRTYLSAVERSEQNISIDNLYRVAQGF 64 Query: 74 DTPLWKLLK 82 W LLK Sbjct: 65 GVESWTLLK 73 >gi|116331369|ref|YP_801087.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125058|gb|ABJ76329.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 114 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + ER F N R R E LTQ ++ R G QS+IS++E+GK + I++ I L Sbjct: 41 EISDEERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCEL 100 Query: 73 LDTPL 77 + P Sbjct: 101 YNKPP 105 >gi|116327819|ref|YP_797539.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120563|gb|ABJ78606.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 114 Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + ER F N R R E LTQ ++ R G QS+IS++E+GK + I++ I L Sbjct: 41 EISDEERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCEL 100 Query: 73 LDTPL 77 + P Sbjct: 101 YNKPP 105 >gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus] Length = 77 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + IR + ++Q+E+ + G +++ISE+E G I++ N+ + LD P Sbjct: 8 KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPAS 67 Query: 79 KLLK 82 + Sbjct: 68 TFFR 71 >gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 71 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ + +R F R +RK+A+++Q+E+ R G ++++ +E G+ ++ N+ +A Sbjct: 1 MTKKTIEQR--FGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIA 58 Query: 71 HTLDTPLWKLL 81 L+ P+ L Sbjct: 59 KALEVPISDLF 69 >gi|308229519|gb|ADO24172.1| C.AciIP [Arthrobacter citreus] Length = 75 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 37/64 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + R + +Q+++ + + +++IS +E + I ++N +A+ L+ PL+K Sbjct: 5 KLFAKNIKIYRTKNGYSQEKLADLSQLHRTYISSVERSQRNITLENAEKIANALNIPLYK 64 Query: 80 LLKP 83 LL P Sbjct: 65 LLLP 68 >gi|261819794|ref|YP_003257900.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603807|gb|ACX86293.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 78 Score = 71.2 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R+IF +N + +R+ L+Q+ + + G +++I +E + I+IDN+ +A L Sbjct: 9 RARVIFSHNIKKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDRIASALCVS 68 Query: 77 LWKLLK 82 LL+ Sbjct: 69 PSYLLE 74 >gi|300718357|ref|YP_003743160.1| transcriptional regulator, XRE family protein [Erwinia billingiae Eb661] gi|299064193|emb|CAX61313.1| Transcriptional regulator, XRE family protein [Erwinia billingiae Eb661] Length = 72 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 37/70 (52%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + +++F + +R +A L+Q+ ++ G ++++S +E G ++ + ILA Sbjct: 2 EKLNTTKVLFGKRVKQLRLQAGLSQEAFAHKCGLDRTYVSGIERGLRNPTLEVIAILAKG 61 Query: 73 LDTPLWKLLK 82 L L L++ Sbjct: 62 LGIELKNLIE 71 >gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 72 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R +A L+Q+ ++ G +++IS +E G ++ + ++A L+ L L Sbjct: 11 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 70 >gi|237802182|ref|ZP_04590643.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025039|gb|EGI05095.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 160 Score = 71.2 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--- 75 R F R +R + ++Q+ + A+S++S +E G + ++D + +LA L Sbjct: 6 RKRFGLRVRELRIASGMSQEAFADHASIARSYMSRIERGGANPSLDAIQVLAEALGVDAG 65 Query: 76 PLWKLLKP 83 L+++++P Sbjct: 66 ALFEIVEP 73 >gi|188991259|ref|YP_001903269.1| putative regulatory protein. [Xanthomonas campestris pv. campestris str. B100] gi|167733019|emb|CAP51217.1| putative regulatory protein [Xanthomonas campestris pv. campestris] Length = 91 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP + P + R++F +RK L+Q+ + +G A+S++ +E G+ Sbjct: 1 MPPHRSHMPEKAMPTDP-RVLFGLRLAEVRKAKGLSQERLALESGLARSYLGGVERGQRN 59 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 I + N+ LA L LL+P Sbjct: 60 IALLNIYRLAEALGVRPTSLLEP 82 >gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 70.8 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++RK+A ++Q+E+ +R G ++++ +E G+ ++ N+ ++ L P+ L Sbjct: 11 FGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLF 70 Query: 82 K 82 K Sbjct: 71 K 71 >gi|225076898|ref|ZP_03720097.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens NRL30031/H210] gi|224951784|gb|EEG32993.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens NRL30031/H210] Length = 84 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R++R+ L+Q+ + + +++I +E G+ + N+I LA LD L + Sbjct: 7 KQFGKHVRHLRQLQDLSQETLAEKANMHRTYIGMIERGERNPALLNLIRLASALDISLPE 66 Query: 80 LLK 82 LL Sbjct: 67 LLT 69 >gi|254415140|ref|ZP_05028902.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC 7420] gi|196177946|gb|EDX72948.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC 7420] Length = 72 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +N R +R+E ++Q+E+ + G ++++ +E + I + + LA +L Sbjct: 5 QVVASNLRKLRQEIGISQEELAGKCGLHRTYVGAIERSERNITLQTLEKLAVSLGVSPLD 64 Query: 80 LLK 82 LLK Sbjct: 65 LLK 67 >gi|168702699|ref|ZP_02734976.1| putative transcriptional regulator [Gemmata obscuriglobus UQM 2246] Length = 84 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ A ++Q+ + G ++++S +E GK I+++N+ LA L+ + L+ Sbjct: 16 FGERLREVREGAGISQERLAELAGLHRTYVSSVERGKRNISLENIERLAVALEVEMAALM 75 >gi|254520499|ref|ZP_05132555.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914248|gb|EEH99449.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 111 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R R + LTQ+++ + + S+I ++E G+ I++D ++++ +L + Sbjct: 4 KLLGNRIRQERLKLNLTQEQLAEKVDLSTSYIGQIERGERNISLDTLVVICKSLGVTIDY 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLQ 66 >gi|197303928|ref|ZP_03168960.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC 29176] gi|197296896|gb|EDY31464.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC 29176] Length = 77 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 39/63 (61%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ + R IR++ K++Q+E+ + G +++IS++E GK ++++N+ +AH L Sbjct: 6 RVAYGKAVRAIRQDKKISQEELGDLCGLHRTYISDIELGKRNVSLENIDKIAHALQMKKS 65 Query: 79 KLL 81 +L Sbjct: 66 ELF 68 >gi|37528130|ref|NP_931475.1| hypothetical protein plu4299 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787567|emb|CAE16671.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF R IR + ++Q+ ++ G +++IS +E G ++ + ++A L L Sbjct: 8 KSIFGQRVRYIRMASGMSQEAFADKCGLDRTYISGIERGVRNPTLEVINVIASGLQIELK 67 Query: 79 KLL 81 L Sbjct: 68 DLF 70 >gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme contro elements [Photorhabdus asymbiotica] Length = 78 Score = 70.8 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F R++R+ + ++Q+ ++ G +++IS +E G ++ + I+A L L Sbjct: 8 KSLFGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASGLQIELT 67 Query: 79 KLL 81 L Sbjct: 68 DLF 70 >gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 76 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + + +R +A L+Q+ + G +++IS +E G ++ + ILA Sbjct: 2 KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61 Query: 73 LDTPLWKLL 81 L T L L Sbjct: 62 LHTDLTTLF 70 >gi|152983227|ref|YP_001352681.1| subunit S of type I restriction-modification system [Janthinobacterium sp. Marseille] gi|151283304|gb|ABR91714.1| subunit S of type I restriction-modification system [Janthinobacterium sp. Marseille] Length = 78 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++F +N R IR E TQ+ + +++S +E G+ I+I N+ +A LD P+ Sbjct: 12 AQLLFASNIRRIRLEKGFTQERVAELADLHTNYVSSVERGERNISICNIERIAFALDVPM 71 Query: 78 WKLLK 82 +LL+ Sbjct: 72 SRLLE 76 >gi|326407994|gb|ADZ65062.1| transcriptional regulator, XRE family [Lactococcus lactis subsp. lactis CV56] Length = 73 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF NN + R + L+Q++ +++IS++E + ++++++ +A + +K Sbjct: 5 KIFGNNVKRYRLKMGLSQEKFAELCNLHRTYISDIECFQRNVSLESVQKIAEAIQIEPYK 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|253987940|ref|YP_003039296.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779390|emb|CAQ82551.1| similar to transcription regulator and to restriction enzyme control elements [Photorhabdus asymbiotica] Length = 78 Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F R IR + ++Q+ +R G +++IS +E G ++ + ++A L L Sbjct: 8 KSLFGQRVRYIRMASGMSQEAFADRCGLDRTYISGIERGVRNPTLEVINVIASGLQIELK 67 Query: 79 KLL 81 L Sbjct: 68 DLF 70 >gi|261879523|ref|ZP_06005950.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333840|gb|EFA44626.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 73 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF + R +R++ L+Q+++ R G +++I +E + ++ + +A+ L + Sbjct: 11 KIFAHKVRTLREQQGLSQEKLAERAGLHRTYIGMVERLERNPSLVCIYKIANGLGVHASQ 70 Query: 80 LL 81 L Sbjct: 71 LF 72 >gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + + +R +A L+Q+ + G +++IS +E G ++ + ILA Sbjct: 2 KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILAAG 61 Query: 73 LDTPLWKLL 81 L T L L Sbjct: 62 LHTDLTTLF 70 >gi|298206675|ref|YP_003714854.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] gi|83849306|gb|EAP87174.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] Length = 67 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F NN R +RKE +Q+E+ ++ +++I +E + I + N+ ++ LD + +L Sbjct: 8 FGNNIRRLRKEQGFSQEELAHKADLHRTYIGMIERAEKNITLLNIGKISKALDVEIKELF 67 >gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7] gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7] Length = 70 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R + ++Q+E+ R G ++++IS++E G +++ ++ +A+ L +L Sbjct: 8 FGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAVNLKELF 67 >gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + + +R +A L+Q+ + G +++IS +E G ++ + ILA Sbjct: 2 KTSDSVKTLLGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61 Query: 73 LDTPLWKLL 81 L T L L Sbjct: 62 LHTDLTTLF 70 >gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 73 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + +F + R +R+E +Q+E+ R G ++++ +E G+ + ++N++ LA L Sbjct: 2 PAHSPKFLFGKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKAL 61 Query: 74 DTPLWKLLK 82 L + Sbjct: 62 SVKSRDLFE 70 >gi|50364882|ref|YP_053307.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1] gi|50363438|gb|AAT75423.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1] Length = 78 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ +N + IR+ KL+Q+E+ R G +++++S+ E GK I I + L + Sbjct: 12 LLVASNLKRIRQNKKLSQEELGFRCGISKNYVSDFERGKRNITIKVFQKIVEGLGVQPEE 71 Query: 80 LLK 82 LLK Sbjct: 72 LLK 74 >gi|297570404|ref|YP_003691748.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296926319|gb|ADH87129.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 77 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK L+Q+E+ ++ +++I +E + I + NM+ +A LD L +LL Sbjct: 11 FGGRVKLARKNKGLSQEELASKASLHRTYIGMIERAEKNITLINMMKIAKALDVKLIELL 70 Query: 82 K 82 + Sbjct: 71 E 71 >gi|167754979|ref|ZP_02427106.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] gi|167705029|gb|EDS19608.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] Length = 73 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R + ++Q+E+ R G ++++IS++E G +++ ++ +A+ L +L Sbjct: 11 FGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAVNLKELF 70 >gi|188583054|ref|YP_001926499.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346552|gb|ACB81964.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 79 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R IR E L+Q + + +++IS +E G ++ID + LA L W Sbjct: 10 REILATNLRRIRAEKGLSQDALADLCEIDRTYISGVERGLRNVSIDTLERLATGLRLEPW 69 Query: 79 KLLK 82 L++ Sbjct: 70 LLIR 73 >gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa E681] Length = 115 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+IRK L+Q+ + + GF S+I +E + I++ N+ +A L+ +++ Sbjct: 6 ELVGTRIRDIRKSKGLSQEALAEKAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQ 65 Query: 80 LLK 82 LL Sbjct: 66 LLT 68 >gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 83 Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+E +Q+E+ + G +++IS +ETG ++ N+ LA L+ + L Sbjct: 12 FGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGTRNPSLKNIEKLAKALNISISDLF 71 Query: 82 K 82 Sbjct: 72 T 72 >gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 120 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R+ R +Q+++ + G +++I +E G+ I + N +A L+ + L Sbjct: 10 MLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIADALNLAMHDL 69 Query: 81 LK 82 +K Sbjct: 70 MK 71 >gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F R +R+E +Q+E +R G ++++S +E G + + LA LD L Sbjct: 4 RQKFGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSVLERLAKALDIKLS 63 Query: 79 KLLK 82 +L++ Sbjct: 64 ELVQ 67 >gi|212640061|ref|YP_002316581.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561541|gb|ACJ34596.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 81 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I NN R+IR L+Q+E+ +G +++I +E G+ I I N+I +A+ L+ + Sbjct: 12 KIIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIKIANALEVRVQD 71 Query: 80 LL 81 LL Sbjct: 72 LL 73 >gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 179 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + LTQ+E+ RT ++ +IS++E S+ +++ + L + L + + Sbjct: 3 VGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKEFF 62 >gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 83 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I R +R + L+Q+ ++ G ++++S +E G + + ++ L+ L Sbjct: 8 KKILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDGLEMDLS 67 Query: 79 KLL 81 L Sbjct: 68 HLF 70 >gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F R R+ + ++Q+ ++ G +++IS +E G ++ + I+A L L Sbjct: 8 KFLFGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASGLQIELT 67 Query: 79 KLL 81 L Sbjct: 68 DLF 70 >gi|323345085|ref|ZP_08085309.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323094355|gb|EFZ36932.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 85 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R++ ++Q+E+ R G +++I +E + + + N+ +A L + L Sbjct: 25 FGQIVRRYREDMNISQEELAFRAGLHRTYIGMIERAEKNVTLCNIKKIADALGIDIKDLF 84 >gi|300692596|ref|YP_003753591.1| hypothetical protein RPSI07_2974 [Ralstonia solanacearum PSI07] gi|299079656|emb|CBJ52333.1| conserved hypothethical protein, DNA binding protein domain, putative regulator [Ralstonia solanacearum PSI07] Length = 75 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N R R E L+Q+++ + G ++++ LE + + I N+ +A LD L Sbjct: 13 IFAANVRRRRLELGLSQEDLAEKAGVHRTYVGMLERAEKNVTIYNIQRIADALDVEPSAL 72 Query: 81 LK 82 L+ Sbjct: 73 LQ 74 >gi|24376233|ref|NP_720341.1| type II restriction-modification system activator, putative [Shewanella oneidensis MR-1] gi|24344698|gb|AAN52941.1| type II restriction-modification system activator [Shewanella oneidensis MR-1] Length = 75 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R R + ++Q+++ GF +++I +E G+ + + +LA TL+ + +LL Sbjct: 12 LANNVRTFRLKNGISQEQLAEICGFHRTYIGSIERGERNTTLSTLEVLAKTLNVSIAQLL 71 >gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 108 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ +L+Q + G ++ E+E G + I++ N+ +A L ++LL Sbjct: 8 LGKRIRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNNISVKNLGQIAAALGVETYELL 67 >gi|311278399|ref|YP_003940630.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747594|gb|ADO47346.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 76 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R ++ L+Q+ ++ G ++++S +E G ++ + +LA L + +L Sbjct: 11 FGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVIGVLAKGLGMDIKELF 70 >gi|297539828|ref|YP_003675597.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297259175|gb|ADI31020.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 76 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F ++IR E L+Q+++ +++IS +E G +++ N+ LA L+ + Sbjct: 7 KVFGARIKSIRLEKGLSQEQLGLIAELDRTYISGIERGLRNVSLINIERLALALNIEPAE 66 Query: 80 LLK 82 LLK Sbjct: 67 LLK 69 >gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 78 Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R +R+ L+Q+ + + +S+I +E G+ I++ N+ +A L Sbjct: 10 RKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIADALGISPK 69 Query: 79 KLL 81 + Sbjct: 70 EFF 72 >gi|148553099|ref|YP_001260681.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498289|gb|ABQ66543.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 75 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N +RK+ L Q+ G +QS++S++E G + + + LA L P Sbjct: 4 RKLVGGNVARLRKKTGLKQEPFSEAAGISQSYLSQIENGHVNLTLLGVNDLAQALGVPPI 63 Query: 79 KLLK 82 +L + Sbjct: 64 ELFR 67 >gi|209543154|ref|YP_002275383.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530831|gb|ACI50768.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 83 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N R +R+ A L+Q+ + R G +++IS +ETG+ + + ++ + L Sbjct: 4 RGLFGANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNVTLLSLWHASQALGVRPA 63 Query: 79 KLL 81 LL Sbjct: 64 ALL 66 >gi|255012031|ref|ZP_05284157.1| DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313149871|ref|ZP_07812064.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313138638|gb|EFR55998.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 72 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R+ ++Q+++ R G +++I +E + ++ + +A+ L + + Sbjct: 11 KQFAQRVRTLREAQGISQEKLAERAGLHRTYIGMVERLERNPSLVCIHKIANGLGVHVTE 70 Query: 80 LL 81 L Sbjct: 71 LF 72 >gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F R IR+ +TQ+++ +G + +I E+E G+ ++ ++ LA PL Sbjct: 5 QELFGKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLA 64 Query: 79 KLL 81 +L Sbjct: 65 ELF 67 >gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] Length = 119 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +RK+ LTQ+E+ R Q++I +E G+ I++ + +A L+ Sbjct: 6 KLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEVSPDL 65 Query: 80 LL 81 +L Sbjct: 66 VL 67 >gi|163732391|ref|ZP_02139837.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161394689|gb|EDQ19012.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 71 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N + RK+A +Q+ + G ++++S +E G + + +A L P Sbjct: 4 RQRVGRNLKKYRKQAGFSQEGLALECGLHRTYVSGVERGVRNPTVVVLERIAEALKVPAA 63 Query: 79 KLL 81 +LL Sbjct: 64 RLL 66 >gi|258543862|ref|ZP_05704096.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC 15826] gi|258520902|gb|EEV89761.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC 15826] Length = 85 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E +++I R+ F N R +R+ ++Q+E+ G ++ ++S++E G + ID M Sbjct: 3 EAQSTESIPEIRLRFAQNLRTLRRLKNISQEELAFSAGISRVYLSDVERGNRAVTIDVMG 62 Query: 68 ILA 70 LA Sbjct: 63 KLA 65 >gi|50365272|ref|YP_053697.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1] gi|50363828|gb|AAT75813.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1] Length = 75 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N R IR LTQ+E+ R G ++++IS+ E G+ I I + L L+T + Sbjct: 12 LIIAANLRKIRSSKGLTQEELGFRCGISKNYISDFERGRRNITIKILQKLIEGLETTPQE 71 Query: 80 LLK 82 LLK Sbjct: 72 LLK 74 >gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R RK+ TQ+++ S+I +E G I+++ + +A LD P Sbjct: 5 EIVGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERGDRNISLETLEKIAVALDVPAGD 64 Query: 80 LLK 82 L + Sbjct: 65 LFR 67 >gi|78048175|ref|YP_364350.1| hypothetical protein XCV2619 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036605|emb|CAJ24296.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 91 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F +RK L+Q+ + +G A+S++ +E G+ I + N+ LA L Sbjct: 18 RVLFGLRLAEVRKTKGLSQERLALESGLARSYLGGVERGQRNIALLNIYRLAEALGVHPT 77 Query: 79 KLLKP 83 LL+P Sbjct: 78 LLLEP 82 >gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F ++IR+ +TQ+++ + +G + +I E+E G+ ++ ++ LA LD P+ +L Sbjct: 7 LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAEL 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|221213709|ref|ZP_03586683.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166498|gb|EED98970.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 81 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F +RK +Q+++ +G A+S++ +E G+ I + N+ +LA TL+ P Sbjct: 7 ELFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVPPSD 66 Query: 80 LL 81 +L Sbjct: 67 ML 68 >gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 67.7 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 E F + + RK K+T KE+ + S +S++E G + +I+ M ++A+ Sbjct: 2 KKEPYEENTFYSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANA 61 Query: 73 LDTPLWKLL 81 LD PL+K Sbjct: 62 LDVPLFKFF 70 >gi|11995223|ref|NP_072081.1| PvuIIC [Proteus vulgaris] gi|455322|gb|AAA96335.1| PvuIIC [Proteus vulgaris] Length = 84 Score = 67.7 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 36/66 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L R+ N + +R E L+Q+ + + G +++I +E + I+IDN+ +A+ L+ Sbjct: 8 LSARLTLAKNVKKMRGELGLSQESLADLVGIHRTYIGSIERAERNISIDNIERIANALNV 67 Query: 76 PLWKLL 81 + L+ Sbjct: 68 SISILM 73 >gi|114045848|ref|YP_736398.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|117922235|ref|YP_871427.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|113887290|gb|ABI41341.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] gi|117614567|gb|ABK50021.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 76 Score = 67.7 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +++R E +Q+++ + ++++S +E G+ +++ N+ LA LD P +LL Sbjct: 9 FGTHLKSLRLERSFSQEQLALKADMDRTYVSGIERGQRNVSLINIFKLAKALDIPAKQLL 68 >gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 67.7 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 41/75 (54%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D H + +I N R++R+++ L+ +++ ++G +++ + ++ETGKS I+ + Sbjct: 11 DPQHSESVATKLSIIVGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAPTINLL 70 Query: 67 IILAHTLDTPLWKLL 81 +A L + L+ Sbjct: 71 GRIAEALQVSVPSLI 85 >gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 102 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R +A L+Q+ ++ G +++IS +E G ++ + ++A L+ L L Sbjct: 41 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADRLEIQLQSLF 100 >gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F ++IR+ +TQ+++ + +G + +I E+E G+ ++ ++ L+ LD P+ +L Sbjct: 7 LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAEL 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|295087511|emb|CBK69034.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 74 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RKE +++Q+E+ ++ +++I +E + + + N+ +A L+ + Sbjct: 8 FGERVRQLRKEKRMSQEELADKANLHRTYIGMIERAEKNVTLINIEKIAKALEVSIQDFF 67 >gi|162146218|ref|YP_001600677.1| transcriptional regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784793|emb|CAP54335.1| putative transcriptional regulatory protein [Gluconacetobacter diazotrophicus PAl 5] Length = 83 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N R +R+ A L+Q+ + R G +++IS +ETG+ + ++ + L Sbjct: 4 RGLFGANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNATLLSLWHASQALGVRPA 63 Query: 79 KLL 81 LL Sbjct: 64 TLL 66 >gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 96 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 ++ + R R+ N + +R E L+Q++ F ++++S+LE + I+ID Sbjct: 13 KNTHATLNPNARTRISL--NLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTNISIDG 70 Query: 66 MIILAHTLDTPLWKLLK 82 + LA L + +LL+ Sbjct: 71 LERLAEALGVDITELLQ 87 >gi|166364239|ref|YP_001656512.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159030851|emb|CAO88530.1| unnamed protein product [Microcystis aeruginosa PCC 7806] gi|166086612|dbj|BAG01320.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 103 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R + L+Q+ + +++IS LE GK ++ +I L L+ L +L Sbjct: 26 FGRCLHNARIQKGLSQERLAEAANLDRTYISLLERGKRNPSLLCLISLCRALNISLSELF 85 >gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 115 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+IRK L+Q+ + + GF S+I +E + I++ N+ +A L+ +++ Sbjct: 6 ELVGTRIRDIRKSKGLSQEALAEQAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQ 65 Query: 80 LLK 82 LL Sbjct: 66 LLT 68 >gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1] gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila RKU-1] Length = 188 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 16 GEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 74 >gi|217970536|ref|YP_002355770.1| XRE family transcriptional regulator [Thauera sp. MZ1T] gi|217507863|gb|ACK54874.1| transcriptional regulator, XRE family [Thauera sp. MZ1T] Length = 85 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 38/64 (59%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F + +R+ +Q+ + +G A+S++ +E G+ I + N+I LA+ L+ P Sbjct: 8 RVLFGKHLAELRRSRGWSQEYLALESGLARSYLGGVERGQRNIALLNIIRLANALELPPS 67 Query: 79 KLLK 82 KLL+ Sbjct: 68 KLLE 71 >gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 122 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +RK+ LTQ+E+ R Q++I +E G+ I++ + +A L+ K Sbjct: 9 KLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPEK 68 Query: 80 LL 81 +L Sbjct: 69 VL 70 >gi|56708873|ref|YP_164916.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680558|gb|AAV97223.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 72 Score = 67.7 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+E L+Q+E+ +R Q+++S +ETGK +I + +A L + ++ Sbjct: 10 VSRNIQRIRREKDLSQEEVAHRADIHQTYLSGVETGKRNPSILVVERIAKALGVDVSEIF 69 Query: 82 KP 83 KP Sbjct: 70 KP 71 >gi|148254764|ref|YP_001239349.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406937|gb|ABQ35443.1| putative transcriptional regulatory protein [Bradyrhizobium sp. BTAi1] Length = 87 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N +++R+ ++Q+E+ +R +++IS +E ++ ++ID + LA L Sbjct: 6 RDILATNLKHLRRTKGVSQEELAHRAEIDRTYISMIERSRNAVSIDVLAALAGGLGVEPA 65 Query: 79 KLLKP 83 LLKP Sbjct: 66 DLLKP 70 >gi|141422|sp|P14307|YSMA_SERMA RecName: Full=Uncharacterized HTH-type transcriptional regulator in smaI restriction system 5'region gi|581714|emb|CAA34477.1| unnamed protein product [Serratia marcescens] Length = 84 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N R+ R L+Q+++ +G +++I +E + + + +IILA L+T + Sbjct: 12 KEILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILAKALNTSVP 71 Query: 79 KLLK 82 KLL Sbjct: 72 KLLT 75 >gi|307704202|ref|ZP_07641125.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307622233|gb|EFO01247.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 108 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R++R K+TQ+E+ RT + +IS++E I+++ + + L+ PL P Sbjct: 10 NQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALEVPLSDFFLP 69 >gi|291530055|emb|CBK95640.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Eubacterium siraeum 70/3] Length = 115 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN R + L+Q+++ +G ++I ++E G+ ++++ +A ++ L +L + Sbjct: 14 GQRVRNYRIDKGLSQEKLAELSGCHPTYIGQVERGEKNATLESIEKIASAMNISLAQLFE 73 >gi|218248605|ref|YP_002373976.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061671|ref|YP_003139559.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169083|gb|ACK67820.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] gi|256591837|gb|ACV02724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 72 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R RK ++Q ++ + G +++I +E G+ +++ N++ LA L+ + + Sbjct: 6 KAFGMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADALEIKVKE 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 75 Score = 67.3 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R F R +RKE L+Q+ ++ GFA+S+ +ETGK+ ++D + +A L + Sbjct: 8 RQRFGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLGVEV 67 Query: 78 WKLLK 82 L + Sbjct: 68 SALFE 72 >gi|237798533|ref|ZP_04586994.1| hypothetical protein POR16_06826 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021386|gb|EGI01443.1| hypothetical protein POR16_06826 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 77 Score = 67.3 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 14 AILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 I ++ F +N R R L+Q+E+ G +++I LE + + I N+ L Sbjct: 2 PIPPDQCPLVATFASNVRIKRLALGLSQEELAELAGLHRTYIGMLERSEKNVTIYNIWRL 61 Query: 70 AHTLDTPLWKLL 81 A L LL Sbjct: 62 ACALQVEAVDLL 73 >gi|300717762|ref|YP_003742565.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] gi|299063598|emb|CAX60718.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] Length = 69 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ LTQ+ + ++++S LETGK ++ + LA L + ++ Sbjct: 9 FGKRVALLRKDKHLTQEALAEACDLNRTYLSGLETGKRNPSLSTISKLAKALGIQMKEIF 68 >gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 151 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 39/81 (48%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR+ + +L D L+ I +++R L+QK + ++G + +I +E G Sbjct: 1 MPRKPVNINNLDDETLKSLAIIGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQN 60 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I + ++ L+ P + +L Sbjct: 61 ATIGILKRISDALEVPFYSIL 81 >gi|86739602|ref|YP_480002.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566464|gb|ABD10273.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 81 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + F R R E L+Q+++ + G +++ ++E G+ I++ N++ LA L Sbjct: 5 PLSTAAQTFGERVRAQRHELGLSQEQLADECGLHWTFVGQVERGRRNISLHNILKLADAL 64 Query: 74 DTPLWKLLK 82 +L++ Sbjct: 65 KIDPAELVR 73 >gi|172034932|ref|YP_001801433.1| hypothetical protein cce_0015 [Cyanothece sp. ATCC 51142] gi|171696386|gb|ACB49367.1| unknown [Cyanothece sp. ATCC 51142] Length = 361 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R L+Q+++ +++IS LE GK ++ + LA L+ L +L+ Sbjct: 15 FGQKLQKWRLIQNLSQEQLAEIINVDRTYISLLERGKRNPSLICIKSLAEALNINLNELI 74 >gi|108936762|emb|CAK48822.1| Sse9I control protein [Sporosarcina sp.] Length = 92 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R++R L+Q+ + G ++++ LE G+ + ++ +A LD LL Sbjct: 18 FGQNLRDLRVARGLSQEALAELIGVHRTYMGGLERGERNPTLKSVERVAAHLDVDPLSLL 77 Query: 82 K 82 Sbjct: 78 T 78 >gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] Length = 119 Score = 66.9 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +RK+ LTQ+E+ + Q++I +E G+ I++ + +A L+ + Sbjct: 6 KLVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDE 65 Query: 80 LL 81 +L Sbjct: 66 VL 67 >gi|120600549|ref|YP_965123.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|146294707|ref|YP_001185131.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560642|gb|ABM26569.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] gi|145566397|gb|ABP77332.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 75 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R E +Q+++ + ++++S +E G+ +++ N+ LA LD P +LL Sbjct: 9 FGVHLKRLRLERSFSQEQLALKADMDRTYVSGIERGQRNVSLINIFKLAKALDIPAKQLL 68 >gi|254410170|ref|ZP_05023950.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC 7420] gi|196183206|gb|EDX78190.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC 7420] Length = 75 Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F + R R+E +Q+++ G ++++ +E G+ I+++N++ L L Sbjct: 4 REKFGADVRARREELGFSQEQLAELAGMHRTYVGSIERGERNISLENIVKLCEALQIKPS 63 Query: 79 KLL 81 L+ Sbjct: 64 SLM 66 >gi|299534387|ref|ZP_07047722.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298730151|gb|EFI70691.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 116 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +N + IRK KLTQ+E+ + G S+++ +E G I + + L+ Sbjct: 6 KLVGSNIKEIRKLKKLTQEELAEKCGLQASYLAGVERGDRNFTIQTLEKITEGLEVAPSS 65 Query: 80 LLK 82 + K Sbjct: 66 IFK 68 >gi|167744431|ref|ZP_02417205.1| transcriptional regulator [Burkholderia pseudomallei 14] gi|167897070|ref|ZP_02484472.1| transcriptional regulator [Burkholderia pseudomallei 7894] Length = 93 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ + P D R + N R +R + +Q+ + G ++++S +E + + Sbjct: 5 PKPPTELPSPDDL----RGVLAFNVRLLRVQRGWSQERLALECGLDRTYVSAVERSRWNV 60 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 ++ N+ +A L+ W LLKP Sbjct: 61 SLSNIEAIAKALEVQPWALLKP 82 >gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus sp. 18P13] Length = 110 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I RN R + L+Q+++ G ++I +LE G+ ++++ +A +D L + Sbjct: 6 KIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMDISLSE 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|254673014|emb|CBA07557.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 137 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 50 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 109 Query: 79 KLLKP 83 +LL P Sbjct: 110 QLLLP 114 >gi|78186562|ref|YP_374605.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166464|gb|ABB23562.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 101 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 H + E++ R R A TQ+++ R+G + ++I +E G+ I I N Sbjct: 11 ALNHQQNKSPAEKL--GLKIRIARIMASYTQEKLAVRSGLSMAYIGMIERGEKNITILNC 68 Query: 67 IILAHTLDTPLWKLL 81 LA LD + LL Sbjct: 69 HKLAKALDITIGDLL 83 >gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] Length = 110 Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +N R +RK +Q+E+ + ++ E+E G ++D+++ +A+ L P+ Sbjct: 8 RQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIA 67 Query: 79 KLL 81 +L Sbjct: 68 ELF 70 >gi|261866843|ref|YP_003254765.1| XRE family transcriptional regulator [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412175|gb|ACX81546.1| transcriptional regulator, XRE family [Aggregatibacter actinomycetemcomitans D11S-1] Length = 70 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ L+Q+ + +S+I +E G+ I++ N+ + L+ + Sbjct: 10 FGKKVKELRKQKGLSQEALALLCDLDRSYIGGVERGERNISLINIYKITLALNIDIKDFF 69 >gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 108 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R++R K+TQ+E+ RT + +IS++E I+++ + + L+ PL P Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVPLSDFFLP 69 >gi|53718395|ref|YP_107381.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52208809|emb|CAH34748.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 102 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N + IR ++Q+E+ +R G +++IS++E + +++DN+ +LA L Sbjct: 13 RNRLSRNLKRIRAAQNISQEELGDRAGLHRTYISQVERTVTNVSLDNIYLLAEALGVDPA 72 Query: 79 KLL 81 +LL Sbjct: 73 ELL 75 >gi|256821176|ref|YP_003142375.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799156|gb|ACV29810.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 78 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + R E L+Q+ ++GF +++IS LE K +I +DN+ +A L+ + Sbjct: 5 EVFSKNVKKYRNEMGLSQEAFAEKSGFYRTYISALECKKRSIALDNVQKIADALEIETYL 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 112 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK+ +Q+++ R S++ ++E G+ + +D + +AH L PL +L+ Sbjct: 9 GENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQCPLEQLV 67 >gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681] gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa E681] Length = 114 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R IRK LTQ+++ +G ++I +E G+ +ID + + L+ + Sbjct: 5 RDSVGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGERNFSIDTLEKVLTALNVSIS 64 Query: 79 KLL 81 +L+ Sbjct: 65 ELM 67 >gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 176 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 4 GEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62 >gi|225573403|ref|ZP_03782158.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] gi|225039213|gb|EEG49459.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] Length = 75 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F NN R R+ +Q+E ++++ +E G+ +I I+ ++A L + L Sbjct: 11 FGNNLRKFREAKGCSQEEFAEICKISRAYYGRIERGEHSITIEKCALIAQALGIHISVLF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 70 Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RKE L+Q+E G ++++S +E G ++ + LA L + +L Sbjct: 8 FGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGVRNPSLAVIETLAGALGIRVEELF 67 Query: 82 K 82 + Sbjct: 68 R 68 >gi|217980119|ref|YP_002364169.1| helix-turn-helix domain protein [Thauera sp. MZ1T] gi|217508290|gb|ACK55075.1| helix-turn-helix domain protein [Thauera sp. MZ1T] Length = 82 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 R + N R+E +Q+++ +G +S+I+ +E I++DN+ Sbjct: 5 HPTPQDSPAARAVLSANLVRFRRERGWSQEKLAFESGLDRSFIAHVERQARNISLDNIER 64 Query: 69 LAHTLDTPLWKLLKP 83 LA TL P LL P Sbjct: 65 LARTLGVPFHVLLTP 79 >gi|303326711|ref|ZP_07357153.1| BamHI control element [Desulfovibrio sp. 3_1_syn3] gi|302862699|gb|EFL85631.1| BamHI control element [Desulfovibrio sp. 3_1_syn3] Length = 83 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R+ ++Q+++ R G +++I +E G+ +++ N++ +A L + Sbjct: 13 KQFGAALGAKREALHISQEKLAERAGLHRTYIGGVEQGRRNLSLLNIVKIATALGVNPEE 72 Query: 80 LL 81 Sbjct: 73 FF 74 >gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 113 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +RK+ LTQ+E+ + Q++I +E G+ I++ + +A L+ ++ Sbjct: 1 MVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEV 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|153004060|ref|YP_001378385.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027633|gb|ABS25401.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5] Length = 68 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R + KL+QK + ++ G + S++S LE G+ + ++ + +A L P LL Sbjct: 7 FAGNVRRLRAKKKLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPANLL 66 >gi|307067495|ref|YP_003876461.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|306409032|gb|ADM84459.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 156 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R +R TQ+ G +++I+++E GK I+I+N+ +A L L Sbjct: 3 KKELGQEIRKLRTARGFTQETFSKACGLDRTYIADVELGKRNISIENIDKIAKGLAITLP 62 Query: 79 KLLK 82 +L K Sbjct: 63 ELFK 66 >gi|148252780|ref|YP_001237365.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404953|gb|ABQ33459.1| Putative HTH-type transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 75 Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 36/72 (50%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 L A+ R + N R IR++ ++TQ+++ +++ +E GK ++ M + Sbjct: 2 VLDPAMQDWRAVLGRNVRKIRQQRRMTQEKLAFEAEIDLTYMGGIERGKRNPSLLVMARI 61 Query: 70 AHTLDTPLWKLL 81 A L PL KLL Sbjct: 62 AEALSVPLTKLL 73 >gi|313676043|ref|YP_004054039.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312942741|gb|ADR21931.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 81 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 L F + IR L+Q+E+ ++++ +E G+ ++I N+ +L Sbjct: 3 KKDLSPEEKFGATLKAIRLSKGLSQEELAFSANLHRTYVGSVERGERNVSIRNIFVLCEA 62 Query: 73 LDTPLWKLLK 82 LD + Sbjct: 63 LDIKPSDFFR 72 >gi|145219417|ref|YP_001130126.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205581|gb|ABP36624.1| putative transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 78 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R+ R +Q+++ + G +++I +E G+ I + N + L+ + L Sbjct: 1 MLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIVDALNLAMHDL 60 Query: 81 LK 82 +K Sbjct: 61 MK 62 >gi|120555195|ref|YP_959546.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325044|gb|ABM19359.1| putative transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 74 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R IRK +Q+ + + G +S++ ++E G+ I ++ + + A L+ Sbjct: 7 EAFGRNLRAIRKSKGFSQERLAHDAGIDRSYVGKIERGEVNITLEKIYVFAELLECSPKD 66 Query: 80 LL 81 L+ Sbjct: 67 LM 68 >gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 116 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R IRK LTQ ++ + F S+I +E G+ ++++N+ +A L L Sbjct: 6 ELVGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKL 63 >gi|330941285|gb|EGH44146.1| hypothetical protein PSYPI_17842 [Pseudomonas syringae pv. pisi str. 1704B] Length = 77 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N R R E L+Q+ + R G ++++ LE + I N+ +A L+ L Sbjct: 13 IFAANVRRRRLELGLSQEALAERAGVHRTYVGMLERSEKNCTIYNIERIAQALNVDPELL 72 Query: 81 LK 82 LK Sbjct: 73 LK 74 >gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 69 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R + L+QK + ++ G + S++S LE G+ + ++ + +A L P LL Sbjct: 7 FAGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALL 66 >gi|47459180|ref|YP_016042.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] gi|47458509|gb|AAT27831.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] Length = 361 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK +++QKE+ TG + IS +E G +D + ++ L+ L +LL Sbjct: 8 FGTRLKELRKSKQISQKELSESTGIVREQISRIENGLVNPTLDTLHKISLALNIFLHELL 67 >gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 180 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R + LTQ+E+ RT ++ +IS+LE S+ ++D + L P Sbjct: 4 GHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAADFF 62 >gi|300691138|ref|YP_003752133.1| HTH-type transcriptional regulator [Ralstonia solanacearum PSI07] gi|299078198|emb|CBJ50841.1| putative HTH-type transcriptional regulator [Ralstonia solanacearum PSI07] Length = 93 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M + + L R + N R +R +Q+ + G ++++S +E + Sbjct: 1 MSAKPKPPTELPAPNDL-RGVLAFNVRLLRVGRGWSQERLALECGLDRTYVSAVERSRWN 59 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 +++ N+ +A L+ W LLKP Sbjct: 60 VSLSNIEAIAKALEVQPWALLKP 82 >gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 91 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ LL Sbjct: 8 FGAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEHLL 67 Query: 82 KP 83 P Sbjct: 68 TP 69 >gi|254497907|ref|ZP_05110672.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352905|gb|EET11675.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 78 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + N R +RK +Q+ + +G +S++ +E G+ I N+I +A L+ Sbjct: 5 PQLLKLGNKIREMRKAHGFSQEAFASESGVDRSYMGSVERGERNIAALNLIKIAQALNVE 64 Query: 77 LWKLLKP 83 + +L P Sbjct: 65 VGELFPP 71 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RK LTQ+E+ RT ++ +IS++E+G+S+ ++++ + + L T K Sbjct: 4 GQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPELFFK 63 >gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45] gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45] Length = 213 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Query: 1 MPRRKRDEPHLSDA----ILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53 MP +KR + RE+ + R +RK ++T ++ +TG + +S+ Sbjct: 1 MPIKKRSAALSQNPHAVGEPREKNLEVAIGRQVRELRKRQRMTGGDLAGKTGLSVGMLSK 60 Query: 54 LETGKSTINIDNMIILAHTLDTPLWKLL 81 +E G + +++ M LA+ L PL +L Sbjct: 61 IENGVISPSLNTMSALANALGVPLVQLF 88 >gi|167563774|ref|ZP_02356690.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] Length = 81 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F +RK +Q+++ +G A+S++ +E G+ I + N+ +LA TL+ Sbjct: 6 RELFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLEVVPS 65 Query: 79 KLL 81 +L Sbjct: 66 DML 68 >gi|186685408|ref|YP_001868604.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467860|gb|ACC83661.1| putative transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 87 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L + F R R+E L+Q+++ R +++IS LE G+ +++ M LA Sbjct: 2 SEKNELSIKQRFGKAVRRRRRELDLSQEQLAERAELHRTYISNLERGELNPSLETMEKLA 61 Query: 71 HTLDTPLWKLL 81 + L+ + + Sbjct: 62 NALNISIPAMF 72 >gi|169344358|ref|ZP_02865331.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297483|gb|EDS79590.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 105 Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 23 VNNFRNIRKEA--KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + IRK K+TQ+++ TG ++S++S++E + ++D I LA LD + L Sbjct: 4 GTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTVNDL 63 Query: 81 L 81 + Sbjct: 64 V 64 >gi|119383973|ref|YP_915029.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373740|gb|ABL69333.1| putative transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 85 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK +L+Q+E+ R G + +IS LE+GK ++ M LA LDT L ++ Sbjct: 16 YARVLRRHRKNMELSQEELAFRAGLSMRYISLLESGKHQPSLGTMKALADALDTSLTAMI 75 >gi|323650445|gb|ADX97299.1| C.ClaIP [Caryophanon latum] Length = 101 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Query: 6 RDEPHLSDAILRE-------RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R + +D IL + + F N + +R++ +LTQ + +S+I +E G+ Sbjct: 4 RSMKNDNDVILTQEIKRIEFQKAFGKNIKRLRQQQELTQDRLGYLAELDRSYIGGIERGE 63 Query: 59 STINIDNMIILAHTLDTPLWKLL 81 + + N+ +A L + L Sbjct: 64 RNVCLSNIKRIADALKVSVNDLF 86 >gi|127514418|ref|YP_001095615.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126639713|gb|ABO25356.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 76 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IR + +L+Q+++ +++IS +E G + + N++ LA+ L LL Sbjct: 8 FGQRLKQIRTQQRLSQEQLAEICELDRTYISGIERGVRNVALINIVKLANGLKVSASSLL 67 Query: 82 K 82 + Sbjct: 68 E 68 >gi|308229525|gb|ADO24176.1| C.AflIIIP [Anabaena flos-aquae CCAP 1403/13F] Length = 78 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK KL+Q E+ ++ +++I +E G+ I++ N+ LA L L Sbjct: 8 FGIRVRYFRKSLKLSQDELAEKSDLHRTYIGAVERGERNISLMNIFRLADALQVTAKDLF 67 >gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] Length = 188 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 16 GEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 74 >gi|83944721|ref|ZP_00957087.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83851503|gb|EAP89358.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N + R++A L+Q + +R G ++ IS +E G+ + I + +A LD Sbjct: 4 REVFGANLQYFREKAGLSQAALADRMGVDRAHISAMERGQQNVTIITLWHVAEALDVKPA 63 Query: 79 KLL 81 +LL Sbjct: 64 ELL 66 >gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 175 Score = 65.4 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + + +R++ ++ ++ G A+S +S LE G +D + LA LD P +L Sbjct: 8 ILGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQL 67 Query: 81 LKP 83 ++P Sbjct: 68 VQP 70 >gi|258591602|emb|CBE67903.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 71 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R ++Q+E+ R G ++++ +E G+ I + N++ A LD P+ L+ Sbjct: 9 FGQKVRQRRLSLAISQEELAERAGVHRTYVGMIERGEKNITLRNIVKFAKALDMPVHNLM 68 Query: 82 K 82 K Sbjct: 69 K 69 >gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 459 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ L+Q+E+ + G ++ +S+ E +S+ + DN+I LA L +L+ Sbjct: 5 VAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAESSPDTDNLIALAKLYGMTLDELV 64 >gi|224541773|ref|ZP_03682312.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM 15897] gi|224525300|gb|EEF94405.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM 15897] Length = 68 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R + ++Q+E+ R ++++IS++E G +++ + A L L +L Sbjct: 7 FGMRIKELRVQQGISQEELGFRCHLSKNYISDVERGTRNVSLKAIDQFAKGLGITLKELF 66 >gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 242 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F +N RK+ L+Q+E+ R G ++ +S+ E+G+ST ++ +I +A L + Sbjct: 1 MMFNDNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFGISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|319937771|ref|ZP_08012174.1| transcriptional regulator Cro/CI family protein [Coprobacillus sp. 29_1] gi|319807206|gb|EFW03820.1| transcriptional regulator Cro/CI family protein [Coprobacillus sp. 29_1] Length = 75 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R ++Q+E+ R +++++S++E G + + + A L P+ L Sbjct: 8 FGRRVKELRLIQNISQEELAFRCQLSKNYVSDVERGTRNVTLKVVEKFAQGLKVPVHILF 67 Query: 82 K 82 + Sbjct: 68 R 68 >gi|161870051|ref|YP_001599220.1| transcriptional regulator [Neisseria meningitidis 053442] gi|161595604|gb|ABX73264.1| transcriptional regulator [Neisseria meningitidis 053442] Length = 117 Score = 65.4 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 30 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 89 Query: 79 KLLKP 83 +LL P Sbjct: 90 QLLLP 94 >gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] Length = 110 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R IRK L+Q+ + R G + + +S +ETG + +++ ++ LA LD Sbjct: 7 GQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALDV 59 >gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8] gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 176 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+E+ RT ++S+IS+LE+ K++ +ID + + L T L Sbjct: 4 GEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62 >gi|293603331|ref|ZP_06685759.1| type I restriction-modification system S subunit [Achromobacter piechaudii ATCC 43553] gi|292818241|gb|EFF77294.1| type I restriction-modification system S subunit [Achromobacter piechaudii ATCC 43553] Length = 85 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 1 MPRRKRDEPHLSDAILR--ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M R + +S+ + +++F N R IRKE +LTQ+++ R G +++S +E G+ Sbjct: 1 MGARDKKNCGMSNPTQKYDAQVLFAANMRRIRKEKQLTQEQVAERAGLHPNYVSSVERGE 60 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 ++I N+ +A L + +L+ P Sbjct: 61 RNLSIANIARIAAALGVTMAELVTP 85 >gi|91778552|ref|YP_553760.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691212|gb|ABE34410.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ LL Sbjct: 8 FGATVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEHLL 67 Query: 82 KP 83 P Sbjct: 68 TP 69 >gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] Length = 238 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++R+ +Q+ + + G ++ +S+ E +S+ + +N+I LA L +LL Sbjct: 6 AQRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAESSPDTENLISLAKLYGVSLDELLN 65 Query: 83 P 83 P Sbjct: 66 P 66 >gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] Length = 183 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R + +L+Q+E+ R G ++ I+ LETG I++ + +A+ LD +L+ Sbjct: 11 VGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIANALDVNFKQLV 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|87198393|ref|YP_495650.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134074|gb|ABD24816.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 76 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N + R+ A L+Q EI R G ++++S +E G + ++ +A L+ Sbjct: 4 RKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVRPV 63 Query: 79 KLLK 82 LL+ Sbjct: 64 ALLE 67 >gi|83749268|ref|ZP_00946267.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|207725182|ref|YP_002255578.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|207743555|ref|YP_002259947.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] gi|83724049|gb|EAP71228.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|206590416|emb|CAQ37378.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|206594954|emb|CAQ61881.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] Length = 113 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R P I + R A +Q+ + +++IS +E G + + Sbjct: 8 KRPDSSPSHPAPISVA---LGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPS 64 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 ++ + + H L L +L P Sbjct: 65 VETLANICHCLGVTLSELFAP 85 >gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R +R+E+ LTQ+++ TG +S+++++E G ID M +A L L Sbjct: 6 RKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65 Query: 79 KLLK 82 +L + Sbjct: 66 QLFE 69 >gi|209516038|ref|ZP_03264898.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209503498|gb|EEA03494.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 78 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 D LR R+ + R +R E ++Q+ + + GF ++++S +E + I +DN+ Sbjct: 6 SKDIDPYLRRRL--AEHVRRLRLEKGISQELLSVQCGFHRTYVSHIERAATNITLDNLQK 63 Query: 69 LAHTLDTPLWKLL 81 LA L +LL Sbjct: 64 LALGLGVDPAELL 76 >gi|169351502|ref|ZP_02868440.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] gi|169291724|gb|EDS73857.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] Length = 73 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R + ++Q+E+ R G ++++IS++E G I++ ++ +A L + +L Sbjct: 11 FGQRVKELRLKQNISQEELAFRCGLSKNYISDVERGTRNISLKSIEKIADGLAIRIKELF 70 Query: 82 K 82 + Sbjct: 71 E 71 >gi|304320305|ref|YP_003853948.1| putative transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303299207|gb|ADM08806.1| putative transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 79 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R I N R R E L+Q E+ R + ++I +E +++++ID + +A L L Sbjct: 3 ARDIVARNVRKRRAELGLSQDEVGARADSSGNYIGMIERSETSVSIDMLADIAEVLGVSL 62 Query: 78 WKLLKP 83 L+ P Sbjct: 63 RDLVDP 68 >gi|167725601|ref|ZP_02408837.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei DM98] Length = 83 Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R L+Q+E+ G +++IS++E + +++DN+ LA LD Sbjct: 18 RDVLAYNIRASRVAKSLSQEELGFAAGLDRTFISQVERARVNVSVDNIERLAIALDVDPA 77 Query: 79 KLLK 82 +L + Sbjct: 78 QLFE 81 >gi|295107606|emb|CBL05149.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 65.0 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R + +RK +++QK++ + + ++SE+E G S I+++ + +A L P Sbjct: 6 KRRQLGQHIVEMRKAQRISQKQLALMSDINKGYLSEIENGISNISVNKLFRIADALGVPP 65 Query: 78 WKLL 81 L Sbjct: 66 MDLF 69 >gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 68 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I R+ RK LTQKE+ + G ++S +++ E+GK + ID ++ +A+ L Sbjct: 5 KQITSTQIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFS 64 Query: 79 KLL 81 LL Sbjct: 65 TLL 67 >gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus JCSC1435] gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N RN+R++ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T Sbjct: 1 MQIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSPSD 60 Query: 80 LLK 82 K Sbjct: 61 FFK 63 >gi|297620902|ref|YP_003709039.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297376203|gb|ADI38033.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 76 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D IL + F RN+R LTQ+++ R GF ++I +E + ++ ++ L+ Sbjct: 8 DPILVD---FAAKVRNMRHSIPLTQEQLAERAGFHVNYIGGIERAERNPSLTSLCSLSKA 64 Query: 73 LDTPLWKLL 81 L PL +LL Sbjct: 65 LGCPLKELL 73 >gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 187 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R L+ + R G + +SELE G + + LA+TL P+ Sbjct: 7 RAAVGERLRSARTAHGLSVGALAARAGIGKGSLSELENGSRNPTLSTLYALANTLGLPVS 66 Query: 79 KLL 81 LL Sbjct: 67 HLL 69 >gi|121594174|ref|YP_986070.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|120606254|gb|ABM41994.1| transcriptional regulator, XRE family [Acidovorax sp. JS42] Length = 86 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP R P A +++F R R+ LTQ+ + R +++S +E G+ Sbjct: 1 MPSRHPKAPSKEKA----QVVFGATLRGFREAQALTQEALAERADLHTNYVSSVERGERN 56 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 +++ N++ LA+ LD + LL+P Sbjct: 57 LSLHNIVRLAYALDMEVSALLRP 79 >gi|325830940|ref|ZP_08164293.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] gi|325487102|gb|EGC89547.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] Length = 77 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ + +++R E L+Q+ R G + ++++++E G ++IDNM +A Sbjct: 11 RVQYGLRIKDLRDERGLSQRGFAARIGMSPTYLADVERGARNVSIDNMKRIADGFGVTFH 70 Query: 79 KL 80 ++ Sbjct: 71 EM 72 >gi|29337279|gb|AAD39136.2|AF123569_4 NmeSIC [Neisseria meningitidis] Length = 71 Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R +Q+E+ + G +++I +E G+ I++ N+ +LA + + +L+ Sbjct: 8 FGKRVKHYRLLNGWSQEELAEKVGLHRTYIGSVERGERNISLLNISLLAKSFSINISELV 67 Query: 82 K 82 + Sbjct: 68 E 68 >gi|167830187|ref|ZP_02461658.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] Length = 83 Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R L+Q+E+ G +++IS++E + ++IDN+ LA LD Sbjct: 18 RDVLAYNIRANRVAKSLSQEELGFAAGLDRTFISQVERARVNVSIDNVERLAIALDVEPV 77 Query: 79 KLLK 82 +L + Sbjct: 78 RLFE 81 >gi|296284442|ref|ZP_06862440.1| transcriptional regulator, XRE family protein [Citromicrobium bathyomarinum JL354] Length = 86 Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R R + N + +R ++Q+++ +S++ +E ++D + +A L Sbjct: 1 MRGRELVGKNIKRLRVAQGISQEQLAFDASIDRSFLGGIERCDENPSVDTLDKIASVLSV 60 Query: 76 PLWKLLKP 83 + +L P Sbjct: 61 NIAELFVP 68 >gi|293371781|ref|ZP_06618191.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|292633233|gb|EFF51804.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] Length = 70 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R R L+Q+++ N ++++ ++E GK +++ +A L+ PL K Sbjct: 5 ELFGIRVREQRIALNLSQEKLANIADIDRTYLPDIENGKRNVSLAVAEKIAKALNVPLTK 64 Query: 80 LLK 82 LL+ Sbjct: 65 LLE 67 >gi|282892584|ref|ZP_06300857.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497708|gb|EFB40077.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 84 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+ ++Q+E+ R+G ++++ +E G+ ++I+N+ ILA L+ L+ Sbjct: 17 FGELVRQKRQALGISQEELAFRSGLHRTYVGSVERGERNLSIENVFILAKALECHPRDLI 76 >gi|126651901|ref|ZP_01724102.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] gi|126591369|gb|EAZ85477.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] Length = 119 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +N + IRK KLTQ+E+ + G S+++ +E G I I + + L+ Sbjct: 6 KLVGSNIKEIRKLKKLTQEELAEKCGLQTSYLAGVERGDRNITIQTLDKIIDGLEETPSN 65 Query: 80 LL 81 + Sbjct: 66 IF 67 >gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 91] Length = 113 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L +R F R +R+ +Q+++ G +S++ E+E G + +I + LA Sbjct: 21 TALVQR--FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAF 78 Query: 74 DTPLWKLLKP 83 P+ +LL P Sbjct: 79 GVPIARLLSP 88 >gi|224538886|ref|ZP_03679425.1| hypothetical protein BACCELL_03782 [Bacteroides cellulosilyticus DSM 14838] gi|224519493|gb|EEF88598.1| hypothetical protein BACCELL_03782 [Bacteroides cellulosilyticus DSM 14838] Length = 81 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+E ++Q+++ +++I LE + I ++I +A L+ PL KLL Sbjct: 15 LGKRIKFFREEKGVSQEQLAAICNVHRTYIGMLERAERNATIISIIKVAKGLNIPLVKLL 74 Query: 82 K 82 + Sbjct: 75 E 75 >gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R N R R +++Q+E+ G Q +IS +E G ++D + +A L Sbjct: 1 MPIRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGTRNPSMDLLYNIAGALKC 60 Query: 76 PLWKLL 81 P+ +L+ Sbjct: 61 PVKRLV 66 >gi|291544390|emb|CBL17499.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 470 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +L R V R E L+Q+++ R G +S I +E G +++D MI +A Sbjct: 4 KELLAARQSIVQKLTQARLEKGLSQEQLAKRIGTQRSNICRIEKGTQNLSLDLMIKIAEA 63 Query: 73 LDTPLWKLLK 82 LD + +L+ Sbjct: 64 LDKDVSVMLE 73 >gi|239996716|ref|ZP_04717240.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii ATCC 27126] Length = 175 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + + +R++ ++ ++ G A+S +S LE G +D + LA LD P +L Sbjct: 8 ILGRHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQL 67 Query: 81 LKP 83 ++P Sbjct: 68 VQP 70 >gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++ R +R+E+ LTQ+++ TG +S+++++E G ID M +A L L Sbjct: 6 RILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65 Query: 79 KLLK 82 +L + Sbjct: 66 QLFE 69 >gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 76 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +R E ++Q+E N G ++S+ E+ETGK + N+ +A L L Sbjct: 7 RSKIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETGKRNVAAVNLEKIAKGLGVSLA 66 Query: 79 KLL 81 + Sbjct: 67 EFF 69 >gi|239813615|ref|YP_002942525.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239800192|gb|ACS17259.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 90 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R +LTQ+++ + + ++IS++E G +++ N+ LAH L +LL Sbjct: 18 FGVAVRRLRDARELTQEQLADFSDMHVTYISQIERGLKNVSLFNIHRLAHALSVAPSELL 77 >gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +RK+ LTQ+E+ R Q++I +E G+ I++ + +A L+ K+ Sbjct: 1 MVGENIRILRKKRGLTQEELAERINLQQAYIGGIERGERNISMLTLQKIAVGLEISPDKI 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 180 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62 >gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E LTQ+E+ +R ++ +IS++E ++ +I ++ L L T L Sbjct: 4 GNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKDFF 62 >gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] Length = 186 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E LTQ+E+ +R ++ +IS++E ++ +I ++ L L T L Sbjct: 11 GNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKDFF 69 >gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 180 Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 62 >gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 197 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R R+E KL+ E+ R+G ++ +S++E G ID++ +A L + + Sbjct: 6 KLVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADALHLTMRR 65 Query: 80 LLK 82 L+ Sbjct: 66 LVT 68 >gi|110634674|ref|YP_674882.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285658|gb|ABG63717.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 100 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F +N R R A L+Q+ + R G ++ +S +E G + + + A + Sbjct: 4 RELFGSNLRRYRLAAGLSQEAVAERIGADRAHVSAMERGVQNVTLLTLWHTAQAVGVKPA 63 Query: 79 KLL 81 LL Sbjct: 64 DLL 66 >gi|13475102|ref|NP_106666.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025853|dbj|BAB52452.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 71 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N R +R++ KL+Q+ + + G +++IS LE ID + LA L+ Sbjct: 4 REVFARNLRRLREKKKLSQEALAHEAGVDRTYISALERSVYAATIDMVEKLATVLEVEPA 63 Query: 79 KLLKP 83 LL P Sbjct: 64 TLLDP 68 >gi|170754823|ref|YP_001782088.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120035|gb|ACA43871.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 81 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 33/51 (64%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IR+E ++Q ++ G ++S++SE+E+GK T ++D + +A L+ Sbjct: 4 NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEV 54 >gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 180 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 62 >gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 114 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + +R E KL+Q + + ++ IS+ ETG+ST +++N+I +A L L + Sbjct: 5 MIFSTQLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSLDE 64 Query: 80 LL 81 L+ Sbjct: 65 LV 66 >gi|325169000|ref|YP_004285747.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052813|dbj|BAJ83149.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 134 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 3 RRKRDEPHLSDAIL--RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +R + + +L ER +F N R R L+ ++ N +++I ++E GK Sbjct: 17 KRTSELSAIDGRVLKAPERFVFGANVRAGRNALGLSLTQMANLIDADRAYIGKVEHGKIN 76 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 ++ID M +A L++LL+P Sbjct: 77 VSIDRMSSIAELFRVHLYELLQP 99 >gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] Length = 180 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 62 >gi|83309581|ref|YP_419845.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944422|dbj|BAE49286.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 76 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N R +R + L+Q E+ ++S++++LETGK ++ + LA L+ Sbjct: 8 RELFATNLRRLRHDKGLSQDELACDAEMSRSYLAQLETGKYHASLKIIGRLADVLEVDPV 67 Query: 79 KLLK 82 + LK Sbjct: 68 EFLK 71 >gi|162148576|ref|YP_001603037.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787153|emb|CAP56745.1| putative transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 77 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N R +R+ A L+Q+ + R G +++IS +ETG+ + ++ + L+ Sbjct: 4 RGLFGANVRRLRRAAGLSQEVLAERMGVDRAYISWIETGRQNATLLSLWHASQALNVRPA 63 Query: 79 KLL 81 LL Sbjct: 64 ALL 66 >gi|316932216|ref|YP_004107198.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599930|gb|ADU42465.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 73 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R + KLTQ+E+ +R G + ++ +E G + ++ + +A L+ Sbjct: 4 KEVMARNLRRLRHDKKLTQEELADRAGLSMRYVGAIERGDVSASVTVLGQIADALEIEPG 63 Query: 79 KLLK 82 +LLK Sbjct: 64 ELLK 67 >gi|261380000|ref|ZP_05984573.1| DNA-binding protein [Neisseria subflava NJ9703] gi|284797205|gb|EFC52552.1| DNA-binding protein [Neisseria subflava NJ9703] Length = 98 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L D R I N R R +Q+E+ + G ++++S +E + I + N+ Sbjct: 9 PSLPDP-QDLRAIIAYNMRLYRVNHGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEK 67 Query: 69 LAHTLDTPLWKLLKP 83 +A L +KLL P Sbjct: 68 IASALKIAPYKLLLP 82 >gi|326404809|ref|YP_004284891.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325051671|dbj|BAJ82009.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 73 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R +R E ++Q+E+ +R ++++ +E + +D + LA L Sbjct: 4 REILARNMRRVRAERGISQEELAHRAKLNRNYVGMIEREEHAATVDTIDQLASALGVSPM 63 Query: 79 KLLKP 83 LL P Sbjct: 64 DLLDP 68 >gi|168207478|ref|ZP_02633483.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170661169|gb|EDT13852.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 93 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 23 VNNFRNIRKEA--KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + IRK K+TQ+++ TG ++S++S++E K ++D I L++ L L +L Sbjct: 4 GTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDIEHNKYNPSLDTTIALSNALGVTLNEL 63 >gi|167924589|ref|ZP_02511680.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] Length = 74 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK +Q+++ +G A+S++ +E G+ I + N+ +LA TL+ + Sbjct: 1 MFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVAPSDM 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|229526959|ref|ZP_04416356.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] gi|229335571|gb|EEO01051.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] Length = 70 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RKE L+Q+ + + G +S++ +E G I + + ++ L + L+ Sbjct: 9 FGEKVRQTRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDLI 68 >gi|153932832|ref|YP_001384724.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936860|ref|YP_001388245.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|152928876|gb|ABS34376.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932774|gb|ABS38273.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 81 Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 33/51 (64%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IR+E ++Q ++ G ++S++SE+E+GK T ++D + +A L+ Sbjct: 4 NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEV 54 >gi|158520953|ref|YP_001528823.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158509779|gb|ABW66746.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 84 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + IRK +Q+E+ +G+ +++IS LE GK + ++ + LA TL + Sbjct: 16 ELFGNALKQIRKRKGFSQEELGLESGYHRTYISLLERGKKSPSLKTIFRLAETLQVKPSE 75 Query: 80 LLK 82 L+K Sbjct: 76 LIK 78 >gi|330874491|gb|EGH08640.1| putative regulatory protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 74 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F IRK +Q+ + +G A+S++ +E G+ I + N+ LA L Sbjct: 6 RTAFGLRLIEIRKAKGWSQERLALESGLARSYLGGVERGQRNIALLNIYKLAEALAVTPG 65 Query: 79 KLLKP 83 L+ P Sbjct: 66 SLMDP 70 >gi|197103228|ref|YP_002128606.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196480504|gb|ACG80031.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 73 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R R EA L+Q+ + G ++++S LE G+ I + A L Sbjct: 4 RTIVGTNVRRYRGEAGLSQEGLAELMGVDRAYVSGLELGRRNPTILTLWHTAMALKIRPS 63 Query: 79 KLLK 82 +LL+ Sbjct: 64 ELLE 67 >gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine transporter [Melissococcus plutonius ATCC 35311] Length = 180 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RN+R + LTQ+E+ RT + +IS+LE S+ +++ + L + Sbjct: 4 GDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLSSPSMETFFTILEVLGVSPEEFF 62 >gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] Length = 178 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R IRK +T +++ +TGF +S+IS++E GK++ +I ++ + L + + Sbjct: 1 MSYGAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISE 60 Query: 80 LLK 82 L + Sbjct: 61 LFE 63 >gi|114327259|ref|YP_744416.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315433|gb|ABI61493.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 73 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R ++TQ+E+ +R G + +I +E +++I + +A L Sbjct: 4 KEVMAVNVRRVRHAREMTQEELADRAGLSTRYIGAIERADVSVSITVLGRIAEALGVEPG 63 Query: 79 KLLK 82 LL Sbjct: 64 TLLT 67 >gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 242 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R+E +Q+E+ R G ++ +S+ E +S+ + N+I LA L LL+ Sbjct: 16 AQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVSLDDLLR 75 >gi|78187740|ref|YP_375783.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167642|gb|ABB24740.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 390 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R +Q+++ G +++I +E G+ I + N +A+ L L + Sbjct: 12 LLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHVTLSDI 71 Query: 81 L 81 L Sbjct: 72 L 72 >gi|240948259|ref|ZP_04752645.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297298|gb|EER47839.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 75 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 18 ERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ER +F+ N + R L+Q+E+ R G +++I +E + I + N+ ++A L Sbjct: 5 ERELFLKNLGLSIKLERVRRGLSQEELAERAGLHRTYIGMVERAERNITVVNLALIAKAL 64 Query: 74 DTPLWKLL 81 + LL Sbjct: 65 GVSIGSLL 72 >gi|150377506|ref|YP_001314101.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032053|gb|ABR64168.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 74 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF N R +R +Q+E+ +R ++++S LE + + ID + LA L Sbjct: 4 RDIFALNLRTLRHARGYSQEELADRANIHRTYVSALERCQYSATIDMVASLAKVLGVDAA 63 Query: 79 KLLK 82 LL+ Sbjct: 64 ALLR 67 >gi|328947447|ref|YP_004364784.1| hypothetical protein Tresu_0542 [Treponema succinifaciens DSM 2489] gi|328447771|gb|AEB13487.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 71 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R E +Q++ + T ++++S LE GK + ++ +A +L+ + L Sbjct: 12 FGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERGKRNPSYLILLKIAKSLNISVKDLF 71 >gi|92112332|ref|YP_572260.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795422|gb|ABE57561.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 190 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ A L+Q+ + R G ++ + +E G +++ + LA L + L+ Sbjct: 18 VAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGVLFYALV 77 Query: 82 KP 83 +P Sbjct: 78 QP 79 >gi|325971067|ref|YP_004247258.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026305|gb|ADY13064.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 107 Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + R++ LTQ ++ + G + S+++E+ET + + + ++ LD P W Sbjct: 10 IFARNLKERRRKLSLTQAQLAEKIGVSTSFVTEIETSRKAPSFATIEKISAALDVPCWTF 69 Query: 81 L 81 Sbjct: 70 F 70 >gi|194098577|ref|YP_002001639.1| putative transcriptional regulator [Neisseria gonorrhoeae NCCP11945] gi|254493745|ref|ZP_05106916.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260440556|ref|ZP_05794372.1| putative transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|268594802|ref|ZP_06128969.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268598958|ref|ZP_06133125.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601311|ref|ZP_06135478.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603637|ref|ZP_06137804.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268682112|ref|ZP_06148974.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268684322|ref|ZP_06151184.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268686580|ref|ZP_06153442.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043861|ref|ZP_06569577.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399073|ref|ZP_06643238.1| transcriptional regulator [Neisseria gonorrhoeae F62] gi|193933867|gb|ACF29691.1| putative transcriptional regulator [Neisseria gonorrhoeae NCCP11945] gi|226512785|gb|EEH62130.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268548191|gb|EEZ43609.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268583089|gb|EEZ47765.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585442|gb|EEZ50118.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587768|gb|EEZ52444.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622396|gb|EEZ54796.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268624606|gb|EEZ57006.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|268626864|gb|EEZ59264.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012324|gb|EFE04313.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610487|gb|EFF39597.1| transcriptional regulator [Neisseria gonorrhoeae F62] gi|317164249|gb|ADV07790.1| putative transcriptional regulator [Neisseria gonorrhoeae TCDC-NG08107] Length = 106 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLLP 83 >gi|209885576|ref|YP_002289433.1| hypothetical protein OCAR_6455 [Oligotropha carboxidovorans OM5] gi|209873772|gb|ACI93568.1| conserved domain protein [Oligotropha carboxidovorans OM5] Length = 71 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R + KLTQ+E+ R+G + ++ +E G + ++ + +A L Sbjct: 4 KEVMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSVLGKVADALGVDPC 63 Query: 79 KLLK 82 L++ Sbjct: 64 DLIR 67 >gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum] gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum] Length = 81 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 17 RERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ I R++RK ++Q+E+ + +G ++++S +E G+ I++ N++ LA L Sbjct: 3 PDKKILIQLGGRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVL 62 Query: 74 DTPLWKLLK 82 L+ Sbjct: 63 GVDAGDLVT 71 >gi|59801211|ref|YP_207923.1| putative transcriptional regulator [Neisseria gonorrhoeae FA 1090] gi|239998956|ref|ZP_04718880.1| putative transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|240014132|ref|ZP_04721045.1| putative transcriptional regulator [Neisseria gonorrhoeae DGI18] gi|240016567|ref|ZP_04723107.1| putative transcriptional regulator [Neisseria gonorrhoeae FA6140] gi|240112875|ref|ZP_04727365.1| putative transcriptional regulator [Neisseria gonorrhoeae MS11] gi|240115631|ref|ZP_04729693.1| putative transcriptional regulator [Neisseria gonorrhoeae PID18] gi|240117924|ref|ZP_04731986.1| putative transcriptional regulator [Neisseria gonorrhoeae PID1] gi|240121694|ref|ZP_04734656.1| putative transcriptional regulator [Neisseria gonorrhoeae PID24-1] gi|240123483|ref|ZP_04736439.1| putative transcriptional regulator [Neisseria gonorrhoeae PID332] gi|240125727|ref|ZP_04738613.1| putative transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|240128182|ref|ZP_04740843.1| putative transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|59718106|gb|AAW89511.1| putative transcriptional regulator [Neisseria gonorrhoeae FA 1090] Length = 105 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77 Query: 79 KLLKP 83 +LL P Sbjct: 78 QLLLP 82 >gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e] Length = 88 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ +LL Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 86 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RKE LTQ+ + +RTG +++I+ +ETGK I++ N+ LA L L L Sbjct: 15 FGRAIQQRRKELNLTQENLAHRTGLDRTYIANIETGKINISLRNIEKLAKGLSISLSDLF 74 Query: 82 K 82 K Sbjct: 75 K 75 >gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] Length = 201 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R + LTQ+E+ RT + +IS+LE S+ +++ + L + + Sbjct: 25 GEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 84 >gi|73540702|ref|YP_295222.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|72118115|gb|AAZ60378.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 129 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK +Q+ + +G A+S++S +E GK + + N+ +LA TL P ++L Sbjct: 9 FGLHLARLRKRRGWSQETLSLESGLARSYLSGIERGKRNLALLNICMLADTLGVPPSEML 68 >gi|145219415|ref|YP_001130124.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205579|gb|ABP36622.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 379 Score = 63.9 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R +Q+++ G +++I +E G+ I + N +A+ L L + Sbjct: 12 LLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHITLADI 71 Query: 81 L 81 L Sbjct: 72 L 72 >gi|326402562|ref|YP_004282643.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325049423|dbj|BAJ79761.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 94 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF N R+ R A L+Q+ + R G ++ +S +E G + + + LA L Sbjct: 4 RRIFGANLRHYRLAAGLSQEAVAERMGVDRAHVSSMERGSQNVTLITLWHLADALKIQPA 63 Query: 79 KLL 81 LL Sbjct: 64 DLL 66 >gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E+ L+Q+ + + G + ++S++E G+++ ++ ++ LA L +LL Sbjct: 4 VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLL 63 Query: 82 K 82 + Sbjct: 64 Q 64 >gi|152851|gb|AAA26568.1| C protein [Serratia marcescens] Length = 84 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N R+ R L+Q+++ +G +++I +E + + + +IIL L+T + Sbjct: 12 KEILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILRKALNTSVP 71 Query: 79 KLLK 82 KLL Sbjct: 72 KLLT 75 >gi|329888372|ref|ZP_08266970.1| pvuIIC [Brevundimonas diminuta ATCC 11568] gi|328846928|gb|EGF96490.1| pvuIIC [Brevundimonas diminuta ATCC 11568] Length = 73 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R ++Q+E+ R +S++S +E G +++ + LA L L Sbjct: 6 LLGRNIRRHRNALGISQEELAFRADMKRSYVSGIELGSRKPSVEALERLAIALGVDPRIL 65 Query: 81 LKP 83 L+P Sbjct: 66 LEP 68 >gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum] gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum] Length = 81 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 17 RERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ I R++RK ++Q+E+ + +G ++++S +E G+ I++ N++ LA L Sbjct: 3 PDKKILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVL 62 Query: 74 DTPLWKLLK 82 L+ Sbjct: 63 GVDAGDLVT 71 >gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT] gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT] Length = 147 Score = 63.5 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R RKE LTQ E+ +T A + I E G + + +A L P+++L Sbjct: 3 VGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPVYRL 61 >gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330] gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330] Length = 213 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 37 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 95 >gi|121634901|ref|YP_975146.1| transcriptional regulator [Neisseria meningitidis FAM18] gi|261401339|ref|ZP_05987464.1| DNA-binding protein [Neisseria lactamica ATCC 23970] gi|296314425|ref|ZP_06864366.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768] gi|120866607|emb|CAM10358.1| putative transcriptional regulator [Neisseria meningitidis FAM18] gi|269208625|gb|EEZ75080.1| DNA-binding protein [Neisseria lactamica ATCC 23970] gi|296838861|gb|EFH22799.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768] gi|309378463|emb|CBX22888.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 106 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLLP 83 >gi|260425441|ref|ZP_05779421.1| conserved domain protein [Citreicella sp. SE45] gi|260423381|gb|EEX16631.1| conserved domain protein [Citreicella sp. SE45] Length = 76 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R + N R +R E +Q+ + G ++++S +E + I+IDN+ +A L Sbjct: 5 PKSPLRDVLARNMRLLRAEKGWSQERLAEEAGLNRTYLSAVERSEQNISIDNLYRVAKGL 64 Query: 74 DTPLWKLLK 82 LL Sbjct: 65 GVDAHTLLT 73 >gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 201 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + D L DA+L + + R +RKE +LT + + G + IS++E G + Sbjct: 5 KPNDNKALVDAMLGD---LGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGNPSF 61 Query: 64 DNMIILAHTLDTPLWKLLK 82 ++ LAH L P+ +LL+ Sbjct: 62 ATLVQLAHGLQMPIGQLLE 80 >gi|225575186|ref|ZP_03783796.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM 10507] gi|225037594|gb|EEG47840.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM 10507] Length = 89 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + R+ +TQ+ + G +++IS LE G++ + M LA L + L Sbjct: 15 LFGNNLSHYRRLCGMTQEALGRAVGMNRTYISALEHGRANPTLKLMSTLAIALKVDVGNL 74 Query: 81 LK 82 L Sbjct: 75 LT 76 >gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334] Length = 108 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R++R K+TQ+E+ RT + +IS++E I+++ + + L+ L P Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVTLSDFFLP 69 >gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 380 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A L+Q+ + R G ++ +S+ E +S+ + DN+I LA L LL Sbjct: 6 AQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDLL 64 >gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 380 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A L+Q+ + R G ++ +S+ E +S+ + DN+I LA L LL Sbjct: 6 AQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDLL 64 >gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 145 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F R IR+ +Q+E+ R G + IS +E K ++D LA L PL Sbjct: 2 KDSFGARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVPLQ 61 Query: 79 KLLKP 83 L P Sbjct: 62 VLCDP 66 >gi|160939992|ref|ZP_02087337.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] gi|158436572|gb|EDP14339.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] Length = 74 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ N R +RKE L+Q+ + + G +++I+ +E GK ++I ++ + LD + Sbjct: 8 RIKVGNRIRQLRKELLLSQESLAFKAGLDRTYIASVENGKRNLSIMSLEKIIVALDCSMA 67 Query: 79 KLLK 82 + + Sbjct: 68 EFFE 71 >gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + L+Q+++ +G + ISE+E G+S + M L L + + Sbjct: 8 LLGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKEF 67 Query: 81 L 81 Sbjct: 68 F 68 >gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8] gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis AR01/DG] gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8] gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ARO1/DG] gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis 62] gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 180 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62 >gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 180 Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62 >gi|261392524|emb|CAX50079.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] Length = 106 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLLP 83 >gi|241759247|ref|ZP_04757353.1| transcriptional regulator [Neisseria flavescens SK114] gi|241320383|gb|EER56680.1| transcriptional regulator [Neisseria flavescens SK114] Length = 98 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P+L D R + N R R +Q+E+ + G ++++S +E + I + N+ Sbjct: 9 PNLPDP-QDLRAVIAYNMRLYRVNHGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEK 67 Query: 69 LAHTLDTPLWKLLKP 83 +A L +KLL P Sbjct: 68 IASALKIAPYKLLLP 82 >gi|325128248|gb|EGC51133.1| DNA-binding protein [Neisseria meningitidis N1568] gi|325134544|gb|EGC57189.1| DNA-binding protein [Neisseria meningitidis M13399] gi|325144646|gb|EGC66945.1| DNA-binding protein [Neisseria meningitidis M01-240013] Length = 105 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77 Query: 79 KLLKP 83 +LL P Sbjct: 78 QLLLP 82 >gi|312888142|ref|ZP_07747725.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299409|gb|EFQ76495.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 69 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR++ ++QK++ +S+I+ +E G+ I+I N+ +A L L +L Sbjct: 7 VGSRIREIREKNGISQKDLSYTADLDRSYIASVENGQRNISIVNLEKIAKALKVNLSELF 66 Query: 82 K 82 + Sbjct: 67 Q 67 >gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 95 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ +LL Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 82 KP 83 P Sbjct: 68 TP 69 >gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 180 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + Sbjct: 4 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62 >gi|254003130|ref|YP_003052596.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|253987213|gb|ACT52069.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] Length = 77 Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R F R IR ++ TQ+ + +G +S+IS +E G+S+ +D ++ L LD L Sbjct: 4 KRRSFGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALDISL 63 Query: 78 WKL 80 L Sbjct: 64 SYL 66 >gi|167648095|ref|YP_001685758.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350525|gb|ABZ73260.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 78 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 14 AILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + R+ N R +RKE L+Q+ + + G A +++ ++E G +D + A Sbjct: 2 PLPPMRLGQALGINVRRLRKERGLSQEALADAVGLAPTYVGQIERGLRNPTLDVVERFAD 61 Query: 72 TLDTPLWKLLK 82 L LL+ Sbjct: 62 VLGAEALDLLR 72 >gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 14] gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 7894] gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei NCTC 13177] gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH] gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU] gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain [Burkholderia pseudomallei 1710b] gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH] gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 94 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ +LL Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|15677077|ref|NP_274229.1| transcriptional regulator [Neisseria meningitidis MC58] gi|218768217|ref|YP_002342729.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|254804990|ref|YP_003083211.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|304387532|ref|ZP_07369721.1| DNA-binding protein [Neisseria meningitidis ATCC 13091] gi|313668311|ref|YP_004048595.1| transcriptional regulator [Neisseria lactamica ST-640] gi|7226441|gb|AAF41586.1| transcriptional regulator [Neisseria meningitidis MC58] gi|121052225|emb|CAM08548.1| putative transcriptional regulator [Neisseria meningitidis Z2491] gi|254668532|emb|CBA05943.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|304338419|gb|EFM04540.1| DNA-binding protein [Neisseria meningitidis ATCC 13091] gi|308389307|gb|ADO31627.1| putative transcriptional regulator [Neisseria meningitidis alpha710] gi|313005773|emb|CBN87227.1| putative transcriptional regulator [Neisseria lactamica 020-06] gi|319410463|emb|CBY90823.1| putative HTH-type transcriptional regulator [Neisseria meningitidis WUE 2594] gi|325132224|gb|EGC54918.1| DNA-binding protein [Neisseria meningitidis M6190] gi|325198344|gb|ADY93800.1| DNA-binding protein [Neisseria meningitidis G2136] Length = 106 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLLP 83 >gi|325138207|gb|EGC60777.1| DNA-binding protein [Neisseria meningitidis ES14902] gi|325140561|gb|EGC63082.1| DNA-binding protein [Neisseria meningitidis CU385] gi|325142395|gb|EGC64802.1| DNA-binding protein [Neisseria meningitidis 961-5945] gi|325204197|gb|ADY99650.1| DNA-binding protein [Neisseria meningitidis M01-240355] Length = 105 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77 Query: 79 KLLKP 83 +LL P Sbjct: 78 QLLLP 82 >gi|86359863|ref|YP_471754.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283965|gb|ABC93027.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 73 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F N + R L+Q+E+ R +++IS LE +ID + LA L+ Sbjct: 4 REVFARNLKAARLAKGLSQEELAFRADIDRTYISSLERSVYNASIDVVDRLAAILEMEAS 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus thermophilus CNRZ1066] gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative [Streptococcus thermophilus CNRZ1066] Length = 75 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ L+Q++ + G +++ + +E+GK +++ N+ +A D + +L Sbjct: 6 FGKRIKELRKQTGLSQEKFALKIGMDRTYYASIESGKRNVSLKNIEKIASGFDISISQLF 65 >gi|315648369|ref|ZP_07901468.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453] gi|329923099|ref|ZP_08278615.1| restriction-modification system control element Bcll [Paenibacillus sp. HGF5] gi|315276063|gb|EFU39409.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453] gi|328941872|gb|EGG38157.1| restriction-modification system control element Bcll [Paenibacillus sp. HGF5] Length = 78 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF +NIRKE K++Q+E+ R+ +++IS LE G +++++ +A LD +L Sbjct: 6 IFGQVLKNIRKEQKVSQEELAFRSNLDRTYISMLERGIHQPTLNSLLAIAAALDMKAAEL 65 Query: 81 L 81 + Sbjct: 66 V 66 >gi|268596876|ref|ZP_06131043.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268550664|gb|EEZ45683.1| transcriptional regulator [Neisseria gonorrhoeae FA19] Length = 106 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLPP 83 >gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4] gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4] Length = 82 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 I I R R +A L Q+++ G +++S++E G IN+ N++ A L Sbjct: 5 PISAAARIIGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERGLRNINLHNLLKFADGL 64 Query: 74 DTPLWKLL 81 KL+ Sbjct: 65 GVNPAKLV 72 >gi|240139351|ref|YP_002963826.1| hypothetical protein MexAM1_META1p2796 [Methylobacterium extorquens AM1] gi|240009323|gb|ACS40549.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R I N R +R L+Q+ + G ++++ +E G + I + +A L P+ Sbjct: 3 ARTIIGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPV 62 Query: 78 WKLL 81 LL Sbjct: 63 AHLL 66 >gi|240080756|ref|ZP_04725299.1| putative transcriptional regulator [Neisseria gonorrhoeae FA19] Length = 105 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77 Query: 79 KLLKP 83 +LL P Sbjct: 78 QLLPP 82 >gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 179 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK L+ ++I RTG +Q ++S++E K++ +I + +A+ L+ PL LL Sbjct: 4 GCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFLL 62 >gi|296125780|ref|YP_003633032.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017596|gb|ADG70833.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 139 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 4 RKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + D+ + I E +I N R IRK T EI +G + ++ +E GK I Sbjct: 19 KTEDDKNNERPIEDEELISSVGKNIRAIRKSQMKTISEIAEVSGISSKYLQSVEVGKRNI 78 Query: 62 NIDNMIILAHTLDTPLWKLL 81 +I N+ +A TL+ P+ L Sbjct: 79 SITNLNKIAKTLNVPIAVLF 98 >gi|144897919|emb|CAM74783.1| Helix-turn-helix motif [Magnetospirillum gryphiswaldense MSR-1] Length = 85 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F R IR E +TQ+E+ ++ G + ++S++E G+S ++ + LA L + Sbjct: 4 RQKFGLLLRKIRIEKAMTQEELAHQAGMSVPYLSDIERGRSAPSLVVLADLATALGITMA 63 Query: 79 KLLK 82 + + Sbjct: 64 DMFR 67 >gi|300704586|ref|YP_003746189.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072250|emb|CBJ43582.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R P I + R A +Q+ + +++IS +E G + + Sbjct: 8 KRPDPSPSRPAPISVA---LGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPS 64 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 ++ + + H L L +L P Sbjct: 65 VETLANICHCLGVTLSELFAP 85 >gi|316985058|gb|EFV64011.1| helix-turn-helix family protein [Neisseria meningitidis H44/76] Length = 106 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLLP 83 >gi|300702647|ref|YP_003744247.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070308|emb|CBJ41600.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R IL + R A +Q+ + +++IS +E G + + Sbjct: 8 KRPDPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 64 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 I+ + L + L+ L +L P Sbjct: 65 IETLANLCYALNVTLAELFGP 85 >gi|225076577|ref|ZP_03719776.1| hypothetical protein NEIFLAOT_01625 [Neisseria flavescens NRL30031/H210] gi|319639292|ref|ZP_07994043.1| transcriptional regulator [Neisseria mucosa C102] gi|224952077|gb|EEG33286.1| hypothetical protein NEIFLAOT_01625 [Neisseria flavescens NRL30031/H210] gi|317399476|gb|EFV80146.1| transcriptional regulator [Neisseria mucosa C102] Length = 98 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L D R + N R R +Q+E+ + G ++++S +E + I + N+ Sbjct: 9 PSLPDP-QDLRAVIAYNMRLYRVNHGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEK 67 Query: 69 LAHTLDTPLWKLLKP 83 +A L +KLL P Sbjct: 68 IASALKIAPYKLLLP 82 >gi|325136301|gb|EGC58909.1| DNA-binding protein [Neisseria meningitidis M0579] gi|325202093|gb|ADY97547.1| DNA-binding protein [Neisseria meningitidis M01-240149] Length = 106 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 Query: 79 KLLKP 83 +LL P Sbjct: 79 QLLLP 83 >gi|325564096|gb|ADZ31417.1| C.SfoIP [Serratia fonticola] Length = 77 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F ++R E KL+Q+++ R ++++S +E G+ +++ N+ LA L+ Sbjct: 8 KAFGKKMYSLRIELKLSQEQVAERAQLDRTYVSSVERGQRNVSLLNICKLAAALEVTPES 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|325200161|gb|ADY95616.1| DNA-binding protein [Neisseria meningitidis H44/76] Length = 105 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77 Query: 79 KLLKP 83 +LL P Sbjct: 78 QLLLP 82 >gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 179 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK L+ ++I RTG +Q ++S++E K++ +I + +A+ L PL LL Sbjct: 4 GCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFLL 62 >gi|91790905|ref|YP_551856.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700785|gb|ABE46958.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 78 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E+ ++Q R GF Q+++S LE G++ ++ + ++A + +++ Sbjct: 9 VGMTVRKLRVESGMSQVVFGERCGFYQTYLSRLERGQANPTLNALEVIAGAFNLSIFEFF 68 Query: 82 K 82 + Sbjct: 69 E 69 >gi|325206015|gb|ADZ01468.1| DNA-binding protein [Neisseria meningitidis M04-240196] gi|325208153|gb|ADZ03605.1| DNA-binding protein [Neisseria meningitidis NZ-05/33] Length = 105 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77 Query: 79 KLLKP 83 +LL P Sbjct: 78 QLLLP 82 >gi|325479315|gb|EGC82411.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 177 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RKE TQK++ + G + ++IS++E G S + +N+ +A L + +L Sbjct: 1 MLNENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISKPSDENLKKIADVLGVTVNEL 60 >gi|299530876|ref|ZP_07044290.1| hypothetical protein CTS44_08827 [Comamonas testosteroni S44] gi|298721097|gb|EFI62040.1| hypothetical protein CTS44_08827 [Comamonas testosteroni S44] Length = 126 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + + + N +R+E +L+Q+E+ +R G ++ I +E K + ++ + L Sbjct: 51 QKKKTAVSAKELLAKNVLRLREERELSQEELCHRAGVHRAIIGHIERQKRNVTLETLEAL 110 Query: 70 AHTLDTPLWKLLK 82 A LD + +L Sbjct: 111 AVGLDVGISELFT 123 >gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 129 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RK+ L+ +E+ + +IS +E K +++++I +++ L+ + +L Sbjct: 7 LIGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDEL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|94313037|ref|YP_586246.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356889|gb|ABF10977.1| transcriptional regulator, Xre/Cro/CI family [Cupriavidus metallidurans CH34] Length = 212 Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M ++++ EP ++ + ER +RK LT +E+ R +S++S+LE G S+ Sbjct: 15 MSKKQKVEPVAAEPSIAER------LAELRKLNGLTLEELAQRASLTKSYLSKLERGLSS 68 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 I ++ LA L + +L+ Sbjct: 69 PTIGTVLKLADALGVTVDQLIT 90 >gi|326315473|ref|YP_004233145.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372309|gb|ADX44578.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 189 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R EA L+Q + G ++ IS LE G + I++ ++ LA L L+ Sbjct: 18 VSENLRRLRAEAGLSQLALAEAAGLSRRMISSLEAGDTNISLASLDRLAAALGVGFVALV 77 >gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] Length = 180 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R + LTQ+E+ RT + +IS+LE S+ +++ + L + + Sbjct: 4 GEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 63 >gi|75675038|ref|YP_317459.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419908|gb|ABA04107.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 71 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R + KLTQ+E+ R+G + ++ +E G + ++ + +A LD Sbjct: 4 KEVMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSVLGKVAVALDVDPC 63 Query: 79 KLLKP 83 L++P Sbjct: 64 DLIRP 68 >gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 94 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ +LL Sbjct: 8 FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|291521949|emb|CBK80242.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 80 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 38/73 (52%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 L I R + N + RK ++++Q+ + + G +++IS+LE K + M++L Sbjct: 7 ELEGEIERMKQRLSYNIKRYRKLSRVSQQALADMCGLHRTYISDLENAKCNPTLSVMMVL 66 Query: 70 AHTLDTPLWKLLK 82 A L+ L LLK Sbjct: 67 ADCLNVQLEDLLK 79 >gi|240136847|ref|YP_002961314.1| Transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240006811|gb|ACS38037.1| Transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 97 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R +R L+Q+ + G A ++S +E G +D + LA L + Sbjct: 4 RGRLAWNLRLLRGARGLSQETLAVDAGVAAPYLSGIERGVRNPTVDVLDRLAGALGVEID 63 Query: 79 KLLK 82 LL+ Sbjct: 64 ALLR 67 >gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 180 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + + +R + LTQ+E+ RT ++ +IS+LE ++ +I+ + L L Sbjct: 1 MQIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFNLLEVLGCTPRD 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] Length = 185 Score = 62.7 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK+ L+Q+E+ R G S IS +E GK + ++ ++ + + L + Sbjct: 7 GKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFFT 66 >gi|242278893|ref|YP_002991022.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121787|gb|ACS79483.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 107 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R+IRK+ LTQ ++ N + +ISE+E G S + +D + +A+ L P+ Sbjct: 6 KLVGNKIRSIRKKRGLTQAQLGNESDLNDKYISEIERGSSKLTVDALNKIANGLKVPVKD 65 Query: 80 LL 81 +L Sbjct: 66 IL 67 >gi|253574698|ref|ZP_04852038.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845744|gb|EES73752.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 129 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R RK LTQ+++ T S+I LE G+ + ++ + +A L ++ Sbjct: 25 KQVGKNVRYYRKLKGLTQEQLAESTETYGSYIGRLERGEQNVQLETLHKIADALQISVYA 84 Query: 80 LLK 82 L + Sbjct: 85 LFR 87 >gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 179 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R+ LTQ+E+ RT ++ +IS++E+ K++ N++ + + L T Sbjct: 4 GQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRDFF 62 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R LTQ+++ TG S+I ++E G+ + +++ +I ++ +LDT + + Sbjct: 12 LLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISYI 71 Query: 81 L 81 L Sbjct: 72 L 72 >gi|78186565|ref|YP_374608.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166467|gb|ABB23565.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 105 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R +A +++++ +G + ++I +E G I I N LA L T + KLL Sbjct: 13 LGRNIRAARVKAGYSREKLSELSGLSTNYIGIIERGMKNITIINCQRLACALSTSIDKLL 72 Query: 82 K 82 + Sbjct: 73 E 73 >gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] Length = 179 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T L Sbjct: 1 MQIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLTSPSISTLVDILQCLGTSLKD 60 Query: 80 LLK 82 + Sbjct: 61 FFQ 63 >gi|296446597|ref|ZP_06888539.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296255951|gb|EFH03036.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 118 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R+ +L+Q+E+ +R +++IS +E + +D + LA L P Sbjct: 4 RETLARNLRKYRRAQRLSQEELGHRAELDRTYISSIERCVYSATVDVVGRLADALGIPAL 63 Query: 79 KLLKP 83 +LL+P Sbjct: 64 ELLRP 68 >gi|240140512|ref|YP_002964992.1| hypothetical protein MexAM1_META1p4053 [Methylobacterium extorquens AM1] gi|240010489|gb|ACS41715.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + I N R +R L+Q+ + G ++++ +E G + I + +A L P+ Sbjct: 3 AQTIIGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPV 62 Query: 78 WKLL 81 LL Sbjct: 63 AHLL 66 >gi|169825863|ref|YP_001696021.1| MerR family transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168990351|gb|ACA37891.1| transcriptional regulator, MerR family [Lysinibacillus sphaericus C3-41] Length = 132 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R IR L+Q+E+ RTG F++ +S +E G+S I + + L LD P Sbjct: 9 KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETLMKALDIP 68 Query: 77 LWKLL 81 +L Sbjct: 69 PEELF 73 >gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104] Length = 197 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R R+E L+ E+ R+G ++ +S++E G ++ + +L LD P + Sbjct: 10 QLVARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGNPTVETLALLGAALDMPARR 69 Query: 80 LLK 82 LL Sbjct: 70 LLT 72 >gi|167571316|ref|ZP_02364190.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 100 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 40/73 (54%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + R N R+ R++ L+Q+++ + G ++++S++E I++DN+ LA Sbjct: 4 SPNTAAAVRARLAANLRDQRQQRGLSQEKLADEAGLHRTYVSQVERTIVNISLDNLTKLA 63 Query: 71 HTLDTPLWKLLKP 83 L+T + LLKP Sbjct: 64 DALETDVHLLLKP 76 >gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] Length = 184 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RKE KLT K+I TG + +IS+LE G ++ ++ ++ L + L Sbjct: 1 MVGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVEPSLSSLRKVSEFLGVSPYLL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 185 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK+ L+Q+E+ R G S IS +E GK + ++ ++ + + L + Sbjct: 7 GKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFFT 66 >gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 179 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + L L T K Sbjct: 4 GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63 >gi|126649566|ref|ZP_01721807.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] gi|126593891|gb|EAZ87814.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] Length = 129 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R IR L+Q+E+ RTG F++ +S +E G+S I + + IL LD P Sbjct: 6 KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLEILMKALDIP 65 Query: 77 LWKLL 81 +L Sbjct: 66 PEELF 70 >gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228] gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 179 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + L L T K Sbjct: 4 GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63 >gi|294617990|ref|ZP_06697595.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|291595799|gb|EFF27087.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 190 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ K+TQ ++ + ++S+++++E + +I+ + +A LD + LL Sbjct: 4 GRNIKIARKQKKMTQNDLAIKASISRSYLADVEGNRYNPSIETLDSIARALDVQIGTLL 62 >gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus RIMD 2210633] gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus 10329] Length = 185 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK+ L+Q+E+ R G S IS +E GK + ++ ++ + + L + Sbjct: 7 GKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFF 65 >gi|94309910|ref|YP_583120.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353762|gb|ABF07851.1| conserved hypothetical protein with lambda repressor-like DNA-binding domains [Cupriavidus metallidurans CH34] Length = 131 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +RK+ +Q+ + +G A+S++S +E G + + N+ LA TL Sbjct: 10 KLFGRHLTWLRKQRGWSQEALSLESGLARSYLSGIERGTRNVALYNICTLADTLGVAPSV 69 Query: 80 LL 81 +L Sbjct: 70 ML 71 >gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7] gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7] Length = 287 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RKE L+Q+ + N G ++ +S+ E +++ + DN+I+LA L LLK Sbjct: 18 ANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSLDDLLK 77 >gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 182 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R + LTQ+E+ RT + +IS+LE S+ +++ + L + + Sbjct: 6 GEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 65 >gi|92118034|ref|YP_577763.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91800928|gb|ABE63303.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 86 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N + RK L+Q+ + +++IS +E G ++D ++ LA L T Sbjct: 17 RRVLAQNVKAARKTLDLSQEALALEAEIDRTYISGVERGLRNPSLDLIVKLALNLKTTPA 76 Query: 79 KLLKP 83 LL P Sbjct: 77 ALLTP 81 >gi|153008007|ref|YP_001369222.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559895|gb|ABS13393.1| putative transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 87 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N + IR+E +L+Q+E+ R +++IS LE GK I + +LA L Sbjct: 17 RSVVGLNVQRIRRERRLSQEELSFRAAKTRAYISGLEAGKRNPTILTLAMLADALAVEPN 76 Query: 79 KLLK 82 LL+ Sbjct: 77 DLLR 80 >gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] Length = 179 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+E+ +R+ ++ +IS+LE ++ +I ++ + L T L + Sbjct: 4 GQKVRELRIAKNLTQEELADRSELSKGFISQLERDLTSPSIATLVDILQCLGTNLNEFF 62 >gi|207721971|ref|YP_002252409.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|207744683|ref|YP_002261075.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] gi|206587144|emb|CAQ17728.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|206596090|emb|CAQ63017.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] Length = 113 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R IL + R A +Q+ + +++IS +E G + + Sbjct: 8 KRPDPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 64 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 ++ + L + L+ L +L P Sbjct: 65 VETLANLCYALNVTLAELFGP 85 >gi|11138961|gb|AAG31560.1| SgraIC control protein [Streptomyces griseus] Length = 79 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R +Q+ + ++G ++++S LE G+ + + LA L+ PL +L++ Sbjct: 12 VRAVRLRRGWSQELLSEKSGLDRTYVSGLERGRRNPALLTLARLADALEVPLSELIR 68 >gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ G S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ G S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|221235725|ref|YP_002518162.1| Xre family transcriptional regulator [Caulobacter crescentus NA1000] gi|220964898|gb|ACL96254.1| transcriptional regulator, Xre family [Caulobacter crescentus NA1000] Length = 69 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ L Q E+ + G +++S +ETGK + + + LA L P L Sbjct: 6 VVGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLASALRVPETDL 65 Query: 81 L 81 + Sbjct: 66 V 66 >gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 129 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RK+ L+ +E+ + +IS +E K +++++I +++ L+ + +L Sbjct: 7 LIGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDEL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|330825626|ref|YP_004388929.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329310998|gb|AEB85413.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 87 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M + + L D R + R R E +Q+ + ++++S +E + Sbjct: 1 MSAKPQAPTSLPDPNNL-RDVLAYWMRLKRVEKGWSQERLAMECELDRTYVSAVERSRWN 59 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 +++ N+ A LD W LL+P Sbjct: 60 VSLSNIERFAQALDVEPWMLLRP 82 >gi|325130250|gb|EGC53019.1| PvuIIC [Neisseria meningitidis OX99.30304] Length = 98 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 11 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 70 Query: 79 KLLKP 83 +LL P Sbjct: 71 QLLLP 75 >gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 179 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R E +LTQ+E+ NR ++ +IS++E ++ +I + + L T L K Sbjct: 4 GEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPDFFK 63 >gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio nitroreducens DSM 19672] gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 38/61 (62%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+IRK +T +++ +TGF +S+IS++E GK++ +I ++ + + + + +L Sbjct: 3 YGEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISELF 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|209694526|ref|YP_002262454.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008477|emb|CAQ78645.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 70 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R IRK ++Q ++ +S++ +E G+ I ++ + LA L+ + +LL Sbjct: 8 FGKKLREIRKVKGVSQDKLALIADIDRSYVGRIERGEVNITLEKVYKLADALECDVTELL 67 >gi|159026724|emb|CAO89038.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 75 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 L + F R R+E L+Q+ + + +++IS ++ GK ++++N+ LA Sbjct: 4 KESLDIKHRFGKAIRRRRRELDLSQEILAEKAELHRTYISSIQLGKCNVSLENIEKLAKA 63 Query: 73 LDTPLWKLL 81 LD + L Sbjct: 64 LDISIADLF 72 >gi|302385593|ref|YP_003821415.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196221|gb|ADL03792.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 68 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R ++Q++ +++ + +E+GK I+I N+ +A+ L L +L Sbjct: 6 FGQRIKILRNGLGISQEKFALSIDMDRTYYASVESGKRNISIKNIEKIANGLGITLEELF 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus] Length = 185 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R EA L+ E+ R+G + ISELE G+ T +D + L L PL Sbjct: 11 VGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPL 66 >gi|325564166|gb|ADZ31423.1| C.PsuNIP [Pseudomonas stutzeri] Length = 78 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+ +L+Q+E+ +R G +++IS +E G ++ M +A L + L L Sbjct: 7 FGQAVRRHRELLRLSQEELADRAGIDRTYISGVERGVRNPSLLVMQRIATALGSDLDVLF 66 >gi|251800040|ref|YP_003014771.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547666|gb|ACT04685.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 182 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IRK +T +I TG +Q ++S++ET K++ +I + +A+ L PL LL Sbjct: 4 GSAIRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAYLL 62 >gi|152982646|ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille] gi|151282723|gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 109 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +Q+ + + +S++ E+E GK+ ++ + LA L + LL Sbjct: 32 VRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTIPSLITLDKLASALGLKVSDLL 87 >gi|160916243|ref|ZP_02078450.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991] gi|158431967|gb|EDP10256.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991] Length = 94 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + RK+ TQ ++ G Q++ISE+E GK + + + LA L + +L+ Sbjct: 34 FGRNVQMYRKQRHYTQFQLAELCGLNQNYISEIENGKRNVTLRVLNDLAEALGVEVKELV 93 >gi|153004310|ref|YP_001378635.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027883|gb|ABS25651.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5] Length = 68 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N ++ R KL+Q+ + + G + S+IS LE G+ T +D + LA L LL Sbjct: 8 FAVNLKSERLRRKLSQEALAAKAGLSVSYISMLERGQRTPPLDTLESLAKALAVSPTSLL 67 >gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 256 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E ++ ++ + + S++SE+E G ++ + LA L+ +L++ Sbjct: 5 GERIRALREEKGMSLHDLARKAQISLSYLSEIERGTKRPSLRTIEKLAQALNVSKARLVE 64 Query: 83 P 83 P Sbjct: 65 P 65 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 + R + L ++ R +R+E LTQ ++ G I ++E GK Sbjct: 118 LKRLAEELGVAPVTFLGQQGTLGARLRALREEYGLTQAQLAAMAGVTAGLIGQIEQGKVQ 177 Query: 61 INIDNMIILAHTLDT-PLWKLLKP 83 ++ + +A + P + L++P Sbjct: 178 PSLKTLEKIAQAMGVSPCYFLIEP 201 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E + +E+ R G + S++SE+E G ++ + LA L L Sbjct: 74 VGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVYPSLSTLKRLAEELGVAPVTFL 133 >gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 189 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK A L+Q + +G ++ I+ LE G S I++ ++ LA L+ L+ Sbjct: 18 VGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEVGFVDLV 77 >gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] Length = 119 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +R++ ++Q+E+ + + + + ++E +D + +A L + +L Sbjct: 13 VLGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERALKNPTVDTVSHIADALGITVDQL 72 Query: 81 LK 82 + Sbjct: 73 FQ 74 >gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 178 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 40/63 (63%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R IRK+ +T ++I +TGF +S+IS++E GK++ +I ++ + + L T + + Sbjct: 1 MSYGIKLREIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISE 60 Query: 80 LLK 82 L + Sbjct: 61 LFE 63 >gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 186 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R L+ E+ R ++ +SE+E+G+ NI+ + L LD PL +L Sbjct: 7 GDRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPLTGML 65 >gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] Length = 179 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R+ LTQ+E+ RT ++ +IS++E+ K++ N++ + + L T Sbjct: 4 GQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRDFF 62 >gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 181 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+ E+ R+G + +SELE+G +D + L L+ PL +L Sbjct: 7 VGRRLRELRTARGLSLSELARRSGVGKGTLSELESGTRNPTLDTLYALTTALNRPLSAVL 66 >gi|225022262|ref|ZP_03711454.1| hypothetical protein CORMATOL_02297 [Corynebacterium matruchotii ATCC 33806] gi|224944985|gb|EEG26194.1| hypothetical protein CORMATOL_02297 [Corynebacterium matruchotii ATCC 33806] Length = 70 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R+ RKE L+Q+ + G ++++ +E G+ + + + LA + + Sbjct: 7 QKVVGAYLRSYRKERGLSQERFADVLGVHRTYMGSVERGERNLTLQTVEHLAEQIGVEVR 66 Query: 79 KLL 81 ++L Sbjct: 67 EML 69 >gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 456 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 2 PRRK--RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 P R+ P R + R R+ L+Q+E+ R G ++ I +E G+ Sbjct: 33 PGRRDGEAGPEARGRARPGREGVASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRM 92 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 T ++ + LA L + L + Sbjct: 93 TPSLAVAMRLARALGCRVEDLFR 115 >gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 73 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A + R + R RKEA +Q+++ + + ++S +E GK + +DN++ +A L Sbjct: 3 ANQKHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLVKIAKAL 62 Query: 74 DTPLWKLL 81 T + L+ Sbjct: 63 GTHVRDLV 70 >gi|241518608|ref|YP_002979236.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863021|gb|ACS60685.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 72 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R +R+ KL+Q+E+ +R +++IS LE + +I+ + LA L Sbjct: 4 RETFARNLRTLRQARKLSQEELAHRASVDRTYISSLERCVYSPSIEVLDRLAAVLGVEPA 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + + +RK K+TQ+++ + G ++S +E G+S+ +++ M +A LD + Sbjct: 5 KELLGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALDVEMK 64 Query: 79 KLL 81 + Sbjct: 65 DMF 67 >gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1] gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1] Length = 180 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI R +R E +LTQ+E+ +RT + +IS++E ++ +I ++ + L T L + Sbjct: 1 MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|148554493|ref|YP_001262075.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499683|gb|ABQ67937.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 57 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E +Q+ + G +++IS++E G + + LA P +L+ Sbjct: 1 MRRLREEKGWSQEAYADEAGIHRTYISDIERGARNPTVKVVEKLAAPFGVPAGQLI 56 >gi|86158858|ref|YP_465643.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197121836|ref|YP_002133787.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220916628|ref|YP_002491932.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|85775369|gb|ABC82206.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171685|gb|ACG72658.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219954482|gb|ACL64866.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 68 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N ++ R KL+Q+ + + G + S+IS LE G+ T +D + LA L LL Sbjct: 8 FAVNLKSERLRRKLSQEALAAKAGLSVSYISMLERGQRTPPLDTLESLAKALSVSPTSLL 67 >gi|328882934|emb|CCA56173.1| hypothetical protein SVEN_2887 [Streptomyces venezuelae ATCC 10712] Length = 62 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 35/62 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R+ R A LTQ+ + +G A++ I E+E+G++ +D +++LA + P L Sbjct: 1 MFGARVRDARMYANLTQQRVGELSGLARATIQEIESGRAAPTVDTVLLLADAIGVPPGVL 60 Query: 81 LK 82 + Sbjct: 61 FE 62 >gi|294790649|ref|ZP_06755807.1| BamHI control element [Scardovia inopinata F0304] gi|294458546|gb|EFG26899.1| BamHI control element [Scardovia inopinata F0304] Length = 83 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 36/72 (50%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +++ I +R+ R R+E KL+Q+++ +S++ +E G+ ++++D + L Sbjct: 1 MTNDIRSKRLALGQAIRYYREEKKLSQEDLALAADMDRSYVGRVERGEKSVSLDKIWQLC 60 Query: 71 HTLDTPLWKLLK 82 L +L Sbjct: 61 IALGITPVELFT 72 >gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] Length = 179 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + K Sbjct: 4 GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63 >gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 61.9 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R LTQ+ + ++ G +S +ETG S++++ ++ +A+ L+ + + Sbjct: 6 KAIGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLNVSVDE 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|78063471|ref|YP_373379.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971356|gb|ABB12735.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 73 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R+ +Q+++ G +S++ E+E G++ +I +A D + LL Sbjct: 8 FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67 >gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ L+Q ++ G ++ IS+ E G + ++D + L L L Sbjct: 1 MFGERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAEPDLDKIAKLRDILGVSYADL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] Length = 134 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + AI+ E++ F + R A LTQ+E+ + + S+IS LE GK +I +++ Sbjct: 17 PKVKGAIMEEKIGF--RVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLM 74 Query: 69 LAHTLDTPLWKLLK 82 LA ++ L LL+ Sbjct: 75 LADIMNVGLEDLLR 88 >gi|168204997|ref|ZP_02631002.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170663385|gb|EDT16068.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 180 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M + +RK+ KLTQK + TG ++S++S++E + + D + LA L L Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDL 58 >gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 179 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T K Sbjct: 4 GSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLSILEVLGTSASDFFK 63 >gi|147677133|ref|YP_001211348.1| hypothetical protein PTH_0798 [Pelotomaculum thermopropionicum SI] gi|146273230|dbj|BAF58979.1| Uncharacterized protein conserved in bacteria [Pelotomaculum thermopropionicum SI] Length = 114 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N R RK LT K++ +++ LE G+ ++ + +A TL+ + Sbjct: 9 KVFGKNVRQYRKMKGLTLKQMSRGLNITGAYLGYLERGQRNPSLLALAEIAKTLEVQPYL 68 Query: 80 LLKP 83 LL P Sbjct: 69 LLIP 72 >gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] Length = 180 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + + Sbjct: 4 GEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 63 >gi|241554336|ref|YP_002979549.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863642|gb|ACS61304.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 72 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R +R+ K++Q+E+ +R+ +++IS LE + +I+ + LA L Sbjct: 4 RETFARNLRTLRQARKMSQEELAHRSSVDRTYISSLERCVYSPSIEVLDRLAAVLGVEPA 63 Query: 79 KLLK 82 LL+ Sbjct: 64 DLLR 67 >gi|299133247|ref|ZP_07026442.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593384|gb|EFI53584.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 76 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N +R E ++Q+E+ + +S++S+LETGK+ + ++ M +A L Sbjct: 4 RRTFAANVVKLRAERGISQEELAHLAEINRSYLSDLETGKTYVGLEIMGKIADVLGVEGA 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|251779168|ref|ZP_04822088.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083483|gb|EES49373.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 80 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIR+ ++Q+++ + +Q +IS +E GK + I + +A+ L+ LL Sbjct: 8 LKNIRENKGISQRQLAKKLNISQGYISSIENGKKSPTIRMLYRIANALEICPHYLL 63 >gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea] gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain [Saccharopolyspora erythraea NRRL 2338] Length = 196 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R L+ E+ R + +SELE G+ ++ + LA L+ PL + Sbjct: 5 KVVGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGE 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|17545816|ref|NP_519218.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428110|emb|CAD14799.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A +Q+ + +++IS +E G + +++ + + H L L +L Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Query: 82 KP 83 P Sbjct: 84 AP 85 >gi|323526312|ref|YP_004228465.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323383314|gb|ADX55405.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 74 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK +Q+ + +G A+S+I +E G+ I + N+ +LA TL + Sbjct: 8 LFGKRLIALRKARGWSQERLALESGLARSYIGGIERGQRNIALYNICVLAATLGISPASM 67 Query: 81 LK 82 L+ Sbjct: 68 LE 69 >gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] Length = 185 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N +RKE L+Q+E+ + G S IS +E K + ++ ++ + + L Sbjct: 2 DNHQIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKVSPSVSSLQKIVNVFSLSL 61 Query: 78 WKLLK 82 + Sbjct: 62 SEFFT 66 >gi|186475021|ref|YP_001856491.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191480|gb|ACC69445.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 90 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R ++ R +R E +Q+E+ R +S+++ +E G I++DN+ LA+ Sbjct: 10 STPARQQLADSLRRLRAERNWSQEELAARCELDRSFVAHVERGARNISLDNVEKLANAFG 69 Query: 75 TPLWKLL 81 + L Sbjct: 70 VGIADLF 76 >gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] Length = 179 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R E LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L + Sbjct: 4 GNKIKELRIEKNLTQEELANRAELSKGFISQLERNLTSPSIATLIDILQCLGTNLTEFF 62 >gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15] gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15] Length = 142 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + RKE K+TQK + + ++S++ +LE+G+ ++D + +A LD + LL Sbjct: 6 NIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINLLLT 63 >gi|169346977|ref|ZP_02865925.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297036|gb|EDS79160.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 180 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M + +RK+ KLTQK + TG ++S++S++E + + D + LA L L Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDL 58 >gi|114800368|ref|YP_759512.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740542|gb|ABI78667.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 72 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF N R +R++ ++Q+E+ + ++++S LE + ++D + +A LD Sbjct: 4 RDIFAQNIRRVRRQRGVSQEELASLANIDRTYVSALERSVYSASLDVVASIAKALDVEPH 63 Query: 79 KLL 81 +LL Sbjct: 64 ELL 66 >gi|45368590|ref|NP_990918.1| hypothetical protein pEST4011_44 [Achromobacter denitrificans] gi|44937759|gb|AAS49459.1| TrbA [Achromobacter denitrificans] Length = 125 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF N + +E +T+ ++ + G + S++S+L GK+ ++ M +A L PL Sbjct: 4 QIFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPT 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLE 66 >gi|297660613|ref|YP_003710324.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297377489|gb|ADI39318.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 78 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R F R R E +TQ+E+ + +++ +E G+ I ++N++ +A L Sbjct: 12 PIRKAFGLKVRMRRFEIGITQEELAEKADLHPTYVGSVERGERNIALENIVAIAKGLGCS 71 Query: 77 LWKLL 81 L+ Sbjct: 72 PKDLM 76 >gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] Length = 261 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 36/59 (61%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RKEA L+Q+ + + G ++ +S+ E+G+ST +I+N+ L+ L +L+K Sbjct: 5 EKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDELIK 63 >gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 81 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Query: 17 RERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ I + R RK+AKL+Q+E+ + +G +++IS +E G I++ N++ + L Sbjct: 3 PDKKILIQLGDRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSITGVL 62 Query: 74 DTPLWKLL 81 + ++ Sbjct: 63 GVDVGDIV 70 >gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 262 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+A L+Q+++ G ++ +S+ E G+S ++D +++L+ L +L+ Sbjct: 3 FSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDELV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|317508465|ref|ZP_07966134.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] gi|316253243|gb|EFV12644.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] Length = 177 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R + ++T +E+ RTG +S++S++E G ST +I + +A L + +L P Sbjct: 5 LRAARHQQRMTLEELAERTGLTKSYLSKVERGLSTPSIAVALKIAGALGVDVARLFDP 62 >gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 219 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 9 PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 PH++ A RE+++ R+ RK+ ++T E+ + TG + +S++E G ++ ++ Sbjct: 18 PHVTSAGEREKVLEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIENGNTSPSLST 77 Query: 66 MIILAHTLDTPLWKLLK 82 + LA+ L PL + Sbjct: 78 LQTLANALSVPLTSFFR 94 >gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 180 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M + +RK+ KLTQK + TG ++S++S++E + + D + LA++L L Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALANSLKLDL 58 >gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] Length = 259 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +R+E ++Q+E+ N G ++ + + E+G S NIDN++ ++ L L Sbjct: 1 MFEERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYL 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305] gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces brasiliensis DSM 5305] Length = 189 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+E LT +E+ +++G +SW+S++E + T ++ + +A L P+ +L+ Sbjct: 6 LAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVAELV 65 Query: 82 K 82 + Sbjct: 66 R 66 >gi|300691939|ref|YP_003752934.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299078999|emb|CBJ51660.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A +Q+ + +++IS +E G + +++ + + H L L +L Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Query: 82 KP 83 P Sbjct: 84 AP 85 >gi|294013139|ref|YP_003546599.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676469|dbj|BAI97987.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 80 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + + + R +RK LTQ+++ T ++ I +E G+ I I M+ LA LD Sbjct: 3 VDPDLVPLGDAVRQLRKVRGLTQEDLSGLTELHRNHIGGIERGERNITIKTMLALARALD 62 Query: 75 TPLWKLL 81 +L Sbjct: 63 VQPAELF 69 >gi|291286694|ref|YP_003503510.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883854|gb|ADD67554.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 105 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +Q+ + + + ++ E+E G+S ++ + +A L+ P+ +L+ Sbjct: 8 LGRRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALNIPIAELM 67 >gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 180 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + + Sbjct: 4 GKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKEFFE 63 >gi|290791048|gb|ADD63273.1| TrbA mating pair formation protein, transcription regulator [uncultured bacterium pAKD4] Length = 125 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF N + +E +T+ ++ + G + S++S+L GK+ ++ M +A L PL Sbjct: 4 QIFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPT 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLE 66 >gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 259 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N IRKE ++Q+E+ ++ IS+ E G + +++N+ L+ +L + +LL Sbjct: 3 FKDNLYRIRKEKGMSQEELAALCDVSRQAISKWENGTANPDMENLKTLSRSLRVSIDELL 62 >gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 181 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LTQ+E+ RT ++ +IS++E ++ +++ + L Sbjct: 5 GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 >gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] Length = 268 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +RK+ +Q+ + R G ++ +S+ E+G S +I+N++ L+ + L + Sbjct: 1 MTFQERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 180 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + +LTQ+E+ RT ++ +IS+LE +S+ +++ + L Sbjct: 4 GQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADFF 62 >gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 180 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + +LTQ+E+ RT ++ +IS+LE +S+ +++ + L Sbjct: 4 GQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADFF 62 >gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 180 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R + +LTQ+E+ RT ++ +IS+LE +S+ +++ + L Sbjct: 4 GQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADFF 62 >gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 180 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+R + LTQ+E+ RT ++ +IS+LE S+ +++ + L + + Sbjct: 4 GKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKEFFE 63 >gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 179 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + K Sbjct: 4 GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63 >gi|299067065|emb|CBJ38261.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 113 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A +Q+ + +++IS +E G + +++ + + H L L +L Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 Query: 82 KP 83 P Sbjct: 84 AP 85 >gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ED133] Length = 179 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + K Sbjct: 4 GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63 >gi|254497228|ref|ZP_05110037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353552|gb|EET12278.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 84 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +Q+EI + +G ++++ +E G+ I+I N+I +A L+ + L+ Sbjct: 12 GEKIRTLRTSEGYSQEEIADASGMGRTYMGRVERGEQNISIQNLIQIAFALNVEVGVLV 70 >gi|170697248|ref|ZP_02888342.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137868|gb|EDT06102.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 73 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R+ +Q+++ G +S++ E+E G++ +I +A D + LL Sbjct: 8 FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A LT KE+ +TG + S+IS++E G S+ I ++ +A L+ P+ Sbjct: 6 LARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSFF 65 Query: 82 KP 83 P Sbjct: 66 TP 67 >gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 280 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RK+ L+Q+E+ + G ++ +S+ E +++ + DN+I+LA L +LLK Sbjct: 6 ANRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLDELLK 65 >gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 321 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L E IF + +R+EA LTQ E+ + G ++ +S E G +ID + +A+ + Sbjct: 42 LIEENIFAMRLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIANYFNV 101 Query: 76 PLWKLL 81 LL Sbjct: 102 SSDYLL 107 >gi|163938818|ref|YP_001643702.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861015|gb|ABY42074.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 112 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE L+Q+ + +G + I +E G+ + ++++ + LD L +L Sbjct: 7 LGERIRFLRKEKNLSQERLGELSGIHTNHIGAIERGEKNVTLESLAKVTKGLDITLEELF 66 Query: 82 K 82 + Sbjct: 67 R 67 >gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus N315] gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus MW2] gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp. aureus JH1] gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp. aureus Mu3] gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117] gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102] gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754] gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus Mu50] gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102] gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117] gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981] gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754] gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11] gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46] gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus T0131] gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 179 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + K Sbjct: 4 GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63 >gi|110834231|ref|YP_693090.1| transcriptional regulator [Alcanivorax borkumensis SK2] gi|110647342|emb|CAL16818.1| transcriptional regulator, putative [Alcanivorax borkumensis SK2] Length = 71 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F R +RK+ L+Q+E+ + G +S++ +E G+ I + + ++ L P Sbjct: 9 FGAKVRAMRKQKGLSQEELASLAGLDRSYMGHIERGEKNITLLKIYQISDALSLP 63 >gi|224826557|ref|ZP_03699658.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224601158|gb|EEG07340.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 81 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R +Q+E+ R ++++S +E G+S I +D++ LA L+T +LL Sbjct: 7 FGRVVREARLAKGWSQEELAERASLHRNFVSLVERGQSKIALDSLFFLADALETTASELL 66 Query: 82 K 82 + Sbjct: 67 R 67 >gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 179 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +R E LTQ+E+ +R+ + +IS++E ++ ++D+++ + L T Sbjct: 4 GNKIREMRIEKGLTQEELADRSELTKGFISQIERDLTSPSVDSLLDILEALGTDP 58 >gi|126442387|ref|YP_001062902.1| XRE family transcriptional regulator [Burkholderia pseudomallei 668] gi|126221878|gb|ABN85383.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 668] Length = 94 Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ +LL Sbjct: 8 FGAAIRQLREARAWSQEQLAEHPGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|331085708|ref|ZP_08334791.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406631|gb|EGG86136.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 129 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R + ++ +E+ + +IS +E K +++++I + + L L +L Sbjct: 7 LIGIRIKETRNQQGISAEELAELANLSSVYISYIENAKRKPSLESLIKICNALGITLDEL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM 5427] gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 176 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + NN + RK+ KLTQKE+ + G A+ I + E G+ N++ + LA TL ++L Sbjct: 1 MLGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] Length = 185 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RKE L+Q+E+ R G S IS +E GK + ++ ++ + + L + Sbjct: 7 GKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFFT 66 >gi|167645954|ref|YP_001683617.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348384|gb|ABZ71119.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ L Q E+ + G +++S +ETGK +++ + LA L P L Sbjct: 6 VVGANVRALREARGLPQDELAHLAGVHPTYLSGVETGKRNLSMKVLERLASALRVPETDL 65 Query: 81 L 81 + Sbjct: 66 V 66 >gi|293400397|ref|ZP_06644543.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306797|gb|EFE48040.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 66 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R++RK+ LTQ+E+ Q +IS++E G +++ + +A L LL Sbjct: 7 FGRNVRSLRKQRHLTQEELAALCHVHQHYISDIERGVRNVSLRVVETIARALGVHEKDLL 66 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R N R +R LT KE+ +T + S++S++E G S ++I + +AH L+T L Sbjct: 5 KRKDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETEL 64 >gi|83746365|ref|ZP_00943417.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] gi|83726906|gb|EAP74032.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] Length = 119 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R IL + R A +Q+ + +++IS +E G + + Sbjct: 14 KRPDPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 70 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 ++ + L + L+ L +L P Sbjct: 71 VETLANLCYALNVTLAELFGP 91 >gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] Length = 201 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L M + IR+ L+Q+E+ R G S IS +E G+ + ++ ++ + Sbjct: 11 PSLDSHMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQVSPSVQSLERILTAF 70 Query: 74 DTPLWKLLKP 83 L + P Sbjct: 71 PLSLAEFFSP 80 >gi|291520893|emb|CBK79186.1| Predicted transcriptional regulator with C-terminal CBS domains [Coprococcus catus GD/7] Length = 87 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R R KL Q+++ +T ++I +E G+ +++ I + + L Sbjct: 7 GKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVS 60 >gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 199 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 29/55 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R +RK +T + + TG +Q+ +S++E G + + + LAH LD P Sbjct: 18 VGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAHGLDVP 72 >gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 76 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 36/59 (61%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ RK+ L+Q+++ ++ GF +++IS +E GK ++ N++ +A L+ + +L Sbjct: 8 LGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLEASVSEL 66 >gi|187921899|ref|YP_001893488.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] gi|187720337|gb|ACD21559.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 79 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F R++R ++Q + N +S+IS LE G + ++ M LA L+ Sbjct: 4 PANYAFGKALRSLRARRGMSQYSLANEANLDRSYISLLERGHRSPTLETMCSLAQALNVS 63 Query: 77 LWKLL 81 + +++ Sbjct: 64 IGEMI 68 >gi|218885897|ref|YP_002435218.1| XRE family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756851|gb|ACL07750.1| transcriptional regulator, XRE family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 101 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R+ +Q+++ R +++I +E G+ + + N++++A + + Sbjct: 13 MALGTAIRQFREALGWSQEQLAERVELHRTYIGGVERGERNLCLLNILVIAKAMGMSPGR 72 Query: 80 LL 81 L+ Sbjct: 73 LI 74 >gi|262371152|ref|ZP_06064473.1| RtrR protein [Acinetobacter johnsonii SH046] gi|262313882|gb|EEY94928.1| RtrR protein [Acinetobacter johnsonii SH046] Length = 70 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE K TQ+ + + G +S++ +E G+ I + + +AH L + LL Sbjct: 9 GQLIRKKRKEKKFTQEALALQCGIDRSYLGRIERGEVNITVLKLYEIAHILKVEPYHLL 67 >gi|264677637|ref|YP_003277543.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208149|gb|ACY32247.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 99 Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R +Q+ + G +S++ +E G+ + + NM + LD + Sbjct: 3 KAFGQAVRECRSARGFSQEGFAHYCGLDRSYMGGVERGERNVTLVNMERIIAALDMKPSE 62 Query: 80 LL 81 Sbjct: 63 FF 64 >gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1] gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1] Length = 181 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ R S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] Length = 181 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LTQ+E+ RT ++ +IS++E ++ +++ + L Sbjct: 5 GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 >gi|302186784|ref|ZP_07263457.1| XRE family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 74 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F IRK +Q+ + +G A+S++ +E G+ I + N+ LA L Sbjct: 6 RTAFGLRLIEIRKAKGWSQERLALESGLARSYLGGVERGQRNIALLNIYKLAEALAVTPG 65 Query: 79 KLL 81 L+ Sbjct: 66 SLM 68 >gi|288924207|ref|ZP_06418242.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288344443|gb|EFC78937.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 208 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R++ L+ E+ + G A+ +S+LE +D + +A L P+ +L Sbjct: 15 VVARNIRLLRQQRGLSLAELARQAGLAKQTLSKLEQSSGNPTVDTLFSIASALGVPVTRL 74 Query: 81 L 81 + Sbjct: 75 V 75 >gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 181 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+R + LTQ+E+ RT ++ +IS++E S+ +I+ + L L Sbjct: 5 GNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREISSPSIETLFSLLEVLGISAKDFF 63 >gi|303229713|ref|ZP_07316499.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302515610|gb|EFL57566.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 127 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-- 58 MP +R+ ++ M + +R ++Q+++ + G ++S++S+LE G Sbjct: 8 MPAYRRNHYQDPK-FQQQYMCLGHKISTLRTSMGISQRQLADVVGISRSYLSKLECGYGI 66 Query: 59 STINIDNMIILAHTLDTPLWKLL 81 S ++I+ + +A+ L+ +LL Sbjct: 67 SGVSIEVVFKIAYCLNVSTSQLL 89 >gi|293980676|ref|YP_003543434.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677693|dbj|BAI99208.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 77 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N R R + +++Q E+ R+G S++S +E G+ ++ + +A L + Sbjct: 14 MLVGRNCRERRVQLEMSQTELSERSGVTASYLSRIENGRGNPTLELLDSIAGALGCHVVD 73 Query: 80 LLK 82 L + Sbjct: 74 LFR 76 >gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 183 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 183 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 183 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|84388954|ref|ZP_00991162.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01] gi|84377018|gb|EAP93890.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01] Length = 70 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RK+ ++Q ++ +S++ +E G+ I +D + LA L + +LL Sbjct: 8 FGMKLREVRKKNGISQDKLALIADIDRSYVGRIERGEVNITLDKVYCLAQALKCNVTELL 67 >gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 189 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ A L+Q + +G ++ I LE G + I++ + LA L L+ Sbjct: 18 VGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTNISLSRLDRLAEALGVGFADLV 77 Query: 82 K 82 + Sbjct: 78 R 78 >gi|16126939|ref|NP_421503.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|13424293|gb|AAK24671.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] Length = 74 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ L Q E+ + G +++S +ETGK + + + LA L P L Sbjct: 11 VVGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLASALRVPETDL 70 Query: 81 L 81 + Sbjct: 71 V 71 >gi|163735623|ref|ZP_02143054.1| DNA-binding protein, putative [Roseobacter litoralis Och 149] gi|161391051|gb|EDQ15389.1| DNA-binding protein, putative [Roseobacter litoralis Och 149] Length = 70 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N ++ R+ ++Q+E+ +R + ++ ++E K + ++ + +A L+ Sbjct: 4 KERVGLNLQDARRAKGISQEELAHRASVNRGYVGKIENAKYSASLTTLEKIAQALNIDPS 63 Query: 79 KLLKP 83 +LLKP Sbjct: 64 ELLKP 68 >gi|254190407|ref|ZP_04896915.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] gi|157938083|gb|EDO93753.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] Length = 109 Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 R + LS + + R +Q+ + +++IS +E G + +++ Sbjct: 4 PRSDTSLSRPAPIS-IALGKRIKQCRHAVDKSQETLAFEAHVDRTYISAIERGVANPSVE 62 Query: 65 NMIILAHTLDTPLWKLLKP 83 + + H L+ L +L P Sbjct: 63 TLANICHALNVTLSELFAP 81 >gi|226309394|ref|YP_002769354.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226188511|dbj|BAH36615.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 137 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D R + R +R++ T ++ + G ++ ++SE+E GK + + + Sbjct: 33 DPAVAVRKPPLIREAYGRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERGKKEPSSEIL 92 Query: 67 IILAHTLDTPLWKLL 81 + L PL LL Sbjct: 93 RAICEALGMPLEHLL 107 >gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 192 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P N + +R+ L+ E+ ++G +++ +S+LE+G S ID + Sbjct: 3 PQSPKKT---NEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEA 59 Query: 69 LAHTLDTPLWKLL 81 +A L PL L Sbjct: 60 IAIALGFPLGDLF 72 >gi|255316571|ref|ZP_05358154.1| hypothetical protein CdifQCD-7_19592 [Clostridium difficile QCD-76w55] Length = 227 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E L +AI E+ F+ N N RK+ +TQKEI +TG Q IS +ETG + N+I Sbjct: 28 ERMLVNAIHVEKD-FIQNLVNFRKKQNITQKEIAEKTGLTQQAISGIETGGRKPTLINLI 86 Query: 68 ILAHTLDTPLWKLL 81 + + L Sbjct: 87 RYLQGIGININDLF 100 >gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 123 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 36/60 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RKE LTQ+++ TG + S IS+LE GK T +I+ + L++ + + +L Sbjct: 1 MLGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDEL 60 >gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] Length = 180 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ + +R + LTQ+E+ RT ++ +IS+LE S+ ++D + L + Sbjct: 4 GSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCAPKDFFE 63 >gi|300690029|ref|YP_003751024.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299077089|emb|CBJ49709.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R IL + R A +Q+ + +++IS +E G + + Sbjct: 8 KRPEPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 64 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 ++ + + + L+ L +L P Sbjct: 65 VETLANICYALNVTLAELFGP 85 >gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 171 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E L+ E+ R G + +SE+E G ++ + L LD PL LL Sbjct: 6 VGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPLDVPLTALL 65 >gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 158 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62] gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8] gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8] gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 183 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + IR+E KLT E+ TG ++ +S++E G + I+ + +++ L+ P L Sbjct: 6 IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|257455466|ref|ZP_05620700.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447129|gb|EEV22138.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 87 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + F R IRK+ ++Q+++ +S++ ++E G+ + + + ++ L Sbjct: 14 PQIVAFGKRIRTIRKQKGISQEKLALLAQIDRSYMGKIERGEFNLTLTKIYQISEALQVS 73 Query: 77 LWKLLK 82 + L + Sbjct: 74 VVTLFQ 79 >gi|255103016|ref|ZP_05331993.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + KLTQ+ + + + +S +ETG S++++ ++ +A+TL + + Sbjct: 6 KFIGQRIKIARIKKKLTQEVLSEKINVSPQHVSNIETGNSSVSLPTLVAIANTLGVSVDE 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|291536677|emb|CBL09789.1| transcriptional regulator, XRE family [Roseburia intestinalis M50/1] Length = 68 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RKE ++Q+++ +++++ +E+GK ++ ++ + LD + K Sbjct: 7 GSRIKELRKEKGISQEKLAFSADLDRTYVAGVESGKRNPSVKSLEKILVALDVSFEEFFK 66 >gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] Length = 141 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +RK L+Q+E+ + G ++ +S+ ETG+S +I+ +LA + Sbjct: 1 MSFADNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDD 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|148253025|ref|YP_001237610.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405198|gb|ABQ33704.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 75 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N R R + ++TQ+E+ G + ++ +E G + ++ + +A L Sbjct: 4 KEIMAVNLRRKRHDLEMTQEELAEHAGLSAHYVGAIERGDVSASVTVLGQIADALGIEPG 63 Query: 79 KLLK 82 LL+ Sbjct: 64 DLLR 67 >gi|222080797|ref|YP_002542525.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221725476|gb|ACM28565.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 189 Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +RK A L+Q + +G ++ I +E G + I++ ++ LA L L++ Sbjct: 20 NLRRLRKSAGLSQTALAEASGISRRMIIAVEAGDANISLSSLDKLAAALGVDFVDLVR 77 >gi|121595882|ref|YP_987778.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|120607962|gb|ABM43702.1| transcriptional regulator, XRE family [Acidovorax sp. JS42] Length = 79 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F IRK +Q+ + +G A+S++ +E G+ I + N+ LA L Sbjct: 6 RLRFGLKLIEIRKTRGWSQERLALESGLARSYLGGVERGQRNIALLNIFKLAEALGVEPS 65 Query: 79 KLLK 82 LL+ Sbjct: 66 VLLE 69 >gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 179 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++R LTQ+E+ RT ++ +IS++E +S+ +++ + L + Sbjct: 4 GSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPADFFR 63 >gi|241662630|ref|YP_002980990.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240864657|gb|ACS62318.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 107 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + + + I + R EA+LTQ+++ + +S++S +E G + +I Sbjct: 6 KPKASKDKRNPIATA---IGKRVKVCRVEAELTQEQLAHEALVDRSYVSSIERGVANPSI 62 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + + L + + L +L +P Sbjct: 63 ETLANLCYCMGITLSRLFEP 82 >gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6] gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6] Length = 93 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L+D + + R R +R A L+Q ++ +R G IS E G I+ID +A Sbjct: 20 LADQVQQHRWDVGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIA 79 Query: 71 HTLDTPLWKLLK 82 L P W+L + Sbjct: 80 TALGQPSWRLFR 91 >gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 179 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + + Sbjct: 4 GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFE 63 >gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] Length = 183 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + +R+E KL+ +E+ +G ++S ++++E G+ I + L++ + P Sbjct: 6 QIIAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGNPTISTLWKLSNGMGVPFDA 65 Query: 80 L-LKP 83 L ++P Sbjct: 66 LTVRP 70 >gi|225378330|ref|ZP_03755551.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM 16841] gi|225209767|gb|EEG92121.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM 16841] Length = 147 Score = 60.8 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R+ A LTQK++ +TG QS IS+LE G + +I + LA +D L Sbjct: 84 LASSLARAREYAMLTQKQLSEKTGIYQSDISKLERGNANPSILTLKRLADAMDMTLKIEF 143 Query: 82 KP 83 P Sbjct: 144 VP 145 >gi|330968428|gb|EGH68688.1| XRE family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 50 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 31/47 (65%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +TQ+E +R GFA++++S +ETG + ++D + LA L++ L L Sbjct: 1 MTQEEFADRCGFARTYMSRIETGGANPSLDAINTLAVALNSDLESLF 47 >gi|94496789|ref|ZP_01303364.1| transcriptional regulator, XRE family protein [Sphingomonas sp. SKA58] gi|94423802|gb|EAT08828.1| transcriptional regulator, XRE family protein [Sphingomonas sp. SKA58] Length = 73 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 38/64 (59%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R++ ++TQ+E+ +RTG + ++ +E + +++I + LA +D Sbjct: 4 KDVLARNLRLLRQKKEITQEELADRTGLSSRYVGSIERARVSVSITVLGKLALAMDVDPC 63 Query: 79 KLLK 82 +L++ Sbjct: 64 ELIR 67 >gi|332527240|ref|ZP_08403308.1| SgrAlc control protein [Rubrivivax benzoatilyticus JA2] gi|332111660|gb|EGJ11641.1| SgrAlc control protein [Rubrivivax benzoatilyticus JA2] Length = 86 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D HL + ER F R +R+ +Q+ + R ++++ E+E + ++ Sbjct: 6 DARHLPHEGVAER--FGRTVRRLRQARGWSQELLAARAELNRTYMGEIERASAMPSLQTA 63 Query: 67 IILAHTLDTPLWKLLK 82 LA L+ PL +LL+ Sbjct: 64 AKLAQALEVPLAELLQ 79 >gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 121 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR + LTQ+E+ R S+I ++E G ++ + +A L+ L +L+ Sbjct: 11 GKRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKALNVSLDYVLE 70 >gi|260221082|emb|CBA29291.1| hypothetical protein Csp_A11410 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 97 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK KLTQ E + A++++S +E+GK+ ++ + ++ L PL KLL Sbjct: 5 LGLRIEENRKIQKLTQIEFAEKCNIARNYLSTIESGKANPSLAVLFTISDQLGVPLCKLL 64 Query: 82 K 82 + Sbjct: 65 Q 65 >gi|39935312|ref|NP_947588.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649164|emb|CAE27684.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] Length = 81 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RN R+ +L+Q+E+ +R +++IS LE +ID + LAH L Sbjct: 4 REVLALNLRNCRQAQELSQEELAHRAEIDRTYISSLERCVYAASIDVLDRLAHVLGVEAA 63 Query: 79 KLLK 82 LL+ Sbjct: 64 DLLR 67 >gi|257061988|ref|YP_003139876.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256592154|gb|ACV03041.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 333 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IR L+Q+ + +++IS LE GK ++ + + LD + ++ Sbjct: 9 LGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEIF 68 Query: 82 K 82 + Sbjct: 69 Q 69 >gi|218248928|ref|YP_002374299.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169406|gb|ACK68143.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 333 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IR L+Q+ + +++IS LE GK ++ + + LD + ++ Sbjct: 9 LGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEIF 68 Query: 82 K 82 + Sbjct: 69 Q 69 >gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 95 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA P+ +LL Sbjct: 8 FGAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67 Query: 82 KP 83 P Sbjct: 68 PP 69 >gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 357 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P + + L I N R +R + L+ + + +G +++ +S++E G+ST I+ + Sbjct: 165 APQDASSALTG--IVGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQSTPTINVLW 222 Query: 68 ILAHTLDTPLWKLL 81 +A L P L+ Sbjct: 223 KIARALGVPFSALI 236 >gi|319651076|ref|ZP_08005210.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] gi|317397246|gb|EFV77950.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] Length = 117 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +N R +RK+ KLTQ+E+ +G S+++ +E G+ I + + + L + Sbjct: 9 KLVGSNIRELRKQKKLTQEELAELSGLQYSFLAGVERGERNITLQTLEKIIVGLKETPSR 68 Query: 80 LL 81 L Sbjct: 69 LF 70 >gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 197 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 +L+D + M N R +RK LT E+ R G + +IS++E G S+ +ID++ Sbjct: 4 AAENLADLNASDAMALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDL 63 Query: 67 IILAHTLDTPL 77 LA D P+ Sbjct: 64 RALAAAFDVPI 74 >gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] Length = 213 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + + R R +R+ LT + I +R+G A S IS++E G D Sbjct: 8 SSSPDTPPAEQGRAELGQRIRQLREARGLTLQTIADRSGLAISTISKIERGLMAPTYDRF 67 Query: 67 IILAHTLDTPLWKLLKP 83 LA L + L P Sbjct: 68 SGLARGLGVDVTHLFSP 84 >gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 107 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I +++RK+A LTQ E+ + + + E+E G+ ++++ L+ LD L K Sbjct: 6 EILGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGNPTLESLHNLSVALDISLMK 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427] gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum DSM 5427] Length = 179 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ LTQ+E+ +R ++ +IS++E G ++ +I +I + L T L Sbjct: 4 GAKINQLRKKNGLTQEELADRCELSKGFISQVERGLTSPSIATLIDILECLGTNLKDFF 62 >gi|284053790|ref|ZP_06384000.1| hypothetical protein AplaP_20232 [Arthrospira platensis str. Paraca] gi|291570058|dbj|BAI92330.1| type I restriction-modification system S subunit [Arthrospira platensis NIES-39] Length = 82 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ ++Q+E+ R +++IS LE G ++ ++ LA L + +LL Sbjct: 16 IRQHRRAVGISQEELGLRCDLDRTYISGLERGVRNPSLTAIVALAEGLGITVSQLL 71 >gi|218532605|ref|YP_002423421.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218524908|gb|ACK85493.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 86 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R +R L+Q+ + G ++++ LE +D + +A L PL Sbjct: 4 RALVAWNLRRVRVAQGLSQERLAADAGVDRAYLGGLERQAENPTVDLLDKVAEALAVPLG 63 Query: 79 KLL 81 +L Sbjct: 64 ELF 66 >gi|119512219|ref|ZP_01631308.1| Transcriptional Regulator, XRE family protein [Nodularia spumigena CCY9414] gi|119463117|gb|EAW44065.1| Transcriptional Regulator, XRE family protein [Nodularia spumigena CCY9414] Length = 81 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R E ++Q+E+ R +++IS +E G ++ ++ LA+ L + LL Sbjct: 12 LGSLVRKCRTEQGISQEELGLRANLDRTYISGVERGVRNPSLTALVSLANGLGISVSILL 71 Query: 82 K 82 + Sbjct: 72 E 72 >gi|259416828|ref|ZP_05740748.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259348267|gb|EEW60044.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 216 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 5 KRDEPHLSDAI---------LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 K+D P SD + R+ + +R A +T ++ RTG A S I ++E Sbjct: 6 KKDSPFSSDVQAALLDDSEKQQIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIE 65 Query: 56 TGKSTINIDNMIILAHTLDTPLWKLL 81 GK + + +N++ LA L KL+ Sbjct: 66 NGKVSPSFENLLRLARGYGVGLEKLI 91 >gi|87308687|ref|ZP_01090827.1| transcriptional regulator, XRE family protein [Blastopirellula marina DSM 3645] gi|87288779|gb|EAQ80673.1| transcriptional regulator, XRE family protein [Blastopirellula marina DSM 3645] Length = 73 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R + +Q+ + +++I +E G+ + + N+ +A L L +L+ Sbjct: 11 FGARVRELRLQQDYSQEAFAHACELDRTYIGGIERGERNLALRNIERIAEALGVTLAELM 70 Query: 82 K 82 K Sbjct: 71 K 71 >gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 255 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE +Q+ + G ++ +S+ E +++ + DN+I LA L +LL Sbjct: 6 ANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEASPDTDNLIELAKLYGISLDQLL 64 >gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] Length = 181 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LTQ+E+ RT ++ +IS++E ++ +++ + L Sbjct: 5 GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILEVLGCAPKDFF 63 >gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 205 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R++ L+ + RTG ++ ++S +E + +ID+++ +A + + Sbjct: 5 RFPIGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGVSPSIDSLVAIADAVGLAVA 64 Query: 79 KLL 81 + Sbjct: 65 DVF 67 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK- 79 + R +R+E ++ K++ +TG S++S++E + +I ++ +A LD P++ Sbjct: 1 MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYF 60 Query: 80 LLKP 83 LL P Sbjct: 61 LLNP 64 >gi|262370916|ref|ZP_06064240.1| DNA methyltransferase [Acinetobacter johnsonii SH046] gi|262314278|gb|EEY95321.1| DNA methyltransferase [Acinetobacter johnsonii SH046] Length = 68 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK KL+Q+ + +S++ +E G+ + I+ + LA LD P+ LL Sbjct: 8 FGLKVREQRKLKKLSQERLALLCNIDRSYMGRIERGEVNVTIEKVYELAKALDIPVINLL 67 >gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon 472 str. F0295] Length = 71 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L ER ++R+EAKL+Q E+ + G + IS +E+G+ ++ +D + +A L Sbjct: 5 KELAERERIGQKIASMRQEAKLSQAELGKKCGLERFHISRIESGRHSVGLDTLAAIARAL 64 Query: 74 DTPL 77 L Sbjct: 65 GKTL 68 >gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F ++R E LTQ+E+ G A S IS+ E+GKS + ++ LA L + Sbjct: 3 ETFAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADALGVSADE 62 Query: 80 L 80 L Sbjct: 63 L 63 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R A ++K++ TG + ++++E G + +++ +AH L T + L Sbjct: 80 FSSRLIAARANAAFSRKKLCEATGLSGDDLADMELGDLLPSPEDVKKIAHALGTSVDSL 138 >gi|296450733|ref|ZP_06892486.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296260577|gb|EFH07419.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 130 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R ++ A+ + + R+ LTQ+++ + + +S +E G + Sbjct: 16 RPKNSSKGGAAM--DLKAVGQRIKMAREAKGLTQEDLAAMVELSPTHVSVIERGLKAAKL 73 Query: 64 DNMIILAHTLDTPLWKLL 81 D + +A+ L+ LL Sbjct: 74 DTFVAIANALEVSADSLL 91 >gi|187477387|ref|YP_785411.1| transcriptional regulator [Bordetella avium 197N] gi|115421973|emb|CAJ48494.1| putative transcriptional regulator [Bordetella avium 197N] Length = 177 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R +R E L+Q + R G ++ I LE+G++ I++ + ++A LD Sbjct: 2 SEPVLEHVSANVRRLRAERGLSQTALAARAGLSRRMIVGLESGEANISLAKLGLIATALD 61 Query: 75 TPLWKLL 81 +L+ Sbjct: 62 VNFIELV 68 >gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + R R A L+ E+ R G A+S +S+LE+G +++ + L LD P + Sbjct: 25 EIIAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGNPSVETLWALGVALDVPFSR 84 Query: 80 LLKP 83 L++P Sbjct: 85 LVEP 88 >gi|299537817|ref|ZP_07051106.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298726796|gb|EFI67382.1| putative HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 184 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 37/64 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++F N + IR+ KL+ +++ +G +++ I ++E G+S+ + + +A+ L + Sbjct: 6 LVFARNLKAIREREKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLRVSFTE 65 Query: 80 LLKP 83 L+ P Sbjct: 66 LMHP 69 >gi|160894239|ref|ZP_02075016.1| hypothetical protein CLOL250_01792 [Clostridium sp. L2-50] gi|156863940|gb|EDO57371.1| hypothetical protein CLOL250_01792 [Clostridium sp. L2-50] Length = 120 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R R KL Q+++ +T ++I +E G+ +++ I + + L Sbjct: 16 GKNIRKFRLAKKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKILNALGVS 69 >gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] Length = 179 Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + Sbjct: 4 GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSASDFFQ 63 >gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 190 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R RK KLT KE+ RTG + +IS++E ++ ++ ++ +A D P++ L Sbjct: 1 MLGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVL 60 Query: 81 L 81 + Sbjct: 61 M 61 >gi|225619797|ref|YP_002721054.1| putative transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225214616|gb|ACN83350.1| putative transcriptional regulator [Brachyspira hyodysenteriae WA1] Length = 139 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R IRK T EI +G + ++ +E GK I+I N+ +A+ L+ P+ L Sbjct: 39 VGNNIRAIRKSQTKTISEIAEMSGISAKYLQSVEVGKRNISITNLNKIANALNVPIGILF 98 >gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 80 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + F R R++ L+Q+++ RT S+I ++E G+ +++ N++ +AH L Sbjct: 8 PLSPATGEFGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHAL 67 Query: 74 DTPLWKLL 81 DT L+ Sbjct: 68 DTDAGGLV 75 >gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 216 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 R++R++ ++ +++ R+G +++++S+LE ++D ++ +A L L +L Sbjct: 3 VGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVILRIATALGVSLTEL 62 Query: 81 LKP 83 L P Sbjct: 63 LGP 65 >gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] Length = 185 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R LTQ+E+ +R + +IS+LE G+ + ++ ++ L L T K Sbjct: 11 GKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQVSPSVVTLLDLIECLGTTASDFFK 70 >gi|149179178|ref|ZP_01857746.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] gi|148841996|gb|EDL56391.1| transcriptional regulator, XRE family protein [Planctomyces maris DSM 8797] Length = 160 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 5 KRDEPHLSDAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + D H +++ M F RK AK++Q+ + +TG QS IS LE+GK + + Sbjct: 80 RLDLDHEPGEEIQKWMNFVGKKIHRYRKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSN 139 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + +A LD + KLL P Sbjct: 140 ATLKKIAAALDIEI-KLLDP 158 >gi|134288001|ref|YP_001110165.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132651|gb|ABO60277.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 79 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 36/66 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R F R +R++ L+QK++ G +++IS LE G+ + +++++ LA L Sbjct: 2 ERHNRCFGRVLRRLRRDMHLSQKDLAVHAGVDRTYISLLELGRRSPTLESIVALAAALKI 61 Query: 76 PLWKLL 81 PL +L Sbjct: 62 PLSRLF 67 >gi|163797612|ref|ZP_02191561.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199] gi|159177087|gb|EDP61649.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199] Length = 125 Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 7 DEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 DE + A + +R++ + R R+ L+ E+ R G +Q+++S+LETGK ++ Sbjct: 49 DEEEMLPAAMVDRLLAGESALRVWREHRGLSASELAERAGLSQAYVSQLETGKRDGSVAA 108 Query: 66 MIILAHTLDTPLWKL 80 M LA L + L Sbjct: 109 MGSLAQALGVMIDDL 123 >gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 135 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK A LTQ E+ +T ++S+I ++E + ++ + ++A T L Sbjct: 1 MSIGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYNPSLSTLELIAKATGTSLSA 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|168212390|ref|ZP_02638015.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170716178|gb|EDT28360.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 180 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M + +RK+ KLTQK + TG ++S++S++E + + D + LA +L L Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDL 58 >gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 112 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+ +++TQ+++ + +I LE G + +++ + +A L L L+ Sbjct: 11 GDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGTRSPSLETLAKIAQLLRVSLDDLV 69 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + LTQ+ I ++ G +S +ETG +++++ ++ +A+TL + Sbjct: 6 KAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLTVSVND 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 119 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +ER+I + RKE ++Q E+ R + ++S++E GKS + +I ++ L Sbjct: 5 KERLIPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64 Query: 76 PLWKLLKP 83 KLL+P Sbjct: 65 STDKLLRP 72 >gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 108 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R++R+ +TQ+++ R G + + E+E G+ + N+ L+ L+ L Sbjct: 6 KVFGKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGRGNPTLVNIERLSAALEEDLAS 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|251777920|ref|ZP_04820840.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082235|gb|EES48125.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 376 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L ER ++ + R L+Q+++ + G + IS E ++ N++ L+ TLD Sbjct: 2 SLAERKVYGQRIKQGRILRGLSQEQLGKKVGVTRQAISNCEKDNINLSTTNLLKLSETLD 61 Query: 75 TPL 77 PL Sbjct: 62 LPL 64 >gi|171322013|ref|ZP_02910893.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171092688|gb|EDT37979.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 73 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R+ +Q+++ G +S++ E+E G++ +I +A + + LL Sbjct: 8 FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFEVSISTLL 67 >gi|152977654|ref|YP_001377171.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026406|gb|ABS24176.1| putative transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 120 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R +RK L+Q+E+ + ++I ++E G+ + + ++ + LD L + Sbjct: 7 IIGLQIRILRKSKNLSQEELAFKANLHPTYIGQVERGEKNLTVSSLNTITTALDITLEEF 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] Length = 181 Score = 60.4 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LTQ+E+ RT ++ +IS++E ++ +++ + L Sbjct: 5 GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 >gi|260888382|ref|ZP_05899645.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838303|ref|YP_004412883.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260861918|gb|EEX76418.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329746067|gb|AEB99423.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 98 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + RK KLTQKE+ RTG +Q+ IS +ETG++ ++ M LA L L + P Sbjct: 32 RSLLEARKVTKLTQKELSARTGISQADISRIETGEANPSMQTMKRLAEGLGMQLRVMFVP 91 >gi|284042154|ref|YP_003392494.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946375|gb|ADB49119.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 86 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D IF R +R LTQ+ + +G +++I +E G+ M+ LA Sbjct: 3 ADKQSNAHRIFGRAVRELRARRSLTQERLGFVSGLHRNYIGAIERGEINPTFRIMLKLAR 62 Query: 72 TLDTPLWKLLK 82 LD PL ++++ Sbjct: 63 GLDVPLAEMIQ 73 >gi|197303466|ref|ZP_03168505.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC 29176] gi|197297464|gb|EDY32025.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC 29176] Length = 68 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +R++ L+Q++ + +++ + +E GK ++I N+ +A + L +L Sbjct: 6 FANRIKELRQQQGLSQEKFALKIDMDRTYYASVEAGKRNVSIKNIKKIADGFEISLEELF 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 123 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ L+++E G + +I +LE G+ +++ +I +A+ L L L+ Sbjct: 9 GKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLHVSLDYLV 67 >gi|308071047|ref|YP_003872652.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860326|gb|ADM72114.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 129 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RK +TQ+++ + S+I +LE G+ + I + +A L+T ++ Sbjct: 5 KLIGTKIRQFRKLRDITQEQLAEASDSTGSYIGKLERGEVNVQIKTLEKIAEALNTNVFA 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 153 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +++ P D + + I N R +RK LTQ+ + G S IS +E G+ ++ Sbjct: 35 EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 94 Query: 64 DNMIILAHTLDTPLWKLL 81 +MI L L+ +L+ Sbjct: 95 PDMIKLCRALEADPVELV 112 >gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 111 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK+A LTQ ++ + G +++S +E G ++ I LA+ L Sbjct: 4 KYLGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGAQLPRLETFINLANVLSVSADD 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|291528282|emb|CBK93868.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 104 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ LTQ+E+ + + +S +E G +D + +A+ LD Sbjct: 4 KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|217968788|ref|YP_002354022.1| XRE family transcriptional regulator [Thauera sp. MZ1T] gi|217506115|gb|ACK53126.1| transcriptional regulator, XRE family [Thauera sp. MZ1T] Length = 93 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R +R +Q+ + +G +++++ +E I++DN+ LA L+ Sbjct: 17 RRALAANVRRLRSARGWSQEVLAFESGLHRTFVAHVERAARNISLDNIARLAVALEVTAP 76 Query: 79 KLLK 82 LL+ Sbjct: 77 DLLQ 80 >gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] Length = 177 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R LTQ+E+ +R + +IS++E ++ +I ++ + L T L + Sbjct: 4 GKKIKELRILKGLTQEELADRAELTKGFISQVERNHTSPSIATLVDILQCLGTDLKNFFE 63 >gi|302530030|ref|ZP_07282372.1| predicted protein [Streptomyces sp. AA4] gi|302438925|gb|EFL10741.1| predicted protein [Streptomyces sp. AA4] Length = 180 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R A + + +G + +SELE G+ +D + +A L PL L Sbjct: 15 VVGTRIRTLRTRAGVGLTTLAADSGLGKGTLSELENGRRNPTLDTLFAIATALSIPLSDL 74 Query: 81 L 81 L Sbjct: 75 L 75 >gi|167855811|ref|ZP_02478564.1| transcriptional regulator [Haemophilus parasuis 29755] gi|167853090|gb|EDS24351.1| transcriptional regulator [Haemophilus parasuis 29755] Length = 77 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R + +Q+ + N ++++S +E + +++ N+ LA L P W+LLK Sbjct: 2 AYNIQTLRVQKGWSQERLENECELDRTYVSAVEHCRWNVSLSNIEKLATALSCPAWQLLK 61 >gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] Length = 72 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + +R K+TQ+++ R G IS +E G + D + LA L P+ Sbjct: 4 KKQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQ 63 Query: 79 KLL 81 L Sbjct: 64 SLF 66 >gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 179 Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + K Sbjct: 4 GNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63 >gi|2444013|gb|AAB71491.1| ORF6 [Bacillus pumilus] Length = 211 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N N RK KL+Q+ + + G ++ IS+ ET +S ++DN+I LA D+ + + Sbjct: 2 MSLGSNISNKRKSLKLSQEYVAEQLGVSRQAISKWETNQSEPSMDNLIRLAELFDSDIKE 61 Query: 80 LLKP 83 L+ P Sbjct: 62 LVSP 65 >gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1199 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R++R+ LTQ + R+G + +++E G + ++ + + L L Sbjct: 9 LFGRRLRHVRRLCGLTQARLAERSGVSLEHCNKIERGAAAPSLAVIHAFSRALGVEPATL 68 Query: 81 LKP 83 P Sbjct: 69 FLP 71 >gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 201 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R++RK+ +T + TG +Q+ +S++E G + + + LAH LD P Sbjct: 20 VGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIP 74 >gi|311070540|ref|YP_003975463.1| XRE family transcriptional regulator [Bacillus atrophaeus 1942] gi|1293618|gb|AAC45059.1| BglII control element [Bacillus subtilis] gi|310871057|gb|ADP34532.1| transcriptional regulator, XRE family protein [Bacillus atrophaeus 1942] Length = 77 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F +IR++ L+Q+++ + +++I +E G+ +++ N+ L++ L + Sbjct: 4 RERFGKTVSSIRRKQNLSQEKLAEISKLDRTYIGGVERGERNLSLLNIERLSNALQMEIS 63 Query: 79 KLLK 82 ++ + Sbjct: 64 EVFR 67 >gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 208 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + +RKE L+Q+++ ++ IS+ ET K+ +DN+ LA + L + Sbjct: 18 MTLGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAEPGVDNLKALADLYEVTLDQ 77 Query: 80 L 80 L Sbjct: 78 L 78 >gi|302340438|ref|YP_003805644.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637623|gb|ADK83050.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 109 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N RN RK L+Q E+ R + ++++E + + D + LA L ++ Sbjct: 8 ELLATNIRNARKSQGLSQMELAERAEISTGHMNDIERSRRWLGADTFVRLASALQLEPYQ 67 Query: 80 LLKP 83 LL P Sbjct: 68 LLLP 71 >gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC 8492] gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 161 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + IL+ER N +RK+ +TQ+E+ N G + I+++E G ++ID + + Sbjct: 10 EKILKERERIGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSIDILSKVTSA 69 Query: 73 LD 74 L Sbjct: 70 LG 71 >gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 181 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676] Length = 181 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842] gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842] gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|323467533|gb|ADX71219.1| Predicted transcription factor [Lactobacillus helveticus H10] Length = 77 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R KL+Q+ + G +++I +E G+ +I++ ++ L LD +L Sbjct: 10 FGENLRALRLSRKLSQERLSELVGLDRTYIGLVERGEKSISLVYLVKLMSALDVNAEELF 69 Query: 82 K 82 + Sbjct: 70 R 70 >gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +++ P D + + I N R +RK LTQ+ + G S IS +E G+ ++ Sbjct: 23 EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 82 Query: 64 DNMIILAHTLDTPLWKLL 81 +MI L L+ +L+ Sbjct: 83 PDMIKLCRALEADPVELV 100 >gi|300697135|ref|YP_003747796.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073859|emb|CBJ53386.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 126 Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A+ +Q+ + +++IS +E G + +++ + + + L+ L +L Sbjct: 41 VGARIKQCRHAAEKSQERLAFEASVDRTYISSIERGIANPSVETLANICYALNVTLAELF 100 Query: 82 KP 83 P Sbjct: 101 AP 102 >gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 190 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + RKE LT + R G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|322806874|emb|CBZ04444.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 147 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 +F N + IR+ L E+ +G S+IS +E G+ I + LA TL+ + + Sbjct: 1 MFGKNIKRIRELKGLGVNELSRLSGVNASYISAMERGEKENPTITTLKKLADTLEVTVDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] Length = 394 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK +TQ+E+ ++ G + +S E+G S ++ ++ LA L + +LL Sbjct: 6 FAQRLRQYRKNKGMTQQELADQLGVSNKTVSRWESG-SYPDVTTLVALARVLGVTVDELL 64 Query: 82 KP 83 P Sbjct: 65 DP 66 >gi|229494729|ref|ZP_04388487.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121] gi|229318396|gb|EEN84259.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121] Length = 122 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D R + R +R++ T ++ + G ++ ++SE+E GK + + + Sbjct: 18 DPAVAVRKPPLIREAYGRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERGKKEPSSEIL 77 Query: 67 IILAHTLDTPLWKLL 81 + L PL LL Sbjct: 78 RAICEALGMPLEHLL 92 >gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 179 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N+R++ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T Sbjct: 1 MQIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGTTPSD 60 Query: 80 LLK 82 K Sbjct: 61 FFK 63 >gi|15020664|emb|CAC44539.1| restriction endonuclease control protein [Lactococcus lactis subsp. cremoris] Length = 77 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++RK L+Q+++ + ++++SE+E GK I + + + D + K Sbjct: 11 GKTIAHLRKVHNLSQEDLAELSDTHRTYLSEVEGGKRNPTITVLKKMVDSFDISMSSFFK 70 >gi|310830110|ref|YP_003962467.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741844|gb|ADO39504.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 110 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + + R R + KLTQ ++ R +++S LE G ++ +I ++ L+ P+ Sbjct: 2 DNKVIGRHIREARLDKKLTQYQLAERVHITPNYLSMLERGTHLPKLETLITISEALEVPV 61 Query: 78 WKLLK 82 LL Sbjct: 62 SALLT 66 >gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 181 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 187 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + +I + R R A L+ E+ R G A+S +S+LE+G +++ + L Sbjct: 4 DDTATPQAVI-AASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGNPSLETLWALCV 62 Query: 72 TLDTPLWKLLKP 83 LD P +LL P Sbjct: 63 ALDMPFSRLLDP 74 >gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 33/71 (46%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + + + R R++ L+++E G + ++ +LE G+ +++ ++ + Sbjct: 1 MENKVEIDNKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGERQMSLPVLVKIV 60 Query: 71 HTLDTPLWKLL 81 + L L L+ Sbjct: 61 NCLHVSLDYLI 71 >gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 187 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P L + R R E L+ + G + +SE+E G + + Sbjct: 2 DSPDLP-------HLIGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGTRNPTLSTL 54 Query: 67 IILAHTLDTPLWKLL 81 LA+ L PL LL Sbjct: 55 YGLANALGRPLSWLL 69 >gi|182682772|ref|YP_001830970.1| conjugal transfer protein TrbA [Xylella fastidiosa M23] gi|182632882|gb|ACB93657.1| transcriptional regulator, XRE family [Xylella fastidiosa M23] Length = 118 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + E +T+ E+ + G + S++S+L GK+ ++ M +A L PL L Sbjct: 5 IFFTNILRLLDERGMTKYELSEKAGISISFLSDLTNGKANPSLKIMEAIAEALKVPLTIL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 179 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+R KLTQ+E+ RT ++ +IS++E+ ++ +++ + + L T K Sbjct: 4 GKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYASPSMETFLNILEVLGTSPSDFFK 63 >gi|85717711|ref|ZP_01048645.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85695462|gb|EAQ33386.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 71 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R + KLTQ+++ R+G + ++ +E G + ++ + +A L Sbjct: 4 KEVMAINMRRLRYDRKLTQEDLAARSGLSMRYVGSVERGAVSASVSVLGKVAEALGVDPC 63 Query: 79 KLLK 82 L++ Sbjct: 64 DLIR 67 >gi|110800489|ref|YP_695467.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110675136|gb|ABG84123.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 180 Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M + +RK+ KLTQK + TG ++S++S++E + + D + LA +L L Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDL 58 >gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] Length = 141 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +RKE ++Q+++ ++ IS+ E+GK+ +IDN+I+L L +L+ Sbjct: 3 FNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDELI 62 >gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium] gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 122 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + TQ+ + +R G + +S +ETG S++++ ++ +A+ L + + Sbjct: 6 KAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLSVSVDE 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|2340851|emb|CAA74068.1| hypothetical protein [Ralstonia eutropha H16] Length = 105 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK+ +Q+ + +G ++S++S +E+GK + + N+ LA TL P ++ Sbjct: 8 LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEM 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|126740274|ref|ZP_01755963.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718729|gb|EBA15442.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 231 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 9 PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 PH + RE+++ R R++ ++T E+ TG + +S++E G ++ ++ Sbjct: 31 PHSLRSSDREKVLEVAIGREVRAFRRQKEITVAELAQITGLSIGMLSKIENGNTSPSLTT 90 Query: 66 MIILAHTLDTPL 77 + ILA+ L PL Sbjct: 91 LQILANALSVPL 102 >gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630] gi|254975814|ref|ZP_05272286.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255093200|ref|ZP_05322678.1| putative regulatory protein [Clostridium difficile CIP 107932] gi|255101354|ref|ZP_05330331.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307230|ref|ZP_05351401.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314943|ref|ZP_05356526.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517617|ref|ZP_05385293.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650728|ref|ZP_05397630.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|255656203|ref|ZP_05401612.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|260683814|ref|YP_003215099.1| putative regulatory protein [Clostridium difficile CD196] gi|260687474|ref|YP_003218608.1| putative regulatory protein [Clostridium difficile R20291] gi|296450363|ref|ZP_06892120.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878775|ref|ZP_06902776.1| probable regulatory protein [Clostridium difficile NAP07] gi|306520643|ref|ZP_07406990.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251268|emb|CAJ69099.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209977|emb|CBA63985.1| putative regulatory protein [Clostridium difficile CD196] gi|260213491|emb|CBE05194.1| putative regulatory protein [Clostridium difficile R20291] gi|296260773|gb|EFH07611.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430203|gb|EFH16049.1| probable regulatory protein [Clostridium difficile NAP07] Length = 112 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + + R + +Q+ + + G ++I ++E ++ +I+ ++ +A LD PL Sbjct: 6 KIIGDRIKVYRTKLGYSQEFLAEKAGLHPTYIGQIERAETNTSINIIMKIATALDIPLEL 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] Length = 177 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R LTQ+E+ +RT ++ +IS+LE ++ +I ++ + L T + + Sbjct: 1 MQIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 187 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE K TQ E+ GF +S +S++E G + + ++ +A L + LL Sbjct: 3 LGKRIRLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSDLL 62 Query: 82 KP 83 +P Sbjct: 63 EP 64 >gi|54298059|ref|YP_124428.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris] gi|53751844|emb|CAH13268.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris] Length = 86 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R IR +Q+ + ++++ +E G+ I+I N+I +A L+ + +L+ Sbjct: 12 GDQIRTIRSSKGFSQEGLAAAATLGRTYMGRVERGEQNISIQNLIKIAFILNVNVGELVP 71 Query: 83 P 83 P Sbjct: 72 P 72 >gi|225028123|ref|ZP_03717315.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353] gi|224954593|gb|EEG35802.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353] Length = 178 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + LTQ+E+ +R ++ +IS+LE ++ +I + L L T L Sbjct: 3 LGEKIKELRNKQGLTQEELADRAELSKGFISQLERDMTSPSIATLEDLLQCLGTTL 58 >gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] Length = 180 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+R + LTQ+E+ RT ++ +IS++E S +++ + L Sbjct: 4 GNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKDFF 62 >gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 211 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K + S + + R +R+ LT ++ RTG + ++S+LE G + ++ Sbjct: 12 KEADHASSRIVDEQAERVGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTRPSMV 71 Query: 65 NMIILAHTLDTPLWKLL 81 ++ +A L T +L+ Sbjct: 72 SLDRIAKALGTTQVELI 88 >gi|78186555|ref|YP_374598.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166457|gb|ABB23555.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 85 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R+ R L+Q + + G +S+I +E G+ I + N + +A+ L L + Sbjct: 7 MCLGDQIRSERYRKNLSQLSLSQQCGLHRSYIGLIERGEKNITVINCMKVANALGISLSE 66 Query: 80 LL 81 L+ Sbjct: 67 LI 68 >gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134] gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134] gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 181 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|312197651|ref|YP_004017712.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311228987|gb|ADP81842.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 175 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ + R G + +SE+E G + + LA L+ PL LL Sbjct: 9 VGARLRATRQARDLSVGALAARAGVGKGSLSEIENGVRNPTLGTLYALAGALEVPLATLL 68 >gi|84499939|ref|ZP_00998205.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391873|gb|EAQ04141.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 211 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + F R +R+ LT +++ +R G A S IS++E + D ++ LA Sbjct: 7 DKTTAKALTAFGQKVRTLRRGKGLTLQQVADRAGMAGSTISKIENSNLSPTFDGLLKLAR 66 Query: 72 TLDTPLWKLLK 82 LD L LL+ Sbjct: 67 GLDVDLSTLLE 77 >gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC 334] gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23] gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei ATCC 334] gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei BL23] gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei LC2W] gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei BD-II] Length = 179 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++R LTQ+E+ RT + +IS++E +S+ +++ + L + Sbjct: 4 GSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPADFFR 63 >gi|310659824|ref|YP_003937545.1| hypothetical protein CLOST_2525 [Clostridium sticklandii DSM 519] gi|308826602|emb|CBH22640.1| protein of unknown function [Clostridium sticklandii] Length = 102 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M R +R+ +TQ+E+ F+ S+I +LE ++ +I + I+A + Sbjct: 1 MTIGERIRQLRRIKDVTQRELAESVNFSHSYIGDLERNRTNPSIKALEIIAEYFNV 56 >gi|225026228|ref|ZP_03715420.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] gi|224956479|gb|EEG37688.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] Length = 141 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ LTQ+E+ + + +S +E G +D + +A+ LD Sbjct: 41 KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 100 Query: 80 LL 81 LL Sbjct: 101 LL 102 >gi|169828925|ref|YP_001699083.1| putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168993413|gb|ACA40953.1| Putative HTH-type transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 185 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF N + IR+ KL+ +++ +G +++ I ++E G+S+ + + +A+ L Sbjct: 6 QLIFARNLKTIREREKLSLEKVSQLSGVSKAMIGQIERGESSPTLTTIWKIANGLKVSFT 65 Query: 79 KLL 81 +L+ Sbjct: 66 ELI 68 >gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 179 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + LTQ+E+ R+ + +IS++E ++ ++D+++ + L T + Sbjct: 4 GNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSEFF 62 >gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 141 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +RKE ++Q+++ ++ IS+ E+GK+ +IDN+I+L L +L+ Sbjct: 3 FDNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDELI 62 >gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264] gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264] Length = 181 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 214 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 K+D L DA + + R++R ++T E+ +TG + +S++E G + ++ Sbjct: 12 KQDPHALRDAREKNLEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISPSL 71 Query: 64 DNMIILAHTLDTPLWKLL 81 + LAH L PL +L Sbjct: 72 TTISALAHALKVPLVQLF 89 >gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M] gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M] Length = 180 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LT +++ R G +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 >gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5] gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5] Length = 207 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + IRK LTQ+E+ + G +S++E G + D + LA LD +LL Sbjct: 11 LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEILDVTPNELL 70 >gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 183 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R IRKE LT K++ + G ++++I ETG+ + ++ LA L + Sbjct: 1 MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKALHVNVEA 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|194289198|ref|YP_002005105.1| XRE family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223033|emb|CAQ69038.1| putative transcriptional regulator, xenobiotic response element (XRE) family [Cupriavidus taiwanensis LMG 19424] Length = 149 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK+ +Q+ + +G ++S++S +E+GK + + N+ LA TL P ++ Sbjct: 8 LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTAEM 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 205 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E LTQ+++ R +++ +S+ ETG + N+D++ +A D + LL Sbjct: 3 FGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDLL 62 >gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] Length = 205 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E LTQ+++ R +++ +S+ ETG + N+D++ +A D + LL Sbjct: 3 FGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDLL 62 >gi|325110272|ref|YP_004271340.1| hypothetical protein Plabr_3728 [Planctomyces brasiliensis DSM 5305] gi|325110633|ref|YP_004271701.1| hypothetical protein Plabr_4102 [Planctomyces brasiliensis DSM 5305] gi|324970540|gb|ADY61318.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] gi|324970901|gb|ADY61679.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 73 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+E +Q+ ++++ +E G+ + + N+ +A TL L +L+ Sbjct: 11 FGQRVRALRREQGYSQESFAYACELDRTYMGGIERGERNVALRNIERIASTLGISLSELM 70 >gi|149175702|ref|ZP_01854321.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] gi|148845421|gb|EDL59765.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] Length = 73 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RKE +Q+ ++++ +E G+ + + N+ +A TLD L +L+ Sbjct: 11 FGQRVRKLRKEQGYSQENFAYACELDRTYVGGIERGERNLALRNIERIAKTLDISLAELM 70 >gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550] Length = 181 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|119385893|ref|YP_916948.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376488|gb|ABL71252.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 85 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF +N R R+ L+Q+E+ +R +++IS LE +ID + LA L+ Sbjct: 4 REIFAHNLRAARQARGLSQEELAHRADIDRTYISSLERRVYGASIDVVDRLASVLEMEAS 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|220914255|ref|YP_002489564.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861133|gb|ACL41475.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 210 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++ E A + + R+ R A L+ E+ RTG +++ IS +ET ++ ++ Sbjct: 15 QQAEAVADQAAGKLEQVIAAQVRHYRTAAGLSSAELAARTGLSKAMISRVETATTSCSLT 74 Query: 65 NMIILAHTLDTPLWKLLK 82 + LA L P+ L + Sbjct: 75 TLQRLADGLKVPVTALFR 92 >gi|223043812|ref|ZP_03613854.1| DNA-binding protein [Staphylococcus capitis SK14] gi|222442716|gb|EEE48819.1| DNA-binding protein [Staphylococcus capitis SK14] Length = 179 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ TQ+E+ RT ++ +IS++E+ ++ +I+ + + L T + Sbjct: 4 GYKLRNLRRIKNFTQEELAERTDLSKGYISQIESQHASPSIETFLNILEVLGTSASDFFQ 63 >gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G + +I + LA + LL Sbjct: 8 FGAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIASIVTVDKLARAFGVSIECLL 67 Query: 82 K 82 + Sbjct: 68 R 68 >gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 223 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ + R++RK A LTQ+E+ R + +S E GK+ +++ + +A L L Sbjct: 4 RLSIAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTRPDVETLQAIADCLGVDLL 63 Query: 79 KLL 81 ++L Sbjct: 64 QVL 66 >gi|330816861|ref|YP_004360566.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327369254|gb|AEA60610.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 207 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R A +T +++ R+G +++ +S++E G+ + I +A +L T L + Sbjct: 26 EAFGARVRKLRAAAGMTLEQLSERSGVSRAMLSKVERGEKSPTIGIATRIAQSLRTSLTE 85 Query: 80 LL 81 L+ Sbjct: 86 LV 87 >gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W] gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W] gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293] Length = 181 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] Length = 180 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R + LTQ+E+ RT ++ +IS+LE ++ +I+ + + L + + Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L] gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 383 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ I N R IR+ TQ ++ + G ++ +E G +T + + +A + L Sbjct: 2 DQKIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTTPKVSTLQNIASAVGVKL 61 Query: 78 WKLLKP 83 L P Sbjct: 62 QDLFIP 67 >gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis XB6B4] Length = 183 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RM + +R + LTQ+E+ +R+ + +IS+LE +++ +I ++ + L T Sbjct: 4 RMDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPA 63 Query: 79 KLLK 82 + Sbjct: 64 EFFT 67 >gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] Length = 179 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T + + Sbjct: 4 GPKLRELRIAKNLTQEELADRAELSKGFISQLERDLTSPSIATLVDILQCLGTTINEFF 62 >gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 6 AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|170722605|ref|YP_001750293.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760608|gb|ACA73924.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 187 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 +D H A + + + F N R +R ++Q + R+G ++ + +E G+ +++ Sbjct: 3 KDSAH--RASVLQHVSF--NVRALRNAVGMSQSALAERSGVSRRMLVAIEAGEKNVSLTT 58 Query: 66 MIILAHTLDTPLWKLLK 82 + ++A L +L++ Sbjct: 59 LDLIAEALGVAFSRLIQ 75 >gi|120404243|ref|YP_954072.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957061|gb|ABM14066.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 104 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 1 MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP R +++P A R +N R +R LTQ+ + ++G ++ + +E G+ Sbjct: 1 MPTRPSQNDPERVSAWAAHRRTVGDNIRRLRISCGLTQEALALQSGVTRNVLLAVEHGRR 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + + + +A L P +LL Sbjct: 61 GLLYERLFDIADALGVPASRLL 82 >gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length = 180 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LT +++ R G +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 >gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI] gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|209518698|ref|ZP_03267515.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500897|gb|EEA00936.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 200 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ER + R +R+ LT ++ + G ++ +S++E +++ +D + +A Sbjct: 5 DDSKSPLERYL-GATIRELRQSHGLTIAQVAEQAGISRGMLSKIENAQTSAGLDVLHRIA 63 Query: 71 HTLDTPLWKLLK 82 L + L + Sbjct: 64 MALGVSMSALFR 75 >gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 134 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ +Q E+ R+G ++ IS +E+GK + M LA L P+ +L K Sbjct: 2 GPKLRQLRRQMGWSQHELARRSGVDRATISAIESGKRDPSGSTMRKLADALGVPVAELYK 61 >gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str. Zhang] gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei str. Zhang] Length = 179 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++R LTQ+E+ RT + +IS++E +S+ +++ + L + Sbjct: 4 GSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGQSPADFFR 63 >gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RK L+ KE+ N S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820] gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820] gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187] gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1] gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187] gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1] gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|284044649|ref|YP_003394989.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948870|gb|ADB51614.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 80 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 39/72 (54%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +++ + RER R +R L Q+E+ G +++++ LE+G++ + D ++ +A Sbjct: 1 MAEPLHRERRALAIAVRELRARRALKQEEVGEAAGLGRNYLTTLESGRTNPSFDALVRIA 60 Query: 71 HTLDTPLWKLLK 82 L PL +L + Sbjct: 61 SGLGVPLSELTR 72 >gi|220903711|ref|YP_002479023.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868010|gb|ACL48345.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 215 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF R +R EA L+Q+++ + G +S IS LE K+ ++ ++++++ L +L Sbjct: 140 IFGPLLRTLRVEAGLSQEQLAAQCGMDRSAISLLERQKNQPSLASLVLISEALGMTAAEL 199 Query: 81 L 81 + Sbjct: 200 I 200 >gi|126700770|ref|YP_001089667.1| putative phage transcriptional regulator [Clostridium difficile 630] gi|115252207|emb|CAJ70046.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 66 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 N + R + L Q+E+ +R G ++ ++S LETGK + + D MI L+ LDT + +L Sbjct: 2 GINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61 >gi|297538615|ref|YP_003674384.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297257962|gb|ADI29807.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 212 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 D R + R +R E LT ++ R G ++ +S++E + +++ Sbjct: 8 EDVKVDERNKSLGRHL-GTTIRQLRLEHNLTIADVSERAGISRGMLSKIENSLAATSLET 66 Query: 66 MIILAHTLDTPLWKLLK 82 + LA+ L L KL + Sbjct: 67 LEQLANALGVTLSKLFQ 83 >gi|295136488|ref|YP_003587164.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294984503|gb|ADF54968.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 97 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 7/78 (8%) Query: 11 LSDAILRERMIFVNNFRNIRKE-------AKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++ E+ + +RK+ ++Q+E+ RTG A+ I E+E G + Sbjct: 16 SDKKLITEKKALGSRIAELRKKVIDPSTNKPISQEELGLRTGNAKKTIGEIERGNTNPTF 75 Query: 64 DNMIILAHTLDTPLWKLL 81 + + +A L P+ +L Sbjct: 76 ETLFKIARELKVPIIELF 93 >gi|126175739|ref|YP_001051888.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125998944|gb|ABN63019.1| putative transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 81 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +RK L+Q E+ R +S+I +E ++ I +D + +A LD +LL Sbjct: 8 FGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEANITLDMLYKIAEVLDCEPHELL 67 >gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241] gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|313499651|gb|ADR61017.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 187 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 +D H + + N R++R A L+Q + R+G ++ + +E G+ +++ Sbjct: 3 KDSSHRASVLQH----VSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTT 58 Query: 66 MIILAHTLDTPLWKLLK 82 + ++A L L++ Sbjct: 59 LDLIAEALGVAFSTLIQ 75 >gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 189 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R + LTQ+E+ RT ++ +IS+LE S+ +ID + L + Sbjct: 13 GKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSIDTFFNILEVLGCTPKEFF 71 >gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N R +R+E KL+ E+ +G ++S ++++E G+ I + L++ + P Sbjct: 6 LIVAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKVPFDA 65 Query: 80 L-LKP 83 L ++P Sbjct: 66 LTVRP 70 >gi|254385813|ref|ZP_05001133.1| transcriptional regulatory protein [Streptomyces sp. Mg1] gi|194344678|gb|EDX25644.1| transcriptional regulatory protein [Streptomyces sp. Mg1] Length = 192 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N ++ R LT + R G ++ + ++E ++ +++ M+ LA L + Sbjct: 8 QSLARNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTNPSLETMVKLADALGVDMTA 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|42527946|ref|NP_973044.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41818991|gb|AAS12963.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|325474830|gb|EGC78016.1| DNA-binding protein [Treponema denticola F0402] Length = 101 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF++N R IRKE +TQ+++ ++I ++ET K +I+ + +A L Sbjct: 4 QEIFISNLRRIRKEKHITQEKLAELCNTDTAYIGQIETHKRFPSINFIEKIASALQIEAT 63 Query: 79 KLLK 82 +L K Sbjct: 64 ELFK 67 >gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1] Length = 119 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +ER++ + RKE ++Q E+ R + ++S++E GKS + +I ++ L Sbjct: 5 KERLVPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64 Query: 76 PLWKLLKP 83 KLL+P Sbjct: 65 STDKLLRP 72 >gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 6 AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf] gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf] gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 6 AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|1171067|sp|P43640|MUNC_MYCSP RecName: Full=Regulatory protein munI gi|431929|emb|CAA53787.1| MunI regulatory protein [Mycoplasma sp.] Length = 74 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ F N + +RKE L+Q+ + +++ S +E GK +++ N+ ++ L L Sbjct: 5 KIRFGNKLKKLRKEKTDLSQESFAAQIDLDRTYYSSIENGKRNVSLVNLEKISAGLGITL 64 Query: 78 WKLL 81 +L Sbjct: 65 SELF 68 >gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 35/66 (53%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + + +RK K+TQ+++ + G ++S +E G+S+ +++ + ++ LD Sbjct: 3 TTKELLGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRSSPSLEALENISQALDVE 62 Query: 77 LWKLLK 82 + L + Sbjct: 63 IKDLFE 68 >gi|119896658|ref|YP_931871.1| SgrAlc control protein [Azoarcus sp. BH72] gi|119669071|emb|CAL92984.1| SgrAlc control protein [Azoarcus sp. BH72] Length = 77 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+ +Q+ + R +S++ E+E G ++ + LA LD PL LL Sbjct: 10 FGAAVRQFRERHGWSQELLAERADLNRSYLGEVERGTVVPSLATAVKLAAALDIPLSNLL 69 >gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 96 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + L L T K Sbjct: 4 GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63 >gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] Length = 136 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R+ TQ+E+ R + S+IS++E GK I + +A L L Sbjct: 14 MLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKENPTITVLERIAKALAIDPCML 73 Query: 81 L 81 L Sbjct: 74 L 74 >gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862] Length = 137 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N+RK+ L+Q+++ ++ + +S+ ETG+S+ +++ M +A LD + L Sbjct: 4 VFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSVQVL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|268317796|ref|YP_003291515.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM 4252] gi|262335330|gb|ACY49127.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM 4252] Length = 505 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + +R++ LT +++ +R G + S++SE+E GK D +I LA Sbjct: 9 RFVLGLKLKALRQQRGLTLQDVASRAGLSVSYLSEIEKGKKFPKPDKLIDLASVFSVSYE 68 Query: 79 KLLKP 83 +L+ P Sbjct: 69 ELISP 73 >gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|169825512|ref|YP_001695687.1| hypothetical protein Bsph_p098 [Lysinibacillus sphaericus C3-41] gi|168994789|gb|ACA42328.1| conserved hypothetical protein with Helix-turn-helix motif [Lysinibacillus sphaericus C3-41] Length = 75 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK+A L+Q+++ + +++I LE + +I + + L+ + + Sbjct: 8 FGKVLKIYRKDAGLSQEQLALQCDLDRTYIGLLERAERQPSITTIFKICTALNVKPHEFI 67 Query: 82 K 82 K Sbjct: 68 K 68 >gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 180 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+R + LTQ+E+ RT ++ +IS++E S +++ + L Sbjct: 4 GNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKDFF 62 >gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+RD P L N R +R++ LT E+ R G +++ +S++E +++ ++ Sbjct: 16 RERD-PQAPVEELEFEAAIGRNVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSL 74 Query: 64 DNMIILAHTLDTPLWKLLK 82 + +LA LD P+ L + Sbjct: 75 STLALLAKGLDVPVTSLFR 93 >gi|27375166|ref|NP_766695.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348302|dbj|BAC45320.1| bsr0055 [Bradyrhizobium japonicum USDA 110] Length = 83 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R IR K+TQ+E+ + G + ++ +E + ++ + +A L Sbjct: 10 KEVMAVNLRRIRHVKKMTQEELADGAGLSVRYVGAIERADVSASVTVLGRIAEALGVEAT 69 Query: 79 KLLK 82 L+K Sbjct: 70 DLVK 73 >gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 186 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R +RKE LT ++ + TG + + +S++E G + + + LAH LD P Sbjct: 4 VGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIP 58 >gi|113971535|ref|YP_735328.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113886219|gb|ABI40271.1| transcriptional regulator, XRE family [Shewanella sp. MR-4] Length = 78 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R EA L+Q+++ ++G +++IS +E I +D++ L L + ++ Sbjct: 11 LRQLRNEAGLSQEQLARQSGIDRTYISGVERSIRNITLDSLEGLIGALGVTSEEFIR 67 >gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 209 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + R R R +R+E LT E+ R A S +S++E G+ + D ++ Sbjct: 7 PLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILS 66 Query: 69 LAHTLDTPLWKLL 81 LA L + +L Sbjct: 67 LAEGLGADVAELF 79 >gi|28211495|ref|NP_782439.1| putative transcriptional regulator sinR [Clostridium tetani E88] gi|28203936|gb|AAO36376.1| putative transcriptional regulator sinR [Clostridium tetani E88] Length = 171 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 +F N + IR++ L E+ +G S+IS LE G K I + LA+ L+ + Sbjct: 27 KMFDANIKRIREQKGLGVNELSRISGVNASYISALERGEKQNPTITILKKLANALEVTID 86 Query: 79 KLLK 82 +L+K Sbjct: 87 ELMK 90 >gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 211 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 183 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 34/54 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R + +LT K++ ++GF+ S++S++E G S++ I ++ +A L P+ Sbjct: 6 KKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPI 59 >gi|160899644|ref|YP_001565226.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160365228|gb|ABX36841.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 106 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 2 PRRKRDEP-HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P R P + S+ L F R R + Q + + G ++S + ++E G+ Sbjct: 13 PGRPPGTPTYESEPALA----FGRAVRAARVAQGVAQDDFAFQAGISRSHMGKIERGEHV 68 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + ++ +A L +L+ Sbjct: 69 PTLPLILKIATALGISASELM 89 >gi|27733909|ref|NP_775700.1| putative regulatory protein [Leuconostoc citreum] gi|27552373|emb|CAD38159.1| putative regulatory protein [Leuconostoc citreum] Length = 68 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R++ ++Q++ G +S+ + +E+GK I+I N+ + L L + K Sbjct: 7 AHRIRQLRQQQNVSQEKFAYNIGMDRSYFASVESGKRNISIINLQKIVTGLGVTLEEFFK 66 >gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 181 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 6 AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae ATCC 10712] Length = 189 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R+ RK+ ++ + R+G +Q ++S+LE G +T ++ ++ +A LD Sbjct: 8 PEAIEVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALDVT 67 Query: 77 LWKLLKP 83 L+P Sbjct: 68 PGTFLRP 74 >gi|317480761|ref|ZP_07939847.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|316903102|gb|EFV24970.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 161 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + IL+ER + +RK+ +TQ+E+ N G + I+++E G ++ID + + Sbjct: 10 EKILKERERIGSRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSIDILSKVTSA 69 Query: 73 LD 74 L Sbjct: 70 LG 71 >gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 120 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R++A L+Q+++ ++ + +S+ E G++T ++D +I LA L L +L+ Sbjct: 5 FNTQLSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETTPDLDTLISLATVLGVSLDELV 64 >gi|113867108|ref|YP_725597.1| hypothetical protein H16_A1088 [Ralstonia eutropha H16] gi|113525884|emb|CAJ92229.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 146 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK+ +Q+ + +G ++S++S +E+GK + + N+ LA TL P ++ Sbjct: 8 LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEM 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|332982997|ref|YP_004464438.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700675|gb|AEE97616.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 71 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R K+ Q E+ G + S++S++E G++ ++ + LA LD + Sbjct: 1 MLGTKIKKLRINKKIKQIELAKAAGISNSFLSDIENGRTMPSLKTLYKLADALDVSITVF 60 Query: 81 LK 82 L+ Sbjct: 61 LE 62 >gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45] gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45] Length = 212 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK ++T E+ +TG + +S++E G + +++ + LA+ L PL +L Sbjct: 29 GRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPLVQLF 87 >gi|238925877|ref|YP_002939395.1| hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] gi|238877554|gb|ACR77261.1| Hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] Length = 105 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R+ LTQ+E+ + + +S +E G +D + +A+ LD Sbjct: 4 KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|225621497|ref|YP_002722756.1| MerR family transcriptional regulator [Brachyspira hyodysenteriae WA1] gi|225216318|gb|ACN85052.1| transcriptional regulator, MerR family [Brachyspira hyodysenteriae WA1] Length = 124 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK K+T E+ ++ + ++ +E G I+I N+ + L+T LL Sbjct: 15 LGQNIRELRKNKKMTIDELAEKSSLSGKYLQGVEVGNRNISIKNLNKICKALETSPDTLL 74 >gi|299133034|ref|ZP_07026229.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593171|gb|EFI53371.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 84 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R +TQ+E+ R G + ++ +E + ++ + +A LD Sbjct: 4 KEVMAVNLRRLRHAKGMTQEELAERAGLSARYVGGIERADVSASVTVLGRIAEALDVEAT 63 Query: 79 KLLK 82 +L++ Sbjct: 64 ELVR 67 >gi|290954828|ref|YP_003486010.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260644354|emb|CBG67439.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 204 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R++ L+ + G A+ +S LE G +D + +A L P+ +L Sbjct: 8 VVARNVRLLREQRGLSLARLAREAGLAKQTLSNLEQGTGNPTVDTLFSIATALGVPVTRL 67 Query: 81 L 81 + Sbjct: 68 V 68 >gi|156977428|ref|YP_001448334.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116] gi|156529022|gb|ABU74107.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116] Length = 68 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F NN R +RK ++Q ++ +S+I +E G+ I ++ LA L + Sbjct: 6 KAFGNNLRLMRKSKSISQDKLALLADIDRSYIGRIERGEVNITLEKAYQLARVLGCDVID 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 117 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + LTQ+++ R + ++I ++E G+ +++++ ++ LA+ L + Sbjct: 4 EALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGERSLSLETLVKLANQLGVTVDY 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 179 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+RK LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T K Sbjct: 4 GYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASDFFK 63 >gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] Length = 181 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ LT KE+ TG + S++S++E G S++ I ++ +A L+ P+ + Sbjct: 6 AEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEFF 64 >gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 179 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+RK LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T K Sbjct: 4 GYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASDFFK 63 >gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 399 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + RK+ L+Q+ + + G ++ + + E + ++DN+ LA LD + Sbjct: 1 MTLGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTALPSLDNLQALAAALDVSVDG 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|167647773|ref|YP_001685436.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350203|gb|ABZ72938.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 78 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R ++TQ+E+ + G + +I +E + ++ + +A L Sbjct: 4 KEVMAINLRRLRHAKQMTQEELADHAGLSARYIGAIERADKSASVTVLGKIAEALGVDPA 63 Query: 79 KLL 81 L+ Sbjct: 64 DLI 66 >gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 219 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+RD D E I N R +R++ LT E+ R G +++ +S++E +++ ++ Sbjct: 19 RERDPQEPVDDTEFEAAI-GRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSL 77 Query: 64 DNMIILAHTLDTPLWKLLK 82 + +LA D P+ L + Sbjct: 78 STLALLAKGFDVPVTTLFR 96 >gi|294827617|ref|NP_710496.2| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|293385461|gb|AAN47514.2| transcriptional regulator with HTH domain [Leptospira interrogans serovar Lai str. 56601] Length = 114 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 E F N R EA LTQ ++ G QS+IS++E+G+ + +++ + L Sbjct: 41 KISEEEWESFFNRLTTARIEANLTQAQVAKSLGKYQSYISKIESGEKKLFMEDFVRLYKL 100 Query: 73 LDTPL 77 + Sbjct: 101 YNKSP 105 >gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41] gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 180 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R + LTQ+E+ RT ++ +IS+LE ++ +I+ + + L + + Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|153954630|ref|YP_001395395.1| hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555] gi|146347488|gb|EDK34024.1| Hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555] Length = 71 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79 + +N + IR+ +T+ + ++G +QS+I E+E+GK + +ID ++ LA L+ + + Sbjct: 1 MLSDNLKKIREIKGITKYRLSKKSGISQSYICEIESGKYTNPSIDIVLKLAEALEISISE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426] gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 180 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 36/59 (61%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+IRK+ LT KE+ +TG + S++S++E G +++ I ++ +A L+ P+ + Sbjct: 6 RKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPITDFFE 64 >gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 180 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|126652113|ref|ZP_01724295.1| DNA-binding protein [Bacillus sp. B14905] gi|126591021|gb|EAZ85132.1| DNA-binding protein [Bacillus sp. B14905] Length = 184 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF N + IR+ KL+ +++ +G +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLIFARNLKAIREREKLSLEKVSQLSGVSKAMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 +L+ Sbjct: 65 ELI 67 >gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 177 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T + + Sbjct: 4 GAKLKELRILKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTSIGEFF 62 >gi|284036935|ref|YP_003386865.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816228|gb|ADB38066.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 500 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F R +R + L+ E+ + + S+++E+E G+ D + LA+ + Sbjct: 9 RLLFGLKLRQLRLDKGLSVSELAQKASLSVSYVTEIEKGRKYPKADKISALANAMQVDYD 68 Query: 79 KLL 81 L+ Sbjct: 69 TLV 71 >gi|85712371|ref|ZP_01043421.1| Transcriptional Regulator, XRE family protein [Idiomarina baltica OS145] gi|85693814|gb|EAQ31762.1| Transcriptional Regulator, XRE family protein [Idiomarina baltica OS145] Length = 75 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + R E L+Q+++ N G A+S+IS++E G + ++ ++ +A TL Sbjct: 4 KAAFGKAVKLRRVEIDLSQEDMANSAGMARSFISKVERGDANPSVTSVKKIADTLGVLPS 63 Query: 79 KL 80 L Sbjct: 64 DL 65 >gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] Length = 194 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ L L T + + Sbjct: 19 GKKLKELRIAKDLTQEELADRAELSKGFISQLERDLTSPSIATLVDLLQVLGTTINEFF 77 >gi|15964249|ref|NP_384602.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073425|emb|CAC41933.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 89 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R I N R +R E L+Q+ + ++++ +E G + I + LA L+ P+ Sbjct: 3 ARQIMGWNLRLLRVERGLSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPV 62 Query: 78 WKLL 81 L Sbjct: 63 AALF 66 >gi|325663237|ref|ZP_08151687.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470691|gb|EGC73921.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] Length = 120 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R + +TQ+ + + + +S +ETGK+ +++ +I +A+ L Sbjct: 2 EVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSV 61 Query: 76 PLWKLL 81 + LL Sbjct: 62 SVDTLL 67 >gi|320333173|ref|YP_004169884.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754462|gb|ADV66219.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 129 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E L K++ G + ++S+LE G++ ++D + LA + LL+ Sbjct: 5 ERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLDTLQTLAGAYTITVHDLLE 63 >gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] Length = 161 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S + N + +R+ L+ E+ ++G +++ +S+LE+G S ID + +A Sbjct: 3 SQPPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAI 62 Query: 72 TLDTPLWKLL 81 L PL L Sbjct: 63 ALGFPLGDLF 72 >gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] Length = 181 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ +A L+ P+ K Sbjct: 6 AEKIRNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RNIR + +TQ+E+ TG QS IS E G I + ++ L+ P+ KLL Sbjct: 6 VGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLL 65 Query: 82 K 82 + Sbjct: 66 E 66 >gi|218133855|ref|ZP_03462659.1| hypothetical protein BACPEC_01744 [Bacteroides pectinophilus ATCC 43243] gi|319936993|ref|ZP_08011403.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|217991230|gb|EEC57236.1| hypothetical protein BACPEC_01744 [Bacteroides pectinophilus ATCC 43243] gi|319807929|gb|EFW04508.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 111 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R R KL Q+++ +T ++I +E G+ +++ I + + L Sbjct: 7 GKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVS 60 >gi|163858549|ref|YP_001632847.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163262277|emb|CAP44580.1| predicted transcriptional regulator [Bordetella petrii] Length = 101 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 2 PRRKRDEP-HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P R P + S+ L F R R + Q + + G ++S + ++E G+ Sbjct: 8 PGRPPGTPTYESEPALA----FGRAVRAARVAQGVAQDDFAFQAGISRSHMGKIERGEHV 63 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + ++ +A L +L+ Sbjct: 64 PTLPLILKIATALGISASELM 84 >gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R N R +RK KL+Q+++ +S+++++E GK +++ + ++ L Sbjct: 2 SQETRTFVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIEGGKRNPSLECIEKISKGLG 61 Query: 75 TPLWKLLK 82 L + K Sbjct: 62 LSLEEFFK 69 >gi|27375149|ref|NP_766678.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27348285|dbj|BAC45303.1| bsr0038 [Bradyrhizobium japonicum USDA 110] Length = 93 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R IR ++Q+++ + G +S++S LE ID + +A TLD L Sbjct: 4 RAIVAWNVRRIRVNRGISQEQLAWKAGIDRSYMSSLERQSKNPTIDLLDRIAETLDVQLS 63 Query: 79 KLL 81 + Sbjct: 64 EFF 66 >gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268] Length = 213 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R E K TQ+++ G ++ IS E GKS +I ++I ++ L LLK Sbjct: 6 GSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKSYPDIISVIKMSECYGVSLDYLLK 65 >gi|225388243|ref|ZP_03757967.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] gi|225045711|gb|EEG55957.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] Length = 116 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +A LTQ+ + + + + +S +ETG S +++ ++ LA+ L + + L Sbjct: 9 GKRIKIARIKADLTQEALAEKASLSTTHMSNIETGNSKLSLPTIVSLANALSVSVDEFL 67 >gi|148548716|ref|YP_001268818.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512774|gb|ABQ79634.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 187 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 +D H + + N R++R A L+Q + R+G ++ + +E G+ +++ Sbjct: 3 KDSSHRASVLQH----VSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTT 58 Query: 66 MIILAHTLDTPLWKLLK 82 + ++A L L++ Sbjct: 59 LDLIAEALGVAFSTLIQ 75 >gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 114 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R IR LTQ+++ + +I LE G+ +ID + + L+ + Sbjct: 5 RKQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGERNFSIDTLEKVLTALNVSIS 64 Query: 79 KLL 81 +L+ Sbjct: 65 ELM 67 >gi|116691614|ref|YP_837147.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736384|ref|YP_001777644.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562401|ref|YP_002233164.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|116649614|gb|ABK10254.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169818572|gb|ACA93154.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] gi|198038441|emb|CAR54399.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 73 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G++ +I +A D + LL Sbjct: 8 FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67 >gi|255601036|ref|XP_002537591.1| conserved hypothetical protein [Ricinus communis] gi|223515814|gb|EEF24793.1| conserved hypothetical protein [Ricinus communis] Length = 109 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A+ +Q+ + G + +IS +E G + +++ + + ++L L +L Sbjct: 20 LGKRLKECRHAAEKSQETLAFEAGVDRVYISSIERGLANPSVETLATICYSLGVTLGELF 79 Query: 82 KP 83 P Sbjct: 80 TP 81 >gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 209 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 9 PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 PH + RE+++ R RK+ +T E+ TG + +S++E G ++ ++ Sbjct: 9 PHSVRSGDREKVLEVAIGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENGNTSPSLTT 68 Query: 66 MIILAHTLDTPLWKLLK 82 + LA L PL + Sbjct: 69 LQSLADALSVPLTSFFR 85 >gi|150388588|ref|YP_001318637.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948450|gb|ABR46978.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 122 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R R LT +E+ + S++ +E G+ ++I+ + L+ TL+ Sbjct: 6 KLIGNKIRKERILLDLTLEELAEILDLSPSYMGLIERGQRGVSIETLYKLSTTLNVTTDY 65 Query: 80 LLKP 83 LL P Sbjct: 66 LLSP 69 >gi|209544911|ref|YP_002277140.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532588|gb|ACI52525.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 76 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R++ L+Q+E+ ++ ++++S LE ++ID + +A L Sbjct: 4 REVLARNLRIYRQQRGLSQEELAHKAEIDRTYVSALERCVYGVSIDVLDRIAVALSVEAT 63 Query: 79 KLLK 82 LL+ Sbjct: 64 DLLQ 67 >gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 181 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT K++ N S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 188 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R R+ A L+ E+ R G A+S +S+LE+G +++ + LA Sbjct: 5 RPTAPLLAQIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWALAVA 64 Query: 73 LDTPLWKLLKP 83 L P +L+ P Sbjct: 65 LGVPFSRLVDP 75 >gi|299535208|ref|ZP_07048532.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298729329|gb|EFI69880.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 129 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R IR L+Q+E+ RTG F++ +S +E G+S I + + + LD Sbjct: 6 KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETIMKALDIT 65 Query: 77 LWKLL 81 +L Sbjct: 66 PEELF 70 >gi|298490745|ref|YP_003720922.1| XRE family transcriptional regulator ['Nostoc azollae' 0708] gi|298232663|gb|ADI63799.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708] Length = 66 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 22/38 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 F N R +RK L+Q+++ G +++I +E G++ Sbjct: 10 FGKNVRKVRKAKGLSQEQLAELAGLYRNYIGGVERGEN 47 >gi|170692929|ref|ZP_02884090.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141927|gb|EDT10094.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 217 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 ++ + H + L + + + R RK LT E+ R+G A S IS+ E G + Sbjct: 9 KQPKAHAHEAPPSL-DHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALT 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 D LAH+L+ + Sbjct: 68 YDKFAALAHSLELEFDAIF 86 >gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] Length = 179 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R LTQ+E+ +R+ ++ +IS+LE ++ +I ++ + L T + + + Sbjct: 4 GKKIKELRVAKGLTQEELADRSELSKGFISQLERDLTSPSIATLMDILQCLGTTVSEFFQ 63 >gi|159028411|emb|CAO89853.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 81 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ L+Q+ + R +++IS +E G I +D++ + LD + + Sbjct: 9 VAVTVRKLRKKRNLSQEALGYRANLDRTYISGVERGVRNITLDSLEQIISALDMDIVTFV 68 >gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 180 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|299133035|ref|ZP_07026230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593172|gb|EFI53372.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 70 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R +R ++Q+E+ +R G ++++ LE + + +D + LA L+ Sbjct: 4 REIVATNLRRLRHAKSMSQEELADRAGTNRNYVGMLEREQHSATVDMLEKLAEVLEADPV 63 Query: 79 KLLK 82 + + Sbjct: 64 EFFR 67 >gi|228997018|ref|ZP_04156650.1| Transcriptional regulator, XRE [Bacillus mycoides Rock3-17] gi|228762759|gb|EEM11674.1| Transcriptional regulator, XRE [Bacillus mycoides Rock3-17] Length = 77 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF + R + ++Q+E+ + +++I LE GK I + LA L+ P + Sbjct: 5 QIFGAILQTHRLNSNMSQEELAFNSELDRTYIILLERGKRKPTIITLFSLATALNVPPSQ 64 Query: 80 LLK 82 L+K Sbjct: 65 LIK 67 >gi|254976734|ref|ZP_05273206.1| putative phage transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094118|ref|ZP_05323596.1| putative phage transcriptional regulator [Clostridium difficile CIP 107932] gi|255315869|ref|ZP_05357452.1| putative phage transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518530|ref|ZP_05386206.1| putative phage transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651649|ref|ZP_05398551.1| putative phage transcriptional regulator [Clostridium difficile QCD-37x79] gi|260684686|ref|YP_003215971.1| putative phage transcriptional regulator [Clostridium difficile CD196] gi|260688344|ref|YP_003219478.1| putative phage transcriptional regulator [Clostridium difficile R20291] gi|306521450|ref|ZP_07407797.1| putative phage transcriptional regulator [Clostridium difficile QCD-32g58] gi|260210849|emb|CBA65944.1| putative phage transcriptional regulator [Clostridium difficile CD196] gi|260214361|emb|CBE06742.1| putative phage transcriptional regulator [Clostridium difficile R20291] Length = 66 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 N + R + L Q+E+ +R G ++ ++S LETGK + + D MI L+ LDT + +L Sbjct: 2 GINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61 >gi|239817497|ref|YP_002946407.1| helix-turn-helix domain protein [Variovorax paradoxus S110] gi|239804074|gb|ACS21141.1| helix-turn-helix domain protein [Variovorax paradoxus S110] Length = 80 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 R+ A R + N R +Q+ + G +++++ +E I++D Sbjct: 4 PRNSSKQPQAS--AREVLALNLIRQRGAKGWSQEALAFEAGLHRTFVAHVERQARNISLD 61 Query: 65 NMIILAHTLDTPLWKLLK 82 N+ LA L+ ++LL+ Sbjct: 62 NLERLALALNLRPYQLLE 79 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +RK A +TQ+++ G Q +S +E GKS ++D ++ +A ++ P Sbjct: 3 TANELLGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAP 62 Query: 77 LWKLLK 82 L L + Sbjct: 63 LPNLFE 68 >gi|78059660|ref|YP_366235.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77964210|gb|ABB05591.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 113 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R +R L+Q+++ +++IS++E + +++DN+ +A L + Sbjct: 35 RDVLAFNVRVVRVRNMLSQEQLGFAADLDRTFISQVERARINVSLDNIERIARALGVAAY 94 Query: 79 KLLK 82 LL+ Sbjct: 95 ILLQ 98 >gi|317472207|ref|ZP_07931536.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|331088310|ref|ZP_08337229.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] gi|316900296|gb|EFV22281.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|330408554|gb|EGG88020.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] Length = 120 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R + +TQ+ + + + +S +ETGK+ +++ +I +A+ L Sbjct: 2 EVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSV 61 Query: 76 PLWKLL 81 + LL Sbjct: 62 SVDTLL 67 >gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] Length = 87 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 15 ILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L+E +F NN + RKE K++Q+E+ +R + +S +E GK I+ I +A L Sbjct: 12 SLKEAFLFMNNNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKAL 71 Query: 74 DTPLWKLL 81 D L KL Sbjct: 72 DVDLNKLF 79 >gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 68 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDT 75 MI R +RK L+Q+E G +QS+ISELE G K+ ++ + ++ L Sbjct: 1 MIPGRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKTNPSLSVIKKISKALKV 57 >gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 135 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R+ L+Q+ + + ++ IS+ E G +T +++N++ LA L +L+ Sbjct: 4 FSSQLKILRQAKNLSQEALAEQLFISRQAISKWENGDATPDLENLVKLAEIFKVSLDELV 63 >gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 205 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E LTQ+++ + +++ +S+ ETG + N+D++ ++A D + LL Sbjct: 3 FGEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGGGSPNLDSLQVVARLFDVSVDDLL 62 >gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 179 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E +LTQ+E+ NR ++ +IS++E ++ +I +I + L T L + Sbjct: 4 GEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLTEFF 62 >gi|167582978|ref|ZP_02375852.1| possible transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 115 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R I + R EA +Q+ + +++IS +E G + + Sbjct: 10 KRPTSSAARPAPISIA---LGKRIKQCRHEADKSQETLAFEAHVDRTYISAIERGIANPS 66 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 ++ + + ++L+ L +L P Sbjct: 67 VETLANICYSLNVTLAELFAP 87 >gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 185 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M + +R E LTQ ++ +R ++ +IS++E ++ +I ++ + L T L Sbjct: 5 ELMNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLTSPSIATLVDILECLGTNL 64 Query: 78 WKLL 81 Sbjct: 65 KDFF 68 >gi|77459530|ref|YP_349037.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383533|gb|ABA75046.1| putative XRE-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 187 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R A ++Q + ++G ++ + +E G+ +++ + +A L+ L+ Sbjct: 15 VSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALEVAFSDLI 74 Query: 82 K 82 + Sbjct: 75 Q 75 >gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 180 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK+ LT K + + G ++IS++ETGK+ +I + +A +LD + LL Sbjct: 4 AEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRDLL 62 >gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 175 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +N + IRKE K+TQ E+ + +QS++S+LE + + I + +A L+ + L Sbjct: 4 GDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAYL 61 >gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] Length = 185 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ L+ E+ +G +++ +S+LE+G S ID + +A L PL L Sbjct: 10 GQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAALRFPLSDLFT 69 >gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 179 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 36/59 (61%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++RK+ LT KE+ +TG + S++S++E G +++ I ++ +A L+ P+ + Sbjct: 6 KKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPITDFFE 64 >gi|255036397|ref|YP_003087018.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254949153|gb|ACT93853.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 496 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++F + +R + ++ E+ ++G + S+I+E+E GK D ++ LA ++ Sbjct: 9 RLVFGLKLKQLRLDKGMSLSELSQKSGLSISYINEIEKGKKYPKSDKILALASAIEVDYD 68 Query: 79 KLL 81 L+ Sbjct: 69 TLV 71 >gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 148 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + L+Q +I RTG + ++S +E G + ++D + +A LD PL + Sbjct: 37 GMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDLPLAQFF 95 >gi|312881391|ref|ZP_07741188.1| transcriptional regulator, Cro/CI family protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309371031|gb|EFP98486.1| transcriptional regulator, Cro/CI family protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 176 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N ++IR L+ ++ + G A+S +S +E G +D + LA LD P Sbjct: 8 ILGRNLQSIRVSKGLSLSQLAHDAGIAKSNLSRIEQGSGNPTLDTLWRLAIQLDVP 63 >gi|104782559|ref|YP_609057.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95111546|emb|CAK16266.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 177 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R +A L+Q + R+G ++ + +E G+ +++ + ++A L L+ Sbjct: 5 VSQNVRRLRSDAGLSQAALSERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLI 64 Query: 82 K 82 + Sbjct: 65 Q 65 >gi|307132763|ref|YP_003884779.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937] gi|306530292|gb|ADN00223.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937] Length = 156 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L+ A + R + RK LTQK++ +TG ++ +SE+E G+ T ++D Sbjct: 67 LAAASMASRESMGKTIASTRKACGLTQKQVAEQTGINKTTLSEIENGRFTGSLDIFERYL 126 Query: 71 HTLDTPL 77 + L Sbjct: 127 DAVGLQL 133 >gi|284041578|ref|YP_003391918.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945799|gb|ADB48543.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 93 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 33/68 (48%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + E ++ R +R L+Q+++ +G ++++ +E G+ ++ L L Sbjct: 10 PVSAEHVVLGRAVRELRARRDLSQEQLGFHSGLHRNYVGAIERGEINPTFKTLLSLVRGL 69 Query: 74 DTPLWKLL 81 D PL +L+ Sbjct: 70 DLPLSELV 77 >gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|154504923|ref|ZP_02041661.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] gi|153794806|gb|EDN77226.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R + +TQ+ + + + +S +ETGK+ +++ +I +A+ L Sbjct: 2 EVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSV 61 Query: 76 PLWKLL 81 + LL Sbjct: 62 SVDTLL 67 >gi|148257956|ref|YP_001242541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410129|gb|ABQ38635.1| Putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 58 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +TQ+++ +GF+Q +IS LE G+ + + L+ LD +LLKP Sbjct: 1 MTQEQLAEISGFSQQYISGLEKGQRNPTVVTIYELSVALDVDYLELLKP 49 >gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 181 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] Length = 177 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R TQ+E+ +R ++S+IS+LE + + +ID + + L + L Sbjct: 3 LGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDL 58 >gi|184200390|ref|YP_001854597.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201] gi|183580620|dbj|BAG29091.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201] Length = 71 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ R +R LTQ+ + R G + + +E G+ + +D++ LA L Sbjct: 6 RITLGTQVRKVRLSRGLTQEVLAERLGVTPRYFAGIERGERNLTLDSVDALAEQLGVEAQ 65 Query: 79 KLL 81 LL Sbjct: 66 SLL 68 >gi|317131575|ref|YP_004090889.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469554|gb|ADU26158.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 183 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + IRK KL+ + TG ++S + ++E G++ I + + L L+ P Sbjct: 11 NLKKIRKAKKLSLDALATETGISKSMLGQIERGEANPTIATLGKIVSGLRVEFMDLVGP 69 >gi|150377153|ref|YP_001313749.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150377520|ref|YP_001314115.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031700|gb|ABR63816.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] gi|150032067|gb|ABR64182.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 72 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R + +L+Q+E+ R +++I LE + I+ + LA LD + Sbjct: 4 RETVARNLRIARNDRQLSQEELGLRANVHRTYIGMLEREEYNPTIEMLEKLAAALDLKVV 63 Query: 79 KLLK 82 K Sbjct: 64 DFFK 67 >gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4] gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4] Length = 178 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R LT +++ ++ G + IS++E G + +++ M +A LD PL+ L + Sbjct: 5 RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTDPSLETMRRIAEVLDIPLFSLFQ 62 >gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 179 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++R + LTQ+E+ R+ + +IS+LE ++ ++D++ L + L T + Sbjct: 4 GEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDM 58 >gi|161505447|ref|YP_001572559.1| hypothetical protein SARI_03605 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866794|gb|ABX23417.1| hypothetical protein SARI_03605 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 204 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 29 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 88 Query: 81 LKP 83 L+P Sbjct: 89 LEP 91 >gi|330960406|gb|EGH60666.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 189 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E H +L+ N R +R A L+Q + +++G ++ + +E G+ +++ + Sbjct: 4 EHHRRAPVLQH---VSQNVRRLRNAADLSQTALADKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 68 ILAHTLDTPLWKLLK 82 +A LD L++ Sbjct: 61 RVAEALDVAFSDLIQ 75 >gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans C54] Length = 184 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ L+ +++ RTG +S++S+LE G S +I ++ LA + +L+ Sbjct: 7 RLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQLV 63 >gi|91204486|emb|CAJ70986.1| similar to immunity repressor protein [Candidatus Kuenenia stuttgartiensis] Length = 151 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L + I +N R IR+ +TQ+E+ R+G Q +I+ LE GK + ++ + + L Sbjct: 19 KFLMRKNIVGSNVRMIRERLGITQEELALRSGLTQGYINFLENGKRGYSERSLEKIVNAL 78 Query: 74 DTPLWKLL 81 + L Sbjct: 79 GIQISGLF 86 >gi|297581782|ref|ZP_06943703.1| DNA methyltransferase [Vibrio cholerae RC385] gi|297533876|gb|EFH72716.1| DNA methyltransferase [Vibrio cholerae RC385] Length = 69 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I IRK L+Q ++ + +S++ +E G+ I ++ + LA TL +L Sbjct: 8 IVGKRIAKIRKSKGLSQDKLALLSEIDRSYVGRIERGEVNITLEKLYELADTLGCDAKEL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus hydrogenoformans Z-2901] Length = 257 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R+E LT E+ + G + S++SE+E G ++ + +A L+ ++L+ Sbjct: 5 GNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILE 64 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IR+E KLT E+ R G + S++SE+E ++ + +A L + Sbjct: 72 LTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSVAD 131 Query: 80 LL 81 L+ Sbjct: 132 LM 133 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R++ LTQ E+ ++ G + I ++E GK ++ + LA L T Sbjct: 137 HSLGYKLKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTP 194 >gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 91 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + +N R R++A L+Q E+ R +Q+ I+ +ETGK T ++D ++ + H L+ Sbjct: 6 QQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINP 65 Query: 78 WKLL 81 L Sbjct: 66 AVLF 69 >gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 80 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RNIR + +TQ+E+ TG QS IS E G I + ++ L+ P+ KLL Sbjct: 3 VGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|239814897|ref|YP_002943807.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801474|gb|ACS18541.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 89 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+ + R +S++ E+E G+ +I LA LD + LL Sbjct: 8 FGVTIRQLREGKGWSQEALAERADLNRSYVGEVERGRVIPSIVTAHKLAAALDINMVGLL 67 >gi|183220520|ref|YP_001838516.1| putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910629|ref|YP_001962184.1| transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775305|gb|ABZ93606.1| Transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778942|gb|ABZ97240.1| Putative transcriptional regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 207 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IR + ++ NR G +++ +S++E GKS I + +A+ L+ P +L Sbjct: 26 VVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSEL 85 Query: 81 LK 82 LK Sbjct: 86 LK 87 >gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2] Length = 183 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R A L+ E+ R G +S +S LE G +++ M LA LD PL Sbjct: 6 REQIAAAIKRERLRADLSLSEVARRAGIGKSTMSGLEAGTGNPSVETMWALAAALDIPLA 65 Query: 79 KLLKP 83 +LL P Sbjct: 66 RLLDP 70 >gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] Length = 181 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 211 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IRK L+ + R+G + +S+LE G ++ + ++ L P + Sbjct: 5 HLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFW 64 Query: 80 LLK 82 LL+ Sbjct: 65 LLE 67 >gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 180 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|91774792|ref|YP_544548.1| transcriptional regulator [Methylobacillus flagellatus KT] gi|91708779|gb|ABE48707.1| transcriptional regulator, XRE family with cupin sensor domain [Methylobacillus flagellatus KT] Length = 212 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 K+ P D+ I N ++IR++ LT E+ R ++ +S++E G + ++ Sbjct: 6 KKTSPAGGDSEIKPLGKHLGNVIKDIRQQHGLTIAEVAERANISRGMLSKIENGLVSTSL 65 Query: 64 DNMIILAHTLDTPLWKLLK 82 D + LA++L + +L + Sbjct: 66 DTLEQLANSLGVTISRLFQ 84 >gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925] gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925] Length = 185 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M + +R E LTQ ++ +R ++ +IS+LE ++ +I ++ + L T L Sbjct: 5 EVMKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNL 64 Query: 78 WKLL 81 Sbjct: 65 KDFF 68 >gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 116 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I RN RK A +Q+ + + G +++ ++E G+S ++ ++ +A+ L+ PL L Sbjct: 9 IIGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPLEIL 68 Query: 81 LK 82 + Sbjct: 69 FE 70 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I R RKE L+ E+ G +Q +S E G+ I +DN++ LA L+T L Sbjct: 6 QIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDL 63 >gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)] Length = 71 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +RK ++Q+++ ++ +++++++E GK +I + ++ L+ L + Sbjct: 7 ESLGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVNPSIGKIKKISENLNISLCE 66 Query: 80 LLK 82 + K Sbjct: 67 MFK 69 >gi|313677734|ref|YP_004055730.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944432|gb|ADR23622.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 494 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF R +R E L+ ++ +TG + S+++E+E GK I+ + L+ TL+ Sbjct: 9 KLIFGLKVRQLRLEKGLSFAQLSKQTGLSASYLNEIEKGKKYPKIEKINKLSETLEVSFD 68 Query: 79 KLL 81 L+ Sbjct: 69 DLV 71 >gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor [Clostridium thermocellum ATCC 27405] gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 179 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M R +R ++TQ+E+ +R ++ +IS++E ++ +I+ ++ + L T L Sbjct: 1 MQIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLTSPSINTLVDILQCLGTDL 58 >gi|167462690|ref|ZP_02327779.1| DNA-binding protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384965|ref|ZP_08058621.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150262|gb|EFX43769.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 241 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +NIRK + TQKE+ G ++ ++S++E + ++ + +A + + +L Sbjct: 4 GDRIKNIRKALRYTQKEVAENAGISRMYLSDVEKNRYNPSLSVIEKIAEAMGISVDRL 61 >gi|269794969|ref|YP_003314424.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269097154|gb|ACZ21590.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 204 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ H + R RK+ L+ + + R G + +S+LE G ++ Sbjct: 5 RETSAGHAPSDDADTVAMLGATVRAARKQLDLSVQALAQRAGVSLGLVSQLERGLGNPSL 64 Query: 64 DNMIILAHTLDTPLWKLLKP 83 ++ LA L + +LL+P Sbjct: 65 HSIQRLASALGVSVTRLLEP 84 >gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT] gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 185 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M + +R E LTQ ++ +R ++ +IS+LE ++ +I ++ + L T L Sbjct: 5 ELMNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNL 64 Query: 78 WKLL 81 Sbjct: 65 KDFF 68 >gi|83956173|ref|ZP_00964626.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] gi|83839559|gb|EAP78739.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] Length = 164 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPL 77 R N + +R+E ++Q+++ + ++ +LE K++ ++D + +A L+ P Sbjct: 4 RHQVGLNIQKLRRERGISQEDLALMAKVNRGYMGKLENAKNSASLDMVERIATALNVVPS 63 Query: 78 WKLL 81 W L+ Sbjct: 64 WLLV 67 >gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] Length = 182 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RK+ K++Q ++ ++ +S IS++E GK+T ++ + +A D P+ Sbjct: 6 VGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPM 61 >gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] Length = 182 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RK+ K++Q ++ ++ +S IS++E GK+T ++ + +A D P+ Sbjct: 6 VGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPM 61 >gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] Length = 179 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R IRKE L+Q+++ ++ +S+ E G ++ +++L++ L+ L Sbjct: 1 MSFAEHLRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAGYPEVETLLLLSNRLNISLDS 60 Query: 80 LL 81 L+ Sbjct: 61 LM 62 >gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 210 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 38 VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 91 >gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB056] gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB058] gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB059] gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 183 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 11 VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 >gi|182415256|ref|YP_001820322.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177842470|gb|ACB76722.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 76 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ +E R RK L+Q++ R ++++ ++E G+ I+ N++ +A Sbjct: 1 MAAESAKELRALGEAIRAGRKTLGLSQEDFAERCDVHRTYVGQVERGEKNISFTNVLRIA 60 Query: 71 HTLDTPLWKLL 81 + LL Sbjct: 61 RAIGQKPSVLL 71 >gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] Length = 210 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 38 VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 91 >gi|26988956|ref|NP_744381.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983771|gb|AAN67845.1|AE016415_10 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 177 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R++R A L+Q + R+G ++ + +E G+ +++ + ++A L L++ Sbjct: 8 NVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLIQ 65 >gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262] gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262] gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 180 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023] Length = 180 Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|332665384|ref|YP_004448172.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332334198|gb|AEE51299.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 495 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S ER++F + +R+ L+ ++ + G + S+++E+E GK + + LA Sbjct: 1 MSTKAQNERILFGLKVKQLRQRLSLSFADLSEKAGMSVSYLNEIEKGKKYPKGEKIQTLA 60 Query: 71 HTLDTPLWKL 80 L+ L Sbjct: 61 RALNVSATDL 70 >gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 184 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R++A L+ E+ R G A+S +S+LE+G +++ + L+ L +L++ Sbjct: 11 AASLQRERRKAGLSLAELARRAGIAKSTLSQLESGSGNPSVETIWALSTALGVSFSQLVQ 70 Query: 83 P 83 P Sbjct: 71 P 71 >gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 83 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + R E +Q+ + TG +++IS+LE G + ++ + + L + + Sbjct: 8 QILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITKALGMTMSE 67 Query: 80 LLKP 83 L+P Sbjct: 68 FLQP 71 >gi|291545572|emb|CBL18680.1| Helix-turn-helix [Ruminococcus sp. SR1/5] Length = 97 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R+ LTQ+E+ + + +S +E G +D + +A+ LD Sbjct: 4 KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 77 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+A +TQ E+ + G +S+IS +ETGK+ + +A L Sbjct: 17 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68 >gi|167758894|ref|ZP_02431021.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] gi|167663634|gb|EDS07764.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] Length = 108 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + +TQ+ + + S+I ++E G+ + +D++I + + L + LL Sbjct: 6 LGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVTVDYLL 65 Query: 82 K 82 + Sbjct: 66 Q 66 >gi|330892406|gb|EGH25067.1| hypothetical protein PSYMO_27871 [Pseudomonas syringae pv. mori str. 301020] Length = 78 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R K+TQ+ + + G ++++S +E G + + LA L++ L+ Sbjct: 7 FGKVLREARLSQKVTQEALAAQAGLQRNYVSLMERGHHQPTLATIFALAVALNSSPLDLV 66 Query: 82 K 82 K Sbjct: 67 K 67 >gi|229591296|ref|YP_002873415.1| putative transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229363162|emb|CAY50204.1| putative transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 191 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 ++ PH + + N R +R A L+Q + ++G ++ + +E G+ +++ Sbjct: 7 KENPHRASVLQH----VSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLST 62 Query: 66 MIILAHTLDTPLWKLLK 82 + +A L+ L++ Sbjct: 63 LDRVAEALNVAFSDLIQ 79 >gi|163940192|ref|YP_001645076.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229060070|ref|ZP_04197441.1| Transcriptional regulator, XRE [Bacillus cereus AH603] gi|163862389|gb|ABY43448.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228719289|gb|EEL70897.1| Transcriptional regulator, XRE [Bacillus cereus AH603] Length = 197 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 17 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 76 >gi|332522147|ref|ZP_08398399.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313411|gb|EGJ26396.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 138 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N R + +Q + +R ++ IS+ E G ST +++N++ LA D L +L+ Sbjct: 4 FAEQLKNYRLKKNYSQDALADRLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLV 63 Query: 82 K 82 + Sbjct: 64 R 64 >gi|254000130|ref|YP_003052193.1| XRE family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313202093|ref|YP_004040751.1| XRE family transcriptional regulator [Methylovorus sp. MP688] gi|253986809|gb|ACT51666.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|312441409|gb|ADQ85515.1| transcriptional regulator, XRE family [Methylovorus sp. MP688] Length = 215 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 SDA R + N R IR + LT +I R ++ +S++E G + +++ + +A Sbjct: 18 DSDARSLGRHL-GNVIRQIRLQHGLTIADISERASISRGMLSKIENGLVSTSLETLEQIA 76 Query: 71 HTLDTPLWKLLK 82 + L L +L + Sbjct: 77 NALGVTLSRLFR 88 >gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] Length = 183 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ +G ++ +S++E G + I+ + +A L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 212 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 5/84 (5%) Query: 3 RRKRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 + A+ +R R++RK ++T E+ +TG + +S++E G Sbjct: 4 GSQSKLTQNPHAVREQREKNLEVAIGRQVRDLRKRQRMTGSELAQQTGLSVGMLSKIENG 63 Query: 58 KSTINIDNMIILAHTLDTPLWKLL 81 + +++ + LA+ L PL +L Sbjct: 64 VISPSLNTLQALANALRVPLVQLF 87 >gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani E88] gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ +G ++ +S++E G + I+ + +A L P L Sbjct: 58 IIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSL 117 Query: 81 LK 82 L+ Sbjct: 118 LE 119 >gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e] gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland 1988] gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL R2-561] gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S] gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161] gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes FSL J2-003] gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e] gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 180 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|149173147|ref|ZP_01851778.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] gi|148847953|gb|EDL62285.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] Length = 73 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RK+ +Q+ ++++ +E G+ + + N+ +A TL + +L+ Sbjct: 11 FGERVRELRKKQGYSQENFAYACELDRTYMGGIERGQRNVALRNIERIADTLGISVAELM 70 >gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis BI429] gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho melanesiensis BI429] Length = 178 Score = 58.9 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +R TQ+E+ +R ++S+IS+LE + + +ID + + L + L Sbjct: 4 LGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDL 59 >gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] Length = 182 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 36/63 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R E L+ +++ R + S++S++E GK++ +I+N+ +A+ LD + Sbjct: 1 MSLGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKASPSIENLKKIANCLDVRVSY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 183 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ +G ++ +S++E G S I+ + +A L+ P L Sbjct: 6 IIAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSNPTINTVWKIAKGLNVPYTVL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|240126773|ref|ZP_04739659.1| conjugal transfer protein TrbA [Neisseria gonorrhoeae SK-92-679] gi|268685351|ref|ZP_06152213.1| TrbA [Neisseria gonorrhoeae SK-92-679] gi|295788840|ref|YP_003600455.1| TrbA [Neisseria gonorrhoeae] gi|268625635|gb|EEZ58035.1| TrbA [Neisseria gonorrhoeae SK-92-679] gi|294769581|gb|ADF36656.1| TrbA [Neisseria gonorrhoeae] gi|317165624|gb|ADV09163.1| hypothetical protein NGTW08_p0033 [Neisseria gonorrhoeae TCDC-NG08107] Length = 121 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF N + E L+ +++ R + S +S + G+ ++ M +A+ LD PL Sbjct: 5 KIFFTNVLRLASEKNLSHQDLAERANLSPSSMSGITRGQGNPTLETMSAIAYALDVPLSY 64 Query: 80 LLK 82 LL+ Sbjct: 65 LLE 67 >gi|167645955|ref|YP_001683618.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348385|gb|ABZ71120.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 74 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++ N R +R+ + Q E+ + +++S +E GK I++ + LA L Sbjct: 4 RVVVGANIRALREARGVPQDELAHIAEIHTTYLSGIENGKRNISLRVLERLAAALAVTEA 63 Query: 79 KLLK 82 +L++ Sbjct: 64 ELVR 67 >gi|302339884|ref|YP_003805090.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637069|gb|ADK82496.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 102 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF+ N R IR +Q + + G + ++I+ LE+G+ + + L L+ + Sbjct: 5 QQIFIKNLRRIRNTTGQSQSSVAEKCGLSTNYIAGLESGRRFPSPATIDKLCVALEIRPY 64 Query: 79 KLL 81 +L Sbjct: 65 ELF 67 >gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 141 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F N + +RKE ++Q+++ ++ IS+LE+GK+ +IDN+I+L L Sbjct: 3 FNNKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSL 58 >gi|294101545|ref|YP_003553403.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616525|gb|ADE56679.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 123 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK A+LTQ+ + ++T ++ +I LE+ + ++ + LA LD + Sbjct: 1 MSLGIRIKTLRKAARLTQQALADKTDVSRIYIQALESNRRLPSMKLLSKLAQALDVEITD 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11] gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977] gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus] Length = 191 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R+E L+ ++ R+G ++ +S++E G ++ + +L L P +L Sbjct: 7 LVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQVPPQRL 66 Query: 81 LK 82 L Sbjct: 67 LT 68 >gi|13475101|ref|NP_106665.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025852|dbj|BAB52451.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 69 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +R + LTQ+E+ R + ++ +E + + ++ + LA LD Sbjct: 4 KEVMAINMRRLRHDQDLTQEELAARAELSMRYVGSIERARVSASVSVLGQLAKALDVDPC 63 Query: 79 KLLKP 83 +L++P Sbjct: 64 ELIRP 68 >gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 211 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IRK L+ + R+G + +S+LE G ++ + ++ L P + Sbjct: 5 HLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFW 64 Query: 80 LLK 82 LL+ Sbjct: 65 LLE 67 >gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ L+ +++ RTG +S++S+LE G S +I ++ LA + +L+ Sbjct: 7 RLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQLV 63 >gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 104 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 8 EPHLSDAILRE----RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 PH+++ + + + N R +R + ++Q+ + +R G ++ +S +E G + + Sbjct: 3 LPHMAENVSPRLLELQALIAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRL 62 Query: 64 DNMIILAHTLDTPLWKLL 81 D ++ LA L +LL Sbjct: 63 DTLVSLAAALGVSETELL 80 >gi|153009178|ref|YP_001370393.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561066|gb|ABS14564.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 76 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N + +R+ L+Q+E+ +R ++++S LE + +ID + LA L+ Sbjct: 4 REVLAQNLKALRQARGLSQEELAHRADIDRTYVSSLERCVYSASIDVVDRLAIVLEVEAS 63 Query: 79 KLLK 82 LLK Sbjct: 64 DLLK 67 >gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 179 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 39/78 (50%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + H+ ++ + RN+R+ A L+Q+++ R ++++S++E K+T + Sbjct: 50 PQPAVHVPSHSSHSQLQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLS 109 Query: 65 NMIILAHTLDTPLWKLLK 82 ++ LA L L LL Sbjct: 110 SLERLAKALQVTLPDLLT 127 >gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 34/54 (62%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++R + LT KE+ +TG + S++S++E G S++ I ++ +A L+ P+ Sbjct: 6 EKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPI 59 >gi|294632875|ref|ZP_06711434.1| DNA-binding protein [Streptomyces sp. e14] gi|292830656|gb|EFF89006.1| DNA-binding protein [Streptomyces sp. e14] Length = 190 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D E + + R R+ + E+ R+G +Q ++S+LE G +T ++ ++ +A Sbjct: 4 PDPS-PEALAVGSVIRGHRRRLGVPMAELAARSGLSQPFLSQLERGLTTPSLASIYKIAD 62 Query: 72 TLDTPLWKLLKP 83 L P L+P Sbjct: 63 ALSLPPGIFLRP 74 >gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ K+T +E+ + G S +S++E G+ +I+ + +++ L+ P++K Sbjct: 7 GKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMFKFF 65 >gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R R L+ E+ R G A+S +S+LE+G +++ + LA L P + Sbjct: 25 EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSR 84 Query: 80 LLKP 83 L+ P Sbjct: 85 LVDP 88 >gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+E LTQ E+ + G + + I+ E GK I ID++ +A+ L PL L Sbjct: 6 GARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYFL 64 >gi|89899047|ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343784|gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 197 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + + ++M R R+ LT E+ ++G + +S++E G S+ ++ +M Sbjct: 3 KQTTASADAQKMGLGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQ 62 Query: 69 LAHTLDTPLWKLL 81 + L PL L Sbjct: 63 ICTALGVPLSWLF 75 >gi|302188150|ref|ZP_07264823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 201 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPTDPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 229 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%) Query: 9 PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 PH RE+++ R RK+ +T E+ TG + +S++E G ++ ++ Sbjct: 29 PHSIREGEREKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTT 88 Query: 66 MIILAHTLDTPLWKLLK 82 + LAH L PL + Sbjct: 89 LQTLAHALSVPLTSFFR 105 >gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|300724430|ref|YP_003713750.1| BamHI control element (fragment) [Xenorhabdus nematophila ATCC 19061] gi|297630967|emb|CBJ91647.1| BamHI control element (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 56 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 26/47 (55%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+ ++ G ++++S +E G ++ + ++A+ L L +L Sbjct: 1 MSQEAFADKCGLDRTYVSGIERGVRNPTLEIIYVIANGLQIELNELF 47 >gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 252 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E + +++ R G + S++SE+E G ++ + +A L+ P +L++ Sbjct: 5 GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIE 64 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R+E LTQ E+ G + I ++E GK ++ + + LD Sbjct: 138 LGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKTLERVGAVLDISP 193 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ A + G + S++SE+E G ID + + L+ PL Sbjct: 74 GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPL 128 >gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] Length = 211 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IRK L+ + R+G + +S+LE G ++ + ++ L P + Sbjct: 5 HLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFW 64 Query: 80 LLK 82 LL+ Sbjct: 65 LLE 67 >gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E IF + +R+EA LTQ E+ + G ++ +S E G +ID + +A D Sbjct: 2 EENIFAVRLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIAMYFDVSS 61 Query: 78 WKLL 81 LL Sbjct: 62 DYLL 65 >gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] Length = 185 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ L+ E+ +G +++ +S+LE+G S +D + +A L PL L Sbjct: 10 GQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSNPRVDTLEAIAIALRFPLSDLFT 69 >gi|206975640|ref|ZP_03236552.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] gi|206746102|gb|EDZ57497.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] Length = 110 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R + LTQ+ + + S++ ++E G+ +++D ++ LA+ L + LL Sbjct: 6 LGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVTVDYLL 65 >gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 105 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R IRK+ + +++ +TG + S+IS +E G ++ + +A L+ P Sbjct: 3 VGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLP 57 >gi|306521451|ref|ZP_07407798.1| putative phage DNA-binding protein [Clostridium difficile QCD-32g58] Length = 166 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M N + IRK+ +LTQ ++ +G +++ + E K +ID + LA L Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 57 >gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] Length = 177 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R A LTQ+E+ +R ++ +IS+LE ++ +I ++ + L + Sbjct: 4 GSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKDFF 62 >gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 120 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +TQ+++ N G + IS +ETG S ++ +I + + LD +LL Sbjct: 8 GKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSADELL 66 >gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 179 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E LTQ ++ +R ++ +IS+LE ++ +I ++ + L T L Sbjct: 4 GEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKDFF 62 >gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 181 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 81 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R E ++Q+ + TG +S + +E G+ + I N+I +A L+ KLLK Sbjct: 18 GATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKLLK 77 >gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 221 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK +LT + TG + +S++E G + +++ + +LA L PL +L Sbjct: 38 GRQVRELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPLMQLF 96 >gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064] gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175] gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816] gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|134293636|ref|YP_001117372.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136793|gb|ABO57907.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 191 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 +D + + N R +R+ KLT E G ++ ++S++E G++T +I +++ + Sbjct: 3 VSADQSVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRI 62 Query: 70 AHTLDTPL 77 A L + Sbjct: 63 AQALGVTM 70 >gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] Length = 647 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK A TQ+++ + ++ +S+ E G+S ++D + LA+ + +L+ Sbjct: 3 LAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSVPSLDKLRQLANCFGISVDELV 62 Query: 82 K 82 + Sbjct: 63 Q 63 >gi|187934446|ref|YP_001886145.1| MerR family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722599|gb|ACD23820.1| transcriptional regulator, MerR family [Clostridium botulinum B str. Eklund 17B] Length = 118 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + LT KE+ TG + S+IS++E + +IDN+ ILA LD + + Sbjct: 1 MSVGEKLKLFRNKKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQ 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R + LTQ+E+ RT ++ +IS+LE ++ +I+ + + L + Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKD 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|288921295|ref|ZP_06415578.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347326|gb|EFC81620.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 210 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R ++ R +R+E T +++ + + ++SE+E G+ + + + + L Sbjct: 15 VTPPLRDLYGEALRRLRREQGRTLRDVADAAQVSMPYLSEVERGRKEASSEVLAAICRAL 74 Query: 74 DTPLWKLL 81 L LL Sbjct: 75 GIRLVDLL 82 >gi|316934629|ref|YP_004109611.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315602343|gb|ADU44878.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 86 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I N R R+ L+Q+E+ +R +++IS LE ID + +A L Sbjct: 4 REILALNLRKYRRARGLSQEELAHRADIDRTYISALERCVYAAGIDVVDRIARVLGVEAA 63 Query: 79 KLLK 82 LL+ Sbjct: 64 DLLR 67 >gi|167747594|ref|ZP_02419721.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662] gi|239623032|ref|ZP_04666063.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652956|gb|EDR97085.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662] gi|239522611|gb|EEQ62477.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 123 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R R+E LTQ+ + G + S +S++E+G TI + I + L+ Sbjct: 10 ENIRRAREERGLTQEALAELAGISHSHLSKVESGSRTIGMKTYIKILEALEV 61 >gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 190 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 SD + R NN + +R L+ E+ +G +++ +S LE+G S +D + + Sbjct: 5 QQSDRLKRTYTNIGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSNPRVDTLDSI 64 Query: 70 AHTLDTPLWKLL 81 A L L LL Sbjct: 65 ASALRLTLGDLL 76 >gi|167589656|ref|ZP_02382044.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 76 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G++ ++ + +A D + LL Sbjct: 8 FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASLVTVDKIARAFDVSISTLL 67 >gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 184 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R+ + ++ E+ R G A+S +S+LE+G +++ + L LD P+ +LL Sbjct: 11 GPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQLLD 70 Query: 83 P 83 P Sbjct: 71 P 71 >gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 180 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|319793353|ref|YP_004154993.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595816|gb|ADU36882.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 89 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ R+ +S++ E+E G+ +I LA L + LL Sbjct: 8 FGVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGINIVNLL 67 >gi|307330189|ref|ZP_07609338.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884209|gb|EFN15246.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|225019713|ref|ZP_03708905.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum DSM 5476] gi|224947558|gb|EEG28767.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum DSM 5476] Length = 83 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + + +R+ ++Q+ + G ++ S++E G + ID + + L Sbjct: 1 MVDTKLIGAVIQQLRQRKGISQEVLSGLAGLDRTHYSKIERGLRSPTIDTLFKIGSALQM 60 Query: 76 PL 77 P Sbjct: 61 PP 62 >gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 60 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ E+ +RTG +Q IS +E G+ +++ + LA LDT + +LL Sbjct: 2 KKLKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVDQLL 59 >gi|209520107|ref|ZP_03268882.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209499480|gb|EDZ99560.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 70 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++R+ +Q+++ G +S++ E+E G + +I LA L+ P+ LL Sbjct: 8 FGAAVRSLREALSWSQEQLAEYAGLNRSYVGEIERGSAIASIVTADKLARALNVPIGTLL 67 >gi|323341429|ref|ZP_08081671.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|323091136|gb|EFZ33766.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 113 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 + R R A +TQ+E+ + + ++IS++E K ++I+ ++ + + LD + ++ Sbjct: 7 LGSKIRKYRHLAGMTQEELAEYSNLSVNYISKIEREKKQNVSIEKLVDICNALDISVEEI 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|163734643|ref|ZP_02142082.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392136|gb|EDQ16466.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 218 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 9 PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 PH + RE+++ R RK+ +T E+ TG + +S++E G ++ ++ Sbjct: 18 PHGTRDGEREKVLEVAIGREVRGYRKQQGITVAELSALTGISIGMLSKIENGNTSPSLTT 77 Query: 66 MIILAHTLDTPLWKLLK 82 + LA+ L PL + Sbjct: 78 LQTLANALSVPLTSFFR 94 >gi|154498955|ref|ZP_02037333.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] gi|150271795|gb|EDM99021.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC 29799] Length = 115 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R+ A LTQ + G + +++S +E G+ + ++ + A L+ + Sbjct: 8 EIIGTNIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMKVETLYATAKALNVSVNA 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 81 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ L+Q+ + + TG +S + +E G+ + + N++ +A L+ L +L Sbjct: 16 LLGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQL 75 Query: 81 L 81 Sbjct: 76 F 76 >gi|261368944|ref|ZP_05981827.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568951|gb|EFB74486.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 108 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R R E L Q+++ G + +++ +E G+ T +++ ++ + + L+ +L Sbjct: 7 GRNIRQYRLERDLRQEDLAEAVGVSTNYMGMVERGEKTPSLETLVAILNALEISADMVLT 66 >gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 192 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ A L+ E+ R+G A+ +S+LE+G I+ + L++ L P+ L Sbjct: 1 MLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 60 Query: 81 LK 82 L Sbjct: 61 LT 62 >gi|330951980|gb|EGH52240.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] Length = 199 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 PTDPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSR 61 Query: 69 LAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 LCDVLGMPMSKLF 74 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + +N ++ RK LTQ+++ R G ++ +++ ETG ST ++ N LA LD L Sbjct: 2 KNMIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLD 61 Query: 79 KLL 81 L+ Sbjct: 62 ALV 64 >gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 118 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RN R + ++Q +I RTG + ++S +E G + ++D + +A +D L Sbjct: 4 GETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVAL 58 >gi|255616990|ref|XP_002539799.1| conserved hypothetical protein [Ricinus communis] gi|223502237|gb|EEF22585.1| conserved hypothetical protein [Ricinus communis] Length = 76 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R +R E L+Q+ + G +++IS+LE G ++ + L L Sbjct: 6 KAFGSLLRELRNERALSQEALAADAGLTRNYISQLELGSKCPSLRTVFKLCKVLGVAPED 65 Query: 80 LL 81 ++ Sbjct: 66 VV 67 >gi|229011674|ref|ZP_04168857.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|229133251|ref|ZP_04262082.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST196] gi|228650195|gb|EEL06199.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST196] gi|228749632|gb|EEL99474.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 205 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 84 >gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A ++ E+ +G + S +S +E G + +++ + LA+ L P +L Sbjct: 10 GTQVRALRMAADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRLF 68 >gi|152995548|ref|YP_001340383.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836472|gb|ABR70448.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 176 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L+ ++ G A+S +S +E G+ ++ + LA L+ P L+ Sbjct: 9 LGRNIQKMRMAKGLSLSQLALDAGLAKSNLSRIEQGEGNPTLETIWRLAVQLNVPFGDLV 68 >gi|302532682|ref|ZP_07285024.1| transcriptional regulator [Streptomyces sp. C] gi|302441577|gb|EFL13393.1| transcriptional regulator [Streptomyces sp. C] Length = 191 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R R +++ + R+G +Q ++S+LE G +T ++ ++ +A LD Sbjct: 8 PEAIEVGRAIRECRTARRVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALDVA 67 Query: 77 LWKLLKP 83 L+P Sbjct: 68 PGTFLRP 74 >gi|146302279|ref|YP_001196870.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156697|gb|ABQ07551.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 76 Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R++ L+Q+++ + G ++ I +E K I +I +A+ LD L LL Sbjct: 12 LGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELADLL 71 >gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2] gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2] Length = 147 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK+ TQ ++ + ++S+++++E + +++ + +A L+ P+ Sbjct: 1 MSVGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYNPSVETLSSIAKALNIPVSN 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 490 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 38/75 (50%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E LS + + F +++RK+ LT ++ R G A S +S LE GK + + Sbjct: 7 EEQLSLTHELDLLAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLK 66 Query: 68 ILAHTLDTPLWKLLK 82 LA L+ P+ +LL+ Sbjct: 67 SLATALNVPVEELLR 81 >gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 186 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R R L+ E+ R G A+S +S+LE+G +++ + LA L P + Sbjct: 10 EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSR 69 Query: 80 LLKP 83 L+ P Sbjct: 70 LVDP 73 >gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 62 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+R+ LTQ+E+ RT ++ +IS++E+ ++ +++ + + L T + Sbjct: 4 GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFF 62 >gi|237739116|ref|ZP_04569597.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423716|gb|EEO38763.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 187 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIRK KL KE+ ++ G + S +S++E G + +++ + +A L+ PL+K Sbjct: 9 VGMTIKNIRKSKKLLLKEVASKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 68 >gi|320449325|ref|YP_004201421.1| methyltransferase [Thermus scotoductus SA-01] gi|320149494|gb|ADW20872.1| methyltransferase [Thermus scotoductus SA-01] Length = 570 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LT + + G A+S + LE G++ + + LA L+ P +L+ Sbjct: 9 VGQNLRRLRQARGLTLSGLAAKAGIAKSLLHALEAGRANPTLATLWALARALEVPFGELV 68 Query: 82 K 82 + Sbjct: 69 Q 69 >gi|312140854|ref|YP_004008190.1| transcriptional regulator [Rhodococcus equi 103S] gi|311890193|emb|CBH49511.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 198 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R E +++ ++ R ++ +S++E G ++ + +A LD PL +L Sbjct: 6 LIARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNPTVETIDAIATALDVPLRRL 65 Query: 81 LK 82 + Sbjct: 66 VT 67 >gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf] Length = 92 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R +R+E +LTQ+E+ ++ +S E G++ ID ++ +A+ + L L Sbjct: 1 MFGDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 58.1 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +TQ+++ N G + IS +ETG S ++ +I + + LD +LL Sbjct: 8 GKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSADELL 66 >gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905] gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905] Length = 181 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RK LT +E+ G S +S++E G + +I + +LA TLD P Sbjct: 2 ENIDIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPT 61 Query: 78 WKLL 81 + Sbjct: 62 FTFF 65 >gi|62182502|ref|YP_218919.1| hypothetical protein SC3932 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130135|gb|AAX67838.1| hypothetical protein SCH_3932 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|320088451|emb|CBY98210.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322716998|gb|EFZ08569.1| hypothetical protein SCA50_4196 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132385|gb|ADX19815.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 204 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 29 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 88 Query: 81 LKP 83 L+P Sbjct: 89 LEP 91 >gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 84 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R++ +L+Q+ + N G +SE+E G + LA L + +L Sbjct: 13 LARTIRQLRRDRELSQEALANAAGVHPKHLSEIERGNKDPRASTVARLADALGVSIGEL 71 >gi|241759132|ref|ZP_04757240.1| Helix-turn-helix [Neisseria flavescens SK114] gi|241320551|gb|EER56828.1| Helix-turn-helix [Neisseria flavescens SK114] Length = 76 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R IRK++ + Q+ + +S++ +E G+ I ID + L+ L+ + L Sbjct: 7 LIGIKIREIRKQSNINQESLALLADIDRSYMGRIERGEVNITIDKLYQLSSALNCSVHDL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|153810196|ref|ZP_01962864.1| hypothetical protein RUMOBE_00577 [Ruminococcus obeum ATCC 29174] gi|149833375|gb|EDM88456.1| hypothetical protein RUMOBE_00577 [Ruminococcus obeum ATCC 29174] Length = 124 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H+ +E +F F+N R E KLT +E+ + + ++ E+E G + + L Sbjct: 5 HMPKQTDKELGLF---FKNARHEQKLTYEELAEKAEMSSRYLKEIENGGRVPSFHKIRKL 61 Query: 70 AHTLDTPLWKLLKP 83 L+ P L P Sbjct: 62 VRALNVPPEPLFYP 75 >gi|28869772|ref|NP_792391.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28853017|gb|AAO56086.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 209 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + + P+ L+ + R+ +L ++ G +Q +S++E + + ++ Sbjct: 7 QPMNMPNEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSL 66 Query: 64 DNMIILAHTLDTPLWKLL 81 DN+ L L P+ KL Sbjct: 67 DNLSRLCDVLGMPMSKLF 84 >gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162] Length = 211 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LTQ+E+ +R+ + +IS+LE ++T +I ++ + L T + Sbjct: 65 GKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNTPSIGTLLDIIQCLGTTPAEFFT 124 >gi|17547868|ref|NP_521270.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430173|emb|CAD16858.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 KR +P S + + R A +Q+ + +++IS +E G + +I+ Sbjct: 8 KRTDPSTSRPAPILSAL-GERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIE 66 Query: 65 NMIILAHTLDTPLWKLLKP 83 + + + L+ L +L P Sbjct: 67 TLANICYALNVTLAELFGP 85 >gi|330976223|gb|EGH76285.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 6 HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 65 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 66 VAEALEVAFSDLIQ 79 >gi|293364818|ref|ZP_06611535.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291316268|gb|EFE56704.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 115 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R IRKE L+Q+ + + G +IS LET S I ID + + L+ Sbjct: 7 QKYIGQRIRIIRKEKNLSQQNLSEKAGVGIDYISNLETKGSNIKIDTLEKIITALNITPS 66 Query: 79 KLLK 82 +L + Sbjct: 67 ELFE 70 >gi|257486736|ref|ZP_05640777.1| Fis family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010206|gb|EGH90262.1| Fis family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 156 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R F + + +R L+Q+ + + G +Q ++S+LE GKS +++D LA L Sbjct: 4 RHSFAASLQLLRIRKGLSQENLGDIEGSVSQPYVSKLELGKSAVSLDTSYQLAAALKVEP 63 Query: 78 WKLL 81 LL Sbjct: 64 ITLL 67 >gi|225570756|ref|ZP_03779779.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM 15053] gi|225160218|gb|EEG72837.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM 15053] Length = 199 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 5/80 (6%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RK L+D + + R+ R++ +T +++ TG + ++S LE ++ Sbjct: 10 GRKGAWKELNDI-----QLIGYSIRSQRRKKGMTLQQLSEATGLSIGYLSNLERNANSPT 64 Query: 63 IDNMIILAHTLDTPLWKLLK 82 + N+ + T L+ LL+ Sbjct: 65 LVNIQKICEAFGTSLFSLLE 84 >gi|241203027|ref|YP_002974123.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856917|gb|ACS54584.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 115 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R RK ++ KE+ ++G +Q ++SE+ETGK ++D + +A LD L + Sbjct: 60 VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDLDDV 114 >gi|154149916|ref|YP_001403534.1| XRE family transcriptional regulator [Candidatus Methanoregula boonei 6A8] gi|153998468|gb|ABS54891.1| putative transcriptional regulator, XRE family [Methanoregula boonei 6A8] Length = 91 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF R RK +++Q+ + TG +++IS +E GK + ++ + ++ + Sbjct: 13 EIFGKIIREERKAKEISQERLARLTGLDRTFISLIENGKRSPTFSTILKICSAIEIDPSE 72 Query: 80 LL 81 L Sbjct: 73 LF 74 >gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] Length = 295 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 38/62 (61%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++IRK+ ++Q+ + + G ++ +++ ETG +I+NMI +++ + + + Sbjct: 1 MTFAENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 177 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R A LTQ+E+ +R ++ +IS+LE ++ +I ++ + L + Sbjct: 4 GSKLKRLRVLAGLTQEELADRAELSKGFISQLENNITSPSIATLLDILQCLGVQIKDFF 62 >gi|194016129|ref|ZP_03054744.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012484|gb|EDW22051.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 187 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R +R + KL+ +++ TG +++ I ++E G+ST I + +A+ L +L Sbjct: 7 IISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSEL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum Rt17-B1] Length = 175 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R TQ+E+ +R ++S+IS+LE+ K + +++ + + L T L Sbjct: 4 GSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKVSPSVETLERVLRVLGTDLKHFF 62 >gi|325675508|ref|ZP_08155192.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707] gi|325553479|gb|EGD23157.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707] Length = 241 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 8 EPHLSDAILRERM------IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 E + + ER + N + R E +++ ++ R ++ +S++E G Sbjct: 30 EHRTAPSTSTERRPVDSNGLIARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNP 89 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + +A LD PL +L+ Sbjct: 90 TVETIDAIATALDVPLRRLVT 110 >gi|107029107|ref|YP_626202.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689734|ref|YP_835357.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733070|ref|YP_001765017.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105898271|gb|ABF81229.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116647823|gb|ABK08464.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169816312|gb|ACA90895.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 191 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + + N R +R+ KLT E G ++ ++S++E G++T +I +++ +A Sbjct: 5 PDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQ 64 Query: 72 TLDTPL 77 L + Sbjct: 65 ALGVTM 70 >gi|332297685|ref|YP_004439607.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180788|gb|AEE16476.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 107 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R RK TQ+++ + + +++++E G+ + +++ + ++ +L P L Sbjct: 7 VLGQNIRKFRKNLGWTQEQLAEKAQISVPFMTQIELGRKSASLEVIENISKSLGVPYDAL 66 Query: 81 LK 82 K Sbjct: 67 FK 68 >gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 211 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 183 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 11 VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 >gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] Length = 310 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++M F N +N+RK L+Q+++ + ++ +S+ E G S +D ++IL + Sbjct: 2 DKMNFNTNLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNM 61 Query: 78 WKLLK 82 +L+K Sbjct: 62 DELVK 66 >gi|320105370|ref|YP_004180960.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923891|gb|ADV80966.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 89 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + AI F + R +R++ ++Q+ + G+ +++I +LE G+ + ++ + LA Sbjct: 10 ARAIRSPEEAFGASLRVLREQVSISQETLAAEGGYHRTYIGQLERGEKSPSLRTIFALAQ 69 Query: 72 TLDTPLWKLLK 82 L LL+ Sbjct: 70 VLKVQPSDLLR 80 >gi|299065294|emb|CBJ36462.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 109 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 KR +P S + + R A +Q+ + +++IS +E G + +I+ Sbjct: 4 KRTDPSTSRPAPILSAL-GERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIE 62 Query: 65 NMIILAHTLDTPLWKLLKP 83 + + + L+ L +L P Sbjct: 63 TLANICYALNVTLAELFGP 81 >gi|260684687|ref|YP_003215972.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260688345|ref|YP_003219479.1| putative phage DNA-binding protein [Clostridium difficile R20291] gi|260210850|emb|CBA65947.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260214362|emb|CBE06743.1| putative phage DNA-binding protein [Clostridium difficile R20291] Length = 280 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N + IRK+ +LTQ ++ +G +++ + E K +ID + LA L Sbjct: 30 GKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 83 >gi|228908158|ref|ZP_04072006.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228851576|gb|EEM96382.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 96 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R E KLTQ+++ G ++ IS E KS +I ++I ++ D L LLK Sbjct: 6 GSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65 >gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 200 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R+ A L+ E+ R+G A+ +S+LE+G I+ + L++ L P+ Sbjct: 8 QVLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSS 67 Query: 80 LLK 82 LL Sbjct: 68 LLT 70 >gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 181 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LT KE+ S +S++E G + +I + +LA LD P Sbjct: 2 ENIDIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|229096902|ref|ZP_04227871.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] gi|228686512|gb|EEL40421.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] Length = 186 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|219667743|ref|YP_002458178.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538003|gb|ACL19742.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 371 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R +R+ L+ + +G +QS+I +E+G+ ++ + LA L L +LL Sbjct: 3 FGSHLRQLRENHMLSTSRLSKLSGLSQSFIFRIESGEKQPTLETLRKLAQGLGISLGELL 62 >gi|167753959|ref|ZP_02426086.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216] gi|167658584|gb|EDS02714.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216] Length = 106 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 36/67 (53%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E N R +RKE ++T +E+ R +S +S +E+G++ + + M I+ + L+ Sbjct: 40 QEEIKFISNKIRELRKEKQMTVQELAYRCDMERSNMSRIESGRTNLTVKTMCIICNALNV 99 Query: 76 PLWKLLK 82 L +++ Sbjct: 100 NLRDIIR 106 >gi|157691284|ref|YP_001485746.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157680042|gb|ABV61186.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 184 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R +R + KL+ +++ TG +++ I ++E G+ST I + +A+ L +L Sbjct: 7 IISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSEL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|134288000|ref|YP_001110164.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132650|gb|ABO60276.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 80 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+ R E ++TQ+ + G +++IS LE G+ + +D +++L L+ L + + Sbjct: 9 FGTVLRSFRIERRVTQESLGFSAGRDRTYISLLELGQRSPTLDTIVVLCRALNVTLNEFI 68 >gi|330897368|gb|EGH28787.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 286 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RK D A +RM F + + R+ AKL Q E+ R G Q+ IS+LE GKS Sbjct: 51 RKTDLQGYGSARNTQRMEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKATA 110 Query: 64 DNMIILAHTLDTP-LW 78 ++ +A LW Sbjct: 111 -HVAKIADVCGVNALW 125 >gi|295099191|emb|CBK88280.1| Predicted transcriptional regulator with C-terminal CBS domains [Eubacterium cylindroides T2-87] Length = 464 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 LR+R ++ R E ++Q E+ R G +S I+ LE+G +D ++ +A L Sbjct: 4 LRKRQKIISQLVEARLEQGISQAELARRLGIQRSGINRLESGTQNPTLDMILKIASALGK 63 >gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] Length = 177 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R LTQ+E+ +R ++ +IS++E ++ +I ++ + L T + + Sbjct: 1 MSIGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLTSPSIATLMDILQCLGTTIGE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|225405572|ref|ZP_03760761.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] gi|225042882|gb|EEG53128.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] Length = 81 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R+ + TQ+E G ++++ LE G+ ++ ++ +A L+ L L Sbjct: 17 FGNELRKMREARRYTQEEFAQLCGISRAYYGRLERGEHSVTLERCKQIADALNLTLSDLF 76 >gi|220925537|ref|YP_002500839.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950144|gb|ACL60536.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 124 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ER++ N R R+ LT K + + G AQ ++S++ETG+ ID + LA L+ Sbjct: 58 VERLLGGENRIRVWREHRGLTAKALAEKAGIAQPFLSQIETGRREGTIDTLRKLAQALNL 117 Query: 76 PLWKLL 81 L L+ Sbjct: 118 TLDDLV 123 >gi|54293993|ref|YP_126408.1| hypothetical protein lpl1052 [Legionella pneumophila str. Lens] gi|53753825|emb|CAH15288.1| hypothetical protein lpl1052 [Legionella pneumophila str. Lens] gi|307609819|emb|CBW99336.1| hypothetical protein LPW_11141 [Legionella pneumophila 130b] Length = 84 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ R IRKE +Q+ N + + +E G++ I I N++ + L Sbjct: 2 KKQTDLIVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGL 61 Query: 74 DTPLWKLLKP 83 D +L P Sbjct: 62 DVTPNELFPP 71 >gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407] gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 119 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R L+Q E+ + ++ +SE E G++T +ID ++ LA L Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEATPDIDKLVQLAEIFGVSLDY 61 Query: 80 LL 81 L+ Sbjct: 62 LV 63 >gi|116250392|ref|YP_766230.1| hypothetical protein RL0620 [Rhizobium leguminosarum bv. viciae 3841] gi|115255040|emb|CAK06114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 115 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 32/55 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R RK ++ KE+ ++G +Q ++SE+ETGK ++D + +A LD L + Sbjct: 60 VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDLDDV 114 >gi|54298268|ref|YP_124637.1| hypothetical protein lpp2326 [Legionella pneumophila str. Paris] gi|53752053|emb|CAH13479.1| hypothetical protein lpp2326 [Legionella pneumophila str. Paris] Length = 87 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ R IRKE +Q+ N + + +E G++ I I N++ + L Sbjct: 2 KKQTDLIVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGL 61 Query: 74 DTPLWKLLKP 83 D +L P Sbjct: 62 DVTPNELFPP 71 >gi|99081998|ref|YP_614152.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038278|gb|ABF64890.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 239 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R+ + +R A +T ++ RT A S I ++E GK + + +N++ LA Sbjct: 49 QRIRLELGRRVKGLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGYGV 108 Query: 76 PLWKLL 81 L KL+ Sbjct: 109 GLEKLI 114 >gi|229115891|ref|ZP_04245288.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-3] gi|228667553|gb|EEL22998.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-3] Length = 186 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|254512974|ref|ZP_05125040.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532973|gb|EEE35968.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 195 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R+ K + + + ++G + + IS +E G + +ID + LA L+ P+ L + Sbjct: 15 GASLKELRQSRKQSARWLAEQSGISAAMISRIENGLVSPSIDTLAALADALEVPIVSLFR 74 >gi|121593920|ref|YP_985816.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42] gi|120606000|gb|ABM41740.1| helix-turn-helix domain protein [Acidovorax sp. JS42] Length = 90 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H +D +L R R+ ++Q+E+ +R+ +S++S +E G I ++ + Sbjct: 17 HANDPVLIA---LGGAIRRSRRARGISQEELAHRSAIDRSYMSSIERGGQNPGIVSIARI 73 Query: 70 AHTLDTPLWKLL 81 A ++ + +L+ Sbjct: 74 AKAMEMSMTELM 85 >gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 116 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ LTQ+++ R + ++I ++E G+ +++++ ++ LA+ L + + LL Sbjct: 6 LGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGERSLSLETLVKLANELGSTVDYLL 65 >gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 177 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T Sbjct: 4 GNKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGT 56 >gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] Length = 194 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 18 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 76 >gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 67 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 MI + +RK +QKE+ TG +QS+ISELE G K+ +I + +A L+ + Sbjct: 1 MIPGKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKTNPSIKVIKRIAEVLEIDIC 60 Query: 79 KLL 81 +L+ Sbjct: 61 QLV 63 >gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO] gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae TMO] Length = 177 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R LTQ+E+ RT ++S+IS+LE+ K+++ +D + + L T L Sbjct: 4 GGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDL 58 >gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R +R+ LTQ + G A IS +E+ + + ++D MI +A L PL Sbjct: 4 ELFGARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLPLEA 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1] gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1] Length = 148 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +RK LTQ+E+ + + IS E+G T ++D + LA LD + Sbjct: 1 MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|110677426|ref|YP_680433.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453542|gb|ABG29747.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 215 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 10 HLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + ER R RK+ +T E+ T + +S++E G ++ ++ Sbjct: 14 QDPHGVREEREKVLEVAIGREVRAYRKQKGMTVAELSRLTDLSIGMLSKIENGNTSPSLT 73 Query: 65 NMIILAHTLDTPLWKLLK 82 + LA+ L PL K Sbjct: 74 TLQALANALSVPLTAFFK 91 >gi|119382887|ref|YP_913943.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119386082|ref|YP_917137.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372654|gb|ABL68247.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] gi|119376677|gb|ABL71441.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 78 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 37/71 (52%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + +R R N R +R+E L+Q+E+ +R ++++ LE ++ +D + LA Sbjct: 4 DSSGMRLRERVARNLRRLRQEKSLSQEELADRADINRNYVGMLEREENAATVDMLEKLAA 63 Query: 72 TLDTPLWKLLK 82 L+ +LL+ Sbjct: 64 VLEVDPVELLR 74 >gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 179 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + +R LTQ+E+ R + +IS+LE ++ +I ++ + L T L Sbjct: 1 MVIGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLTSPSIATLVDILEALGTDLKD 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12] gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12] Length = 184 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIR L KE+ ++ + S +S++E G + +++ + +A L+ PL+K Sbjct: 8 GKTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFKFF 66 >gi|170760678|ref|YP_001786283.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407667|gb|ACA56078.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 186 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ + +E N +G + S IS++E G++ ++ + ++A L+ PL+ L Sbjct: 7 GQTVLSYRRKNGMNIREFANYSGISTSLISQIERGEANPSLSVLELIAKALNVPLFTLF 65 >gi|118587192|ref|ZP_01544620.1| transcriptional regulator, MerR family [Oenococcus oeni ATCC BAA-1163] gi|118432334|gb|EAV39072.1| transcriptional regulator, MerR family [Oenococcus oeni ATCC BAA-1163] Length = 191 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++ KLT +E+ ++G + S IS++E G++ ++ + I+A+TL+ PL+ L Sbjct: 12 LGKTLLNYRQQNKLTIRELAVQSGISASLISQIERGRANPSLSVLTIIANTLNVPLYTLF 71 >gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] Length = 81 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ L+Q+ + + TG +S + +E G+ + + N++ +A L+ L +L Sbjct: 16 LLGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQL 75 Query: 81 L 81 Sbjct: 76 F 76 >gi|303231632|ref|ZP_07318355.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] gi|302513581|gb|EFL55600.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] Length = 90 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R EA +TQ ++ TG QS IS++E G ++ + +AH L Sbjct: 32 ENIVKARIEAHMTQTQLSEITGITQSDISKIENGNGNPSVKTLKKIAHAFGKKL 85 >gi|290476537|ref|YP_003469442.1| MunI regulatory protein (fragment) [Xenorhabdus bovienii SS-2004] gi|289175875|emb|CBJ82678.1| MunI regulatory protein (fragment) [Xenorhabdus bovienii SS-2004] Length = 56 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 26/47 (55%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+ ++ G +++IS +E G ++ + ++A+ L L +L Sbjct: 1 MSQEAFADKCGLDRTYISGIERGIRNPTLEIIYVIANGLQIELNELF 47 >gi|228921104|ref|ZP_04084438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229190489|ref|ZP_04317487.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228592997|gb|EEK50818.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228838550|gb|EEM83857.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 186 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|323703832|ref|ZP_08115468.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323531189|gb|EGB21092.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 70 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ LTQ ++ ++G +Q++I ELE GK ++ + LA L + KLL Sbjct: 2 KLQKYREDQGLTQAKLAEKSGVSQAYICELEQGKKQPSVFIVKKLAKALGISVSKLL 58 >gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis M50/1] Length = 179 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LTQ+E+ +R+ + +IS+LE +++ +I ++ + L T + Sbjct: 4 GKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAEFFT 63 >gi|332291138|ref|YP_004429747.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] gi|332169224|gb|AEE18479.1| transcriptional regulator, XRE family [Krokinobacter diaphorus 4H-3-7-5] Length = 490 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF R IR E L+ + TG ++S+++E+E GK D ++ L+ LD P Sbjct: 7 KLIFGLKLRQIRTEKNLSLFGLSKLTGLSKSYLNEIENGKKYPKPDKIVTLSEKLDIPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220] Length = 180 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 177 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T + + Sbjct: 4 GAKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLLDILQCLGTSVGEFF 62 >gi|300715480|ref|YP_003740283.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061316|emb|CAX58425.1| transcriptional regulator [Erwinia billingiae Eb661] Length = 182 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R A L+ E+ R G A+S +S+LE+ +I+ + L L+ P KL Sbjct: 7 VIAASLARERTRAGLSLAEVARRAGIAKSTLSQLESANGNPSIETLWALCGALNIPFAKL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|257793053|ref|YP_003186451.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479745|gb|ACV60062.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 201 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I NN R +R + E+ R+G A+ IS+LE+G + + LA L P Sbjct: 17 KIVSNNLRALRLARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSD 76 Query: 80 LLK 82 L++ Sbjct: 77 LIQ 79 >gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 204 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+ E+ R G + +S++E K+ ++ + L L+ PL LL Sbjct: 19 VGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALL 78 Query: 82 K 82 + Sbjct: 79 E 79 >gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus JCSC5402] gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 180 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++R++ LTQ+E+ RT ++ +IS+LE + +++ + L + Sbjct: 4 GKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLCSPSMETFFNILEVLGSKPKDFF 62 >gi|218281836|ref|ZP_03488175.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] gi|218217125|gb|EEC90663.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] Length = 104 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ LTQ+E+ + + +S +E G +D I +A+ LD Sbjct: 4 KAVGQRIKAAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 488 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P D+ + + R++RK+A LT ++ RTG + S +S +E + + + Sbjct: 5 PLPEDSATVDAVALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQR 64 Query: 69 LAHTLDTPLWKLLK 82 +A L P+ LL Sbjct: 65 IAEVLGVPVEDLLT 78 >gi|126733718|ref|ZP_01749465.1| putative transcriptional regulator [Roseobacter sp. CCS2] gi|126716584|gb|EBA13448.1| putative transcriptional regulator [Roseobacter sp. CCS2] Length = 75 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R E +Q+ + + G ++++S +E + I++DN+ LA + Sbjct: 10 RDVLARNLRLYRAEKGWSQERLAHEAGLNRTYLSAVERSEQNISVDNIARLASAMRVEAH 69 Query: 79 KLL 81 LL Sbjct: 70 TLL 72 >gi|20803997|emb|CAD31574.1| PUTATIVE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A] Length = 70 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R + LTQ+E+ R + ++ +E + + ++ + LA D + Sbjct: 5 EVMAINMRRLRHDQDLTQEELAARAELSMRYVGSIERARVSASVSVLGRLAKAFDVDPCE 64 Query: 80 LLKP 83 L++P Sbjct: 65 LIRP 68 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N ++ RK LTQ+++ R G ++ +++ ETG ST ++ N LA LD L L Sbjct: 1 MIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDAL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|227878168|ref|ZP_03996142.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256850532|ref|ZP_05555959.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047426|ref|ZP_06020382.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|227862199|gb|EEJ69744.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256712737|gb|EEU27731.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260572196|gb|EEX28760.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 65 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R LTQ+++ + ++ IS +E G +I+ I + LD L L P Sbjct: 5 KMKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSINLCIKICQALDKTLDDLFWP 63 >gi|19703890|ref|NP_603452.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714054|gb|AAL94751.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 199 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 40/77 (51%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K++ + + + + +NIRK KL K++ + G + S +S++E G + +++ Sbjct: 4 KKELLRKDNIKMNKEINVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLN 63 Query: 65 NMIILAHTLDTPLWKLL 81 + +A L+ PL+K Sbjct: 64 TIKSIAQVLEVPLFKFF 80 >gi|3318590|dbj|BAA31573.1| A2-5a orf21; hypothetical protein [Bacillus sp.] Length = 184 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + IRK+ KL+ +++ +G +++ I ++E G+S+ + + +A+ L L Sbjct: 7 ILARNLKAIRKKEKLSLEKVSELSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 184 Score = 57.7 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 35/59 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RKE ++Q+EI + ++ IS+ E GK+ +I++++++A+ D L L+K Sbjct: 5 RRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKTYPDINSLLLMANYFDVSLDHLIK 63 >gi|70729981|ref|YP_259721.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344280|gb|AAY91886.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 187 Score = 57.7 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R A L+Q + ++ ++ + +E G+ +++ + +A LD L++ Sbjct: 18 NVRRLRNAAGLSQSALAEKSNVSRRMLVAIEAGEKNVSLGTLDRVAEALDVAFSDLIQ 75 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 57.7 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +I+R+ ++F + +RK+ L+Q + G IS E GKS N+ + L Sbjct: 4 KSIIRKIIMFNEKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEA 63 Query: 73 LDTPL 77 LD PL Sbjct: 64 LDVPL 68 >gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 187 Score = 57.7 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR A L+ + + TG +++ + ++E G+S+ I + +A PL L Sbjct: 5 IIGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTAL 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 186 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + RK+A L+ EI R G A+S +S+LE G+ +I+ + + L+ P + Sbjct: 9 EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQ 68 Query: 80 LL 81 L+ Sbjct: 69 LI 70 >gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 207 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P R A E + R++RK T ++ + G A+S +S++E G+ + Sbjct: 6 LPPLLRVTRETGGAAAPEPLDLGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQMS 65 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 D + LA L+ + +L P Sbjct: 66 PTYDALKKLAQGLEISVPQLFTP 88 >gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 183 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 11 VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 >gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 255 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E T +++ RT + S++SE+E G ++ + LA L+ +L+K Sbjct: 5 GEQIRALREERGYTLQDLARRTNLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKAQLIK 64 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R +R E ++ +E+ +G + S++SE+E G + + +A L P Sbjct: 72 LSLGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTVYPALTTLKRIAAGLSVPPAA 131 Query: 80 LL 81 L+ Sbjct: 132 LI 133 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 A++ R +R+E LTQ ++ + G I ++E GK ++ + Sbjct: 125 LSVPPAALIGHETTLGCKLRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQPSLKTLE 184 Query: 68 ILAHTLDTPL 77 +A + Sbjct: 185 KIAEVMGVTP 194 >gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] Length = 183 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +I N R +R+E KL+ E+ +G ++S ++++E G I + +++ + P Sbjct: 3 PMNLIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVP 62 Query: 77 LWKL-LKP 83 L ++P Sbjct: 63 FDALTVRP 70 >gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 210 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+E+ ++ G ++ I+ LETG+ I++ + +A L Sbjct: 38 VGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVNISLAKLDAIAIVLGV 91 >gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 187 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + RK+A L+ EI R G A+S +S+LE G+ +I+ + + L+ P + Sbjct: 10 EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQ 69 Query: 80 LL 81 L+ Sbjct: 70 LI 71 >gi|307155287|ref|YP_003890671.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306985515|gb|ADN17396.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 82 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + L+Q+E+ R+ +++IS +E G + ++ LA L L +LL Sbjct: 12 LGSQVKRHRTKLGLSQEELGFRSNLDRTYISGVERGVRNPSFTALVSLASGLGLTLSELL 71 >gi|167749015|ref|ZP_02421142.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|317472587|ref|ZP_07931905.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] gi|167651637|gb|EDR95766.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|316899921|gb|EFV21917.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] Length = 114 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R++ +TQ+ + + + S IS +ET K+ +++ ++ +++ L + Sbjct: 6 EALGRKIKEVRRKQNMTQEYLAEKVDLSVSHISNIETAKTKVSLPTLVEISNALGVSVDY 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|315658589|ref|ZP_07911460.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|315496378|gb|EFU84702.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 179 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+R LTQ+E+ RT + +IS++E+ ++ +++ + + L T + Sbjct: 4 GMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDFFQ 63 >gi|296327461|ref|ZP_06870007.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155287|gb|EFG96058.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 205 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 40/77 (51%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K++ + + + + +NIRK KL K++ + G + S +S++E G + +++ Sbjct: 10 KKELLRKDNIKMNKEINVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLN 69 Query: 65 NMIILAHTLDTPLWKLL 81 + +A L+ PL+K Sbjct: 70 TIKSIAQVLEVPLFKFF 86 >gi|289551090|ref|YP_003471994.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] gi|289180622|gb|ADC87867.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] Length = 179 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N+R LTQ+E+ RT + +IS++E+ ++ +++ + + L T + Sbjct: 4 GMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDFFQ 63 >gi|206889754|ref|YP_002249639.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741692|gb|ACI20749.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 419 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 DE H+ + N R IR ++QKE+ + +IS++E + +I + Sbjct: 232 DEIHIKATEQTLVLDIGNKLREIRISRNISQKELAEKVNLTPGFISQMENNQIAPSIVSF 291 Query: 67 IILAHTLDTPLWKLL 81 + + L ++L Sbjct: 292 MQICDALGVKASEIL 306 >gi|302875139|ref|YP_003843772.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307690235|ref|ZP_07632681.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302577996|gb|ADL52008.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 182 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IR+E LT ++ TG ++S +SE+E + I + + ++ PL + Sbjct: 6 ETISRNIKRIRQERNLTLDDLAILTGVSKSMLSEIERCTKSPTISVLEKICDGINVPLAQ 65 Query: 80 L 80 L Sbjct: 66 L 66 >gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171] gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171] Length = 289 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRK L+Q E+ + G QS+IS +E G +ID ++I+A+ L+ PL LL+ Sbjct: 7 GKAIRRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65 >gi|227519556|ref|ZP_03949605.1| phage-like protein [Enterococcus faecalis TX0104] gi|257090840|ref|ZP_05585201.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312902475|ref|ZP_07761681.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227073005|gb|EEI10968.1| phage-like protein [Enterococcus faecalis TX0104] gi|256999652|gb|EEU86172.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310634145|gb|EFQ17428.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579716|gb|EFU91907.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 184 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + + R E K+TQ ++ ++G + + +E GK++ +I+ + +A L L Sbjct: 5 DSKVVGTRMKQKRLEKKMTQVDVATKSGISSKYYGSIENGKNSPSIEKLSAIAKALGCSL 64 Query: 78 WKLL 81 LL Sbjct: 65 HYLL 68 >gi|153008632|ref|YP_001369847.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560520|gb|ABS14018.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 96 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R IR ++Q E+ + ++++ +E GK + + LA L+ Sbjct: 10 EQLAFNLRRIRVANGISQDELALMSNVERAYVGHIERGKKNPTVITLDKLATALN 64 >gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 179 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +R+ LTQ+E+ +R ++ +IS+LE ++ +I ++ + +L T L + Sbjct: 1 MIIGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLTSPSIATLVDILESLGTNLKE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 221 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER+I R +R+ A LT E+ R+G ++ +S++E ++ ++ + LA LD P+ Sbjct: 33 ERLI-AAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLTTLARLADALDVPV 91 Query: 78 WKLLK 82 L + Sbjct: 92 TALFR 96 >gi|229144991|ref|ZP_04273387.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST24] gi|228638513|gb|EEK94947.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST24] Length = 192 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71 >gi|228958663|ref|ZP_04120381.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109833|ref|ZP_04239418.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15] gi|229127789|ref|ZP_04256776.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4] gi|229153781|ref|ZP_04281918.1| Transcriptional regulator, XRE [Bacillus cereus m1550] gi|228629684|gb|EEK86375.1| Transcriptional regulator, XRE [Bacillus cereus m1550] gi|228655667|gb|EEL11518.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4] gi|228673678|gb|EEL28937.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15] gi|228801084|gb|EEM47983.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 192 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71 >gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 245 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ A ++QK++ +S IS++E+G ++ +++ ++ + ++ L + Sbjct: 4 GPRIARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAEFF 62 >gi|126700771|ref|YP_001089668.1| putative phage DNA-binding protein [Clostridium difficile 630] gi|115252208|emb|CAJ70047.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 253 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M N + IRK+ +LTQ ++ +G +++ + E K +ID + LA L Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 57 >gi|303241950|ref|ZP_07328443.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590505|gb|EFL60260.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 64 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK+ ++Q E+ + + +ISELETGK +++ L+ L + +L Sbjct: 1 MFGEKLKQLRKQRNISQHELSKISNVSYGFISELETGKKRPSLETAEKLSRALGVAITEL 60 Query: 81 L 81 + Sbjct: 61 I 61 >gi|296122389|ref|YP_003630167.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014729|gb|ADG67968.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 82 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + R+ A ++Q+++ TG + + + ETG+ + N+ ++ LA L P Sbjct: 8 EVFSRNLKAARQRAGMSQRKLAEITGCSFASVCRWETGRESPNLTTIVKLAEGLQVPPEA 67 Query: 80 LLK 82 LL Sbjct: 68 LLT 70 >gi|229167238|ref|ZP_04294979.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228616276|gb|EEK73360.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 205 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISPSLISQIERGHANPSLNVLELIAKALNVPLFTLF 84 >gi|291296678|ref|YP_003508076.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290471637|gb|ADD29056.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 130 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R + K++ ++G + ++S+LE G++ ++D + LA + + + Sbjct: 1 MTLAERLRELRTQQGWRLKDLSEKSGLSVPYLSDLERGRTNPSLDTLQTLATSYNLSVND 60 Query: 80 LLKP 83 LL P Sbjct: 61 LLAP 64 >gi|206560876|ref|YP_002231641.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036918|emb|CAR52822.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 109 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 KR P +S + + R A+ +Q+ + +++IS +E G + +I+ Sbjct: 4 KRSSPSVSRPAPIS-IALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIE 62 Query: 65 NMIILAHTLDTPLWKLLKP 83 + + ++L+ L +L P Sbjct: 63 TLANICYSLNVTLAELFGP 81 >gi|206971652|ref|ZP_03232602.1| DNA-binding protein [Bacillus cereus AH1134] gi|228952730|ref|ZP_04114804.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069917|ref|ZP_04203198.1| Transcriptional regulator, XRE [Bacillus cereus F65185] gi|229079584|ref|ZP_04212121.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-2] gi|229178751|ref|ZP_04306115.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|206733637|gb|EDZ50809.1| DNA-binding protein [Bacillus cereus AH1134] gi|228604909|gb|EEK62366.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228703753|gb|EEL56202.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-2] gi|228713208|gb|EEL65102.1| Transcriptional regulator, XRE [Bacillus cereus F65185] gi|228807006|gb|EEM53551.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 186 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] Length = 177 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T + + Sbjct: 4 GSKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEFF 62 >gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] Length = 114 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+RK L+Q + R + +IS +E G +++ ++ +A LD P LL Sbjct: 10 GVRIHNLRKLRGLSQAALAERAELSTPYISHIERGMKLLSLPALLRIAEALDIPPGTLL 68 >gi|319652413|ref|ZP_08006529.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2] gi|317395875|gb|EFV76597.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2] Length = 185 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + R+ KL+ +++ TG +++ I ++E G+S+ I + +A+ L Sbjct: 6 LILAKNLKAFRENKKLSLEKVAELTGVSKTMIGQIERGESSPTITTIWKIANGLKISFTS 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205] gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205] Length = 224 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +N ++IRK K+TQKE+ ++G QS IS+LETG + + +++ LA+ L +L Sbjct: 8 LGDNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAK-STGSILELANALGVTAEEL 65 >gi|229085306|ref|ZP_04217548.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-44] gi|228698025|gb|EEL50768.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-44] Length = 186 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G++ ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNDMTIREFADYAGISTSLISQIERGQANPSLSVLELIAKALNVPLFTLF 65 >gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293] Length = 61 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK+ +TQ+E+ + G ++++S LE GK ++D + ++ L + + K+ K Sbjct: 2 NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 >gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 148 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +RK LTQ+E+ + + IS E+G T ++D + LA LD + Sbjct: 1 MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900] Length = 183 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ +R G ++ I+ LETG+ I++ + +A L Sbjct: 11 VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 >gi|254976735|ref|ZP_05273207.1| putative phage DNA-binding protein [Clostridium difficile QCD-66c26] gi|255094119|ref|ZP_05323597.1| putative phage DNA-binding protein [Clostridium difficile CIP 107932] gi|255315870|ref|ZP_05357453.1| putative phage DNA-binding protein [Clostridium difficile QCD-76w55] gi|255518531|ref|ZP_05386207.1| putative phage DNA-binding protein [Clostridium difficile QCD-97b34] gi|255651650|ref|ZP_05398552.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 254 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M N + IRK+ +LTQ ++ +G +++ + E K +ID + LA L Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 57 >gi|163756345|ref|ZP_02163459.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1] gi|161323697|gb|EDP95032.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1] Length = 492 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + IR + L+ + TG ++S+++E+E GK D ++IL+ LD P Sbjct: 7 KLIFGLKLKQIRTDKNLSLFGLSKITGLSKSYLNEIEKGKKYPKPDKIVILSEKLDVPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|16762390|ref|NP_458007.1| hypothetical protein STY3832 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143878|ref|NP_807220.1| hypothetical protein t3577 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25512349|pir||AD0945 probable DNA-binding protein STY3832 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504694|emb|CAD09582.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139514|gb|AAO71080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 188 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R++ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 13 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 72 Query: 81 LKP 83 L+P Sbjct: 73 LEP 75 >gi|289623964|ref|ZP_06456918.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651241|ref|ZP_06482584.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487604|ref|ZP_07005645.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157696|gb|EFH98775.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867797|gb|EGH02506.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330953968|gb|EGH54228.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] Length = 189 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVAFSDLIQ 75 >gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 190 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ ++ E+ R G ++ +S+LE G+ I+ + LA L PL LL Sbjct: 17 VGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDALAIALRIPLTDLL 76 >gi|257438372|ref|ZP_05614127.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199203|gb|EEU97487.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 119 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RK A LTQ+++ R + I+ +E G + + ++ +A L L Sbjct: 8 KVLGEKVRKERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARILPVSLDA 67 Query: 80 LLKP 83 L+ P Sbjct: 68 LITP 71 >gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187] gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187] gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus BDRD-ST26] Length = 152 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 203 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R+E LT + + R+G +++ IS++E G+ + LA L L +L Sbjct: 17 VGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGEKVPTLVVAARLAEGLGVSLSEL 75 >gi|83719403|ref|YP_440667.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] gi|83653228|gb|ABC37291.1| possible transcriptional regulator, XRE family [Burkholderia thailandensis E264] Length = 128 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + + R EA+ +Q+ + +++IS +E G + +++ Sbjct: 23 KRSPSPPGRPAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVET 82 Query: 66 MIILAHTLDTPLWKLLKP 83 + + ++L+ L +L P Sbjct: 83 LANICYSLNITLAELFAP 100 >gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L +R+ R++R + L+ + + G ++S IS +E G+S+ + LA L Sbjct: 6 PSLNDRI--AQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGESSPTAVLLEKLATGL 63 Query: 74 DTPLWKLLK 82 PL L + Sbjct: 64 GVPLASLFE 72 >gi|312961727|ref|ZP_07776225.1| transcriptional regulator, XRE family with cupin sensor domain [Pseudomonas fluorescens WH6] gi|311283986|gb|EFQ62569.1| transcriptional regulator, XRE family with cupin sensor domain [Pseudomonas fluorescens WH6] Length = 191 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R A L+Q + ++G ++ + +E G+ +++ + +A L+ L+ Sbjct: 19 VSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLSTLDRVAEALEVAFSDLI 78 Query: 82 K 82 + Sbjct: 79 Q 79 >gi|302337830|ref|YP_003803036.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301635015|gb|ADK80442.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 84 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER+I N R R LTQ + + G + ++ ++E GK + + + L L Sbjct: 6 ERLI--ANLREARYTLNLTQMGLAEKAGISIGFVGDIEAGKKFPSANTLQKLCDALQLEP 63 Query: 78 WKLLKP 83 +L P Sbjct: 64 HELFLP 69 >gi|284050068|ref|ZP_06380278.1| DNA-binding protein [Arthrospira platensis str. Paraca] gi|291566507|dbj|BAI88779.1| putative XRE family transcriptional regulator [Arthrospira platensis NIES-39] Length = 79 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R AK++Q+E+ +R G ++++S++E G + + + ++ +L+T Sbjct: 6 KALGQVLIKYRTLAKISQEELADRAGIHRTYVSQIERGLKSPTLSVLFRISQSLNTTASV 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|225569760|ref|ZP_03778785.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] gi|225161230|gb|EEG73849.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] Length = 160 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 39/66 (59%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E N ++ R++ + TQ+ + + ++ IS+ ETGK ++DN+++L++ D Sbjct: 1 MKEIKTLGENLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDV 60 Query: 76 PLWKLL 81 L +L+ Sbjct: 61 SLDELM 66 >gi|78043621|ref|YP_360682.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995736|gb|ABB14635.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 127 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ +L+++E G + ++ +LE G+ +++ ++ +A L L Sbjct: 6 KAIGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLPVLVNIAQCLHVSLDY 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|56698137|ref|YP_168509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679874|gb|AAV96540.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R A L+ ++ TG +++ + ++E G+S+ I + +A PL LL P Sbjct: 9 KLREVRAAAGLSLAKVAELTGVSKAMLGQIERGESSPTIATLWKIAKGFQMPLSALLGP 67 >gi|13990971|dbj|BAB47254.1| y4dJ [Agrobacterium tumefaciens] Length = 70 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R IR KLTQ+E+ +RTG + I +E + + + + +AH L +L+ Sbjct: 4 NLRRIRHVKKLTQEELAHRTGLSVRHIGAIERAEMSATVTVLGQIAHALSVEPAELVT 61 >gi|298209023|ref|YP_003717202.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus HTCC2559] gi|83848950|gb|EAP86819.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus HTCC2559] Length = 491 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + IR + L+ + +G ++S+++E+E GK D + IL+ LD P Sbjct: 7 KLIFGLKLKQIRTDKNLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSKKLDVPFD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK LT K++ RT + S +S++E +S+ ++ ++ +A LD P+ +L Sbjct: 137 GRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASVSSLFKVATALDVPITELF 195 >gi|78043349|ref|YP_359532.1| MerR family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995464|gb|ABB14363.1| transcriptional regulator, MerR family [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ + +R++ LT +E+ TG + S++S +E+G+ ++I + LA + L Sbjct: 94 RIAVGQKLKALREKKGLTLEEVSQGTGVSVSYLSRIESGQVNVSIATLQKLATFYEKNL 152 >gi|218897358|ref|YP_002445769.1| DNA-binding protein [Bacillus cereus G9842] gi|228901004|ref|ZP_04065216.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] gi|218542293|gb|ACK94687.1| DNA-binding protein [Bacillus cereus G9842] gi|228858635|gb|EEN03083.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] Length = 186 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] Length = 180 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R++ KL+ + + +G ++S ++++E G I + +++ + P Sbjct: 3 LIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDA 62 Query: 80 L-LKP 83 L ++P Sbjct: 63 LTVRP 67 >gi|124262737|ref|YP_001023207.1| subunit S of type I restriction-modification system [Methylibium petroleiphilum PM1] gi|124266393|ref|YP_001020397.1| subunit S of type I restriction-modification system [Methylibium petroleiphilum PM1] gi|124259168|gb|ABM94162.1| subunit S of type I restriction-modification system [Methylibium petroleiphilum PM1] gi|124261983|gb|ABM96972.1| subunit S of type I restriction-modification system [Methylibium petroleiphilum PM1] Length = 77 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R + R R L+Q+ + + ++++ +E + +++DN+ LA L+ Sbjct: 9 ESARARLARHLRGERALRGLSQEALADLALLHRTYVGSIERCERNVSLDNVERLARALNV 68 Query: 76 PLWKLL 81 + LL Sbjct: 69 DIADLL 74 >gi|313116082|ref|ZP_07801505.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621588|gb|EFQ05120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RK A LTQ+++ R + I+ +E G + + ++ +A L L Sbjct: 9 KVLGEKVRTERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARVLPVSLDA 68 Query: 80 LLKP 83 L+ P Sbjct: 69 LITP 72 >gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 135 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 S AI R + + + RKE L+QK++ GF Q ++S +E G+ ++++ ++ + Sbjct: 23 EDSLAIGRIKGQVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEENLSLETLVKI 82 Query: 70 AHTLD 74 + L Sbjct: 83 SACLK 87 >gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 182 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R +M N + IR LTQ E+ R+ + +IS++E ++ ++ +I + L T Sbjct: 1 MRYKMDIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLTSPSVTTLIDILEALGT 60 Query: 76 PLWKLLK 82 + K Sbjct: 61 SPIEFFK 67 >gi|289432135|ref|YP_003462008.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|288945855|gb|ADC73552.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 133 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F R +R+ KL+ +E+ +TG + S+I+++E GK + + LA + P+ +L Sbjct: 4 FGEYLRKLREAQKLSLREMAAKTGVSVSYITQIENGKRKAPGPEVLKKLAPAYNVPVREL 63 Query: 81 LK 82 LK Sbjct: 64 LK 65 >gi|228965379|ref|ZP_04126471.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar sotto str. T04001] gi|228794369|gb|EEM41883.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar sotto str. T04001] Length = 186 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 179 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R + LTQ+E+ +R + +IS+LE +++ ++ ++ + L + Sbjct: 4 GHRMKELRIQYGLTQQELADRAELTKGFISQLERNQNSPSVGTLLDIIQCLGMTPAEFFT 63 >gi|296840682|ref|ZP_06863200.2| transcriptional regulator, Cro/CI family [Neisseria polysaccharea ATCC 43768] gi|296840230|gb|EFH24168.1| transcriptional regulator, Cro/CI family [Neisseria polysaccharea ATCC 43768] Length = 68 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK L+Q++ + +++++ +E GK +++ NM + + L T + + Sbjct: 7 GARIRELRKAQNLSQEKFALKAEIDRTYLAGIEQGKRNLSMKNMEKIINALGTTFHQFFE 66 >gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 218 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ +Q+E+ R G ++ IS+ E +S+ + DN+I LA L +L+ Sbjct: 6 AQRLAELRRTKGYSQEELAQRLGLSRQAISKWERAESSPDTDNLIALARLYSVSLDELV 64 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N R IRK LTQ ++ R G A++ +++ E G S I + LA TL P Sbjct: 5 ENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVP 57 >gi|330810189|ref|YP_004354651.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378297|gb|AEA69647.1| putative Transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 187 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R A+L+Q + +G ++ + +E G+ +++ + +A LD L+ Sbjct: 15 VSQNVRRLRHAAELSQTALAELSGVSRRMLVAIEAGEKNVSLTTLDRVAEALDVAFSDLI 74 Query: 82 K 82 + Sbjct: 75 Q 75 >gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] Length = 180 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R++ KL+ + + +G ++S ++++E G I + +++ + P Sbjct: 3 LIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDA 62 Query: 80 L-LKP 83 L ++P Sbjct: 63 LTVRP 67 >gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] Length = 180 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R+E KL+ +E+ + ++S I+++E G+ + + +++ L P L Sbjct: 4 IVAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGNPTLSTLWKISNGLKVPFDSL 63 Query: 81 -LKP 83 ++P Sbjct: 64 TVRP 67 >gi|110677441|ref|YP_680448.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453557|gb|ABG29762.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 190 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R +RK LT ++ R G + W+S++E KS +I ++ +A L+ Sbjct: 6 PDEPQTLGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEV 65 Query: 76 PLWKLLK 82 + L + Sbjct: 66 SISMLFR 72 >gi|66046479|ref|YP_236320.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63257186|gb|AAY38282.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 189 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVAFSDLIQ 75 >gi|72161782|ref|YP_289439.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915514|gb|AAZ55416.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 481 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + F R++R+ +T E+ R G A S +S LE GK + + LA L Sbjct: 5 PSDLDLVTFGQRLRHLRRARNMTLAELGERVGRAPSQLSLLENGKREPKLSLLTALAKAL 64 Query: 74 DTPLWKLL 81 D + +LL Sbjct: 65 DVSVEELL 72 >gi|87308573|ref|ZP_01090713.1| restriction-modification system regulatory protein, putative [Blastopirellula marina DSM 3645] gi|87288665|gb|EAQ80559.1| restriction-modification system regulatory protein, putative [Blastopirellula marina DSM 3645] Length = 73 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E +Q+ + ++++ +E G+ + + N+ +A +LD + +L+ Sbjct: 11 FGERVRELRAERGYSQEAFAHICELDRTYVGGIERGERNLALRNIERIAESLDISISELM 70 Query: 82 K 82 K Sbjct: 71 K 71 >gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RKE L+Q+ + + G+ +QS I E G ++ ++ +A TL L Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVSFVDL 63 Query: 81 L 81 + Sbjct: 64 V 64 >gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 186 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 172 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 35/55 (63%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++RKE KLT KE+ +T + S++S++E GKS++ ++++ +A L+ Sbjct: 7 GVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALNVDP 61 >gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 211 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Query: 1 MPRRKRDEPHLSDAILR-----ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 M + + DA + R++R+ ++ + + G + S +S++E Sbjct: 1 MTQPPLADAVDPDAAVPGAPAEPAASVGARIRDLRQARGISARALAATLGISPSAVSQIE 60 Query: 56 TGKSTINIDNMIILAHTLDTPLWKLLKP 83 G ++ +I + L PL P Sbjct: 61 RGVMQPSVSRLIAITDALGVPLVAAFDP 88 >gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20] Length = 293 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R LTQKE+ R + IS+ E G +I+ ++ LA L TP+ + Sbjct: 3 ESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEE 62 Query: 80 LLK 82 LLK Sbjct: 63 LLK 65 >gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30] gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10] Length = 293 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R LTQKE+ R + IS+ E G +I+ ++ LA L TP+ + Sbjct: 3 ESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEE 62 Query: 80 LLK 82 LLK Sbjct: 63 LLK 65 >gi|149277242|ref|ZP_01883384.1| possible transcriptional regulator [Pedobacter sp. BAL39] gi|149232119|gb|EDM37496.1| possible transcriptional regulator [Pedobacter sp. BAL39] Length = 86 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK LTQ+ + + +Q+ S++E G S + ++ M +A L+ + +LL Sbjct: 12 VAGNIKKIRKIKSLTQEFLAAKLDISQNAYSKIELGHSKLTVERMYQIADILNVDVIQLL 71 Query: 82 KP 83 P Sbjct: 72 SP 73 >gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] Length = 124 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R +RK LTQ+ + G S IS +E G+ ++ +MI L L+ + Sbjct: 22 FILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVE 81 Query: 80 LL 81 L+ Sbjct: 82 LV 83 >gi|167851686|ref|ZP_02477194.1| possible transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|257140690|ref|ZP_05588952.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] Length = 109 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + + R EA+ +Q+ + +++IS +E G + +++ Sbjct: 4 KRSPSPPGRPAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVET 63 Query: 66 MIILAHTLDTPLWKLLKP 83 + + ++L+ L +L P Sbjct: 64 LANICYSLNITLAELFAP 81 >gi|116331586|ref|YP_801304.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125275|gb|ABJ76546.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 204 Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IR + ++ +R G +++ +S++E GKS I + +A+ L+ P + Sbjct: 22 EVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSE 81 Query: 80 LLK 82 LLK Sbjct: 82 LLK 84 >gi|307324784|ref|ZP_07603990.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889666|gb|EFN20646.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 187 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R E LT + R+G A+ ISELE G+ I+ + LA+ L+ L L Sbjct: 7 VVAGNLQRLRGERGLTLAALAARSGVAKGTISELERGRGNPTIETLFALAYALEATLADL 66 Query: 81 LK 82 ++ Sbjct: 67 VE 68 >gi|296502946|ref|YP_003664646.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296323998|gb|ADH06926.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 186 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|312114539|ref|YP_004012135.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219668|gb|ADP71036.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 206 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E L+ E+ + G ++S +S +E G +++ M LA L P+ ++L Sbjct: 27 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEALAGALGVPVTEIL 84 >gi|262377235|ref|ZP_06070460.1| helix-turn-helix domain-containing protein [Acinetobacter lwoffii SH145] gi|262307973|gb|EEY89111.1| helix-turn-helix domain-containing protein [Acinetobacter lwoffii SH145] Length = 76 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK KLTQ+++ +S++ +E G+ I ++ + +A L+ + L+ Sbjct: 8 FGLKVREQRKLKKLTQEKLALLCNIDRSYMGRIERGEVNITLEKIYEIAQALEIDILDLM 67 >gi|257469538|ref|ZP_05633630.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063782|ref|ZP_07928267.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689458|gb|EFS26293.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 185 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E L K++ + + S +S++E G + +++ + +A L+ PL+K Sbjct: 7 VGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFKFF 66 >gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 247 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R+E +Q+E+ R G ++ +S+ E +S+ + N+I LA Sbjct: 16 AQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69 >gi|116327751|ref|YP_797471.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120495|gb|ABJ78538.1| Transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 204 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IR + ++ +R G +++ +S++E GKS I + +A+ L+ P + Sbjct: 22 EVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSE 81 Query: 80 LLK 82 LLK Sbjct: 82 LLK 84 >gi|30020482|ref|NP_832113.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29896033|gb|AAP09314.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] Length = 186 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 112 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R + +TQ + G + S S +E+GK+ IN+ ++ +A LDT + Sbjct: 6 ELLGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTIDS 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|310640139|ref|YP_003944897.1| hth-type transcriptional regulator [Paenibacillus polymyxa SC2] gi|309245089|gb|ADO54656.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa SC2] Length = 184 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N +++R E KL+ ++ + TG +++ + ++E G+S +I + +A+ L Sbjct: 7 LILSKNLKHLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTA 66 Query: 80 LL 81 L+ Sbjct: 67 LI 68 >gi|257790750|ref|YP_003181356.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488538|ref|ZP_07947086.1| hypothetical protein HMPREF1023_00784 [Eggerthella sp. 1_3_56FAA] gi|257474647|gb|ACV54967.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912372|gb|EFV33933.1| hypothetical protein HMPREF1023_00784 [Eggerthella sp. 1_3_56FAA] Length = 72 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N +R A ++Q G ++ ++ ++E+GK+ +D + +A LDT + Sbjct: 7 KTQLGTNIARLRASANVSQTSFALMVGVSRKYLIDIESGKANPTVDMLERIAGGLDTTVG 66 Query: 79 KLLK 82 +L + Sbjct: 67 QLFE 70 >gi|209524129|ref|ZP_03272680.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328] gi|209495504|gb|EDZ95808.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328] Length = 79 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R AK++Q+E+ +R G ++++S++E G + + + ++ +L+T Sbjct: 6 KALGQVLIKYRTLAKISQEELADRAGIHRTYVSQIERGLKSPTLSVLFRISQSLNTTASV 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|50955531|ref|YP_062819.1| hypothetical protein Lxx19990 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952013|gb|AAT89714.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 116 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R R ++Q++I N + +E G++ + ++ LA LD Sbjct: 10 ELFGQRIRQARLAIGMSQEDIANLAAMHVTNYGRVERGEANSELHTIVRLATALDVDPAG 69 Query: 80 LLK 82 L++ Sbjct: 70 LVQ 72 >gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] Length = 180 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N R +R+E KL+ E+ +G ++S ++++E G I + +++ + P Sbjct: 3 LIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDA 62 Query: 80 L-LKP 83 L ++P Sbjct: 63 LTVRP 67 >gi|313889505|ref|ZP_07823151.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122117|gb|EFR45210.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 135 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R E +Q + ++ ++ IS+ E G ST +++N++ LA D L +L+ Sbjct: 4 FAKQLKKYRLEKNYSQDTLADQLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLV 63 Query: 82 K 82 + Sbjct: 64 R 64 >gi|78066449|ref|YP_369218.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967194|gb|ABB08574.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 93 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R E ++Q+ + TG +S + +E G+ + I N+I +A L+ KLLK Sbjct: 30 GATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKLLK 89 >gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 189 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ L+ +++ R G +S++S++E G ST ++ + LA L + +L Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLF 61 >gi|223986671|ref|ZP_03636661.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] gi|223961357|gb|EEF65879.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] Length = 124 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + LTQ+ + + G + IS +ETG + ++++ + +A+ L+ +L Sbjct: 13 LLGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELFVSIANALNVTPDEL 72 Query: 81 L 81 + Sbjct: 73 I 73 >gi|218659550|ref|ZP_03515480.1| XRE family transcriptional regulator [Rhizobium etli IE4771] Length = 73 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R IR +LTQ+E+ +RTG + I +E + + + + ++ L Sbjct: 4 KEVMATNLRRIRHGKQLTQEELAHRTGLSMRHIGAIERAEMSATVTVLGQISEALGVEPA 63 Query: 79 KLLK 82 +L+ Sbjct: 64 ELVT 67 >gi|188583928|ref|YP_001927373.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179347426|gb|ACB82838.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 124 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 8 EPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 E L A + ER++ N R R+ LT + + G AQ+++S++ETG ++ Sbjct: 49 EEELIPASVVERLVSGENRVRVWREHRGLTGAALAKQAGLAQAYLSQIETGAREGTVETY 108 Query: 67 IILAHTLDTPLWKL 80 LA L L L Sbjct: 109 SKLAAALGVSLDDL 122 >gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 184 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ RK +TQ+E+ +R G ++ +++ ETG+S+ +ID + +L L T L Sbjct: 9 RIRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLD 68 Query: 79 KLLKP 83 +L+ P Sbjct: 69 ELIVP 73 >gi|160902864|ref|YP_001568445.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360508|gb|ABX32122.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95] Length = 178 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +++R +TQ+E+ R+ + +IS++E ++ ++N+ ++ L T L Sbjct: 1 MQIGEKIKSLRIMRNMTQEELATRSDLTRGFISQVERDLASPTVENLEMILRALGTDLKD 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|296106673|ref|YP_003618373.1| hypothetical protein lpa_01638 [Legionella pneumophila 2300/99 Alcoy] gi|295648574|gb|ADG24421.1| hypothetical protein lpa_01638 [Legionella pneumophila 2300/99 Alcoy] Length = 87 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ R IRKE +Q+ N + + +E G++ I I N++ + L Sbjct: 2 KKQTDLIVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGL 61 Query: 74 DTPLWKLLKP 83 + +L P Sbjct: 62 EVTPNELFPP 71 >gi|153814290|ref|ZP_01966958.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC 27756] gi|145848686|gb|EDK25604.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC 27756] Length = 125 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R++ +Q ++ T + S+IS +E K +++++I + + L + + Sbjct: 11 KQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRIVNALGITVDE 70 Query: 80 LL 81 LL Sbjct: 71 LL 72 >gi|229017733|ref|ZP_04174622.1| Transcriptional regulator, XRE [Bacillus cereus AH1273] gi|229023949|ref|ZP_04180429.1| Transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228737327|gb|EEL87842.1| Transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228743549|gb|EEL93660.1| Transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 205 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGNANPSLNVLELIAKALNVPLFTLF 84 >gi|229044145|ref|ZP_04191828.1| Transcriptional regulator, XRE [Bacillus cereus AH676] gi|228725192|gb|EEL76466.1| Transcriptional regulator, XRE [Bacillus cereus AH676] Length = 177 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71 >gi|154502629|ref|ZP_02039689.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC 29149] gi|153796821|gb|EDN79241.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC 29149] Length = 125 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R++ +Q ++ T + S+IS +E K +++++I + + L + + Sbjct: 11 KQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRIVNALGITVDE 70 Query: 80 LL 81 LL Sbjct: 71 LL 72 >gi|311894823|dbj|BAJ27231.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 191 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R E T + R+G ++ + ++E ++ ++ ++ LA L + +LL Sbjct: 11 LARNLKRLRLERGHTLDALAARSGVSRGMVVQIEQARTNPSVGTVVRLADALGVSIARLL 70 >gi|223933458|ref|ZP_03625443.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330831854|ref|YP_004400679.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897896|gb|EEF64272.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306077|gb|AEB80493.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 121 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q E+ + ++ +S+ E G++T +ID ++ LA L L+ Sbjct: 4 LAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDYLV 63 >gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 105 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ L+ ++ G QS +S +E G+ ID +I + + LD L + Sbjct: 4 VGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGERNPTIDVIIKICNALDITLVEFF 63 >gi|167032863|ref|YP_001668094.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859351|gb|ABY97758.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 177 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R++R A ++Q + R+G ++ + +E G+ +++ + ++A L L++ Sbjct: 8 NVRSLRNAAGMSQTALAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLIQ 65 >gi|308068246|ref|YP_003869851.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305857525|gb|ADM69313.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 182 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N IRK L+ ++ TG ++ ++++E GKS + + +A+ L Sbjct: 7 IIGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGKSNPTVTTLWKIANGLHVSFSTF 66 Query: 81 LK 82 LK Sbjct: 67 LK 68 >gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] Length = 502 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + + + R+ R E LT +++ R G A S IS E+G +I + Sbjct: 21 ASAESATQGTADALSIGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVL 80 Query: 67 IILAHTLDTPLWKLLKP 83 LA LDT +LL P Sbjct: 81 TALAKALDTSAAELLDP 97 >gi|218233270|ref|YP_002367096.1| DNA-binding protein [Bacillus cereus B4264] gi|228939550|ref|ZP_04102137.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972402|ref|ZP_04133013.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979016|ref|ZP_04139380.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|218161227|gb|ACK61219.1| DNA-binding protein [Bacillus cereus B4264] gi|228780727|gb|EEM28941.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228787419|gb|EEM35387.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820120|gb|EEM66158.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940096|gb|AEA15992.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 186 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T ++ + G + S IS++E G + +++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIRDFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65 >gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 181 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+RKE LT K++ +TG + S++S++E S++ I ++ + L+ P+ K Sbjct: 6 AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYFFK 65 >gi|313680627|ref|YP_004058366.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977] gi|313153342|gb|ADR37193.1| helix-turn-helix domain protein [Oceanithermus profundus DSM 14977] Length = 130 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 FR +RKE K++ TG + ++S+LE ++ +++ + LA + L+ Sbjct: 3 LAERFRELRKERGWRLKDVAEATGLSIPYLSDLERDRTNPSLETLRTLAEAYGMSVHDLM 62 Query: 82 KP 83 P Sbjct: 63 AP 64 >gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 78 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I R RK L+ E+ N G +Q IS E G+ INI+N+ LA+ LDT + Sbjct: 7 IVGREIRKRRKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEM 63 >gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] Length = 262 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ F + +RK LTQ+++ +++ IS+ E+G+ +ID++ ++ L Sbjct: 60 AKLEFNEKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRGYPSIDSLKEISKFFTISL 119 Query: 78 WKLL 81 LL Sbjct: 120 DDLL 123 >gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 206 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++R+ R RKE LT KE+ R+G + ++IS++E GK+ +I +++ ++ L Sbjct: 19 KDRINIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALGV 77 >gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis GZ1] Length = 121 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R L+Q E+ + ++ +S+ E G++T +ID ++ LA L Sbjct: 4 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 63 Query: 80 LL 81 L+ Sbjct: 64 LV 65 >gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 75 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R+ L+Q + + +G ++S I LE G + +++LA TL Sbjct: 12 KTIGKKIKTLREAKGLSQYALSDESGISRSQIVRLENGDLNCTLATLLVLAETLGVEPKD 71 Query: 80 LL 81 LL Sbjct: 72 LL 73 >gi|52143068|ref|YP_083761.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|206973592|ref|ZP_03234510.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095997|ref|YP_002530054.1| transcriptional regulator, merr family [Bacillus cereus Q1] gi|51976537|gb|AAU18087.1| possible transcriptional regulator, MerR family [Bacillus cereus E33L] gi|206747748|gb|EDZ59137.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221240055|gb|ACM12765.1| possible transcriptional regulator, MerR family [Bacillus cereus Q1] gi|324326426|gb|ADY21686.1| putative transcriptional regulator, MerR family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 186 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|24215594|ref|NP_713075.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657038|ref|YP_001124.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196747|gb|AAN50093.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600275|gb|AAS69761.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 203 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IR + ++ +R G +++ +S++E GKS I + +A+ L+ P + Sbjct: 21 EVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSE 80 Query: 80 LLK 82 LLK Sbjct: 81 LLK 83 >gi|116688222|ref|YP_833845.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116646311|gb|ABK06952.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 109 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A +Q+ + +++IS +E G + +++ + + ++L+ L +L Sbjct: 20 LGKRIKECRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYSLNVTLGELF 79 Query: 82 KP 83 P Sbjct: 80 AP 81 >gi|330900500|gb|EGH31919.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 201 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPIEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402] Length = 93 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + +N R R++A L+Q E+ R +Q+ I+ +ETGK T ++D ++ + H L+ Sbjct: 8 QQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINP 67 Query: 78 WKLL 81 L Sbjct: 68 AVLF 71 >gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] Length = 179 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L Sbjct: 4 GEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLRDFF 62 >gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 126 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + N+R+ A L+Q+++ ++ ++ +S+ E G + +ID ++ +A L L +L+ Sbjct: 4 FQHQLANLRQAAGLSQEQLADQLHVSRQAVSKWENGSTLPDIDKIVQIADILQVSLDELV 63 >gi|237741587|ref|ZP_04572068.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|237744995|ref|ZP_04575476.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256026806|ref|ZP_05440640.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|260494772|ref|ZP_05814902.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|289764802|ref|ZP_06524180.1| transcriptional regulator [Fusobacterium sp. D11] gi|294785805|ref|ZP_06751093.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429235|gb|EEO39447.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|229432224|gb|EEO42436.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|260197934|gb|EEW95451.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|289716357|gb|EFD80369.1| transcriptional regulator [Fusobacterium sp. D11] gi|294487519|gb|EFG34881.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 185 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIRK KL K++ + G + S +S++E G + +++ + +A L+ PL+K Sbjct: 7 VGITIKNIRKAKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 66 >gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] Length = 223 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|297560394|ref|YP_003679368.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844842|gb|ADH66862.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 490 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++R+ LT ++ R G A S +S LE GK + + LA L + +LL Sbjct: 21 FGQRLRHLRRARGLTLSDLGERVGRAPSQLSLLENGKREPKLSLLTSLASALGVSVEELL 80 >gi|197104964|ref|YP_002130341.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196478384|gb|ACG77912.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 69 Score = 57.3 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R R + N R +R+ L+Q+E+ +R ++++ LE + ID + L+ L+ Sbjct: 1 MRLRGVVARNLRRLRQAKGLSQEELADRADINRNYVGLLEREEHAATIDMLEKLSEVLEV 60 Query: 76 PL 77 Sbjct: 61 EP 62 >gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84] gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7] gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14] Length = 119 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R L+Q E+ + ++ +S+ E G++T +ID ++ LA L Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 61 Query: 80 LL 81 L+ Sbjct: 62 LV 63 >gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] Length = 184 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 201 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR + D + A + ++ R +RK LT ++I G + ++S++E +S Sbjct: 1 MPRDEVDAASPAAAGNEQELLLGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSK 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + I + +A L L +P Sbjct: 61 LPIGVLKRIATILGVQLSWFFQP 83 >gi|152974571|ref|YP_001374088.1| helix-turn-helix domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023323|gb|ABS21093.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98] Length = 69 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE L+Q+ + + + I +E G+ + I+++ + + L L +L Sbjct: 7 LGERIRLLRKEQNLSQERLGELSNIHTNHIGAIERGEKNVTIESLAKITNGLGITLEELF 66 Query: 82 K 82 + Sbjct: 67 R 67 >gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 H D +L R +R++ +T ++ TG ++S +S LE+G+ +++ ++ Sbjct: 3 HHADDEVLGA---VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLP 59 Query: 69 LAHTLDTPLWKLL 81 LA D PL L+ Sbjct: 60 LARIYDVPLDDLV 72 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +RK+A ++Q+++ + G ++ +++ ETG +I+N++ ++ D + Sbjct: 3 MTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDD 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|146337900|ref|YP_001202948.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190706|emb|CAL74710.1| Conserved hypothetical protein; putative transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 76 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R IR + ++Q+++ + G ++++S +E + + ++ + A L Sbjct: 4 RQRFATNLRRIRHDRGISQEDLAHEAGVDRAYVSRIERAVTYVGLEIIGKFAEVLKVDPV 63 Query: 79 KLL 81 + Sbjct: 64 EFF 66 >gi|192291255|ref|YP_001991860.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192285004|gb|ACF01385.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 207 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N R +R + + + ++G +++ + ++ETGKS I + +A L P +L Sbjct: 25 IVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARL 84 Query: 81 L 81 + Sbjct: 85 I 85 >gi|312113826|ref|YP_004011422.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311218955|gb|ADP70323.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 199 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E L+ E+ + G ++S +S +E G +++ M LA L P+ ++L Sbjct: 20 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEALAGALGVPVTEIL 77 >gi|134299094|ref|YP_001112590.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051794|gb|ABO49765.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 69 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK+ K TQ ++ TG ++ +I+ +E G+ + + I+A L + + Sbjct: 1 MSVGKSIAKLRKQKKWTQSKLAKETGLSRGYIASIEQGRRHPALKTLTIIAEKLGVEMRE 60 Query: 80 LLK 82 L++ Sbjct: 61 LIR 63 >gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] Length = 196 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I R+ RK +LT E+ R G +QS +S++E GK+ ++D + L+ D PL Sbjct: 13 EIIGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVPL 70 >gi|262377548|ref|ZP_06070770.1| RtrR protein [Acinetobacter lwoffii SH145] gi|262307604|gb|EEY88745.1| RtrR protein [Acinetobacter lwoffii SH145] Length = 70 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RN R E K+TQ+++ +S++ +E G+ I + + +A L LL Sbjct: 9 GHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKVAPHDLL 67 >gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 185 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ L+ E+ +G +++ +S+LE+G S ID + +A L PL L Sbjct: 10 GQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSNPRIDTLESIAIALRFPLSDLFT 69 >gi|163734287|ref|ZP_02141727.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392295|gb|EDQ16624.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 190 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R +RK LT ++ R G + W+S++E KS +I ++ +A L+ Sbjct: 6 PDEPQTLGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEV 65 Query: 76 PLWKLLK 82 + L + Sbjct: 66 SISMLFR 72 >gi|30262414|ref|NP_844791.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527707|ref|YP_019056.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185259|ref|YP_028511.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118477813|ref|YP_894964.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870483|ref|ZP_02215137.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633086|ref|ZP_02391412.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639621|ref|ZP_02397891.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687038|ref|ZP_02878257.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706715|ref|ZP_02897174.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649613|ref|ZP_02932615.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565573|ref|ZP_03018493.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033861|ref|ZP_03101272.1| DNA-binding protein [Bacillus cereus W] gi|196043683|ref|ZP_03110921.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218903548|ref|YP_002451382.1| DNA-binding protein [Bacillus cereus AH820] gi|225864377|ref|YP_002749755.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227814774|ref|YP_002814783.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228927463|ref|ZP_04090518.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933732|ref|ZP_04096579.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946017|ref|ZP_04108357.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228985502|ref|ZP_04145659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229091390|ref|ZP_04222604.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42] gi|229121957|ref|ZP_04251175.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|229155991|ref|ZP_04284092.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342] gi|229184624|ref|ZP_04311825.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|229196624|ref|ZP_04323368.1| Transcriptional regulator, XRE [Bacillus cereus m1293] gi|229604374|ref|YP_002866746.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684990|ref|ZP_05148850.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722396|ref|ZP_05184184.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737437|ref|ZP_05195141.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743378|ref|ZP_05201063.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751753|ref|ZP_05203790.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760271|ref|ZP_05212295.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257045|gb|AAP26277.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502855|gb|AAT31531.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179186|gb|AAT54562.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118417038|gb|ABK85457.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] gi|164713638|gb|EDR19161.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167512330|gb|EDR87706.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531898|gb|EDR94563.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128446|gb|EDS97314.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669089|gb|EDT19833.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084687|gb|EDT69745.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563600|gb|EDV17565.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195993541|gb|EDX57498.1| DNA-binding protein [Bacillus cereus W] gi|196025992|gb|EDX64661.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218536010|gb|ACK88408.1| DNA-binding protein [Bacillus cereus AH820] gi|225787172|gb|ACO27389.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227004110|gb|ACP13853.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228586980|gb|EEK45054.1| Transcriptional regulator, XRE [Bacillus cereus m1293] gi|228598837|gb|EEK56456.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228627598|gb|EEK84324.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342] gi|228661485|gb|EEL17107.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|228691932|gb|EEL45675.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42] gi|228774267|gb|EEM22676.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228813663|gb|EEM59944.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825965|gb|EEM71751.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832182|gb|EEM77764.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229268782|gb|ACQ50419.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 186 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|154244532|ref|YP_001415490.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158617|gb|ABS65833.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 82 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 26/50 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 R +F N + R L+Q+E+ +R G +++IS LE +ID + Sbjct: 4 REVFARNLKAARLAKGLSQEELAHRAGIDRTYISSLERSVYNASIDVVDR 53 >gi|227499929|ref|ZP_03930022.1| hypothetical protein HMPREF0077_0657 [Anaerococcus tetradius ATCC 35098] gi|227218038|gb|EEI83311.1| hypothetical protein HMPREF0077_0657 [Anaerococcus tetradius ATCC 35098] Length = 308 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 ER F IR+ L Q ++ + +Q I LE G+ ++D++I L+ + Sbjct: 20 ERKEFGKKLIEIREVKGLRQADVAEISDISQRTIGRLERGEIFNPSVDSLIELSKIYNID 79 Query: 77 LWKLLK 82 + L K Sbjct: 80 ILTLYK 85 >gi|218290296|ref|ZP_03494442.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239651|gb|EED06843.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I NN R +R+ + E+ R+G A+ IS+LE+G + + LA L P Sbjct: 39 KIVSNNLRTLRQARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSD 98 Query: 80 LLK 82 L++ Sbjct: 99 LIQ 101 >gi|56698227|ref|YP_168599.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679964|gb|AAV96630.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R +RK LT EI R G + W+S++E S +I ++ +A Sbjct: 2 NTQAPSSATLGADLRALRKARGLTLSEIAARLGRSVGWLSQVERDMSEPSISDLRQIAGC 61 Query: 73 LDTPLWKLL 81 L P+ L Sbjct: 62 LGVPMSMLF 70 >gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51] gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 123 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 R IRK+ KL+ E+ +G A+S IS+LE+GK + +ID + LA L+ + L Sbjct: 4 LGKQLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVASL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|255065143|ref|ZP_05316998.1| DNA-binding protein [Neisseria sicca ATCC 29256] gi|255050564|gb|EET46028.1| DNA-binding protein [Neisseria sicca ATCC 29256] Length = 105 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMATALGVAAY 77 >gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +E+++F N +RK ++Q E+ ++ G ++ +S+ ETG+S +I+ LA Sbjct: 3 KEKIMFAENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVT 62 Query: 77 LWKLL 81 + L+ Sbjct: 63 VDDLI 67 >gi|89054805|ref|YP_510256.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864354|gb|ABD55231.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 208 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R R + + + R +RK T ++ + G A+S +S++E G+ + Sbjct: 12 RLARASGEEAVPVPVD---LAARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPT 68 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 D + LA+ L + +L P Sbjct: 69 YDALKKLANGLGISVPQLFTP 89 >gi|300691862|ref|YP_003752857.1| hypothetical protein RPSI07_2218 [Ralstonia solanacearum PSI07] gi|299078922|emb|CBM10198.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 182 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + RTG +S++S++E G S +I + LA L P L Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 >gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris] gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +RKEAKLTQ ++ ++ G Q+ E + ++ + LA D P+ +L+ Sbjct: 3 FGQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489] Length = 257 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 MIF N R++R +TQ+ + G ++ +S E G+S I+ +I L+ P+ Sbjct: 1 MIFIATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRSAPTIETLIQLSDYFKLPID 60 Query: 79 KLLK 82 L++ Sbjct: 61 VLVR 64 >gi|229161362|ref|ZP_04289347.1| Transcriptional regulator, XRE [Bacillus cereus R309803] gi|228622176|gb|EEK79017.1| Transcriptional regulator, XRE [Bacillus cereus R309803] Length = 186 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|213971279|ref|ZP_03399395.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301385049|ref|ZP_07233467.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302059128|ref|ZP_07250669.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302131456|ref|ZP_07257446.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923924|gb|EEB57503.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|330876283|gb|EGH10432.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330958714|gb|EGH58974.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] gi|330966976|gb|EGH67236.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 201 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P+ L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPNEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|194017128|ref|ZP_03055740.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC 7061] gi|194010996|gb|EDW20566.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC 7061] Length = 67 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + RKE+ L+Q++ + GF S+IS LE GK + +++ ++ + Sbjct: 7 LARMLKQKRKESGLSQEDFAEKLGFTGSYISRLENGKVSPTFKSLVQISEHVGI 60 >gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] Length = 195 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + +R+E KL+ E+ +G ++S ++++E G I + +++ + P Sbjct: 18 QIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGNPTISTLWKISNGMKVPFDA 77 Query: 80 L-LKP 83 L ++P Sbjct: 78 LTVRP 82 >gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++ LT + + TGF+ ++S ++ G +++ N+ ++ L P+ L+ Sbjct: 16 NRIAEWREKRGLTLEALAEATGFSTGYLSRMQNGSRNVSLKNLAKISEALKVPVADLV 73 >gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 190 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IRK+ L+ E TG ++ + ++E G+S + + +A L P + Sbjct: 6 EVIGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSNPTVSTLWKIATGLKVPFSE 65 Query: 80 LLK 82 +K Sbjct: 66 FMK 68 >gi|16767308|ref|NP_462923.1| hypothetical protein STM4042A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415888|ref|YP_152963.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364817|ref|YP_002144454.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207859233|ref|YP_002245884.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16422606|gb|AAL22882.1| hypothetical protein STM4042A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130145|gb|AAV79651.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096294|emb|CAR61895.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|206711036|emb|CAR35406.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249159|emb|CBG27020.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996333|gb|ACY91218.1| hypothetical protein STM14_4861 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160550|emb|CBW20080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332990871|gb|AEF09854.1| hypothetical protein STMUK_4027 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 188 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 13 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 72 Query: 81 LKP 83 L+P Sbjct: 73 LEP 75 >gi|39935673|ref|NP_947949.1| transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649526|emb|CAE28048.1| possible transcriptional regulator, XRE family, CUPIN domain [Rhodopseudomonas palustris CGA009] Length = 207 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N R +R + + + ++G +++ + ++ETGKS I + +A L P +L Sbjct: 25 IVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARL 84 Query: 81 L 81 + Sbjct: 85 I 85 >gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] Length = 122 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ+E +TGF ++IS LE G S +N+I+L + L+ + Sbjct: 18 GKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVSADAIF 76 >gi|166032956|ref|ZP_02235785.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] gi|166027313|gb|EDR46070.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] Length = 104 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ LTQ+E+ + + +S +E G +D I +A+ LD Sbjct: 4 KAVGQRIKAAREAKNLTQEELAGLVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|149926486|ref|ZP_01914747.1| predicted transcriptional regulator [Limnobacter sp. MED105] gi|149824849|gb|EDM84063.1| predicted transcriptional regulator [Limnobacter sp. MED105] Length = 68 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF + R RK L+Q E+ R +S++ +E G+ I ++ LA TL + + Sbjct: 6 KIFGSKVRAARKLRGLSQDELALRAEIDRSYMGRIERGEVRITLEKAYKLAATLGCDIKE 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536] gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11] gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a] gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536] gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11] gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional regulator [Escherichia coli ED1a] gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 60-1] Length = 194 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R +++ SD +RK LT E+ R+G +Q+ IS++E G S+ Sbjct: 1 MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 52 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + LA+ L+ L KL Sbjct: 53 PSATILSRLANALNITLSKLF 73 >gi|108759283|ref|YP_634009.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108463163|gb|ABF88348.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 170 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 30/49 (61%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 LTQ++ R G + S+ S LE G+ + + + ++ +A L PLW+LL+ Sbjct: 30 GLTQEDFAARCGISVSFASLLERGERSPSYETLLQVAAALQLPLWELLR 78 >gi|310641032|ref|YP_003945790.1| DNA-binding protein [Paenibacillus polymyxa SC2] gi|309245982|gb|ADO55549.1| DNA-binding protein [Paenibacillus polymyxa SC2] Length = 182 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N IRK L+ ++ TG ++ ++++E G+S + + +A+ L Sbjct: 7 IIGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGRSNPTVTTLWKIANGLHVSFSTF 66 Query: 81 LK 82 LK Sbjct: 67 LK 68 >gi|303229830|ref|ZP_07316610.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] gi|302515590|gb|EFL57552.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] Length = 90 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R EA +TQ ++ TG QS IS++E G ++ + +AH L Sbjct: 32 ENIVKARIEAHMTQTQLSEVTGITQSDISKIENGNGNPSLKTLRKIAHAFGKKL 85 >gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268] Length = 158 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R LTQ E R G +++ +S E G S I+ D + + ++ Sbjct: 1 MIGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSPISTDIIDRICQAFQVSYREI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|66045512|ref|YP_235353.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63256219|gb|AAY37315.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] gi|330943855|gb|EGH46095.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 201 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 57.3 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R +TQ+++ +GF+ S IS ETG++ +I+N+I L+ L+ Sbjct: 2 KKNTIGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNV 59 >gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395] gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395] gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395] gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] Length = 69 Score = 57.3 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK LTQ ++ +S++ +E G+ I ++ + +A TL + +L Sbjct: 8 LVGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVNITVEKLYQIADTLGCDVKEL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|331008014|ref|ZP_08331043.1| DNA-binding protein [gamma proteobacterium IMCC1989] gi|330418172|gb|EGG92809.1| DNA-binding protein [gamma proteobacterium IMCC1989] Length = 78 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R+ RK +Q+ + G ++++ +E G+ I+I N+I +++ LD Sbjct: 9 KAQKQLGKVIRDKRKALGYSQEAFASECGVHRTYMGAVERGERNISIMNIIRISNRLDIL 68 Query: 77 LWKLL 81 +LL Sbjct: 69 PSQLL 73 >gi|253582192|ref|ZP_04859415.1| transcription regulator [Fusobacterium varium ATCC 27725] gi|251835731|gb|EES64269.1| transcription regulator [Fusobacterium varium ATCC 27725] Length = 185 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E L K++ + + S +S++E G + +++ + +A L+ PL+K Sbjct: 7 VGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFKFF 66 >gi|207722896|ref|YP_002253330.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] gi|206588080|emb|CAQ18660.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] Length = 182 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + RTG +S++S++E G S +I + LA L P L Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 >gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 179 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T L Sbjct: 4 GAKIKELRVQKSLTQEELADRAELSKGFISQLERDITSPSIATLVDILQCLGTNLEAFFT 63 >gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 217 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E KLTQ+++ G ++ IS E KS +I ++I ++ D L LLK Sbjct: 6 GCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65 >gi|257875245|ref|ZP_05654898.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809411|gb|EEV38231.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 204 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + LTQ+E+ + + IS E +ST +ID +I L+ L Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 80 LLKP 83 LLKP Sbjct: 61 LLKP 64 >gi|257865636|ref|ZP_05645289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257871972|ref|ZP_05651625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257799570|gb|EEV28622.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806136|gb|EEV34958.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 204 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + LTQ+E+ + + IS E +ST +ID +I L+ L Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 80 LLKP 83 LLKP Sbjct: 61 LLKP 64 >gi|300704470|ref|YP_003746073.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072134|emb|CBJ43466.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 182 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + RTG +S++S++E G S +I + LA L P L Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60 >gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 192 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R RK ++ + +G +Q ++S+LE G +T ++ ++ +A LD Sbjct: 9 PEAVEVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLATPSLSSIYRIAEALDVT 68 Query: 77 LWKLLKP 83 L+P Sbjct: 69 PGTFLRP 75 >gi|78066472|ref|YP_369241.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967217|gb|ABB08597.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 191 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + M N R +R+ KLT E G ++ ++S++E G++T +I +++ +A Sbjct: 5 PDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAK 64 Query: 72 TLDTPL 77 L + Sbjct: 65 ALGVTM 70 >gi|19705366|ref|NP_602861.1| MunI regulatory protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713351|gb|AAL94160.1| MunI regulatory protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 76 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 31/54 (57%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R +++Q++ G ++++S +E GK I+++N+ ++ L + +L K Sbjct: 13 LRNGKQISQEKFALEIGMDRTYLSSVEAGKRNISLENIEKISKGLGISISELFK 66 >gi|330974510|gb|EGH74576.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 189 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSQRPPVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVAFSDLIQ 75 >gi|261365423|ref|ZP_05978306.1| DNA-binding protein [Neisseria mucosa ATCC 25996] gi|288566083|gb|EFC87643.1| DNA-binding protein [Neisseria mucosa ATCC 25996] Length = 105 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A L + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMATALGVAAY 77 >gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270] Length = 180 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +N+R LTQ+E+ R + +IS+LE G ++ +I ++ + L T + Sbjct: 4 GEKIKNLRTILGLTQEELAERAELTKGFISQLERGLTSPSISSLEDVLEALGTNISD 60 >gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 103 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ K +Q+++ G +QS +S +E G ++ + + + L+ L Sbjct: 3 VGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQPTVETLNNICNALNITLVDFF 62 >gi|262373390|ref|ZP_06066669.1| RtrR protein [Acinetobacter junii SH205] gi|262313415|gb|EEY94500.1| RtrR protein [Acinetobacter junii SH205] Length = 70 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RN R E K+TQ+++ +S++ +E G+ I + + +A L LL Sbjct: 9 GHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKVAPHDLL 67 >gi|239820588|ref|YP_002947773.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805441|gb|ACS22507.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 67 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK ++Q+E+ +R+ +S++S +E G + ++ +A L + + Sbjct: 1 MALGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAE 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|42781543|ref|NP_978790.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42737466|gb|AAS41398.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 185 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|19554107|ref|NP_602109.1| hypothetical protein NCgl2819 [Corynebacterium glutamicum ATCC 13032] gi|62391757|ref|YP_227159.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41327099|emb|CAF20943.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 127 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 D L L R RK+ +TQ ++ +G Q+ IS++E G + Sbjct: 49 EDASALITQELASRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLANPTFST 108 Query: 66 MIILAHTLD 74 + LA L Sbjct: 109 LESLASHLG 117 >gi|296127426|ref|YP_003634678.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296019242|gb|ADG72479.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 129 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK K+T E+ ++ + ++ +E G I+I N+ + L+T LL Sbjct: 11 LGQNIRELRKNKKMTIDELEEKSSLSGKYLQGVEVGNRNISIKNLNKICKALETSPDTLL 70 >gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str. Sakai] gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli O157:H7 str. EC4024] gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli O157:H7 str. FRIK2000] gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia coli O157:H7 str. FRIK966] gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str. G5101] gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str. 493-89] gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str. H 2687] gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str. LSU-61] gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. 1125] Length = 194 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R +++ SD +RK LT E+ R+G +Q+ IS++E G S+ Sbjct: 1 MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 52 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + LA+ L+ L KL Sbjct: 53 PSATILSRLANALNITLSKLF 73 >gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 186 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D I R R+ ++ E+ R G A+S +S+LE G +++ + L Sbjct: 3 PDPSPPLATI-AAALRQERQRVGISLTELARRAGIAKSTLSQLEAGLGNPSMETLWALCV 61 Query: 72 TLDTPLWKLLKP 83 LD P +L++P Sbjct: 62 ALDIPFSRLVEP 73 >gi|297623546|ref|YP_003704980.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164726|gb|ADI14437.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 187 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R T +++ R+G ++S++S LE G++ ++ + LA L Sbjct: 3 RHHLGHRLRALRLAHGYTLQQVAERSGLSRSFLSMLENGRTNVSAVRLQKLAGVFGLGLS 62 Query: 79 KLL 81 LL Sbjct: 63 DLL 65 >gi|266621149|ref|ZP_06114084.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288867198|gb|EFC99496.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 66 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q+++ R G + IS +E+G ++ I + L L +L Sbjct: 4 KRLKIARIEHDLSQEQLGERVGVTRQTISMIESGNYNPTLNLCIAICKELGKTLDELF 61 >gi|260437594|ref|ZP_05791410.1| conserved domain protein [Butyrivibrio crossotus DSM 2876] gi|292809947|gb|EFF69152.1| conserved domain protein [Butyrivibrio crossotus DSM 2876] Length = 80 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLW 78 I N R+ LTQ ++ +T +++ IS +E K+ I++D + +A+ LD P + Sbjct: 9 ILGLNIAYYRRIKGLTQLQLAEKTNVSRTHISNIEAPNKKTAISLDLLFSIAYALDIPPF 68 Query: 79 KLL 81 +LL Sbjct: 69 RLL 71 >gi|320105807|ref|YP_004181397.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924328|gb|ADV81403.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 95 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ LTQ + + G +S+IS++E G+ +I++ + ++A L +L Sbjct: 33 FGRRLRELRQSRNLTQLAMAEQFGIDRSFISDVECGRKSISLPTLEVMALGFKLSLSDIL 92 Query: 82 K 82 + Sbjct: 93 R 93 >gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 143 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTL 73 + R +R+ L+Q+ + G ++S IS LE + + + +AH L Sbjct: 15 FVLAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHAL 74 Query: 74 DTPLWKLL 81 P LL Sbjct: 75 HVPPVALL 82 >gi|91784659|ref|YP_559865.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91688613|gb|ABE31813.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 99 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 2 PRRKR-DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P R + S+ L F R R + Q E +R G ++S + ++E G+ Sbjct: 8 PGRPAGTSTYESEPALA----FGQAVRVARVAQGIAQDEFASRAGISRSHMGKIERGEHV 63 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + ++ +A L L+ Sbjct: 64 PTLPVILKIAMALRISAADLM 84 >gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] Length = 189 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE +T K++ TG + ++S LE + +DN+ + L+ L +LL Sbjct: 17 VGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDACSPTLDNLQKICGVLEISLIELL 76 >gi|126699658|ref|YP_001088555.1| putative regulatory protein [Clostridium difficile 630] gi|255101172|ref|ZP_05330149.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|115251095|emb|CAJ68926.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 120 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + +TQ+ + N S +S +ETGK+ +++ +I +A+ L + Sbjct: 6 KAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5] Length = 120 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++RK+ L+Q E+ + I E G S + D + LA LD LL Sbjct: 8 FAERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSRPSGDTLKRLADALDVSSDYLL 67 Query: 82 K 82 + Sbjct: 68 E 68 >gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 223 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|226361968|ref|YP_002779746.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240453|dbj|BAH50801.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 221 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 15/97 (15%) Query: 1 MPRRKRDEPHLS--DAILRER-------------MIFVNNFRNIRKEAKLTQKEIRNRTG 45 M R E H D ER + R +RK + L+ ++ + G Sbjct: 1 MTTRPETEVHRDTGDPAPVEREVPSDTPTGPDLEKVIARQVRALRKASGLSVGDMAAKVG 60 Query: 46 FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++ +S++E +++ ++ + LA LD P+ L + Sbjct: 61 ISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSLFR 97 >gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 211 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 MPNELL 70 >gi|224825971|ref|ZP_03699074.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224601608|gb|EEG07788.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 188 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + D + + N R R+ +Q ++ G ++ + +E G S +++ + LA Sbjct: 1 MPDTPPQVLLDVSANLRQARQALGWSQDKLATAAGVSRRMLVNIEAGDSNVSLATLDRLA 60 Query: 71 HTLDTPLWKLLKP 83 L +L++P Sbjct: 61 AALGLSFAELVRP 73 >gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 77 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + L+Q+++ G QS I +E I M LA L + + Sbjct: 1 MVGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIERENRNPTIKTMKRLATALGVSIEEF 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] Length = 105 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R RK+ + +++ +TG + S+IS +E G ++ + +A + P Sbjct: 3 VGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLP 57 >gi|138895235|ref|YP_001125688.1| PbsX family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196248177|ref|ZP_03146878.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134266748|gb|ABO66943.1| Transcriptional regulator PBSX family [Geobacillus thermodenitrificans NG80-2] gi|196211902|gb|EDY06660.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 67 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R +A LTQ+++ + G + IS +E GK + + + + L+ L ++ Sbjct: 3 NNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF 60 >gi|85713744|ref|ZP_01044734.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A] gi|85699648|gb|EAQ37515.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A] Length = 86 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + L+Q+ + G +S++ LE G ++ + LA L +L Sbjct: 6 LVAWNLRRLRVKRALSQEALAVDAGIDRSYVGRLERGVENPTVETLDKLATALQVAAAEL 65 Query: 81 L 81 L Sbjct: 66 L 66 >gi|315499432|ref|YP_004088235.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417444|gb|ADU14084.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 93 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +RK+A+L+Q+E+ R AQ++IS LE GK + ++A L + + Sbjct: 6 LIGWNVSRLRKKAELSQEELALRVEVVAQTYISNLEAGKCNPTAVTLYLIARALSVNVSE 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|271962334|ref|YP_003336530.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505509|gb|ACZ83787.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R L+ +E+ TG +++ IS++E G + ++ + LA +L+ Sbjct: 22 RGAIAANLRRARLGRGLSVRELAELTGVSKALISQVERGVANPTVEVLSRLATSLELTFG 81 Query: 79 KLLK 82 +L + Sbjct: 82 ELTR 85 >gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis JCM 11548] Length = 528 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 6/69 (8%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD---- 74 + +R+E L+ E+ R G ++S + E+E G+ ++ + +A+ L+ Sbjct: 6 KRSVGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRVAPSVTTLWKIANALEVGFG 65 Query: 75 --TPLWKLL 81 P W L+ Sbjct: 66 ALVPEWVLV 74 >gi|328543331|ref|YP_004303440.1| transcriptional regulator, XRE family [polymorphum gilvum SL003B-26A1] gi|326413077|gb|ADZ70140.1| Transcriptional regulator, XRE family [Polymorphum gilvum SL003B-26A1] Length = 61 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + RKE L+Q+ + T +++IS +E G ++ ++ LA L T LL P Sbjct: 1 MKAARKELDLSQEALALETEIDRTYISGIERGLRNPSLTLIVKLATALKTTPAALLNP 58 >gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 285 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R+E LTQ+E+ G + IS E G + + +I +A + L Sbjct: 1 MFPYRLKELREEKGLTQEELALMLGLKRQSISNYENGGRQPDYNTLIKIADFFGVTVDYL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|301053933|ref|YP_003792144.1| putative MerR family transcriptional regulator [Bacillus anthracis CI] gi|300376102|gb|ADK05006.1| possible transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 186 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65 >gi|86607899|ref|YP_476661.1| transcriptional regulator PatB [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556441|gb|ABD01398.1| transcriptional regulator PatB [Synechococcus sp. JA-2-3B'a(2-13)] Length = 550 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + + + R++ ++Q+E+ R G +QSW+ ++E G+ I++++ Sbjct: 477 PENPKDFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQR 536 Query: 69 LAHTL 73 L L Sbjct: 537 LIKAL 541 >gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] Length = 67 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R+E L Q ++ + G +Q+ ++ LETGK ++ +A LD L Sbjct: 2 MTIGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETGKRNPGFTTIVKIAKVLDLNLED 61 Query: 80 L 80 L Sbjct: 62 L 62 >gi|262197947|ref|YP_003269156.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081294|gb|ACY17263.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 187 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + +R+ ++Q +I G + S LE G + ++ A L L +L+ Sbjct: 13 LAHNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGNPTLSVLLRAAAALQVSLEELV 72 Query: 82 KP 83 P Sbjct: 73 AP 74 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 56.9 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R ++ ++ +E+ R+G S +S++E +I + +A LD P++K Sbjct: 6 LGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMFKFF 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|257486009|ref|ZP_05640050.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625938|ref|ZP_06458892.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646848|ref|ZP_06478191.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|320323588|gb|EFW79672.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328221|gb|EFW84225.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330868810|gb|EGH03519.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986067|gb|EGH84170.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010372|gb|EGH90428.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 201 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|330974504|gb|EGH74570.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 199 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 PTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSR 61 Query: 69 LAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 LCDVLGMPMSKLF 74 >gi|83589153|ref|YP_429162.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572067|gb|ABC18619.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 74 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR L+Q ++ ++G AQS+I ++E+G + + + LA L+ P Sbjct: 10 LKQIRASKNLSQYQLSKKSGVAQSYIHDIESGAKSPTLRTLEKLAAALEVP 60 >gi|284029961|ref|YP_003379892.1| SARP family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809254|gb|ADB31093.1| transcriptional regulator, SARP family [Kribbella flavida DSM 17836] Length = 1081 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-S 59 MP R ++ P + + R F R R++A +TQ+ + +R G + I +LE G+ Sbjct: 1 MPGRSQEAPSGAGHVRTGR--FGELLRAFRRQAGITQRALADRAGLSAGAIRDLEQGRTR 58 Query: 60 TINIDNMIILAHTLD 74 + D++ LA L Sbjct: 59 SPKADSVQALATALG 73 >gi|159044420|ref|YP_001533214.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912180|gb|ABV93613.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 215 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R RD P + R R+E T E+ TG + +S++E G+++ Sbjct: 11 PHRLRDAP--DKTLEAA---IGRALRAFRREQGTTVVELSAATGLSTGMLSKIENGQTSP 65 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + LA+ L PL + Sbjct: 66 SLTTLQALANALSVPLTAFFR 86 >gi|331014513|gb|EGH94569.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 201 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P+ L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPNEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +ETG+ + +D ++ LA LDT L +L Sbjct: 15 LVRRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRRRLALDQLVTLARALDTSLDQL 74 Query: 81 LK 82 ++ Sbjct: 75 VE 76 >gi|213426090|ref|ZP_03358840.1| hypothetical protein SentesTyphi_10843 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582495|ref|ZP_03364321.1| hypothetical protein SentesTyph_15373 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612462|ref|ZP_03370288.1| hypothetical protein SentesTyp_08142 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647358|ref|ZP_03377411.1| hypothetical protein SentesTy_08670 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857431|ref|ZP_03384402.1| hypothetical protein SentesT_19934 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 182 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R++ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|213160859|ref|ZP_03346569.1| hypothetical protein Salmoneentericaenterica_12733 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 181 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R++ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 6 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 65 Query: 81 LKP 83 L+P Sbjct: 66 LEP 68 >gi|163760476|ref|ZP_02167558.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43] gi|162282427|gb|EDQ32716.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43] Length = 116 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R + E ++ E M + R RK +T E+ G +Q +S++E GK Sbjct: 35 MERVRAGEETWPSELVHELMETDSRIRTYRKYRGMTGSELAAAAGISQPHLSDIENGKKA 94 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++D + +A L L L+ Sbjct: 95 GSVDVLKRIATALRVDLDDLV 115 >gi|153011646|ref|YP_001372860.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563534|gb|ABS17031.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 88 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R N R IR +TQ+ + ++ IS +ETG ID + LA L + Sbjct: 3 ARTRIAWNLRQIRSSQGITQENLAVDANVDRTAISGIETGDYNPTIDLLERLAEALSVDI 62 Query: 78 WKLL 81 L+ Sbjct: 63 VDLV 66 >gi|111019821|ref|YP_702793.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819351|gb|ABG94635.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 221 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 15/97 (15%) Query: 1 MPRRKRDEPHLS--DAILRER-------------MIFVNNFRNIRKEAKLTQKEIRNRTG 45 M R E H D ER + R++RK + L+ ++ + G Sbjct: 1 MTTRPETEVHRDTGDPAPVEREVPSDTPTGPDLEKVIARQVRSLRKASGLSVGDMAAKVG 60 Query: 46 FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++ +S++E +++ ++ + LA LD P+ L + Sbjct: 61 ISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSLFR 97 >gi|237727408|ref|ZP_04557889.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229434264|gb|EEO44341.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 77 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+A +TQ ++ + G +S+IS +ETGK+ + +A L Sbjct: 17 GQIIEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68 >gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101] gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101] Length = 179 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L + Sbjct: 4 GDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTEFF 62 >gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13] gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 179 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L + Sbjct: 4 GDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTEFF 62 >gi|332521196|ref|ZP_08397654.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332043289|gb|EGI79486.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 491 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + IR + L+ + +G ++S+++E+E GK D + IL+ LD P Sbjct: 7 KLIFGLKLKQIRTDKDLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSERLDVPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++RK+ L+QKE+ + G + S++S++E +S + D + L L+ Sbjct: 10 GGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSNPSFDKLQRLCVVLNVQP 64 >gi|255307046|ref|ZP_05351217.1| putative regulatory protein [Clostridium difficile ATCC 43255] Length = 120 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + +TQ+ + N S +S +ETGK+ +++ +I +A+ L + Sbjct: 6 KAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|269798806|ref|YP_003312706.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095435|gb|ACZ25426.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 90 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ K++ L D + N R A +TQ ++ TG QS IS++E G Sbjct: 15 PKFKKEWDALDDEYQ-----IIQNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGNP 69 Query: 62 NIDNMIILAHTLDTPL 77 ++ + +AH L Sbjct: 70 SLKTLQKIAHAFGKKL 85 >gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 209 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK K+TQK++ NRTG + S +S++E G+ +++ + L+ +L+ L L Sbjct: 138 VGKKLKFLRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLSASLNVKLSYFL 197 Query: 82 K 82 + Sbjct: 198 E 198 >gi|91217908|ref|ZP_01254861.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC 700755] gi|91183885|gb|EAS70275.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC 700755] Length = 492 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + IR E KL+ + +G ++S+++E+E GK D + L+ L+ P Sbjct: 7 KLIFGLKLKQIRTEKKLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIATLSEKLEVPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|328950250|ref|YP_004367585.1| helix-turn-helix domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450574|gb|AEB11475.1| helix-turn-helix domain protein [Marinithermus hydrothermalis DSM 14884] Length = 130 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +RK+ K++ +G + ++S+LE G++ +++ + L+ + Sbjct: 1 MTLAERLRELRKDRGWRLKDLSQASGLSIPYLSDLERGRTNPSLETLQTLSRAYGISVHD 60 Query: 80 LLKP 83 LL P Sbjct: 61 LLAP 64 >gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 476 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+A LT ++ RTG + S +S +E + + + +A L P+ LL Sbjct: 6 LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVEDLL 65 Query: 82 K 82 Sbjct: 66 T 66 >gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 209 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ ++ G ++ I+ LETG+ I++ + +A L Sbjct: 37 VGTNIRSLRDERGLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLSV 90 >gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 206 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP K D + D + R + +R+ ++T ++ + TG + S +S LE G Sbjct: 1 MPNGKLDG--MDDTVERTLDAVGPRLKQLRQRREITLADLADETGISTSTLSRLEAGLRR 58 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ ++ LA L +L+ Sbjct: 59 PTLEQLLPLARAYGVSLDELV 79 >gi|284034787|ref|YP_003384718.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283814080|gb|ADB35919.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 119 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N FR +R+E +T +E+ + ++SE+E G+ + + + + LD L Sbjct: 4 RQVIGNVFRRLRRERGITLRELAELAQVSVPYLSEIERGRKEPSSEILAAICRALDLELS 63 Query: 79 KLL 81 LL Sbjct: 64 DLL 66 >gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 200 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK LTQ+++ +++ +S+ E+G+ +ID++ ++ + +L+ Sbjct: 3 FGEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRGYPSIDSLKEVSRFFSVTIDELI 62 Query: 82 KP 83 P Sbjct: 63 SP 64 >gi|154500601|ref|ZP_02038639.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] gi|150270490|gb|EDM97799.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] Length = 75 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N RKE L+Q + R +++ +S +ET +++D + + L+ P K Sbjct: 10 KYLGLNIAYYRKERGLSQSRLAERINVSRTHMSRIETADCAVSLDVVFAICDALEVPPEK 69 Query: 80 LL 81 L Sbjct: 70 LF 71 >gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 177 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T + + Sbjct: 4 GAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEFF 62 >gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] Length = 177 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R ++ +IS+LE ++ +I ++ + L T + + Sbjct: 4 GAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEFF 62 >gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] Length = 183 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ ++ G ++ I+ LETG+ I++ + +A L Sbjct: 11 VGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 >gi|229196651|ref|ZP_04323395.1| hypothetical protein bcere0001_22090 [Bacillus cereus m1293] gi|228587007|gb|EEK45081.1| hypothetical protein bcere0001_22090 [Bacillus cereus m1293] Length = 185 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 110 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE L+Q+ + G ++ +++ E+ KS +D ++ L++ + KLL Sbjct: 6 FNEKLQGLRKEKGLSQEGLAELVGVSRQSVAKWESKKSYPEVDKLVQLSNVFGVSIDKLL 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|226952353|ref|ZP_03822817.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226836905|gb|EEH69288.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 72 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN R E K+TQ+ + + G +S++ +E G+ I ++ + +A L +LL Sbjct: 9 GQLIRNKRLELKITQESLALQCGIDRSYVGRIERGEVNITVEKLYEIAEILKINPQELL 67 >gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 114 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF + +RK LTQ E+ +QS I ETG+ +I+ + +A + L L Sbjct: 3 IFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVL 62 Query: 81 L 81 + Sbjct: 63 V 63 >gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] Length = 181 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +M + +R E +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L Sbjct: 2 KMEIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLK 61 Query: 79 KLL 81 + Sbjct: 62 EFF 64 >gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 208 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+ E+ R+G ++ +S LE+G ++ + L L PL L Sbjct: 15 VGLRLRELRVARGLSLSELARRSGVGKATLSGLESGTRNPTLETLYALTTALGLPLSAAL 74 Query: 82 K 82 + Sbjct: 75 Q 75 >gi|91975357|ref|YP_568016.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681813|gb|ABE38115.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisB5] Length = 317 Score = 56.9 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +++K + +G ++ +I++LE+GK ++I + ++ L TPL LL Sbjct: 27 LGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLEDLL 86 >gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 180 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +N+R LTQ+E+ RT + +IS+LE S+ +I + + L + Sbjct: 4 GKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIVTLFDILEVLGSSP 58 >gi|333028514|ref|ZP_08456578.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] gi|332748366|gb|EGJ78807.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] Length = 212 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR +R P A L N R+ R E T + R G ++ I ++E ++ Sbjct: 12 PRWRRWRPVADLAALT--RTLARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNP 69 Query: 62 NIDNMIILAHTLDTPLWKLL 81 ++ ++ +A L + LL Sbjct: 70 SLGTVVKVADALGVSIPTLL 89 >gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 192 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA+ LDT L +L Sbjct: 11 LVRKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQLVTLANALDTTLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 179 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + F N + +R+E L+QK+ G + IS E+G + +ID + +A T Sbjct: 10 TAKNNFATNLKELRQEHSLSQKDFGASIGISAMAISSYESGTKSPSIDTVCRIAETYHVS 69 Query: 77 LWKL 80 + L Sbjct: 70 IDWL 73 >gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 121 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ IF R+ RKE +LTQ+E+ +++G A I ++E G+ + + +L L Sbjct: 2 PEDKFIFLGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKNPTYETLCLLVDRLG 61 Query: 75 TP 76 Sbjct: 62 IS 63 >gi|229818666|ref|YP_002880192.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564579|gb|ACQ78430.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 201 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 37/74 (50%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E + + + R++R++ LT +++ +TG + + +S++E G++ +I ++ Sbjct: 11 EHVHRNETSPGGHVLGDRLRDLRRQHGLTLRDVAGQTGLSVALLSQIENGRTDPSITSLR 70 Query: 68 ILAHTLDTPLWKLL 81 LA D + L Sbjct: 71 KLARAFDAEVATLF 84 >gi|256419691|ref|YP_003120344.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256034599|gb|ACU58143.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 74 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 31/53 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ ++Q+E+ G ++++ +E G+ + I N+I LA +L+T LL+ Sbjct: 19 RQALGMSQEELALEAGLDRTYVGGIERGERNVAILNLIKLAKSLNTTPSTLLE 71 >gi|139438088|ref|ZP_01771641.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC 25986] gi|133776285|gb|EBA40105.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC 25986] Length = 275 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +R+ LTQ+++ + + +S E G+ T ID M ++A PL Sbjct: 1 MAFAEKLIAVRRAHHLTQEQLATKLFVTRQAVSRWERGEVTPGIDMMKLIAAVTGEPLPH 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE + +E+ S +S++E G + +I + +LA LD P Sbjct: 33 ENIDIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKVLAKALDVPT 92 Query: 78 WKLL 81 + L Sbjct: 93 FSFL 96 >gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +RK +L+Q+++ + G IS +E GKS ++D + +A L Sbjct: 2 QTAKQLLGLRIREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQV 61 Query: 76 PLWKLL 81 + L Sbjct: 62 EIKDLF 67 >gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 129 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R R E L Q+++ + G S IS E G + DN+ LA +LD L Sbjct: 22 LFGRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGARKPSFDNLRNLAKSLDVTTDYL 81 Query: 81 L 81 L Sbjct: 82 L 82 >gi|90020360|ref|YP_526187.1| ribulose-phosphate 3-epimerase [Saccharophagus degradans 2-40] gi|89949960|gb|ABD79975.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 81 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 8 EPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + E+++ N + +R + KL+Q+++ F ++IS +E + + I Sbjct: 3 TKNDDKRKPSEQILSVLAKNVKTLRVKRKLSQEQLGELCDFHPTFISMMERKQRNVTIST 62 Query: 66 MIILAHTLDTPLWKLL 81 + I+A L+ ++LL Sbjct: 63 LEIVARALEVEAFQLL 78 >gi|323463421|gb|ADX75574.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 182 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R+ +L+ +I TG +++ IS++E G + +I+ + +A+ L PL L Sbjct: 7 VVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPLTSL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|319893529|ref|YP_004150404.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03] gi|317163225|gb|ADV06768.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03] Length = 182 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R+ +L+ +I TG +++ IS++E G + +I+ + +A+ L PL L Sbjct: 7 VVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPLTSL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] Length = 181 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 34/57 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +RKE KLT K+I ++T + S++S++E KS+I ++++ ++ L Sbjct: 4 LIGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESLKKISEALGVNP 60 >gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 255 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R+E T +++ R + S++SE+E G ++ + LA L+ +L++ Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVSKTQLVE 64 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR E L+ +E+ ++ G + S++SE+E G ++ + +A L P L+ Sbjct: 74 LGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVPATALM 133 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++R+E LTQ ++ N G I ++E GK ++ + L+ + Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSP 194 >gi|325528329|gb|EGD05485.1| putative DNA-binding protein [Burkholderia sp. TJI49] Length = 109 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 KR P + + + R A+ +Q+ + +++IS +E G + +I+ Sbjct: 4 KRSIPSATRPAPIS-IALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIE 62 Query: 65 NMIILAHTLDTPLWKLLKP 83 + + ++L+ L +L P Sbjct: 63 TLANICYSLNVTLAELFAP 81 >gi|298487379|ref|ZP_07005426.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158064|gb|EFH99137.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 201 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 199 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK LT +E+ R +S++S+LE G S+ I ++ LA LD + +L+ Sbjct: 17 AERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLAEALDVTVDQLI 75 >gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 80 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK+ L+Q+++ G S++ +E G + ++ + +A L + L+ Sbjct: 16 LGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNASVLALHYIAEALGMTMTALM 75 Query: 82 K 82 Sbjct: 76 T 76 >gi|299537075|ref|ZP_07050378.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298727316|gb|EFI67888.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 183 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK +++ +E+ + ++ + ++E G++ ++ + + L+ PL LL Sbjct: 12 VGGNLREIRKSKRMSLEELAKVSNVSKLTLGKIERGETNPTVNILWKICRGLNIPLVALL 71 >gi|153930626|ref|YP_001393241.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP 31758] gi|152958170|gb|ABS45633.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP 31758] Length = 122 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N I +E +T+ E+ +G + S++S+L GK+ ++ M +A LDTPL Sbjct: 4 LILFTNILRILEERGMTKSELHEVSGVSISFLSDLTNGKANPSLKVMEAIADALDTPLPI 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLE 66 >gi|329848110|ref|ZP_08263138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843173|gb|EGF92742.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 261 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + ++ R +++Q ++ G +Q +S +ETG+S + D +I LA LD PL + Sbjct: 5 FGEHLKHWRARRRISQLDLALDAGISQKHLSFVETGRSVPSRDMVIRLAEVLDMPLRE 62 >gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 178 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 5 KRDEPHLSDAILRER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + A+ RE + + R++R L+Q+++ R G +++IS++E GK+ Sbjct: 47 PVTLAVVPTALPREDSGLQVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKAMPT 106 Query: 63 IDNMIILAHTLDTPLWKLLK 82 I ++ LA L + LL+ Sbjct: 107 IGSLERLARALQVDISDLLR 126 >gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 181 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RK L+ +E+ S +S++E G + +I + ILA LD P Sbjct: 2 ENIDIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKILAKCLDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|300770604|ref|ZP_07080483.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300763080|gb|EFK59897.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 96 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+ K++Q+ + + +Q+ S++E G++ + +D + +AH +++LL Sbjct: 4 GEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISVYELLP 63 Query: 83 P 83 P Sbjct: 64 P 64 >gi|229173113|ref|ZP_04300664.1| Transcriptional regulator, XRE [Bacillus cereus MM3] gi|228610446|gb|EEK67717.1| Transcriptional regulator, XRE [Bacillus cereus MM3] Length = 186 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65 >gi|227539099|ref|ZP_03969148.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium spiritivorum ATCC 33300] gi|227241049|gb|EEI91064.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium spiritivorum ATCC 33300] Length = 96 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+ K++Q+ + + +Q+ S++E G++ + +D + +AH +++LL Sbjct: 4 GEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISVYELLP 63 Query: 83 P 83 P Sbjct: 64 P 64 >gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437] Length = 184 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R E T K + RTG + S++S++E G S++ I ++ +A L P+ + + Sbjct: 11 QEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSSSLAITSLKKIADALGVPITRFFE 69 >gi|159044104|ref|YP_001532898.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911864|gb|ABV93297.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 208 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R D I E + + R++RK T ++ + G A+S +S++E G+ + Sbjct: 8 PSLIRLHRESGDTIPVEPLNLGSRVRDLRKARNWTLEQAAGQAGLARSTLSKIENGQMSP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 + + LA L+ + +L P Sbjct: 68 TYEALKKLADGLEITIPQLFTP 89 >gi|71736183|ref|YP_275333.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556736|gb|AAZ35947.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 189 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R A L+Q + ++G ++ + +E G+ +++ + +A L+ L+ Sbjct: 15 VSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLI 74 Query: 82 K 82 + Sbjct: 75 Q 75 >gi|291537143|emb|CBL10255.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 86 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTL 73 +E + N RK ++Q ++ G +++ +S +E ++++++ ++ +A L Sbjct: 6 EQEFKMIGLNIAYFRKLKGISQMKLAETIGISRTHMSNIEAPNMPTSVSLETLMDIADAL 65 Query: 74 DTPLWKLL 81 D P + LL Sbjct: 66 DIPAYVLL 73 >gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 81 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 31/64 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +RK ++Q+E+ +R+ +S++S +E G + ++ +A L Sbjct: 12 PALLALGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQNPGVMTVVQIAAGLGVS 71 Query: 77 LWKL 80 + +L Sbjct: 72 VAEL 75 >gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SSC/2] gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] Length = 223 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4] gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4] Length = 226 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R R A L+ E+ R G A+S +S+LE+G +++ + L LD P +L Sbjct: 51 IIAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGNPSVETLWALGVALDVPFSRL 110 Query: 81 LKP 83 ++P Sbjct: 111 VEP 113 >gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11] gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11] Length = 189 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R +RK LT ++ R G + W+S++E KS +I ++ +A LD P Sbjct: 6 PQPATLGADLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIAKCLDVP 65 Query: 77 LWKLL 81 + L Sbjct: 66 MSMLF 70 >gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] Length = 293 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R LTQKE+ R + IS+ E G +I+ ++ LA L TP+ + Sbjct: 3 ETLSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEE 62 Query: 80 LLK 82 LLK Sbjct: 63 LLK 65 >gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 198 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R L++ E+ + R +R+E L+ ++ G +Q IS++E G + ++ Sbjct: 3 RTASNAPLAEERPLEKAL-GYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSL 61 Query: 64 DNMIILAHTLDTPLWKLLK 82 ++ +A L+ P+ L Sbjct: 62 ASINAIASALNVPITGLFT 80 >gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] Length = 114 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF + +RK LTQ E+ +QS I ETG+ +I+ + +A + L L Sbjct: 3 IFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVL 62 Query: 81 L 81 + Sbjct: 63 V 63 >gi|158314482|ref|YP_001506990.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158109887|gb|ABW12084.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 80 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R E +Q+++ + +G +++ ++E G+ I++ N++ LA L+ +L+ Sbjct: 13 FRERVRARRHELGKSQEQLADDSGLHWTFVGQVERGRRNISLHNILKLAGALEIDPAELV 72 Query: 82 K 82 + Sbjct: 73 R 73 >gi|302186628|ref|ZP_07263301.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 189 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R +R A L+Q + ++G ++ + +E G+ +++ + +A L Sbjct: 9 PPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALQV 68 Query: 76 PLWKLLK 82 L++ Sbjct: 69 AFSDLIQ 75 >gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R+G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] Length = 214 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 36/64 (56%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R ++ + R +RK+ LT +++ +R G + ++S+LE K+ ++ ++ LA L + Sbjct: 25 DRPVYGSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVLQVDI 84 Query: 78 WKLL 81 + Sbjct: 85 DHFI 88 >gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 159 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N + +RK +LTQ E+ N G +++ +S E G S I+ + + + TL+ Sbjct: 1 MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|332827315|gb|EGK00080.1| hypothetical protein HMPREF9455_03604 [Dysgonomonas gadei ATCC BAA-286] Length = 72 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 37/59 (62%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+E K++Q E+ R + +S +S +E+GK+ + I ++ +A +LDT + ++ Sbjct: 11 GKNIKKIREEKKISQAELAARCNYEKSNMSRIESGKTNLTIGTLLNIAESLDTTIIHIV 69 >gi|320327981|gb|EFW83986.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330875480|gb|EGH09629.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 189 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R A L+Q + ++G ++ + +E G+ +++ + +A L+ L+ Sbjct: 15 VSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLI 74 Query: 82 K 82 + Sbjct: 75 Q 75 >gi|299143941|ref|ZP_07037021.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518426|gb|EFI42165.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 178 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R + LTQ+E+ +R+ + +IS++E ++ ++ +I + L T + + Sbjct: 4 GNKLKNLRVKQALTQEELADRSELTKGFISQVERNLTSPSVATLIDILEALGTTPLEFFE 63 >gi|221195296|ref|ZP_03568352.1| transcriptional regulator [Atopobium rimae ATCC 49626] gi|221185199|gb|EEE17590.1| transcriptional regulator [Atopobium rimae ATCC 49626] Length = 142 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N +RK +Q+E+ + G ++ +S+ ETG+S +I+ LA+ + Sbjct: 1 MSFAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKHLANVFGVTIDD 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|94984444|ref|YP_603808.1| XRE family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554725|gb|ABF44639.1| transcriptional regulator, XRE family [Deinococcus geothermalis DSM 11300] Length = 140 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +M R +R E L K++ G + ++S+LE G++ +++ + LA + Sbjct: 11 KMKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLETLQTLAGAYSITVH 70 Query: 79 KLLK 82 LL+ Sbjct: 71 DLLE 74 >gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP R R +R ++ + G + +SELE+G+ Sbjct: 1 MPSTGRRSAED------RRTAIGARITELRTARSMSLSALARAAGIGKGSLSELESGQRN 54 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ID + +A L PL LL Sbjct: 55 PTIDTLYAVAGPLGVPLSALL 75 >gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 359 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +RKE ++Q + R G IS+ E+G + + +++I L+ L P Sbjct: 1 MTISERINKLRKERNMSQALLAERAGLKAPAISQYESGARSPSFESLIKLSSALGVPSDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 200 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R E ++ E+ R+G A+ +S+LE+G I+ + L++ L P+ L Sbjct: 13 VLGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSAL 72 Query: 81 L 81 L Sbjct: 73 L 73 >gi|257484651|ref|ZP_05638692.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323844|gb|EFW79928.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|330888838|gb|EGH21499.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330986306|gb|EGH84409.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011269|gb|EGH91325.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 189 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R A L+Q + ++G ++ + +E G+ +++ + +A L+ L+ Sbjct: 15 VSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLI 74 Query: 82 K 82 + Sbjct: 75 Q 75 >gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 37/67 (55%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +++ ++ + R+E+ LTQKE+ ++ ++ +S E GKS +++ ++ LA+ Sbjct: 46 VMKRKIAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYG 105 Query: 75 TPLWKLL 81 L L+ Sbjct: 106 VSLDYLM 112 >gi|225175746|ref|ZP_03729739.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168670|gb|EEG77471.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1] Length = 406 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + + N R +R+E L+Q E+ + G ++ +E+G S + + +A + Sbjct: 22 VVKMDHKMISINLRRVREEKGLSQSEVAHLAGISRVAYGRIESGASIPKVSTLQNIADGI 81 Query: 74 DTPLWKLLKP 83 D L L P Sbjct: 82 DIKLQDLFVP 91 >gi|91206191|ref|YP_538546.1| Phage-related transcriptional regulator [Rickettsia bellii RML369-C] gi|157827799|ref|YP_001496863.1| Phage-related transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069735|gb|ABE05457.1| Phage-related transcriptional regulator [Rickettsia bellii RML369-C] gi|157803103|gb|ABV79826.1| Phage-related transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 120 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 16 LRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L ++++ N + R+ L+Q+++ + G + +IS +E G T ID + L+ L+ Sbjct: 55 LVQKILSGENPIKVYREYRGLSQEQLATKIGKTKQYISAIEKGSRTGTIDTLKKLSTVLN 114 Query: 75 TPLWKL 80 L L Sbjct: 115 IDLDML 120 >gi|159899272|ref|YP_001545519.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892311|gb|ABX05391.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 81 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +++R ++Q+E+ + + +++IS+LE G + + LAH L + + Sbjct: 5 FAVVLKDLRVSLGISQEELGFKANYHRTYISQLERGLKIPTLTTVFELAHVLKITPAEFI 64 Query: 82 K 82 + Sbjct: 65 E 65 >gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 192 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ L+ +++ R G +S++S++E G ST ++ + LA L + +L Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLATALHVEVGQLF 61 >gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 254 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER I N R +R + LT E+ R+G + + IS++E + ++ + LA TLD P+ Sbjct: 65 ERAIAG-NVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVPV 123 Query: 78 WKLLK 82 L + Sbjct: 124 TSLFR 128 >gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 67 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R + +TQ+E G + + ++ ETGK + +D + +A L Sbjct: 5 KKQVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETGKQNLTLDTLEKVAAALGMAPK 64 Query: 79 KLL 81 L Sbjct: 65 SFL 67 >gi|160937081|ref|ZP_02084444.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] gi|158439982|gb|EDP17730.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC BAA-613] Length = 119 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + ++TQ+++ TG + IS +ETG + +++ ++I +A+ L+ Sbjct: 6 KAIGKRIKIQRIQREMTQEKLAELTGLSNPHISNVETGSTQVSLKSLIAIANALEITPDV 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|222109146|ref|YP_002551411.1| hypothetical transcription regulator protein [Agrobacterium vitis S4] gi|221738420|gb|ACM39285.1| hypothetical transcription regulator protein [Agrobacterium vitis S4] Length = 88 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N + +R ++Q+ + + IS++E + +D++ +A L P+ Sbjct: 5 RELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALGVPIT 64 Query: 79 KLLK 82 L K Sbjct: 65 DLFK 68 >gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] Length = 223 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ ++ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|194467035|ref|ZP_03073022.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454071|gb|EDX42968.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 115 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 N R + K+TQ+++ + + ++IS++E G + I+ + LA L+ P+ Sbjct: 3 KTIGKNITTRRHQLKMTQEQLAELSNLSVNYISKIERGTTPNISAKTLYRLAKGLNVPME 62 Query: 79 KLLK 82 LLK Sbjct: 63 NLLK 66 >gi|229030114|ref|ZP_04186176.1| Transcriptional regulator, XRE [Bacillus cereus AH1271] gi|228731172|gb|EEL82092.1| Transcriptional regulator, XRE [Bacillus cereus AH1271] Length = 197 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 17 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 76 >gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 112 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R + K+TQ+ + G ++ +S+ E G S + N+ LA + Sbjct: 46 RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSVE 105 Query: 79 KLLK 82 +LLK Sbjct: 106 ELLK 109 >gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 112 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R + K+TQ+ + G ++ +S+ E G S + N+ LA + Sbjct: 46 RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSVE 105 Query: 79 KLLK 82 +LLK Sbjct: 106 ELLK 109 >gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] Length = 217 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E KLTQ+++ G ++ IS E KS +I ++I ++ D L LLK Sbjct: 6 GCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65 >gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis DSM 17244] Length = 125 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K +Q ++ + + IS++E G S ++ ++ + + LD + +LL Sbjct: 9 LGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKASLQTLVDITNALDISMDELL 68 >gi|158424413|ref|YP_001525705.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158331302|dbj|BAF88787.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 216 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA +R+ N R +R+E +T + + + ++S +E G T +I ++ +A Sbjct: 21 DASNADRL--GPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATA 78 Query: 73 LDTPLWKLL 81 L + +L Sbjct: 79 LGVNIAQLF 87 >gi|254245401|ref|ZP_04938722.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] gi|124870177|gb|EAY61893.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] Length = 216 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 4 RKRDEPHLS-DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R R L D + + N R +R+ KLT E G ++ ++S++E G++T + Sbjct: 21 RFRSSMVLPPDESVLVAVSLGNKIRALRQRLKLTLDEAATTAGISKPFLSQVERGRATPS 80 Query: 63 IDNMIILAHTLDTPL 77 I +++ +A L + Sbjct: 81 ITSLVRIAKALGVTM 95 >gi|15673253|ref|NP_267427.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724246|gb|AAK05369.1|AE006359_7 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406810|gb|ADZ63881.1| transcriptional repressor [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +RK AKLTQ ++ + G Q+ E + ++ + LA D P+ +L+ Sbjct: 3 FGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 183 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R A LT +E+ +TG + IS++E + T ++ + +A Sbjct: 4 LQLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVTPSLPTLAKIAEAFGVSTAD 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|229017769|ref|ZP_04174656.1| hypothetical protein bcere0030_23120 [Bacillus cereus AH1273] gi|229023991|ref|ZP_04180470.1| hypothetical protein bcere0029_23160 [Bacillus cereus AH1272] gi|228737323|gb|EEL87839.1| hypothetical protein bcere0029_23160 [Bacillus cereus AH1272] gi|228743534|gb|EEL93647.1| hypothetical protein bcere0030_23120 [Bacillus cereus AH1273] Length = 185 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|205375367|ref|ZP_03228157.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 111 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + N R +R+E KLT +E+ R+ ++S+IS +E G + +I ++ +A TL L Sbjct: 1 MVGNRIRMLREERKLTMQELAVRSKVSKSYISSIERGLQKNPSIRILLRIADTLHVELED 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|163761211|ref|ZP_02168287.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] gi|162281550|gb|EDQ31845.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] Length = 203 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+ + F R +R +A LT + + +++G + ++S++E K+T + Sbjct: 6 RQPQPSRPADPVSPPA---FGERIREMRHKAGLTLQTLADQSGISVGFLSQVERDKATPS 62 Query: 63 IDNMIILAHTLDT 75 + + +A L Sbjct: 63 LGTLASVAAALGV 75 >gi|170740636|ref|YP_001769291.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium sp. 4-46] gi|168194910|gb|ACA16857.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium sp. 4-46] Length = 328 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +++K + + +G ++ +I++LETG ++I + +AH + PL L+ Sbjct: 45 LGQRVRTARAVRAMSRKALSHSSGLSERYIAQLETGHGNVSIILLRRVAHAIGVPLEDLI 104 Query: 82 KP 83 P Sbjct: 105 AP 106 >gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] Length = 184 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|157370058|ref|YP_001478047.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321822|gb|ABV40919.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 191 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N R R++A L+Q + ++ ++ ++ +E G +++ + LA L+ L++ Sbjct: 21 SNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSLAVLDKLADALNISFTDLIQ 79 >gi|58616432|ref|YP_195561.1| TrbA protein of DNA transfer system [Azoarcus sp. EbN1] gi|56315894|emb|CAI10537.1| TrbA protein of DNA transfer system [Aromatoleum aromaticum EbN1] Length = 120 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N + E +T++E+ +++G + S++S++ TGK ++ M +A L TPL L Sbjct: 5 IFFTNMLRLLDELHMTKQELADKSGVSISFLSDITTGKGNPSLKVMEDIAKALQTPLPLL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|262370712|ref|ZP_06064037.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314512|gb|EEY95554.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 182 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R L+Q+++ + G ++ ++ +E+G+ I++ + ++A L+ +++ Sbjct: 10 VSQNVRHYRSLKGLSQQQLADLAGLSRRMVAGVESGQDNISLAKLSLIADVLEVDFVQII 69 >gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR+ A L+ + +G A+ +S+LE+G I+ + L++TL P+ LL Sbjct: 10 LAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVSSLL 69 Query: 82 K 82 Sbjct: 70 T 70 >gi|166033247|ref|ZP_02236076.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] gi|166027604|gb|EDR46361.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] Length = 354 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E F IRKE K+TQ E+ + IS E G +I + LA L + Sbjct: 2 EAKQFGQFIAGIRKEKKMTQAELAEKIHVTDKAISRWERGLGFPDIQTLEPLAQVLGISV 61 Query: 78 WKLLK 82 +L++ Sbjct: 62 LELMR 66 >gi|75674859|ref|YP_317280.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419729|gb|ABA03928.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 259 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR L+ + + ++G +++ + ++ETGKST I + + +L P L Sbjct: 77 IVGKNLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFASL 136 Query: 81 L 81 + Sbjct: 137 I 137 >gi|229069943|ref|ZP_04203222.1| hypothetical protein bcere0025_21430 [Bacillus cereus F65185] gi|228713189|gb|EEL65085.1| hypothetical protein bcere0025_21430 [Bacillus cereus F65185] Length = 204 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|229079609|ref|ZP_04212144.1| hypothetical protein bcere0023_22630 [Bacillus cereus Rock4-2] gi|228703701|gb|EEL56152.1| hypothetical protein bcere0023_22630 [Bacillus cereus Rock4-2] Length = 190 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 10 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 69 Query: 79 KLL 81 L+ Sbjct: 70 SLI 72 >gi|229104520|ref|ZP_04235186.1| hypothetical protein bcere0019_36660 [Bacillus cereus Rock3-28] gi|228678856|gb|EEL33067.1| hypothetical protein bcere0019_36660 [Bacillus cereus Rock3-28] Length = 190 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 10 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 69 Query: 79 KLL 81 L+ Sbjct: 70 SLI 72 >gi|229139131|ref|ZP_04267708.1| hypothetical protein bcere0013_22440 [Bacillus cereus BDRD-ST26] gi|228644486|gb|EEL00741.1| hypothetical protein bcere0013_22440 [Bacillus cereus BDRD-ST26] Length = 204 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|229156016|ref|ZP_04284117.1| hypothetical protein bcere0010_22060 [Bacillus cereus ATCC 4342] gi|228627623|gb|EEK84349.1| hypothetical protein bcere0010_22060 [Bacillus cereus ATCC 4342] Length = 204 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|118477836|ref|YP_894987.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228946049|ref|ZP_04108387.1| hypothetical protein bthur0007_21990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|118417061|gb|ABK85480.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228813637|gb|EEM59920.1| hypothetical protein bthur0007_21990 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 204 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|17545878|ref|NP_519280.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428173|emb|CAD14861.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + RTG +S++S++E G S +I + LA L P L Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF 60 >gi|228952792|ref|ZP_04114863.1| hypothetical protein bthur0006_21880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806889|gb|EEM53437.1| hypothetical protein bthur0006_21880 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 204 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 37/63 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187] gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187] Length = 73 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK+ +TQ+E+ + G ++++S LE GK ++D + ++ L + + K+ K Sbjct: 2 NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60 >gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 I RM +R + +Q+E+ + ++ +S+ E+G++ ++D +I L+ Sbjct: 35 KTIEVIRMSLNQKIAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAKPDLDKIIALSDI 94 Query: 73 LDTPLWKLLK 82 D LLK Sbjct: 95 FDVSTDYLLK 104 >gi|257792947|ref|YP_003186346.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479639|gb|ACV59957.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 223 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F R +RKE LT ++ +G + + IS +E G+ D + LA L P L Sbjct: 4 FGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPYEDL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|226355114|ref|YP_002784854.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226317104|gb|ACO45100.1| putative Transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 80 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 1 MPRRKRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP RK P +D +++E R+ R +R + Q E G ++ +LE + Sbjct: 1 MPARK---PQPTDPLVQEVRIRVGQRIRELRLAKGMNQDEFAAAAGIHRTHPGKLENAQI 57 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + ++ +A L + +LL Sbjct: 58 DPQLSTLVKVASALGVRVDELLT 80 >gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] Length = 822 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R D + F + + R E LTQKE+ + +Q ++S +E S + Sbjct: 552 RPNDVTGSVLCVGVSVETFGDRLKKKRSEMSLTQKELADAANISQPFLSRIEKKSSEASS 611 Query: 64 DNMIILAHTLDT 75 DN+ LA L Sbjct: 612 DNVRALATALGV 623 >gi|148557504|ref|YP_001265086.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502694|gb|ABQ70948.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 252 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P R R R + L+ +E+ RTG S +S+LE GK + D ++ Sbjct: 25 SPETMAKTPRNTSQPGPALRAARLDKGLSLRELAARTGLPFSTLSKLENGKMGMTYDRLV 84 Query: 68 ILAHTLDTPLWKLL 81 +LA L + KL Sbjct: 85 LLAQALGVEIGKLF 98 >gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 199 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R L+ + + R+G ++S IS +E +S+ + LA L L L Sbjct: 9 LIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATALGVTLASL 68 Query: 81 LK 82 + Sbjct: 69 FE 70 >gi|15964024|ref|NP_384377.1| hypothetical protein SMc00351 [Sinorhizobium meliloti 1021] gi|15073200|emb|CAC41708.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 197 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P + +AI R +R LT ++ R+G +++ IS +E G+++ + Sbjct: 3 SPIMENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLA 62 Query: 68 ILAHTLDTPLWKLL 81 L L T L L Sbjct: 63 KLCSALGTTLSALF 76 >gi|65319713|ref|ZP_00392672.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+T +E + G + S IS++E G + ++ + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65 >gi|325845858|ref|ZP_08169056.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481764|gb|EGC84796.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N R L+ K++ + + S +S++E+GK+ +++ + +++ L P++ L Sbjct: 4 LGKNIKNFRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLF 63 >gi|205354377|ref|YP_002228178.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274158|emb|CAR39172.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629505|gb|EGE35848.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 188 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G ++ + L LD P +L Sbjct: 13 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPTLETLWSLCVALDIPFARL 72 Query: 81 LKP 83 L+P Sbjct: 73 LEP 75 >gi|167768231|ref|ZP_02440284.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|317497813|ref|ZP_07956125.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709755|gb|EDS20334.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|291560246|emb|CBL39046.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316894926|gb|EFV17096.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 115 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK LTQ+ + + G +Q +I E+E G+ ++I + L LD LL Sbjct: 8 LGKRIKLTRKGQDLTQEMLAEKAGVSQHYIYEIEAGRKAMSIHSFASLTTALDVSADYLL 67 >gi|330881957|gb|EGH16106.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 187 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|166362821|ref|YP_001655094.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843] gi|166085194|dbj|BAF99901.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843] Length = 73 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I + R+E +Q+ + TG +++IS+LE G + ++ + + + L Sbjct: 8 QILGRELQRYRQEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITNALG 62 >gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797] gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797] Length = 205 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 2 PRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 P RK+ + + + R +RKE + + G ++S +S++E G++ Sbjct: 5 PARKKTSATTGSELSPDEISGQLSQRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEA 64 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + + ++ L +L++ Sbjct: 65 NPTLAVTVRISQAFGIALGELVE 87 >gi|119962787|ref|YP_946870.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119949646|gb|ABM08557.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 175 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 28/48 (58%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +RK +T ++ + TG +Q+ +S++E G + + + LAH LD P Sbjct: 1 MRKAKGMTLAQLSDVTGLSQAIVSQIERGMANPSFTTLAQLAHGLDIP 48 >gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 226 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RKE LTQ+E G ++ +++ E G+S ++D +I +++ + KL+K Sbjct: 5 QKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDKLVK 63 >gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 292 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N + IRKE K+TQKE+ + G +Q+ IS++E G+++ ID + ++ L PL Sbjct: 7 HMIGNEIKRIRKEKKMTQKELCD--GICSQAEISKIENGRNSPTIDLLQQISKRLRVPLS 64 Query: 79 KLLK 82 L + Sbjct: 65 LLFR 68 >gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067] Length = 104 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|229606284|ref|YP_002876932.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236] gi|229607600|ref|YP_002878248.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236] gi|229607707|ref|YP_002878355.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236] gi|229608129|ref|YP_002878777.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236] gi|229368939|gb|ACQ59362.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236] gi|229370255|gb|ACQ60678.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236] gi|229370362|gb|ACQ60785.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236] gi|229370784|gb|ACQ61207.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236] Length = 69 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK LTQ ++ +S++ +E G+ I I+ + +A TL +L Sbjct: 8 LVGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNITIEKLYEIAETLGCDAKEL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|325123768|gb|ADY83291.1| hypothetical protein BDGL_002705 [Acinetobacter calcoaceticus PHEA-2] Length = 209 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R +R E L+Q+++ ++ G ++ I+ LETG+ I++ + +A L Sbjct: 37 VGTNIRLLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 90 >gi|326789972|ref|YP_004307793.1| hypothetical protein Clole_0862 [Clostridium lentocellum DSM 5427] gi|326540736|gb|ADZ82595.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 151 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE KL+Q + + G + ++I +LE G +I+ + +A L+ + +L Sbjct: 6 LKTKRKEMKLSQSALGSLVGVSGAYIQQLEAGTKNPSIETLKKIADALNIRVNELF 61 >gi|296131950|ref|YP_003639197.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296030528|gb|ADG81296.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 129 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R R++ +L++++ G + ++ +LE G+ +++ + +A Sbjct: 3 KKSEIDNKAIGQRIREEREKLELSREKFAEIIGLSDYYVGQLERGERQMSLRVLFKIARC 62 Query: 73 LDTPLWKLL 81 L L L+ Sbjct: 63 LHVSLDYLI 71 >gi|294501848|ref|YP_003565548.1| Cro/CI family transcriptional regulator [Bacillus megaterium QM B1551] gi|294351785|gb|ADE72114.1| transcriptional regulator, Cro/CI family [Bacillus megaterium QM B1551] Length = 140 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R + +Q+E+ N+ +++ IS+ E K T +I + + L + L +L+ Sbjct: 4 FGERIKHFRLKGGFSQEELANQLNVSRTTISKWECSKQTPSIFDFLSLCNCFQITLDQLI 63 Query: 82 KP 83 +P Sbjct: 64 EP 65 >gi|228939575|ref|ZP_04102160.1| hypothetical protein bthur0008_22320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975801|ref|ZP_04136334.1| hypothetical protein bthur0003_55330 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979054|ref|ZP_04139404.1| hypothetical protein bthur0002_22430 [Bacillus thuringiensis Bt407] gi|228780678|gb|EEM28895.1| hypothetical protein bthur0002_22430 [Bacillus thuringiensis Bt407] gi|228783910|gb|EEM31956.1| hypothetical protein bthur0003_55330 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820098|gb|EEM66138.1| hypothetical protein bthur0008_22320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940141|gb|AEA16037.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 185 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|315645386|ref|ZP_07898510.1| XRE family transcriptional regulator [Paenibacillus vortex V453] gi|315278864|gb|EFU42174.1| XRE family transcriptional regulator [Paenibacillus vortex V453] Length = 106 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK LTQ+E+ + G + S+I LE G+ + + + L+ + + Sbjct: 13 IREIRKNQNLTQEELAEKIGSSFSYIGRLERGEGNFTVQTLEKITTALNIDFFDFM 68 >gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 116 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + ++Q +I RTG + ++S +E G + +++ + +A LD PL + Sbjct: 4 GGTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQFF 62 >gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +T ++ TG ++S +S LE+G+ +++ ++ LA PL L+ Sbjct: 16 VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYGVPLDDLV 75 >gi|323342509|ref|ZP_08082741.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463621|gb|EFY08815.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 258 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 29/48 (60%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++Q+ + + ++ IS+ E G+S +IDN+I L+ L PL L+K Sbjct: 1 MSQEMLAEKLNISRQSISKWERGESLPSIDNLIRLSEILGIPLNDLVK 48 >gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL J1-208] Length = 110 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|229161388|ref|ZP_04289372.1| hypothetical protein bcere0009_21770 [Bacillus cereus R309803] gi|228622094|gb|EEK78936.1| hypothetical protein bcere0009_21770 [Bacillus cereus R309803] Length = 185 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|161617166|ref|YP_001591131.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551474|ref|ZP_02345229.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167991568|ref|ZP_02572667.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232973|ref|ZP_02658031.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237658|ref|ZP_02662716.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244212|ref|ZP_02669144.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263065|ref|ZP_02685038.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467376|ref|ZP_02701213.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821618|ref|ZP_02833618.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446538|ref|YP_002043263.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451910|ref|YP_002048044.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468718|ref|ZP_03074702.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736659|ref|YP_002116963.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251740|ref|YP_002148970.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263714|ref|ZP_03163788.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244893|ref|YP_002217966.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388606|ref|ZP_03215218.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930179|ref|ZP_03221156.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224585852|ref|YP_002639651.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912186|ref|ZP_04656023.1| hypothetical protein SentesTe_13791 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161366530|gb|ABX70298.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405201|gb|ACF65423.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410214|gb|ACF70433.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455082|gb|EDX43921.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712161|gb|ACF91382.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630241|gb|EDX48881.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215443|gb|ACH52840.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241969|gb|EDY24589.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289380|gb|EDY28745.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939409|gb|ACH76742.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605704|gb|EDZ04249.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320583|gb|EDZ05785.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323777|gb|EDZ11616.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330070|gb|EDZ16834.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332759|gb|EDZ19523.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336928|gb|EDZ23692.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341774|gb|EDZ28538.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348305|gb|EDZ34936.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224470380|gb|ACN48210.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|312915157|dbj|BAJ39131.1| hypothetical protein STMDT12_C41880 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225331|gb|EFX50389.1| Putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|326625758|gb|EGE32103.1| Helix-turn-helix type 3 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 182 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|226225799|ref|YP_002759905.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226088990|dbj|BAH37435.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 145 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R A +Q+ + G +++I +E G++ I+I+N+ +A L + L Sbjct: 7 FGKTVRRLRTNAGFSQETFADLVGMHRNYIGTVERGETNISIENIHRIARGLRITIAGLF 66 Query: 82 K 82 + Sbjct: 67 Q 67 >gi|134298753|ref|YP_001112249.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051453|gb|ABO49424.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 67 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R++ L+Q ++ QS I +E G+ + + LA L L KL Sbjct: 1 MLAVNLKQLREQKGLSQNQLAKLANVPQSAIHYIENGERNPGLQTVEKLADGLGVTLSKL 60 Query: 81 LK 82 ++ Sbjct: 61 VE 62 >gi|330890890|gb|EGH23551.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 199 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 PTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSR 61 Query: 69 LAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 LCDVLGMPMSKLF 74 >gi|296133125|ref|YP_003640372.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296031703|gb|ADG82471.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 89 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Query: 5 KRDEPHLSD-AILRERMIFVNNFRN----IRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 K+ + E++ + N + +R E L+QK++ ++ G QS IS LE+G+ Sbjct: 7 KKHLLQDPEVKSEYEKLQVLYNIKREIIRLRLEQGLSQKDLADKVGTKQSAISRLESGEY 66 Query: 60 TINIDNMIILAHTLDTPL 77 +++ + +AH L L Sbjct: 67 NPSVEFLTKIAHALGKEL 84 >gi|37678326|ref|NP_932935.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37197065|dbj|BAC92906.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 68 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N R RK ++Q ++ +S++ +E G+ I ++ LA L + LL Sbjct: 8 FGDNLRRERKLKGISQDKLAISADIDRSYVGRIERGEVNITLEKAYQLASILGCDVRDLL 67 >gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 186 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D I R R+ A L+ E+ R G A+S +S+LE+G +++ + L Sbjct: 4 DPAPPLATI-AAALRRERERAGLSLTELARRAGIAKSTLSQLESGSGNPSVETLWALGVA 62 Query: 73 LDTPLWKLLKP 83 LD P +L++P Sbjct: 63 LDVPFSRLVEP 73 >gi|296105405|ref|YP_003615551.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059864|gb|ADF64602.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 182 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ EI R G A+S +S+LE+G +++ + L LD P +L Sbjct: 7 VIAKSLVRERLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|269126718|ref|YP_003300088.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311676|gb|ACY98050.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 478 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++R+ +T ++ + G A S +S LE G+ + + LA L+ P+ +LL Sbjct: 10 FGQRLRHLRRARGMTLADLGAKVGRAPSQLSLLENGRREPKLSLLKSLAAALEVPVEELL 69 Query: 82 K 82 + Sbjct: 70 R 70 >gi|325681366|ref|ZP_08160892.1| putative restriction-modification system control element Bcll [Ruminococcus albus 8] gi|324106856|gb|EGC01146.1| putative restriction-modification system control element Bcll [Ruminococcus albus 8] Length = 75 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N RK KLTQ ++ +S IS +E G ++ D + L L+ + Sbjct: 10 ELFGANVVYYRKLKKLTQLQLAELADIDRSHISAIELGNVGVSFDLIFKLCEVLEIKPRQ 69 Query: 80 LL 81 L Sbjct: 70 LF 71 >gi|255534813|ref|YP_003095184.1| helix-turn-helix domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341009|gb|ACU07122.1| helix-turn-helix domain protein [Flavobacteriaceae bacterium 3519-10] Length = 491 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +++F + RK L+ +++ TG ++S+++E+E GK D +I LA L Sbjct: 9 KLVFGLKMKQYRKIKNLSLQDLATLTGLSKSYLNEIENGKKYPKHDKIIPLATALGCTYN 68 Query: 79 KLL 81 L+ Sbjct: 69 DLV 71 >gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia glumae BGR1] Length = 204 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E L+ E+ R G + +S++E K+ ++ + L L PL LL Sbjct: 19 VGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALSVPLSALL 78 Query: 82 K 82 + Sbjct: 79 E 79 >gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 183 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R IR+E L+Q+E+ + G IS +E K++ ++ ++ L + + + Sbjct: 4 GHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAEFFS 63 Query: 83 P 83 P Sbjct: 64 P 64 >gi|149180249|ref|ZP_01858754.1| transcriptional regulator, XRE family protein [Bacillus sp. SG-1] gi|148852441|gb|EDL66586.1| transcriptional regulator, XRE family protein [Bacillus sp. SG-1] Length = 106 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F R RK L+Q+E+ +R+GF + ++ +E GK+ ++ + +A L+ Sbjct: 25 KQSFGKVIRAHRKYKGLSQEELAHRSGFHHNHLNNIELGKAGMSHHTVFKVAAGLNVTPS 84 Query: 79 KLLK 82 +LLK Sbjct: 85 QLLK 88 >gi|108805301|ref|YP_645238.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766544|gb|ABG05426.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M K D + + ++ + N R R E LT +I R ++S +S++E G+++ Sbjct: 8 MKSAKNDNRRANTRLNPDQYL-GNFIRKYRLEKGLTLSDISARASISKSMLSKIENGQAS 66 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + LA L L + Sbjct: 67 PSLHTIARLAQALGVTLSTMF 87 >gi|253580339|ref|ZP_04857605.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848432|gb|EES76396.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 184 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK ++ ++ +TG ++S ++++E G + ++ + + L +L+ Sbjct: 8 VAVNLKRIRKSKSMSLDQVSEQTGVSKSMLAQIERGTANPSLGVLGKITSGLRIEFQELI 67 Query: 82 KP 83 +P Sbjct: 68 QP 69 >gi|308235770|ref|ZP_07666507.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114942|ref|YP_003986163.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946436|gb|ADP39140.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 210 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] Length = 208 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK LTQ+E+ +++ IS+ E+G+ +ID++ ++ + +LL Sbjct: 6 FHEKLQELRKSRGLTQEELAEALFVSRTAISKWESGRGYPSIDSLKEISRYFSVSIDELL 65 >gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] Length = 200 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R +++ SD +RK LT E+ R+G +Q+ IS++E G S+ Sbjct: 7 MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 58 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + LA+ L+ L KL Sbjct: 59 PSATILSRLANALNITLSKLF 79 >gi|229490457|ref|ZP_04384298.1| transcriptional regulator, Cro/CI family [Rhodococcus erythropolis SK121] gi|229322747|gb|EEN88527.1| transcriptional regulator, Cro/CI family [Rhodococcus erythropolis SK121] Length = 190 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + + + R A L+ E+ R A+S +S+LE+G +++ + L + Sbjct: 7 DTAETPQKLVAVALKRERTRAGLSLSEVARRADIAKSTLSQLESGLGNPSLETLWALGNA 66 Query: 73 LDTPLWKLL 81 L P +L+ Sbjct: 67 LGVPFSQLV 75 >gi|317054120|ref|YP_004118145.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952115|gb|ADU71589.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 199 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK + +E+ + G ++S+IS LE + +I ++ + + KL Sbjct: 21 VGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASIATLLKVCEVVGITPAKLF 80 Query: 82 KP 83 P Sbjct: 81 DP 82 >gi|206560147|ref|YP_002230911.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036188|emb|CAR52084.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 240 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R + D + + N R +R+ KLT E G ++ ++S++E G++T + Sbjct: 45 RLRTSMTVPPDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPS 104 Query: 63 IDNMIILAHTLDTPL 77 I +++ +A L + Sbjct: 105 ITSLVRIAQALGVTM 119 >gi|86133032|ref|ZP_01051619.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] gi|85816429|gb|EAQ37620.1| DNA binding helix-turn helix protein [Dokdonia donghaensis MED134] Length = 490 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF R IR + L+ + TG ++S+++E+E GK D + L+ LD P Sbjct: 7 KLIFGLKLRQIRTDKNLSLFGLSKLTGLSKSYLNEIEHGKKYPKPDKIFTLSEKLDIPYD 66 Query: 79 KLL 81 +++ Sbjct: 67 QMV 69 >gi|328947050|ref|YP_004364387.1| hypothetical protein Tresu_0124 [Treponema succinifaciens DSM 2489] gi|328447374|gb|AEB13090.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 106 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF+ N + RK+A LTQ+++ + S+I ++E + + + + +A L+ P+ Sbjct: 4 RRIFIQNMKYYRKQAGLTQEKLAEAIDMSTSYIGDMEARERFPSAETIDKIAAALEIPVS 63 Query: 79 KLL 81 L Sbjct: 64 LLF 66 >gi|322613196|gb|EFY10140.1| hypothetical protein SEEM315_17865 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619177|gb|EFY16060.1| hypothetical protein SEEM971_20829 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626043|gb|EFY22855.1| hypothetical protein SEEM973_21760 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626497|gb|EFY23303.1| hypothetical protein SEEM974_14708 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632390|gb|EFY29138.1| hypothetical protein SEEM201_18692 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635128|gb|EFY31849.1| hypothetical protein SEEM202_17461 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642669|gb|EFY39259.1| hypothetical protein SEEM954_08582 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647958|gb|EFY44430.1| hypothetical protein SEEM054_15121 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650708|gb|EFY47109.1| hypothetical protein SEEM675_00280 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652891|gb|EFY49228.1| hypothetical protein SEEM965_09839 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657206|gb|EFY53486.1| hypothetical protein SEEM19N_14452 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662306|gb|EFY58521.1| hypothetical protein SEEM801_06228 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666841|gb|EFY63017.1| hypothetical protein SEEM507_05993 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672111|gb|EFY68226.1| hypothetical protein SEEM877_04625 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675833|gb|EFY71905.1| hypothetical protein SEEM867_04673 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681751|gb|EFY77777.1| hypothetical protein SEEM180_13742 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684054|gb|EFY80063.1| hypothetical protein SEEM600_14844 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193326|gb|EFZ78541.1| hypothetical protein SEEM581_19668 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197683|gb|EFZ82816.1| hypothetical protein SEEM501_14961 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200743|gb|EFZ85814.1| hypothetical protein SEEM460_14930 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207252|gb|EFZ92204.1| hypothetical protein SEEM020_16655 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211454|gb|EFZ96295.1| hypothetical protein SEEM6152_00405 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218500|gb|EGA03208.1| hypothetical protein SEEM0077_08820 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221017|gb|EGA05449.1| hypothetical protein SEEM0047_14034 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225993|gb|EGA10212.1| hypothetical protein SEEM0055_20581 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231673|gb|EGA15785.1| hypothetical protein SEEM0052_06395 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236078|gb|EGA20156.1| hypothetical protein SEEM3312_17409 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239500|gb|EGA23549.1| hypothetical protein SEEM5258_18857 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243906|gb|EGA27917.1| hypothetical protein SEEM1156_17632 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249269|gb|EGA33186.1| hypothetical protein SEEM9199_02187 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250488|gb|EGA34371.1| hypothetical protein SEEM8282_08477 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258942|gb|EGA42594.1| hypothetical protein SEEM8283_01562 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260187|gb|EGA43810.1| hypothetical protein SEEM8284_01027 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265306|gb|EGA48803.1| hypothetical protein SEEM8285_17297 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270528|gb|EGA53974.1| hypothetical protein SEEM8287_12833 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 182 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8] gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans A8] Length = 184 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ L+ +++ RTG +S++S+LE G S +I ++ LA + +L+ Sbjct: 7 RLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGLGVSELV 63 >gi|255655682|ref|ZP_05401091.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451687|ref|ZP_06893419.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878931|ref|ZP_06902930.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|296259450|gb|EFH06313.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430044|gb|EFH15892.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 183 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N +R E L+ ++ +G ++ +S++E G S ++ + +A L+ P + Sbjct: 6 IIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAI 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 272 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+IR++ LTQ E+ R G + I ++E GK ++ + +A + Sbjct: 133 VIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQPSLRTIERVAEAVGVTPCYF 192 Query: 81 LKP 83 L P Sbjct: 193 LVP 195 Score = 43.8 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E L +E+ G + + +E + ++D + LA L+ + +L+ Sbjct: 69 LGQKLRLLREERGLALQELARLAGISIETLRAIEAEEVRPSVDTLRTLADHLNVSIPQLM 128 Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 25/49 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +R+E L+ +E+ +G + S++SE+E G + ++ L Sbjct: 6 IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPRIIDKISTALG 54 >gi|159897542|ref|YP_001543789.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890581|gb|ABX03661.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 491 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +IF R R EA L+ E R + S+++E+E G+ D ++ +A L + Sbjct: 8 LIFGMKLRQARLEANLSLTEFAARAELSPSYVTEMEKGRKYPKPDKIVKMAQVLGKGYDE 67 Query: 80 LL 81 L+ Sbjct: 68 LV 69 >gi|319647195|ref|ZP_08001417.1| ImmF control region protein [Bacillus sp. BT1B_CT2] gi|317390542|gb|EFV71347.1| ImmF control region protein [Bacillus sp. BT1B_CT2] Length = 79 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R + +N R + KLTQ E+ +TG ++S+IS++E G+ + LA +D L Sbjct: 3 DRKLLGALIKNQRCKKKLTQLELAEQTGLSRSYISDIENGRYIPGASTLTSLAICIDLDL 62 >gi|283782998|ref|YP_003373752.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|283441145|gb|ADB13611.1| DNA-binding protein [Gardnerella vaginalis 409-05] Length = 210 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|315499433|ref|YP_004088236.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417445|gb|ADU14085.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 99 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E L+Q E+ R Q +IS+LE GK + +LA L + Sbjct: 6 LVGLNVARLRTERGLSQLELALRCEILTQGYISKLEAGKRNPTVVIQYLLAEALGVEVGA 65 Query: 80 LL 81 L Sbjct: 66 LF 67 >gi|226306979|ref|YP_002766939.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226186096|dbj|BAH34200.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 190 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + + + R A L+ E+ R A+S +S+LE+G +++ + L + Sbjct: 7 DTAETPQKLVAVALKRERARAGLSLSEVARRADIAKSTLSQLESGLGNPSLETLWALGNA 66 Query: 73 LDTPLWKLL 81 L P +L+ Sbjct: 67 LGVPFSQLV 75 >gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor [Sphingomonas wittichii RW1] Length = 201 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R+ RK KLT E+ R+ + S+IS E GK+T +I +++ LA LD + Sbjct: 15 MSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDISY 74 Query: 80 LLKP 83 L P Sbjct: 75 FLAP 78 >gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L] gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 146 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ ++Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSLGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|229087336|ref|ZP_04219477.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] gi|228695973|gb|EEL48817.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] Length = 185 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + +R E ++T K++ +T + S+IS++E KS+I ++++ L+ L Sbjct: 6 GNKIKALRLEKRMTLKQVSEKTNLSISFISQVERSKSSITLESLKKLSEALHVSP 60 >gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R KLTQ+++ G ++ IS E KS +I ++I ++ D L LLK Sbjct: 6 GSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65 >gi|330876735|gb|EGH10884.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 189 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + +N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVAFSDLIQ 75 >gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 266 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +RK L+Q+E+ GF++ ++++E G I I M LA L L Sbjct: 7 QKQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGNRNIGILEMQKLATVLGFSLD 66 Query: 79 KLL 81 ++ Sbjct: 67 DIM 69 >gi|303242620|ref|ZP_07329095.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589828|gb|EFL59601.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 64 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q+++ + G + I +E+G ++ I + L+ L L Sbjct: 4 KKMKIARIECDLSQEQLAEKVGVTRQTIGMIESGNYNPTLNLCIEICKALNKTLNDLF 61 >gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 137 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + R+ R + ++Q +I RTG + ++S +E G + +++ Sbjct: 9 PSEMAVSPGPAPIN---IGMTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLE 65 Query: 65 NMIILAHTLDTPLWKLL 81 + +A LD PL + Sbjct: 66 TLQKIAAALDLPLSQFF 82 >gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] Length = 320 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 35/67 (52%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+ M F +N +R +TQ+++ G + +S+ E+G ST ++D ++ L + Sbjct: 5 ERDTMSFRDNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFEV 64 Query: 76 PLWKLLK 82 L L++ Sbjct: 65 DLDDLIR 71 >gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 40/63 (63%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF N ++RKEA ++Q+E+ ++ + IS+ E G+ T ++ + ++A +TP+ Sbjct: 2 KIIFSKNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVE 61 Query: 79 KLL 81 +LL Sbjct: 62 ELL 64 >gi|308067389|ref|YP_003868994.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305856668|gb|ADM68456.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 183 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R E KL+ ++ + TG +++ + ++E G+S +I + +A+ L Sbjct: 6 LILSKNLKYLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTA 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|295106954|emb|CBL04497.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 73 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R + +++R+E L+Q G ++++++++E G+ +++ + +A L Sbjct: 5 SETQRRL-GLRIKDLREERGLSQYACAPLLGVSRTYLADVECGRRNVSLATLDSIARGLG 63 Query: 75 TPLWKLLK 82 L +LLK Sbjct: 64 ISLEELLK 71 >gi|255602345|ref|XP_002537833.1| conserved hypothetical protein [Ricinus communis] gi|223514890|gb|EEF24550.1| conserved hypothetical protein [Ricinus communis] Length = 83 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L ++ F R +RK A +Q+ + +++IS +E G+ I + LA L Sbjct: 5 SLAPKLAFGRVLRRLRKAAGFSQERLALEADVRRTYISLIELGQHQPTITTLFKLAAALK 64 Query: 75 TPLWKLLK 82 L++ Sbjct: 65 QKPSDLIR 72 >gi|301062224|ref|ZP_07202901.1| helix-turn-helix protein [delta proteobacterium NaphS2] gi|300443656|gb|EFK07744.1| helix-turn-helix protein [delta proteobacterium NaphS2] Length = 180 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LT K I + G ++ ++S++E + ++D ++ + + + LL Sbjct: 7 IRRHRKDRNLTLKAIAEKAGISEGFMSQVENNVKSPSVDTLVKICNAIGVNAGDLL 62 >gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 272 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKEA LTQ+++ + + +S ETG+S +ID +LA L P L Sbjct: 7 IQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVPAVGLF 62 >gi|261377839|ref|ZP_05982412.1| DNA-binding protein [Neisseria cinerea ATCC 14685] gi|269146143|gb|EEZ72561.1| DNA-binding protein [Neisseria cinerea ATCC 14685] Length = 105 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N R R +Q+E+ + G ++++S +E + I + N+ +A LD + Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMATALDVAAY 77 >gi|313207090|ref|YP_004046267.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446406|gb|ADQ82761.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315022512|gb|EFT35539.1| putative prophage LambdaCh01, repressor protein [Riemerella anatipestifer RA-YM] gi|325335473|gb|ADZ11747.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 198 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + IR+ L+Q+ + + IS E G++ ++ ++ +A LD L+ Sbjct: 4 FGTNIKKIRQIKGLSQQAFADMLNLTRGIISSYEDGRAEPKVETLLRIAQFLDMKADDLI 63 >gi|167464931|ref|ZP_02330020.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 57 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 F N +RK+ ++Q+E+ + + IS +E G +N+ +A Sbjct: 5 FGQNVARLRKKKGMSQEELAEKLDVKKQTISNIERGVRYPTFENLEKIAQLF 56 >gi|284045383|ref|YP_003395723.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949604|gb|ADB52348.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 253 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P RK ++ L+D R R+ + +E+ R G + S IS +E GK+ Sbjct: 3 PPRKTEDGPLADVTQVALKDVGARLRRDREARGVGVRELARRIGVSPSLISAIELGKANP 62 Query: 62 NIDNMIILAHTLDTPLWKLL 81 +I + + L+ + +L+ Sbjct: 63 SIGTLYQIVDELNLSVDELM 82 >gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 108 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +++R+E KLTQ++I + G +S IS E+GK +++ +N+I A D + + Sbjct: 3 MFGQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYI 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|118479525|ref|YP_896676.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118418750|gb|ABK87169.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] Length = 237 Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 60 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 118 >gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 222 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R++ KLT +++ + G + S++S++E G+S ++ + LA L T + Sbjct: 1 MSVGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK+ K + E + G ++ + +LE G +I LA + L+ Sbjct: 80 ANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDIKLTKKLADIFNVSADYLI 138 >gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 179 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 33/55 (60%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R++R + LTQ+E+ R+ + +IS+LE ++ ++D++ + + L T + Sbjct: 4 GDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDM 58 >gi|225410097|ref|ZP_03761286.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] gi|225042384|gb|EEG52630.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R + +TQ+++ + G + +S E+G++ +I+ ++ L T L +L Sbjct: 5 QNLRQLRLDCGMTQEQVAAKIGLTRQALSSYESGRTRPDIEMLMRLCEVYGTDLDAIL 62 >gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia magna ATCC 29328] Length = 179 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 33/55 (60%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R++R + LTQ+E+ R+ + +IS+LE ++ ++D++ + + L T + Sbjct: 4 GDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDM 58 >gi|210632345|ref|ZP_03297312.1| hypothetical protein COLSTE_01206 [Collinsella stercoris DSM 13279] gi|210159661|gb|EEA90632.1| hypothetical protein COLSTE_01206 [Collinsella stercoris DSM 13279] Length = 69 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N IRKE L++ E + G ++ + +E G+ + + + LA + W Sbjct: 6 QHTLGRNICAIRKELGLSKVEFCLQLGISRVTLDLIEQGRDNVKLSTLDQLARAVGKEPW 65 Query: 79 KLLK 82 +LL+ Sbjct: 66 ELLR 69 >gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521] gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521] gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 179 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R E +LTQ+E+ NR ++ +IS++E ++ +I +I + L T L Sbjct: 1 MQIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLPD 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|281491791|ref|YP_003353771.1| transcriptional repressor [Lactococcus lactis subsp. lactis KF147] gi|281375505|gb|ADA65015.1| Transcriptional repressor [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +RK AKLTQ ++ + G Q+ E + ++ + LA D P+ +L+ Sbjct: 3 FGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLELLEKLADIYDLPIQELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 189 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E ++ E+ R G ++ +S LE G ++ + + L PL Sbjct: 25 VGQRIRRLREERGISLSELARRAGVGKATLSGLENGTRNPTLETLWAVTAQLGVPL 80 >gi|311739938|ref|ZP_07713772.1| possible DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305011|gb|EFQ81080.1| possible DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 124 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET------GKSTINIDNMIILAHTLDT 75 F R +RK ++Q+ + +G ++S IS LE + + + LA L+ Sbjct: 15 FSQQLRRVRKRRGISQQALAEISGVSRSQISNLERNENGVHAMADPQLSTVYKLALALEI 74 Query: 76 PLWKLL 81 P LL Sbjct: 75 PPAVLL 80 >gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 183 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK L+ E+ ++G +++ +S +E G ++ + LA + L Sbjct: 6 LAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVADLF 65 >gi|146313711|ref|YP_001178785.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320587|gb|ABP62734.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 182 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ EI R G A+S +S+LE+G +++ + L L P +L Sbjct: 7 VIAKSLVRERTRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALGIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|94311337|ref|YP_584547.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|254241486|ref|ZP_04934808.1| hypothetical protein PA2G_02182 [Pseudomonas aeruginosa 2192] gi|24461525|gb|AAN62096.1|AF440523_3 conserved hypothetical protein [Pseudomonas aeruginosa] gi|93355189|gb|ABF09278.1| Putative HTH-type transcriptional regulator yazB (modular protein) [Cupriavidus metallidurans CH34] gi|126194864|gb|EAZ58927.1| hypothetical protein PA2G_02182 [Pseudomonas aeruginosa 2192] Length = 97 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R A F R R + Q E +R G ++S + ++E G+ Sbjct: 8 PGRPSGTTTYESAAATA---FGQAVRAARVAQGVAQDEFASRAGISRSHMGKIERGEHVP 64 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + ++ ++ L +L+ Sbjct: 65 TLPLILKISVALGISAAELM 84 >gi|293610665|ref|ZP_06692965.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827009|gb|EFF85374.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 183 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R++R E L+Q+++ + G ++ I+ LETG+ I++ + +A L Sbjct: 11 VGTNIRSLRDERDLSQQDLADLAGVSRRTIAALETGQVNISLAKLDSIAAVLGV 64 >gi|229590899|ref|YP_002873018.1| putative helix-turn-helix transcriptional regulatory protein [Pseudomonas fluorescens SBW25] gi|229362765|emb|CAY49675.1| putative helix-turn-helix transcriptional regulatory protein [Pseudomonas fluorescens SBW25] Length = 262 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R+ AKL+Q ++ TG +Q +S +ETG++ + + L L+TPL + Sbjct: 8 GEQLRQLRRRAKLSQLDLALITGVSQRHLSCIETGRAKPSPGTLHNLLTALETPLEQ 64 >gi|205375274|ref|ZP_03228064.1| post-exponential-phase response transcriptional regulator [Bacillus coahuilensis m4-4] Length = 107 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R E ++ E+ R G A+S++S +E + ++ + +A L + Sbjct: 1 MIGERVKQLRLEKNMSMTELAERAGVAKSYLSAIERNLQKNPSVQFLEKVAQALGVSMDS 60 Query: 80 LL 81 +L Sbjct: 61 IL 62 >gi|160940818|ref|ZP_02088160.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC BAA-613] gi|158436338|gb|EDP14105.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC BAA-613] Length = 70 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+E K+T +E+ ++G ++S IS +E G+ + M +L+ L P KL Sbjct: 9 IKEFREEKKITLRELSEKSGISKSEISFIENGQRDPTLHTMCLLSLALGVPPAKLFT 65 >gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] Length = 295 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F ++IRK+ ++Q+ + + G ++ +++ ETG +I+NMI +++ + + + Sbjct: 1 MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|225389143|ref|ZP_03758867.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] gi|225044801|gb|EEG55047.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] Length = 73 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+E+ + G + I +E GK ++ + + L L L Sbjct: 14 KLKSARAALDLSQEELAEKVGVTRQTIGMIEAGKYNPTLNLCVAICKVLGKTLDDLF 70 >gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii PG-8A] gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii PG-8A] Length = 182 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+E+ NR + +IS+LE ++ +I + L L + Sbjct: 5 GKKIRALRLGNNLTQEELANRLELTKGYISQLENNLTSPSIQTLFSLLEVLGVETHEFF 63 >gi|163737915|ref|ZP_02145331.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] gi|161388531|gb|EDQ12884.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] Length = 188 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71 >gi|163743903|ref|ZP_02151274.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161382844|gb|EDQ07242.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 188 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71 >gi|28870630|ref|NP_793249.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971343|ref|ZP_03399458.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381233|ref|ZP_07229651.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061820|ref|ZP_07253361.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302131845|ref|ZP_07257835.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853878|gb|AAO56944.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923881|gb|EEB57461.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331019463|gb|EGH99519.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 189 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + +N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVAFSDLIQ 75 >gi|295095052|emb|CBK84142.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 182 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ EI R G A+S +S+LE+G +++ + L LD P +L Sbjct: 7 VIAKSLVRERLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|229030146|ref|ZP_04186208.1| hypothetical protein bcere0028_22270 [Bacillus cereus AH1271] gi|228731204|gb|EEL82124.1| hypothetical protein bcere0028_22270 [Bacillus cereus AH1271] Length = 204 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ K++ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|229176275|ref|ZP_04303750.1| hypothetical protein bcere0006_53300 [Bacillus cereus MM3] gi|228607182|gb|EEK64529.1| hypothetical protein bcere0006_53300 [Bacillus cereus MM3] Length = 204 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ K++ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 24 QLILAKNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|90414870|ref|ZP_01222836.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90324048|gb|EAS40639.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 208 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR LT +E RTG A+S +S++E + + M LA+ L + +L Sbjct: 29 LGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQLF 88 Query: 82 KP 83 P Sbjct: 89 AP 90 >gi|54302999|ref|YP_132992.1| HTH_3family transcriptional regulator [Photobacterium profundum SS9] gi|46916427|emb|CAG23192.1| putative transcriptional regulator, HTH_3family [Photobacterium profundum SS9] Length = 208 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR LT +E RTG A+S +S++E + + M LA+ L + +L Sbjct: 29 LGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQLF 88 Query: 82 KP 83 P Sbjct: 89 AP 90 >gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 142 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N +RK +Q+E+ + G ++ +S+ ETG+S +I+ A+ + Sbjct: 1 MSFAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKRFANVFGVTIDD 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|262200800|ref|YP_003272008.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084147|gb|ACY20115.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 192 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R T + R + S +S +ETG + +D ++ +A L T L +L++P Sbjct: 11 QRIRGLRIAKGWTLDALAARCFLSPSTLSRIETGHRRVALDQLVPIAQALGTTLDQLVEP 70 >gi|213028985|ref|ZP_03343432.1| hypothetical protein Salmonelentericaenterica_45075 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 89 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R++ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 29 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 88 Query: 81 L 81 L Sbjct: 89 L 89 >gi|159905237|ref|YP_001548899.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886730|gb|ABX01667.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 182 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + +RK L+ + N TG ++S + ++E G+ I ++ +++ L Sbjct: 6 EVISKNLKTLRKRKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTS 65 Query: 80 LLK 82 LLK Sbjct: 66 LLK 68 >gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 195 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E LT E+ RTG + S +S LE+G ++ ++ LA PL L+ Sbjct: 14 VGPRLRALRHERGLTLSELAERTGISTSTLSRLESGGRKPTLELLLPLARVHGVPLDDLV 73 >gi|239817492|ref|YP_002946402.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804069|gb|ACS21136.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 120 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R++A LTQ E+ +S IS++E G ++ + L + L L L Sbjct: 26 LGRNLRYFREQAGLTQVELAFDAEVERSRISKIERGHVNPSLLTLATLCYCLKITLPTLF 85 Query: 82 K 82 + Sbjct: 86 E 86 >gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus ATCC 19977] gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium abscessus] Length = 173 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E LT +E+ +RTG +S++S++E ST ++ + +A LD + +L Sbjct: 5 VRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFT 61 >gi|116696126|ref|YP_841702.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530625|emb|CAJ96972.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 204 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + EP + R +R +LT ++ + G ++ +S++ETG + + Sbjct: 2 KTHAEPPFEAQVPHIEESVGMVIRELRLRERLTIAQVAEQAGLSRGMLSKIETGSTMAGM 61 Query: 64 DNMIILAHTLDTPLWKLL 81 D + +A L P+ L Sbjct: 62 DTLARIARALGVPMAVLF 79 >gi|38233250|ref|NP_939017.1| putative DNA-binding protein [Corynebacterium diphtheriae NCTC 13129] gi|38199509|emb|CAE49160.1| Putative DNA-binding protein [Corynebacterium diphtheriae] Length = 193 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK------STINIDNMIILAHTLDT 75 F +R+ LTQ + +++ IS LE + S + + LA L Sbjct: 25 FGVRLHKLRRLRGLTQDGLAEIANLSRNQISNLERNENSATKSSDPTMSTIYRLARALHV 84 Query: 76 PLWKLL 81 P L+ Sbjct: 85 PPAALM 90 >gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 182 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP +DE + + I + R+ R+ A+++ +++ + G + ++S++E G Sbjct: 1 MPPPPQDENLAAVVSNAAQDI-GSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK 59 Query: 61 INIDNMIILAHTLDTPLWKL 80 + D + +A L L Sbjct: 60 PSADVLNQIAKALRVSAEVL 79 >gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 125 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-------INIDNMIILAHTLD 74 F + +RK L+Q+E+ R G ++ +S LE S + + LA L+ Sbjct: 18 FGHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARALE 77 Query: 75 TPLWKLL 81 P L+ Sbjct: 78 VPPTYLM 84 >gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +RK L+Q+ + + G IS +E GKS ++D + +A L Sbjct: 2 QTAKELLGMRIREVRKARHLSQERLAEKVGVEPKQISRIEGGKSAPSLDTLEAIAKHLQV 61 Query: 76 PLWKLL 81 + LL Sbjct: 62 QMKDLL 67 >gi|226325411|ref|ZP_03800929.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] gi|225206154|gb|EEG88508.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] Length = 135 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N R EA LTQ++ + ++ IS E KS +I ++I L+ L +LLK Sbjct: 4 GKKLKNARIEAGLTQEKAAEKIDVSRQTISNWENEKSYPDIISVIALSDLYSVSLDELLK 63 >gi|157147315|ref|YP_001454634.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895] gi|157084520|gb|ABV14198.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895] Length = 182 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 VIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|99081186|ref|YP_613340.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037466|gb|ABF64078.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 209 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 D E + R +RK+ T + ++ G A+S +S++E G+ + D + Sbjct: 13 AHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALK 72 Query: 68 ILAHTLDTPLWKLLKP 83 LA L + +L P Sbjct: 73 KLAVGLQISVPQLFTP 88 >gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862] Length = 180 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N + R++ ++Q+++ + G ++ IS+ E G + + N++ L+ L +L+K Sbjct: 4 GHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSALPSFKNVLALSDLFVVSLDELVK 63 >gi|312864376|ref|ZP_07724609.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100097|gb|EFQ58308.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 135 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ R + LTQ+E+ + G ++ +S E GK+ +I ++I L++ L + Sbjct: 2 MAVGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLSLDQ 61 Query: 80 LLK 82 L+K Sbjct: 62 LVK 64 >gi|262373626|ref|ZP_06066904.1| RtrR protein [Acinetobacter junii SH205] gi|262311379|gb|EEY92465.1| RtrR protein [Acinetobacter junii SH205] Length = 68 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E K TQ+ + + +S++ +E G++ + I+ + +AH L+ LL Sbjct: 9 GQLIRKKRIEKKTTQESLALQCCIDRSYMGRIERGEANLTIEKLYDIAHALEVDAKDLL 67 >gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] Length = 184 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +RKE KL+Q+E+ + S IS +E K + ++ ++ + + L Sbjct: 2 ETDSIGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKVSPSVSSLHKIVKVFNLSL 61 Query: 78 WKLLK 82 + Sbjct: 62 SEFFT 66 >gi|282892178|ref|ZP_06300649.1| hypothetical protein pah_c212o001 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497912|gb|EFB40260.1| hypothetical protein pah_c212o001 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 54 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 26/47 (55%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+++ + +++ +E G+ I I+N+ LA+ LD L+ Sbjct: 1 MSQEKLAEKADLHTNYVGSVERGERNIAIENIYALANALDCSPKDLM 47 >gi|150377496|ref|YP_001314091.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032043|gb|ABR64158.1| putative transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 70 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R IR +LTQ+E+ ++G + +I +E + + + +A L + Sbjct: 5 EVMAINLRRIRHVKQLTQEELAVQSGLSARYIGSIERADVSATVTVLGQIAAALGVEPAE 64 Query: 80 LLK 82 L+ Sbjct: 65 LVT 67 >gi|325274702|ref|ZP_08140747.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324100169|gb|EGB97970.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 187 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R++R A ++Q + R+G ++ + +E G+ +++ + ++A L L++ Sbjct: 18 NVRSLRNAAGMSQAVLAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLIQ 75 >gi|88801079|ref|ZP_01116626.1| transcriptional regulator, putative [Reinekea sp. MED297] gi|88776158|gb|EAR07386.1| transcriptional regulator, putative [Reinekea sp. MED297] Length = 496 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I + R+ A L+ K++ RT + S++SE+E GK + +++LAH L+ Sbjct: 9 RFILGIKIKQFRQNAGLSLKQLSERTQLSVSYLSEIEKGKKYPKPEKIVLLAHALNRTFD 68 Query: 79 KLL 81 +L+ Sbjct: 69 ELV 71 >gi|332297016|ref|YP_004438938.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180119|gb|AEE15807.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 100 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + RK+ +Q E R + I +E G + + D ++++A L+ P +L Sbjct: 8 FIRNLKFFRKQKGFSQSEFAERCDVSNGTIGNIECGAAKPSFDLILVMAAVLEIPPARLF 67 >gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 257 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI RNIR++ ++ +E+ R + S++SE+E G +++ + +A+ L+ Sbjct: 1 MIDGKLIRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQPSLETIEKMANALNISKNA 60 Query: 80 LL 81 L Sbjct: 61 LF 62 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + IR+E LTQ E+ + G + I ++E+G+ ++ + +AH L Sbjct: 140 VGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGRVEPSLKTLEKIAHALSLSP 195 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R+E ++ E+ + G + +++ ++E G + ++ + LA L Sbjct: 70 RNSRSIGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNALPSLSTLKALAEALCMT 129 Query: 77 LWKLL 81 L+ Sbjct: 130 AQDLM 134 >gi|296166113|ref|ZP_06848558.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898522|gb|EFG78083.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 191 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + R +R + +T +E+ G S +S LE+GK + +D++ LA Sbjct: 3 AKTAPDIDLQVRRRLRELRMQRGMTLQEVGAIAGIDISTLSRLESGKRRLALDHLPRLAR 62 Query: 72 TLDTPLWKLLKP 83 L +LL+P Sbjct: 63 ALSVSTDELLQP 74 >gi|284042165|ref|YP_003392505.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946386|gb|ADB49130.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 90 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 I + F R +R L+Q+++ G +++++ +E G+ + M+ L Sbjct: 9 QPIGPTYITFGRTIRELRVRRGLSQEQLGLHGGLHRNYVASIERGEINPTLRTMLRLQRG 68 Query: 73 LDTPLWKLL 81 LD PL +++ Sbjct: 69 LDFPLSEIV 77 >gi|254466433|ref|ZP_05079844.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687341|gb|EDZ47823.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 186 Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR A L+ + TG +++ + ++E G+S+ I + +A PL LL Sbjct: 9 NLREIRSAAGLSLSKAAEITGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALL 65 >gi|291530671|emb|CBK96256.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 120 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + +TQ E+ R + +++S +ET + ++D ++++A+ L+ L Sbjct: 7 LLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKSCSLDTLVMVANELNVSTDDL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606] gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606] Length = 224 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + IRK K+TQKE+ ++G QS IS+LETG + + +++ LA L +L Sbjct: 8 LGENLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAK-STGSILELATALGVTAEEL 65 >gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1] gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13] gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40] gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1] Length = 228 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RKE L+Q+ + + G+ +QS I E G ++ ++ ++ TL L Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVSFVDL 63 Query: 81 L 81 + Sbjct: 64 V 64 >gi|145294858|ref|YP_001137679.1| hypothetical protein cgR_0805 [Corynebacterium glutamicum R] gi|140844778|dbj|BAF53777.1| hypothetical protein [Corynebacterium glutamicum R] Length = 124 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75 F + + +R +Q+E+ + +G +++ IS E ++ + N+ LA LD Sbjct: 13 FASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDV 72 Query: 76 PLWKLL 81 P L+ Sbjct: 73 PPIVLM 78 >gi|15807558|ref|NP_296294.1| transcriptional regulator [Deinococcus radiodurans R1] gi|6460399|gb|AAF12112.1|AE002086_4 transcriptional regulator, HTH_3 family [Deinococcus radiodurans R1] Length = 131 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E L K++ + ++S+LE G++ +++ + LA + + LL+ Sbjct: 7 ERLRELRSERGLRLKDVAEVADISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLE 65 >gi|315645343|ref|ZP_07898468.1| hypothetical protein PVOR_07550 [Paenibacillus vortex V453] gi|315279385|gb|EFU42691.1| hypothetical protein PVOR_07550 [Paenibacillus vortex V453] Length = 82 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + F R RKE +LTQ ++ + +S+ISELE G+ + + LA L Sbjct: 10 ELLAFGRALRKTRKEKELTQDQLSLYSRVDRSYISELENGEKAPTLLTITALARALHVKA 69 Query: 78 WKLLK 82 L++ Sbjct: 70 SLLIE 74 >gi|148252332|ref|YP_001236917.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404505|gb|ABQ33011.1| transcriptional regulator, XRE family with shikimate kinase activity [Bradyrhizobium sp. BTAi1] Length = 306 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 4 RKRDEPHLSDAILRERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 R D P E R +R A +++K + +G ++ +I++LE+GK Sbjct: 3 RDSDAPRDDGQSAAETDFLDQLGQRVRRMRGLAGMSRKVLAQVSGISERYIAQLESGKGN 62 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++I + +A+ ++ PL ++ Sbjct: 63 VSIVLLRRIANAINAPLDDII 83 >gi|300694645|ref|YP_003750618.1| transcriptional regulator, xre family [Ralstonia solanacearum PSI07] gi|299076682|emb|CBJ36021.1| putative transcriptional regulator, XRE family [Ralstonia solanacearum PSI07] Length = 216 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + D P + R RK LT + R+G A S IS+ E G + + Sbjct: 9 RNDGPAQDPSAQLNHKEVGARIREARKALGLTLSALSERSGVALSTISKAERGDIALTYE 68 Query: 65 NMIILAHTLDTPLWKLL 81 LAH L +LL Sbjct: 69 KFAGLAHALGLEFEQLL 85 >gi|222085057|ref|YP_002543586.1| hypothetical protein Arad_1139 [Agrobacterium radiobacter K84] gi|221722505|gb|ACM25661.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 207 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 R E + L N R +R + + +G +++ + ++ETGKS+ I Sbjct: 13 PRAESVDEISSLT-----GQNLRRLRTRRGYSLDRLAKISGVSRAMLGQVETGKSSPTIS 67 Query: 65 NMIILAHTLDTPLWKLL 81 + +A LD P L+ Sbjct: 68 ILWKIAAALDVPCGSLI 84 >gi|206975246|ref|ZP_03236160.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] gi|206746667|gb|EDZ58060.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] Length = 78 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R +K++Q+E+ + +++IS LE GK I+ + L+ L + Sbjct: 5 QTFGTVLQEYRLNSKMSQEELAFNSELDRTYISLLERGKRKPTINTVFALSKALKINPSQ 64 Query: 80 LLK 82 L+K Sbjct: 65 LIK 67 >gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R+E T +++ R + S++SE+E G ++ + LA L+ +L++ Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKTQLVE 64 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IR E ++ +E+ ++ G + S++SE+E G ++ + +A L P Sbjct: 72 LSLGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVPATA 131 Query: 80 LL 81 L+ Sbjct: 132 LM 133 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++R+E LTQ ++ N G I ++E GK ++ + L+ + Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSP 194 >gi|322804952|emb|CBZ02511.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ + ++ +S++E G + I+ + +A+ L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|298369856|ref|ZP_06981172.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014 str. F0314] gi|298281316|gb|EFI22805.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014 str. F0314] Length = 153 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 2 PRRKRDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 PRRK + I R F ++R + TQ E+ G Q ++S +E K Sbjct: 59 PRRKAAMDRAAAKIADKITRKAGGETFVSLRMKKGFTQSELAAAAGLRQPYLSRIENSKQ 118 Query: 60 TINIDNMIILAHTLDTPLWKL 80 +++ + + LA+ L ++ Sbjct: 119 SLHNETVQKLANALGVSPLEV 139 >gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 200 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +T E+ RTG ++S +S LE+G+ ++ +++LA D PL L+ Sbjct: 12 VGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDLV 71 >gi|170755017|ref|YP_001780261.1| cupin domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120229|gb|ACA44065.1| cupin domain protein [Clostridium botulinum B1 str. Okra] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ + ++ +S++E G + I+ + +A+ L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|168183318|ref|ZP_02617982.1| cupin domain protein [Clostridium botulinum Bf] gi|237793956|ref|YP_002861508.1| cupin domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182673516|gb|EDT85477.1| cupin domain protein [Clostridium botulinum Bf] gi|229263990|gb|ACQ55023.1| cupin domain protein [Clostridium botulinum Ba4 str. 657] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ + ++ +S++E G + I+ + +A+ L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|206967661|ref|ZP_03228617.1| DNA-binding protein [Bacillus cereus AH1134] gi|218236090|ref|YP_002365489.1| DNA-binding protein [Bacillus cereus B4264] gi|228919545|ref|ZP_04082909.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951193|ref|ZP_04113308.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957113|ref|ZP_04118883.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042556|ref|ZP_04190299.1| Transcriptional regulator [Bacillus cereus AH676] gi|229068379|ref|ZP_04201682.1| Transcriptional regulator [Bacillus cereus F65185] gi|229078006|ref|ZP_04210615.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|229149032|ref|ZP_04277277.1| Transcriptional regulator [Bacillus cereus m1550] gi|229177222|ref|ZP_04304609.1| Transcriptional regulator [Bacillus cereus 172560W] gi|229188901|ref|ZP_04315934.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|206736581|gb|EDZ53728.1| DNA-binding protein [Bacillus cereus AH1134] gi|218164047|gb|ACK64039.1| DNA-binding protein [Bacillus cereus B4264] gi|228594606|gb|EEK52392.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228606228|gb|EEK63662.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228634572|gb|EEK91156.1| Transcriptional regulator [Bacillus cereus m1550] gi|228705344|gb|EEL57721.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228714840|gb|EEL66712.1| Transcriptional regulator [Bacillus cereus F65185] gi|228726775|gb|EEL77989.1| Transcriptional regulator [Bacillus cereus AH676] gi|228802560|gb|EEM49407.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808490|gb|EEM54994.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840188|gb|EEM85465.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 67 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|153940779|ref|YP_001389988.1| cupin domain-containing protein [Clostridium botulinum F str. Langeland] gi|152936675|gb|ABS42173.1| cupin domain protein [Clostridium botulinum F str. Langeland] gi|295318072|gb|ADF98449.1| cupin domain protein [Clostridium botulinum F str. 230613] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ + ++ +S++E G + I+ + +A+ L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|148378625|ref|YP_001253166.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934328|ref|YP_001383012.1| DNA-binding cupin domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935310|ref|YP_001386559.1| helix-turn-helix domain-containing protein [Clostridium botulinum A str. Hall] gi|168177994|ref|ZP_02612658.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226947877|ref|YP_002802968.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|148288109|emb|CAL82177.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930372|gb|ABS35872.1| DNA-binding/cupin domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931224|gb|ABS36723.1| helix-turn-helix domain protein [Clostridium botulinum A str. Hall] gi|182671201|gb|EDT83175.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226840881|gb|ACO83547.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 183 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ + ++ +S++E G + I+ + +A+ L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|229541873|ref|ZP_04430933.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326293|gb|EEN91968.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 180 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R + LT K++ +T ++S++E G S++ I ++ +A +L + P Sbjct: 6 KKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEISYFFNP 65 >gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 124 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75 F + + +R +Q+E+ + +G +++ IS E ++ + N+ LA LD Sbjct: 13 FASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDV 72 Query: 76 PLWKLL 81 P L+ Sbjct: 73 PPIALM 78 >gi|134299415|ref|YP_001112911.1| cupin 2 domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052115|gb|ABO50086.1| Cupin 2, conserved barrel domain protein [Desulfotomaculum reducens MI-1] Length = 180 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 IF R +R + +T K++ +TG + S++S++E G S++ I ++ +A L+ Sbjct: 3 EIF-EKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNV 57 >gi|325674989|ref|ZP_08154676.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554575|gb|EGD24250.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 182 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ A LT + + TG +S++S++E G ST +I + +A LD + +L Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGISTPSIAVALKIARALDADVSQLF 60 >gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 218 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ R++ +T ++ N TG + +S++E G ++ ++ + +LA+ L P+ + Sbjct: 35 GREVRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSLTTLQLLANALSVPITSFFR 94 >gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 198 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ER + R +R+E L+ ++ + +QS IS++E G + ++ ++ +A Sbjct: 9 PSAEERPLEKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAISPSLASINAIA 68 Query: 71 HTLDTPLWKLL 81 L+ P+ L Sbjct: 69 SALNVPITALF 79 >gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile] gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 179 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L + Sbjct: 4 GEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLREFF 62 >gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R+ + ++ E+ R G A+S +S+LE+G +++ + L LD + +LL Sbjct: 11 GPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQLLD 70 Query: 83 P 83 P Sbjct: 71 P 71 >gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LT + + +TG +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 >gi|150389852|ref|YP_001319901.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949714|gb|ABR48242.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R E TQ+++ N G + IS +E GK +I I +A L+ L L Sbjct: 4 SRMKVARVEKDFTQEDLANIVGVTRQTISLIEGGKYNPSIKLCIEIAKALNKTLNDLF 61 >gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 252 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R L+Q+++ + ++ +S+ ETG+S +++ +I LA + + Sbjct: 37 LTLGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSVPDLEKIIKLADLFGVNVDE 96 Query: 80 LLK 82 L++ Sbjct: 97 LVR 99 >gi|313894180|ref|ZP_07827745.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441004|gb|EFR59431.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R A +TQ ++ TG QS IS++E G ++ + +AH L Sbjct: 32 QNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGNPSLKTLQKIAHAFGKKL 85 >gi|289422654|ref|ZP_06424494.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289156833|gb|EFD05458.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 72 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ N+ IRKE TQ ++ F+Q +IS +E G +I I LA L Sbjct: 2 EKFQVCNSVSVIRKERGYTQLKLAKLADFSQQYISNIERGVLIPSIAKAIKLAEVLGVCH 61 Query: 78 WKLL 81 +L Sbjct: 62 GELF 65 >gi|126651763|ref|ZP_01723965.1| transcriptional regulator [Bacillus sp. B14905] gi|126591441|gb|EAZ85548.1| transcriptional regulator [Bacillus sp. B14905] Length = 179 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK +++ +E+ + + ++ + ++E G++ ++ + + L PL LL Sbjct: 7 VGMNLREIRKNKRMSLEELASISNVSKLTLGKIERGETNPTVNILWKICRGLHIPLVSLL 66 >gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena XCL-2] Length = 198 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RK+ LT +I ++G ++ +S++E G+ + ++D+++ ++ TL P+ + Sbjct: 14 GKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKISRTLGVPISSFFR 73 >gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + D + + LD +LL Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNELL 65 >gi|228915036|ref|ZP_04078637.1| hypothetical protein bthur0012_22610 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844620|gb|EEM89670.1| hypothetical protein bthur0012_22610 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 505 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 34/80 (42%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ P L A + + R++R E +T ++ G A S +S LE GK I Sbjct: 11 RRPPGPALPLAEEPDALTIGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPTI 70 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + +A L + LL P Sbjct: 71 ARLQAVARALGAGVEDLLDP 90 >gi|291542798|emb|CBL15908.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 117 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +A LTQ+++ G + + +S +ETG + +++ ++ +A+ L Sbjct: 6 KAIGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANALGITSDD 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|240171997|ref|ZP_04750656.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 174 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ LT +++ +TG +S++S++E G ST +I + ++ LD + +L Sbjct: 5 LRAVRRHRGLTLEQLAEQTGLTKSYLSKIERGHSTPSIAVALKVSRALDVDVGRLF 60 >gi|238025656|ref|YP_002909888.1| Transcriptional regulator [Burkholderia glumae BGR1] gi|237880321|gb|ACR32652.1| Transcriptional regulator [Burkholderia glumae BGR1] Length = 101 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLW 78 + + +R+ +TQK++ R G + S++SE+ETG K +I ID + A P+ Sbjct: 1 MLFQALKLLRRYHGMTQKDLAARLGISNSYLSEIETGVKKDSITIDLLEKYAAVFGIPVS 60 Query: 79 KLL 81 LL Sbjct: 61 SLL 63 >gi|284991527|ref|YP_003410081.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064772|gb|ADB75710.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 503 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ R+ LTQ+++ R G +QS ++ +E G + ++ + L+ L+ L+ Sbjct: 8 VRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQNLTLELLGRLSEALERELF 60 >gi|228908186|ref|ZP_04072033.1| hypothetical protein bthur0013_23470 [Bacillus thuringiensis IBL 200] gi|228851458|gb|EEM96265.1| hypothetical protein bthur0013_23470 [Bacillus thuringiensis IBL 200] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ K++ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 10 QLILAKNLKTIREKEKISLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 69 Query: 79 KLL 81 L+ Sbjct: 70 SLI 72 >gi|167760581|ref|ZP_02432708.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] gi|167661802|gb|EDS05932.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N + IRK L+ ++ T ++S +S+LE G+ I + L+ L P Sbjct: 6 QIIAENLKEIRKGKGLSLEQASALTSISKSMLSQLERGEVNPTISTVYKLSLGLKVP 62 >gi|49479309|ref|YP_036566.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330865|gb|AAT61511.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|52143041|ref|YP_083788.1| transcriptional regulator [Bacillus cereus E33L] gi|51976510|gb|AAU18060.1| transcriptional regulator [Bacillus cereus E33L] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 181 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE L+ +E+ S +S++E G + +I + +LA +LD P Sbjct: 2 ENIDIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKLLAKSLDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|260655689|ref|ZP_05861162.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629606|gb|EEX47800.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 123 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R++RK +LTQ+++ T ++ +I LE+ + + ++ + LA L+ Sbjct: 1 MSFGLRLRSLRKAHQLTQQQLAEVTEVSRIYIQALESNRRSPSMKLLHKLADALEVDPAD 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 108 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 N R R E +TQ+++ N TG + ++IS LE G + ++ ++ +A L T + KL Sbjct: 4 LGANIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDKL 63 Query: 81 L 81 + Sbjct: 64 V 64 >gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|30262447|ref|NP_844824.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527739|ref|YP_019088.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49185288|ref|YP_028540.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165868486|ref|ZP_02213146.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631841|ref|ZP_02390168.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641366|ref|ZP_02399617.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687094|ref|ZP_02878313.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704501|ref|ZP_02894967.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649164|ref|ZP_02932166.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565652|ref|ZP_03018572.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033739|ref|ZP_03101150.1| DNA-binding protein [Bacillus cereus W] gi|196039938|ref|ZP_03107241.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196043346|ref|ZP_03110584.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218903579|ref|YP_002451413.1| DNA-binding protein [Bacillus cereus AH820] gi|225864404|ref|YP_002749782.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227814743|ref|YP_002814752.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228927494|ref|ZP_04090549.1| hypothetical protein bthur0010_22050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936937|ref|ZP_04099680.1| hypothetical protein bthur0009_53450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229091415|ref|ZP_04222628.1| hypothetical protein bcere0021_22260 [Bacillus cereus Rock3-42] gi|229121988|ref|ZP_04251206.1| hypothetical protein bcere0016_22860 [Bacillus cereus 95/8201] gi|229184650|ref|ZP_04311851.1| hypothetical protein bcere0004_22110 [Bacillus cereus BGSC 6E1] gi|229600709|ref|YP_002866774.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685025|ref|ZP_05148885.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722431|ref|ZP_05184219.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737473|ref|ZP_05195176.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743343|ref|ZP_05201028.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751788|ref|ZP_05203825.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760306|ref|ZP_05212330.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257078|gb|AAP26310.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502887|gb|AAT31563.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179215|gb|AAT54591.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715212|gb|EDR20729.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510643|gb|EDR86038.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532139|gb|EDR94775.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130302|gb|EDS99163.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669145|gb|EDT19889.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084238|gb|EDT69296.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563679|gb|EDV17644.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195993419|gb|EDX57376.1| DNA-binding protein [Bacillus cereus W] gi|196025655|gb|EDX64324.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029197|gb|EDX67801.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535334|gb|ACK87732.1| DNA-binding protein [Bacillus cereus AH820] gi|225787891|gb|ACO28108.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227002907|gb|ACP12650.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228598863|gb|EEK56482.1| hypothetical protein bcere0004_22110 [Bacillus cereus BGSC 6E1] gi|228661516|gb|EEL17138.1| hypothetical protein bcere0016_22860 [Bacillus cereus 95/8201] gi|228691926|gb|EEL45670.1| hypothetical protein bcere0021_22260 [Bacillus cereus Rock3-42] gi|228822716|gb|EEM68605.1| hypothetical protein bthur0009_53450 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832213|gb|EEM77795.1| hypothetical protein bthur0010_22050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265117|gb|ACQ46754.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG] gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF] Length = 210 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + + +++A R +R A LT + G +Q +S++E G Sbjct: 11 PDQDEEGGTVAEADERGTDGLGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNP 70 Query: 62 NIDNMIILAHTLDTP 76 + +I LA L P Sbjct: 71 SYTTLIKLADALRVP 85 >gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 203 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + +RK+ LTQ+ + +TG + + I++ E G +T +I+N+ +LA + Sbjct: 7 KENFKEILKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNTPSIENLRVLADFFKVSIR 66 Query: 79 KLLK 82 L+ Sbjct: 67 NFLE 70 >gi|320012087|gb|ADW06937.1| Cupin 2 conserved barrel domain protein [Streptomyces flavogriseus ATCC 33331] Length = 194 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM 17241] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R E K++ +++ RTG S +S++E +I+ + ++A L+ P++K Sbjct: 7 GSVLQASRGEKKISLRQLAERTGLTASMLSQIERNLVNPSINTLKVIAAALEIPMYKFF 65 >gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + ++ +E+ + + S++S++E GK++ +I+N+ +AHTLD + Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|238023508|ref|YP_002907740.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237878173|gb|ACR30505.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 201 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RR P A + +R E KLT ++ G ++S +SE+E K+ Sbjct: 8 RRGAPAPVTDAATPPR---VGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPT 64 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 I L + L L +L P Sbjct: 65 IAVAWRLTNALGISLDELFAP 85 >gi|225374410|ref|ZP_03751631.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans DSM 16841] gi|225213648|gb|EEG96002.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans DSM 16841] Length = 86 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 ++ HL+ L R V ++ RK +TQ+ + R G +S IS E+GK ++D + Sbjct: 11 EKKHLAGQQLTPRYEVVQQLKDARKAQDMTQEVLAERVGTKKSNISRFESGKYNPSLDFL 70 Query: 67 IILAHTLDTP 76 I +A +L Sbjct: 71 IKVAGSLGKQ 80 >gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 204 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+ E+ R G + +S++E K+ ++ + L L+ PL LL Sbjct: 19 VGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALL 78 Query: 82 K 82 + Sbjct: 79 E 79 >gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 181 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R + +IS+LE ++ +I + + + + Sbjct: 4 GERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQEFF 62 >gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 191 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R A LT + G +Q +S++E G + +I LA L P Sbjct: 12 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVP 66 >gi|228921132|ref|ZP_04084463.1| hypothetical protein bthur0011_21390 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838525|gb|EEM83835.1| hypothetical protein bthur0011_21390 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 211 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ I + +A+ L Sbjct: 31 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTITTIWKIANGLKVSFT 90 Query: 79 KLL 81 L+ Sbjct: 91 SLI 93 >gi|206973843|ref|ZP_03234761.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959938|ref|YP_002338494.1| DNA-binding protein [Bacillus cereus AH187] gi|222096025|ref|YP_002530082.1| DNA-binding protein [Bacillus cereus Q1] gi|206747999|gb|EDZ59388.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217067028|gb|ACJ81278.1| DNA-binding protein [Bacillus cereus AH187] gi|221240083|gb|ACM12793.1| DNA-binding protein [Bacillus cereus Q1] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104] gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor domain [Mycobacterium avium 104] Length = 178 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LT + + +TG +S++S++E G+ST +I + +A LD + +L Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60 >gi|320093956|ref|ZP_08025785.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979114|gb|EFW10628.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 80 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R L+Q + + G + IS +E+G I + + L L L Sbjct: 18 AKNLRMKAARAGRGLSQASLAEQVGVTRQTISAVESGDYNPTIALCVRICRALGVTLDDL 77 Query: 81 L 81 Sbjct: 78 F 78 >gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A+++ E+ +G + S +S +E G + +++ + LA L P + Sbjct: 10 GAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 68 >gi|210624072|ref|ZP_03294172.1| hypothetical protein CLOHIR_02124 [Clostridium hiranonis DSM 13275] gi|210153205|gb|EEA84211.1| hypothetical protein CLOHIR_02124 [Clostridium hiranonis DSM 13275] Length = 189 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RN RK +T +++ + TG + +IS++E ++ ++ ++ +LD P + L Sbjct: 1 MLGERIRNFRKNKSITLQQLSDETGLSIGYISQIERNLVDPSLSSLRKISKSLDIPTYLL 60 Query: 81 LK 82 ++ Sbjct: 61 ME 62 >gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 207 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K D+ + +I + +R TQ ++ TGF + ++S++E K Sbjct: 1 MTSKKADKQDSASSIEIQ---LGGRISKLRTSRGFTQDKLALETGFTKGYLSKIENSKVI 57 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 I ++ +A LDT L LL+P Sbjct: 58 PPIGTLVKIAQVLDTDLSALLEP 80 >gi|47565769|ref|ZP_00236809.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|47557405|gb|EAL15733.1| transcriptional regulator, merR family [Bacillus cereus G9241] Length = 186 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +T +E + G + S IS++E G + + + ++A L+ PL+ L Sbjct: 6 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPFLSVLELIAKALNVPLFTLF 65 >gi|298384446|ref|ZP_06994006.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298262725|gb|EFI05589.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 103 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 10/79 (12%) Query: 14 AILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ER F + R+EAK+TQ E+ R +S+IS +E+G ++ Sbjct: 22 PGTPEREKFDEEAYAFYTGQILLDARREAKVTQSELAKRINATKSYISRIESGAINPSVG 81 Query: 65 NMIILAHTLDTPLWKLLKP 83 + + L + +++KP Sbjct: 82 TFYRIINALGLKI-EIVKP 99 >gi|265764159|ref|ZP_06092727.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256767|gb|EEZ28113.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163497|emb|CBW23048.1| putative DNA binding protein [Bacteroides fragilis 638R] Length = 103 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R+ RK+ K+TQ+E+ + G A+S+I+ +E G++ I I + +A L Sbjct: 43 YGEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGIE 97 >gi|229100244|ref|ZP_04231136.1| hypothetical protein bcere0020_54410 [Bacillus cereus Rock3-29] gi|229115912|ref|ZP_04245309.1| hypothetical protein bcere0017_22030 [Bacillus cereus Rock1-3] gi|228667574|gb|EEL23019.1| hypothetical protein bcere0017_22030 [Bacillus cereus Rock1-3] gi|228683176|gb|EEL37162.1| hypothetical protein bcere0020_54410 [Bacillus cereus Rock3-29] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] Length = 210 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E LTQ E+ G ++ I E G NID ++ ++ L + LL Sbjct: 3 LGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGTRIPNIDILLNISKALGVTINNLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|146343555|ref|YP_001208603.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196361|emb|CAL80388.1| Shikimate kinase [Bradyrhizobium sp. ORS278] Length = 307 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A +++K + +G ++ +I++LE+GK ++I + +A+ ++ PL ++ Sbjct: 25 LGQRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDII 84 >gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 180 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RN RK+ +TQ+ + + G ++ +S+ E+GK + + L+ L +L+ Sbjct: 4 GENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADRLI 62 >gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] Length = 89 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R++RK+ LTQ+++ + + +I+++ETGK T ++ + A D L Sbjct: 5 REDYGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLD 64 Query: 79 KLL 81 LL Sbjct: 65 YLL 67 >gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 181 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ NR + +IS+LE ++ +I + + + + Sbjct: 4 GERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQEFF 62 >gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] Length = 206 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 31/67 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R +R+E ++ + + +G + + +S +E G ++ ++ + LA L Sbjct: 7 QAESIDVGQRLRALREERNISIRALARLSGLSANALSMIERGMTSPSVSTLNKLAIALKV 66 Query: 76 PLWKLLK 82 P+ + Sbjct: 67 PVTAFFR 73 >gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 186 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R R A L+ E+ R G A+S +S+LE G ++ + L+ L+ P Sbjct: 10 EVIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGNPGVETLWALSVALNVPFAT 69 Query: 80 LLKP 83 L++P Sbjct: 70 LVEP 73 >gi|148378758|ref|YP_001253299.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153933921|ref|YP_001383147.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937706|ref|YP_001386695.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288242|emb|CAL82316.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152929965|gb|ABS35465.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933620|gb|ABS39119.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 64 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R E L+Q+++ + G + IS +E+GK ++ I + L+ L L Sbjct: 1 MVNRKMKIARVECDLSQQQLAEKVGVTRQTISMIESGKYNPSLKLCIGICEVLNKTLNDL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|317499839|ref|ZP_07958077.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316898741|gb|EFV20774.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R ++ L+QKE+ G A+S S E+G N++ + +A L+ LL Sbjct: 5 FNENLKEARIKSGLSQKEVSENIGVAKSTYSLYESGNREPNVNTIKKIADVLNVSADTLL 64 >gi|312897732|ref|ZP_07757148.1| LexA repressor family protein [Megasphaera micronuciformis F0359] gi|310621116|gb|EFQ04660.1| LexA repressor family protein [Megasphaera micronuciformis F0359] Length = 218 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-------INIDNMIILAHTLDTPLW 78 R R+ L+ +E R G ++++IS +E GK+T +ID M +A L+ L Sbjct: 8 IREYRQSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIADGLEMDLD 67 Query: 79 KLLK 82 LL+ Sbjct: 68 VLLR 71 >gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family [Gardnerella vaginalis 409-05] Length = 94 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA+ ER + + RK A LTQ E+ +TG +QS IS LE G I + +A+ Sbjct: 22 DALQPERDL-TMSLVMARKRAGLTQAELSEKTGISQSDISRLENGSRNPTIALLNRIANA 80 Query: 73 LD 74 L+ Sbjct: 81 LN 82 >gi|256545000|ref|ZP_05472368.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256399296|gb|EEU12905.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++F N+ + +RKE +Q+++ + G +++ IS +ETG+ +IL L+ Sbjct: 3 DKLVFKNHLKEVRKEKGYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|212696965|ref|ZP_03305093.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] gi|212676053|gb|EEB35660.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] Length = 212 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N R L+ K++ + + S +S++E+GK+ +++ + +++ L P++ L Sbjct: 31 LGKNIKNSRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLF 90 >gi|163942112|ref|YP_001646996.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013578|ref|ZP_04170711.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|163864309|gb|ABY45368.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228747738|gb|EEL97608.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 194 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 35/59 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + ++A+ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 75 >gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28] gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] Length = 157 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|210622345|ref|ZP_03293114.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM 13275] gi|210154333|gb|EEA85339.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM 13275] Length = 68 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ +I NN + R E KL+Q + G +++ IS +ETG+ +IL LD Sbjct: 1 MKDELILKNNLKQARAEKKLSQAALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555] gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016] gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + IR+ LTQK++ + G I+ E K +I+ + +A LD + L Sbjct: 3 VGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENNKREPSIETLNKIAKALDVTINDL 61 >gi|84501143|ref|ZP_00999378.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391210|gb|EAQ03628.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 207 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E ++ + R +RK T ++ G A+S +S++E G+ + D + LA L + Sbjct: 23 EPLVLGDRVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALRKLATGLGISV 82 Query: 78 WKLLKP 83 +L P Sbjct: 83 PQLFTP 88 >gi|254475134|ref|ZP_05088520.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214029377|gb|EEB70212.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 186 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR++A L+ + TG +++ + ++E G+S+ I + +A PL L+ Sbjct: 9 NLREIRQDAGLSLSKAAEITGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLSALI 65 >gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 111 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R L+Q E+ + ++ +S+ E G++T +ID ++ LA L Sbjct: 4 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 63 Query: 80 LL 81 L+ Sbjct: 64 LV 65 >gi|16126938|ref|NP_421502.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235724|ref|YP_002518161.1| Xre family transcriptional regulator [Caulobacter crescentus NA1000] gi|13424292|gb|AAK24670.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964897|gb|ACL96253.1| transcriptional regulator, Xre family [Caulobacter crescentus NA1000] Length = 76 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++ N R +R+ + Q E+ + +++S +E GK I++ + LA L Sbjct: 9 RLVVGANIRALREARGVPQDELAHVAEIHPTYLSGIENGKRNISLRVLERLAAALVVSEA 68 Query: 79 KLLK 82 +L++ Sbjct: 69 ELVR 72 >gi|148547381|ref|YP_001267483.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148511439|gb|ABQ78299.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 272 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R++A L+Q E+ TG +Q +S +ETG++ + + L LD PL + Sbjct: 18 GQHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASPGTLHALLSALDAPLER 74 >gi|291562330|emb|CBL41146.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 96 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R +TQ+E+ R G ++ +S +E G+ +ID +I L+ L L Sbjct: 8 FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERNCSIDLLIELSCILHVSTDYL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 188 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL+ Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 >gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 193 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 E I + +R+E LT E+ R + IS +E G + ++ + LA Sbjct: 3 DKKTETELEI-GRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHVSPSLGTLQALAD 61 Query: 72 TLDTPLWKLL 81 L + L Sbjct: 62 ALSVSMMALF 71 >gi|221210345|ref|ZP_03583325.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221169301|gb|EEE01768.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 90 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + +Q+ + +++IS +E G + +I+ + + ++L+ L +L Sbjct: 2 GKRIKECRHATEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAELFA 61 Query: 83 P 83 P Sbjct: 62 P 62 >gi|84516199|ref|ZP_01003559.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84509895|gb|EAQ06352.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 207 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 35/78 (44%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R A + + + R +RK T ++ + G A+S +S++E G+ + D Sbjct: 11 RIAHENGSASVAQPLDLGARVRELRKARDWTLEQAARQAGLARSTLSKIENGQMSPTYDA 70 Query: 66 MIILAHTLDTPLWKLLKP 83 + LA LD + +L P Sbjct: 71 LKKLAVGLDISVPQLFTP 88 >gi|47570141|ref|ZP_00240798.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47553205|gb|EAL11599.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 185 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|289673453|ref|ZP_06494343.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 149 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L+ + R+ +L ++ G +Q +S++E + + ++DN+ Sbjct: 2 NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61 Query: 67 IILAHTLDTPLWKLL 81 L L P+ KL Sbjct: 62 SRLCDVLGMPMSKLF 76 >gi|94314004|ref|YP_587213.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357856|gb|ABF11944.1| transcriptional regulator, XRE family with cupin sensor domain [Cupriavidus metallidurans CH34] Length = 251 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + H+ + +R F R RK T + +G + + IS E G+ + Sbjct: 2 KETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLALG 61 Query: 63 IDNMIILAHTLDTPLWKLL 81 DN + L + ++ Sbjct: 62 YDNFAAIGKALQMDMGEMF 80 >gi|329943947|ref|ZP_08292216.1| restriction-modification system control element Bcll [Actinomyces sp. oral taxon 170 str. F0386] gi|328531380|gb|EGF58222.1| restriction-modification system control element Bcll [Actinomyces sp. oral taxon 170 str. F0386] Length = 61 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 34/56 (60%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ L+Q+++ RT S+I ++E G+ +++ N++ +AH LDT L+ Sbjct: 1 MRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHALDTDAGGLV 56 >gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 255 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+ I + RK LTQKE+ R G + + ++E GK ++ + ++ L Sbjct: 134 ERKNSIIAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNASLKTIEKISQVLGV 193 Query: 76 PLWKLL 81 + L+ Sbjct: 194 SVCYLI 199 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ + R +R+E L+ + N TG + +++SELE G + + + +A L P Sbjct: 69 KLNIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTVPAVGTLKKIAACLGVP 126 >gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 196 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ I ++E ++ ++ + LA L + Sbjct: 15 QSLARNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 74 Query: 80 LL 81 LL Sbjct: 75 LL 76 >gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E T +E+ R + S++SE+E G ++ + LA L+ +L++ Sbjct: 5 GEQIRALREERGYTLQELARRANLSFSYLSEIERGSKKPSLKTIEKLAAVLNVAKSQLVE 64 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R E L+ +E+ + + S++SE+E G +++ + ++ +LD Sbjct: 72 LTLGNKIRMLRNEKALSLQELSTTSEISLSYLSEIERGTIYPSLNTLKKISESLDVSASV 131 Query: 80 LL 81 L+ Sbjct: 132 LM 133 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N + +R++ TQ ++ G I ++E K ++ + L+ L Sbjct: 139 LGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKVQPSLKTLEKLSGVLGIS 193 >gi|218133469|ref|ZP_03462273.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC 43243] gi|217990844|gb|EEC56850.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC 43243] Length = 143 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 3 RRKRDEPHLSDAILRE---RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 R+++ E + R I + +R+ ++Q ++ T + S+IS +E K Sbjct: 8 RKRKQEVQSMNQTQTSVNHRQI-GYRIKEVRELNHISQAQLAEMTDLSVSYISHIENAKR 66 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 +++++I + + L + +LL Sbjct: 67 KASLESIIRIVNALGITVDELL 88 >gi|217966210|ref|YP_002351888.1| gp33 [Listeria monocytogenes HCC23] gi|217335480|gb|ACK41274.1| gp33 [Listeria monocytogenes HCC23] gi|307572181|emb|CAR85360.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] Length = 158 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +RK TQ++I G ++ S +E G++ +++ ++ LA+ L Sbjct: 1 MFGNRLKQLRKNNNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFGVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|309789599|ref|ZP_07684180.1| BsaWI endonuclease [Oscillochloris trichoides DG6] gi|308228335|gb|EFO81982.1| BsaWI endonuclease [Oscillochloris trichoides DG6] Length = 366 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF N + R++ TQ+++ G IS +ETG++ + +A L+ + Sbjct: 4 KEIFGKNVQFKRRQINWTQEDLAEAVGVDTRTISRIETGETATEFTTIEKIASALNIDAY 63 Query: 79 KLL 81 +L Sbjct: 64 QLF 66 >gi|229062186|ref|ZP_04199510.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228717169|gb|EEL68845.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 226 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D+++ LA LDT L +L Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|157324992|ref|YP_001468418.1| gp33 [Listeria phage A500] gi|66733000|gb|AAY52819.1| gp33 [Listeria phage A500] Length = 142 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +RK TQ++I G ++ S +E G++ +++ ++ LA+ + L Sbjct: 1 MFGNRLKQLRKNTNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|332295759|ref|YP_004437682.1| helix-turn-helix domain protein [Thermodesulfobium narugense DSM 14796] gi|332178862|gb|AEE14551.1| helix-turn-helix domain protein [Thermodesulfobium narugense DSM 14796] Length = 184 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I NN + IR+E KL+ ++ TG ++S + ++E G+S + + + L Sbjct: 6 FIIANNLKKIREERKLSLDKLSEITGVSKSMLGQIERGESNPTVTTLKKITTGLKISFTA 65 Query: 80 LLK 82 LL+ Sbjct: 66 LLE 68 >gi|330448085|ref|ZP_08311733.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492276|dbj|GAA06230.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 208 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + ++ I ++ + IR LT +E TG A+S +S++E + + Sbjct: 11 PSMRVEKEQSPQPIAPLKL--GERLKEIRVSHGLTLEEASKLTGLARSTLSKIENEQISP 68 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 69 TFQAMQKLATGLAIDIPQLFEP 90 >gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] Length = 111 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + +R+E +TQ+++ + + E G + ID ++ +A + L L Sbjct: 19 LFGDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDYL 78 Query: 81 L 81 L Sbjct: 79 L 79 >gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 141 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R LTQ I N TG + IS +ETG + + + +I LA+ LD + + Sbjct: 8 KAIGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANVLDVSVDE 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|224367960|ref|YP_002602123.1| transcriptional regulator (Cro/CI family protein) [Desulfobacterium autotrophicum HRM2] gi|223690676|gb|ACN13959.1| transcriptional regulator (Cro/CI family protein) [Desulfobacterium autotrophicum HRM2] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + I N + R +LT +E+ +RTG + ++S++E + + +A L+ + Sbjct: 2 DEKIISVNIKRFRTSKRLTLQELADRTGLTKGYLSKVERSQKAPPYSTLSKIAAALEVEI 61 Query: 78 WKLL 81 LL Sbjct: 62 TTLL 65 >gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 195 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P AI R +R+ ++ + + G ++ +S LE G Sbjct: 14 VPGHPATADDDPAAI-------GRRVRALREARGISLSALARQAGVGKATLSGLENGTRN 66 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + + L PL +L Sbjct: 67 PTLETLYAITAQLGVPLTAVL 87 >gi|298252935|ref|ZP_06976729.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1] gi|297533299|gb|EFH72183.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1] Length = 158 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA+ ER + + RK A LTQ E+ +TG +QS IS LE G I + +A+ Sbjct: 86 DALQPERDL-TMSLVMARKRAGLTQAELSEKTGISQSDISRLENGSRNPTIALLNRIANA 144 Query: 73 LD 74 L+ Sbjct: 145 LN 146 >gi|257869745|ref|ZP_05649398.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|309778441|ref|ZP_07673356.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|257803909|gb|EEV32731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|308913804|gb|EFP59629.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 69 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N + +RKE KL+Q E+ G +++ IS +ETG+ ++L LD Sbjct: 3 EHLILKNRLKEVRKEKKLSQTELAEMVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 187 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKEA LT +E+ ++G +Q ++S+ E G + ++ N+ LA +L T LL Sbjct: 13 GAAVRTARKEAGLTLREVAVKSGLSQPFLSQTENGHAVPSVMNLHRLAQSLGTTAHSLL 71 >gi|56696467|ref|YP_166824.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678204|gb|AAV94870.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 217 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 4 RKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R ++ ER R RK+ +T E+ T + +S++E G Sbjct: 8 RMTQLLQDPHSVREEREKVLEVAIGREVRAFRKQQGITVAELSKLTDLSIGMLSKIENGN 67 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 ++ ++ + LA+ L PL K Sbjct: 68 TSPSLTTLQTLANALSVPLTAFFK 91 >gi|56963509|ref|YP_175240.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] gi|56909752|dbj|BAD64279.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] Length = 101 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + R + +LT KE+ AQS IS E G ++DN+ LA + L Sbjct: 1 MFASRLKECRIKKQLTMKELGQALNMAQSTISGYENGTRKPDLDNLARLADYFNVSTDYL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 197 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R+ RK L+ + + + G + +S+LE G ++ ++ LA L Sbjct: 10 QRAVETLGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGALGI 69 Query: 76 PLWKLL 81 P+ +LL Sbjct: 70 PVAQLL 75 >gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 210 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T E+ RTG ++S +S LE G ++ ++ LA PL +L+ Sbjct: 26 VGPRLRELRRRHGMTLAELAERTGISESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 85 >gi|118479657|ref|YP_896808.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118418882|gb|ABK87301.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 241 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N ++RK+ +Q+E G ++ +S+ E+G S ++ ++ +A+ + L +L+K Sbjct: 5 ENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASIPELERLVEIANIFEVSLDELVK 63 >gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 105 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ L+ ++ G QS +S +E G+ + ID ++ + + L L + Sbjct: 4 VGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGERSPTIDVIMKICNALGITLVEFF 63 >gi|257091659|ref|YP_003165302.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048668|gb|ACV37855.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 123 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF N + E +T+ E+ + + S++S+L GK+ ++ M +A L+TPL Sbjct: 4 HIFFTNILRLLDERGMTKNELAAKADISISFLSDLTNGKANPSLKIMEAIAEALETPLPT 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLE 66 >gi|229117990|ref|ZP_04247350.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228665439|gb|EEL20921.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 190 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|332671330|ref|YP_004454338.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340368|gb|AEE46951.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 488 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++ R++R +T +++ G A S +S LE G + + +A L P+ Sbjct: 16 DTLVLGRRIRHLRTGRGMTLEDLGRAIGRAPSQVSMLENGHREPRVGVLAAVADALGVPV 75 Query: 78 WKLLKP 83 +LL+P Sbjct: 76 AELLRP 81 >gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] Length = 139 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK L+Q+E+ R + IS+ E G S + D +I +A + + +L Sbjct: 1 MLNENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSVPDADMLIKIADIFEVSVSEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|89069978|ref|ZP_01157310.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044426|gb|EAR50557.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 201 Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE T ++ + G A+S +S++E G+ + D + LA LD + +L Sbjct: 20 LGARVRELRKERDWTLEQAARKAGLARSTLSKIENGQMSPTYDALKKLATGLDISIPQLF 79 Query: 82 KP 83 P Sbjct: 80 TP 81 >gi|269836105|ref|YP_003318333.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269785368|gb|ACZ37511.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 992 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R R R+ A LTQ+++ RT ++ +IS+LE G+ ++ + L L Sbjct: 11 RGRPTRGELLRRYRRLAGLTQEQLAERTDYSVDYISKLERGQRRLSAATLDRLVQPLG 68 >gi|257453157|ref|ZP_05618456.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|317059692|ref|ZP_07924177.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313685368|gb|EFS22203.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] Length = 185 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RNIR L KE+ + + S +S++E G + +++ + +A L+ PL+K Sbjct: 7 VGNIIRNIRLSKGLLIKEVAMKCDISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 66 >gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 124 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N RK+ TQ E+ R G +S E G + ++ + LA L PL+K Sbjct: 14 LILGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYK 73 Query: 80 LL 81 L+ Sbjct: 74 LV 75 >gi|260433557|ref|ZP_05787528.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260417385|gb|EEX10644.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 207 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 E + R +RK T ++ N+ G A+S +S++E G+ + D + LA L+ Sbjct: 20 TEPEPVDLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLATGLE 79 Query: 75 TPLWKLLKP 83 + +L P Sbjct: 80 ISVPQLFTP 88 >gi|229065829|ref|ZP_04201033.1| hypothetical protein bcere0026_58150 [Bacillus cereus AH603] gi|228715445|gb|EEL67269.1| hypothetical protein bcere0026_58150 [Bacillus cereus AH603] Length = 185 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ +G +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus JCSC1435] gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 134 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 RN+RK K++Q+++ + ++ IS E S+ +I ++ + L Sbjct: 4 KSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVSSPDIHALLEMTELFGVSLNH 63 Query: 80 LLK 82 L+K Sbjct: 64 LVK 66 >gi|299768445|ref|YP_003730471.1| Helix-turn-helix family protein [Acinetobacter sp. DR1] gi|298698533|gb|ADI89098.1| Helix-turn-helix family protein [Acinetobacter sp. DR1] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|297158608|gb|ADI08320.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R+ +++ + + R+ + S++S+LE G+S+ +I + +A L Sbjct: 18 PAERPESDVGRRVHAFRRLRRMSLRALAERSDVSGSFLSQLERGRSSASISTLARIASAL 77 Query: 74 DTPLWKLL 81 + +L Sbjct: 78 GITMAELF 85 >gi|260220717|emb|CBA28555.1| hypothetical protein Csp_A07760 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 210 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + ++ RK +L+ E+ R G ++S +SE+E ++ + + LA L L LL Sbjct: 29 VGSKLQDARKAQQLSLDELSKRAGVSKSMLSEVERNQANPTVGVLWRLATALGISLTDLL 88 >gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 201 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I NN + +R++ KL+ ++ TG +++ + ++E G+S+ +I + +A+ L Sbjct: 22 LILANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLSFSS 81 Query: 80 LL 81 L+ Sbjct: 82 LI 83 >gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 128 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75 F + + +R +Q+E+ + +G +++ IS E ++ + N+ LA LD Sbjct: 17 FASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDV 76 Query: 76 PLWKLL 81 P L+ Sbjct: 77 PPIALM 82 >gi|77919382|ref|YP_357197.1| helix-turn-helix transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545465|gb|ABA89027.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 124 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 30/48 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R LTQ+E+ +R G ++ ++S++E+GK ++ + +A LD PL Sbjct: 72 RDYRSLTQQELADRAGISKPYLSQIESGKRQGTVETLAAIARALDVPL 119 >gi|328948101|ref|YP_004365438.1| hypothetical protein Tresu_1233 [Treponema succinifaciens DSM 2489] gi|328448425|gb|AEB14141.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 114 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R R + K+TQ+E+ + G IS++ETGK+ + + L+ ++ Sbjct: 9 KILGANIRCYRIKLKMTQEELAEKAGITSVGISKIETGKTWPKKETIEKFLEILEVKPFQ 68 Query: 80 LLK 82 L Sbjct: 69 LFT 71 >gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 365 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 18 ERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +R IF +RK K+TQ ++ + G + +S+ E+G S +I ++ L+ Sbjct: 23 DRKIFIPGAMGERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLSCPDIMTLVPLSQV 82 Query: 73 LDTPLWKLL 81 L +LL Sbjct: 83 LGVSTDELL 91 >gi|228985529|ref|ZP_04145685.1| hypothetical protein bthur0001_22230 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774206|gb|EEM22616.1| hypothetical protein bthur0001_22230 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324326453|gb|ADY21713.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 185 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|33599736|ref|NP_887296.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] gi|33567333|emb|CAE31246.1| putative transcriptional regulator [Bordetella bronchiseptica RB50] Length = 201 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R IRKE K++ + + R+G A +S++E ++ + + LD PL Sbjct: 5 DTRLVGQAIRRIRKEKKISLQTLAARSGVATGMLSQIERDLGNPSLKTLARIRQALDVPL 64 Query: 78 WKLL 81 L Sbjct: 65 SALF 68 >gi|28901246|ref|NP_800901.1| hypothetical protein VPA1391 [Vibrio parahaemolyticus RIMD 2210633] gi|153835937|ref|ZP_01988604.1| conserved domain protein [Vibrio parahaemolyticus AQ3810] gi|260362803|ref|ZP_05775672.1| conserved domain protein [Vibrio parahaemolyticus K5030] gi|260880091|ref|ZP_05892446.1| conserved domain protein [Vibrio parahaemolyticus AN-5034] gi|260895208|ref|ZP_05903704.1| conserved domain protein [Vibrio parahaemolyticus Peru-466] gi|28809759|dbj|BAC62734.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750691|gb|EDM61436.1| conserved domain protein [Vibrio parahaemolyticus AQ3810] gi|308085564|gb|EFO35259.1| conserved domain protein [Vibrio parahaemolyticus Peru-466] gi|308091862|gb|EFO41557.1| conserved domain protein [Vibrio parahaemolyticus AN-5034] gi|308112048|gb|EFO49588.1| conserved domain protein [Vibrio parahaemolyticus K5030] Length = 68 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R++RK+ ++Q ++ +S++ +E G+ I ++ +A L + +LL Sbjct: 8 FGYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDIRELL 67 >gi|291526890|emb|CBK92476.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 97 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 31/56 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + +R LTQ+++ ++ G ++ + +E+G ++I +D + +A LD Sbjct: 3 ELLGSRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDV 58 >gi|229048166|ref|ZP_04193735.1| hypothetical protein bcere0027_41350 [Bacillus cereus AH676] gi|228723153|gb|EEL74529.1| hypothetical protein bcere0027_41350 [Bacillus cereus AH676] Length = 74 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK L+Q+++ +++I LE + ++ + +A+ L+ L+ Sbjct: 7 FGTVLKKHRKLNGLSQEQLAFLCDLDRTYIGLLERSQRQPSLKTIFRIANELNISASDLI 66 Query: 82 K 82 + Sbjct: 67 R 67 >gi|226360646|ref|YP_002778424.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239131|dbj|BAH49479.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 115 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P S R ++ R R++ + +++ G ++ ++SE+E GK + + + Sbjct: 12 AAPDGSGEEPLVRELYGRVLREARRDQDRSLEDVAAAVGMSKQYLSEIERGKKEPSSEML 71 Query: 67 IILAHTLDTPLWKLL 81 + L + LL Sbjct: 72 RAVCGALGMSVEHLL 86 >gi|152982459|ref|YP_001354080.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282536|gb|ABR90946.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 221 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P LSD LR +R TQ + + TGF + ++S++E K I +I Sbjct: 11 PELSDIELR----LGRRVSELRTARGYTQDRLASETGFTKGYLSKIENSKIIPPIGTLIK 66 Query: 69 LAHTLDTPLWKLL 81 +A L T L +LL Sbjct: 67 IAQALHTDLAELL 79 >gi|194467588|ref|ZP_03073575.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454624|gb|EDX43521.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 122 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 N R RK LTQ+++ + + +IS +E+ KS I+I + +A LD L L+ Sbjct: 8 GENIRRYRKLRGLTQEKLAEFSDLSVKFISMVESKKSQNISIQRLEKIADALDISLATLV 67 >gi|260903897|ref|ZP_05912219.1| helix-turn-helix domain-containing protein [Brevibacterium linens BL2] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R RK LT E+ R G +++ +S++E G+ ++ N + L+ L + +L Sbjct: 11 VFGARIRARRKYNDLTLNELAVRAGISRAALSKIERGEQDTSVSNAMGLSRALGVDVGEL 70 Query: 81 LKP 83 L P Sbjct: 71 LAP 73 >gi|163942236|ref|YP_001647120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013704|ref|ZP_04170833.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|229135335|ref|ZP_04264127.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|163864433|gb|ABY45492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228648124|gb|EEL04167.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228747626|gb|EEL97500.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 190 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|319946286|ref|ZP_08020526.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747668|gb|EFV99921.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 157 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 36/69 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +++ + ++ R + KLTQ+E+ R+ + +++ +E K ++++ ++ + L+ Sbjct: 50 VSVKKLSIGSQIKSYRIKLKLTQQELAERSELSLPFMNLVENDKRNLSVETLLKILDGLE 109 Query: 75 TPLWKLLKP 83 + P Sbjct: 110 ISPSEFFLP 118 >gi|87121237|ref|ZP_01077127.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121] gi|86163394|gb|EAQ64669.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121] Length = 186 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + R++ ++ EI + G A+S +S+LE+G +++ + L+ L P K Sbjct: 10 EIVAKALKRERRKLGVSMAEIARQAGIAKSTLSQLESGIGNPSLETLWALSIALQVPFSK 69 Query: 80 LLK 82 L++ Sbjct: 70 LIE 72 >gi|302533187|ref|ZP_07285529.1| transcriptional regulatory protein [Streptomyces sp. C] gi|302442082|gb|EFL13898.1| transcriptional regulatory protein [Streptomyces sp. C] Length = 198 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E T + R G ++ I ++E ++ ++ + LA L + LL Sbjct: 12 LARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 71 >gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + N +RKE ++Q+++ + + +S ETG+S ++D + LA T Sbjct: 9 KNTVGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQPDLDMLETLASAFGT 65 >gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC 27756] gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides T2-87] gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium 3_1_46FAA] Length = 223 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ I N + IRK + Q+E+ N+ G +S++E G + D + + L Sbjct: 5 EKKISFLGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64 Query: 76 PLWKLL 81 +LL Sbjct: 65 TPNELL 70 >gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing [Geobacter sulfurreducens KN400] Length = 181 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ NR + +IS+LE ++ +I + + + + Sbjct: 4 GERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQEFF 62 >gi|312976864|ref|ZP_07788613.1| putative transcriptional repressor [Lactobacillus crispatus CTV-05] gi|310896192|gb|EFQ45257.1| putative transcriptional repressor [Lactobacillus crispatus CTV-05] Length = 63 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R LTQ+++ + ++ IS +E G +++ I + LD L L P Sbjct: 1 MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWP 58 >gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202] gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202] Length = 110 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 +N + IRK A ++Q+E+ + +G +++ IS LE G+ + I+ ++ +A L + ++ Sbjct: 4 LGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQNNPQINTIVSIASNLGVSIEEI 63 Query: 81 L 81 + Sbjct: 64 I 64 >gi|134046605|ref|YP_001098090.1| transcriptional regulator [Methanococcus maripaludis C5] gi|132664230|gb|ABO35876.1| transcriptional regulator [Methanococcus maripaludis C5] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IRK L+ + N TG ++S + ++E G+ I ++ +++ L Sbjct: 6 EVISKNLKIIRKRKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTS 65 Query: 80 LLK 82 LLK Sbjct: 66 LLK 68 >gi|111018527|ref|YP_701499.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110818057|gb|ABG93341.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 115 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P S R ++ R R++ + +++ G ++ ++SE+E GK + + + Sbjct: 12 AAPEQSREEPLVRELYGRVLREARRDQDRSLEDVAAAVGMSKQYLSEIERGKKEPSSEML 71 Query: 67 IILAHTLDTPLWKLL 81 + L P+ LL Sbjct: 72 RAVCGALGLPVEHLL 86 >gi|301053958|ref|YP_003792169.1| transcriptional regulator [Bacillus anthracis CI] gi|300376127|gb|ADK05031.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 185 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ L Sbjct: 5 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 209 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R +D + + + + +RK L+ E+ ++G A+S IS++E ++ Sbjct: 11 GRPKDLVSGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + L+ LD + ++L Sbjct: 68 LTTIWRLSQALDVSIERVL 86 >gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22] gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22] gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4000] Length = 107 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ KLTQ ++ N G A++ S E G+ T +ID +A + L L Sbjct: 1 MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL 60 >gi|225866477|ref|YP_002751855.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225788695|gb|ACO28912.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 190 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|224539861|ref|ZP_03680400.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus DSM 14838] gi|224518510|gb|EEF87615.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus DSM 14838] Length = 103 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I + R +A LTQ+++ R G +++IS +E GK+ + + + + L Sbjct: 43 FILAERLKEERLKAGLTQEQLAERIGTKKTYISRIENGKADVQLSTLFRIFQGLGKQ 99 >gi|82592707|gb|ABB84523.1| DigR [Myxococcus xanthus] Length = 197 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +K+ +A L R I R+ RK +LT K++ RTG + S +S++E +S+ +I Sbjct: 119 QKKGLSQDPEADL-HRAI-GRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASI 176 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ +A L + +L Sbjct: 177 SSLYKIASALQLRMGELF 194 >gi|150018990|ref|YP_001311244.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905455|gb|ABR36288.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 183 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E +L+ ++ + G ++ + ++E G+S I+ + +A L P L Sbjct: 6 IIAGNLKRLRNERQLSLGKLSDICGVSKVMLGQIERGESNPTINTIWKIAGGLRVPYTSL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 209 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 ER+ R +RK LT ++ + ++S+LE G + ++ ++ Sbjct: 7 ATSVDDSPTGDERL--GARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLARPSMASL 64 Query: 67 IILAHTLDTPLWKLL 81 LA L T +L+ Sbjct: 65 ERLARALGTSRVELI 79 >gi|293610621|ref|ZP_06692921.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826965|gb|EFF85330.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123811|gb|ADY83334.1| DNA-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|283834661|ref|ZP_06354402.1| hypothetical protein CIT292_08868 [Citrobacter youngae ATCC 29220] gi|291069576|gb|EFE07685.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 MIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +T ++ TG ++S +S LE G+ ++ ++ LA T + PL L+ Sbjct: 13 VGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQRRPTLELLLPLARTYNVPLDDLV 72 >gi|54024079|ref|YP_118321.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015587|dbj|BAD56957.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 204 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ A L+ E+ + G +++ +S++E +++ ++ + LA LD P+ L + Sbjct: 20 ARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSLSTVARLAAGLDVPVTSLFR 79 >gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 209 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R +D + + + + +RK L+ E+ ++G A+S IS++E ++ Sbjct: 11 GRPKDLASGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + L+ LD + ++L Sbjct: 68 LATIWRLSQALDVSIERVL 86 >gi|146342719|ref|YP_001207767.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195525|emb|CAL79550.1| putative transcriptional regulator with a putative HTH DNA-binding domain [Bradyrhizobium sp. ORS278] Length = 225 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Query: 5 KRDEPHL-------SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 R EP L +A R +RK+ LT E+ G + +S++E G Sbjct: 18 PRQEPELLTGSMAPKEATPTLETEIGAEVRRLRKDLDLTVAELGAAAGISAGMMSKIENG 77 Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82 + ++ + LA L+ P+ +L + Sbjct: 78 SISPSLATLSALAKALNVPIARLFR 102 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R E LTQK++ G A S I + E+G I+ + +A LD P+ +LL Sbjct: 6 GDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64 >gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 107 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ KLTQ ++ N G A++ S E G+ T +ID +A + L L Sbjct: 1 MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL 60 >gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK K+ Q+E+ + G +S++E G + D + + L+ +LL Sbjct: 11 LGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLEKIMDVLEVTPNELL 70 >gi|311281644|ref|YP_003943875.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308750839|gb|ADO50591.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ EI R G A+S +S+LE+G +++ + L LD P +L Sbjct: 7 VIAKSLVRERMRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|295100881|emb|CBK98426.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 168 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK K+TQ+++ ++ + +I+ +E GK + D + + H L L ++ Sbjct: 59 LGKQIKAVRKAMKMTQEQLALKSNVSVKYIANIENGKQNPSFDILSSILHVLPLSLDSVI 118 Query: 82 KP 83 P Sbjct: 119 NP 120 >gi|255652577|ref|ZP_05399479.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 278 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N + RK+ ++TQ+++ + G ++ + E + N+D + LA LDT Sbjct: 4 GENIKTFRKDRRMTQEQLAEKAGISRVALGNYEREERVPNLDILEKLATALDTS 57 >gi|108757722|ref|YP_635287.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461602|gb|ABF86787.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 117 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R +R +LTQ+ + R+ + I +E G + ++D + L+ LD L L Sbjct: 18 FGDHVRKLRTARELTQEALAERSDLSVDAIRRIERGSFSPSLDTLGKLSKGLDVSLKTLF 77 Query: 82 K 82 + Sbjct: 78 Q 78 >gi|260905346|ref|ZP_05913668.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 112 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D L R + R R E LT ++ R+G + ++SE+E G + + + Sbjct: 8 DAYADRTPALLWREMLGRVLRLRRTELGLTLAQVSRRSGVSTQYLSEVERGLKDPSSEVI 67 Query: 67 IILAHTLDTPLWKLL 81 +A L L ++L Sbjct: 68 EAIAIVLGLALPQVL 82 >gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51] gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 134 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +RKE L+Q+++ ++ +S+ E+ ++ +D +I+L+ + L Sbjct: 4 MSFSEKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQAYPELDKLILLSDFFNISLDD 63 Query: 80 LLK 82 L+K Sbjct: 64 LIK 66 >gi|103487689|ref|YP_617250.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977766|gb|ABF53917.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 73 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F N+ R +R A +TQ E+ R G + I+ +E GK + +++ +AH PL + Sbjct: 6 FANDIRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGKPLEAV 65 Query: 81 LK 82 + Sbjct: 66 FQ 67 >gi|228935813|ref|ZP_04098625.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823870|gb|EEM69690.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 190 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|196034409|ref|ZP_03101818.1| DNA-binding protein [Bacillus cereus W] gi|195992951|gb|EDX56910.1| DNA-binding protein [Bacillus cereus W] Length = 190 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf] gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf] gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 189 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L + Sbjct: 6 GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65 >gi|73661492|ref|YP_300273.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494007|dbj|BAE17328.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 181 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 34/60 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + RK+ +L+ ++ N TG +++ +S++E G+S I + +A+ L L +L Sbjct: 7 IVAKNIADYRKKHQLSLDKVANATGVSKNMLSQIEKGQSNPTITTLWKIANGLHISLSQL 66 >gi|10954763|ref|NP_066698.1| hypothetical protein pRi1724_p118 [Agrobacterium rhizogenes] gi|10567427|dbj|BAB16236.1| hypothetical protein [Agrobacterium rhizogenes] Length = 62 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R IR +LTQ+E+ +RTG + + +E + + + + +A L +L+ Sbjct: 4 NMRRIRHGKQLTQEEVAHRTGLSVRHVGAIERAEMSATVTVLGQIAEALGVEPAELVT 61 >gi|119383208|ref|YP_914264.1| helix-turn-helix domain-containing protein [Paracoccus denitrificans PD1222] gi|119372975|gb|ABL68568.1| helix-turn-helix domain protein [Paracoccus denitrificans PD1222] Length = 84 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R A L+Q+E+ +R G + ++S LE+ + ++ + L L + + Sbjct: 10 EAFAKILRKQRTAAGLSQEELAHRAGVSMRYVSLLESRRHQPSLATIHGLCQGLGLSMVE 69 Query: 80 LL 81 L+ Sbjct: 70 LI 71 >gi|30264572|ref|NP_846949.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47530039|ref|YP_021388.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187395|ref|YP_030647.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65321870|ref|ZP_00394829.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165871491|ref|ZP_02216138.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635596|ref|ZP_02393908.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641686|ref|ZP_02399931.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688288|ref|ZP_02879498.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170708374|ref|ZP_02898818.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177653168|ref|ZP_02935455.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567021|ref|ZP_03019937.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196039163|ref|ZP_03106469.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218905729|ref|YP_002453563.1| DNA-binding protein [Bacillus cereus AH820] gi|227817285|ref|YP_002817294.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228929551|ref|ZP_04092570.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948227|ref|ZP_04110511.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124068|ref|ZP_04253260.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|229600477|ref|YP_002868785.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687007|ref|ZP_05150865.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724570|ref|ZP_05186353.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254736607|ref|ZP_05194313.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741645|ref|ZP_05199332.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254754757|ref|ZP_05206792.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254757589|ref|ZP_05209616.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301056014|ref|YP_003794225.1| DNA-binding protein [Bacillus anthracis CI] gi|30259230|gb|AAP28435.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505187|gb|AAT33863.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181322|gb|AAT56698.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164712788|gb|EDR18318.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510393|gb|EDR85794.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529016|gb|EDR91771.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126749|gb|EDS95632.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667794|gb|EDT18547.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081692|gb|EDT66763.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562012|gb|EDV15981.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196029790|gb|EDX68391.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218537131|gb|ACK89529.1| DNA-binding protein [Bacillus cereus AH820] gi|227005980|gb|ACP15723.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228659370|gb|EEL15018.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228811585|gb|EEM57922.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830130|gb|EEM75748.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229264885|gb|ACQ46522.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378183|gb|ADK07087.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 190 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 216 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 R++R++ ++ +++ R+G +++++S+LE ++D ++ +A L+ L +L Sbjct: 3 VGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVVLRIAAALEVDLAEL 62 Query: 81 LKP 83 + P Sbjct: 63 VGP 65 >gi|148544879|ref|YP_001272249.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|184154216|ref|YP_001842557.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227364019|ref|ZP_03848119.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|325683224|ref|ZP_08162740.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] gi|148531913|gb|ABQ83912.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|183225560|dbj|BAG26077.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227070941|gb|EEI09264.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|324977574|gb|EGC14525.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] Length = 293 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E +L+Q E+ R ++ +S+ E G + +ID +I+LA + L +L+ Sbjct: 5 FPHQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLI 64 >gi|157961107|ref|YP_001501141.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846107|gb|ABV86606.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 118 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + IRKE + Q E+ TG +Q +S LE GK+ I ID + ++ L + Sbjct: 10 LVGFELEKIRKELGMEQSEVSVATGISQPVLSRLEKGKAMITIDQLFVICGALGVKPEDI 69 Query: 81 L 81 + Sbjct: 70 I 70 >gi|126699269|ref|YP_001088166.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975298|ref|ZP_05271770.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092688|ref|ZP_05322166.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100793|ref|ZP_05329770.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306676|ref|ZP_05350847.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314426|ref|ZP_05356009.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517102|ref|ZP_05384778.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650208|ref|ZP_05397110.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683328|ref|YP_003214613.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686924|ref|YP_003218057.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520193|ref|ZP_07406540.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115250706|emb|CAJ68530.1| Transcriptional regulator, RmlC-type [Clostridium difficile] gi|260209491|emb|CBA63038.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212940|emb|CBE04210.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +R E L+ ++ +G ++ +S++E G S ++ + +A L+ P + Sbjct: 6 VIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAI 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065] Length = 92 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + +R+E + TQ+E+ ++ IS E+G +I N++ +A+ + L L Sbjct: 1 MFGDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIEPSISNLVKIANIFNVSLDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|291526368|emb|CBK91955.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291526813|emb|CBK92399.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 187 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+ ++ ++ +TG ++S ++++E G + +I + + L +L+ Sbjct: 8 VSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLI 67 Query: 82 KP 83 P Sbjct: 68 DP 69 >gi|283787426|ref|YP_003367291.1| DNA binding protein [Citrobacter rodentium ICC168] gi|282950880|emb|CBG90557.1| putative DNA binding protein [Citrobacter rodentium ICC168] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 MIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|257463085|ref|ZP_05627486.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317060684|ref|ZP_07925169.1| transcriptional regulator [Fusobacterium sp. D12] gi|313686360|gb|EFS23195.1| transcriptional regulator [Fusobacterium sp. D12] Length = 182 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R E L+ +E+ + + S++S++E GK++ +I+N+ +A LD + Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|238922527|ref|YP_002936040.1| hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656] gi|238874199|gb|ACR73906.1| Hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656] Length = 189 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+ ++ ++ +TG ++S ++++E G + +I + + L +L+ Sbjct: 10 VSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLI 69 Query: 82 KP 83 P Sbjct: 70 DP 71 >gi|229098961|ref|ZP_04229896.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|229105128|ref|ZP_04235779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228678309|gb|EEL32535.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228684459|gb|EEL38402.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 190 Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|332981126|ref|YP_004462567.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698804|gb|AEE95745.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 121 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++IRK+ LT + + + S+I+++E+G+S ++D + LA L+ + Sbjct: 2 ESIGAKLKSIRKQRGLTLRALGKAANVSHSFIADIESGRSNPSLDTLDALAKALNVSITD 61 Query: 80 LLK 82 +++ Sbjct: 62 IIR 64 >gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus DSM 2032] Length = 436 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L R + +RK+ L+QKE+ + G S IS++E ++ + LA +L Sbjct: 250 LPGRFDLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLSI 309 >gi|303326710|ref|ZP_07357152.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302862698|gb|EFL85630.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 89 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A L+Q+++ +R G +S++S LE G N++ +I +A +L+ +LL Sbjct: 24 LRRYRDAAGLSQRQLADRVGITKSYVSSLELGYRAPNLNLLIKIARSLEVRPGELL 79 >gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 146 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +Q+++ + G + I + E KS +IDN+I+L+ + L +L+ Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229019722|ref|ZP_04176528.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229025948|ref|ZP_04182338.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228735349|gb|EEL85954.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228741567|gb|EEL91761.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|239814988|ref|YP_002943898.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801565|gb|ACS18632.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 101 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 37/74 (50%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 S + R + F + R +R + +T +++ G +++ +E G+ +++ N+ Sbjct: 14 SVSSKELERLQQAFGEHLRALRHDRLITIEQLAELAGLHPNYVGSVERGERNLSLFNIWR 73 Query: 69 LAHTLDTPLWKLLK 82 LA L+ + +L++ Sbjct: 74 LAGGLEVSVSQLVE 87 >gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis] Length = 107 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 100 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + IR L ++ + G ++S LE G +I+ + + L L + Sbjct: 4 GHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKIPSIETLQKICDALGITLSEFF 62 >gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 251 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R IR L+Q+ + + E G+S ID +I +A+ P+ LL Sbjct: 4 FGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTIIKIANYFSIPIDDLL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 193 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +TQKE+ + + IS+ ET K +I + LA L L +L Sbjct: 6 GNTIRTLRIKHGITQKELAEKLNVSDKTISKWETEKGLPDISIVEELAKALHVSLTELFT 65 >gi|312870378|ref|ZP_07730503.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094079|gb|EFQ52398.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 126 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R+ A L+Q+++ ++ ++ IS+ E G + +I+ +I +A L L +L+ Sbjct: 4 FQQQLTKLRQAAGLSQEQLADQLHVSRQAISKWENGSALPDIEKIIQIASILHVSLDELV 63 >gi|228941681|ref|ZP_04104228.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974608|ref|ZP_04135174.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981203|ref|ZP_04141503.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228778403|gb|EEM26670.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228785011|gb|EEM33024.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817893|gb|EEM63971.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 194 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77 Query: 80 LL 81 L+ Sbjct: 78 LM 79 >gi|118586301|ref|ZP_01543755.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118433264|gb|EAV39976.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 122 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R + L+QK++ + ++ IS+ E+G++T +++N+I L+ LD L L+ Sbjct: 4 FPEQLKKYRNKKNLSQKDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLV 63 >gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp] gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp] Length = 240 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +RK ++Q+ + G+ +QS I E ++ +++++A L L Sbjct: 2 ETLGQRLKRLRKAKGMSQQALAEECGWASQSRIGNYEADLRAPSLSDLLLIAPALGVSLA 61 Query: 79 KL 80 +L Sbjct: 62 EL 63 >gi|108761825|ref|YP_633731.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465705|gb|ABF90890.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 222 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +K+ +A L R I R+ RK +LT K++ RTG + S +S++E +S+ +I Sbjct: 144 QKKGLSQDPEADL-HRAI-GRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASI 201 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ +A L + +L Sbjct: 202 SSLYKIASALQLRMGELF 219 >gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 476 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ ++ R +R+E LTQ E+ R + S+++++E + T+ ++ LA L Sbjct: 4 DKKLYAHAKLRRLRREHGLTQAELARRLDISTSYLNQIENSQRTLTAPILLRLAKVLGVD 63 Query: 77 LWK 79 Sbjct: 64 PEH 66 >gi|300312210|ref|YP_003776302.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074995|gb|ADJ64394.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 96 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + L+Q + + + S++S LE K + + +A L P+ L Sbjct: 3 LGSAIQLCRVKQGLSQSALAEKANCSVSYLSMLENSKRDPTLSTIKSIAGALGVPIEILF 62 >gi|298368962|ref|ZP_06980280.1| DNA-binding protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282965|gb|EFI24452.1| DNA-binding protein [Neisseria sp. oral taxon 014 str. F0314] Length = 95 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 11 LSDAILRE---RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 L D + E R + N R R +Q+E+ + G +++IS +E + + + N+ Sbjct: 7 LPDTLPDEHDLRAVLAYNMRVFRVGKGWSQEELARQCGLDRTYISAVERKRWNVALSNIE 66 Query: 68 ILAHTLDT 75 +A L Sbjct: 67 KIAIALQI 74 >gi|296110945|ref|YP_003621326.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] gi|295832476|gb|ADG40357.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU 11154] Length = 91 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 36/77 (46%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D LS N + R + ++Q + + +Q +S ETGK +IDN+ Sbjct: 10 DNKILSQISGGASKDIQYNLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNL 69 Query: 67 IILAHTLDTPLWKLLKP 83 I L++ L T + +L+ P Sbjct: 70 IKLSNILQTSVPELIAP 86 >gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 207 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R +RK T ++ + G A+S +S++E G+ + D + LA L+ Sbjct: 22 PEPLDLGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAQGLEIS 81 Query: 77 LWKLLKP 83 + +L P Sbjct: 82 VPQLFTP 88 >gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK ++ + G +Q IS+ E GK I+ + + +A L+ P+ LL Sbjct: 6 GKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPMDTLL 64 >gi|319440538|ref|ZP_07989694.1| putative DNA-binding protein [Corynebacterium variabile DSM 44702] Length = 221 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 39/82 (47%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + D+P + + R +R ++ + R G +++ +S++E +++ Sbjct: 7 IPDHELDDPQSPVEDHSIEVGLGHRVRALRTSRGMSVAALSERAGLSKAMLSKIENAQTS 66 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 ++ ++ LA LD P+ L + Sbjct: 67 CSLTSVAHLAAALDVPVATLFQ 88 >gi|312138107|ref|YP_004005443.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887446|emb|CBH46758.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 182 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ A LT + + TG +S++S++E G +T +I + +A LD + +L Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGINTPSIAVALKIARALDADVSQLF 60 >gi|291561683|emb|CBL40482.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 68 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +I NN + +R E KL+Q + G +++ IS +ETG+ +IL LD Sbjct: 3 DELILKNNLKQVRTEKKLSQSALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 209 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R +D + + + + +RK L+ E+ ++G A+S IS++E ++ Sbjct: 11 GRPKDLVSGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + L+ LD + ++L Sbjct: 68 LATIWRLSQALDVSIERVL 86 >gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145] Length = 107 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +F + IRK+ KLTQ+E+ ++G + IS +E G +++N L L+ Sbjct: 6 DSELFCARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNVSA 65 Query: 78 WKLL 81 LL Sbjct: 66 DYLL 69 >gi|256844059|ref|ZP_05549546.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256613964|gb|EEU19166.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] Length = 68 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R LTQ+++ + ++ IS +E G +++ I + LD L L P Sbjct: 5 RMKAARAGKDLTQEDLAQKVDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWP 63 >gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] Length = 270 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RKE +Q+++ ++ +S+ E+G+ ++ +I L+ L L +L+ Sbjct: 3 FAQKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELLGISLDELM 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|116334877|ref|YP_796403.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100224|gb|ABJ65372.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 254 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +R+++ LTQ+ + + + +S ETGK+ N++ + L+ + L K Sbjct: 1 MSFKEDIKTLRRQSNLTQEALAQQLHVTRQTVSTWETGKNMPNLETLHALSQLFNISLEK 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|296139160|ref|YP_003646403.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027294|gb|ADG78064.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 83 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+E L+Q+ + G +++ ++E G+ + ++N++ LAH L+T LL Sbjct: 16 FGRRVRARREELGLSQEAAAIQIGVHWTYLGQVERGQRSARVENILKLAHGLNTTPGALL 75 >gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] Length = 189 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R KLT KE+ RT + ++S+LE G +T+ ID++ +A LD L + Sbjct: 6 GKKIKKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNLTYFFQ 65 >gi|194467173|ref|ZP_03073160.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454209|gb|EDX43106.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 293 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E +L+Q E+ R ++ +S+ E G + +ID +I+LA + L +L+ Sbjct: 5 FPHQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLI 64 >gi|49478671|ref|YP_038556.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140999|ref|YP_085831.1| DNA-binding protein [Bacillus cereus E33L] gi|229093600|ref|ZP_04224701.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|49330227|gb|AAT60873.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974468|gb|AAU16018.1| DNA-binding protein [Bacillus cereus E33L] gi|228689809|gb|EEL43615.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|42783677|ref|NP_980924.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206975999|ref|ZP_03236909.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217961988|ref|YP_002340558.1| DNA-binding protein [Bacillus cereus AH187] gi|228987754|ref|ZP_04147865.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141235|ref|ZP_04269774.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26] gi|229158112|ref|ZP_04286181.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|229198653|ref|ZP_04325354.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|42739606|gb|AAS43532.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206745751|gb|EDZ57148.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066549|gb|ACJ80799.1| DNA-binding protein [Bacillus cereus AH187] gi|228584812|gb|EEK42929.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228625341|gb|EEK82099.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228642276|gb|EEK98568.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26] gi|228772028|gb|EEM20483.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324328397|gb|ADY23657.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|260550240|ref|ZP_05824453.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406768|gb|EEX00248.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 182 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ RK LTQ ++ + G +QS ++ +E G +++D + ++ LD+ L KP Sbjct: 19 IRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLNRVSEALDSEFVTLGKP 76 >gi|228958693|ref|ZP_04120408.1| hypothetical protein bthur0005_21950 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800986|gb|EEM47888.1| hypothetical protein bthur0005_21950 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 204 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|229044173|ref|ZP_04191852.1| hypothetical protein bcere0027_22090 [Bacillus cereus AH676] gi|228725157|gb|EEL76435.1| hypothetical protein bcere0027_22090 [Bacillus cereus AH676] Length = 204 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|255693490|ref|ZP_05417165.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260620682|gb|EEX43553.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 181 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 20 MIFVNN----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 IF+ N R R+ +Q+ + G + S IS++ETGK+ D + + LD Sbjct: 71 FIFMENIGTMLRKQRELKGFSQEYVAGLVGVSTSVISKIETGKTKARFDVISNICKALDM 130 Query: 76 PLWKLLKP 83 + LL P Sbjct: 131 NWYDLLSP 138 >gi|218289525|ref|ZP_03493753.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240393|gb|EED07575.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F R +RKE LT ++ +G + + IS +E G+ D + LA L P L Sbjct: 4 FGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPYEDL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|183601133|ref|ZP_02962626.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] gi|188019477|gb|EDU57517.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] Length = 131 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP+ K D S + +RKE +T K++ +Q IS E G Sbjct: 8 MPKNKLD---DSRTVFT--KAIGKEIHKLRKERSMTGKDLAKLVNVSQQQISRYECGVCN 62 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I ID +I++ + LD L Sbjct: 63 ITIDTLIVILNALDVSLTDFF 83 >gi|184153646|ref|YP_001841987.1| hypothetical protein LAR_0991 [Lactobacillus reuteri JCM 1112] gi|227364982|ref|ZP_03849023.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|325681705|ref|ZP_08161225.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] gi|183224990|dbj|BAG25507.1| hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227069993|gb|EEI08375.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3] gi|324979017|gb|EGC15964.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri MM4-1A] Length = 266 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + L E+ NN RK+ +TQKE+ + G + +ISE E G I I+ Sbjct: 72 KAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIET 131 Query: 66 MIILAHTLDTPLWKLL 81 + L+ L + LL Sbjct: 132 LKKLSEALGSEASYLL 147 >gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] Length = 107 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|75762955|ref|ZP_00742756.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489557|gb|EAO52972.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 204 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1] Length = 65 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L + + P Sbjct: 2 NRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGKSVESIFGP 61 >gi|255316576|ref|ZP_05358159.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 120 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + +TQ+ I N S +S +ETGK+ +++ +I +A+ L + Sbjct: 6 KALGKRIKIARIKKGITQESIANEIDITPSHLSNVETGKTKVSLPTLIDIANALSINIDS 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|222097971|ref|YP_002532028.1| DNA-binding protein [Bacillus cereus Q1] gi|221242029|gb|ACM14739.1| DNA-binding protein [Bacillus cereus Q1] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|254510314|ref|ZP_05122381.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] gi|221534025|gb|EEE37013.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] Length = 211 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL Sbjct: 39 RLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 95 >gi|210622425|ref|ZP_03293157.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] gi|210154241|gb|EEA85247.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] Length = 66 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R +TQK++ + G + IS +E G I+ I + L L +L Sbjct: 6 KIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDELF 62 >gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 181 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RK L+ +E+ S +S++E G + +I + +LA TLD P Sbjct: 2 ENIDIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKVLAKTLDVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] Length = 253 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ F +R+E LTQKE+ R + +S+ E G S ++ ++ +A L + Sbjct: 5 DKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLSLPDVGLLLPMADCLGVTV 64 Query: 78 WKLLK 82 +LL+ Sbjct: 65 TELLR 69 >gi|328949069|ref|YP_004366406.1| hypothetical protein Tresu_2240 [Treponema succinifaciens DSM 2489] gi|328449393|gb|AEB15109.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 107 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF N + RK++ ++Q++ + + + +S +ETG + + + D Sbjct: 7 RKIFGENVKYYRKKSGMSQEQFAEKLEISPNHLSVIETGGKFVTYKLLERIVAAFDVMPA 66 Query: 79 KLL 81 L Sbjct: 67 ALF 69 >gi|299134081|ref|ZP_07027274.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590828|gb|EFI51030.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 230 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK + T + G + ++S++ETG+ T + + LA L T L L+ Sbjct: 43 LGRRIRQLRKMQERTLDSLAQEVGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 102 Query: 82 K 82 + Sbjct: 103 E 103 >gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 106 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK +TQ ++ G + + I +E G + +A L + +L Sbjct: 4 FGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEELC 63 Query: 82 KP 83 P Sbjct: 64 GP 65 >gi|169828385|ref|YP_001698543.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992873|gb|ACA40413.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 194 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK +++ +E+ + + ++ + ++E G++ ++ + + L PL LL Sbjct: 22 VGMNLREIRKNKRMSLEELASVSNVSKLTLGKIERGETNPTVNILWKICRGLHIPLISLL 81 >gi|166363190|ref|YP_001655463.1| hypothetical protein MAE_04490 [Microcystis aeruginosa NIES-843] gi|166085563|dbj|BAG00271.1| hypothetical protein MAE_04490 [Microcystis aeruginosa NIES-843] Length = 82 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R ++Q+E+ R +++IS LE G ++ ++ LA L+ + +LL+ Sbjct: 16 IREHRAALGISQEELGLRCHLDRTYISGLERGVRNPSLTALVTLAKGLNITVSQLLE 72 >gi|297567303|ref|YP_003686275.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851752|gb|ADH64767.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 130 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R E K++ ++G + ++S+LE G++ +++ + LA T + Sbjct: 1 MTLAERLRELRSERGWRLKDLSEQSGLSVPYLSDLERGRTNPSLETLNTLARTYAMSVQD 60 Query: 80 LLKP 83 LL+P Sbjct: 61 LLEP 64 >gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 189 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L + Sbjct: 6 GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65 >gi|160893483|ref|ZP_02074268.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] gi|156864878|gb|EDO58309.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] Length = 122 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 IR LTQ ++ + S +E GKS+++++ MI L + L L++ Sbjct: 16 GQRIVQIRHANNLTQYQLAEMLDISVKHCSAIERGKSSLSLEKMIDLCDIFNIDLDYLIR 75 >gi|148544266|ref|YP_001271636.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531300|gb|ABQ83299.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 264 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + L E+ NN RK+ +TQKE+ + G + +ISE E G I I+ Sbjct: 70 KAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIET 129 Query: 66 MIILAHTLDTPLWKLL 81 + L+ L + LL Sbjct: 130 LKKLSEALGSEASYLL 145 >gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 184 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++R+ LTQ+E+ +R + +IS+LE G + +++ ++ + L + K Sbjct: 11 GRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEILGSNPADFFK 70 >gi|290956167|ref|YP_003487349.1| hypothetical protein SCAB_16491 [Streptomyces scabiei 87.22] gi|260645693|emb|CBG68784.1| putative WD-40 repeat protein [Streptomyces scabiei 87.22] Length = 1298 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 ++ D H D + F R +R+E L+ ++ RT +++ ++S++ETG Sbjct: 7 GQQTDPHHGRDRDAPTTLSFPAQLRRLRQERGLSLTDLARRTHYSKGYLSKIETGAKRPT 66 Query: 63 IDNMIILAHTLDTPLWKLLK 82 +D + L + +LL+ Sbjct: 67 VD-VARLCDQVLGAEGELLR 85 >gi|255262954|ref|ZP_05342296.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105289|gb|EET47963.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 16 LRER-MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER + R +RK LT ++ + W+S++E G S ++ ++ LA LD Sbjct: 5 QPERVRTLGADLRALRKARGLTLVDLAETLDRSVGWLSQVERGMSEPSVTDLRHLAAALD 64 Query: 75 TPLWKLLK 82 + L + Sbjct: 65 VSVSSLFR 72 >gi|237728009|ref|ZP_04558490.1| XRE family transcriptional regulator [Citrobacter sp. 30_2] gi|226910266|gb|EEH96184.1| XRE family transcriptional regulator [Citrobacter sp. 30_2] Length = 182 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R+ L+ EI R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 MIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|160932607|ref|ZP_02079997.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753] gi|156868566|gb|EDO61938.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753] Length = 83 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R++ ++Q+ + + G ++ +S +E G+ ++ L+ L Sbjct: 5 ETVGAAIRQVREKKGISQEVVSSFAGIGRTHLSAIERGQRKPTLETFFRLSEALGMAASD 64 Query: 80 LLK 82 L++ Sbjct: 65 LMR 67 >gi|257452737|ref|ZP_05618036.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|257466598|ref|ZP_05630909.1| MerR family transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|315917753|ref|ZP_07913993.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|317059278|ref|ZP_07923763.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313684954|gb|EFS21789.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313691628|gb|EFS28463.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] Length = 182 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R E L+ +E+ + + S++S++E GK++ +I+N+ +A LD + Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 150 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +RKE KLTQKE+ QS IS E+ K ++D M+ +A D P+ +L+ Sbjct: 4 FGDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQELI 63 >gi|56752065|ref|YP_172766.1| transcription regulator [Synechococcus elongatus PCC 6301] gi|81300847|ref|YP_401055.1| transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687024|dbj|BAD80246.1| transcription regulator [Synechococcus elongatus PCC 6301] gi|81169728|gb|ABB58068.1| transcriptional regulator, XRE family with cupin sensor domain [Synechococcus elongatus PCC 7942] Length = 230 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LT E+ + G ++ +S++E +++ +++ + L L L L Sbjct: 25 LGNTIRELRQRHDLTIAEVSQKAGISRGMLSKIENAQTSASLETLERLVSVLGVSLSALF 84 Query: 82 K 82 K Sbjct: 85 K 85 >gi|51894099|ref|YP_076790.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857788|dbj|BAD41946.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 196 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R R + +T +E+ R+G ++ ++ +LE K++ ++ + L+ L P+ Sbjct: 8 MSLGHRIRQTRTQKGITLQELAERSGLSKGFLCQLENDKASPSLQALDRLSAGLGVPVAL 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + D + + LD +LL Sbjct: 6 LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNELL 65 >gi|229062058|ref|ZP_04199383.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228717210|gb|EEL68885.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 35/59 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + ++A+ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62 >gi|229163492|ref|ZP_04291443.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228620061|gb|EEK76936.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|229169105|ref|ZP_04296820.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228614333|gb|EEK71443.1| Transcriptional regulator, MerR [Bacillus cereus AH621] Length = 181 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 35/59 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + ++A+ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62 >gi|168704437|ref|ZP_02736714.1| hypothetical protein GobsU_33184 [Gemmata obscuriglobus UQM 2246] Length = 239 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R RK LT + +RTG + ++S++E GK++ +I+ + + L + Sbjct: 171 KEALGAAIRERRKALSLTLSNMSDRTGVSLGYLSQIELGKNSASIETLYRICLALGMKMS 230 Query: 79 KLLK 82 +L + Sbjct: 231 ELFQ 234 >gi|149915490|ref|ZP_01904017.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149810779|gb|EDM70620.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 215 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R H +D + + R +RK LT ++ + G + W+S++E S Sbjct: 19 PTESRHRMHQTDISRAQ--TLGADLRALRKARGLTLADLADSLGRSVGWLSQVERDLSEP 76 Query: 62 NIDNMIILAHTLDTPLWKLL 81 +I ++ +A L P+ L Sbjct: 77 SISDLRQIAEQLGVPMSLLF 96 >gi|51893919|ref|YP_076610.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857608|dbj|BAD41766.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 222 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 R + L +++ ++G A +IS+LE G K ID + LA L + LL Sbjct: 2 GERLAWARNQQGLILQQVSEKSGLAVGYISQLEKGAKVNPTIDALGRLAKALGVSIAFLL 61 >gi|148253455|ref|YP_001238040.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405628|gb|ABQ34134.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 225 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA R +RK+ LT E+ G + +S++E G + ++ + LA Sbjct: 33 DATPTLESEIGAEVRRLRKDLDLTVSELGAAAGISAGMLSKIENGSISPSLATLSALAKA 92 Query: 73 LDTPLWKLLK 82 L+ P+ +L + Sbjct: 93 LNVPIARLFR 102 >gi|75762636|ref|ZP_00742481.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895748|ref|YP_002444159.1| DNA-binding protein [Bacillus cereus G9842] gi|228899378|ref|ZP_04063640.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228963794|ref|ZP_04124935.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|74489883|gb|EAO53254.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542527|gb|ACK94921.1| DNA-binding protein [Bacillus cereus G9842] gi|228795939|gb|EEM43406.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860284|gb|EEN04682.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 66 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L +L Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNELF 61 >gi|332298496|ref|YP_004440418.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181599|gb|AEE17287.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 106 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++I +N R +R+E TQ + G +++ +E+G+ +++D + L+ D P Sbjct: 5 KIIVGDNIRRLRREYGWTQAYVAENLGVTAPFLTMIESGQRGMSLDLIEKLSELFDVP 62 >gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 104 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK A LTQ E+ +TGF IS ETG T +++ + +LA+ LD L Sbjct: 10 IRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQL 61 >gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 194 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +T + TG ++S +S LE+G N++ ++ LA PL +L+ Sbjct: 14 VGPRLRELRRQRNVTLARLAEATGISESTLSRLESGARRPNLELLLPLAKVYGVPLDELV 73 >gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + +R+ +L+ +E+ S +S++E G + +I + +LA L+ P Sbjct: 2 ENINIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKLLAKALEVPT 61 Query: 78 WKLL 81 + L Sbjct: 62 FSFL 65 >gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] Length = 228 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +N RK K+TQKE+ R G + IS E G + D + +A LD + Sbjct: 7 KYVGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQALDISIND 66 Query: 80 LLKP 83 L P Sbjct: 67 LFPP 70 >gi|229169229|ref|ZP_04296943.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228614295|gb|EEK71406.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 190 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +++ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|209883861|ref|YP_002287718.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209872057|gb|ACI91853.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 208 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK + T + G + ++S++ETG+ T + + LA L T L L+ Sbjct: 20 LGRRIRQLRKMQERTLDSLATEIGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 79 Query: 82 K 82 + Sbjct: 80 E 80 >gi|169335543|ref|ZP_02862736.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis DSM 17244] gi|169258281|gb|EDS72247.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ LTQ+ + + S +S +E G + +++ + +A L+ L LL Sbjct: 12 LGGKIKKARQKENLTQETLAEILDLSASHLSHVENGLAKVSLPTIYSIAKILNVSLDNLL 71 >gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +R+ LT E G ++ ++S++E G++T +I +++ +A L + Sbjct: 16 GNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRATPSITSLVGIARALGVTM 70 >gi|310780515|ref|YP_003968847.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309749838|gb|ADO84499.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 178 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LT K++ + TG + +IS +E +++ ++ N+ + L L ++L Sbjct: 4 LGEKIKFCRKEKGLTLKKLSDMTGLSVGFISNIERNQNSPSVSNLQQICAALSINLMEIL 63 Query: 82 K 82 + Sbjct: 64 Q 64 >gi|229109859|ref|ZP_04239443.1| hypothetical protein bcere0018_21200 [Bacillus cereus Rock1-15] gi|228673611|gb|EEL28871.1| hypothetical protein bcere0018_21200 [Bacillus cereus Rock1-15] Length = 185 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|297565166|ref|YP_003684138.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849615|gb|ADH62630.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 187 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R T +++ R+G +S+IS LE + ++ +++ + L Sbjct: 6 SPPPSFPIGQRLRATRLAKGFTLEQVAKRSGLDKSFISRLERDATAASVASLLKVCGALG 65 Query: 75 TPLWKLLKP 83 L P Sbjct: 66 IQPGSLFDP 74 >gi|212694682|ref|ZP_03302810.1| hypothetical protein BACDOR_04213 [Bacteroides dorei DSM 17855] gi|212663183|gb|EEB23757.1| hypothetical protein BACDOR_04213 [Bacteroides dorei DSM 17855] Length = 67 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+A +TQ ++ + G +S+IS +ETGK+ + +A L Sbjct: 7 GQIIEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 58 >gi|169634707|ref|YP_001708443.1| hypothetical protein ABSDF3388 [Acinetobacter baumannii SDF] gi|169794401|ref|YP_001712194.1| hypothetical protein ABAYE0206 [Acinetobacter baumannii AYE] gi|213159023|ref|YP_002321021.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215481956|ref|YP_002324138.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|260556833|ref|ZP_05829050.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|301345186|ref|ZP_07225927.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510677|ref|ZP_07235914.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301595815|ref|ZP_07240823.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332854786|ref|ZP_08435549.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868898|ref|ZP_08438475.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332872792|ref|ZP_08440757.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|169147328|emb|CAM85189.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|169153499|emb|CAP02656.1| conserved hypothetical protein [Acinetobacter baumannii] gi|193078630|gb|ABO13673.2| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213058183|gb|ACJ43085.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213989083|gb|ACJ59382.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|260409439|gb|EEX02740.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|332727788|gb|EGJ59192.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733046|gb|EGJ64247.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332738953|gb|EGJ69815.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 182 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|291545628|emb|CBL18736.1| Helix-turn-helix [Ruminococcus sp. SR1/5] gi|295108458|emb|CBL22411.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 119 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + +E +F F+N R E KLT +E+ + + ++ E+E G + + L Sbjct: 1 MPKQTDKELGLF---FKNARHEQKLTYEELAEKAEMSSRYLKEIENGGRVPSFHKIRKLV 57 Query: 71 HTLDTPLWKLLKP 83 L+ P L P Sbjct: 58 RALNVPPEPLFYP 70 >gi|302546828|ref|ZP_07299170.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302464446|gb|EFL27539.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 102 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 13 DAILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 DA ++ + + R+ ++Q+ + G +Q+ I+++E G ST ID M Sbjct: 12 DAAPPDKTTTHTWGAFLKRARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAY 71 Query: 70 AHTLDTPL 77 L L Sbjct: 72 ITALGGEL 79 >gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 209 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R +D + + + + +RK L+ E+ ++G A+S IS++E ++ Sbjct: 11 GRPKDLVSGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + L+ LD + ++L Sbjct: 68 LATIWRLSQALDVSIERVL 86 >gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 188 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL+ Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 >gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168] gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168] Length = 200 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RKE LT +E+ N+ + S ++ E G+ T ++D ++++A + LL Sbjct: 4 FGQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGERTPSLDKLLLIADFFNVSTDYLL 63 >gi|330966069|gb|EGH66329.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 189 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 32/74 (43%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + +N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVVFSDLIQ 75 >gi|228917142|ref|ZP_04080700.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842560|gb|EEM87650.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 190 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 189 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L + Sbjct: 6 GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65 >gi|108805694|ref|YP_645631.1| MerR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766937|gb|ABG05819.1| transcriptional regulator, MerR family [Rubrobacter xylanophilus DSM 9941] Length = 292 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +A+ T KE+ TG + S+IS LE G S ++ ++ LA + +L Sbjct: 119 GERLRRLRVKARKTLKEVSEATGLSISFISALERGGSGASVASLRRLAEAYGVTMRELF 177 >gi|90417956|ref|ZP_01225868.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] gi|90337628|gb|EAS51279.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] Length = 193 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R L+ K++ G ++S +S++ETG+ + + L L + L Sbjct: 12 VGRKLRHMRNLHNLSLKQLAATVGCSESMLSKVETGRVNPTLTMLRKLVDALGINIAFLF 71 Query: 82 KP 83 +P Sbjct: 72 EP 73 >gi|86751755|ref|YP_488251.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574783|gb|ABD09340.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris HaA2] Length = 305 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +++K + +G ++ +I++LE+GK ++I + ++ L TPL LL Sbjct: 15 LGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRVSDALATPLEDLL 74 >gi|75764075|ref|ZP_00743675.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903022|ref|ZP_04067161.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74488436|gb|EAO52052.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856615|gb|EEN01136.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 194 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77 Query: 80 LL 81 L+ Sbjct: 78 LM 79 >gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 189 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L + Sbjct: 6 GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65 >gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 189 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R KLT KE+ +T + ++S+LE G +T+ ID++ +A LD L + Sbjct: 6 GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65 >gi|67459679|ref|YP_247303.1| Phage-related transcriptional regulator [Rickettsia felis URRWXCal2] gi|67005212|gb|AAY62138.1| Phage-related transcriptional regulator [Rickettsia felis URRWXCal2] Length = 119 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 16 LRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L ++++ N + R+ L+Q+++ + G + +IS +E G ID + L+ L+ Sbjct: 54 LVQKILNGENPIKVYREYRGLSQEQLAIKIGKTKQYISFIEKGLRKGTIDTLKKLSTVLN 113 Query: 75 TPLWKL 80 L L Sbjct: 114 VDLDML 119 >gi|300311649|ref|YP_003775741.1| hypothetical protein Hsero_2334 [Herbaspirillum seropedicae SmR1] gi|300074434|gb|ADJ63833.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 105 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R+ D LS A++ F R +R+ +Q+ + + +S+I E+E G + Sbjct: 7 PARQADVEALSSALV---QSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIA 63 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + LA L L+ Sbjct: 64 SLVTVEKLATALTLSPSALVT 84 >gi|255009477|ref|ZP_05281603.1| hypothetical protein Bfra3_10082 [Bacteroides fragilis 3_1_12] gi|313147247|ref|ZP_07809440.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313136014|gb|EFR53374.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 103 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R+ RK+ K+TQ+E+ + G A+S+I+ +E G++ I I + +A L Sbjct: 43 YGEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGIE 97 >gi|169335193|ref|ZP_02862386.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] gi|169257931|gb|EDS71897.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] Length = 120 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ TQ+ + + S +S +E+G + I++ ++ +A TL+ L LL Sbjct: 8 VGGKIKEARKKQGYTQETLAEIIDLSASHLSHVESGIAKISLPTIVAIAKTLNVSLDDLL 67 >gi|47568826|ref|ZP_00239520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228983895|ref|ZP_04144089.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154395|ref|ZP_04282515.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|229159774|ref|ZP_04287782.1| Transcriptional regulator [Bacillus cereus R309803] gi|229171478|ref|ZP_04299062.1| Transcriptional regulator [Bacillus cereus MM3] gi|47554502|gb|EAL12859.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228612016|gb|EEK69254.1| Transcriptional regulator [Bacillus cereus MM3] gi|228623711|gb|EEK80529.1| Transcriptional regulator [Bacillus cereus R309803] gi|228629219|gb|EEK85926.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|228775874|gb|EEM24246.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324735|gb|ADY19995.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 66 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R E LTQK++ G A S I + E+G I+ + +A LD P+ +LL Sbjct: 6 GDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64 >gi|326942288|gb|AEA18184.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 190 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 118 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF R R L+Q + + G + +S E+G + DN+ LA LD Sbjct: 8 EIFSKRLREARDLRGLSQALLAAKAGLPPASVSHFESGPRKPSFDNLKALAKALDVTTDY 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 204 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R E L+ E+ RTG + +S++E G S++ + + LA LD L Sbjct: 21 LVGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSSLRVRVIWPLAAALDVEPSAL 80 Query: 81 L 81 + Sbjct: 81 I 81 >gi|205375249|ref|ZP_03228039.1| putative DNA-binding protein [Bacillus coahuilensis m4-4] Length = 212 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 M F + +RKE ++Q+E+ ++G + + IS +ETG I+ D + +A L+ Sbjct: 1 MSFGEYLKQLRKEKSISQRELAEKSGVSNAEISRIETGGRQKISPDVLRAIAPILEISYE 60 Query: 79 KLL 81 +L+ Sbjct: 61 ELM 63 >gi|167034149|ref|YP_001669380.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860637|gb|ABY99044.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 271 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R++R++A L+Q ++ G +Q +S +ETG++ + + L L PL Sbjct: 18 GQHLRHLRRQASLSQLDLALLAGLSQRHLSCVETGRARASPSTLHALLSALGAPL 72 >gi|307947017|ref|ZP_07662352.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770681|gb|EFO29907.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 207 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 10 HLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++ ER R+ RK+ +T E+ T + +S++E G ++ ++ Sbjct: 6 QDPHSVREEREKVLEVAIGRKVRSFRKQRGITVAELSKLTDLSVGMLSKIENGNTSPSLT 65 Query: 65 NMIILAHTLDTPLWKLLK 82 + L+ L PL L K Sbjct: 66 TLQNLSRALSVPLTALFK 83 >gi|110678167|ref|YP_681174.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109454283|gb|ABG30488.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 82 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RK A L+Q+E+ RT + S+IS LET + + M + L L + Sbjct: 10 EAYARVLRERRKAANLSQEELAFRTDLSMSYISFLETCRRQPTLTVMDAICRELGVSLTE 69 Query: 80 LL 81 + Sbjct: 70 FI 71 >gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 102 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 E I + R +A +TQ+++ + G +S+IS +E G + I + + + L Sbjct: 38 EAFIIGERLKAERLKAGMTQEQLAAKIGTKKSYISRIENGHADIQLSTLFKIFQGLG 94 >gi|295106074|emb|CBL03617.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 98 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 1 MPRRKRDEPHLSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 MP + R L L + + F N R +R+ LT+KE+ + G ++S I+++E G Sbjct: 1 MPEKSRQAKMLGKDPLVQLLARTFGENVRVLRESQHLTKKELADMVGSSRSHITDIEDGL 60 Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83 + ++ A + PL LL P Sbjct: 61 IDADFSKVVKFARAFERPLDALLAP 85 >gi|269792208|ref|YP_003317112.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099843|gb|ACZ18830.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 117 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ LTQ+ + + ++ +I +E+ + ++D + LA LD + Sbjct: 1 MSLGMRVKVLRRAKGLTQQGLADTVNVSRVYIQSIESNRRRPSMDLLERLAEALDVTVAD 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|228954773|ref|ZP_04116794.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072008|ref|ZP_04205218.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229081756|ref|ZP_04214249.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|229111966|ref|ZP_04241510.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|229152697|ref|ZP_04280884.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|229180769|ref|ZP_04308107.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|229192702|ref|ZP_04319661.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228590792|gb|EEK48652.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228602747|gb|EEK60230.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|228630760|gb|EEK87402.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228671530|gb|EEL26830.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228701601|gb|EEL54094.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228711167|gb|EEL63132.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|228804893|gb|EEM51491.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 194 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77 Query: 80 LL 81 L+ Sbjct: 78 LM 79 >gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 8 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|30018872|ref|NP_830503.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|30260845|ref|NP_843222.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779842|ref|NP_977089.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525976|ref|YP_017325.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183686|ref|YP_026938.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49476873|ref|YP_034951.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144616|ref|YP_082212.1| transcriptional regulator [Bacillus cereus E33L] gi|65318122|ref|ZP_00391081.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118476376|ref|YP_893527.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163938619|ref|YP_001643503.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872916|ref|ZP_02217540.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635166|ref|ZP_02393482.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641831|ref|ZP_02400071.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689445|ref|ZP_02880636.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170709002|ref|ZP_02899433.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652794|ref|ZP_02935167.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190568571|ref|ZP_03021477.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196042062|ref|ZP_03109347.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047106|ref|ZP_03114324.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977794|ref|ZP_03238684.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217958280|ref|YP_002336826.1| DNA-binding protein [Bacillus cereus AH187] gi|218901889|ref|YP_002449723.1| DNA-binding protein [Bacillus cereus AH820] gi|222094450|ref|YP_002528509.1| transcriptional regulator [Bacillus cereus Q1] gi|225862672|ref|YP_002748050.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227816434|ref|YP_002816443.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228906448|ref|ZP_04070329.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229010123|ref|ZP_04167337.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|229056462|ref|ZP_04195875.1| Transcriptional regulator [Bacillus cereus AH603] gi|229089756|ref|ZP_04221016.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|229108302|ref|ZP_04237921.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|229120344|ref|ZP_04249594.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|229126121|ref|ZP_04255142.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|229131641|ref|ZP_04260523.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|229137494|ref|ZP_04266105.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|229143419|ref|ZP_04271848.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|229165635|ref|ZP_04293408.1| Transcriptional regulator [Bacillus cereus AH621] gi|229183027|ref|ZP_04310259.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|229195018|ref|ZP_04321795.1| Transcriptional regulator [Bacillus cereus m1293] gi|229602348|ref|YP_002865290.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684228|ref|ZP_05148088.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725890|ref|ZP_05187672.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734410|ref|ZP_05192123.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742096|ref|ZP_05199783.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755782|ref|ZP_05207815.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762352|ref|ZP_05214196.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296501446|ref|YP_003663146.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|301052344|ref|YP_003790555.1| transcriptional regulator [Bacillus anthracis CI] gi|29894414|gb|AAP07704.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|30254294|gb|AAP24708.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735759|gb|AAS39697.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47501124|gb|AAT29800.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177613|gb|AAT52989.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49328429|gb|AAT59075.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978085|gb|AAU19635.1| transcriptional regulator [Bacillus cereus E33L] gi|118415601|gb|ABK84020.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163860816|gb|ABY41875.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|164711329|gb|EDR16882.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510179|gb|EDR85585.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529425|gb|EDR92176.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126104|gb|EDS95000.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666607|gb|EDT17379.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081828|gb|EDT66897.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190560365|gb|EDV14344.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196022087|gb|EDX60776.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027087|gb|EDX65709.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743991|gb|EDZ55408.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065587|gb|ACJ79837.1| DNA-binding protein [Bacillus cereus AH187] gi|218536097|gb|ACK88495.1| DNA-binding protein [Bacillus cereus AH820] gi|221238507|gb|ACM11217.1| transcriptional regulator [Bacillus cereus Q1] gi|225788360|gb|ACO28577.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005797|gb|ACP15540.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228588453|gb|EEK46494.1| Transcriptional regulator [Bacillus cereus m1293] gi|228600484|gb|EEK58072.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|228617870|gb|EEK74922.1| Transcriptional regulator [Bacillus cereus AH621] gi|228640047|gb|EEK96448.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228646052|gb|EEL02275.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|228651867|gb|EEL07822.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228657328|gb|EEL13145.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228663154|gb|EEL18744.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228675139|gb|EEL30364.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|228693564|gb|EEL47267.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|228720936|gb|EEL72485.1| Transcriptional regulator [Bacillus cereus AH603] gi|228751256|gb|EEM01068.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|228853175|gb|EEM97951.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229266756|gb|ACQ48393.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|296322498|gb|ADH05426.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|300374513|gb|ADK03417.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] Length = 107 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|89097282|ref|ZP_01170172.1| hypothetical protein B14911_16925 [Bacillus sp. NRRL B-14911] gi|89088105|gb|EAR67216.1| hypothetical protein B14911_16925 [Bacillus sp. NRRL B-14911] Length = 98 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN-MIILAH 71 + +E++++ + + +R E KL+Q+++ TG+++ +IS++E ++ +A Sbjct: 17 PLDKEQILYIGSTIKRLRAEQKLSQEDLAGLTGYSREYISKVEQNHIDPSLGAGTASIAK 76 Query: 72 TLDTPLWKLLK 82 W+L+K Sbjct: 77 AFGLKTWELIK 87 >gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 185 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F +RKEA LTQ+++ + ++ +++ E G+S ++ + +A T + L + Sbjct: 1 MVFSEQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] Length = 377 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IR L+Q+++ G ++ IS +E+G+ + + LA L + L Sbjct: 9 NNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVEDLF 66 >gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] Length = 257 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R++ ++Q+++ +R G + +S+ E+G + + +I L+ + L+ Sbjct: 3 FSEKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDYLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|167747593|ref|ZP_02419720.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662] gi|239623031|ref|ZP_04666062.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652955|gb|EDR97084.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662] gi|239522610|gb|EEQ62476.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 120 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R +R+E T +++ R G + + +S++E G +++++ + + L+ Sbjct: 8 AQNIRTLREERGYTIEKLAERAGVSANHMSKVENGLRNLSMESYLNVLEALNV 60 >gi|86133152|ref|ZP_01051734.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85820015|gb|EAQ41162.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 494 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+IF + IR E L+ + +G ++S+++E+E GK D +++L+ +L+ Sbjct: 9 RLIFGLKLKQIRTERNLSLFGLAKLSGLSKSYLNEIEKGKKYPKTDKILLLSESLEVSYD 68 Query: 79 KLL 81 L+ Sbjct: 69 NLV 71 >gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] Length = 251 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R IR L+Q+ + + E G+S ID +I +A+ P+ LL Sbjct: 4 FGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTVIKIANYFSIPIDDLL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|150018283|ref|YP_001310537.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904748|gb|ABR35581.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 68 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E ++ NN + +R E KL+Q ++ G +++ IS +ETG+ ++L LD Sbjct: 2 EELVLHNNLKEVRTEQKLSQSQLAEMVGVSRNTISSIETGEFNPTAKLALVLCVALDKKF 61 Query: 78 WKLL 81 +L Sbjct: 62 EELF 65 >gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family [Pelobacter propionicus DSM 2379] Length = 368 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 42/81 (51%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR +++ S + RE + N+ + R+E +Q+E+ R G +++ +S +ETGK Sbjct: 6 PRERQNTVTHSIIMSREEIPLSNHIKKFREERGWSQQELAERAGLSRAGVSAIETGKLVP 65 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 + + LA P+ +L + Sbjct: 66 STVAALALAKVFACPVEELFQ 86 >gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ RK ++Q+E+ + + +S+ E G S + D +I +A L+ + +LL Sbjct: 6 KNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSVPDADVLIRMAELLNVSVSQLL 63 >gi|111025296|ref|YP_707716.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110824275|gb|ABG99558.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 254 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H + E I + R + KL+ +++ ++ G + S +S++E GK+ ++ + L Sbjct: 26 HTERGTVVEEEI-GVALKRARLDKKLSLRQVADQLGISTSLLSQVENGKTQPSVKTLFGL 84 Query: 70 AHTLDTPLWKLL 81 A L+ L K+L Sbjct: 85 ATVLEVSLDKIL 96 >gi|323519724|gb|ADX94105.1| hypothetical protein ABTW07_3688 [Acinetobacter baumannii TCDC-AB0715] Length = 182 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A] Length = 100 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+A +TQ E+ + G +S+IS +ETGK+ + +A L Sbjct: 40 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 91 >gi|206579655|ref|YP_002241227.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206568713|gb|ACI10489.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 200 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ E+ R G A+S +S+LE+G +++ + L LD P +L Sbjct: 25 VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 84 Query: 81 LKP 83 L+P Sbjct: 85 LEP 87 >gi|119854987|ref|YP_935592.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|145226009|ref|YP_001136663.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697705|gb|ABL94777.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|145218472|gb|ABP47875.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 92 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 1 MPRR-KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP R D+P + R R + + R +R E L+Q+ + +G A++ + ++E G+ Sbjct: 1 MPTRLPADDPDRAQQWQRRRALVGSRIRALRLERGLSQESLALESGVARNQLIQMEHGRR 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + I+ + +A L + +++ Sbjct: 61 GVLIERVYDIAEALGVSVNEIV 82 >gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 187 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +M N +RK + +TQ+++ + ++ IS+ E+ ++ ++++++ ++ L Sbjct: 14 KMEIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDSTSPDLESIVKISRIFHVSLD 73 Query: 79 KLLK 82 LLK Sbjct: 74 DLLK 77 >gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 107 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E LTQ E+ +S IS E+ K + D +I L++ + + LL Sbjct: 3 FGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKLSNFFNVSIDFLL 62 >gi|71907914|ref|YP_285501.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847535|gb|AAZ47031.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 80 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R L+Q+ + ++++S++E G ++ M L+ L+T + +LL Sbjct: 16 LARNMRQARIRRGLSQEALALEAEIDRTYVSQIERGIGNPSLRVMSQLSSVLETEVDELL 75 Query: 82 K 82 K Sbjct: 76 K 76 >gi|325569494|ref|ZP_08145590.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157283|gb|EGC69446.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 146 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + LTQ+E+ + + IS E +ST +ID +I L+ L Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLEA 60 Query: 80 LLKP 83 LLKP Sbjct: 61 LLKP 64 >gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 106 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + + +RK KL+Q+E+ G +S +E GKS ++D + +A L+ L Sbjct: 5 KELLGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALNVDLR 64 Query: 79 KLL 81 Sbjct: 65 DFF 67 >gi|330901746|gb|EGH33165.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 118 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 2 HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61 Query: 69 LAHTLDTPLWKLLK 82 +A L+ L++ Sbjct: 62 VAEALEVAFSDLIQ 75 >gi|239503877|ref|ZP_04663187.1| Helix-turn-helix family protein [Acinetobacter baumannii AB900] Length = 182 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|226310383|ref|YP_002770277.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093331|dbj|BAH41773.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P D + + IRKE L+ +++ +G ++ + +E G++ I + Sbjct: 3 PETDDPKQVV-LQVGGVLKKIRKEKHLSLEDLSELSGVSKLTLGNIERGETNPTIGVLWK 61 Query: 69 LAHTLDTPLWKLL 81 ++ L PL L Sbjct: 62 ISKCLSIPLLALF 74 >gi|152972701|ref|YP_001337847.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892309|ref|YP_002917043.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae NTUH-K2044] gi|330004503|ref|ZP_08304980.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150957550|gb|ABR79580.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544625|dbj|BAH60976.1| putative helix-turn-helix regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536576|gb|EGF62908.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 200 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ E+ R G A+S +S+LE+G +++ + L LD P +L Sbjct: 25 VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 84 Query: 81 LKP 83 L+P Sbjct: 85 LEP 87 >gi|229042280|ref|ZP_04190032.1| hypothetical protein bcere0027_3500 [Bacillus cereus AH676] gi|228727071|gb|EEL78276.1| hypothetical protein bcere0027_3500 [Bacillus cereus AH676] Length = 77 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R RK+A +Q+++ + +++I LE + +I + + + L+ + Sbjct: 5 KAFGEVLRKHRKKANFSQEQLALQCNLDRTYIGLLERAQRQPSISTIFTICNVLNIAPHE 64 Query: 80 LLK 82 L+K Sbjct: 65 LIK 67 >gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] Length = 184 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +I N + IR L+ E+ TG +++ + ++E G+S + + +A+ L Sbjct: 6 LIIGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSNPTVSTLWKIANGLKVS 62 >gi|78067809|ref|YP_370578.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968554|gb|ABB09934.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 183 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 259 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN R +R E ++Q E+ ++ IS E G ++ LA D P+ Sbjct: 3 NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKGLREPKLETWKKLADYFDVPI 56 >gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 215 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +LTQ+E+ NR ++ +IS++E ++ +I +I + L T L + Sbjct: 40 GEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLTSPSIATLIDILDILGTNLKEFF 98 >gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 182 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R A ++ E+ +R G + S +S +E G + +++ + +A L+ PL + Sbjct: 2 GLQIKALRMAAGISGNELAHRCGVSGSLLSRVERGLVSPSVETLNRIAVGLNVPLSRFF 60 >gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] Length = 149 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] Length = 108 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 +N R +R+ AKL+Q+E+ +++G +++ IS LE G + I +I +A L T + +L+ Sbjct: 5 GDNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEELI 64 >gi|300863840|ref|ZP_07108765.1| Transcriptional Regulator, XRE family protein [Oscillatoria sp. PCC 6506] gi|300338188|emb|CBN53911.1| Transcriptional Regulator, XRE family protein [Oscillatoria sp. PCC 6506] Length = 82 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 ILR + R R ++Q+E+ R +++IS +E G ++ + L Sbjct: 3 QSKKKILRA---LGHLVRQRRTALGISQEELGLRANLDRTYISGVERGVRNPSLTALTSL 59 Query: 70 AHTLDTPLWKLL 81 A LD + LL Sbjct: 60 AKGLDLTVSNLL 71 >gi|229016024|ref|ZP_04172980.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229022243|ref|ZP_04178788.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228739046|gb|EEL89497.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228745257|gb|EEL95303.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 66 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + ++ L L Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNKTLNDLF 61 >gi|26989372|ref|NP_744797.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984232|gb|AAN68261.1|AE016460_7 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313499269|gb|ADR60635.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 272 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R++A L+Q E+ TG +Q +S +ETG++ + + L LD PL + Sbjct: 18 GQHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASPGTLHALLSALDAPLER 74 >gi|262041673|ref|ZP_06014865.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288937864|ref|YP_003441923.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290513088|ref|ZP_06552451.1| DNA-binding protein [Klebsiella sp. 1_1_55] gi|259040935|gb|EEW42014.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288892573|gb|ADC60891.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289774470|gb|EFD82475.1| DNA-binding protein [Klebsiella sp. 1_1_55] Length = 182 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ E+ R G A+S +S+LE+G +++ + L LD P +L Sbjct: 7 VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|326203720|ref|ZP_08193583.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986160|gb|EGD46993.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R+E KL+ + +G ++S + ++E + + M +A+ L +L Sbjct: 7 IISENLKRVREEKKLSLDTVAKLSGVSKSMLGQIERCEVNPTVSTMWKIANGLKVSFSQL 66 Query: 81 L 81 + Sbjct: 67 V 67 >gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] Length = 107 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|255102292|ref|ZP_05331269.1| putative phage DNA-binding protein [Clostridium difficile QCD-63q42] Length = 254 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M N + IRK+ +LTQ ++ + +++ + E K NID + LA L Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISDISRNALINYENDKRIPNIDTLSKLAKALKIE 57 >gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I [Thermococcus barophilus MP] Length = 186 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R I R IRKE +TQ+E+ R G Q++I++LE+GK + + L Sbjct: 6 RPIDPREIRRIRKELGITQEELAKRAGVTQAYIAKLESGKVDPRLSTFNRILEAL 60 >gi|184159797|ref|YP_001848136.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211391|gb|ACC58789.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509710|gb|ADX05164.1| transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 182 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 149 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|16802791|ref|NP_464276.1| hypothetical protein lmo0749 [Listeria monocytogenes EGD-e] gi|224501947|ref|ZP_03670254.1| hypothetical protein LmonFR_05442 [Listeria monocytogenes FSL R2-561] gi|255030915|ref|ZP_05302866.1| hypothetical protein LmonL_20598 [Listeria monocytogenes LO28] gi|16410138|emb|CAC98827.1| lmo0749 [Listeria monocytogenes EGD-e] Length = 68 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E ++Q+E+ ++ IS +E G ++ I + L L L Sbjct: 5 NMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF 61 >gi|330943932|gb|EGH46140.1| RtrR protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 133 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +++Q + +S++ +E G+ I ++ + +A L Sbjct: 63 KALGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLACDPSG 122 Query: 80 LL 81 LL Sbjct: 123 LL 124 >gi|295704614|ref|YP_003597689.1| helix-turn-helix DNA-binding protein [Bacillus megaterium DSM 319] gi|294802273|gb|ADF39339.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium DSM 319] Length = 185 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR + + T E+ +RTG ++ + ++E G++ + M + L+ PL KL+ Sbjct: 10 VGNELRKIRTQREFTLDELADRTGVSKLTLGKIERGETNPTLGVMWKITTGLNIPLTKLV 69 >gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 106 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK +TQ ++ G + + I +E G + +A L + +L Sbjct: 4 FGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEELC 63 Query: 82 KP 83 P Sbjct: 64 GP 65 >gi|218134755|ref|ZP_03463559.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC 43243] gi|217990140|gb|EEC56151.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC 43243] Length = 187 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 31/59 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + IR+ ++ ++ +TG ++S ++++E G + ++ + + L +L+ P Sbjct: 11 NLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSLGVLGKITSGLRIEFQELIDP 69 >gi|15807634|ref|NP_294753.1| transcription regulator [Deinococcus radiodurans R1] Length = 190 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 13 DAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 A +R R IR++ +LT +++ +G +S++S LE +T ++ ++ + Sbjct: 7 RAAAPDRSAHIGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCD 66 Query: 72 TLDTPLWKLLKP 83 L +L P Sbjct: 67 ALGIRPGELFDP 78 >gi|56478434|ref|YP_160023.1| anaerobic benzoate catabolism transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56314477|emb|CAI09122.1| Putaive regulator of anaerobic benzoate metabolic operon consisting of shikimate kinase-like domain and a Helix-turn-helix domain [Aromatoleum aromaticum EbN1] Length = 285 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R +R +T+K + ++G ++ ++++LETG I+I + +A + PL Sbjct: 10 LMLGERIRELRARRGMTRKALAQQSGVSERYLAQLETGHGNISIILLRQIALGMGLPLVD 69 Query: 80 LLK 82 L++ Sbjct: 70 LVR 72 >gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 97 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +A+ ER I ++ R RKEA LTQ E+ +TG +Q+ IS LE G ++ + +A Sbjct: 22 EALQPERDITMSLIR-ARKEAGLTQAELSEKTGISQADISRLENGTRNPSLALLNRIAEA 80 Query: 73 LDTPLWKLLKP 83 +++ L P Sbjct: 81 VNSTLRIEFVP 91 >gi|262280440|ref|ZP_06058224.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262258218|gb|EEY76952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 182 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R+ A L+ E+ R G A+S +S+LE G+ +I+ + L L+ P + Sbjct: 6 EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 149 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|228960769|ref|ZP_04122407.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048209|ref|ZP_04193778.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|229129788|ref|ZP_04258755.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|229147062|ref|ZP_04275422.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228636450|gb|EEK92920.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228653704|gb|EEL09575.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|228723196|gb|EEL74572.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228798904|gb|EEM45880.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] Length = 194 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77 Query: 80 LL 81 L+ Sbjct: 78 LM 79 >gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] Length = 153 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 8 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 67 Query: 80 LLK 82 L+K Sbjct: 68 LIK 70 >gi|269956967|ref|YP_003326756.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305648|gb|ACZ31198.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 101 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R +R T ++ R G + ++SE+E G + + + +A LD L Sbjct: 11 RHVLGDYLRRLRHRRGETLDDVARRAGVSPQYLSEVERGMKEPSSEMIAAIAGALDVTLV 70 Query: 79 KL 80 L Sbjct: 71 DL 72 >gi|196044906|ref|ZP_03112140.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229032148|ref|ZP_04188124.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|229186737|ref|ZP_04313895.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|196024394|gb|EDX63067.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228596750|gb|EEK54412.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|228729154|gb|EEL80154.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 190 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1] gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 146 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al Hakam] gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 149 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|295693657|ref|YP_003602267.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295031763|emb|CBL51242.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 65 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R +TQ+++ + ++ IS +E G +++ I + LD L L P Sbjct: 5 KMKAARVGKDMTQEDLAQQVDVSRQTISAIEKGNYNPSVNLCIKICQVLDKTLDDLFWP 63 >gi|195977160|ref|YP_002122404.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973865|gb|ACG61391.1| hypothetical protein Sez_0004 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 121 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R E +L+Q + + ++ IS+ E G +T++++N++ LA L+ L +L+ Sbjct: 5 FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTLDELV 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|153803053|ref|ZP_01957639.1| conserved domain protein [Vibrio cholerae MZO-3] gi|124121411|gb|EAY40154.1| conserved domain protein [Vibrio cholerae MZO-3] Length = 69 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK LTQ ++ +S++ +E G+ + ++ + +A TL +L Sbjct: 8 LVGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNLTVEKLYEIAETLGCDAKEL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N RNIRK + TG +++ + ++E G+S + + +A L Sbjct: 5 QKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESNPTVTTLWKIASGLQVSFS 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 184 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 36/60 (60%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E L+ +E+ ++ + S++S++E GK++ +I+N+ +A +LD + L++ Sbjct: 6 GERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLIE 65 >gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 77 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +L+Q+++ G QS I +E+ I M LA L + + Sbjct: 1 MVGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESENRNPTIKTMKRLATALGVSIEEF 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 183 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 36/60 (60%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E L+ +E+ ++ + S++S++E GK++ +I+N+ +A +LD + L++ Sbjct: 5 GERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLIE 64 >gi|41057272|ref|NP_958300.1| hypothetical protein VWBp58 [Streptomyces phage VWB] gi|39656095|gb|AAR29746.1| hypothetical protein [Streptomyces phage VWB] Length = 76 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L R + R+ R L+Q E+ G I +E G S + ++ +AH +D Sbjct: 9 VLARRELIGARIRDARILTNLSQLELATLAGVDHKTIHRVEYGLSDPGLGLLLQIAHAVD 68 Query: 75 TPLWKLL 81 PL L+ Sbjct: 69 VPLAVLV 75 >gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605] gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605] Length = 230 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ LTQ + R G ++ IS+ E+G +T N N+I LA L+ LL Sbjct: 5 RIREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWLL 61 >gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 192 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R++R + +T E+ R+ ++ + ++E G++ +I+ + +A L + +L++ Sbjct: 12 AANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTNPSINTLNRIAEALGVSIGRLVE 71 >gi|260588959|ref|ZP_05854872.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|331083318|ref|ZP_08332431.1| hypothetical protein HMPREF0992_01355 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540738|gb|EEX21307.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|330404399|gb|EGG83944.1| hypothetical protein HMPREF0992_01355 [Lachnospiraceae bacterium 6_1_63FAA] Length = 77 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%) Query: 24 NNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLD 74 FR + RK LTQ ++ G +++ IS +E K++I++D++ +A L+ Sbjct: 7 RQFRELGLTISYYRKLKGLTQTQLAESVGLSRTHISNIEAPRVKTSISLDSLFDIAEALE 66 Query: 75 TPLWKLL 81 P+ L Sbjct: 67 VPVRDLF 73 >gi|311894998|dbj|BAJ27406.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 181 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 35/72 (48%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S+A R R N ++ R L+ +++ R G ++ +S+LE + I+ + +A Sbjct: 1 MSEATARLRTAIAGNLKHARLVRGLSLRDLAERAGVSKGLLSQLEHSAANPTIEVLGAVA 60 Query: 71 HTLDTPLWKLLK 82 L + L++ Sbjct: 61 AALGLEVADLIR 72 >gi|295101684|emb|CBK99229.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 255 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ F + +R+E +TQKE+ + +S+ E G S +I ++ LA L+ + Sbjct: 5 DKAAFGHFLAQLRREKGMTQKELAATLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTV 64 Query: 78 WKLLK 82 +LL+ Sbjct: 65 AELLQ 69 >gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] Length = 107 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|134096777|ref|YP_001102438.1| Cro/CI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005179|ref|ZP_06563152.1| Cro/CI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909400|emb|CAL99512.1| transcriptional regulator, Cro/CI family [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 55.0 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 1 MPRRKRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M D+P + + + +R E L Q + R Q+ ++ +E+G + Sbjct: 1 MVGGVSDQPETPNGSAGQALAGLGGRIGRLRTERGLDQATLARRAELEQTHLAGVESGTA 60 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 T ++ + LA LD L +L Sbjct: 61 TPSLPVLAQLAEALDVGLSELFT 83 >gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 203 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LT + + TG + S +S LE+GK +D ++ LA L +L+ Sbjct: 16 GPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESGKRRPTLDLLLPLARAHRVALDQLV 74 >gi|256822716|ref|YP_003146679.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796255|gb|ACV26911.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 242 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R++R + TQ E + G QS++S++E KS + + L + + Sbjct: 1 MTLGEKLRSLRSTSSWTQPEFARKLGIEQSYLSKMENDKSIPSTEMFDKLCTAYEVTPDE 60 Query: 80 LLK 82 +LK Sbjct: 61 MLK 63 >gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239] gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239] Length = 141 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F N + +RKE ++Q+++ ++ IS+ E+GK+ +I+N+I+L L Sbjct: 3 FNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSL 58 >gi|149914665|ref|ZP_01903195.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] gi|149811458|gb|EDM71293.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b] Length = 210 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 7/81 (8%) Query: 1 MPRRKRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 MP+ K + R R +R +T ++ TG + +S++E Sbjct: 1 MPQTK--LSQDPHKLRETREKNLETAIGREVREVRHARGMTVADLAEATGLSVGMLSKIE 58 Query: 56 TGKSTINIDNMIILAHTLDTP 76 G ++ ++ + L+ L P Sbjct: 59 NGVTSPSLTTLQALSSALSVP 79 >gi|30020510|ref|NP_832141.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127815|ref|ZP_04256801.1| hypothetical protein bcere0015_22620 [Bacillus cereus BDRD-Cer4] gi|29896061|gb|AAP09342.1| Transcriptional regulator [Bacillus cereus ATCC 14579] gi|228655580|gb|EEL11432.1| hypothetical protein bcere0015_22620 [Bacillus cereus BDRD-Cer4] Length = 185 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|15894856|ref|NP_348205.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024531|gb|AAK79545.1|AE007667_10 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508994|gb|ADZ20630.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 110 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + RN RK TQ+ + + ++S++E GK+ IN++ ++ + L+ + Sbjct: 7 IIGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLNITPSYI 66 Query: 81 LK 82 L Sbjct: 67 LT 68 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + +RK++ ++Q+E+ + G ++ +S+ E +ST +++ ++ ++ D Sbjct: 1 MIFADKLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|228944445|ref|ZP_04106818.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815347|gb|EEM61595.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 66 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKVKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] Length = 107 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] Length = 107 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|239626413|ref|ZP_04669444.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516559|gb|EEQ56425.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 232 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N RN+RK+ K++Q+++ + +S ETG++ +I+ + +A DT Sbjct: 5 GKNIRNLRKQKKMSQEQLAGLLHVTRQAVSNWETGRTQPDIETLEAIAGAFDT 57 >gi|149183902|ref|ZP_01862291.1| transcriptional regulator [Bacillus sp. SG-1] gi|148848385|gb|EDL62646.1| transcriptional regulator [Bacillus sp. SG-1] Length = 118 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + ++IR+ +T E+ R ++S+IS +E + +I + +A L+ PL Sbjct: 1 MVGEKIKSIRENKGITINELAQRADISKSYISTIERDIQKNPSIKVLEKIAAALEVPLDM 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 204 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E K+T ++ G ++S +SE+E K+ I L + L L L Sbjct: 27 VGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 86 Query: 82 KP 83 P Sbjct: 87 AP 88 >gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 268 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E L+Q ++ + G ++ IS+ ETG S ++D +I L+ D L L+ Sbjct: 3 LGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSVPDLDKLIALSELFDVSLDNLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|579178|emb|CAA26567.1| unnamed protein product [Bacillus phage phi105] Length = 147 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + IRKE KLTQ ++ + ++S+++++E + ++ + +A L + Sbjct: 4 MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 63 Query: 80 LL 81 ++ Sbjct: 64 IV 65 >gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519] gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii] Length = 183 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +RKE T K++ ++T + S++S++E G S++ I ++ L P+ Sbjct: 8 ADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSSSLAITSLKKLVDAFSVPM 62 >gi|265750635|ref|ZP_06086698.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237531|gb|EEZ22981.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 77 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+A +TQ ++ + G +S+IS +ETGK+ + +A L Sbjct: 20 IEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68 >gi|239982942|ref|ZP_04705466.1| hypothetical protein SalbJ_26149 [Streptomyces albus J1074] Length = 199 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R N R R + +E+ TG ++ +S++E ++ ++ + LA L T Sbjct: 22 AREALAQNVRRHRLARGWSLRELGAATGISKGLLSQIERAEANPTLEILTRLADVLATTC 81 Query: 78 WKLLK 82 LL+ Sbjct: 82 TDLLR 86 >gi|218676103|ref|YP_002394922.1| hypothetical protein VS_II0323 [Vibrio splendidus LGP32] gi|218324371|emb|CAV25742.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 521 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63 LS +++R+ RN+RK LT +++ R + S++S +E GK +I Sbjct: 19 LSKSLVRQSHFLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSI 78 Query: 64 DNMIILAHTLDT-PLWKL 80 D + ++A P W L Sbjct: 79 DMLEVIAQVFQKNPTWFL 96 >gi|218899660|ref|YP_002448071.1| DNA-binding protein [Bacillus cereus G9842] gi|218541106|gb|ACK93500.1| DNA-binding protein [Bacillus cereus G9842] Length = 190 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|153955543|ref|YP_001396308.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855938|ref|YP_002473060.1| hypothetical protein CKR_2595 [Clostridium kluyveri NBRC 12016] gi|146348401|gb|EDK34937.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569662|dbj|BAH07646.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 109 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + +LTQ+++ + S++ ++E G+ ++ +D +I + L + LL Sbjct: 6 LGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVTVDYLL 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|126738636|ref|ZP_01754341.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] gi|126720435|gb|EBA17141.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] Length = 188 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL+ Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 >gi|161526154|ref|YP_001581166.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349130|ref|YP_001944758.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343583|gb|ABX16669.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189333152|dbj|BAG42222.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 183 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 370 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R L+Q ++ + ++ I+++E G ++ + LA LD P+ L Sbjct: 16 GERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELARLAQALDVPIGHFLH 75 Query: 83 P 83 P Sbjct: 76 P 76 >gi|294499262|ref|YP_003562962.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium QM B1551] gi|294349199|gb|ADE69528.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium QM B1551] Length = 185 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR + + T E+ +RTG ++ + ++E G++ + M + L+ PL KL+ Sbjct: 10 VGNELRKIRTQREFTLDELADRTGVSKLTLGKIERGETNPTLGVMWKITTGLNIPLTKLV 69 >gi|229495100|ref|ZP_04388846.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229318031|gb|EEN83906.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 196 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ A LT + + +TG +S++S++E G ST +I + +A LD + +L Sbjct: 5 LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLF 60 >gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 201 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ +TQ+E+ +++ +S+ E+G+ +ID++ ++ L +LL Sbjct: 3 FHEKLQELRKQRGMTQEELATALYVSRTAVSKWESGRGYPSIDSLKAISGFFGVSLDQLL 62 >gi|228906150|ref|ZP_04070039.1| hypothetical protein bthur0013_3350 [Bacillus thuringiensis IBL 200] gi|228853559|gb|EEM98327.1| hypothetical protein bthur0013_3350 [Bacillus thuringiensis IBL 200] Length = 75 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R RK+A +Q+++ + +++I LE + +I + + L+ + Sbjct: 5 KAFGEVLRKHRKKANFSQEQLALQCNLDRTYIGLLERAQRQPSISTIFAICKVLNIAPHE 64 Query: 80 LLK 82 L+K Sbjct: 65 LIK 67 >gi|222150597|ref|YP_002559750.1| hypothetical protein MCCL_0347 [Macrococcus caseolyticus JCSC5402] gi|222119719|dbj|BAH17054.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 167 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R IRKE +LT K++ T + ++S+LET KS + + ++A L+ + Sbjct: 1 MSIGENIRKIRKERELTLKQVAELTDLSIPFLSQLETNKSDATMATIRLIADALEVHPSQ 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|115372718|ref|ZP_01460024.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823476|ref|YP_003955834.1| DigR protein [Stigmatella aurantiaca DW4/3-1] gi|115370199|gb|EAU69128.1| sigma-54 dependent DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396548|gb|ADO74007.1| DigR protein [Stigmatella aurantiaca DW4/3-1] Length = 197 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +K+ +A L R I R+ RK +LT K++ RTG + S +S++E +S+ +I Sbjct: 119 QKKGLSQDPEADL-HRAI-GRVIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASI 176 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ +A L + +L Sbjct: 177 SSLYKIASALQLRMGELF 194 >gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125] gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125] Length = 189 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR + +T ++ +TG ++ + ++E G+S + + +A L Sbjct: 11 GQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESNPTVSTLWKIATGLHVS 64 >gi|224535292|ref|ZP_03675831.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus DSM 14838] gi|224523100|gb|EEF92205.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus DSM 14838] Length = 103 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R+ RK+ K+TQ+E+ + G A+S+I+ +E G++ I I + +A L Sbjct: 43 YGEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGIE 97 >gi|126652627|ref|ZP_01724791.1| post-exponential-phase response transcriptional regulator [Bacillus sp. B14905] gi|126590618|gb|EAZ84735.1| post-exponential-phase response transcriptional regulator [Bacillus sp. B14905] Length = 248 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77 + F + R K++ +E+ R G + ++S+LE + +++ ++ +++ L L Sbjct: 3 KETFGEAIKEARIARKISLRELARRIGISHPYLSQLENNHNNNPSLEIIVKISNELGISL 62 Query: 78 WKLL 81 L+ Sbjct: 63 QHLI 66 >gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D SD++ R + +R E +T + TG ++S +S LE+G +++ + Sbjct: 26 DPAPASDSVARTLNEVGPRLKRLRAERGITLAALAETTGISKSTLSRLESGGRRPSLELL 85 Query: 67 IILAHTLDTPLWKLL 81 + ++ PL +L+ Sbjct: 86 LPISQAYQVPLDELV 100 >gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 179 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +LTQ E+ R + +IS++E ++ +I ++ + L + K Sbjct: 4 GEKIRRLRILNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDILEALGIDVNKFF 62 >gi|150403019|ref|YP_001330313.1| helix-turn-helix domain-containing protein [Methanococcus maripaludis C7] gi|150034049|gb|ABR66162.1| helix-turn-helix domain protein [Methanococcus maripaludis C7] Length = 182 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+ + N TG ++S + ++E G+ I ++ +++ L L Sbjct: 7 VISKNLKIIRKRKDLSLDALSNITGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTSL 66 Query: 81 LK 82 LK Sbjct: 67 LK 68 >gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 181 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R + +IS+LE ++ +I + + + + Sbjct: 4 GERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQEFF 62 >gi|88812246|ref|ZP_01127497.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] gi|88790497|gb|EAR21613.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] Length = 179 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + +TG +S++S++E G +T +I + +A L+ + +L Sbjct: 4 RLKLLRKKLGFTLEALAQQTGLTKSYLSKVERGLNTPSIAVALKVAEALNVQVEELF 60 >gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 199 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R RD+P L + R +RK+ +T + TG + S +S LE+G Sbjct: 1 MKERDRDDPELESVLSG----VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRR 56 Query: 61 INIDNMIILAHTLDTPLWKLL 81 +++ M+ +A + PL L+ Sbjct: 57 PSLELMLPIARAHEVPLDDLV 77 >gi|229175212|ref|ZP_04302728.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228608348|gb|EEK65654.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 190 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|169334175|ref|ZP_02861368.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] gi|169258892|gb|EDS72858.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] Length = 219 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F IRKE LTQ+E+ + +++ +S+ E+G+ +ID++ ++ + +LL Sbjct: 22 FNEKLVLIRKEKGLTQEELASLLFVSRTAVSKWESGRGYPSIDSLKEISRVFGVTIDELL 81 >gi|163796160|ref|ZP_02190122.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] gi|159178619|gb|EDP63159.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] Length = 195 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +R +L+ +++ R G ++ + ++E +S NI + LA L + L Sbjct: 12 VIARNVALLRHGQRLSYEQLARRAGVSKGVVVQIEQARSNPNIATLCRLASALGVAVVDL 71 Query: 81 L 81 L Sbjct: 72 L 72 >gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] Length = 189 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|23098799|ref|NP_692265.1| hypothetical protein OB1344 [Oceanobacillus iheyensis HTE831] gi|22777026|dbj|BAC13300.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 189 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 34/67 (50%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + + + +R K TQ++I + G ++S +S++E G++ I + ++ L Sbjct: 2 VPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALK 61 Query: 75 TPLWKLL 81 PL LL Sbjct: 62 VPLAWLL 68 >gi|88855827|ref|ZP_01130490.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] gi|88815151|gb|EAR25010.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] Length = 201 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 31/73 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + +N R+ KLT ++ G ++ + +E G + ++ ++ L+ Sbjct: 1 MDEPTELLARTIGARVKNERQARKLTLDQLAENAGVSRRMVINVEQGAANPSVGTLLRLS 60 Query: 71 HTLDTPLWKLLKP 83 L L L++P Sbjct: 61 EALGVSLPALVEP 73 >gi|323486027|ref|ZP_08091358.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] gi|323400594|gb|EGA92961.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] Length = 143 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ N +RK+ +TQ+E+ G +S IS +E GK +I+N+ LA + + Sbjct: 72 VYALNLAYLRKKYGMTQQELVEIIGLKNKSSISLIENGKYEPSIENLEKLADFFGVTMDQ 131 Query: 80 LLK 82 ++K Sbjct: 132 IVK 134 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + +R++ TQ E+ G Q IS E G I ++ LA L Sbjct: 1 MYLAENLKFLREQNGKTQGELAVLFGIEQKTISSWECGSRKPPIGTIVSLAKLYRVSLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612] gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612] Length = 99 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +R+E TQ+++ ++ G + +S ET ++D + +A TL+T LL Sbjct: 4 FGSKLRQLRQEKGYTQQQLADKLGITKGSVSAYETSAKYPSVDVLRKIAVTLNTSTDFLL 63 >gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 111 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKEA +T E+ ++ G A+S++S LE ++ +I + +A+ L + Sbjct: 1 MIGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQTNPSIQFLEKVANVLGLSIDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|228910327|ref|ZP_04074143.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228849279|gb|EEM94117.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 194 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77 Query: 80 LL 81 L+ Sbjct: 78 LM 79 >gi|226307935|ref|YP_002767895.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187052|dbj|BAH35156.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 196 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ A LT + + +TG +S++S++E G ST +I + +A LD + +L Sbjct: 5 LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLF 60 >gi|210634337|ref|ZP_03298073.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM 13279] gi|210158864|gb|EEA89835.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM 13279] Length = 68 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E + N+ R RKE L+Q ++ TG +++ IS +ETG+ ++L LD Sbjct: 1 MKESLTLKNSLRAARKERGLSQAQLAEMTGVSRNTISSIETGQFNPTAKLALVLCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|218234511|ref|YP_002369300.1| DNA-binding protein [Bacillus cereus B4264] gi|228923247|ref|ZP_04086537.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|218162468|gb|ACK62460.1| DNA-binding protein [Bacillus cereus B4264] gi|228836453|gb|EEM81804.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 190 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|206969718|ref|ZP_03230672.1| DNA-binding protein [Bacillus cereus AH1134] gi|206735406|gb|EDZ52574.1| DNA-binding protein [Bacillus cereus AH1134] Length = 190 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|148272654|ref|YP_001222215.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830584|emb|CAN01520.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 475 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ R+ RK A LT + + R G S +S +E G+ + + +A L + Sbjct: 2 DQLVIGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALGVDV 61 Query: 78 WKLL 81 LL Sbjct: 62 THLL 65 >gi|56964628|ref|YP_176359.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] gi|56910871|dbj|BAD65398.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16] Length = 209 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +Q ++ + + IS+ E GK + +++ + +A LDT + Sbjct: 5 KTLLAENLMKARIRKGYSQTDLAEILNVSSATISQYEKGKRSPDVEKLHTIAKVLDTTIP 64 Query: 79 KLL 81 +L+ Sbjct: 65 ELI 67 >gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 211 Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +L+ + + +G A + +S +E G+++ ++ + LA L P+ Sbjct: 19 VGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPVSTFF 78 Query: 82 KP 83 P Sbjct: 79 TP 80 >gi|309388947|gb|ADO76827.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM 2228] Length = 116 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK LTQ+ + + ++I ++E G+ ++ ++I +A L+ + KLL Sbjct: 14 RKLNDLTQETLGEKADLHYTYIGQVERGEKEPSLKSLINIADALEIGIDKLL 65 >gi|300723214|ref|YP_003712514.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629731|emb|CBJ90337.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ LT + +TG +S++S++E G S +I + L+ L+ + +L Sbjct: 5 LKILRKKLGLTLDSLAEKTGMTKSYLSKVERGLSKPSIATALKLSIALNVSVEELF 60 >gi|296504980|ref|YP_003666680.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|296326032|gb|ADH08960.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 190 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGEANPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium] gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium] Length = 96 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E ++Q+ + + G +S + ++E G+ + + +A LD L+ Sbjct: 25 FGAAVRALRIERGISQESLAHLAGIERSHMGKVERGEHMPTLAVIFKIARALDCSTAVLM 84 >gi|255305199|ref|ZP_05349371.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] Length = 67 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +N + R+ KLTQK++ ++ +IS++E G +A L + +L Sbjct: 1 MFKSNLKYYRELNKLTQKQLALEVNVSKEYISQIERGIKNPGFFTAQKIAKILGITIDEL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|254439667|ref|ZP_05053161.1| Cupin domain protein [Octadecabacter antarcticus 307] gi|198255113|gb|EDY79427.1| Cupin domain protein [Octadecabacter antarcticus 307] Length = 189 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R +RK LT + G + W+S++E KS +I ++ +A LD Sbjct: 6 PPESCTLGADIRALRKARGLTLSGLGETLGRSVGWLSQVERDKSEPSISDLRYIASALDV 65 Query: 76 PLWKLLK 82 + L + Sbjct: 66 SVSSLFR 72 >gi|295105300|emb|CBL02844.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +TQ ++ ++ + +I+ +E GK + D + + H L L ++ Sbjct: 9 LGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSII 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] Length = 146 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|221066672|ref|ZP_03542777.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220711695|gb|EED67063.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 97 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 31/75 (41%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 + E + F R RK +Q+ + G +S+I +E G+ + + N++ Sbjct: 4 AKESLKNKVPELVRFGEAVRARRKACGYSQEAFGDACGIDRSYIGGIERGEHNLALINIL 63 Query: 68 ILAHTLDTPLWKLLK 82 + TL+ + + Sbjct: 64 KIIATLNLQPSEFFE 78 >gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 209 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ +TQKE + G Q ++S +E GK ++ +I L H+ Sbjct: 11 GLRIKEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIALCHSYGI 63 >gi|329941544|ref|ZP_08290809.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299261|gb|EGG43161.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] Length = 190 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R E T + R G ++ + ++E ++ ++ ++ + L L Sbjct: 9 QSLARNVRRWRAERGFTLDALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSLPT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 241 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D+++ LA LDT L +L Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|255320501|ref|ZP_05361682.1| transcriptional regulator, XRE family [Acinetobacter radioresistens SK82] gi|262378393|ref|ZP_06071550.1| transcriptional regulator [Acinetobacter radioresistens SH164] gi|255302473|gb|EET81709.1| transcriptional regulator, XRE family [Acinetobacter radioresistens SK82] gi|262299678|gb|EEY87590.1| transcriptional regulator [Acinetobacter radioresistens SH164] Length = 182 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + R++A L+ E+ R G A+S +S+LE + +++ + L LD P K Sbjct: 6 EIVAKGLQRERQKAGLSLTEVARRAGIAKSTLSQLEAAQGNPSLETLWALCVALDIPFAK 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|228938260|ref|ZP_04100874.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971138|ref|ZP_04131770.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977747|ref|ZP_04138132.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228781955|gb|EEM30148.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228788564|gb|EEM36511.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821396|gb|EEM67407.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938767|gb|AEA14663.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] Length = 150 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK +LTQ+++ + ++ IS+ E+G+ ++ ++ L+ D + LL Sbjct: 3 FAEKLITLRKSRELTQEQLAEQLNVSRQSISKWESGQVIPEVEKIVELSKVFDVTVDYLL 62 Query: 82 KP 83 KP Sbjct: 63 KP 64 >gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|160945560|ref|ZP_02092786.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] gi|158443291|gb|EDP20296.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +TQ ++ ++ + +I+ +E GK + D + + H L L ++ Sbjct: 11 LGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSII 70 Query: 82 KP 83 P Sbjct: 71 NP 72 >gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579] gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579] gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] Length = 149 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains [Thermococcus kodakarensis KOD1] Length = 192 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R I R IRKE +TQ+E+ + G Q++I++LE GK + + + L Sbjct: 6 RPIDPREIRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVDPRLSTLNRILQAL 60 >gi|271964933|ref|YP_003339129.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508108|gb|ACZ86386.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 489 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++RK+ LT ++ R A S +S LE GK + + LA L+ P+ +LL Sbjct: 21 FGQRLRHLRKQRGLTLSDLGERVSRAPSQLSLLENGKREPKLSLLKSLATALNVPVEELL 80 Query: 82 K 82 + Sbjct: 81 R 81 >gi|239939715|ref|ZP_04691652.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986200|ref|ZP_04706864.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291443141|ref|ZP_06582531.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291346088|gb|EFE72992.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 190 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R+G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVAITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|194709160|pdb|3CLC|A Chain A, Crystal Structure Of The Restriction-Modification Controller Protein C.Esp1396i Tetramer In Complex With Its Natural 35 Base-Pair Operator gi|194709161|pdb|3CLC|B Chain B, Crystal Structure Of The Restriction-Modification Controller Protein C.Esp1396i Tetramer In Complex With Its Natural 35 Base-Pair Operator gi|194709162|pdb|3CLC|C Chain C, Crystal Structure Of The Restriction-Modification Controller Protein C.Esp1396i Tetramer In Complex With Its Natural 35 Base-Pair Operator gi|194709163|pdb|3CLC|D Chain D, Crystal Structure Of The Restriction-Modification Controller Protein C.Esp1396i Tetramer In Complex With Its Natural 35 Base-Pair Operator Length = 82 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR E +TQ+++ ++ +++IS +E + I ++ ++ L+ Sbjct: 16 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 66 >gi|218895211|ref|YP_002443622.1| DNA-binding protein [Bacillus cereus G9842] gi|228898828|ref|ZP_04063111.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|228905871|ref|ZP_04069769.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228937377|ref|ZP_04100024.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228963175|ref|ZP_04124345.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|218540820|gb|ACK93214.1| DNA-binding protein [Bacillus cereus G9842] gi|228796560|gb|EEM43998.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228822335|gb|EEM68316.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853811|gb|EEM98570.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228860853|gb|EEN05230.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|326937867|gb|AEA13763.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L+ + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 DELM 65 >gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 188 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ + +Q ++ R G A++ IS++E G + ++ LA D L L Sbjct: 11 LIARRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLATAFDLTLAGL 70 Query: 81 L 81 L Sbjct: 71 L 71 >gi|221065949|ref|ZP_03542054.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220710972|gb|EED66340.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 298 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 H + R F + R+ R+ +L+Q+ + + +S +ETG++ + + + Sbjct: 20 SSSHAAHPPPGARAPFGEHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMV 79 Query: 67 IILAHTLDTPLWK 79 + LA L PL + Sbjct: 80 LRLAERLSVPLRE 92 >gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] Length = 377 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IR L+Q+++ G ++ IS +E+G+ + + LA L + L Sbjct: 9 NNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVEDLF 66 >gi|206972608|ref|ZP_03233551.1| DNA-binding protein [Bacillus cereus AH1134] gi|206732510|gb|EDZ49689.1| DNA-binding protein [Bacillus cereus AH1134] Length = 67 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L+ + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 EELM 65 >gi|160901221|ref|YP_001566803.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366805|gb|ABX38418.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 90 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+ +Q+ + + +S++ E+E G+ ++ + LA +L L+ Sbjct: 9 FGIAVRQAREAHGWSQERLAEHSDLNRSYVGEIERGRVIASLLTVEKLAVSLGVQPSALV 68 >gi|30022584|ref|NP_834215.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|29898142|gb|AAP11416.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 190 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ ++TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|84514580|ref|ZP_01001944.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84511631|gb|EAQ08084.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 189 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT + R G + W+S++E S+ ++D++ LA LD LL Sbjct: 14 GADLRALRKARGLTLTALAERVGRSVGWLSQVERDLSSASVDDIAALARVLDVATSSLL 72 >gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] Length = 180 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ LTQ+E+ NR + +IS+LE +++ +I + + L L + Sbjct: 4 GEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQTSPSIATLKDILDVLGVSLADFFR 63 >gi|312883075|ref|ZP_07742806.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369235|gb|EFP96756.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC BAA-2122] Length = 506 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPENAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDTPL 77 + ++A Sbjct: 64 MLEVIADVFQKEP 76 >gi|254452205|ref|ZP_05065642.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198266611|gb|EDY90881.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 215 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R++ ++T ++ TG + +S++E G ++ ++ + LAH L PL + Sbjct: 30 GREVRAFRRKQEITVADLSATTGLSIGMLSKIENGITSPSLTTLQTLAHALAVPLTSFFR 89 >gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 183 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|309804464|ref|ZP_07698531.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309809826|ref|ZP_07703678.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312873153|ref|ZP_07733212.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|312873404|ref|ZP_07733455.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|325911527|ref|ZP_08173936.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166217|gb|EFO68433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308169868|gb|EFO71909.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311091088|gb|EFQ49481.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311091386|gb|EFQ49771.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325476657|gb|EGC79814.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 210 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|259501148|ref|ZP_05744050.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|302190406|ref|ZP_07266660.1| DNA-binding protein [Lactobacillus iners AB-1] gi|309804359|ref|ZP_07698435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|312871026|ref|ZP_07731129.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325913257|ref|ZP_08175625.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|259167842|gb|EEW52337.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|308163571|gb|EFO65842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|311093521|gb|EFQ51862.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477360|gb|EGC80504.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 210 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|239623815|ref|ZP_04666846.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521846|gb|EEQ61712.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 186 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ KLT TG ++S ++++E G I + +A+ L+ Sbjct: 9 VGRNIRRLREAKKLTLDGAAAATGVSRSMLAQIEKGDVNPTISVLWKIANGYKVSFTSLV 68 Query: 82 K 82 + Sbjct: 69 E 69 >gi|218897381|ref|YP_002445792.1| DNA-binding protein [Bacillus cereus G9842] gi|228901027|ref|ZP_04065238.1| hypothetical protein bthur0014_22270 [Bacillus thuringiensis IBL 4222] gi|228965407|ref|ZP_04126494.1| hypothetical protein bthur0004_22380 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544800|gb|ACK97194.1| DNA-binding protein [Bacillus cereus G9842] gi|228794238|gb|EEM41755.1| hypothetical protein bthur0004_22380 [Bacillus thuringiensis serovar sotto str. T04001] gi|228858624|gb|EEN03073.1| hypothetical protein bthur0014_22270 [Bacillus thuringiensis IBL 4222] Length = 185 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL 4222] Length = 65 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L T + + Sbjct: 2 NKIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59 >gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241] gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241] gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 107 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG] Length = 243 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D+++ LA LDT L +L Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|227505364|ref|ZP_03935413.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] gi|227198066|gb|EEI78114.1| conserved hypothetical protein [Corynebacterium striatum ATCC 6940] Length = 116 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG------KSTINIDNMIILAHTLDT 75 F + R R+ ++QK + +G ++S IS LE ++ + + LA+ L+ Sbjct: 15 FASRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYALEV 74 Query: 76 PLWKLL 81 P LL Sbjct: 75 PPSLLL 80 >gi|225867621|ref|YP_002743569.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225700897|emb|CAW97557.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 120 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R E +L+Q + + ++ IS+ E G +T +++N++ LA L+ L +L+ Sbjct: 4 FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELV 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|295837564|ref|ZP_06824497.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197698354|gb|EDY45287.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 280 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R +R EA L K++ R G+ +S IS LETGK T ID++ A D Sbjct: 7 QTGREALGARLRELRTEAGLQGKDLAARLGWQRSKISRLETGKQTPTIDDLAAWAQATD 65 >gi|159038038|ref|YP_001537291.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916873|gb|ABV98300.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 175 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ +R A ++ ++ G +++ + +E G + + LA L PL +LL+ Sbjct: 2 GSHVHRLRTAAGISLADLAAAGGISRTTLHGIEQGHGNPTLSTLWALATALRVPLGELLE 61 >gi|124010434|ref|ZP_01695075.1| conserved hypothetical protein [Microscilla marina ATCC 23134] gi|123983471|gb|EAY23951.1| conserved hypothetical protein [Microscilla marina ATCC 23134] Length = 504 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+IF + +R E KL+ E+ TG + S+++E+E GK + + LA TL+ Sbjct: 9 RLIFGVKVKQLRTEKKLSLAEVSKATGISISYLNEIEKGKKYPKPNKIATLAQTLEV 65 >gi|146308486|ref|YP_001188951.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145576687|gb|ABP86219.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 197 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 LR + R+ +L ++ G +Q +S++E + + ++D + L L Sbjct: 7 PRLRLEQYLGMQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDTLSRLCDVL 66 Query: 74 DTPLWKLL 81 P+ KL Sbjct: 67 GMPMSKLF 74 >gi|309779373|ref|ZP_07674135.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] gi|308921931|gb|EFP67566.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] Length = 198 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ KL+ E+ R G ++S +S++E + + + LA L L L Sbjct: 17 VGAKLQTLRQARKLSLDELSRRAGVSKSMLSQVERNLANPTVAVLWRLATALGVGLADFL 76 Query: 82 KP 83 P Sbjct: 77 SP 78 >gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 195 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R I R++R++ T ++ TG ++ + ++E G+S + + +A Sbjct: 3 EPVDFSRRI-GQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIATG 61 Query: 73 LDTPLWKLLK 82 L P L+ Sbjct: 62 LGVPFSTFLR 71 >gi|302517812|ref|ZP_07270154.1| transcriptional regulatory protein [Streptomyces sp. SPB78] gi|318061036|ref|ZP_07979757.1| transcriptional regulatory protein [Streptomyces sp. SA3_actG] gi|302426707|gb|EFK98522.1| transcriptional regulatory protein [Streptomyces sp. SPB78] Length = 193 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R E T + R G ++ I ++E ++ ++ ++ +A L + LL Sbjct: 11 LARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPTLL 70 >gi|228993234|ref|ZP_04153155.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] gi|228766560|gb|EEM15202.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] Length = 190 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|228999282|ref|ZP_04158862.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] gi|229006837|ref|ZP_04164470.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228754459|gb|EEM03871.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228760479|gb|EEM09445.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] Length = 190 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L PL + Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] Length = 189 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] Length = 323 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 39/69 (56%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 E +F +++R++AK++Q+++ + ++ +++ ETG +I+N+ +A Sbjct: 15 KTEEEHKMFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLF 74 Query: 74 DTPLWKLLK 82 D + +LL+ Sbjct: 75 DISIDELLE 83 >gi|119512426|ref|ZP_01631508.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414] gi|119462892|gb|EAW43847.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414] Length = 68 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I + R E +Q+ + TG +++IS+LE G + ++ + + H+L Sbjct: 12 QILGLELQRHRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITHSLGI 67 >gi|186470704|ref|YP_001862022.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197013|gb|ACC74976.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 213 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R LT ++ ++G ++S +S++E G+ + ++D+++ LA L + L Sbjct: 26 LGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIENGQVSTSLDSIVSLARALGISISALF 85 Query: 82 K 82 K Sbjct: 86 K 86 >gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] Length = 189 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|182412902|ref|YP_001817968.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177840116|gb|ACB74368.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 83 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + +P I + + RK+A L+Q E+ R G ++++ +E G+ +I + Sbjct: 4 KKDPRTPAQIKLAKQL-GAAIAEARKKAGLSQDELAYRCGLHRAYMGFVEQGRYSITVAT 62 Query: 66 MIILAHTLDTPLWKLL 81 ++ + LD ++L Sbjct: 63 LVQVCSELDAKPSEIL 78 >gi|156935962|ref|YP_001439878.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894] gi|156534216|gb|ABU79042.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC BAA-894] Length = 182 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R A L+ E+ R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 VIAQSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 66 Query: 81 LKP 83 ++P Sbjct: 67 MEP 69 >gi|86738850|ref|YP_479250.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86565712|gb|ABD09521.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 111 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 I F R+ A LTQ+++ R+G ++ I+ +E G+ + ++ LAH + Sbjct: 2 TIEPAYQEFGERLAQTRRHASLTQRDVAERSGISRPTIANIEKGRQRLLYHQLLDLAHAI 61 Query: 74 DTPLWKLL 81 LL Sbjct: 62 GVDPRDLL 69 >gi|88706762|ref|ZP_01104463.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88698943|gb|EAQ96061.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 186 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R+ +T +++ +G ++S +S++E GK+ + +A T + +L Sbjct: 8 LLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERGKANPTLAVTQRIAQTFGISIGEL 67 Query: 81 L 81 + Sbjct: 68 V 68 >gi|302672043|ref|YP_003832003.1| AbrB family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396516|gb|ADL35421.1| transcriptional regulator AbrB family [Butyrivibrio proteoclasticus B316] Length = 139 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +N +RK ++TQ+++ + G + +++ E+G+S ++D LA L L Sbjct: 1 MFKDNLVQMRKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADIFGVSLDDL 60 >gi|78186553|ref|YP_374596.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166455|gb|ABB23553.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 213 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 L+Q+ + GF +++I +E G ++ + + A L + +LL Sbjct: 22 GLSQEAFAEKAGFHRTYIGTVERGAQSVTLQSYNKFARALGLNICELL 69 >gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579] gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171] gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579] gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171] Length = 107 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|292491245|ref|YP_003526684.1| hypothetical protein Nhal_1128 [Nitrosococcus halophilus Nc4] gi|291579840|gb|ADE14297.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 128 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ER++ N + R LTQ ++ + G +QS+++ +E G+ + + +A L+ Sbjct: 55 VERLLEGENPIKVWRTYRGLTQHDLAEQAGLSQSYLAMMEKGEREGTVKALKRIAKALNV 114 Query: 76 PLWKLL 81 + L+ Sbjct: 115 DIDDLV 120 >gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 129 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKEA LTQKE+ ++ G ++ I E G+ + + + L+ + LL Sbjct: 3 FAKRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQRDPDTETLQKLSDIFGVSVDYLL 62 >gi|228918784|ref|ZP_04082182.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840856|gb|EEM86100.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 65 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N +RKE ++Q+ + G ++++ISE+E K N+ I +A +L T + + P Sbjct: 2 NKIAELRKEKLMSQETLAGLVGLSRTYISEIENNKKQPNVKLAIKIAESLGTNVESIFGP 61 >gi|229133280|ref|ZP_04262110.1| hypothetical protein bcere0014_21990 [Bacillus cereus BDRD-ST196] gi|228650191|gb|EEL06196.1| hypothetical protein bcere0014_21990 [Bacillus cereus BDRD-ST196] Length = 185 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803] gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803] Length = 277 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + IS+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|297195701|ref|ZP_06913099.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718957|gb|EDY62865.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 201 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N ++ R E T + R+G ++ I ++E ++ ++ + LA L + Sbjct: 20 QSLARNLKHWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 79 Query: 80 LL 81 LL Sbjct: 80 LL 81 >gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 183 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|124008859|ref|ZP_01693546.1| repressor [Microscilla marina ATCC 23134] gi|123985547|gb|EAY25439.1| repressor [Microscilla marina ATCC 23134] Length = 120 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++IR + L+QKE+ G + S E GK+ ++ + +A L+ L L Sbjct: 3 FAKKLKDIRSKKSLSQKEVALSVGIDRGQYSRFENGKAEPSLATIKKIAQALNVKLSDLF 62 >gi|163940218|ref|YP_001645102.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229167265|ref|ZP_04295006.1| hypothetical protein bcere0007_22290 [Bacillus cereus AH621] gi|163862415|gb|ABY43474.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616303|gb|EEK73387.1| hypothetical protein bcere0007_22290 [Bacillus cereus AH621] Length = 185 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 183 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 176 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N + +RK+ ++Q+E+ ++ +S+ E G ++ ++IL+ L+ L Sbjct: 1 MAFADNLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIGYPEVEKLLILSSQLNVSLDS 60 Query: 80 LL 81 L+ Sbjct: 61 LM 62 >gi|296118143|ref|ZP_06836724.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295968701|gb|EFG81945.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 192 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I R +R + + R + S +S +ETG+ I++D ++ +A L T L + Sbjct: 8 LIVRQRIRGLRLARNWSLDTLARRCEISTSTLSRIETGRQRISLDLLVTIAQALGTSLDQ 67 Query: 80 LLKP 83 L++P Sbjct: 68 LVEP 71 >gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 107 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229150628|ref|ZP_04278842.1| hypothetical protein bcere0011_21790 [Bacillus cereus m1550] gi|228632715|gb|EEK89330.1| hypothetical protein bcere0011_21790 [Bacillus cereus m1550] Length = 185 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N ++IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|291543303|emb|CBL16412.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 120 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + +TQ E+ R + +++S +ET ++D ++ +A+ L+ L Sbjct: 7 LLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKFCSLDTLVRVANELNVSTDDL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|288959830|ref|YP_003450170.1| transcriptional regulator [Azospirillum sp. B510] gi|288912138|dbj|BAI73626.1| transcriptional regulator [Azospirillum sp. B510] Length = 210 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R +R L+ + + +G +++ + ++E G+S I + +A LD L L Sbjct: 29 ILGRHLRRLRTRQGLSLERLARLSGVSRAMLGQIELGRSAPTITVLWKIARALDVTLASL 88 Query: 81 LK 82 + Sbjct: 89 TR 90 >gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] Length = 197 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ + R +RK+ LT KE+ TG+ IS++E + ++ + +A LD Sbjct: 1 MYGSRIREMRKKRGLTLKEVAEATGYTIGHISQIERDLKSPSLVALRKIAVCLD 54 >gi|317501888|ref|ZP_07960073.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896778|gb|EFV18864.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 69 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N + +RKE KL+Q E+ G +++ IS +ETG+ ++L LD Sbjct: 3 EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI] gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 107 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|296122391|ref|YP_003630169.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014731|gb|ADG67970.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 82 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 34/65 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F NFR RK LTQK++ + G + +S +E+ +S+ + + + + A + Sbjct: 7 RTVFARNFRLQRKARGLTQKQLAEKIGVTAAQVSHIESQRSSPSFEVIFMSARVFNLSPA 66 Query: 79 KLLKP 83 LL P Sbjct: 67 ALLIP 71 >gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1] gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1] gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar finitimus YBT-020] Length = 107 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|163792697|ref|ZP_02186674.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] gi|159182402|gb|EDP66911.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] Length = 192 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R +RK +T + + TG + ++S++ETGK I + +A + Sbjct: 3 ELIGPRLRQLRKRRGVTLETLAAGTGLTKGYLSKIETGKMVPPIATLSRIAQAIG 57 >gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 114 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 8 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|219666716|ref|YP_002457151.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536976|gb|ACL18715.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 110 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWK 79 F N +N+RK+ K+TQ+++ R G ++IS++ETG + + +I +A L T + Sbjct: 4 FGNTLKNLRKQHKITQRDLAERVGVDFTYISKIETGAIANPPSEKTIIQIAKVLGTNADE 63 Query: 80 LL 81 L+ Sbjct: 64 LI 65 >gi|296120086|ref|ZP_06838640.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967240|gb|EFG80511.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306] Length = 182 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75 F N R IR+ +TQ+ + G +++ + LE ++ + + LA L+ Sbjct: 17 FSQNLRKIRRSRGVTQQALAEIAGLSRTQVCNLERNENNSGTSADPALSTVYKLALALEV 76 Query: 76 PLWKLL 81 P LL Sbjct: 77 PPVLLL 82 >gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 256 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I R + + R LTQK + + G +Q+ I ++ETGK+ ++ LA+ L Sbjct: 20 IARMKTTLAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKANQTT-KLVELANALK 78 Query: 75 TPLWKL 80 L Sbjct: 79 VKPEWL 84 >gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] Length = 212 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + + + + LD +LL Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 >gi|328948641|ref|YP_004365978.1| hypothetical protein Tresu_1790 [Treponema succinifaciens DSM 2489] gi|328448965|gb|AEB14681.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 105 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F++N + RKE +TQ+++ S+I ++ET K ++ + +A +L ++L Sbjct: 7 FISNLKRFRKEQNMTQEKLAELCKTDTSYIGQIETKKRFPSLSFVERIAASLKVEPYRLY 66 Query: 82 KP 83 P Sbjct: 67 MP 68 >gi|295136243|ref|YP_003586919.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294984258|gb|ADF54723.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 79 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +NF IRK L+ + + + + ++++E GK I + + LA L+ +L Sbjct: 14 FGSNFGKIRKMKNLSFRALSQKCDLDYADLNKIEKGKRNITLTTIAELARGLNVHPKELF 73 >gi|269794016|ref|YP_003313471.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096201|gb|ACZ20637.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 489 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R+ R A LT +++ RTG S +S +E G + + +A Sbjct: 5 SERTTSTDLLTLGRRVRHFRTGAGLTLEDLAERTGVDTSQLSRIENGLREPRLSLLDAVA 64 Query: 71 HTLDTPLWKLL 81 L P+ LL Sbjct: 65 GALGVPVATLL 75 >gi|158522721|ref|YP_001530591.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511547|gb|ABW68514.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 112 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + +R L Q++I + GF + LE G+ +++ + L D L Sbjct: 7 KKRLGIRLKELRLAKNLKQEDIEKKHGFNYRYYGRLERGEINPSLETLNKLCEIFDVSLA 66 Query: 79 KLLK 82 L + Sbjct: 67 ALFQ 70 >gi|150399854|ref|YP_001323621.1| XRE family transcriptional regulator [Methanococcus vannielii SB] gi|150012557|gb|ABR55009.1| putative transcriptional regulator, XRE family [Methanococcus vannielii SB] Length = 183 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRKE L+ + TG ++S + ++E + I ++ +A+ L L Sbjct: 7 VISKNLKKIRKEKGLSLDALSTLTGVSKSMLGQIEREEVNPTISTILKIANGLKVSFTSL 66 Query: 81 LK 82 +K Sbjct: 67 MK 68 >gi|118472940|ref|YP_888581.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118174227|gb|ABK75123.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 192 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H DA++R+R R +R E LT +++ +R S +S LE+GK + +D++ L Sbjct: 8 HDVDALVRQR------LRELRTERGLTLEDVASRAQIDVSTLSRLESGKRRLALDHLPRL 61 Query: 70 AHTLDTPLWKLLK 82 A L LL+ Sbjct: 62 ATALSVTTDDLLR 74 >gi|30018346|ref|NP_829977.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|218235456|ref|YP_002364925.1| DNA-binding protein [Bacillus cereus B4264] gi|228919025|ref|ZP_04082405.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956516|ref|ZP_04118313.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107761|ref|ZP_04237398.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|229125592|ref|ZP_04254625.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|229142881|ref|ZP_04271323.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|229148484|ref|ZP_04276741.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|296500908|ref|YP_003662608.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29893886|gb|AAP07178.1| Transcriptional regulator, Xre family [Bacillus cereus ATCC 14579] gi|218163413|gb|ACK63405.1| DNA-binding protein [Bacillus cereus B4264] gi|228635026|gb|EEK91598.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|228640593|gb|EEK96981.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|228657909|gb|EEL13714.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|228675734|gb|EEL30941.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|228803206|gb|EEM50027.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840674|gb|EEM85935.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321960|gb|ADH04888.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L+ + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 EELM 65 >gi|312794245|ref|YP_004027168.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181385|gb|ADQ41555.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 129 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Query: 10 HLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 H +D L +F + +R+ L+ ++ QS +S +E+G+ + +D + Sbjct: 5 HNTDTDLGSDFMFDVGRRVKELRELRGLSMTKLSKIARVGQSTLSYIESGRQSPTVDVLE 64 Query: 68 ILAHTLDTPLWKLLKP 83 + L L + P Sbjct: 65 RICSALGITLAEFFSP 80 >gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + IR + ++ + TG ++S +S LETG+ +++ ++ +A PL +L+ Sbjct: 14 VGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQRRPSLELLLPIAQAHQVPLDELV 73 >gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] Length = 114 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF + +RK LTQ E+ +QS I ETG+ +I + +A + L L Sbjct: 3 IFGQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQPDIQTLASIASFFNVSLDVL 62 Query: 81 L 81 + Sbjct: 63 V 63 >gi|167760938|ref|ZP_02433065.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] gi|167661541|gb|EDS05671.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] Length = 112 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK +TQ ++ + + S+IS +E G S++ +D +A L ++ Sbjct: 8 GQRIQEIRKAQGITQNQLAEKLHVSPSFISRIENGSSSLTVDFACEIADALHVARQEIF 66 >gi|297153608|gb|ADI03320.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 172 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ L+ E+ R+ + +SELE G+ ++ + L L+ PL Sbjct: 7 VGLRLRELREAQDLSLSELARRSAIGKGTLSELEGGRRNPTLETLYALTTALNVPL 62 >gi|254476881|ref|ZP_05090267.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214031124|gb|EEB71959.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 188 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71 >gi|210610577|ref|ZP_03288503.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] gi|210152436|gb|EEA83442.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] Length = 147 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +K + A+ +E ++ N R RKE +Q+ + ++G + + IS +E G+ ++ Sbjct: 8 GKKGGTTLGNRAVSQELIMLGNRIREYRKERGFSQEILAEKSGVSTNTISRIEGGQMAMS 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + + L LL Sbjct: 68 VGILQRIVKALGVDANVLL 86 >gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] Length = 114 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + F+ R+++ LTQ+ + + G + ++IS +E G + +++ +I++ + + Sbjct: 7 KKAVGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVNFPSLEKLILIINEIGATAD 66 Query: 79 KLLK 82 ++ Sbjct: 67 QIFT 70 >gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans NG80-2] gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 260 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + IS+ E G+ + ++++A+ + + LL Sbjct: 3 FGEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLLMIANIFEVSIDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R+ L+ E+ R G A+S +S+LETG +++ + LA LD P+ +L Sbjct: 14 LLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRL 73 Query: 81 L 81 + Sbjct: 74 I 74 >gi|77459247|ref|YP_348754.1| XRE family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383250|gb|ABA74763.1| putative HTH-type regulatory potein [Pseudomonas fluorescens Pf0-1] Length = 84 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ N R +R+ LTQ+++ ++++S++E ++ + LA+ + Sbjct: 9 RLQLAENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLANIFEITAD 68 Query: 79 KLL 81 +LL Sbjct: 69 QLL 71 >gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 142 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + I E KS +IDN+I+L+ + L Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKSYPDIDNLILLSEMYNVTLDA 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|294085273|ref|YP_003552033.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664848|gb|ADE39949.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 208 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 5 KRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 + + ER R RK+ +T E+ + TG + +S++E G + Sbjct: 2 PANLNQDPHRLKDEREKILELAIGREVRAHRKQQNITVAELAHLTGISIGMVSKIENGNT 61 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + ++ + L++ L L + Sbjct: 62 SPSLSTLQTLSNALGVTLTSFFR 84 >gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains [Thermococcus sibiricus MM 739] Length = 186 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RKE +TQ+E+ R G Q++I++LETGK + + L Sbjct: 11 KEIKRFRKELGITQEELAQRAGVTQAYIAKLETGKVDPRLSTFNRILQALK 61 >gi|225869491|ref|YP_002745438.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225698895|emb|CAW91878.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] Length = 120 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R E +L+Q + + ++ IS+ E G +T +++N++ LA L+ L +L+ Sbjct: 4 FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELV 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|115379556|ref|ZP_01466646.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|310821728|ref|YP_003954086.1| XRE family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363441|gb|EAU62586.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|309394800|gb|ADO72259.1| Transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 DA + N R +R + L+ + + +G +++ + ++E G+S I+ + +A Sbjct: 94 PDADQDLAPVVGKNLRRLRIQRGLSLERLSKASGVSRAMLGQIELGQSAPTINVLWKIAR 153 Query: 72 TLDTPLWKLL 81 LD P L+ Sbjct: 154 ALDLPFSALI 163 >gi|71277752|ref|YP_270505.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71143492|gb|AAZ23965.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 209 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H ++ + E+ + IR E KLT +E RTG A+S +S++E + + M L Sbjct: 18 HENNKRVVEKATIGVQLKAIRTENKLTLEEASKRTGLARSTLSKIENEQISPTFSVMQKL 77 Query: 70 AHTLDTPLWKLLK 82 A L+ L +L Sbjct: 78 ASGLNIELPQLFT 90 >gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP R P D + + R +R + +E+ R +QS +S +E G Sbjct: 1 MPCRHSMLPMTQDNGELD-SLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGHRR 59 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 + +D ++ LA LDT L +L++ Sbjct: 60 LALDQLVTLARALDTSLDQLVE 81 >gi|269928987|ref|YP_003321308.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788344|gb|ACZ40486.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 378 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R A L+Q+ + R G + +S +E G+ N + LA L P+ +L + Sbjct: 12 SQVRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEELFR 70 >gi|160942751|ref|ZP_02089992.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] gi|158445916|gb|EDP22919.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] Length = 220 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +RK LTQ E+ + +S E G +I+ + LA L L L+ Sbjct: 6 FGNYLSRMRKAQGLTQAELAEQLHVTDKAVSRWERGIGLPDINTLEPLADALGLTLADLM 65 >gi|17230454|ref|NP_487002.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17132056|dbj|BAB74661.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 102 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R L+QKE+ R G ++S++SE+E+GK +D + + D P Sbjct: 6 LRLMRVFHDLSQKEMAERLGISKSYLSEIESGKKIPTLDLLNRYSGLFDIP 56 >gi|146294622|ref|YP_001185046.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145566312|gb|ABP77247.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 106 Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 D +L+ + F + R E Q+ + ++ A+S++S +E G + +I ++ L Sbjct: 25 VNEDEVLKMGIAFGRAVKLRRVELGYNQEGLADKAELARSFVSSVERGVAKASIASVWKL 84 Query: 70 AHTLDTPLWKL 80 A L+ L Sbjct: 85 AQALNCNPSDL 95 >gi|291619732|ref|YP_003522474.1| YdcN [Pantoea ananatis LMG 20103] gi|291154762|gb|ADD79346.1| YdcN [Pantoea ananatis LMG 20103] Length = 183 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A LT E+ R G A+S +S+LE G I+ + L L+ P +L Sbjct: 8 IIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARL 67 Query: 81 LKP 83 ++P Sbjct: 68 MEP 70 >gi|256599670|pdb|3G5G|A Chain A, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599671|pdb|3G5G|B Chain B, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599672|pdb|3G5G|C Chain C, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599673|pdb|3G5G|D Chain D, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599674|pdb|3G5G|E Chain E, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599675|pdb|3G5G|F Chain F, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599676|pdb|3G5G|G Chain G, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599677|pdb|3G5G|H Chain H, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599678|pdb|3G5G|I Chain I, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599679|pdb|3G5G|J Chain J, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599680|pdb|3G5G|K Chain K, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599681|pdb|3G5G|L Chain L, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599682|pdb|3G5G|M Chain M, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i gi|256599683|pdb|3G5G|N Chain N, Crystal Structure Of The Wild-Type Restriction-Modification Controller Protein C.Esp1396i Length = 99 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR E +TQ+++ ++ +++IS +E + I ++ ++ L+ Sbjct: 33 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 83 >gi|229084977|ref|ZP_04217229.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] gi|228698293|gb|EEL51026.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] Length = 193 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E +T KE+ ++ + ++S+LE G +TI +D++ LA + L Sbjct: 4 GMEIKKLRAEKGITLKELSEKSELSVGFLSQLERGLTTIAVDSLEKLADVFEVHLTHFF 62 >gi|332976056|gb|EGK12926.1| DNA-binding protein [Desmospora sp. 8437] Length = 179 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ T K++ RT + S++S++E G S++ I ++ +A P+ + Sbjct: 6 NEIRRLRQSRGYTLKDLSERTELSVSFLSQVERGTSSLAITSLKKIADAFGVPIRQFF 63 >gi|323495755|ref|ZP_08100825.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM 21326] gi|323319222|gb|EGA72163.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM 21326] Length = 506 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63 LS +++R+ RN+RK LT +++ R + S++S +E GK +I Sbjct: 3 LSKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSI 62 Query: 64 DNMIILAHTLDT-PLWKL 80 D + ++A P W L Sbjct: 63 DMLEVIAEVFQKDPAWFL 80 >gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 511 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK+ +TQ ++ +QS I +E+G ++++ + +A L++PL Sbjct: 11 GRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQNLSLETINRIAGALESPL 65 >gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 190 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ R I R IRKE +TQ+E+ + G Q++I++LE GK + + L Sbjct: 2 VIIPRPIDPKEIRRIRKELGITQEELAEKAGVTQAYIAKLEAGKVDPRLSTFNRILQAL 60 >gi|196035713|ref|ZP_03103116.1| DNA-binding protein [Bacillus cereus W] gi|228913383|ref|ZP_04077016.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925881|ref|ZP_04088965.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932124|ref|ZP_04095015.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|195991680|gb|EDX55645.1| DNA-binding protein [Bacillus cereus W] gi|228827552|gb|EEM73295.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833896|gb|EEM79449.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846292|gb|EEM91311.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 66 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQQLAAKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|110679954|ref|YP_682961.1| transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109456070|gb|ABG32275.1| transcriptional regulator HTH-3 family, putative [Roseobacter denitrificans OCh 114] Length = 207 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ + G A+S +S++E G+ + D + LA L+ + +L Sbjct: 27 LGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|22855027|ref|NP_690787.1| immunity repressor [Bacillus phage phi105] gi|133375|sp|P06153|RPC_BPPH1 RecName: Full=Immunity repressor protein gi|1196714|gb|AAA88396.1| unknown protein [Bacillus phage phi105] gi|4126640|dbj|BAA36660.1| immunity repressor [Bacteriophage phi-105] gi|295002743|gb|ADF59164.1| immunity repressor [Bacillus phage phi105] gi|224753|prf||1112178A ORF 1 Length = 144 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + IRKE KLTQ ++ + ++S+++++E + ++ + +A L + Sbjct: 1 MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 60 Query: 80 LL 81 ++ Sbjct: 61 IV 62 >gi|288906392|ref|YP_003431614.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306832439|ref|ZP_07465592.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979406|ref|YP_004289122.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733118|emb|CBI14699.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304425479|gb|EFM28598.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179334|emb|CBZ49378.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 166 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK L+Q+++ R ++ IS+ E G + + DN+++L+ P+ LL Sbjct: 3 FGEKLKQLRKANHLSQEKLSERIHVSRQAISKWEQGSAIPDTDNIVLLSKFFQVPIEYLL 62 >gi|271969477|ref|YP_003343673.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512652|gb|ACZ90930.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 92 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 31/67 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE ++ N R E L+Q E+ R G Q +S LETG T + + LA LD Sbjct: 22 REALLLGQQVYNRRTELGLSQAELAERAGMTQPQVSRLETGGVTPTLALLRRLAKALDAE 81 Query: 77 LWKLLKP 83 L KP Sbjct: 82 LNVTFKP 88 >gi|153941561|ref|YP_001393012.1| hypothetical protein CLI_A0008 [Clostridium botulinum F str. Langeland] gi|152937441|gb|ABS42938.1| conserved domain protein [Clostridium botulinum F str. Langeland] gi|295320987|gb|ADG01364.1| hypothetical protein CBF_P0008 [Clostridium botulinum F str. 230613] Length = 64 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q+++ + G + IS +E GK ++ I + L+ L L Sbjct: 4 RKMKIARVECDLSQQQLAEKVGITRQTISMIEAGKYNPSLKLCIGICKVLNKTLNDLF 61 >gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 300 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +T E+ R+G + + ISE+E +ST ++ + LA L+ LL Sbjct: 73 VGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRSTASLKTLEKLAAVLEVSTSSLL 132 Query: 82 K 82 + Sbjct: 133 R 133 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ + +R++ LTQKE+ + G + S I ++ET + ++ + LA L Sbjct: 136 QQDSLGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSSLAEALGVS 194 Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M + +R++ + +E+ +R A + + E+E G +++ + +A L Sbjct: 1 MTIGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGTRRLSLATLKEVAAILGV 56 >gi|322374196|ref|ZP_08048729.1| putative transcriptional repressor [Streptococcus sp. C150] gi|321276901|gb|EFX53973.1| putative transcriptional repressor [Streptococcus sp. C150] Length = 66 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R LTQ+ + + G ++ IS +E G I+ I + TLD L +L Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61 >gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 184 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + +R+E KL+ + +G ++S + ++E G + I + +A+ L Sbjct: 6 HIVAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTNPTISTLWKIANGLKISFTS 65 Query: 80 LL 81 L+ Sbjct: 66 LM 67 >gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + LT + + RTG +S++S++E +ST +I + +A LD + +L Sbjct: 5 LRAVRTQRGLTLEALAERTGLTKSYLSKIERRQSTPSIAVALKVAKALDVDVGQLF 60 >gi|228989826|ref|ZP_04149806.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228996017|ref|ZP_04155672.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|229003633|ref|ZP_04161448.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228757599|gb|EEM06829.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228763713|gb|EEM12605.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|228769973|gb|EEM18556.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 72 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + ++ L L Sbjct: 10 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNQTLNDLF 67 >gi|134297168|ref|YP_001120903.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140325|gb|ABO56068.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 183 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|126731243|ref|ZP_01747050.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708154|gb|EBA07213.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 206 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE T ++ + G A+S +S++E G+ + D + LA L+ + +L Sbjct: 26 LGLRVRELRKEKDWTLEQAAKKAGLARSTLSKIENGQMSPTYDALKKLATGLEISVPQLF 85 Query: 82 KP 83 P Sbjct: 86 TP 87 >gi|107023923|ref|YP_622250.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691009|ref|YP_836632.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734344|ref|YP_001766291.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894112|gb|ABF77277.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116649098|gb|ABK09739.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169817586|gb|ACA92169.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 183 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|260595940|ref|YP_003208511.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032] gi|260215117|emb|CBA26887.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032] Length = 182 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R A L+ E+ R G A+S +S+LE G +++ + L LD P +L Sbjct: 7 VIAKSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 66 Query: 81 LKP 83 ++P Sbjct: 67 MEP 69 >gi|146294918|ref|YP_001185342.1| helix-turn-helix domain-containing protein [Shewanella putrefaciens CN-32] gi|145566608|gb|ABP77543.1| helix-turn-helix domain protein [Shewanella putrefaciens CN-32] Length = 68 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK ++Q+++ T +S++ +E G+ I ++ LA L + LL Sbjct: 8 FGAKLREERKRRGISQEKVALLTEIDRSYMGRIERGEVNITLEKAYQLAEALGCDIRVLL 67 >gi|325520437|gb|EGC99543.1| putative DNA-binding protein [Burkholderia sp. TJI49] Length = 76 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + R +R+ +Q+++ G +S++ E+E G++ +I +A D Sbjct: 8 FGSTVRRLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTAHKIARAFDV 61 >gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T ++ TG ++S +S LE+G+ ++ ++ LA D PL L+ Sbjct: 12 VGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVPLDDLV 71 >gi|297201607|ref|ZP_06919004.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|297147931|gb|EDY55056.2| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 202 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Query: 5 KRDEPHLSDAILRERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + D + R+ + R R A L+ E+ R G A+S +S+LE Sbjct: 8 RTDGANSMSDSPPPRLPLDWIAASLRRERTRAGLSLSELAKRAGIAKSTLSQLEAAGGNP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 +++ + L L P L++P Sbjct: 68 SVETLWALGVALGVPFSALVEP 89 >gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 211 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +++ + + +G A + +S +E G+++ ++ + LA L P+ Sbjct: 22 VGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPISAFF 81 Query: 82 KP 83 P Sbjct: 82 TP 83 >gi|145221479|ref|YP_001132157.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213965|gb|ABP43369.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 83 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 1 MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP R ++ P R + R +R +TQ+ + R+G ++ + ++E G+ Sbjct: 1 MPTRPSQNNPERVAQWEHWRRLVGAKIRELRIARDMTQEALALRSGVTRNVLIDVEHGRR 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + + + +A LD + +LL Sbjct: 61 GLLYERLFDIADALDVNVAELL 82 >gi|86606494|ref|YP_475257.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab] gi|86555036|gb|ABC99994.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab] Length = 550 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + + + R++ ++Q+E+ R G +QSW+ ++E G+ I++++ Sbjct: 477 PEDPKDFSSGKALRGADISAARQQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQR 536 Query: 69 LAHTL 73 L L Sbjct: 537 LIKAL 541 >gi|37676355|ref|NP_936751.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200897|dbj|BAC96721.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 232 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + +R +T +E RTG A+S +S++E + + M LAH L + Sbjct: 49 EPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLKIDM 108 Query: 78 WKLLKP 83 +L +P Sbjct: 109 PQLFEP 114 >gi|322805033|emb|CBZ02593.1| putative transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 182 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R + L+ ++ +G ++ +S++E G+S I+ + +A+ L KL Sbjct: 6 IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|229589439|ref|YP_002871558.1| putative HTH-type regulatory protein [Pseudomonas fluorescens SBW25] gi|312961102|ref|ZP_07775607.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229361305|emb|CAY48169.1| putative HTH-type regulatory potein [Pseudomonas fluorescens SBW25] gi|311284760|gb|EFQ63336.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 84 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ N R +R+ LTQ+++ ++++S++E ++ + LA+ + Sbjct: 9 RLQLAENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLANIFEITAD 68 Query: 79 KLL 81 +LL Sbjct: 69 QLL 71 >gi|226947977|ref|YP_002803068.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|226842052|gb|ACO84718.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 182 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R + L+ ++ +G ++ +S++E G+S I+ + +A+ L KL Sbjct: 6 IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|218780458|ref|YP_002431776.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761842|gb|ACL04308.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 209 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +TQ ++ +G +++ I++LE G+ + +I L+ +LD+ W LL Sbjct: 13 LAKNIVVARSALGITQGDLAKDSGISRATIAQLEAGEGDPKLSTLISLSKSLDSTHWHLL 72 Query: 82 K 82 Sbjct: 73 T 73 >gi|170756638|ref|YP_001780356.1| hypothetical protein CLD_0038 [Clostridium botulinum B1 str. Okra] gi|169121850|gb|ACA45686.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 182 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R + L+ ++ +G ++ +S++E G+S I+ + +A+ L KL Sbjct: 6 IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L] gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L] gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] Length = 107 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 123 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + R + + +RK A L+Q E+ G I E G +I+ +I L+ Sbjct: 9 DTVDSLRSVVGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGIHMPSIEQLIKLSTA 68 Query: 73 LDTPLWKLL 81 L +LL Sbjct: 69 LKVSPAELL 77 >gi|307545860|ref|YP_003898339.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217884|emb|CBV43154.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 179 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ + ++ G A+S +S LE G +D + LA L+ P L+ Sbjct: 12 LGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGNPTLDTIWRLAVQLNVPFGTLV 71 Query: 82 KP 83 P Sbjct: 72 AP 73 >gi|229095345|ref|ZP_04226337.1| Transcriptional regulator [Bacillus cereus Rock3-29] gi|229101455|ref|ZP_04232196.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|229114294|ref|ZP_04243715.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228669314|gb|EEL24735.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228681943|gb|EEL36079.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|228688204|gb|EEL42090.1| Transcriptional regulator [Bacillus cereus Rock3-29] Length = 66 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|116328428|ref|YP_798148.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331157|ref|YP_800875.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121172|gb|ABJ79215.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124846|gb|ABJ76117.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 102 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE IF N RK A LTQ EI R G QS+IS++E+G+ +++ + L Sbjct: 8 REAKIFCKNLIAARKSADLTQLEIAKRLGEPQSYISKIESGERRLDVIEFWRIYKILGKS 67 >gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 251 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N+ + IRK K+TQKE+ TGF Q+ IS E G ++ ++ A L +L Sbjct: 3 ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1] gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1] Length = 247 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N+ + IRK K+TQKE+ TGF Q+ IS E G ++ ++ A L +L Sbjct: 3 ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|300725156|ref|YP_003714484.1| putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297631701|emb|CBJ92414.1| Putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 182 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R L+ E+ R G A+S +S+LE G +++ + L L+ P +L Sbjct: 7 VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|254246992|ref|ZP_04940313.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] gi|124871768|gb|EAY63484.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] Length = 189 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R EA L+Q + +R + S+IS LE+GK +I+ +I +A L+ +L Sbjct: 26 GTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESGKRYPSIEMLIRIALALNIKPGLML 84 >gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+++ + G ++ IS E S ++ ++ + + L +L+K Sbjct: 6 GHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSLNQLIK 65 >gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 143 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RKE K TQ+E+ + + IS E G T ++D +I +++ + + Sbjct: 1 MSFPYRLKQLRKEHKWTQEELGAKLNLTKVSISGYENGNRTPDMDTLIKISNVFNVSIDY 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|228943003|ref|ZP_04105508.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975941|ref|ZP_04136462.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977442|ref|ZP_04137836.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228782266|gb|EEM30450.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228783777|gb|EEM31835.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816667|gb|EEM62787.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938467|gb|AEA14363.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61 >gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI] gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 149 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055] gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 149 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 189 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] Length = 149 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 149 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] Length = 149 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|154482414|ref|ZP_02024862.1| hypothetical protein EUBVEN_00081 [Eubacterium ventriosum ATCC 27560] gi|149736733|gb|EDM52619.1| hypothetical protein EUBVEN_00081 [Eubacterium ventriosum ATCC 27560] Length = 79 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N RK KLTQ ++ +S IS +E GK ++ D + L L +L Sbjct: 17 FGLNVVYYRKREKLTQLQLAELVDIDRSHISAIELGKVGVSFDVIFKLCDVLKITPKELF 76 >gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western North America USA6153] gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum] gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str. Australia 94] gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames Ancestor'] gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] Length = 149 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|89097356|ref|ZP_01170246.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088179|gb|EAR67290.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 115 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + E+ ++G ++S++S +E + ++ + LA TL T + + Sbjct: 1 MVGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDIQKNPSLQVLSKLAATLGTSVEE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 209 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D+++ LA LDT L +L Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|319936912|ref|ZP_08011323.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808011|gb|EFW04586.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 69 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++I NN + R E ++Q E+ G ++ IS +ETG+ +IL LD Sbjct: 3 DQLILRNNLKEARHEKNISQTELAKMVGVSRQTISSIETGQFNPTAKLALILCIALDKTF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|294498706|ref|YP_003562406.1| helix-turn-helix domain-containing protein [Bacillus megaterium QM B1551] gi|294348643|gb|ADE68972.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 87 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R E ++Q+++ + +++IS LE GK I+ + +++ L+ +K++ Sbjct: 7 FGIVIKKYRLERSMSQEKLAFGSDLDRTFISLLERGKRKPTINTLFSISNVLEVKPYKIV 66 Query: 82 K 82 K Sbjct: 67 K 67 >gi|255598541|ref|XP_002537032.1| conserved hypothetical protein [Ricinus communis] gi|223517747|gb|EEF25351.1| conserved hypothetical protein [Ricinus communis] Length = 318 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D +R++ R R+ L+Q+++ G ++ ++ +E G + + L+ Sbjct: 3 PDPTDEQRLLLAQRLREAREYVGLSQEDVATALGISRPAVTNIEAGTRKVEAVELDKLSQ 62 Query: 72 TLDT 75 Sbjct: 63 LYGK 66 >gi|153004833|ref|YP_001379158.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028406|gb|ABS26174.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 112 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D E F R R+ LTQ+ + + +++S +E G ++ +A Sbjct: 41 DPRRDELRRFGERVREQRRTRGLTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARA 100 Query: 73 LDTPLWKLL 81 L P ++ Sbjct: 101 LGIPASSIV 109 >gi|118588049|ref|ZP_01545459.1| DNA binding protein, putative [Stappia aggregata IAM 12614] gi|118439671|gb|EAV46302.1| DNA binding protein, putative [Stappia aggregata IAM 12614] Length = 186 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L+ + + +G ++S +S++E G+S + ++ L L+ LL Sbjct: 13 RLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLL 69 >gi|89897034|ref|YP_520521.1| hypothetical protein DSY4288 [Desulfitobacterium hafniense Y51] gi|89336482|dbj|BAE86077.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK KL+ K++ +T S +S++E ++ ++ + +A L P+ Sbjct: 40 LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 99 >gi|327396552|dbj|BAK13973.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 183 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A LT E+ R G A+S +S+LE G I+ + L L+ P +L Sbjct: 8 IIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARL 67 Query: 81 LKP 83 ++P Sbjct: 68 MEP 70 >gi|312961935|ref|ZP_07776432.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] gi|311283745|gb|EFQ62329.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] Length = 178 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ +T +++ TG +S++S++E G S+ +I + LA L+ +L Sbjct: 2 AVQLRILRKKMGITLEQLAGLTGLTKSYLSKVERGVSSPSIAVALKLAKALNAQAEELF 60 >gi|302869357|ref|YP_003837994.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504168|ref|YP_004083055.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302572216|gb|ADL48418.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410787|gb|ADU08904.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 207 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + +E+ R+G ++ + ++E ++ +I + +A + +LL Sbjct: 15 VARQVRDLRAARGWSFEELAGRSGVSKGMLVQIEGARTNPSIGTLCRVADAFGVSIARLL 74 Query: 82 KP 83 +P Sbjct: 75 EP 76 >gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R A ++ + +G + S +S +E G + +++ + LA+ L P + Sbjct: 7 GAQVKALRMAADVSGGALAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRFF 65 >gi|190573333|ref|YP_001971178.1| putative HTH transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011255|emb|CAQ44867.1| putative HTH transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 98 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R + + F R +R E + Q+ + +R G +S + ++E G Sbjct: 8 PGRPAGATTFDAELA---LAFGATVRGLRVERGIAQESLAHRAGIERSHMGKIERGAHMP 64 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + +A L+ + +L+ Sbjct: 65 TLAIIFKIAGALECSVAELM 84 >gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 213 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T E+ RTG +S +S LE G ++ ++ LA PL +L+ Sbjct: 24 VGPRLRELRRRHGMTLAELAERTGINESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 83 >gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301] Length = 264 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F +N R ++Q ++ + G +S IS LE+GK ++D + LA L+ Sbjct: 40 FAFRLKNARVARDMSQAQLADLVGRDKSAISLLESGKRGASVDFVARLAKALNV 93 >gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 179 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R E +LTQ+E+ NR ++ +IS+LE ++ +I ++ + L T L + Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +LTQ E+ R + +IS++E ++ +I ++ L L T + K Sbjct: 4 GEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDLLEALGTDVKKFF 62 >gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 185 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I NN + +R++ KL+ ++ TG +++ + ++E G+S+ +I + +A+ L Sbjct: 6 LILANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLSFSS 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|328948203|ref|YP_004365540.1| hypothetical protein Tresu_1336 [Treponema succinifaciens DSM 2489] gi|328448527|gb|AEB14243.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 107 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + IRK L+Q E+ + G + I+ +E + + MI +A+ L+T ++ L P Sbjct: 13 NLKKIRKAKNLSQFELAEKAGLSDQTINSIEGKRLWPSDKTMIKIANALETDAYQFLIP 71 >gi|315647563|ref|ZP_07900665.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315277002|gb|EFU40343.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 184 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I +N +++R++ KL+ ++ TG +++ + ++E G+S+ +I + +A+ L Sbjct: 6 LILAHNLKSLREQRKLSLDKVAELTGISKTMLGQIERGESSPSITTVWKIANGLKLSFTS 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 514 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 27/70 (38%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R R + R +RKE ++Q ++ G + S+++++E + + + Sbjct: 19 RASQSPRTPDETNRNFVGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAV 78 Query: 66 MIILAHTLDT 75 + + Sbjct: 79 LQKITRAFGV 88 >gi|86144456|ref|ZP_01062788.1| predicted transcriptional regulator [Vibrio sp. MED222] gi|85837355|gb|EAQ55467.1| predicted transcriptional regulator [Vibrio sp. MED222] Length = 505 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63 LS +++R+ RN+RK LT +++ R + S++S +E GK +I Sbjct: 3 LSKSLVRQSHFLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSI 62 Query: 64 DNMIILAHTLDT-PLWKL 80 D + ++A P W L Sbjct: 63 DMLEVIAQVFQKNPTWFL 80 >gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 172 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ R+ + L+Q + + ++ IS+ E G+ +I+N+I+L+ + + Sbjct: 1 MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|323693691|ref|ZP_08107890.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] gi|323502305|gb|EGB18168.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] Length = 112 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R + K+TQ+ + G ++ +S+ E G S + N+ LA + Sbjct: 46 RKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISVE 105 Query: 79 KLLK 82 +LLK Sbjct: 106 ELLK 109 >gi|320102695|ref|YP_004178286.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC 43644] gi|319749977|gb|ADV61737.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644] Length = 222 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Query: 2 PRR-----KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 P R +R+ ++ ER+ + +R E + +E G ++S +S++E Sbjct: 21 PGRVGSALRREGFIDPSEVVAERLR--QRVKTLRTERNWSLEEFSKACGVSRSMLSQIER 78 Query: 57 GKSTINIDNMIILAHTLDTPLWKLL 81 G++ + M +A L +L+ Sbjct: 79 GEANPTLAVMFRIAQVFGMSLGELI 103 >gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20] gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20] Length = 172 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ R+ + L+Q + + ++ IS+ E G+ +I+N+I+L+ + + Sbjct: 1 MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|238923198|ref|YP_002936713.1| hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238925050|ref|YP_002938566.1| hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|238874872|gb|ACR74579.1| Hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238876725|gb|ACR76432.1| Hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|291530658|emb|CBK96243.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 123 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R + K+TQ+ + G ++ +S+ E G S + N+ LA + Sbjct: 57 RKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISVE 116 Query: 79 KLLK 82 +LLK Sbjct: 117 ELLK 120 >gi|226357088|ref|YP_002786828.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226319078|gb|ACO47074.1| putative transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 129 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E L K++ + ++S+LE G++ +++ + LA + + LL+ Sbjct: 5 ERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLE 63 >gi|225378528|ref|ZP_03755749.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] gi|225209631|gb|EEG91985.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] Length = 131 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R +TQ+E+ R G ++ +S +E G+ + +ID +I L+ L L Sbjct: 43 FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTDYL 102 Query: 81 L 81 L Sbjct: 103 L 103 >gi|332535597|ref|ZP_08411365.1| hypothetical protein PH505_db00030 [Pseudoalteromonas haloplanktis ANT/505] gi|332034981|gb|EGI71502.1| hypothetical protein PH505_db00030 [Pseudoalteromonas haloplanktis ANT/505] Length = 95 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I N + R ++ +Q E+ ++ QS+IS +E+G + + + + H L Sbjct: 15 QPALKIIGLNIKLARTKSGFSQAELADKLNVEQSYISRVESGSVAASCERIYEIIHLLGC 74 Query: 76 PLWKLL 81 + Sbjct: 75 KASDIF 80 >gi|325983748|ref|YP_004296149.1| helix-turn-helix domain-containing protein [Nitrosomonas sp. AL212] gi|325533267|gb|ADZ27987.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212] Length = 120 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N I +E K+T+ E+ + G + S+I+EL K+ ++ + +A LDTPL Sbjct: 4 LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPLPL 63 Query: 80 LL 81 L Sbjct: 64 LF 65 >gi|261366132|ref|ZP_05979015.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282572066|gb|EFB77601.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 116 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ R R + ++TQ+ + G ++ +S+ E+GKS + N++ LA P Sbjct: 48 RQARTLGEVLRQHRTDCRMTQEFVAESLGVSRQAVSKWESGKSDPSTTNLMALARLYGLP 107 Query: 77 LWKLLK 82 +LL+ Sbjct: 108 PEELLR 113 >gi|325980837|ref|YP_004293240.1| helix-turn-helix domain-containing protein [Nitrosomonas sp. AL212] gi|325533342|gb|ADZ28061.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212] Length = 120 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N I +E K+T+ E+ + G + S+I+EL K+ ++ + +A LDTPL Sbjct: 4 LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPLPL 63 Query: 80 LL 81 L Sbjct: 64 LF 65 >gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] Length = 193 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + H + I + + R R++ LT E+ R G A+S +S+LE G +++ Sbjct: 6 PDNSDHAATPI----GLLSASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLE 61 Query: 65 NMIILAHTLDTPLWKLL 81 + LA LD P+ +L+ Sbjct: 62 TLWSLAMALDVPVSRLI 78 >gi|225570223|ref|ZP_03779248.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM 15053] gi|225161018|gb|EEG73637.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM 15053] Length = 215 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +N + IR+ L+ ++ + T ++S +S+LE G+ I + L+ L P+ Sbjct: 37 QLIADNLKEIRRSKALSLEQTSSLTSISKSMLSQLERGEVNPTISTVYKLSLGLKVPVTA 96 Query: 80 LLKP 83 P Sbjct: 97 FTAP 100 >gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] Length = 158 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK LTQ+E+ + ++ +S+ E+G++ ++ ++ L+ + LL Sbjct: 8 FAEKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTDYLL 67 Query: 82 KP 83 KP Sbjct: 68 KP 69 >gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 268 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+++ + G ++ +S+ E+G+S +++ +IIL+ + + L+ Sbjct: 3 LAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|254249104|ref|ZP_04942424.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124875605|gb|EAY65595.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 109 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+++ G +S++ E+E G++ +I +A D + LL Sbjct: 44 FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 103 >gi|21325693|dbj|BAC00314.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 104 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 D L L R RK+ +TQ ++ +G Q+ IS++E G + Sbjct: 26 EDASALITQELASRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLANPTFST 85 Query: 66 MIILAHTLD 74 + LA L Sbjct: 86 LESLASHLG 94 >gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 188 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + +L+ + + + G +S++S++E G S +I + +A L + +L Sbjct: 2 AGRLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSEPSISTALKIAEALGVEVGRLF 60 >gi|167634630|ref|ZP_02392950.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170687459|ref|ZP_02878676.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|254684118|ref|ZP_05147978.1| MerR family transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254741503|ref|ZP_05199190.1| MerR family transcriptional regulator [Bacillus anthracis str. Kruger B] gi|167530082|gb|EDR92817.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170668654|gb|EDT19400.1| DNA-binding protein [Bacillus anthracis str. A0465] Length = 181 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 35/59 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG +++++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKAFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N+ + IRK K+TQKE+ TGF Q+ IS E G ++ ++ A L +L Sbjct: 3 ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|284044840|ref|YP_003395180.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949061|gb|ADB51805.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 93 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 + RR+ D PH + + R F R +R+E LT+ + +G + +I +E G+ Sbjct: 6 LDRRRLDSPHRNPLLER----FGLAARRLREERGLTRDAVGVASGLSPVYIGNIERGEVN 61 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + LA L PL L+ Sbjct: 62 PTLLTQTRLATGLGIPLDALV 82 >gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 195 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R A L+ E+ R G A+S +S+LE+G +++ + L TLD P +LL P Sbjct: 25 LRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGNPSLETLWALCVTLDVPPSRLLDP 82 >gi|290894052|ref|ZP_06557026.1| phage protein [Listeria monocytogenes FSL J2-071] gi|290556396|gb|EFD89936.1| phage protein [Listeria monocytogenes FSL J2-071] Length = 100 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R + TQ+++ N G +++ S +E G++ +++ ++ LA+ + L Sbjct: 1 MFGKKLKKLRNKTNKTQEDLANILGISRAAYSHIENGRNEPDMETIVKLANYFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|228987613|ref|ZP_04147727.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772073|gb|EEM20525.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 194 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] Length = 149 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + L +L+ Sbjct: 3 LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N R RKE LTQ+++ ++ + +S E S N+D ++ L+ L PL Sbjct: 1 MQFANVLRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDI 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|220931033|ref|YP_002507941.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] gi|219992343|gb|ACL68946.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] Length = 182 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R + ++ G ++S + ++E GK+ + + +A +L+ P Sbjct: 9 GKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNVP 62 >gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] Length = 107 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|190404425|ref|YP_001961056.1| rcorf81 [Agrobacterium rhizogenes] gi|158322221|gb|ABW33638.1| rcorf81 [Agrobacterium rhizogenes] Length = 62 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R IR +LTQ+E+ +RTG + + +E + + + + +A L L+ Sbjct: 4 NMRRIRHGKQLTQEEVAHRTGLSVRHVGAIERAEMSATVTVLGQIAEALGVEPAVLVT 61 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] Length = 219 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 5 KRDEPH--LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + +PH + + R++R+ ++T ++ TG + +S++E G ++ + Sbjct: 13 PKQDPHKITPNKERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSAS 72 Query: 63 IDNMIILAHTLDTPLWKLLK 82 + ++ LA L P+ K Sbjct: 73 LTTLVTLARALSVPITDFFK 92 >gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 272 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RKE LTQ+ + ++ G +S+ ETG++ ++ + L+ L+ + Sbjct: 2 RDMLAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMD 61 Query: 79 KLL 81 KL Sbjct: 62 KLF 64 >gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+++ + G ++ IS E S ++ ++ + + L +L+K Sbjct: 6 GHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQLIK 65 >gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 179 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R E +LTQ+E+ NR ++ +IS+LE ++ +I ++ + L T L + Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] Length = 158 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R++ +TQ+ + G ++ +S+ E G S + N+I LA + Sbjct: 92 RKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSDPSTSNLIALAKLFNMSPE 151 Query: 79 KLLK 82 +LL+ Sbjct: 152 ELLQ 155 >gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 179 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R E +LTQ+E+ NR ++ +IS+LE ++ +I ++ + L T L + Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 80 LL 81 Sbjct: 61 FF 62 >gi|225164391|ref|ZP_03726653.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] gi|224801001|gb|EEG19335.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] Length = 133 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 + R +R LTQ+E+ +GF ++ +LE+G K I ++ + LA +W+ L Sbjct: 24 ASRLRELRSIHGLTQQEVSELSGFHFTFYQQLESGRKKQIWLETIERLAAPYGLEVWQFL 83 Query: 82 KP 83 KP Sbjct: 84 KP 85 >gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus Mu50] gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+++ + G ++ IS E S ++ ++ + + L +L+K Sbjct: 6 GHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQLIK 65 >gi|300173352|ref|YP_003772518.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299887731|emb|CBL91699.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 184 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + +R E +T + T ++ + +ETGK++ +IDN+ ++ L P+ Sbjct: 6 VGENLKKVRIEKNMTLDNVAEMTDVSKPTLHNIETGKTSPSIDNLWKISSGLGIPI 61 >gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] Length = 476 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RM N + RK +Q++I G ++ +S+ E S+ + +N+I LA L Sbjct: 2 EVSRMSLGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLSSPSTENIIRLAEILRV 61 Query: 76 PLWKL 80 + +L Sbjct: 62 SVEEL 66 >gi|154707262|ref|YP_001424459.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111] gi|154356548|gb|ABS78010.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111] Length = 183 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+E +++ + + + G ++S I ++E+ + +D LA L L ++L Sbjct: 4 FAERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQPTLDVAGKLAVALGKTLSEML 63 >gi|33326774|gb|AAQ08805.1| BzdR [Azoarcus sp. CIB] Length = 298 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 38/63 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ + R++R + +T+K + ++G ++ ++++LETG I+I + +A L P+ Sbjct: 24 LMLGDRIRDLRAQRGMTRKMLAQQSGVSERYLAQLETGHGNISIILLRQIAQGLGFPIVD 83 Query: 80 LLK 82 L++ Sbjct: 84 LVR 86 >gi|72163432|ref|YP_291089.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71917164|gb|AAZ57066.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 225 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R R E L+Q+E+ R G A +I LE ++ + LA L Sbjct: 4 KDQRARGDLGRRVAYRRAELGLSQEEVAERAGMAAGYIDYLERNPPNLSPGALSRLADAL 63 Query: 74 DTPLWKLL 81 T LL Sbjct: 64 QTTPEALL 71 >gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] Length = 182 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +R +L+Q+ I ++ +S+ E G S + DN++ L+ + Sbjct: 1 MFIGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSVED 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|229086444|ref|ZP_04218617.1| hypothetical protein bcere0022_30290 [Bacillus cereus Rock3-44] gi|228696876|gb|EEL49688.1| hypothetical protein bcere0022_30290 [Bacillus cereus Rock3-44] Length = 185 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + IR++ KL+ +++ +G +++ I ++E G+S+ + + +A+ L Sbjct: 6 LILARNLKAIREKEKLSLEKVSQLSGVSKAMIGQIERGESSPTLTTIWKIANGLKVSFTS 65 Query: 80 LL 81 L+ Sbjct: 66 LI 67 >gi|269955944|ref|YP_003325733.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304625|gb|ACZ30175.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 266 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R+ A +TQ+E+ R G Q+ I+ +ETG+ ++ ++ LA L ++P Sbjct: 11 LRRVREGAAMTQRELAQRAGVDQATIAGIETGRRMPSLPTLVRLAEAAGRQLRVEIEP 68 >gi|84496251|ref|ZP_00995105.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] gi|84383019|gb|EAP98900.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp. HTCC2649] Length = 511 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ LTQ E+ ++ G +QS ++ +E G+ ++++ + + TL + L Sbjct: 14 IRDARRHQGLTQNELADKLGTSQSAVARIEQGRQNLSLEMLARVGETLGSEFVSL 68 >gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter marianensis DSM 12885] Length = 464 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RR R VN R R L+Q+E+ R G + +S +E G++ + Sbjct: 15 RRPRGAAGDPSGS------VVNGLRAARLRLGLSQQELAARAGVTRQAVSAIEGGQAAPS 68 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + LA L + L Sbjct: 69 LGVALRLARALGCRVEDLF 87 >gi|262204600|ref|YP_003275808.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262087947|gb|ACY23915.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 233 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + L+ ++ R G +++ +S++E +++ ++ + LA D L + Sbjct: 51 ARNVRRLRLQEGLSVGDMAARVGISKAMLSKIENAQTSCSLSTLARLATAFDVSPTSLFR 110 >gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] Length = 107 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A+ L TP+ Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|217978763|ref|YP_002362910.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504139|gb|ACK51548.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 217 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 PH+++ L E R RK +T E+ G + +S++E G+ + ++ + Sbjct: 23 SAPHVAERTLEE--AIGAQIRMHRKRLDITGGELAAAAGLSTGMLSKIENGQISPSLSTL 80 Query: 67 IILAHTLDTPLWKLLKP 83 LA L+ PL P Sbjct: 81 QSLARALNQPLSSFFTP 97 >gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax marinus SJ] Length = 189 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + TQK++ +G ++ ++ +E+G+ ++ N+I LA L+ + L+ Sbjct: 20 NIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGNPSLSNIIKLAKALNVSIDLLV 76 >gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 148 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R+E LTQ+++ R + +S ETG++T ID ++A LD P+ +LL+ Sbjct: 7 LPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITELLE 63 >gi|289449565|ref|YP_003474504.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184112|gb|ADC90537.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 210 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229011703|ref|ZP_04168886.1| hypothetical protein bmyco0001_21500 [Bacillus mycoides DSM 2048] gi|228749661|gb|EEL99503.1| hypothetical protein bmyco0001_21500 [Bacillus mycoides DSM 2048] Length = 204 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ N + IR++ KL+ +++ +G +++ I ++E G+S+ + + +A+ L Sbjct: 24 QITLAKNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83 Query: 79 KLL 81 L+ Sbjct: 84 SLI 86 >gi|170751194|ref|YP_001757454.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657716|gb|ACB26771.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 54.2 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P L ER + + R +R+E +L+ ++ G + +S++E G+ + ++ + Sbjct: 7 NAPTEDGKSL-ERAL-GHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATV 64 Query: 67 IILAHTLDTPLWKLL 81 +A L+ P+ L Sbjct: 65 NAVAKALNVPITTLF 79 >gi|291454777|ref|ZP_06594167.1| predicted protein [Streptomyces albus J1074] gi|291357726|gb|EFE84628.1| predicted protein [Streptomyces albus J1074] Length = 217 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R N R R + +E+ TG ++ +S++E ++ ++ + LA L T Sbjct: 40 AREALAQNVRRHRLARGWSLRELGAATGISKGLLSQIERAEANPTLEILTRLADVLATTC 99 Query: 78 WKLLK 82 LL+ Sbjct: 100 TDLLR 104 >gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074] gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074] gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074] Length = 200 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 11 LVRKRIRALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|224371939|ref|YP_002606105.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223694658|gb|ACN17941.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 84 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++IRK+ +TQ ++ + TG + +IS++E GK T +D + L L ++ + Sbjct: 17 GKAIKDIRKKKNMTQGDLADITGTSVKFISDVERGKETTQMDKVFDLVRALGIQIYLTID 76 Query: 83 P 83 P Sbjct: 77 P 77 >gi|192360886|ref|YP_001982699.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus Ueda107] gi|190687051|gb|ACE84729.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107] Length = 86 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R +L+Q+ + R ++++ E+E G + ++ + +A L+ P L+ Sbjct: 7 FGRVVKQLRDTNRLSQEALAERADLNRTYLGEVERGVAIPSLATISKIATALNLPTSDLI 66 >gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 209 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R+E ++Q E+ R G +QS I ET +++++ ++LA L+ Sbjct: 2 ETIGQRIKRFREELSISQAELAQRCGWLSQSRIGNYETDSRKVSVEDAVVLAKALNVNPG 61 Query: 79 KLL 81 +L+ Sbjct: 62 ELI 64 >gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 197 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R LT ++ NR G +++ IS +E G+++ + L L T L Sbjct: 15 EVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGTTLSA 74 Query: 80 LL 81 L Sbjct: 75 LF 76 >gi|325289343|ref|YP_004265524.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964744|gb|ADY55523.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 109 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK LTQ ++ TG + + IS +E S +I+ ++ + LD Sbjct: 6 KVLGERIAKRRKVLNLTQDDVAEATGLSNNHISNIENNHSIPSIETLLKICEVLDITPDY 65 Query: 80 LL 81 L Sbjct: 66 FL 67 >gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E K++Q+E+ + +QS++ + E+GK I + ++ LA+ + + LL Sbjct: 5 GIRLAQLRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLL 63 >gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 272 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 36/66 (54%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ + + RK L+Q+++ TG ++ +++ ETG+S ++D ++ ++ L Sbjct: 3 RKHLNIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVS 62 Query: 77 LWKLLK 82 L LL+ Sbjct: 63 LDFLLR 68 >gi|300855914|ref|YP_003780898.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436029|gb|ADK15796.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 119 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTP 76 I R IRK L+ K++ + + S++S++E G+S + +N+ ++A L+TP Sbjct: 3 IIGTKLRKIRKATGLSLKQLSTKINGKISISFLSDIENGRSNPSFENLKLIAAALETP 60 >gi|255262604|ref|ZP_05341946.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255104939|gb|EET47613.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 225 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R+ +DA R +RK T ++ + G A+S +S++E G+ + D Sbjct: 32 RENGENADATPVN---LGERVRELRKARSWTLEQAAQKAGLARSTLSKIENGQMSPTYDA 88 Query: 66 MIILAHTLDTPLWKLLKP 83 + LA L + +L P Sbjct: 89 LKKLAVGLAISVPQLFTP 106 >gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] Length = 107 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A+ L P+ Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] Length = 149 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] Length = 149 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] Length = 149 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] Length = 149 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] Length = 149 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] Length = 107 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|221271509|dbj|BAH15061.1| hypothetical protein [Vibrio parahaemolyticus] gi|328469183|gb|EGF40129.1| hypothetical protein VP10329_09881 [Vibrio parahaemolyticus 10329] Length = 68 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R++RK+ ++Q ++ +S++ +E G+ I ++ +A L + LL Sbjct: 8 FGYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDIRVLL 67 >gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|118172523|gb|ABK73419.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] Length = 189 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+E ++ ++ + + ++S E G + +++ ++ + L + L + Sbjct: 5 GARLRQFRRERGMSLTDVAAKAEVTKGFLSLAERGMTNVSVPVLMRICDALGIGIGDLFE 64 >gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 453 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R A +Q+++ G++ S IS LETGKS++++D + +A+ L P +L Sbjct: 12 GETIRLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIPPEQL 69 >gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 149 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 37/62 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F ++IRK+ ++Q+ + + G ++ +++ ETG +I+N+I +++ + + + Sbjct: 1 MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 198 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 14 LVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 73 Query: 81 LK 82 ++ Sbjct: 74 VE 75 >gi|294624392|ref|ZP_06703085.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601307|gb|EFF45351.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 105 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + ++Q I +R + S++S LE K + + +A L P+ L Sbjct: 3 VGQAIRLCRTQRGVSQSAIASRANCSVSYLSMLENNKRDPTLSTVTQIAEALRVPVGLLF 62 >gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] Length = 107 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|228929407|ref|ZP_04092428.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229198488|ref|ZP_04325192.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|228584991|gb|EEK43105.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|228830195|gb|EEM75811.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 194 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|225387206|ref|ZP_03756970.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme DSM 15981] gi|225046685|gb|EEG56931.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme DSM 15981] Length = 88 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R LTQKE+ RTG Q+ IS+LE G +++ + LA + L P Sbjct: 26 RALVEARISQNLTQKELAARTGIDQADISKLENGTRNPSLNLLKRLADGMGMVLRIEFVP 85 >gi|120610886|ref|YP_970564.1| XRE family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589350|gb|ABM32790.1| transcriptional regulator, XRE family [Acidovorax citrulli AAC00-1] Length = 285 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 36/71 (50%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + F ++ R+ R++ +L+Q+++ + +S +ETG++ + D ++ Sbjct: 12 PAHPSPVPGTHSPFGDHLRHWRRQRRLSQQDLALEAEVSTRHLSCVETGRAAPSRDMVLR 71 Query: 69 LAHTLDTPLWK 79 LA L PL + Sbjct: 72 LAERLAVPLRE 82 >gi|49078644|gb|AAT49805.1| PA1359 [synthetic construct] Length = 219 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M + L + R ++ N R +R +A L+Q+ + ++ + +E+G Sbjct: 22 MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 81 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 +++ + +A L L++ Sbjct: 82 VNVSLSTLDRIAAALGVLFPDLVQ 105 >gi|71734977|ref|YP_275099.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555530|gb|AAZ34741.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 191 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +L ++ G +Q +S++E + + ++DN+ L L P+ KL Sbjct: 7 LGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCDVLGMPMSKLF 66 >gi|89897035|ref|YP_520522.1| hypothetical protein DSY4289 [Desulfitobacterium hafniense Y51] gi|219667095|ref|YP_002457530.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336483|dbj|BAE86078.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537355|gb|ACL19094.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 181 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK LT ++ ++ + +IS +E + ++ + +A L PL Sbjct: 4 VGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPSLATLKRIAQALSVPLESFF 63 >gi|229141099|ref|ZP_04269641.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228642377|gb|EEK98666.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] Length = 194 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|300774480|ref|ZP_07084343.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506295|gb|EFK37430.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + IR+ L+QK + + IS E G++ I+ ++ +A + L +LL Sbjct: 4 FGTNIKKIRQVKGLSQKAFADLFDLNRGVISSYEEGRAEPKIETILKVASHFNLNLDQLL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|81428935|ref|YP_395935.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610577|emb|CAI55628.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 287 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R A +Q+ + ++ ++ IS+ ET KS +++ ++ LA + L + Sbjct: 1 MLIGQRLKQFRLGAGYSQRTLADKLNVSRQVISKWETDKSVPDLNLLVGLAQLYNVSLTE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|121603452|ref|YP_980781.1| helix-turn-helix domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120592421|gb|ABM35860.1| helix-turn-helix domain protein [Polaromonas naphthalenivorans CJ2] Length = 90 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R+ +Q+++ + +S++ E+E G + ++ + LA L L+ Sbjct: 9 FGIALRQSREARNWSQEQLAEHSNLNRSYVGEIERGSAIASLATVEKLALALGISPSALV 68 >gi|254465799|ref|ZP_05079210.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] gi|206686707|gb|EDZ47189.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] Length = 188 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL+ Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 >gi|167767673|ref|ZP_02439726.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|317499148|ref|ZP_07957425.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710690|gb|EDS21269.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|291560806|emb|CBL39606.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316893561|gb|EFV15766.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 120 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK+ +TQ+++ + S +S +ET ++++ + ++A L + + Sbjct: 7 KALGAKIKEYRKKENITQEQLAEMADISLSHMSNVETASVSVSLPALKLIADALGVTIDE 66 Query: 80 LL 81 LL Sbjct: 67 LL 68 >gi|86139426|ref|ZP_01057995.1| DNA binding protein, putative [Roseobacter sp. MED193] gi|85823929|gb|EAQ44135.1| DNA binding protein, putative [Roseobacter sp. MED193] Length = 188 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL+ Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72 >gi|325263068|ref|ZP_08129803.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5] gi|324031461|gb|EGB92741.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5] Length = 122 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+E LTQ+E+ ++TG + ++E G+ + D + L +L Sbjct: 9 LGQCLRDAREECGLTQQELADQTGRGLRHLQDIEKGRKNPSYDVLASFIKRLGISANELF 68 Query: 82 KP 83 P Sbjct: 69 YP 70 >gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 138 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK ++Q E+ + G ++ IS+ E +S +ID +I+L+ + LLK Sbjct: 6 RIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIPDIDKIIMLSDYFEVSTDYLLK 63 >gi|307727246|ref|YP_003910459.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587771|gb|ADN61168.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 215 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K P + + + R RK LT E+ R+G A S IS+ E G + D Sbjct: 8 KTRSPAREAPPALDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYD 67 Query: 65 NMIILAHTLDTPLWKLL 81 LAH+L+ + Sbjct: 68 KFAALAHSLELEFDAIF 84 >gi|283834409|ref|ZP_06354150.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220] gi|291069953|gb|EFE08062.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220] Length = 153 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R+IR+E +TQ EI + G + ++E GKST++++N++ +D K+ Sbjct: 8 ILAFHMRDIREEKGVTQAEIAEKLGMTSAGWGKVENGKSTLSVENLMKFCKLVDIDAQKI 67 Query: 81 LK 82 L Sbjct: 68 LT 69 >gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] Length = 259 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK++ L+Q+ + + G ++ + + E G S ++DN+ L + L L+ Sbjct: 5 FQQRLYELRKQSGLSQEGLADLLGVSRQAVQKWEAGTSRPDLDNLAALGRYFNVSLDYLV 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|313110592|ref|ZP_07796475.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882977|gb|EFQ41571.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 193 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 DE + ++ + +RKE +LT ++ R +++ IS +E +S+ + Sbjct: 2 DEKNPPGPLMDIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVL 61 Query: 67 IILAHTLDTPLWKLL 81 LA L L +LL Sbjct: 62 GRLASGLGIALSELL 76 >gi|116049312|ref|YP_791886.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584533|gb|ABJ10548.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 216 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 14 AILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 ER N R +R +A L+Q+ + ++ + +E+G +++ + + Sbjct: 33 PSPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 92 Query: 70 AHTLDTPLWKLLK 82 A L L++ Sbjct: 93 AAALGVLFPDLVQ 105 >gi|229145017|ref|ZP_04273412.1| hypothetical protein bcere0012_21770 [Bacillus cereus BDRD-ST24] gi|296502971|ref|YP_003664671.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|228638466|gb|EEK94901.1| hypothetical protein bcere0012_21770 [Bacillus cereus BDRD-ST24] gi|296324023|gb|ADH06951.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 185 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++I N + IR++ KL+ +++ TG +++ I ++E G S+ + + +A+ L Sbjct: 5 QLILAKNLKLIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64 Query: 79 KLL 81 L+ Sbjct: 65 SLI 67 >gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1] Length = 139 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R L++ E+ + R +R+E L+ ++ G +Q IS++E G + ++ Sbjct: 3 RTASNAPLAEERPLEKAL-GYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSL 61 Query: 64 DNMIILAHTLDTPLWKLLK 82 ++ +A L+ P+ L Sbjct: 62 ASINAIASALNVPITGLFT 80 >gi|15596556|ref|NP_250050.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9947301|gb|AAG04748.1|AE004565_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 218 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M + L + R ++ N R +R +A L+Q+ + ++ + +E+G Sbjct: 22 MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 81 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 +++ + +A L L++ Sbjct: 82 VNVSLSTLDRIAAALGVLFPDLVQ 105 >gi|24375356|ref|NP_719399.1| Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24350177|gb|AAN56843.1|AE015819_7 transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 75 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK L+Q E+ R +S+I +E + + +D + +A LD +LL Sbjct: 8 LGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEVNLTLDMLYKIAEELDCEPHELL 67 >gi|317488096|ref|ZP_07946673.1| hypothetical protein HMPREF1023_00371 [Eggerthella sp. 1_3_56FAA] gi|316912804|gb|EFV34336.1| hypothetical protein HMPREF1023_00371 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 37/65 (56%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+R++ + R R+ L+Q+++ G ++S I +E+G+ ++ +D++ +A LD Sbjct: 5 RKRVLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQ 64 Query: 77 LWKLL 81 + L Sbjct: 65 VRDLF 69 >gi|319791791|ref|YP_004153431.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594254|gb|ADU35320.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 206 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 P + L +R+ R++R L+ + G ++S IS +E G+S+ Sbjct: 9 ESTPAPATTSLNDRI--AQRVRDLRASRSLSLDALATHCGVSRSMISLIERGESSPTAVL 66 Query: 66 MIILAHTLDTPLWKLL 81 + LA L PL L Sbjct: 67 LEKLATGLGVPLASLF 82 >gi|260431708|ref|ZP_05785679.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] gi|260415536|gb|EEX08795.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] Length = 188 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + + N +G ++S +S++E G+S+ I + L L LL+ Sbjct: 15 RLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLLE 72 >gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] Length = 193 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R++ LT E+ R G A+S +S+LE G +++ + LA LD P+ +L Sbjct: 18 LLSASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRL 77 Query: 81 L 81 + Sbjct: 78 I 78 >gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 196 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ L Q ++ + ++ IS ETG++T +ID ++ +A P+ +LL Sbjct: 7 ENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPVDQLL 64 >gi|291326970|ref|ZP_06126519.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312079|gb|EFE52532.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 95 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++R+ ++ K++ G +Q S E G+ I++D + LA + Sbjct: 7 KSVGLKIRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIFNVSP 64 >gi|219667096|ref|YP_002457531.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537356|gb|ACL19095.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 179 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK KL+ K++ +T S +S++E ++ ++ + +A L P+ Sbjct: 4 LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 63 >gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 116 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 23 VNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R + + TQ+E+ R + S++S +E G+ +++ + LA+ L L +L Sbjct: 9 GQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVPHVETLAALANALGVSLGEL 68 Query: 81 LK 82 Sbjct: 69 FT 70 >gi|229155430|ref|ZP_04283539.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] gi|228627991|gb|EEK84709.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] Length = 157 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ + +Q+++ + G + + + E KS +IDN+I+L+ + L K Sbjct: 1 MSLGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDK 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|229163310|ref|ZP_04291262.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228620091|gb|EEK76965.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 194 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] Length = 156 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L + +M + RK+A +Q+++ R ++ I++ ET K +I N+I ++ Sbjct: 3 LPNNKEDSKMNLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGIPDIVNLIAIS 62 Query: 71 HTLDTPLWKLLK 82 L +L+K Sbjct: 63 DEFGLSLDELIK 74 >gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] Length = 107 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|24215545|ref|NP_713026.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45657075|ref|YP_001161.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196688|gb|AAN50044.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45600312|gb|AAS69798.1| transcriptional regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 98 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE IF N RK+A LTQ E+ NR G QS+IS++E+G+ +++ + L Sbjct: 8 REAKIFCKNLIAARKDAHLTQLEVANRLGEPQSYISKIESGERRLDVVEFWRIFKILGKS 67 Query: 77 L 77 L Sbjct: 68 L 68 >gi|325282344|ref|YP_004254885.1| helix-turn-helix domain-containing protein [Deinococcus proteolyticus MRP] gi|324314153|gb|ADY25268.1| helix-turn-helix domain protein [Deinococcus proteolyticus MRP] Length = 129 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E KL K++ + ++S+LE G++ ++D + LA + LL+ Sbjct: 5 ERLRELRSERKLRLKDVSEVAEISVPYLSDLERGRTNPSLDTLQTLAAAYSISVHDLLE 63 >gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor [Ferrimonas balearica DSM 9799] Length = 180 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +R +A L+Q+E+ RTG +IS++E + ++ ++ + L L Sbjct: 4 GNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSVSPSVASLKKILDGLPISL 58 >gi|306820407|ref|ZP_07454044.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551570|gb|EFM39524.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 69 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ NN + IRKE +Q ++ G +++ IS +ETG+ +IL LD + Sbjct: 5 LVLKNNLKEIRKEKGYSQTDLAELVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEE 64 Query: 80 LL 81 + Sbjct: 65 IF 66 >gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL F2-515] Length = 81 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R LTQ+E+ RT + +IS+LE S+ +I+ + + L + Sbjct: 4 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62 >gi|297560997|ref|YP_003679971.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845445|gb|ADH67465.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 187 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ L+ + +G ++ IS +E G++ + LA L L +L+ Sbjct: 9 LASTLRELRRARGLSGGALAELSGVSRGMISRIENGEAQPTASLLGRLAAALGITLSELI 68 >gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ T K + R G ++S +S++E K + ID +++LA LD L L Sbjct: 13 FGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERNKVSPAIDTLLMLADVLDINLEFLF 72 Query: 82 K 82 + Sbjct: 73 E 73 >gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 186 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R L+ E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 11 LVRQRLRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDEL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|281422929|ref|ZP_06253928.1| transcriptional regulator, PvuIIC [Prevotella copri DSM 18205] gi|281403021|gb|EFB33701.1| transcriptional regulator, PvuIIC [Prevotella copri DSM 18205] Length = 74 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R+ ++Q+++ G +++I LE + ++ ++ + L + L+ Sbjct: 13 FASRVKQRRESLDISQEKLAGIAGLHRTYIGSLERAEKIPSLITIVKITKALQINISDLI 72 >gi|169334830|ref|ZP_02862023.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis DSM 17244] gi|169257568|gb|EDS71534.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis DSM 17244] Length = 113 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ + R + KLTQ+++ + S +S +E G + ++ ++ +A+ L+ + K Sbjct: 6 LMMGERLKRQRIKQKLTQEQLAEAVDLSVSHLSHIENGNTKTSLQTVLNIANVLNISIDK 65 Query: 80 LL 81 +L Sbjct: 66 IL 67 >gi|260432343|ref|ZP_05786314.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416171|gb|EEX09430.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT ++ R + W+S++E S +I ++ +A L P+ L Sbjct: 20 LGADIRALRKSRGLTLTDVARRLDRSVGWLSQVERDLSEPSISDLRQIAECLGVPMSMLF 79 >gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 202 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E L+ E+ + G + +S++E G S++ + + LA LD L+ Sbjct: 19 VGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 78 >gi|229086928|ref|ZP_04219086.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228696371|gb|EEL49198.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] Length = 377 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR L+Q+++ G ++ IS +E+G+ + + LA L + L Sbjct: 9 NRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQYAPSARIALRLAKALGCQMEDLF 66 >gi|32456040|ref|NP_862207.1| regulatory protein [Enterobacter sp. RFL1396] gi|27464466|gb|AAO16093.1| regulatory protein [Enterobacter sp. RFL1396] Length = 79 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR E +TQ+++ ++ +++IS +E + I ++ ++ L+ Sbjct: 13 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 63 >gi|6458757|gb|AAF10602.1|AE001954_6 epoxidase, putative [Deinococcus radiodurans R1] Length = 161 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR++ +LT +++ +G +S++S LE +T ++ ++ + L +L Sbjct: 18 GARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCDALGIRPGELFD 77 Query: 83 P 83 P Sbjct: 78 P 78 >gi|294789197|ref|ZP_06754436.1| putative restriction-modification enzyme [Simonsiella muelleri ATCC 29453] gi|294482938|gb|EFG30626.1| putative restriction-modification enzyme [Simonsiella muelleri ATCC 29453] Length = 74 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I NN RN RK + Q E+ +S++ +E G+ + +D + ++ L Sbjct: 5 RQIIGNNIRNKRKILNIKQDELALLAEIDRSYMGRIERGEVNLTVDKLFQISLILKCEAA 64 Query: 79 KLL 81 +LL Sbjct: 65 ELL 67 >gi|241518443|ref|YP_002979071.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862856|gb|ACS60520.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 90 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R +R L+Q+ + +S++ +E G + + + A L + Sbjct: 4 RQTIGWNLRRLRVAKGLSQERLALEAEIDRSYVGRVERGMENVTVATLEAFARVLSVNVS 63 Query: 79 KLL 81 L Sbjct: 64 ALF 66 >gi|228902888|ref|ZP_04067030.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228954646|ref|ZP_04116669.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228967431|ref|ZP_04128462.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|229048068|ref|ZP_04193643.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229129642|ref|ZP_04258610.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|229192573|ref|ZP_04319534.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228590880|gb|EEK48738.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228653759|gb|EEL09629.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228723312|gb|EEL74682.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|228792267|gb|EEM39838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228804973|gb|EEM51569.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228856762|gb|EEN01280.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 182 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE L+Q+E+ R G S IS +E + ++ ++ + L L + Sbjct: 4 GENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVEFF 62 >gi|167033252|ref|YP_001668483.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859740|gb|ABY98147.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 197 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 LR + R+ L ++ G +Q +S++E + + ++D + L Sbjct: 6 QPRLRLEQYLGLQIKRQRQAQSLKLADVARIAGISQGMLSKIENAQVSTSLDTLSRLCDV 65 Query: 73 LDTPLWKLL 81 L P+ KL Sbjct: 66 LGMPMAKLF 74 >gi|187927014|ref|YP_001893359.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|241665343|ref|YP_002983702.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|187728768|gb|ACD29932.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|240867370|gb|ACS65030.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 198 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ KL+ E+ G ++S +S++E + + + LA L L L Sbjct: 17 VGAKLQALRQARKLSLDELSRHAGVSKSMLSQVERNLANPTVAVLWRLATALGVSLADFL 76 Query: 82 KP 83 P Sbjct: 77 SP 78 >gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM 4184] gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM 4184] Length = 516 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R+ L+ + G ++S + E+E K + +I+ + +A+ L P +L+ Sbjct: 5 LGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVPFGELV 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 253 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + + ++ + IR E K+TQ E+ + G + I ++E+GK +I Sbjct: 121 KALDVKPENLMAAASFVGYKIKKIRCERKITQAELAEKAGVSTGLIGQIESGKVEPSIKT 180 Query: 66 MIILAHTLDTPL 77 + +A L Sbjct: 181 LEKIAAALSLSP 192 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ +T +++ + G + S++SE+E GK +++ + LA L+ L+ Sbjct: 7 IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELGKKQPSLETIDKLAQALNISREGLI 62 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+E L+ E+ + G + S++ ++E+G++ + + +A LD L+ Sbjct: 73 GAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALSTLKSIAKALDVKPENLM 131 >gi|320532621|ref|ZP_08033419.1| putative restriction-modification system control element Bcll [Actinomyces sp. oral taxon 171 str. F0337] gi|320135151|gb|EFW27301.1| putative restriction-modification system control element Bcll [Actinomyces sp. oral taxon 171 str. F0337] Length = 61 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ L+Q+++ RT S+I ++E G+ +++ N++ +A LDT L+ Sbjct: 1 MRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIATALDTDAGGLV 56 >gi|284042761|ref|YP_003393101.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946982|gb|ADB49726.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 182 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R +R A +TQ+E+ R G ++++ LE G + + LA LD + L Sbjct: 2 GAMLRQLRTRAGITQRELAARDGLHRNYLGALERGTVANPGLATATRLARALDVSVSVL 60 >gi|255527984|ref|ZP_05394823.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186285|ref|ZP_06854689.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255508314|gb|EET84715.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049086|gb|EFG88516.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 184 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +I N NIR++ L+ ++ TG ++ ++++E G S + + +A L+ Sbjct: 6 LIIGKNLNNIRRQKGLSLDKVAELTGVSKGMLAQIEKGISNPTVTTLWKIATGLNVS 62 >gi|239932598|ref|ZP_04689551.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291440960|ref|ZP_06580350.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343855|gb|EFE70811.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R E T + R G ++ + ++E ++ +I ++ + L + Sbjct: 9 QSLARNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] Length = 277 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|291295432|ref|YP_003506830.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470391|gb|ADD27810.1| transcriptional regulator, XRE family [Meiothermus ruber DSM 1279] Length = 186 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + R R LT +++ R+G +S+IS LE + ++ +++ + Sbjct: 5 DPSPSVP----IGPRLRAARLAKGLTLEQVAQRSGLDKSFISRLERNATAASVASLLKVC 60 Query: 71 HTLDTPLWKLLKP 83 LD L P Sbjct: 61 AALDIQPGSLFDP 73 >gi|226526961|ref|YP_002790980.1| transcriptional regulator [Lactobacillus brevis] gi|226442553|dbj|BAH56423.1| transcriptional regulator [Lactobacillus brevis] Length = 65 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R RK+ L+Q E+ + G A+ +S LE ++ + +A+ LDT L L P Sbjct: 3 NKIREYRKKKNLSQAELAEKVGLARQTVSLLENKSYNPSLKVCLNIANVLDTTLDSLFNP 62 >gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 262 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 183 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IRK+ L+Q+E+ + G IS +E +++ ++ ++ L + + + Sbjct: 3 VGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRTSPSVASLKSLLDAIPISMAEFF 62 >gi|160944249|ref|ZP_02091478.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium prausnitzii M21/2] gi|313113217|ref|ZP_07798837.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] gi|158444431|gb|EDP21435.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium prausnitzii M21/2] gi|295103725|emb|CBL01269.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii SL3/3] gi|310624459|gb|EFQ07794.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] Length = 93 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA+ E + + RKE+ LTQK++ RTG AQ+ IS+LE G + ++ + LA Sbjct: 22 DALQPE-LTIAQAMIDARKESGLTQKQLSERTGIAQADISKLERGNANPSLRTLQRLAAG 80 Query: 73 LDT 75 + Sbjct: 81 MGM 83 >gi|158423697|ref|YP_001524989.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158330586|dbj|BAF88071.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 A +R F ++ R R L+ + + + G + +S++E G S+ ++ + Sbjct: 37 ASTEDEAASEHDRA-FGSSIREARLARGLSLQRVADAAGLSVGLLSQVERGISSPSVRVL 95 Query: 67 IILAHTLDTPLWKLL 81 + L + L Sbjct: 96 RAICGALGVTVQSLF 110 >gi|330825889|ref|YP_004389192.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311261|gb|AEB85676.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 81 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H +D +L R R+ ++Q+E+ +R+ + ++S +E G I ++ + Sbjct: 8 HANDPVLIA---LGGAIRRSRRARGISQEELAHRSVIDRFYMSSIERGGQNPGIVSIARI 64 Query: 70 AHTLDTPLWKLL 81 A ++ + +L+ Sbjct: 65 AKAMEMSMTELM 76 >gi|310827713|ref|YP_003960070.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308739447|gb|ADO37107.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 68 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N + IRKE KL+Q + G +++ IS +ETG+ +IL LD Sbjct: 3 EELILKNRLKEIRKEKKLSQSALAELVGVSRNTISSIETGQFNPTAKLALILCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|254500741|ref|ZP_05112892.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436812|gb|EEE43491.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 186 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L+ + + +G ++S +S++E G+S + ++ L L+ LL Sbjct: 12 ERLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLL 69 >gi|153208917|ref|ZP_01947136.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|165923365|ref|ZP_02219702.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 334] gi|212218472|ref|YP_002305259.1| transcriptional regulator [Coxiella burnetii CbuK_Q154] gi|120575638|gb|EAX32262.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916691|gb|EDR35295.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 334] gi|212012734|gb|ACJ20114.1| transcriptional regulator [Coxiella burnetii CbuK_Q154] Length = 183 Score = 54.2 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+E +++ + + + G ++S I ++E+ + +D LA L L ++L Sbjct: 4 FAERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQPTLDVAGKLAVALGKTLSEML 63 >gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] Length = 242 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ RK K+TQKE+ R G + IS E G + D + +A+ LD + Sbjct: 21 KYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDALFAIANALDVSIND 80 Query: 80 LL 81 L Sbjct: 81 LF 82 >gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] Length = 222 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R+ A L+Q + G +QS + E G N M +A + L Sbjct: 16 VFRIRLKELRENAGLSQYGFAEKIGISQSTVGNWEAGSREPNFKTMERIADFFGVSVDYL 75 Query: 81 L 81 L Sbjct: 76 L 76 >gi|313906487|ref|ZP_07839821.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468677|gb|EFR64045.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 101 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +R + ++TQKE+ + G Q+ IS LE G + I+++ +A L L Sbjct: 42 ELRHDNQMTQKELAVKCGITQANISNLENGTTRPTIESLKKIADALGMRLV 92 >gi|307269275|ref|ZP_07550628.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] gi|306514372|gb|EFM82934.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] Length = 91 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 4 RKRDEPHLSDA--ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +K++ + + +R+ +RKE +Q+E+ R G QS I+ +E G + Sbjct: 11 KKKNSSSFAKEFELESQRLEVAVALAQLRKELGFSQRELAERVGKPQSTIARIENGTVNV 70 Query: 62 NIDNMIILAHTLDTPL 77 + + +A + L Sbjct: 71 SFKVLYEIAQGVGKEL 86 >gi|163856318|ref|YP_001630616.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163260046|emb|CAP42347.1| predicted transcriptional regulator [Bordetella petrii] Length = 219 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ L+ ++ G + +S++E G S+ ++ + +LA + LL Sbjct: 32 LGQQLRQLRKQHGLSLMQVAKACGISVGLLSQVERGLSSPSVKIVTLLAGQFGVSVDSLL 91 Query: 82 K 82 + Sbjct: 92 R 92 >gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 376 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN ++IR ++Q+++ N G + IS +E+G+ ++ + LA L + L Sbjct: 9 NNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYAPSVAITLRLAKALGCQVENLF 66 >gi|134287468|ref|YP_001109635.1| putative phage repressor [Burkholderia vietnamiensis G4] gi|134131890|gb|ABO60584.1| putative phage repressor [Burkholderia vietnamiensis G4] Length = 235 Score = 53.8 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLW 78 R E ++QKE+ R G Q IS LE GKS + ++ LA L PLW Sbjct: 8 VGARVSARRTELGISQKELARRVGLTQPTISALEKGKSNTS-GSIASLAKALGVVPLW 64 >gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] Length = 191 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 33/65 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + R +R+ KLT E+ G ++ ++S++E G++T ++ +++ +A Sbjct: 6 DESMSASAAIGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRATPSLQSLVGIARA 65 Query: 73 LDTPL 77 L + Sbjct: 66 LGVSM 70 >gi|315453658|ref|YP_004073928.1| hypothetical protein HFELIS_12540 [Helicobacter felis ATCC 49179] gi|315132710|emb|CBY83338.1| putative uncharacterized protein [Helicobacter felis ATCC 49179] Length = 206 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPL 77 + + +R LTQ+E+ + G + I E+ KS I +D + LA+ L+T L Sbjct: 1 MLKEKLKQLRNANNLTQEELALKCGVSLQSIKRYESEQKSNITLDTLEKLANALNTDL 58 >gi|300119183|ref|ZP_07056880.1| MerR family transcriptional regulator [Bacillus cereus SJ1] gi|298723403|gb|EFI64148.1| MerR family transcriptional regulator [Bacillus cereus SJ1] Length = 181 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|182416543|ref|ZP_02947969.1| conserved domain protein [Clostridium butyricum 5521] gi|237668113|ref|ZP_04528097.1| DNA-biding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379615|gb|EDT77097.1| conserved domain protein [Clostridium butyricum 5521] gi|237656461|gb|EEP54017.1| DNA-biding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 84 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + ++ RKE LTQ+++ +QS+ISE+E G + ++ + ++ L Sbjct: 3 KKDYIIKLLEYRKENNLTQQQLSELINMSQSYISEIEQGIKSPSVKTLYDISSALKICPH 62 Query: 79 KLL 81 LL Sbjct: 63 VLL 65 >gi|111021488|ref|YP_704460.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821018|gb|ABG96302.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 187 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ R +A LT +++ +TG +Q ++S+ E G S ++ N+ +A L T LL+ Sbjct: 13 GTAIRSARHDAGLTLRDVAAKTGLSQPFLSQAENGHSVPSVMNLHRVAQVLGTTAHALLE 72 >gi|119716960|ref|YP_923925.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119537621|gb|ABL82238.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 104 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 P S+ R R R+ A T ++ G + ++SE+E G+ + + Sbjct: 10 PPQRPAASEPEPLWREAVGYELREERRTAGRTLADVAGAAGVSTQYLSEVERGRKEPSSE 69 Query: 65 NMIILAHTLDTPLWKL 80 + +A L L L Sbjct: 70 VLGAVAGALGLRLVDL 85 >gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 213 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R A ++Q+++ +G +S +ETG+S+ ++ ++ + L + + Sbjct: 27 VGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGVTMSEFF 86 Query: 82 KP 83 +P Sbjct: 87 EP 88 >gi|268608481|ref|ZP_06142208.1| hypothetical protein RflaF_03150 [Ruminococcus flavefaciens FD-1] gi|268610136|ref|ZP_06143863.1| hypothetical protein RflaF_11644 [Ruminococcus flavefaciens FD-1] gi|268611602|ref|ZP_06145329.1| hypothetical protein RflaF_19116 [Ruminococcus flavefaciens FD-1] Length = 117 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + N RKE L Q E+ ++S +ET +S +++ + + + L+ Sbjct: 7 VELDYKQVGLNIARRRKELHLKQVEVCELADLNDKYLSCIETARSIPSLEVFLRICNALN 66 Query: 75 TPLWKLL 81 T LL Sbjct: 67 TTPDHLL 73 >gi|258651682|ref|YP_003200838.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554907|gb|ACV77849.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 117 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R+ A ++Q+++ +G + S++S++E G+ + + + +A L P Sbjct: 9 EAFGAFVKAQRQLANISQRQLAKASGMSDSYLSQIERGQYKPSAEVLRGIAGALHIPPAV 68 Query: 80 LL 81 L Sbjct: 69 LF 70 >gi|188581450|ref|YP_001924895.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344948|gb|ACB80360.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 201 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ ER + R +R+E L+ ++ + G + IS++E G + ++ ++ +A Sbjct: 9 PVVEERPLEKALGHQVRVLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIA 68 Query: 71 HTLDTPLWKLL 81 L+ P+ L Sbjct: 69 SALNVPITALF 79 >gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + V N R +R+ + + R ++S +S+LE G I+ + LA+TL +L Sbjct: 7 VIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSEL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 104 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RK A LTQ E+ +TGF IS ETG T +++ + +LA L L Sbjct: 6 LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKL 61 >gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355] Length = 194 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK LT E+ R+G +Q+ IS++E G S+ + + LA+ ++ L KL Sbjct: 15 ARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANAMNITLSKLF 73 >gi|229157978|ref|ZP_04286049.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228625431|gb|EEK82187.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|168213144|ref|ZP_02638769.1| transcriptional regulator [Clostridium perfringens CPE str. F4969] gi|170715336|gb|EDT27518.1| transcriptional regulator [Clostridium perfringens CPE str. F4969] Length = 79 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+ +L+ E+ +TG ++S++SE+E G+ ++ + + TL+ L+ Sbjct: 7 NIKKYRELKELSLGELAKKTGLSKSYLSEIENGRKICSLKTLYKIGDTLNICPILLI 63 >gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842] gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842] Length = 107 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|148358351|ref|YP_001249558.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby] gi|148280124|gb|ABQ54212.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby] Length = 86 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RKE +Q++ ++ ++++ +E G+ + I +I +A L + L+ Sbjct: 17 GKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALILGVEVATLI 75 >gi|238924797|ref|YP_002938313.1| hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|238876472|gb|ACR76179.1| Hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|291526055|emb|CBK91642.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 108 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE ++ Q E+ + + + +S +E G+ ++D I + L+ LL Sbjct: 2 GNRIKIRRKELRIKQAELAEKLNISNNHMSSIENGRQKPSLDIFIRICDLLNVTPDYLL 60 >gi|168699329|ref|ZP_02731606.1| DNA-binding protein, putative [Gemmata obscuriglobus UQM 2246] Length = 89 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R F R +R + LTQ ++ R G +++LE G+ +I LA L Sbjct: 12 RTGFGKRLRELRIDKNLTQSQLGERAGMMYQDVAKLERGEREPMWATVIRLADALGV 68 >gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 104 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 26/63 (41%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 3 RSALGFALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDALMEFAQVLGVKPK 62 Query: 79 KLL 81 Sbjct: 63 DFF 65 >gi|29654276|ref|NP_819968.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 493] gi|161830755|ref|YP_001596754.1| DNA-binding protein [Coxiella burnetii RSA 331] gi|212212602|ref|YP_002303538.1| transcriptional regulator [Coxiella burnetii CbuG_Q212] gi|29541543|gb|AAO90482.1| transcriptional regulator [Coxiella burnetii RSA 493] gi|161762622|gb|ABX78264.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA 331] gi|212011012|gb|ACJ18393.1| transcriptional regulator [Coxiella burnetii CbuG_Q212] Length = 183 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+E +++ + + + G ++S I ++E+ + +D LA L L ++ Sbjct: 4 FAERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQPTLDVAGKLAVALGKTLSEMF 63 >gi|84685724|ref|ZP_01013621.1| probable transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666390|gb|EAQ12863.1| probable transcriptional regulator [Rhodobacterales bacterium HTCC2654] Length = 201 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++RK +T ++ G + W+S++E G++T ++ ++ LA L + Sbjct: 22 VGEDIRSLRKTRAMTLAQLAGAAGRSVGWLSQVERGRTTPSVRDLEQLADLLGVNISFFF 81 Query: 82 K 82 + Sbjct: 82 R 82 >gi|332298497|ref|YP_004440419.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181600|gb|AEE17288.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 115 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E+ ++Q+E+ + G + + +S +ETG + +++ + +A L LL Sbjct: 14 GRRIKKYRWESNISQEELADAVGVSTTHMSHIETGGTKLSLGVFVKIADALQISADLLL 72 >gi|303246008|ref|ZP_07332290.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492791|gb|EFL52659.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 87 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 31/53 (58%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKEA L Q E+ R G+ QS++S+ E+G+ I++ + + L L + + Sbjct: 29 LRKEAGLRQTELAARLGYPQSYVSKYESGQRRIDLIELEAICQALGITLLEFV 81 >gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis BCW-1] Length = 199 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ T ++ TG + S +S LE+G+ ++ ++ LA PL +L+ Sbjct: 13 VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQRKPTLELLLPLAKAYQVPLDELV 72 >gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 330 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +RK ++Q+E+ N+ G + IS E G + +++ ++ LA +T L Sbjct: 2 EHHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL 61 Query: 78 WKLL 81 L+ Sbjct: 62 DGLI 65 >gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] Length = 145 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +I+N+I+L+ + L + Sbjct: 1 MSLGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKSCPDIENLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|228477794|ref|ZP_04062422.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250486|gb|EEK09700.1| conserved domain protein [Streptococcus salivarius SK126] Length = 66 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R LTQ+ + + G ++ IS +E G I+ I + TLD L +L Sbjct: 5 KMKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61 >gi|183598237|ref|ZP_02959730.1| hypothetical protein PROSTU_01621 [Providencia stuartii ATCC 25827] gi|188020406|gb|EDU58446.1| hypothetical protein PROSTU_01621 [Providencia stuartii ATCC 25827] Length = 108 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + + R+E L+ EI + +Q IS E G + I++D + LD Sbjct: 19 KIVGASMKRARREKGLSGYEIAVKLNISQQQISRYERGINHISVDTLFNFILALDISYEI 78 Query: 80 LLK 82 L++ Sbjct: 79 LIQ 81 >gi|164688731|ref|ZP_02212759.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] gi|164602207|gb|EDQ95672.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] Length = 115 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R K+TQ+ + G ++ +S+ E G S + N++ LA Sbjct: 49 RKSLGEVLKENRIRCKMTQEFVSESIGVSRQAVSKWENGASDPSTSNLLALAKLYGISAE 108 Query: 79 KLLK 82 LLK Sbjct: 109 DLLK 112 >gi|323126263|gb|ADX23560.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 124 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + +L+Q + + ++ IS+ E G + ++DN++ L D L +L+ Sbjct: 4 VAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTIPDLDNLVRLTEIFDVSLDELV 63 >gi|307299363|ref|ZP_07579164.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915159|gb|EFN45545.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 183 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 36/60 (60%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R++R+ K++ K++ + +G + S IS++E GK + +++ + + + + + L++ Sbjct: 8 GNKLRSLRQARKISIKKLADTSGVSSSLISQIEHGKVSPSLNTLKKILNAMGETVISLVQ 67 >gi|262201416|ref|YP_003272624.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084763|gb|ACY20731.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 93 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +L E F R R+E L+Q+ G + + ++E G+ ++ ++N++ +A Sbjct: 15 KPVLVE---FGRRIRARREELGLSQEAAAVSIGIHWTQLGKVERGQRSVRVENIVKIAAG 71 Query: 73 LDTPLWKLL 81 L T LL Sbjct: 72 LSTTPGALL 80 >gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif, XRE-like) [Cupriavidus metallidurans CH34] Length = 101 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R ++Q ++ + + S++S LE K + M +AH L P Sbjct: 3 VGQAIKLCRTRRGISQADLARQAECSVSYLSMLENNKRDPTLSTMTKIAHALHMP 57 >gi|30264432|ref|NP_846809.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47529886|ref|YP_021235.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187254|ref|YP_030506.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49478619|ref|YP_038413.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141145|ref|YP_085685.1| transcriptional regulator [Bacillus cereus E33L] gi|65321730|ref|ZP_00394689.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|190566894|ref|ZP_03019810.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196034394|ref|ZP_03101803.1| DNA-binding protein [Bacillus cereus W] gi|196039275|ref|ZP_03106581.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196044751|ref|ZP_03111985.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218905557|ref|YP_002453391.1| DNA-binding protein [Bacillus cereus AH820] gi|225866344|ref|YP_002751722.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227817141|ref|YP_002817150.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228916995|ref|ZP_04080555.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935683|ref|ZP_04098496.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948076|ref|ZP_04110360.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093433|ref|ZP_04224536.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229123903|ref|ZP_04253095.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|229186602|ref|ZP_04313763.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|229602882|ref|YP_002868651.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254721950|ref|ZP_05183739.1| MerR family transcriptional regulator [Bacillus anthracis str. A1055] gi|254736465|ref|ZP_05194171.1| MerR family transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254750941|ref|ZP_05202980.1| MerR family transcriptional regulator [Bacillus anthracis str. Vollum] gi|254757730|ref|ZP_05209757.1| MerR family transcriptional regulator [Bacillus anthracis str. Australia 94] gi|301055871|ref|YP_003794082.1| XRE family transcriptional regulator [Bacillus anthracis CI] gi|30259090|gb|AAP28295.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505034|gb|AAT33710.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181181|gb|AAT56557.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330175|gb|AAT60821.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974614|gb|AAU16164.1| probable transcriptional regulator [Bacillus cereus E33L] gi|190561885|gb|EDV15854.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195992936|gb|EDX56895.1| DNA-binding protein [Bacillus cereus W] gi|196024239|gb|EDX62912.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029902|gb|EDX68503.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218537657|gb|ACK90055.1| DNA-binding protein [Bacillus cereus AH820] gi|225788250|gb|ACO28467.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227003894|gb|ACP13637.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228596861|gb|EEK54520.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|228659205|gb|EEL14853.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228689904|gb|EEL43708.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|228811434|gb|EEM57771.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823921|gb|EEM69740.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842602|gb|EEM87690.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267290|gb|ACQ48927.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378040|gb|ADK06944.1| transcriptional regulator, XRE family [Bacillus cereus biovar anthracis str. CI] gi|324328264|gb|ADY23524.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|257438000|ref|ZP_05613755.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] gi|257199660|gb|EEU97944.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] Length = 96 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R +TQ+E+ R G ++ +S +E G+ + +ID +I L+ L L Sbjct: 8 FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTDYL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|255523840|ref|ZP_05390804.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255512402|gb|EET88678.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 190 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R LT KE+ +T + ++S+LE G + + ID++ +A LD L Sbjct: 5 VGKKIKELRTNKNLTLKELSTKTNLSIGFLSQLERGLTAVAIDSLNNIAKALDVNL 60 >gi|291087268|ref|ZP_06571878.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075626|gb|EFE12990.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 96 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R +TQ+E+ R G ++ +S +E G+ + +ID +I L+ L L Sbjct: 8 FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTDYL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|163737159|ref|ZP_02144577.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|163740428|ref|ZP_02147822.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161386286|gb|EDQ10661.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161389763|gb|EDQ14114.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 184 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IR++A L+ + TG +++ + ++E G+S+ I + +A PL L+ Sbjct: 9 NLRDIRQDAGLSLSKAAEVTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALI 65 >gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016] gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 179 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F R +R+E ++ +++ R + IS++E + ++ + +A L+ + Sbjct: 3 FGLKIRKLRQEKSISIEQLAERAKLSTGLISQVERNITGPSVTTLWKIAKALNVSI 58 >gi|119899299|ref|YP_934512.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] gi|119671712|emb|CAL95625.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] Length = 200 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R +R + LT ++ G ++ +S++ETG + +D + +A + Sbjct: 7 KSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARS 66 Query: 73 LDTPLWKLL 81 L + L Sbjct: 67 LGVAMSALF 75 >gi|28871762|ref|NP_794381.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28855014|gb|AAO58076.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] Length = 94 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+IRK+ LTQ++ + +++++S LE G ID + LA L L+ Sbjct: 7 FGQVLRDIRKQRGLTQEDFSEVS--SRTYLSTLERGLKCPTIDKVTQLAEVLSVHPATLI 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|127512198|ref|YP_001093395.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637493|gb|ABO23136.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 127 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +IR+E + Q ++ R G +Q+ S LE GK+T +ID + ++A L +L Sbjct: 13 VMGAVVSSIRREKGIEQSDVAARMGLSQASYSRLEGGKATYSIDQVFLVAEALQVEPAEL 72 Query: 81 LK 82 + Sbjct: 73 FQ 74 >gi|42783489|ref|NP_980736.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47566547|ref|ZP_00237369.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|206976014|ref|ZP_03236924.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217961850|ref|YP_002340420.1| DNA-binding protein [Bacillus cereus AH187] gi|222097805|ref|YP_002531862.1| DNA-binding protein [Bacillus cereus Q1] gi|42739418|gb|AAS43344.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556577|gb|EAL14909.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|206745766|gb|EDZ57163.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066022|gb|ACJ80272.1| DNA-binding protein [Bacillus cereus AH187] gi|221241863|gb|ACM14573.1| DNA-binding protein [Bacillus cereus Q1] Length = 181 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK72] Length = 170 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|226951291|ref|ZP_03821755.1| Cro/CI family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226837964|gb|EEH70347.1| Cro/CI family transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 68 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RN R + +TQ+ + + G +S++ +E G+ ++ + +A L+ +L Sbjct: 7 VIGQLIRNRRTQRSITQEALALQCGIDRSYMGRIERGEVNFTVEKLYEIASALEINAKEL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|167924579|ref|ZP_02511670.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] Length = 81 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R E ++Q+ + N +S + ++E G+ + + N++ +A L LL Sbjct: 17 VGRSIRARRLELDISQEALANIADIDRSHMGKIERGERNVTLLNLVKIARALSCRPSDLL 76 >gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 330 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +RK ++Q+E+ N+ G + IS E G + +++ ++ LA +T L Sbjct: 2 EHHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL 61 Query: 78 WKLL 81 L+ Sbjct: 62 DGLM 65 >gi|318057395|ref|ZP_07976118.1| hypothetical protein SSA3_05613 [Streptomyces sp. SA3_actG] gi|318076536|ref|ZP_07983868.1| hypothetical protein SSA3_07397 [Streptomyces sp. SA3_actF] Length = 77 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 36/68 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L +R + R R EA +TQ+ + RTG + I E G + +D+++++A L Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTEGGTHSTLLDHLLLIARALG 69 Query: 75 TPLWKLLK 82 PL L++ Sbjct: 70 RPLADLVR 77 >gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] Length = 149 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ + +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] Length = 149 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ + +Q+++ + G + + + E KS +IDN+I+L+ + L + Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|229175036|ref|ZP_04302554.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228608404|gb|EEK65708.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + +R TQ++I +R G ++ + +E G ++I +D + +A LD Sbjct: 5 ELLGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDV 60 >gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135] Length = 120 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R RKE +TQKE+ R G +++I+ +E G++ + + + I +A L L Sbjct: 58 YGEILRERRKELGMTQKELAERVGRERTYINRIERGETDLQLSSFIRIAEALGIML 113 >gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IR+E L+Q+E+ + G IS +E K++ ++ ++ L + + + Sbjct: 4 GQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAEFF 62 >gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] Length = 195 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ +T E+ ++TG + S +S LE+G+ ++ ++ LA L L+ Sbjct: 12 VGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQRRPTLELLLPLARAHGVTLDHLV 71 >gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 114 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + LTQ+++ + + S++ ++E G ++++ ++ LA+ L + Sbjct: 4 KALGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERGDRVLSLETLVRLANELSISVDY 63 Query: 80 LLK 82 L++ Sbjct: 64 LIQ 66 >gi|239942360|ref|ZP_04694297.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239988825|ref|ZP_04709489.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 167 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + TG + ++S++E G + D + +A L L Sbjct: 9 LGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 >gi|228950623|ref|ZP_04112758.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067839|ref|ZP_04201157.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|229077365|ref|ZP_04210032.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|229176675|ref|ZP_04304080.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|229188360|ref|ZP_04315409.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228595159|gb|EEK52929.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228606842|gb|EEK64258.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|228705944|gb|EEL58263.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|228715323|gb|EEL67181.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|228809098|gb|EEM55582.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 82 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L+ + Sbjct: 17 EAEKWGRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 76 Query: 78 WKLL 81 +L+ Sbjct: 77 EELM 80 >gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] Length = 236 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ + G + +S ETG + ++D ++ L+ L ++L Sbjct: 7 GKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSNMPDLDILMELSDFYAVDLREIL 65 >gi|209886139|ref|YP_002289996.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209874335|gb|ACI94131.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 485 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 R +F FR +RK+ L+Q +I G + S+I+ +E + + ++ LA T Sbjct: 4 PTETGRKLFVGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAET 63 Query: 73 LDTPLWKL 80 D L L Sbjct: 64 YDLDLRDL 71 >gi|42779243|ref|NP_976490.1| hypothetical protein BCE_0162 [Bacillus cereus ATCC 10987] gi|42735158|gb|AAS39098.1| Unknown-related protein [Bacillus cereus ATCC 10987] Length = 64 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E +TQ E+ T ++ I +E G +++ I + TL L L Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEQGAYNPSLNLCIKICQTLGVTLNDLF 60 >gi|319783030|ref|YP_004142506.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168918|gb|ADV12456.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + + R +RK LT EI + G + W+S++E G ST ++ ++ A P Sbjct: 4 PDERVLAGDIRALRKARGLTLAEIGLKLGRSVGWVSQVERGLSTPSLGDLRAFAELFGVP 63 Query: 77 L 77 + Sbjct: 64 I 64 >gi|255283609|ref|ZP_05348164.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265871|gb|EET59076.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 111 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++AK+TQ+++ + G + +++ +E T ++ +I + + L +L Sbjct: 10 GRRIQKCREDAKMTQEQLAEKVGISWNYLGAIERETKTPKLETLIKIVNALGVSADDVL 68 >gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus] gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus] Length = 82 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I +NN ++ RKE +Q+E+ N+ + IS +E GK I I +A L L Sbjct: 10 EFIIMINNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDL 69 Query: 78 WKLL 81 KL Sbjct: 70 NKLF 73 >gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] Length = 179 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +++R E +LTQ+E+ NR ++ +IS+LE ++ +I +I + L T L + Sbjct: 4 GSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLREFF 62 >gi|89054537|ref|YP_509988.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864086|gb|ABD54963.1| transcriptional regulator, XRE family with cupin sensor [Jannaschia sp. CCS1] Length = 205 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK+ LT + + + G + ++S++E G++T ++ + +A L L Sbjct: 16 IRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVEL 67 >gi|260426928|ref|ZP_05780907.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] gi|260421420|gb|EEX14671.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] Length = 189 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R+ L+ + +G ++S +S++E G+S + + L L LL Sbjct: 16 RLKDARQAKGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLL 72 >gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 211 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + + + + LD +LL Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 >gi|149202477|ref|ZP_01879449.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143759|gb|EDM31793.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 215 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 2 PRRKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 P + + ER R RK+ +T E+ N T + +S++E Sbjct: 6 PAKLVKLTQDPHKLRDEREKVLEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIEN 65 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLK 82 G ++ ++ + LAH L PL K Sbjct: 66 GNTSPSLTTLQTLAHALSVPLTAFFK 91 >gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R++ LT + TG + +S++E G S ++ + +LA L Sbjct: 24 LGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSEPSVKALHLLASALGV 77 >gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] Length = 392 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK +Q+ + +R G ++ +I LE G+S ++ + LA L T + L Sbjct: 13 GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALFD 72 Query: 83 P 83 P Sbjct: 73 P 73 >gi|255282774|ref|ZP_05347329.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255266795|gb|EET60000.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 147 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E LTQ+E+ R + +S E G +T NI+ + ++ D + LL Sbjct: 7 LKKIRIENSLTQEEMAERLAVTRQAVSRWENGDATPNIETLKQISTAFDVSINTLL 62 >gi|24378683|ref|NP_720638.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290579667|ref|YP_003484059.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24376546|gb|AAN57944.1|AE014868_6 putative transcriptional regulator [Streptococcus mutans UA159] gi|254996566|dbj|BAH87167.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 64 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+ + + G ++ I+ +E G I+ I + LD L +L Sbjct: 5 RLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIKICKALDKSLDELF 61 >gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 209 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP + +D + ER+ R++R T + R G ++S IS +E G ++ Sbjct: 1 MPEYEDPPTADTDTGINERI--ARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAAS 58 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + LA L L L Sbjct: 59 PTAVVLDKLAAGLGVSLASLF 79 >gi|77408023|ref|ZP_00784772.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413855|ref|ZP_00790033.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160095|gb|EAO71228.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173385|gb|EAO76505.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 104 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R KL+QK+I + +Q ++ E+GK++ ++ + +A+ + + +L Sbjct: 1 MFSKKLKELRINNKLSQKQIAEQMNISQQAYAKWESGKNSPSLATLEKVANFFNLSIEEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|313113184|ref|ZP_07798810.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624523|gb|EFQ07852.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 270 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 8 EPHLSDAILRE--RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 H D + E + F + +R+E +TQKE+ + +S+ E G S +I Sbjct: 8 LAHKEDKTMYELNKTAFGSFLAQLRREKGMTQKELAACLYVSDKAVSKWERGLSVPDISL 67 Query: 66 MIILAHTLDTPLWKLL 81 ++ LA L+ + +LL Sbjct: 68 LVPLAEQLNVTVAELL 83 >gi|294630087|ref|ZP_06708647.1| PbsX family transcriptional regulator [Streptomyces sp. e14] gi|292833420|gb|EFF91769.1| PbsX family transcriptional regulator [Streptomyces sp. e14] Length = 230 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 19 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 77 >gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] Length = 121 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R++ L+Q E+ + I E G S D + LA LD LL Sbjct: 9 FAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVLDVTSDYLL 68 Query: 82 K 82 + Sbjct: 69 E 69 >gi|229032011|ref|ZP_04187995.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228729317|gb|EEL80310.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|229098833|ref|ZP_04229770.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229104994|ref|ZP_04235649.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229117859|ref|ZP_04247222.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228665591|gb|EEL21070.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228678422|gb|EEL32644.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228684581|gb|EEL38522.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 194 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] Length = 118 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK L+Q+E+ N G ++ IS+ E G+S + +++L+ + L KL+ Sbjct: 3 FNEKLIELRKAKGLSQEELGNELGVSRQTISKWELGQSYPDFQKLVLLSDFFNISLDKLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|167750339|ref|ZP_02422466.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702] gi|167656699|gb|EDS00829.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702] Length = 93 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA+ E + + RK +TQK + +TG AQ IS+LE G S ++ + LA Sbjct: 23 DALEPEYALI-RAIIDARKSKGITQKTLSEKTGIAQGDISKLENGNSNPSLRTLCRLAAG 81 Query: 73 LDTPLWKLLKP 83 +D L P Sbjct: 82 MDMKLKIEFVP 92 >gi|126736476|ref|ZP_01752217.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126714014|gb|EBA10884.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 214 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 37/78 (47%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R ++ + + + R +RK + T ++ + G A+S +S++E G+ + D Sbjct: 18 RIARESGESSVAQPLDLGARVRELRKASNWTLEQAAQQAGLARSTLSKIENGQMSPTYDA 77 Query: 66 MIILAHTLDTPLWKLLKP 83 + LA L+ + +L P Sbjct: 78 LKKLAIGLEISVPQLFTP 95 >gi|50085433|ref|YP_046943.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49531409|emb|CAG69121.1| conserved hypothetical protein; putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 182 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R++A L+ E+ R G A+S +S+LE + +++ + L L+ P K Sbjct: 6 EIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAK 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|323492244|ref|ZP_08097402.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG 20546] gi|323313557|gb|EGA66663.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG 20546] Length = 507 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 260 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R TQ+E+ + G +++ I E G + + M LA+ + + L Sbjct: 9 VIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSIDDL 68 Query: 81 LKP 83 P Sbjct: 69 FPP 71 >gi|256789090|ref|ZP_05527521.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 190 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + + R G ++ + ++E ++ ++ ++ + L + Sbjct: 9 QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|256114435|ref|ZP_05455150.1| hypothetical protein Bmelb3E_16432 [Brucella melitensis bv. 3 str. Ether] Length = 650 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 8 GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] Length = 149 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MMFSERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|225628403|ref|ZP_03786437.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237816216|ref|ZP_04595211.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|225616249|gb|EEH13297.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237788678|gb|EEP62891.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] Length = 652 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 10 GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 68 >gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] Length = 252 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE ++TQK++ ++ + +S+ E G S N+ +I +A L + +LL Sbjct: 9 FGQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELL 68 Query: 82 K 82 + Sbjct: 69 Q 69 >gi|161619771|ref|YP_001593658.1| hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163845428|ref|YP_001623083.1| hypothetical protein BSUIS_B1330 [Brucella suis ATCC 23445] gi|254703616|ref|ZP_05165444.1| hypothetical protein Bsuib36_06776 [Brucella suis bv. 3 str. 686] gi|260568922|ref|ZP_05839390.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|161336582|gb|ABX62887.1| Hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163676151|gb|ABY40261.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|260154306|gb|EEW89388.1| transcriptional regulator [Brucella suis bv. 4 str. 40] Length = 650 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 8 GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|218892536|ref|YP_002441405.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234475|ref|ZP_04927798.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719] gi|254239730|ref|ZP_04933052.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192] gi|126166406|gb|EAZ51917.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719] gi|126193108|gb|EAZ57171.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192] gi|218772764|emb|CAW28549.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 216 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M + L + R ++ N R +R +A L+Q+ + ++ + +E+G Sbjct: 22 MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 81 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 +++ + +A L L++ Sbjct: 82 VNVSLSTLDRIAAALGVLFPDLVQ 105 >gi|30260266|ref|NP_842643.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779154|ref|NP_976401.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525328|ref|YP_016677.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183109|ref|YP_026361.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479321|ref|YP_034428.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145140|ref|YP_081687.1| transcriptional regulator [Bacillus cereus E33L] gi|65317536|ref|ZP_00390495.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118475846|ref|YP_892997.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165872558|ref|ZP_02217190.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635071|ref|ZP_02393388.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641513|ref|ZP_02399761.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688934|ref|ZP_02880136.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707546|ref|ZP_02897999.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177655635|ref|ZP_02936998.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190569001|ref|ZP_03021902.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196036381|ref|ZP_03103778.1| DNA-binding protein [Bacillus cereus W] gi|196041773|ref|ZP_03109063.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047358|ref|ZP_03114571.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977949|ref|ZP_03238836.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217957651|ref|YP_002336193.1| DNA-binding protein [Bacillus cereus AH187] gi|218901277|ref|YP_002449111.1| DNA-binding protein [Bacillus cereus AH820] gi|222093845|ref|YP_002527894.1| transcriptional regulator [Bacillus cereus Q1] gi|225862128|ref|YP_002747506.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227812749|ref|YP_002812758.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228912814|ref|ZP_04076462.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925328|ref|ZP_04088425.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931577|ref|ZP_04094484.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943881|ref|ZP_04106267.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229015477|ref|ZP_04172476.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|229021686|ref|ZP_04178269.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|229089206|ref|ZP_04220488.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|229100872|ref|ZP_04231679.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|229119737|ref|ZP_04248999.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|229136921|ref|ZP_04265549.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|229159248|ref|ZP_04287273.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|229182469|ref|ZP_04309721.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|229194465|ref|ZP_04321269.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|229603974|ref|YP_002864727.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254682298|ref|ZP_05146159.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724216|ref|ZP_05186001.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735477|ref|ZP_05193185.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744621|ref|ZP_05202300.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756326|ref|ZP_05208355.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762382|ref|ZP_05214224.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|300119170|ref|ZP_07056871.1| DNA-binding protein [Bacillus cereus SJ1] gi|301051813|ref|YP_003790024.1| putative transcriptional regulator [Bacillus anthracis CI] gi|30253587|gb|AAP24129.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735069|gb|AAS39009.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47500476|gb|AAT29152.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177036|gb|AAT52412.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330877|gb|AAT61523.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978609|gb|AAU20159.1| probable transcriptional regulator [Bacillus cereus E33L] gi|118415071|gb|ABK83490.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164711686|gb|EDR17231.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510498|gb|EDR85896.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529545|gb|EDR92295.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127542|gb|EDS96416.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667158|gb|EDT17919.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080046|gb|EDT65145.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190559925|gb|EDV13909.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195991011|gb|EDX54982.1| DNA-binding protein [Bacillus cereus W] gi|196021760|gb|EDX60454.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027393|gb|EDX66010.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743855|gb|EDZ55275.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217064728|gb|ACJ78978.1| DNA-binding protein [Bacillus cereus AH187] gi|218537235|gb|ACK89633.1| DNA-binding protein [Bacillus cereus AH820] gi|221237892|gb|ACM10602.1| probable transcriptional regulator [Bacillus cereus Q1] gi|225785876|gb|ACO26093.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005378|gb|ACP15121.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228589055|gb|EEK47069.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|228601049|gb|EEK58617.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|228624263|gb|EEK81064.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|228646586|gb|EEL02792.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|228663762|gb|EEL19340.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|228682550|gb|EEL36620.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|228694169|gb|EEL47850.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|228739622|gb|EEL90035.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|228745820|gb|EEL95823.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|228815838|gb|EEM62073.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828129|gb|EEM73856.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834375|gb|EEM79915.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846874|gb|EEM91878.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268382|gb|ACQ50019.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|298723492|gb|EFI64233.1| DNA-binding protein [Bacillus cereus SJ1] gi|300373982|gb|ADK02886.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324324065|gb|ADY19325.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 DELM 65 >gi|291537380|emb|CBL10492.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 110 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R KLTQ+ + R + +I E+E G ++++ +I L+ L+ LL Sbjct: 6 LGVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNVSTDYLL 65 >gi|265751235|ref|ZP_06087298.1| predicted protein [Bacteroides sp. 3_1_33FAA] gi|270294600|ref|ZP_06200802.1| predicted protein [Bacteroides sp. D20] gi|263238131|gb|EEZ23581.1| predicted protein [Bacteroides sp. 3_1_33FAA] gi|270276067|gb|EFA21927.1| predicted protein [Bacteroides sp. D20] Length = 66 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R K++Q+ + N ++++ ++E GK +++ +A L+ L Sbjct: 5 EVFGKKVLERRLSLKISQETLANMADIDRTYLPDIEKGKRNVSLRVADKIAKALNVSLKD 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|228955944|ref|ZP_04117880.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803724|gb|EEM50407.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 59 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++Q+E+ +G +++IS LE GK I+ + LA L +L+K Sbjct: 1 MSQEELAFNSGLDRTYISLLERGKRKPTINTLFALARALKVNPSQLIK 48 >gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 182 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE L+Q+E+ R G S IS +E + ++ ++ + L L Sbjct: 4 GENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 62 >gi|116249226|ref|YP_765067.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253876|emb|CAK12271.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 90 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R +R L+Q+ + +S++ +E G + + + A L + Sbjct: 4 RQTIGWNLRRLRVAKGLSQERLALEAEIDRSYVGRVERGMENVTVATLEAFARVLSVNVS 63 Query: 79 KLL 81 L Sbjct: 64 ALF 66 >gi|320530460|ref|ZP_08031518.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas artemidis F0399] gi|320137293|gb|EFW29217.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas artemidis F0399] Length = 93 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +++ ER I + R A LTQKE+ ++G AQS IS+LE G + ++ + LA Sbjct: 22 ESLQPERAII-EAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLAAG 80 Query: 73 LDTPLWKLLKP 83 + L P Sbjct: 81 MGMRLHLEFLP 91 >gi|295133913|ref|YP_003584589.1| hypothetical protein ZPR_2068 [Zunongwangia profunda SM-A87] gi|294981928|gb|ADF52393.1| membrane protein [Zunongwangia profunda SM-A87] Length = 214 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E N +N R +Q+ + +G + I +E N D++ +A L + Sbjct: 2 ENQNLSNRIKNFRILKGFSQEALAEHSGLSVRTIQRMENNDRIPNADSLKKVAEALGISI 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM 10507] Length = 217 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IRK K+ Q+E+ + G +S++E G + + + + + L + Sbjct: 4 QLLGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVNYPTFETLEKIINVLGVTPNE 63 Query: 80 LLK 82 LL Sbjct: 64 LLT 66 >gi|197261594|ref|YP_002154411.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|197092466|gb|ACH42341.1| helix-turn-helix domain protein [Bacillus phage IEBH] Length = 79 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 M F + R+IRK+ +TQ+++ + F+ S IS +E GK ++ + + LA+ L + Sbjct: 1 MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSID 60 Query: 79 KLL 81 +L Sbjct: 61 ELF 63 >gi|170781903|ref|YP_001710235.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156471|emb|CAQ01619.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 487 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ R+ RK A LT + + R G S +S +E G+ + + +A LD + Sbjct: 14 DQLVIGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALDVDV 73 Query: 78 WKLL 81 LL Sbjct: 74 THLL 77 >gi|153010591|ref|YP_001371805.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562479|gb|ABS15976.1| putative transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 91 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R IR ++Q ++ +G +++ LE G + + LA L+ + Sbjct: 5 ELLAINLRRIRVARGISQDDLALISGVERAYTGRLERGAMNPTVKTLAKLATALECSVAD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 302 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +++RKE L+Q+ + + ++ +S+ E+G +D +I+++ + L+ Sbjct: 3 FGMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDYLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|228906769|ref|ZP_04070639.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] gi|228852885|gb|EEM97669.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] Length = 149 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ D + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|218288753|ref|ZP_03493016.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241111|gb|EED08287.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 82 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R RK L+ +E+ R G + S+I +E+G N + ++A L L L Sbjct: 4 LAQRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDL 62 >gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] Length = 342 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN +N RKE KLTQ ++ R ++S IS E G +I +I LA+ ++ + L Sbjct: 5 VFANNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSIDNL 64 Query: 81 L 81 Sbjct: 65 F 65 >gi|164686153|ref|ZP_02210183.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] gi|164601755|gb|EDQ95220.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] Length = 183 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R L+ E TG +++ + ++E G+S+ I + ++ L LL Sbjct: 8 VGQNLRRLRNSLGLSLDEASKLTGVSKAMLGQIERGESSPTISTLWKISSGLKVNFTSLL 67 >gi|167031535|ref|YP_001666766.1| helix-turn-helix domain-containing protein [Pseudomonas putida GB-1] gi|166858023|gb|ABY96430.1| helix-turn-helix domain protein [Pseudomonas putida GB-1] Length = 91 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + +R LTQ++ + + +++++S LE G + +D + +A+ ++ Sbjct: 4 KQAFGQALKQLRMSQGLTQEDFSDVS--SRTYLSTLERGLKSPTLDKLDEIAYVMEVHPV 61 Query: 79 KLL 81 +L Sbjct: 62 SIL 64 >gi|118619637|ref|YP_907969.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571747|gb|ABL06498.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 138 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP ++ +S + I + R R+ A ++ +++ R+G + ++S++E G Sbjct: 1 MPGEEKLGAKVSAVSSKASDI-GSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK 59 Query: 61 INIDNMIILAHTLDTPLWKL 80 + D + +A L L Sbjct: 60 PSADVLAQIAKALRVSAEVL 79 >gi|309792582|ref|ZP_07687044.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] gi|308225396|gb|EFO79162.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] Length = 206 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Query: 6 RDEPH---LSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 RD ++ + R +R+ +L+ + + +G A + +S +E GK++ Sbjct: 12 RDLHVPEARDCPSPQDGKVDVGARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSP 71 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 ++ + +A L P+ +P Sbjct: 72 SVSTLQQVAVALGVPITSFFEP 93 >gi|307301170|ref|ZP_07580932.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307321071|ref|ZP_07600476.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306893243|gb|EFN24024.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903626|gb|EFN34213.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 192 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + +AI R +R LT ++ R+G +++ IS +E G+++ + L Sbjct: 1 MENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKLC 60 Query: 71 HTLDTPLWKLL 81 L T L L Sbjct: 61 SALGTTLSALF 71 >gi|295697327|ref|YP_003590565.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412929|gb|ADG07421.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 181 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E T +E+ + + IS++E G+ + + L+ P+ Sbjct: 7 KLRRVRQEKGWTIQELAEKCEVSPGLISQVERGRVVPTLTTFWRICQALEVPM 59 >gi|222148474|ref|YP_002549431.1| hypothetical protein Avi_1998 [Agrobacterium vitis S4] gi|221735462|gb|ACM36425.1| Conserved hypothetical protein [Agrobacterium vitis S4] Length = 119 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 26/51 (50%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R K+T +E+ + G + ++SE+E+GK + M +A L L L Sbjct: 68 RMFRKMTARELAEQAGISAPYVSEIESGKKDGSFATMKKIAEALRVDLDDL 118 >gi|218896089|ref|YP_002444500.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228964096|ref|ZP_04125221.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544124|gb|ACK96518.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228795583|gb|EEM43065.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] Length = 149 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ D + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|218779200|ref|YP_002430518.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760584|gb|ACL03050.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 196 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + + + N RK ++Q+ + + +G ++S I+ +ETGK ++ ++ +A Sbjct: 5 DEVLQQTKYALAKNVAVGRKAHNMSQQALADASGVSKSTIAAIETGKGEPSLSTIVAIAC 64 Query: 72 TLDTPLWKLL 81 TL L Sbjct: 65 TLQCSPQMLF 74 >gi|62290714|ref|YP_222507.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|189024928|ref|YP_001935696.1| Cro/CI family transcriptional regulator [Brucella abortus S19] gi|225853293|ref|YP_002733526.1| hypothetical protein BMEA_A1902 [Brucella melitensis ATCC 23457] gi|254690004|ref|ZP_05153258.1| hypothetical protein Babob68_07506 [Brucella abortus bv. 6 str. 870] gi|254694495|ref|ZP_05156323.1| hypothetical protein Babob3T_07514 [Brucella abortus bv. 3 str. Tulya] gi|254698155|ref|ZP_05159983.1| hypothetical protein Babob28_10710 [Brucella abortus bv. 2 str. 86/8/59] gi|254700494|ref|ZP_05162322.1| hypothetical protein Bsuib55_06531 [Brucella suis bv. 5 str. 513] gi|254708298|ref|ZP_05170126.1| hypothetical protein BpinM_15413 [Brucella pinnipedialis M163/99/10] gi|254708850|ref|ZP_05170661.1| hypothetical protein BpinB_01038 [Brucella pinnipedialis B2/94] gi|254714691|ref|ZP_05176502.1| hypothetical protein BcetM6_15404 [Brucella ceti M644/93/1] gi|254717589|ref|ZP_05179400.1| hypothetical protein BcetM_14533 [Brucella ceti M13/05/1] gi|254731038|ref|ZP_05189616.1| hypothetical protein Babob42_07546 [Brucella abortus bv. 4 str. 292] gi|256030376|ref|ZP_05443990.1| hypothetical protein BpinM2_06958 [Brucella pinnipedialis M292/94/1] gi|256045452|ref|ZP_05448343.1| hypothetical protein Bmelb1R_13219 [Brucella melitensis bv. 1 str. Rev.1] gi|256061874|ref|ZP_05452007.1| hypothetical protein Bneo5_16155 [Brucella neotomae 5K33] gi|256160551|ref|ZP_05458237.1| hypothetical protein BcetM4_16231 [Brucella ceti M490/95/1] gi|256255754|ref|ZP_05461290.1| hypothetical protein BcetB_16060 [Brucella ceti B1/94] gi|256258259|ref|ZP_05463795.1| hypothetical protein Babob9C_13113 [Brucella abortus bv. 9 str. C68] gi|256263214|ref|ZP_05465746.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|260547047|ref|ZP_05822785.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260755540|ref|ZP_05867888.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758763|ref|ZP_05871111.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260762597|ref|ZP_05874934.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214811|ref|ZP_05929092.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261757497|ref|ZP_06001206.1| transcriptional regulator [Brucella sp. F5/99] gi|297249109|ref|ZP_06932817.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] gi|62196846|gb|AAX75146.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|189020500|gb|ACD73222.1| transcriptional regulator, Cro/CI family [Brucella abortus S19] gi|225641658|gb|ACO01572.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260095412|gb|EEW79290.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260669081|gb|EEX56021.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673023|gb|EEX59844.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675648|gb|EEX62469.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260916418|gb|EEX83279.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261737481|gb|EEY25477.1| transcriptional regulator [Brucella sp. F5/99] gi|263093166|gb|EEZ17272.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|297174242|gb|EFH33599.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] Length = 650 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 8 GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|319792387|ref|YP_004154027.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594850|gb|ADU35916.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 236 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + +P L +R F + R RK T ++ R+G + + IS E G+ + Sbjct: 8 KPGTKPKDEAPTL-DRTTFGHRLRTARKRFGWTLAQLAERSGVSITTISRAERGQLALGY 66 Query: 64 DNMIILAHTLDTPLWKLL 81 +N L L+ + + Sbjct: 67 ENFAALGRALEMDMNAMF 84 >gi|257437962|ref|ZP_05613717.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199622|gb|EEU97906.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 94 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R LTQKE+ RTG Q+ IS+LE G ++ + LA + L + P Sbjct: 25 RAMADARISQNLTQKELAERTGINQADISKLENGTRNPSLKLLKRLADGMGMDLKLVFTP 84 >gi|163731757|ref|ZP_02139204.1| transcriptional regulator HTH-3 family, putative [Roseobacter litoralis Och 149] gi|161395211|gb|EDQ19533.1| transcriptional regulator HTH-3 family, putative [Roseobacter litoralis Och 149] Length = 207 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ + G A+S +S++E G+ + D + LA L+ + +L Sbjct: 27 LGVRVRELRKARAWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|16973422|gb|AAL32284.1|AF118548_4 hypothetical protein [Brucella abortus] Length = 650 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 8 GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66 >gi|75764621|ref|ZP_00744064.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899709|ref|ZP_04063958.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] gi|74487893|gb|EAO51666.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859941|gb|EEN04352.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] Length = 149 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ D + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2] gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2] Length = 120 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RKE L+Q E+ +R GF++ ++ E G + + +I +A + L Sbjct: 1 MLGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYL 60 Query: 81 LK 82 L+ Sbjct: 61 LR 62 >gi|257439609|ref|ZP_05615364.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197976|gb|EEU96260.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 212 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RKE+ LTQ+++ RTG AQ+ IS+LE G ++ + LA + Sbjct: 155 AARKESGLTQQQLSERTGIAQTDISKLERGNGNPSLRTLQRLAAGMGM 202 >gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 194 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +T + TG A S +S LE+G+ ++ ++ LA + PL +L+ Sbjct: 12 VGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQRRPGLELLLPLAKAYNVPLDELV 71 >gi|206969826|ref|ZP_03230780.1| DNA-binding protein [Bacillus cereus AH1134] gi|218233772|ref|YP_002369171.1| DNA-binding protein [Bacillus cereus B4264] gi|218899530|ref|YP_002447941.1| DNA-binding protein [Bacillus cereus G9842] gi|228923113|ref|ZP_04086404.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941529|ref|ZP_04104079.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960632|ref|ZP_04122278.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974459|ref|ZP_04135027.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981053|ref|ZP_04141355.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229071869|ref|ZP_04205081.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229081626|ref|ZP_04214121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229111834|ref|ZP_04241380.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229146932|ref|ZP_04275296.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229152564|ref|ZP_04280754.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|229180637|ref|ZP_04307977.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296504853|ref|YP_003666553.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|206735514|gb|EDZ52682.1| DNA-binding protein [Bacillus cereus AH1134] gi|218161729|gb|ACK61721.1| DNA-binding protein [Bacillus cereus B4264] gi|218543442|gb|ACK95836.1| DNA-binding protein [Bacillus cereus G9842] gi|228602782|gb|EEK60263.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228630930|gb|EEK87569.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228636531|gb|EEK92997.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228671590|gb|EEL26888.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228701630|gb|EEL54121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228711241|gb|EEL63204.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228778713|gb|EEM26978.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228785295|gb|EEM33306.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799060|gb|EEM46031.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818179|gb|EEM64254.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836492|gb|EEM81842.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325905|gb|ADH08833.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326942143|gb|AEA18039.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|30022437|ref|NP_834068.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29897995|gb|AAP11269.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] Length = 181 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|332666712|ref|YP_004449500.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335526|gb|AEE52627.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 174 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 ++ + D + RK+A LTQ+E+ ++G ++ +IS LE K+ I + Sbjct: 101 QNSTYDPDKNPE----IGLMIKQARKDAGLTQEELAQKSGTSKHYISRLENNKADIELLT 156 Query: 66 MIILAHT 72 + + Sbjct: 157 LKKIIEA 163 >gi|328947407|ref|YP_004364744.1| hypothetical protein Tresu_0498 [Treponema succinifaciens DSM 2489] gi|328447731|gb|AEB13447.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 195 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ LT K + ++S +S++E K + ID ++ +A LD L L Sbjct: 12 FGEKLRAVRERKHLTLKAVAAHAKVSESLVSQIERNKVSPAIDTLLDIADALDISLEFLF 71 Query: 82 K 82 + Sbjct: 72 E 72 >gi|298292634|ref|YP_003694573.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929145|gb|ADH89954.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 123 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 14 AILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 A + +R++ N R R+ L+ + + G A++++S++ETG + + +A Sbjct: 55 AAIVDRLVAGENAIRVWREHRGLSASSLAEKAGIARAFLSQIETGNRDGTVATLKKIADA 114 Query: 73 LDTPLWKLL 81 L + L+ Sbjct: 115 LLVTVDDLI 123 >gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 189 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ E+ R G A+S +S+LETG +++ + LA LD P+ +L+ Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVSRLI 74 >gi|170756833|ref|YP_001780378.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169122045|gb|ACA45881.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 140 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F F+NIRKE L+Q+++ + + + IS +E+G+ + + + +A L +L Sbjct: 3 FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYVEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 192 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R T ++ TG ++S +S LE+G+ +++ ++ +A PL +L+ Sbjct: 9 VGERLRALRASRGATLADLAEVTGISKSTLSRLESGQRRPSLELLLPIARAHRVPLDELV 68 >gi|229039980|ref|ZP_04189744.1| Transcriptional regulator Xre [Bacillus cereus AH676] gi|228727388|gb|EEL78581.1| Transcriptional regulator Xre [Bacillus cereus AH676] Length = 82 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L+ + Sbjct: 17 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 76 Query: 78 WKLL 81 +L+ Sbjct: 77 EELM 80 >gi|229542977|ref|ZP_04432037.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229327397|gb|EEN93072.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 139 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF + +R +Q E+ R G + IS ETG S +I + ++ L + Sbjct: 13 KAIFAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSID 72 Query: 79 KLL 81 LL Sbjct: 73 YLL 75 >gi|126699832|ref|YP_001088729.1| putative regulatory protein [Clostridium difficile 630] gi|254975815|ref|ZP_05272287.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255101355|ref|ZP_05330332.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307231|ref|ZP_05351402.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314944|ref|ZP_05356527.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517618|ref|ZP_05385294.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650729|ref|ZP_05397631.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|260683815|ref|YP_003215100.1| putative regulatory protein [Clostridium difficile CD196] gi|260687475|ref|YP_003218609.1| putative regulatory protein [Clostridium difficile R20291] gi|306520644|ref|ZP_07406991.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251269|emb|CAJ69100.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209978|emb|CBA63987.1| putative regulatory protein [Clostridium difficile CD196] gi|260213492|emb|CBE05196.1| putative regulatory protein [Clostridium difficile R20291] Length = 105 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK+A LT KE N G + +I+++E+GK ++ I + L+ L+K Sbjct: 5 GKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVLIK 64 >gi|295107230|emb|CBL04773.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 69 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +R+E L Q+ +G +S+++ +E G+ + I + +A + Sbjct: 4 RKALGLRIKELREERDLPQRAFAEASGLDRSYLAAIENGQINVGIKTVERIAAGFGISVE 63 Query: 79 KLLK 82 +L K Sbjct: 64 QLFK 67 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++R L+ ++ +TG QS IS+LE G I+ D + +A +D P+ + Sbjct: 5 EKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDIFFQ 63 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK A +TQ+E+ R G ++ IS+ ETG ++ + +A L P+ +LL Sbjct: 5 QIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELL 61 >gi|146299117|ref|YP_001193708.1| helix-turn-helix domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153535|gb|ABQ04389.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101] Length = 76 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R++ L+Q+ + + +S I+ LE K I ++ +A+ LD +LL Sbjct: 12 LGVHVRQLREKKGLSQQGLADDCNINKSQIARLEVAKVNTGIKTLVKIANALDIEPKELL 71 >gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct] Length = 200 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 5 KRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R P + R E R +RK LT E+ ++ +IS+LE + +I Sbjct: 2 PRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSI 61 Query: 64 DNMIILAHTLDT 75 + +A +L Sbjct: 62 PALFNIARSLGV 73 >gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 113 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK+A LTQ E+ + G QS ++ E GK +N+I LA L+ + Sbjct: 1 MAFAERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSVDY 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|260588066|ref|ZP_05853979.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260541593|gb|EEX22162.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 107 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE +TQKE+ +TG Q+ IS +E G ++D + LA + L Sbjct: 43 RAMVAARKERNMTQKELAEKTGITQADISRIENGTRNPSLDMIKRLAKGMGMRL 96 >gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W] gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W] Length = 107 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|220924825|ref|YP_002500127.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949432|gb|ACL59824.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 218 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ E+ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 36 LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 95 >gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Query: 3 RRKRDEPHLSDAILRERM----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +R E LS E+M I + N+RK+ +Q+E+ + G + IS+ E + Sbjct: 28 KRTESEKQLSGKRKDEKMEEVMILADKIINLRKKNGWSQEELAEKLGVTRQSISKYEGAQ 87 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 S ++D ++ L+ L+K Sbjct: 88 SIPDLDKILKLSEIFGVTTDYLIK 111 >gi|134098034|ref|YP_001103695.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007202|ref|ZP_06565175.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910657|emb|CAM00770.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 488 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++F R++R+ A LT E+ R G A S +S LE G + + LA L + + + Sbjct: 19 LVFGQRLRHLRRAAGLTLVELGERVGRAPSQLSLLENGHREPKLSLLRSLADALGSSVDE 78 Query: 80 LL 81 L+ Sbjct: 79 LM 80 >gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 193 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I R +RK LT K++ TG + ++S+LE + ++ + +++ L Sbjct: 12 IIGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAADPSVRALNVISTALGV 66 >gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 104 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 26/63 (41%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 3 RSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETNTYTPSIDAIMAFAQVLGVKPK 62 Query: 79 KLL 81 Sbjct: 63 DFF 65 >gi|150391108|ref|YP_001321157.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950970|gb|ABR49498.1| putative transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 89 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R L+QKE+ + G QS IS LE G+ +I+ + +AH L + Sbjct: 35 QLRLAQGLSQKELAEKVGTKQSAISRLEGGEYNPSIEFLSKVAHALGKEI 84 >gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5] gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5] Length = 189 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IRK L+ + TG +++ + ++E G S I + + L Sbjct: 2 EPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGI 61 Query: 76 PLWKLLK 82 L++ Sbjct: 62 SFTTLIE 68 >gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 192 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL--- 77 + + +R E K T K + +TG + ++S+ E G ++I ID++ +A L+ L Sbjct: 6 VIGFRIKELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVELSSF 65 Query: 78 WKLLKP 83 + L P Sbjct: 66 FDLSSP 71 >gi|266624214|ref|ZP_06117149.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288863957|gb|EFC96255.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 94 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +R + +TQ ++ + G +S IS ETG + D +I +A LL Sbjct: 4 FGNTLKTLRLQENMTQAQLSQKLGLTKSVISAYETGLRLPSYDVLIHIAQIFKVSTDYLL 63 >gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] Length = 149 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|255093201|ref|ZP_05322679.1| putative regulatory protein [Clostridium difficile CIP 107932] Length = 103 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK+A LT KE N G + +I+++E+GK ++ I + L+ L+K Sbjct: 5 GKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVLIK 64 >gi|224538182|ref|ZP_03678721.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] gi|224520204|gb|EEF89309.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] Length = 70 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+++ +++I +E GK I+I + +A+ L+ + Sbjct: 17 QRRKELGITQEDLAYSANVDRTYIGYIENGKQNISISILCKIANVLNLNMKDFF 70 >gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 189 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IRK L+ + TG +++ + ++E G S I + + L Sbjct: 2 EPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGI 61 Query: 76 PLWKLLK 82 L++ Sbjct: 62 SFTTLIE 68 >gi|170782465|ref|YP_001710798.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157034|emb|CAQ02207.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 107 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + R R+ ++Q+ + +G + + ++E G+ ++ N+I +A LD Sbjct: 12 FGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDV 65 >gi|148272464|ref|YP_001222025.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830394|emb|CAN01329.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 107 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + R R+ ++Q+ + +G + + ++E G+ ++ N+I +A LD Sbjct: 12 FGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDV 65 >gi|42541081|gb|AAS19438.1| C.SnaBI control protein [Sphaerotilus natans] Length = 79 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R + L+Q+E+ + G ++++S++E G + + ++ L+ L+ Sbjct: 9 AQALVKYRHLSHLSQEELADAAGIHRTYVSQIERGLKMPTVAILFKISKALNIRASDLI 67 >gi|307566125|ref|ZP_07628583.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella amnii CRIS 21A-A] gi|307345313|gb|EFN90692.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella amnii CRIS 21A-A] Length = 101 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 RDE + + R E LTQ+E+ R G ++ IS LE G S I+I Sbjct: 17 RDEHERNVTDAVHAFQIGEIIKKARIEQNLTQEELGERIGVKRAQISRLEKGYS-ISIPT 75 Query: 66 MIILAHTLDTPLWKL 80 M + L L Sbjct: 76 MSRVFKALGVSTASL 90 >gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 197 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T ++ TG ++S +S LE+G+ ++ ++ LA T D PL L+ Sbjct: 8 VGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDVPLDDLV 67 >gi|268610105|ref|ZP_06143832.1| putative regulatory protein [Ruminococcus flavefaciens FD-1] gi|325679993|ref|ZP_08159562.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108431|gb|EGC02678.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 126 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +R K+ Q + + + S++S +E G+ T +++ +I +A LDT + Sbjct: 6 KLIGKRIKEVRTARKMPQMLLAEKCDISDSYLSYIECGRKTPSLEVIIRIARELDTTVDS 65 Query: 80 LLK 82 LL+ Sbjct: 66 LLE 68 >gi|257416855|ref|ZP_05593849.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257158683|gb|EEU88643.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 239 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ + R E LTQ E+ + + IS E KS NID +I L++ + L +LLK Sbjct: 4 GNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 63 >gi|302524705|ref|ZP_07277047.1| PopR protein [Streptomyces sp. AA4] gi|302433600|gb|EFL05416.1| PopR protein [Streptomyces sp. AA4] Length = 115 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 33/78 (42%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++R +A R + + R+ R+ ++ R G + ++SE+E G+ + Sbjct: 9 QRRAPARDDEAEPLWREVLGRSLRSARENQGERLVDVAERAGISPQYLSEIERGRKEPSS 68 Query: 64 DNMIILAHTLDTPLWKLL 81 + + + L L LL Sbjct: 69 EMIAAVTGALGVNLTGLL 86 >gi|255971922|ref|ZP_05422508.1| predicted protein [Enterococcus faecalis T1] gi|256616820|ref|ZP_05473666.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256763304|ref|ZP_05503884.1| predicted protein [Enterococcus faecalis T3] gi|256957906|ref|ZP_05562077.1| predicted protein [Enterococcus faecalis DS5] gi|257079843|ref|ZP_05574204.1| predicted protein [Enterococcus faecalis JH1] gi|257087648|ref|ZP_05582009.1| predicted protein [Enterococcus faecalis D6] gi|294779495|ref|ZP_06744891.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300860620|ref|ZP_07106707.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|255962940|gb|EET95416.1| predicted protein [Enterococcus faecalis T1] gi|256596347|gb|EEU15523.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256684555|gb|EEU24250.1| predicted protein [Enterococcus faecalis T3] gi|256948402|gb|EEU65034.1| predicted protein [Enterococcus faecalis DS5] gi|256987873|gb|EEU75175.1| predicted protein [Enterococcus faecalis JH1] gi|256995678|gb|EEU82980.1| predicted protein [Enterococcus faecalis D6] gi|294453452|gb|EFG21858.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300849659|gb|EFK77409.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323481602|gb|ADX81041.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 239 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ + R E LTQ E+ + + IS E KS NID +I L++ + L +LLK Sbjct: 4 GNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 63 >gi|190572107|ref|YP_001969952.1| putative DNA-binding protein [Stenotrophomonas maltophilia K279a] gi|190010029|emb|CAQ43635.1| putative DNA-binding protein [Stenotrophomonas maltophilia K279a] Length = 74 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R + ++Q+ + +++ S++E G+ + + + +A + T + LL+ Sbjct: 14 IRAHRIDLGVSQEAFADHIQMHRAYYSKIERGEKNLTLATLERVAKGMGTSMSALLR 70 >gi|145593254|ref|YP_001157551.1| XRE family transcriptional regulator [Salinispora tropica CNB-440] gi|145302591|gb|ABP53173.1| transcriptional regulator, XRE family [Salinispora tropica CNB-440] Length = 228 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R T +E+ G + ++SE+E G+ + + + + L L Sbjct: 35 RRVIGGVLRRLRVRQGRTLREVAAAAGVSMPYLSEVERGRKEASSEVLAAICRALGIRLS 94 Query: 79 KLL 81 LL Sbjct: 95 DLL 97 >gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 179 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LTQ+E+ R ++ +IS+LE ++ +I +I + +L T + Sbjct: 4 GEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLIDILESLGTNIKDFF 62 >gi|322804725|emb|CBZ02277.1| transcriptional repressor [Clostridium botulinum H04402 065] Length = 63 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ + G + I +E GK +++ I + L+ L L Sbjct: 4 KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKALNKTLNDLF 61 >gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK +Q+++ + G + IS+ E+ + +I+N+I L+ + Sbjct: 1 MSISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|86142246|ref|ZP_01060756.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] gi|85830998|gb|EAQ49455.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] Length = 251 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R IR L+Q+ + + E G+S I+ +I +A+ P+ LL Sbjct: 4 FGKNIRKIRSVKTLSQQAFAELFDLKRGTLGAYEEGRSEPKIETIIKIANYFSIPIDDLL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 210 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +RK+ +TQ E+ G ++ IS++E G S N+ +A +L Sbjct: 9 FGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTSYPTFANLDKIARYFKATPNELF 68 >gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 158 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N + +RK LTQ E G +++ +S E G S+++ + + + + L Sbjct: 1 MIGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTSSVSTELLDRICQKFNVSYIDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|229028494|ref|ZP_04184614.1| Transcriptional regulator [Bacillus cereus AH1271] gi|228732807|gb|EEL83669.1| Transcriptional regulator [Bacillus cereus AH1271] Length = 66 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R + LTQ+++ + G + IS +E GK ++D + + + +D L L Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYVVDKTLNDLF 61 >gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] Length = 180 Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ RTG S IS +E+G ++ + + + L + Sbjct: 3 LGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMNPSVGTLKRILDGIPVTLGEFF 62 >gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 198 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 H + + R+ K+TQKE G ++ I + E+G+ + ID + Sbjct: 4 SHSIKITMSSPEEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQ 63 Query: 69 LAHTLDTPLWKLLKP 83 +A+ L+ P +LL P Sbjct: 64 IANELNVPWQELLSP 78 >gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 475 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 15 ILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + +R +F + +R++ LTQ + G + S+++ +E + ++ ++ LA Sbjct: 3 VTADRKLFLGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQRPVSAQLLLRLADAY 62 Query: 74 DTPLWKL 80 D L L Sbjct: 63 DVDLRTL 69 >gi|262282100|ref|ZP_06059869.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] gi|262262554|gb|EEY81251.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] Length = 70 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 20 MIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 MI N + R E +TQ ++ + G + I +E GK ++ I + L+ L Sbjct: 5 MIMAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCIAICKCLNKTL 64 Query: 78 WKLL 81 +L Sbjct: 65 DQLF 68 >gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 322 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + N+RK+ +Q+E R G ++ IS+ E G+ST +++ ++ ++ Sbjct: 1 MILADKITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDV 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|257439204|ref|ZP_05614959.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198337|gb|EEU96621.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 95 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R AKL+Q+++ + G + + +LE G S ++ +I +A + LL Sbjct: 9 GNRIFTLRTNAKLSQEKLAEKLGVSHHHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67 >gi|229078339|ref|ZP_04210903.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] gi|228705014|gb|EEL57436.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] Length = 149 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSEHLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|164687455|ref|ZP_02211483.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM 16795] gi|164603229|gb|EDQ96694.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM 16795] Length = 69 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N + +RKE KL+Q E+ G +++ +S +ETG+ ++L LD Sbjct: 3 EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTVSSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens] Length = 265 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+Q+++ + G ++ +S+ E+G+S +++ +IIL+ + + L+ Sbjct: 3 LAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13] gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 268 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+Q+++ + G ++ +S+ E+G+S +++ +IIL+ + + L+ Sbjct: 3 LAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] Length = 195 Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R IRKE +TQ+E+ + G Q++I++LE+GK + + L Sbjct: 16 IRKIRKELGITQEELARKAGVTQAYIAKLESGKVDPRLSTFNRILQAL 63 >gi|315647016|ref|ZP_07900129.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315277218|gb|EFU40547.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 181 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN R + KLT KE+ + S++SE+E K+ +I + +A+ L+ L Sbjct: 5 GEVIRNTRIKQKLTLKEVAKAGSISLSFLSEIERDKANPSISVLKRIANALNVNFTDLF 63 >gi|312870364|ref|ZP_07730489.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094065|gb|EFQ52384.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 214 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R TQ+E+ + G ++ IS E G+S +I ++ L+ L LL Sbjct: 3 FAEKIKQYRAHNDWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYHVSLDDLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|325110382|ref|YP_004271450.1| hypothetical protein Plabr_3845 [Planctomyces brasiliensis DSM 5305] gi|324970650|gb|ADY61428.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 74 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ +Q+ ++ + +E G+ + + N+ +A TL L +L+ Sbjct: 12 FAQRVRALRRGKGDSQESFAYACELNRTDMGGIERGERNVALRNIERIAATLGISLSELM 71 >gi|256394949|ref|YP_003116513.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361175|gb|ACU74672.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 193 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R T + +R + S +S +ETG+ I +D ++ +A L T L +L Sbjct: 10 LVRRRIRTLRLARGWTLDSLASRCDLSPSNLSRIETGQRRIALDQLVPIARALGTTLDQL 69 Query: 81 LKP 83 ++P Sbjct: 70 VEP 72 >gi|229074136|ref|ZP_04207183.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] gi|228709030|gb|EEL61156.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 EELM 65 >gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri DSM 555] Length = 268 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IR + LTQKE+ + I E + ++D + +A L Sbjct: 4 GENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENNRRKPSVDTLDKIAKVLGV 56 >gi|328949058|ref|YP_004366395.1| hypothetical protein Tresu_2229 [Treponema succinifaciens DSM 2489] gi|328449382|gb|AEB15098.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 109 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R F+ N + RK+ + Q ++ G + ++I+ +E GK + + + +A +L Sbjct: 4 QTLRQQFIQNLKFFRKQKGMRQLDLALEIGKSSNYINSIENGKYFPSPETIESIARSLGI 63 Query: 76 PLWKLL 81 +L Sbjct: 64 EPVRLF 69 >gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|288959078|ref|YP_003449419.1| transcriptional regulator [Azospirillum sp. B510] gi|288911386|dbj|BAI72875.1| transcriptional regulator [Azospirillum sp. B510] Length = 222 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A L+Q+++ + G +Q I++LETG+ + +D + LA L LL Sbjct: 8 MRELRQAAGLSQEKLADLAGTSQPQINKLETGQRKMTVDWAVKLAGPLGIEPAVLL 63 >gi|269793184|ref|YP_003318088.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100819|gb|ACZ19806.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 124 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R +AK+ Q E+ R G +Q+++S +ETGK + + + A L L +L Sbjct: 4 GERIRRARLKAKMEQGELARRIGISQAFLSRIETGKRGCSSEILERAARALGVGLEELCS 63 Query: 83 P 83 P Sbjct: 64 P 64 >gi|261414485|ref|YP_003248168.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370941|gb|ACX73686.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327908|gb|ADL27109.1| putative transcriptional regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 78 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F N + R + L+Q+E+ +++I +E + I+ + I L LD + +L Sbjct: 13 FGNLVHDARVKKGLSQEELGFELDLHRTYIGMIERAERNISFFHAIKLIQYLDINIKEL 71 >gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676] gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603] gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185] gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] Length = 272 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621] gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3] gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3] Length = 277 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293] gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|182414108|ref|YP_001819174.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177841322|gb|ACB75574.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 96 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLW 78 I N + +R++ +LTQ+++ R G + +E G + + + LA L P W Sbjct: 14 EILRKNLKRLREKQRLTQQDLAERAGIDYKYAQRIEAGHWPGLQLKTIEKLAEALGVPAW 73 Query: 79 KLLKP 83 +LLKP Sbjct: 74 RLLKP 78 >gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842] gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1] gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC 10987] gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 262 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] Length = 121 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + +RK KL+QKE + G I + E+G S +I+ +I ++ + Sbjct: 1 MIFSQKIQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTSYPSINELIKISDVFNITTDS 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|270291339|ref|ZP_06197561.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304385092|ref|ZP_07367438.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|270280185|gb|EFA26021.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304329286|gb|EFL96506.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 66 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q E+ N G + I +E G + + + LD L L Sbjct: 4 QRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDLF 61 >gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L T + + Sbjct: 2 NKIAELRKEKLISQEKLAAKVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59 >gi|283795173|ref|ZP_06344326.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] gi|291076818|gb|EFE14182.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] Length = 123 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK LTQ+E+ +R+G I +E G + + + L +L L Sbjct: 9 LGQCVRDARKRCGLTQQELADRSGMGLRHIQNIEYGLVNPSYECLDALVKSLGISANLLF 68 Query: 82 KP 83 P Sbjct: 69 HP 70 >gi|237809224|ref|YP_002893664.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237501485|gb|ACQ94078.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 97 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R E + Q+++ G A+S + ++E G+ + ++ +A L +L+ Sbjct: 25 FGKAVRATRLEQGVGQEKLAGLAGVARSHMGKIERGEHMPTLALILKIAAALGISAAELM 84 >gi|146300783|ref|YP_001195374.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155201|gb|ABQ06055.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 82 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 7/72 (9%) Query: 17 RERMIFVNNFRNIRKE-------AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 +ER+ ++R + ++Q+E+ RTG+A++ I ++E G++ I+ + + Sbjct: 8 KERIKLGKRIMHLRNQCINKDNGKPISQEELGLRTGYAKNHIGKIERGQTNPKIETLFSI 67 Query: 70 AHTLDTPLWKLL 81 A L+ + +L Sbjct: 68 AMELNVDIRELF 79 >gi|39937189|ref|NP_949465.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651047|emb|CAE29570.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] Length = 116 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF ++ R L Q E+ + G + +S E+G + DN+ LA LD L Sbjct: 9 IFQQRLKDARTLRGLNQAELAGKAGLPAASVSHFESGPRKPSFDNLKALASALDVTTDYL 68 Query: 81 L 81 L Sbjct: 69 L 69 >gi|88797514|ref|ZP_01113103.1| hypothetical protein MED297_10191 [Reinekea sp. MED297] gi|88779686|gb|EAR10872.1| hypothetical protein MED297_10191 [Reinekea sp. MED297] Length = 507 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK+ LT +++ R + S++S +E GK T ++D Sbjct: 4 SKSLIRQSHFLGTKIRNLRKQNNLTMEDLSARCIRVDPDSAPSVSYLSMIERGKRTPSLD 63 Query: 65 NMIILAHTLDT 75 + ++A Sbjct: 64 MLEVIAAVFQK 74 >gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa PACS2] gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 199 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 5 KRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R P + R E R +RK LT E+ ++ +IS+LE + +I Sbjct: 2 PRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSI 61 Query: 64 DNMIILAHTLDT 75 + +A +L Sbjct: 62 PALFNIARSLGV 73 >gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51] gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51] Length = 276 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R+ LTQ E+ R G AQ+ ISE+E G S + +++ +A Sbjct: 6 RLKHARRLKGLTQTELAERAGIAQASISEIERGLSRSS-SHLVKIAQICGV 55 >gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 199 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ +T + TG + S +S LE+G +++ ++ +A + PL L+ Sbjct: 18 VGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 77 >gi|124010375|ref|ZP_01695021.1| transcriptional regulator [Microscilla marina ATCC 23134] gi|123983542|gb|EAY24007.1| transcriptional regulator [Microscilla marina ATCC 23134] Length = 121 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R+ KL+QKE+ QS S++E GK+ + + L+ + +L Sbjct: 4 GDKIRKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNVEVAELFT 63 >gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 106 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK +LTQ E+ R G ++ +S E G S +++ ++ + LDT LL Sbjct: 6 FGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYLL 65 >gi|158316684|ref|YP_001509192.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112089|gb|ABW14286.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 260 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R + P R + R +R+ T +++ + ++SE+E G+ + Sbjct: 21 RPESAGPPAEPVAPPLRRLIGGVLRRLRQAQGRTLRDVAEAAQVSMPYLSEVERGRKEAS 80 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + + L+ L LL Sbjct: 81 SEVLAAICRALNIRLVDLL 99 >gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] Length = 135 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R IRK+ ++Q ++ TG S +SE E G D + +A L+ L Sbjct: 2 NRIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSL 55 >gi|269961337|ref|ZP_06175702.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833888|gb|EEZ87982.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 518 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKEPAWFL 80 >gi|254511223|ref|ZP_05123290.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534934|gb|EEE37922.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 208 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T + ++ G A+S +S++E G+ + D + LA L+ + +L Sbjct: 27 LGARVRELRKARNWTLEHAASQAGLARSTLSKIENGQMSPTFDALKKLATGLEISVPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|170758899|ref|YP_001786628.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405888|gb|ACA54299.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 177 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK+ LT KE+ T + +IS LE ++ ++ N+ + L L + Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 80 LLK 82 +LK Sbjct: 61 ILK 63 >gi|168183094|ref|ZP_02617758.1| DNA-binding protein [Clostridium botulinum Bf] gi|182673878|gb|EDT85839.1| DNA-binding protein [Clostridium botulinum Bf] Length = 177 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK+ LT KE+ T + +IS LE ++ ++ N+ + L L + Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 80 LLK 82 +LK Sbjct: 61 ILK 63 >gi|148379223|ref|YP_001253764.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934065|ref|YP_001383597.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937268|ref|YP_001387146.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|153941321|ref|YP_001390589.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168178665|ref|ZP_02613329.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170754457|ref|YP_001780864.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|226948506|ref|YP_002803597.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|237794524|ref|YP_002862076.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148288707|emb|CAL82789.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152930109|gb|ABS35609.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933182|gb|ABS38681.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|152937217|gb|ABS42715.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|169119669|gb|ACA43505.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|182671253|gb|EDT83227.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226842469|gb|ACO85135.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|229263464|gb|ACQ54497.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|295318667|gb|ADF99044.1| DNA-binding protein [Clostridium botulinum F str. 230613] gi|322805558|emb|CBZ03123.1| transcriptional regulator, MerR family, near polyamine transporter [Clostridium botulinum H04402 065] Length = 177 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK+ LT KE+ T + +IS LE ++ ++ N+ + L L + Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 80 LLK 82 +LK Sbjct: 61 ILK 63 >gi|86157299|ref|YP_464084.1| transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773810|gb|ABC80647.1| transcriptional regulator, XRE family with cupin sensor domain protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 192 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + L+ +++ +G +++ + ++E G+S I+ + ++ L P L Sbjct: 11 VVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSAL 70 Query: 81 LK 82 + Sbjct: 71 IT 72 >gi|283782136|ref|YP_003372891.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440589|gb|ADB19031.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 202 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R++RK T +++ + +G ++S +SE+E G + + +A Sbjct: 12 EPLQQLVCDRVRSMRKAKGWTLEQLASLSGVSRSMLSEIERGSANPTLGVAFRIAQAFGM 71 Query: 76 PLWKLL 81 L L+ Sbjct: 72 TLGDLV 77 >gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 13 LVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSLDQL 72 Query: 81 LK 82 ++ Sbjct: 73 VE 74 >gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 199 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M RD+P L + R +RK+ +T + TG + S +S LE+G Sbjct: 1 MKEHDRDDPELESVLSG----VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRR 56 Query: 61 INIDNMIILAHTLDTPLWKLL 81 +++ M+ +A + PL L+ Sbjct: 57 PSLELMLPIARAHEVPLDDLV 77 >gi|94967258|ref|YP_589306.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549308|gb|ABF39232.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 119 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + R+ +++Q E+ R G ++ I+ +E G + I +LA LD +L Sbjct: 25 LFGHRLGSARRARRISQTELGRRIGVSRVTIANIERGGQNVQIAQAFVLAKALDIHPMEL 84 Query: 81 L 81 + Sbjct: 85 I 85 >gi|331082365|ref|ZP_08331491.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400851|gb|EGG80452.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium 6_1_63FAA] Length = 90 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE +TQKE+ +TG Q+ IS +E G ++D + LA + L Sbjct: 32 RAMVAARKERNMTQKELAEKTGITQADISRIENGTRNPSLDMIKRLAKGMGMRL 85 >gi|330399475|ref|YP_004030573.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312170212|emb|CBW77251.1| Transcriptional regulator, Cro/CI family [Burkholderia rhizoxinica HKI 454] Length = 130 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ LTQ+++ G AQ+ +S++E G+ +D + LA LD L L+ Sbjct: 16 GQAIARQRRLRGLTQEQLSEAAGLAQASLSQIERGRVLPGLDRLAQLAQLLDCRLVDLV 74 >gi|316936268|ref|YP_004111250.1| XRE family transcriptional regulator with shikimate kinase activity [Rhodopseudomonas palustris DX-1] gi|315603982|gb|ADU46517.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris DX-1] Length = 305 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R +++K + +G ++ +I++LE+GK ++I + ++ L TPL LL Sbjct: 15 LGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLEDLL 74 >gi|153008008|ref|YP_001369223.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559896|gb|ABS13394.1| putative transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 75 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N R R+E+ LTQ+ + G +++I +LE + + ++ + L+ L +L Sbjct: 6 IFARNLRLCRQESGLTQERLAEFAGLDRNFIGKLEREECSPTLETIEALSLALQINAERL 65 Query: 81 LK 82 ++ Sbjct: 66 IE 67 >gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016] gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 80 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RK +T + + G + IS++E K+ ++ + +A L+T +L Sbjct: 1 MLGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKANPSMPTLYKIAEALNTTPSEL 60 Query: 81 LK 82 +K Sbjct: 61 IK 62 >gi|269965492|ref|ZP_06179610.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829855|gb|EEZ84086.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 518 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] Length = 147 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + TQKE+ +G ++S I E G + + + +A++L + Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 80 LLKP 83 + P Sbjct: 61 MSDP 64 >gi|163938083|ref|YP_001642967.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229165063|ref|ZP_04292859.1| Transcriptional regulator Xre [Bacillus cereus AH621] gi|163860280|gb|ABY41339.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228618448|gb|EEK75477.1| Transcriptional regulator Xre [Bacillus cereus AH621] Length = 67 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A TL+ + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKTLNVSI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 DELM 65 >gi|86739571|ref|YP_479971.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566433|gb|ABD10242.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 497 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILA 70 + R R+ LTQ+++ +R GF QS++S++E+G+ I +I + +A Sbjct: 10 PPRSTPTSVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIA 69 Query: 71 HTLDTPLWKL-LKP 83 L + L P Sbjct: 70 RNLALSPEDVGLAP 83 >gi|28900055|ref|NP_799710.1| hypothetical protein VPA0200 [Vibrio parahaemolyticus RIMD 2210633] gi|260362248|ref|ZP_05775227.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus K5030] gi|260880630|ref|ZP_05892985.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AN-5034] gi|308095335|ref|ZP_05905081.2| transcriptional regulator, XRE family [Vibrio parahaemolyticus Peru-466] gi|28808338|dbj|BAC61543.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086815|gb|EFO36510.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus Peru-466] gi|308092173|gb|EFO41868.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AN-5034] gi|308115606|gb|EFO53146.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus K5030] Length = 518 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 114 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +E +TQ E TG AQS IS+ + K+ + D +++++ LD ++ Sbjct: 1 MIISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKRKKTNPSADKIMVISDVLDVSPFE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLQ 63 >gi|291445816|ref|ZP_06585206.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291348763|gb|EFE75667.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 205 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + TG + ++S++E G + D + +A L L Sbjct: 47 LGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 105 >gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] Length = 143 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + TQKE+ +G ++S I E G + + + +A++L + Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 80 LLKP 83 + P Sbjct: 61 MSDP 64 >gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 182 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R+ A L+ E+ R G A+S +S+LE G +I+ + L L+ P +L Sbjct: 7 IIAAGLVRERQRAGLSLTEVARRAGVAKSTLSQLEAGNGNPSIETLWSLCVALNIPFARL 66 Query: 81 LKP 83 ++P Sbjct: 67 MEP 69 >gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] Length = 169 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|163851665|ref|YP_001639708.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218530471|ref|YP_002421287.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240138832|ref|YP_002963307.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254561435|ref|YP_003068530.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163663270|gb|ABY30637.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218522774|gb|ACK83359.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|240008804|gb|ACS40030.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254268713|emb|CAX24672.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 201 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + ER + R +R+E L+ ++ + G + IS++E G + ++ ++ +A Sbjct: 9 PVAEERPLEKALGHQVRLLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIA 68 Query: 71 HTLDTPLWKLL 81 L+ P+ L Sbjct: 69 SALNVPITALF 79 >gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232] gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 254 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK LTQKE+ + I+ E G T + + LA+ L + L Sbjct: 11 GSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGFRTPKKNTLFKLANALSVTIDDLFP 70 Query: 83 P 83 P Sbjct: 71 P 71 >gi|302520593|ref|ZP_07272935.1| predicted protein [Streptomyces sp. SPB78] gi|302429488|gb|EFL01304.1| predicted protein [Streptomyces sp. SPB78] Length = 211 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ L+ + R+G ++ +S LE G ++ + + L PL Sbjct: 45 VGARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPL 100 >gi|256848879|ref|ZP_05554313.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714418|gb|EEU29405.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 115 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R NN + +RK+ L Q E+ +Q I ETG++ D + ILA Sbjct: 5 DRKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAIPGSDTLKILADYFQVST 64 Query: 78 WKLL 81 +LL Sbjct: 65 DELL 68 >gi|255038320|ref|YP_003088941.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254951076|gb|ACT95776.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 124 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR + L+Q+ + + G + + ++E G++ +++ + +A LD PL +LL Sbjct: 9 EKIRQIRLQKGLSQENMADMLGLSTTAYGDIERGRTELSVSRLENVAKLLDVPLPELL 66 >gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] Length = 421 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ KLTQ+++ + +S++S++E G + + + L++ L+ + Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 81 L 81 Sbjct: 60 F 60 >gi|300776282|ref|ZP_07086140.1| MerR family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300501792|gb|EFK32932.1| MerR family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 492 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F + R++ + +++ +TG ++S+++E+E GK D +I L+ L Sbjct: 9 KTVFGLKLKQQRQKRNWSLQDLAVKTGLSKSYLNEIENGKKYPKHDKIIQLSEALSCTFD 68 Query: 79 KLL 81 L+ Sbjct: 69 DLV 71 >gi|222100228|ref|YP_002534796.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359] gi|221572618|gb|ACM23430.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359] Length = 113 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK LTQK++ + G +QS +S++ETG+ I+I + + L Sbjct: 39 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 90 >gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] Length = 421 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ KLTQ+++ + +S++S++E G + + + L++ L+ + Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 81 L 81 Sbjct: 60 F 60 >gi|125623644|ref|YP_001032127.1| hypothetical protein llmg_0793 [Lactococcus lactis subsp. cremoris MG1363] gi|124492452|emb|CAL97394.1| CI [Lactococcus lactis subsp. cremoris MG1363] gi|300070411|gb|ADJ59811.1| hypothetical protein LLNZ_04110 [Lactococcus lactis subsp. cremoris NZ9000] Length = 165 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK A L+Q+ + ++ G +S IS E+G+ + M+ L + L L+ Sbjct: 6 FAERLKEARKAANLSQQALADKIGRTKSTISRWESGERNPKMFEMVELENILGIQARDLM 65 >gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] Length = 516 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + I NN R +R LT + + S +S +E G I + + +A L T Sbjct: 2 QKIVGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIKVSLLQKIAEVLGTSP 60 >gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus ATCC 10987] gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus] gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus] gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987] gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus] gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus] gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] Length = 421 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ KLTQ+++ + +S++S++E G + + + L++ L+ + Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 81 L 81 Sbjct: 60 F 60 >gi|21219819|ref|NP_625598.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289772984|ref|ZP_06532362.1| transcriptional regulatory protein [Streptomyces lividans TK24] gi|14575569|emb|CAC42859.1| putative transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289703183|gb|EFD70612.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 201 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + + R G ++ + ++E ++ ++ ++ + L + Sbjct: 20 QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 79 Query: 80 LL 81 LL Sbjct: 80 LL 81 >gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4] gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4] Length = 216 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R+ +TQKE + G Q ++S +E GK + + +I L H Sbjct: 13 GLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERGKKSPSDTLLIALCHLYKI 65 >gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] Length = 259 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ER+ + R+ R+ A ++ +E+ R + S +S++E G ++ ++ + + Sbjct: 20 DHQPSTAERIAIGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRALYRVV 79 Query: 71 HTLDTPLWKLL 81 L+ + L Sbjct: 80 SELEISMDSLF 90 >gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 318 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+++ + G + +S ETG + ++ ++ LA D + +LL Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSVLVQLAEYYDVEMRELL 65 >gi|257470593|ref|ZP_05634683.1| putative transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317064799|ref|ZP_07929284.1| DNA-binding protein [Fusobacterium ulcerans ATCC 49185] gi|313690475|gb|EFS27310.1| DNA-binding protein [Fusobacterium ulcerans ATCC 49185] Length = 177 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + IRK T K++ + T + ++S +E ++ +I N+ + L L + Sbjct: 1 MTLGEKIKIIRKRKNYTLKDLSDMTKLSIGFLSNIERDLNSPSISNLQQICQALAVNLME 60 Query: 80 LLKP 83 +L P Sbjct: 61 ILDP 64 >gi|221632745|ref|YP_002521967.1| Helix-turn-helix domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221156190|gb|ACM05317.1| Helix-turn-helix domain protein [Thermomicrobium roseum DSM 5159] Length = 154 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R+ A+L+Q + R GF S++S LE+G+ + ++ LA L+ Sbjct: 4 FGQLLRRYRESARLSQSRLAQRAGFDHSYVSRLESGRRAPTREAILRLAEALELGPAD 61 >gi|210621162|ref|ZP_03292504.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] gi|210154899|gb|EEA85905.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] Length = 199 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK++ LTQ+E+ + +++ IS+ E+G+ +I ++ ++ D + +LL Sbjct: 3 FNEKLQYFRKKSNLTQEELAEKLFVSRTAISKWESGRGMPSISSLKAISEVFDVSIDELL 62 >gi|70734303|ref|YP_257943.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68348602|gb|AAY96208.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 209 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L +R R IRK KLT K++ R+G A S +S++E + +++ + + A L Sbjct: 17 LIDRTQVGARLRTIRKNQKLTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALGV 76 Query: 76 PLWKLLKP 83 + +L P Sbjct: 77 DIARLFTP 84 >gi|299134624|ref|ZP_07027816.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590434|gb|EFI50637.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 485 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 R +F FR +RK+ L+Q +I G + S+I+ +E + + ++ LA T Sbjct: 4 PTETGRKLFVGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAET 63 Query: 73 LDTPLWKL 80 D L L Sbjct: 64 YDLDLRDL 71 >gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 184 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R A L+ E+ R G A+S +S+LE+G +++ + L L+ L Sbjct: 9 VIAGSLRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGNPSVETLWALCVALEIQFADL 68 Query: 81 LKP 83 + P Sbjct: 69 IDP 71 >gi|167841812|ref|ZP_02468496.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + + N R + + KLT E G ++ ++S++E G++ +I +++ +A Sbjct: 5 PDESVLVAVSLGNKIRALWQRLKLTLDETATTAGISKPFLSQVERGRARPSITSLVRIAK 64 Query: 72 TLDTPL 77 L + Sbjct: 65 ALGVTM 70 >gi|152988204|ref|YP_001349378.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150963362|gb|ABR85387.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 195 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M + L + R ++ N R +R +A L+Q+ + ++ + +E+G Sbjct: 1 MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 60 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 +++ + +A L L++ Sbjct: 61 VNVSLSTLDRIAAALGVLFPDLVQ 84 >gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 201 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + T ++ TG A+S +S++E G + D +I LA L + +L Sbjct: 13 LLGQRIRAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDALIKLATGLQIDISEL 72 Query: 81 LKP 83 +P Sbjct: 73 FEP 75 >gi|39937845|ref|NP_950121.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651705|emb|CAE30227.1| possible Shikimate kinase with a Helix-turn-helix domain [Rhodopseudomonas palustris CGA009] Length = 305 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R +++K + +G ++ +I++LE+GK ++I + ++ L TPL LL Sbjct: 15 LGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLEDLL 74 >gi|332285621|ref|YP_004417532.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] gi|330429574|gb|AEC20908.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] Length = 187 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + +++ RTG +S++S+LE G S +I ++ LA + + +L+ Sbjct: 7 RLKALRRQYQFSLEQLSQRTGLTKSYLSKLERGVSEPSISTVLKLAQAYEIGVSQLI 63 >gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 170 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|273809592|ref|YP_003344830.1| cI repressor protein [Aggregatibacter phage S1249] gi|261410499|gb|ACX80330.1| cI repressor protein [Aggregatibacter phage S1249] Length = 219 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R A LTQ+ + ++ ++ +S +E G++T + N++ +A PL + Sbjct: 10 VKKARNAAGLTQEALADKLNMTKANVSAMENGRTTPSFINILEMATLAGIPLPHV 64 >gi|224369019|ref|YP_002603183.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223691736|gb|ACN15019.1| putative transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 103 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR ++TQKE+ + G +Q+++S +E+G + D + A L L+ Sbjct: 3 LGQLLKFIRTSKEMTQKEMASLIGISQNYLSLIESGTKNPSSDKLSDFAEALQISKDALI 62 >gi|78060915|ref|YP_370823.1| transcriptional regulator [Burkholderia sp. 383] gi|77968800|gb|ABB10179.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia sp. 383] Length = 211 Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Query: 1 MPRRKRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP+ P +DA + + R+ RK LT ++ R+G A S IS+ E G Sbjct: 1 MPKSTVPVPPPTDAAPQLDHQTVGARLRDARKSRGLTLAQLSERSGIAVSTISKAERGDI 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + D L H L + Sbjct: 61 ALTYDKFAALTHALALDFDTMF 82 >gi|331092590|ref|ZP_08341409.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400601|gb|EGG80215.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] Length = 162 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE KL+Q EI + + +S E G S NI+ M LA + ++L+ Sbjct: 5 EKLCKYRKERKLSQAEIAEKLNVTRQKVSRWEHGTSVPNIETMKQLAEIYGVNVTEMLQ 63 >gi|319653363|ref|ZP_08007463.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317394847|gb|EFV75585.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 107 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + + +R++ K++ E+ ++ G A+S++S LE ++ +I + +A L+ P+ Sbjct: 1 MIGDRVKKLRQDKKMSLSELADQAGVAKSYLSSLERNLQTNPSIQFLEKIAGVLNVPVDH 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|310830222|ref|YP_003965322.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753128|gb|ADO44271.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 197 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R +TQ+ + ++ G +IS++E G + ++ ++ ++ L + + Sbjct: 8 VGDALRARRIALGITQRVVADQAGLTTGFISQVERGLTAPSLSSLHAISKVLGLSPLQFI 67 >gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 460 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R + +TQ ++ F+ S+IS +E GK ++ + ILA LD PL LL Sbjct: 17 VGTNIREVRTKLNMTQAQLAA-PEFSISYISAIERGKIRPSLKALSILARRLDVPLTFLL 75 Query: 82 K 82 + Sbjct: 76 E 76 >gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 384 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +R+ +TQ+ + + G ++ +S+ E G + +D ++ L T L Sbjct: 1 MSFADNLVYLRQHYGVTQEGLAEQLGVSRQTVSKWEAGTNYPEMDKLLALCDLFHTNLDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LMR 63 >gi|291520596|emb|CBK75817.1| Predicted transcriptional regulators [Butyrivibrio fibrisolvens 16/4] Length = 81 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R D A L R R+ R + LTQ+ + R G +S IS +E+GK Sbjct: 1 MKNRYADGVVTPQA-LAARNSIAQELRDTRHQLNLTQESLAQRVGTKKSNISRMESGKYN 59 Query: 61 INIDNMIILAHTLDT 75 ++D ++ +A ++ Sbjct: 60 PSLDFLVKVAESMGK 74 >gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] Length = 107 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + ++ L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176] gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176] Length = 209 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + RK K +Q EI G Q + + ETG+ST + + LA LDT L Sbjct: 1 MFADRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDTTADVL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225572080|ref|ZP_03780944.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] gi|225040414|gb|EEG50660.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] Length = 192 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E +Q+ + + ++ IS E GKS +++++++L+ + L KL+ Sbjct: 3 LGKQIRRYRNERSFSQETLAEKVYVSRQTISNWENGKSYPDVNSLVLLSEAFEVSLDKLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + + + + LD +LL Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 >gi|163747316|ref|ZP_02154670.1| possible transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] gi|161379426|gb|EDQ03841.1| possible transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] Length = 69 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N + +R+ L+Q+E+ +R ++ + +LE K ++D + +A L+ Sbjct: 4 RDRVALNIQELRRARSLSQEELAHRADVSRGHMGKLENAKFAASLDLLERIAKALNVDPA 63 Query: 79 KLLK 82 +L Sbjct: 64 ELFT 67 >gi|27366645|ref|NP_762172.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|320158536|ref|YP_004190914.1| putative transcriptional regulator [Vibrio vulnificus MO6-24/O] gi|27358211|gb|AAO07162.1|AE016808_182 Predicted transcriptional regulator [Vibrio vulnificus CMCP6] gi|319933848|gb|ADV88711.1| predicted transcriptional regulator [Vibrio vulnificus MO6-24/O] Length = 207 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + +R +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLKIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|24378654|ref|NP_720609.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376514|gb|AAN57915.1|AE014865_6 putative transcriptional regulator [Streptococcus mutans UA159] Length = 117 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 24/63 (38%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N R R+ ++Q+ + + G +I+++E +++ + + L Sbjct: 8 QKYVANKVRYHRQAQGISQESLSEKAGLGLKYINQIENQNHNLSLQTLEKVIEALGMTPE 67 Query: 79 KLL 81 Sbjct: 68 DFF 70 >gi|152976782|ref|YP_001376299.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025534|gb|ABS23304.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 181 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62 >gi|331702621|ref|YP_004399580.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129964|gb|AEB74517.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 201 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R E LTQK++ + ++ IS ET S +ID++I L+ L LL Sbjct: 3 FGARLKTERIELGLTQKQVADTMNVSRQTISSWETENSYPDIDSLIQLSDLFHISLDVLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|331697390|ref|YP_004333629.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326952079|gb|AEA25776.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 190 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R L+ E+ R G ++S +S+LE+G +++ + LA L P +L++ Sbjct: 17 ADAVRRERTRRDLSLGELARRAGLSKSTLSQLESGAGNPSVETLWALAVALGVPFARLVE 76 >gi|293396666|ref|ZP_06640942.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291420930|gb|EFE94183.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 197 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N R R++A L+Q + +G ++ ++ +E G +++ + LA L+ L++ Sbjct: 27 SNVRGYRQQAGLSQMALAGLSGVSRRMLAGIEAGDRNVSLAVLDKLAAALEVSFTDLIQ 85 >gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264] gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264] Length = 293 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F ++ RK+AK++Q+++ + G ++ +++ ETG I+N+ ++ + + + Sbjct: 1 MTFAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IRKE T + + +TG ++ +S++E G S ++D++ + L++P+ Sbjct: 6 ETIGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQPSLDSLWKITKALESPIIH 65 Query: 80 LLK 82 + Sbjct: 66 FFE 68 >gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 193 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LT + + R G ++S IS +E +S+ + L+ L L L Sbjct: 12 LAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAESSPTATVLERLSAGLGVSLAALF 71 Query: 82 KP 83 P Sbjct: 72 SP 73 >gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] Length = 157 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + + + + LD +LL Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 >gi|114765017|ref|ZP_01444164.1| DNA binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542564|gb|EAU45589.1| DNA binding protein, putative [Roseovarius sp. HTCC2601] Length = 189 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+ + +G ++S +S++E G+S + + L L LL+ Sbjct: 16 RLKEARQARGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLLE 73 >gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia enterocolitica subsp. palearctica Y11] Length = 188 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+E + + +TG +++ + ++E G+S+ + + +A L+ + L+ Sbjct: 9 GNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQFLE 68 >gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 189 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IRK L+ + TG +++ + ++E G S I + + L Sbjct: 2 EPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGI 61 Query: 76 PLWKLL 81 L+ Sbjct: 62 SFTTLI 67 >gi|309776164|ref|ZP_07671155.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916115|gb|EFP61864.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 90 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R R P+ + + + +R E LTQ E+ N G +++I +E G ++ Sbjct: 8 RIRPIPYDKEDKELLKEM-GKKINRLRVEKNLTQNELANMAGVHKNFICIIENGVQNPSL 66 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ + LDT L++ Sbjct: 67 LSLYHIIRVLDTSLYEFF 84 >gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24] gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24] Length = 200 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 14 LVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 73 Query: 81 LK 82 ++ Sbjct: 74 VE 75 >gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family [Hydrogenobacter thermophilus TK-6] Length = 336 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + L+Q+E+ G +S +S +E+G++ +++ I L+ L + +L Sbjct: 3 NKVKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAVPSVEYAIKLSKALGCTVEELF 60 >gi|288556445|ref|YP_003428380.1| hypothetical protein BpOF4_17235 [Bacillus pseudofirmus OF4] gi|288547605|gb|ADC51488.1| hypothetical protein BpOF4_17235 [Bacillus pseudofirmus OF4] Length = 97 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 30/55 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F R R A LT E+ R+ +++ISE+E GK I++D ++ LA + + Sbjct: 11 ESFGVIIRTKRNRAGLTIAELAWRSDLTETYISEIENGKRNISLDIIMKLAASFE 65 >gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 257 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F RK+ KLTQKE+ + + +S+ E G S +I + LA L + Sbjct: 6 KEQFGRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSSMPDIALLTPLAEALGVTVT 65 Query: 79 KLLK 82 +LL+ Sbjct: 66 ELLE 69 >gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 112 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +++RKEAKLTQK+I ++ GF+Q + E+GK + + + A + L Sbjct: 1 MFSERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGKKKPSAETLEKFASFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|219666089|ref|YP_002456524.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536349|gb|ACL18088.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 68 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E LTQKE+ + G ++ I+ +ETGK ++ LA + +L Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWLAYDLAKLFKVSIEELF 60 >gi|330503455|ref|YP_004380324.1| putative helix-turn-helix transcriptional regulatory protein [Pseudomonas mendocina NK-01] gi|328917741|gb|AEB58572.1| putative helix-turn-helix transcriptional regulatory protein [Pseudomonas mendocina NK-01] Length = 271 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R++A L+Q E+ TG +Q +S +ETG++ + + L L+ PL + Sbjct: 16 GLQLRQLRRQASLSQLELALLTGVSQRHLSCIETGRAKPSPATLHALLMALEAPLEQ 72 >gi|329117060|ref|ZP_08245777.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907465|gb|EGE54379.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 183 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +RK+ L+QKE+ G + IS +E + N+ +A + L Sbjct: 5 FAPNLIRLRKQKGLSQKELAQELGISSQTISNIENQSAYPTFTNLEKIAGFFNASPTDLF 64 >gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 214 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + N + IR LTQ ++ + ++ IS E G++ I+ +I A + LL Sbjct: 4 YGENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAEPKIETIIKTAEVFQVTIDTLL 63 Query: 82 K 82 K Sbjct: 64 K 64 >gi|313113313|ref|ZP_07798912.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624366|gb|EFQ07722.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK K+TQ ++ ++ + +I+ +E GK + D + + H L L ++ Sbjct: 11 LGKQIKAVRKAMKMTQDQLALKSNVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSVI 70 Query: 82 KP 83 P Sbjct: 71 NP 72 >gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 117 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R + L+Q+++ G S++ +E ++++ I ++ L+ L LL Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISISTVLEISLDYLL 72 >gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] Length = 149 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] Length = 112 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK L Q E+ + G Q ++S +E S +I+ ++ LA+ L+T + L Sbjct: 13 GKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISIPSIEVIMKLAYVLNTTPDEFL 71 >gi|153837553|ref|ZP_01990220.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus AQ3810] gi|149749149|gb|EDM59954.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus AQ3810] Length = 518 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|296330585|ref|ZP_06873063.1| transcriptional regulator, XRE family protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674633|ref|YP_003866305.1| XRE family transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152267|gb|EFG93138.1| transcriptional regulator, XRE family protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412877|gb|ADM37996.1| transcriptional regulator, XRE family protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + IRK+ K++Q E GF S++S +E GK+ +I + + L+ Sbjct: 7 FGCLLQKIRKKRKMSQIEFAQLLGFTASYVSRVERGKANPSIQAIEKITKQLNI 60 >gi|288962833|ref|YP_003453127.1| transcriptional regulator [Azospirillum sp. B510] gi|288915099|dbj|BAI76583.1| transcriptional regulator [Azospirillum sp. B510] Length = 226 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R+ D + + R+ LT K++ RTG A S +S++E G+ + Sbjct: 1 MAARRNGLMRDHDELANTTSRLGVCLKAARRARGLTLKQVAERTGMALSTLSKVENGQMS 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + D ++ L L + +L +P Sbjct: 61 LTYDKLLQLTAGLKIEIAELFEP 83 >gi|258512346|ref|YP_003185780.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479072|gb|ACV59391.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 82 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R RK L+ +E+ R G + S+I +E+G N + ++A L L L Sbjct: 4 LAQRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDL 62 >gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24] Length = 197 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 11 LVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|229027921|ref|ZP_04184076.1| Transcriptional regulator Xre [Bacillus cereus AH1271] gi|229170925|ref|ZP_04298528.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228612591|gb|EEK69810.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228733435|gb|EEL84262.1| Transcriptional regulator Xre [Bacillus cereus AH1271] Length = 67 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSV 61 Query: 78 WKLL 81 +L+ Sbjct: 62 EELM 65 >gi|229815931|ref|ZP_04446254.1| hypothetical protein COLINT_02986 [Collinsella intestinalis DSM 13280] gi|229808484|gb|EEP44263.1| hypothetical protein COLINT_02986 [Collinsella intestinalis DSM 13280] Length = 69 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R N IR+ + L++ + + G ++ + +E+G S + + + +A L T Sbjct: 5 ARQNLGENLIAIREASGLSKVDFALQLGISRVLLDLIESGNSNLKLSTLEKIADRLGTQP 64 Query: 78 WKLLK 82 WKL++ Sbjct: 65 WKLIR 69 >gi|67078349|ref|YP_245967.1| transcriptional regulator [Bacillus cereus E33L] gi|66970655|gb|AAY60629.1| transcriptional regulator [Bacillus cereus E33L] Length = 87 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E +TQ E+ T ++ I +E G+ ++ I + +L L L Sbjct: 27 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 83 >gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831] gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 179 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R++ +Q + + ++ +S+ ETGK+ +I+ +I L+ D + + Sbjct: 28 MFFGEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKNYPSIEVIINLSDLFDITIDE 87 Query: 80 LLK 82 LL+ Sbjct: 88 LLR 90 >gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 483 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +++ FR IR++ L+Q ++ G + S+++ +E + + ++ LA Sbjct: 3 PDPGKKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVTAQILLRLAEAY 62 Query: 74 DTPLWKL 80 D L L Sbjct: 63 DLDLRDL 69 >gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 184 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +RK L+ +++ + +G +++ IS++E S+ + + LA +L L + Sbjct: 5 QLIATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDSSPSASLLGRLAASLGVSLAQ 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5] gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5] Length = 211 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + + + + LD +LL Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 >gi|323528479|ref|YP_004230631.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385481|gb|ADX57571.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 215 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R + L + + + R RK LT E+ R+G A S IS+ E G + D Sbjct: 10 RASADEAPPAL-DHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDK 68 Query: 66 MIILAHTLDTPLWKLL 81 LAH+L+ + Sbjct: 69 FAALAHSLELEFDAIF 84 >gi|313896884|ref|ZP_07830431.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974331|gb|EFR39799.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 96 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +++ ER I + R A LTQKE+ ++G AQS IS+LE G + ++ + LA Sbjct: 25 ESLQPERAII-EAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLAAG 83 Query: 73 LDTPLWKLLKP 83 + L P Sbjct: 84 MGMRLHLEFLP 94 >gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15] gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15] Length = 249 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R E TQ+E+ ++ G +++ I E G + D M LA+ + L Sbjct: 9 VIGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGIRSPKKDTMFDLANAFGISIDDL 68 Query: 81 L 81 Sbjct: 69 F 69 >gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 203 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 11 LVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|300853247|ref|YP_003778231.1| putative phage protein with HTH motif [Clostridium ljungdahlii DSM 13528] gi|300433362|gb|ADK13129.1| putative phage protein with HTH motif [Clostridium ljungdahlii DSM 13528] Length = 187 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + +N + R + ++Q+E+ R G +IS LE + +++ + ++ L+ Sbjct: 1 MLGDNIKKFRTQIGISQRELGRRIGKTGQYISYLEKNMNTNPSLEVLNNISKELNVNTND 60 Query: 80 LLKP 83 L+KP Sbjct: 61 LIKP 64 >gi|289522774|ref|ZP_06439628.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504610|gb|EFD25774.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 137 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ M + IR++ LTQ E+ + G + +I LE+ + ++ + +A L Sbjct: 22 RDLMSLGLKIKRIRQQRGLTQGELASIVGVSSGYIQALESNRRNGSLKILKKIAEALAVD 81 Query: 77 LWKLLK 82 +LL+ Sbjct: 82 TSELLE 87 >gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + TQKE+ +G ++S I E G + + + +A++L + Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 80 LLKP 83 + P Sbjct: 61 MSDP 64 >gi|257868622|ref|ZP_05648275.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802786|gb|EEV31608.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 172 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R+++ L+Q + ++ IS+ E G+ +IDN+++L+ + + Sbjct: 1 MALAEQLKLYREKSGLSQASVAEELKISRQSISKWENGRGYPDIDNLVLLSKLYQVSIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLQ 63 >gi|91224263|ref|ZP_01259526.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01] gi|91191174|gb|EAS77440.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01] Length = 518 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|15674195|ref|NP_268370.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12725279|gb|AAK06311.1|AE006450_4 transcription regulator [Lactococcus lactis subsp. lactis Il1403] Length = 102 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +R E KLTQ ++ R G + +S E K +++ +I L T D LL Sbjct: 6 FGDKLRALRMEKKLTQNDLAARLGIVGASVSSYEKNKQYPSVEVLIQLCQTFDVSADYLL 65 >gi|218892158|ref|YP_002441025.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234978|ref|ZP_04928301.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|126166909|gb|EAZ52420.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|218772384|emb|CAW28166.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 183 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RKE +LT ++ R +++ IS +E +S+ + LA L L + Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|89096264|ref|ZP_01169157.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89089118|gb|EAR68226.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 73 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E NN + R +A+LTQ+E+ +R G + +S +E GK ++ + + + + + L Sbjct: 2 EEKYMKNNVKQARLQAELTQQELADRVGITRQTVSLIEKGKYNPSLKLCLQICYAVQSKL 61 Query: 78 WKLL 81 +L Sbjct: 62 DELF 65 >gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] Length = 187 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RNIR+ L+ TG +++ + ++E G+S + + +A L L+ Sbjct: 13 GENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESNPTVTTLWKIASGLQISFSSLM 71 >gi|331092438|ref|ZP_08341263.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401281|gb|EGG80870.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] Length = 190 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N+R E K T K + TG + ++S+LE G ++I ID++ ++ LD L Sbjct: 6 IIGLRIKNLRTEKKYTLKYLSENTGLSIGFLSQLERGMTSIAIDSLDKISKVLDVELSSF 65 Query: 81 LK 82 Sbjct: 66 FT 67 >gi|330836178|ref|YP_004410819.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748081|gb|AEC01437.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 99 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 IRK LTQ E+ + G +Q+ IS++E GK I I + LA+ + + P Sbjct: 41 LSEIRKAQNLTQAELAEKVGLSQTDISKIEKGKKRITISRLQELANGMGMDVHITFVP 98 >gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++ E I + R R A L+ E+ R G A+S +S+LE+G +++ Sbjct: 3 RQSERTQPTPRPPLGRI-AASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGNPSVE 61 Query: 65 NMIILAHTLDTPLWKLLKP 83 + ++ TLD P +L+ P Sbjct: 62 TLWAISVTLDVPFSRLVDP 80 >gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] Length = 392 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R RK+A ++QKE+ G S +S+ E+GK I + LA P Sbjct: 4 VDYEALGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVP 63 Query: 77 LWKLL 81 L L Sbjct: 64 LSSLF 68 >gi|260892045|ref|YP_003238142.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864186|gb|ACX51292.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 118 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R+ L Q ++ G +S ++ E G +++ ++ L+ L +L+ Sbjct: 4 FGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQPSLETLVKLSQLFGVSLDELV 63 >gi|255528296|ref|ZP_05395109.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508014|gb|EET84441.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R IR+E LT E+ ++TG S++S++E ++ ++ ++ +L+ P++ Sbjct: 1 MLGPKIREIRQEKGLTLNELADKTGLTASYLSQIERNIIDPSLSSLRKISLSLEVPIYTF 60 Query: 81 LK 82 L Sbjct: 61 LT 62 >gi|225378306|ref|ZP_03755527.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] gi|83596349|gb|ABC25509.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] gi|225209873|gb|EEG92227.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] Length = 113 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K TQ+ + + G + +S +E G++ +++ + +A+ LDT L +L+ Sbjct: 9 GTRIKERRAKKKWTQEMLASAVGISNPHMSNIERGRTKVSLGTLTDIANALDTTLDELI 67 >gi|86739596|ref|YP_479996.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566458|gb|ABD10267.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 116 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R++ +Q + R G ++ I+ +E G I + + LA L+ +LL Sbjct: 10 LAQSVRKHRRQRGWSQAALAERLGLTRTTITNIEHGAQGITLLTFVRLAEQLNVGAPELL 69 >gi|331014804|gb|EGH94860.1| transcriptional regulator, PbsX family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 94 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+IRK+ LTQ++ + + +++++S LE G ID + LA L L+ Sbjct: 7 FGQVLRDIRKQRGLTQEDFSDVS--SRTYLSTLERGLKCPTIDKVAQLAEVLRVHPATLI 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|304394885|ref|ZP_07376769.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357138|gb|EFM21501.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 182 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R+ A L+ E+ R G A+S +S+LE G I+ + L TL+ P +L Sbjct: 7 IIANALVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|227545435|ref|ZP_03975484.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300908481|ref|ZP_07125944.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] gi|227184576|gb|EEI64647.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300893888|gb|EFK87246.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] Length = 293 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E +L+Q E+ R + +S+ E G + +ID +I+LA + L +L+ Sbjct: 5 FPHQLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLI 64 >gi|160916217|ref|ZP_02078424.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991] gi|158431941|gb|EDP10230.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991] Length = 69 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ +I NN R++RK L+Q E+ +G ++ IS +ETG+ ++L L+ Sbjct: 1 MKKELILKNNIRSVRKAKGLSQAELAAMSGVSRITISSIETGQFNPTAKLALLLCIALEQ 60 Query: 76 PLWKLL 81 L Sbjct: 61 KFEDLF 66 >gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 121 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R EAKL+QK++ + G + S + +E+GK N + + +A+ + L Sbjct: 4 LGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNKETIQKIANFFGVSIDYL 62 >gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1] Length = 222 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R RD + + E I N R +R++ LT E R G +++ +S++E +++ ++ Sbjct: 22 RDRDPGAPVEELEIESAI-GRNVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSL 80 Query: 64 DNMIILAHTLDTPLWKLLK 82 + +LA D P+ L + Sbjct: 81 STLALLAKGFDVPVTSLFR 99 >gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 273 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK K +Q+E+ G +S S E + ID +I L+ P+ LL Sbjct: 3 LGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAEPGIDTLIALSSYYGVPIDALL 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 170 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 183 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + L+ +E+ + + S++S++E GK++ +I+N+ +A +LD + L++ Sbjct: 5 GERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLIE 64 >gi|330825357|ref|YP_004388660.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329310729|gb|AEB85144.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 81 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H D +L + R R+ ++Q+++ + + +S++S +E G + +++ + Sbjct: 8 HAHDPVLTA---LGDAIRRSRRARGISQEDLAHVSAVDRSYMSSIERGVQNPGLVSIVRI 64 Query: 70 AHTLDTPLWKLL 81 A +D + +L+ Sbjct: 65 ARAMDMTVTELM 76 >gi|329920508|ref|ZP_08277240.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|328936184|gb|EGG32637.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 87 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|317055988|ref|YP_004104455.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315448257|gb|ADU21821.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 179 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R E LTQ E+ RTG ++S+IS+ +GK D + ILA L T LL Sbjct: 4 FAENLRTAMAERSLTQAELSKRTGISKSFISQYLSGKFKPREDKLSILAQALGTTKGALL 63 >gi|229074883|ref|ZP_04207892.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-18] gi|228708220|gb|EEL60384.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-18] Length = 59 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++Q+E+ +G +++IS LE GK I+ + LA L +L++ Sbjct: 1 MSQEELAFNSGLDRTYISLLERGKRKPTINTLFALARALKVNPSQLIE 48 >gi|192293630|ref|YP_001994235.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192287379|gb|ACF03760.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris TIE-1] Length = 305 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R +++K + +G ++ +I++LE+GK ++I + ++ L TPL LL Sbjct: 15 LGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLEDLL 74 >gi|170289284|ref|YP_001739522.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|170176787|gb|ACB09839.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] Length = 110 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK LTQK++ + G +QS +S++ETG+ I+I + + L Sbjct: 36 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87 >gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] Length = 248 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE TQKE+ + + IS+ E G S +I + LA L + +LL Sbjct: 12 FGGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLSLPDIALLEPLADILGVTVAELL 71 Query: 82 K 82 K Sbjct: 72 K 72 >gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 222 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R RD + + E I N R +R + LT E R G +++ +S++E +++ ++ Sbjct: 22 RDRDPAAPVEELEIEAAI-GRNVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSL 80 Query: 64 DNMIILAHTLDTPLWKLLK 82 + +LA D P+ L + Sbjct: 81 STLALLAKGFDVPVTSLFR 99 >gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 102 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + KL+Q + R G + S++S LE G+ + + +A L P+ L Sbjct: 4 GQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPLSTLQRIAAALVMPVEILF 62 >gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304] gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304] Length = 373 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R+E +TQ+E+ G ++ +S+ E+G+S +I + I+A D + LL Sbjct: 7 GRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQSYPDILLLPIIASYFDKTVDDLL 65 >gi|169334596|ref|ZP_02861789.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis DSM 17244] gi|169259313|gb|EDS73279.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis DSM 17244] Length = 117 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 29/57 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ + RK+ +TQ+ + + S +S +E G + +++ ++ +A+ L+ Sbjct: 6 LMLGEKLKQQRKKQGITQETLAEYVDLSVSHLSHIENGSTKVSLQTIVNIANILNIS 62 >gi|84687520|ref|ZP_01015396.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664429|gb|EAQ10917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 209 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 1 MPRRKRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP R + + + R++RK T ++ N+ G A+S +S++E G+ Sbjct: 8 MPSLIRLARESGGSAPDPQPLDLGERVRDLRKSRGWTLEQAANQAGLARSTLSKIENGQM 67 Query: 60 TINIDNMIILAHTLDTPLWKLLKP 83 + + + LA L+ + +L P Sbjct: 68 SPTFEALKKLAVGLEISVPQLFTP 91 >gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] Length = 170 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|255655753|ref|ZP_05401162.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451015|ref|ZP_06892760.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879020|ref|ZP_06903017.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260146|gb|EFH06996.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429973|gb|EFH15823.1| DNA-binding protein [Clostridium difficile NAP07] Length = 181 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ L+ +++ S +S++E G + +++++ +A +L+ PL+ Sbjct: 6 LGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTFF 65 >gi|148270580|ref|YP_001245040.1| helix-turn-helix domain-containing protein [Thermotoga petrophila RKU-1] gi|281412888|ref|YP_003346967.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|147736124|gb|ABQ47464.1| helix-turn-helix domain protein [Thermotoga petrophila RKU-1] gi|281373991|gb|ADA67553.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 127 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK LTQK++ + G +QS +S++ETG+ I+I + + L Sbjct: 36 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87 >gi|326317729|ref|YP_004235401.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374565|gb|ADX46834.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 304 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 35/68 (51%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + F ++ R+ R++ +L+Q+++ + +S +ETG++ + D ++ LA Sbjct: 32 PSPVPGTHSPFGDHLRHWRRQRRLSQQDLALEAEVSTRHLSCVETGRAAPSRDMVLRLAE 91 Query: 72 TLDTPLWK 79 L PL + Sbjct: 92 RLSVPLRE 99 >gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 169 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + +S+ E G S + D +I L+ L+TP+ L Sbjct: 1 MLSENIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] Length = 107 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 111 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ ++Q+E+ +TG ++IS +E G S + +IIL + L+ + Sbjct: 7 GKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVSADAIF 65 >gi|297163316|gb|ADI13028.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 101 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ ++Q+ + G +Q+ I+++E G ST ID M L L Sbjct: 27 LKKARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAYITALGGEL 78 >gi|269794649|ref|YP_003314104.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] gi|269096834|gb|ACZ21270.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter keddieii DSM 10542] Length = 509 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ RK TQ + ++ G +QS ++ +E G +++D + ++ LD L L Sbjct: 13 IRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQNLSLDTVRRISEALDAELLTL 67 >gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7] gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7] Length = 181 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R++RKE LT K++ N TG + S++S++E S++ I ++ ++ L Sbjct: 6 AQKIRDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSLKKISDALGV 58 >gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] Length = 211 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRK + Q+E+ ++ G +S++E G + + + + LD +LL Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70 >gi|315446756|ref|YP_004079635.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|315265059|gb|ADU01801.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 83 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 1 MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP R ++ P R + R +R +TQ+ + R+G ++ + ++E G+ Sbjct: 1 MPTRPSQNNPERVAQWEHWRRLVGAMIRELRIARNMTQEALALRSGVTRNVLIDVEHGRR 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + + + +A LD + +LL Sbjct: 61 GLLYERLFDIADALDVNVAELL 82 >gi|312875437|ref|ZP_07735441.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315653809|ref|ZP_07906725.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|311089100|gb|EFQ47540.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315488505|gb|EFU78151.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] Length = 210 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|309807458|ref|ZP_07701419.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|308169278|gb|EFO71335.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] Length = 210 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ RN R EA LTQ+E+ +++ +++ E G+ ++ N+ ++A L + Sbjct: 1 MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 277 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + ++ + +S+ E G+ + +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia enterocolitica W22703] Length = 206 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+E + + +TG +++ + ++E G+S+ + + +A L+ + L+ Sbjct: 27 GNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQFLE 86 >gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 188 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +N+R+E + + +TG +++ + ++E G+S+ + + +A L+ + L+ Sbjct: 9 GNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQFLE 68 >gi|259415871|ref|ZP_05739791.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259347310|gb|EEW59087.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 209 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 + E + R +RK+ T + ++ G A+S +S++E G+ + + + Sbjct: 13 AHANGEQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYEALK 72 Query: 68 ILAHTLDTPLWKLLKP 83 LA L + +L P Sbjct: 73 KLAVGLQISVPQLFTP 88 >gi|182417693|ref|ZP_02949012.1| DNA-binding protein [Clostridium butyricum 5521] gi|237667491|ref|ZP_04527475.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378417|gb|EDT75948.1| DNA-binding protein [Clostridium butyricum 5521] gi|237655839|gb|EEP53395.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ N +NIR L+ ++ TG +++ + ++E GKS + + ++ L Sbjct: 6 LVIGNKLKNIRNSRNLSLDDVAELTGVSKAMLGQIERGKSNPTVSTLWKISTGLRVS 62 >gi|49081786|gb|AAT50293.1| PA1884 [synthetic construct] Length = 184 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RKE +LT ++ R +++ IS +E +S+ + LA L L + Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|13475454|ref|NP_107018.1| hypothetical protein mlr6529 [Mesorhizobium loti MAFF303099] gi|14026206|dbj|BAB52804.1| mlr6529 [Mesorhizobium loti MAFF303099] Length = 514 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 13 DAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + E+ IF R IR LTQ + G + S+++ +E + + + ++ LA Sbjct: 30 EKSMAEQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLAS 89 Query: 72 TLDTPLWKL 80 +L Sbjct: 90 VYKVDPHEL 98 >gi|256377557|ref|YP_003101217.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921860|gb|ACU37371.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 737 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74 + R R+ A LTQ+++ +G + IS LE G + +D + +LA L Sbjct: 5 LGPSLRRARRSAGLTQEQLSAASGISVRTISRLENGADENVRLDTLRLLADALG 58 >gi|254463689|ref|ZP_05077100.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206684597|gb|EDZ45079.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 189 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + R +RK LT ++ + W+S++E S +I ++ +A L P Sbjct: 6 RAAATLGADIRALRKARGLTLTDVAAVLNRSVGWLSQVERDMSEPSISDLRQIAEALGVP 65 Query: 77 LWKLL 81 + L Sbjct: 66 MSMLF 70 >gi|322834304|ref|YP_004214331.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169505|gb|ADW75204.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 182 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+ A L+ E+ R G A+S +S+LE G +++ + L L+ P +L Sbjct: 7 VISKGLVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARL 66 Query: 81 LKP 83 ++P Sbjct: 67 MEP 69 >gi|307244410|ref|ZP_07526521.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492229|gb|EFM64271.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 63 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R R++ TQ E+ G ++ ++S++ET K I A L + +L Sbjct: 2 GNNLRQFREKRGFTQTELSTAVGISRQYLSDIETLKKQPTIKIAFDCARVLKVSIEELF 60 >gi|296105700|ref|YP_003617400.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99 Alcoy] gi|295647601|gb|ADG23448.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99 Alcoy] Length = 81 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RKE +Q++ ++ ++++ +E G+ + I +I +A L + L+ Sbjct: 12 GKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALILGVEVATLI 70 >gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 315 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+++ + G + +S ETG + ++ ++ LA D + +LL Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTNLPDLSILVELAEYYDVEMRELL 65 >gi|291450131|ref|ZP_06589521.1| transcriptional regulatory protein [Streptomyces albus J1074] gi|291353080|gb|EFE79982.1| transcriptional regulatory protein [Streptomyces albus J1074] Length = 201 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P R ++SD L R + N R+ R E T + R+G +++ + ++E ++ Sbjct: 7 LPGR-----NVSDLDLLTRSL-ARNVRHWRAERGFTLDALATRSGVSRNMLIQIEQARTN 60 Query: 61 INIDNMIILAHTLDTPLWKLL 81 +I ++ + L + LL Sbjct: 61 PSIATVVKIGDALGVSVTSLL 81 >gi|27764000|emb|CAD60517.1| Cinorf4 protein [Streptomyces cinnamoneus] Length = 190 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R+G ++ I ++E ++ ++ + LA L + Sbjct: 9 QSLARNLKRWRGERHFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 169 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204] gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204] Length = 180 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R + LT +E+ +RT + ++S+LE ++ +I + +A L + + Sbjct: 5 GHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLTSPSIQTLADIAEALGVDMSRFF 63 >gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus ND03] Length = 170 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ +T + TG + S +S LE+G +++ ++ +A + PL L+ Sbjct: 21 VGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 80 >gi|239835028|ref|ZP_04683356.1| Protein schB [Ochrobactrum intermedium LMG 3301] gi|239823091|gb|EEQ94660.1| Protein schB [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 1 MPRRKRDE----PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 MP+ + E +S+ + R R+ LT + +G + +S++E Sbjct: 1 MPKVNKAEISRIAPISEPTPNDAGDIGARIRTRRQALGLTLGYLSEVSGLSTGALSQIER 60 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83 G + + + +A L +L+ P Sbjct: 61 GLVSPTVRTLYTIADVLSMSPAQLIDP 87 >gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + A+ + R RKE LT +++ +G A S IS+ E G+ ++ + +++L + Sbjct: 36 AAAMPAGKHEVGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQIALSYEKVLMLGN 95 Query: 72 TLDTPLWKLL 81 LD + +L Sbjct: 96 ALDIDMTRLF 105 >gi|323140941|ref|ZP_08075854.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414679|gb|EFY05485.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 72 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R+ +TQ E+ + +++ +S++E GK N++++ +LA L + Sbjct: 7 KTIGLNIMYYRRALSMTQSELAEKAQMSRARVSDIECGKGPFNMESIFLLAQALGVDPVR 66 Query: 80 LLK 82 LL+ Sbjct: 67 LLQ 69 >gi|317498013|ref|ZP_07956317.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894689|gb|EFV16867.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + IRK TQ+E+ + + IS+ E G S + D + LA L+ + +L Sbjct: 1 MFNENLKIIRKAKGYTQEELAIKIHVVRQTISKWEKGLSVPDADTLSKLADVLEIKVSEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225028162|ref|ZP_03717354.1| hypothetical protein EUBHAL_02434 [Eubacterium hallii DSM 3353] gi|224954474|gb|EEG35683.1| hypothetical protein EUBHAL_02434 [Eubacterium hallii DSM 3353] Length = 187 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR ++ E+ +TG ++S ++++E G + ++ + + L L+ Sbjct: 8 VAVNLKQIRLSKGMSLGEVAEQTGVSKSMLAQIEKGTANPSLGVLGKITSGLRIEFQTLI 67 Query: 82 KP 83 P Sbjct: 68 DP 69 >gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] Length = 263 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + RK L+Q E+ +++G +++ IS E K NI + +A L + L+ Sbjct: 3 VGDRIKYFRKAENLSQDELASKSGLSRNAISNYELNKRQPNIVVLKKIADALKVDIDDLI 62 >gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 149 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12] gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] Length = 198 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ L+Q+E+ ++ ++ I E G+ + ++ + + L++ + Sbjct: 4 YGKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFNEFF 63 >gi|237750719|ref|ZP_04581199.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373809|gb|EEO24200.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 243 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+E LTQ ++ +G +++ + E K I +DN+ +A+ LD + L Sbjct: 3 LGLKIKTAREEKGLTQNDLVKISGVSRASLQLYEADKGNITLDNLEKIANALDYEVVHFL 62 >gi|227872217|ref|ZP_03990579.1| XRE family transcriptional regulator [Oribacterium sinus F0268] gi|227841940|gb|EEJ52208.1| XRE family transcriptional regulator [Oribacterium sinus F0268] Length = 99 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +A+ E I + + RK++ +TQKE+ TG AQ IS+LE G + +I + LA Sbjct: 23 EALQPE-HIVIQAMIDARKKSGMTQKELAEITGIAQGDISKLERGSANPSIRTLQRLAKG 81 Query: 73 LDTPLWKLLKP 83 + L P Sbjct: 82 MGMILKIEFTP 92 >gi|262201424|ref|YP_003272632.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084771|gb|ACY20739.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + + + R A L+ E+ R G +S +S+LE+G +++ + L+ L Sbjct: 5 KALVAASLKRERTRAGLSIGELARRAGIGKSTLSQLESGDGNPSVETLWALSTALGVQFS 64 Query: 79 KLL 81 LL Sbjct: 65 ALL 67 >gi|254488763|ref|ZP_05101968.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214045632|gb|EEB86270.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 207 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ N+ G A+S +S++E G+ + D + LA L+ + +L Sbjct: 27 LGARVRELRKARSWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLAVGLEISVPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|167461940|ref|ZP_02327029.1| Immunity repressor protein, phage-related protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 81 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 M F + R++RK T +E+ +R+G + ++IS+LE G + + ++ L+ L+ Sbjct: 18 MYFYDKLRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRGIPSPEVLMKLSEGLNISYE 77 Query: 79 KLLK 82 +L++ Sbjct: 78 ELME 81 >gi|116510849|ref|YP_808065.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106503|gb|ABJ71643.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N + R LTQ+E+ F++ IS E+ K+ N++ +I LA D+ L Sbjct: 1 MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNLETLIALAELYDSDL 57 >gi|94968170|ref|YP_590218.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550220|gb|ABF40144.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 74 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + TQ ++ + IS++E GK + + I+A LDT + +LL Sbjct: 12 VGKRIRALRIQKGWTQTDMAVYLDINRGHISDIERGKREAGLITLQIIARGLDTTMARLL 71 Query: 82 K 82 K Sbjct: 72 K 72 >gi|116049838|ref|YP_791355.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585059|gb|ABJ11074.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RKE +LT ++ R +++ IS +E +S+ + LA L L + Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|319780300|ref|YP_004139776.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166188|gb|ADV09726.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 193 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ L+ +E+ R G + ++S++E ++T ++ + L L + + Sbjct: 11 GVKLRHARQVLGLSLEELGARIGLTEGYLSKIENDRATPSMAALHRLVQALGINMNAMF 69 >gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1087] gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|302525493|ref|ZP_07277835.1| predicted protein [Streptomyces sp. AA4] gi|302434388|gb|EFL06204.1| predicted protein [Streptomyces sp. AA4] Length = 442 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTP 76 +++ R+ L+Q + + G + W+S++E G+ I +D + +A L Sbjct: 36 DQLSIGERIAFYRRRRGLSQAVLADLVGRTEDWLSKIERGERDIRRLDVLAEVAQALRVT 95 Query: 77 LWKLL 81 L LL Sbjct: 96 LGDLL 100 >gi|291166792|gb|EFE28838.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 172 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R +LTQ+E+ R + +IS++E ++ +I ++ + L T L Sbjct: 4 GEKIKRLRILNQLTQEELALRCDLTKGFISKVERNLTSPSISTLMDILEVLGTDL 58 >gi|260426660|ref|ZP_05780639.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421152|gb|EEX14403.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 215 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + E + R +RKE T ++ + G A+S +S++E G+ + D + LA L Sbjct: 28 AMAEPLDLGARVRELRKERDWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAVGLG 87 Query: 75 TPLWKLLKP 83 + +L P Sbjct: 88 IGVPQLFTP 96 >gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176] gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176] Length = 82 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 L+ I RM + R E +TQ + G ++ I+ +E G+ I+ + Sbjct: 8 QLASEIKEARMAKNLKLKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINLCKSI 67 Query: 70 AHTLDTPLWKLL 81 LD L L Sbjct: 68 CKALDKTLDDLF 79 >gi|312144436|ref|YP_003995882.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905087|gb|ADQ15528.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] Length = 178 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RN RK ++ ++ + S++S++E G + +I + +A L+ P++ Sbjct: 1 MLGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYF 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|313106352|ref|ZP_07792591.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310879093|gb|EFQ37687.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M + L + R ++ N R +R +A L+Q+ + ++ + +E+G Sbjct: 1 MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 60 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 +++ + +A L L++ Sbjct: 61 VNVSLSTLDRIAAALGVLFPDLVQ 84 >gi|260886811|ref|ZP_05898074.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330839382|ref|YP_004413962.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863410|gb|EEX77910.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329747146|gb|AEC00503.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 82 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAH 71 D RE I RK L+Q+E G ++S++S++E G I+ ++ +A Sbjct: 8 DGFQREFRILGQRIAYYRKLQGLSQEEFSKDVGISKSYLSKIERGDIQGISFVTVMEIAR 67 Query: 72 TLDTPLWKLL 81 +L+ + KLL Sbjct: 68 SLEAKVTKLL 77 >gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A+++ + +G + S +S +E G + +++ + +A L P+ + Sbjct: 7 GAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVPVSRFF 65 >gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 99 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N RN R L++KE+ + +Q IS E G ST++I+N++IL + L+ P + Sbjct: 8 GNFIRNARVSKGLSEKELASLISVSQQQISRYERGISTLSIENILILLNALNIPFDE 64 >gi|167912242|ref|ZP_02499333.1| DNA-binding protein [Burkholderia pseudomallei 112] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|126737596|ref|ZP_01753326.1| transcriptional regulator, XRE family with cupin sensor domain [Roseobacter sp. SK209-2-6] gi|126720989|gb|EBA17693.1| transcriptional regulator, XRE family with cupin sensor domain [Roseobacter sp. SK209-2-6] Length = 199 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R A LT E+ + + + IS++E G+ + ++ ++ LA Sbjct: 12 PPLDHLIGAAVKAHRVLAGLTLAELSAKAKVSPAMISKIERGQVSASLSSLEALAQATGV 71 Query: 76 PLWKLL 81 PL Sbjct: 72 PLINFF 77 >gi|126438464|ref|YP_001060149.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126217957|gb|ABN81463.1| DNA-binding protein [Burkholderia pseudomallei 668] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|317125042|ref|YP_004099154.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Intrasporangium calvum DSM 43043] gi|315589130|gb|ADU48427.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Intrasporangium calvum DSM 43043] Length = 509 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ R+ +TQ E+ G +Q ++ +E GK +++D + + LD+ Sbjct: 13 IRDARRHKAMTQAELAELLGTSQGAVTRIEAGKQNLSLDMLAKIGDALDSE 63 >gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 182 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +LT + R + ++S++E G ++ ++ +++ L LD P+ + Sbjct: 4 EQIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLTSPSVGSLLRLCEVLDLPVGE 63 Query: 80 LL 81 L Sbjct: 64 LF 65 >gi|121607191|ref|YP_994998.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551831|gb|ABM55980.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 229 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L +++ G + S +S+LE G +I++ + LA L P+ L+ Sbjct: 46 LGEQLRRRRQALGLPLQQVARACGISVSLLSQLERGLRSISMRTLGALAQELRLPIETLV 105 Query: 82 K 82 + Sbjct: 106 R 106 >gi|284043477|ref|YP_003393817.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947698|gb|ADB50442.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 93 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRR + + E + R +R LTQ+ + + ++++ +E G+ Sbjct: 1 MPRRTKPAR---PPLGPEYVTLGGAVREVRARRSLTQEGLGRESALHRNYVGAIERGEIN 57 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + LA L PL +L+ Sbjct: 58 PTFRILRKLATGLHLPLSELV 78 >gi|261342972|ref|ZP_05970830.1| hypothetical protein ENTCAN_09574 [Enterobacter cancerogenus ATCC 35316] gi|288314723|gb|EFC53661.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 182 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R + EI R G A+S +S+LE+G +++ + L LD P +L Sbjct: 7 VIAKSLVRERLRTGHSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|114769447|ref|ZP_01447073.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114550364|gb|EAU53245.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 206 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 16 LRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 RE+++ ++ R++ +T ++ TG + +S++E G ++ +++ + LA Sbjct: 13 PREKVLELAIGREVKSHRRQRSMTVADLAASTGLSIGMLSKIENGNTSASLNTLQTLADA 72 Query: 73 LDTPLWKLLK 82 L P+ L + Sbjct: 73 LMIPITSLFR 82 >gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 200 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 14 LVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 73 Query: 81 LK 82 ++ Sbjct: 74 VE 75 >gi|332653437|ref|ZP_08419182.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518583|gb|EGJ48186.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 193 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R R+ KLT TG ++S ++++E G+ I + +A+ L Sbjct: 18 LVAKNARQAREAKKLTLDGAAAATGVSRSMLAQIEKGEVNPTISVLWKIANGYKVSFTSL 77 Query: 81 LK 82 ++ Sbjct: 78 VE 79 >gi|309798658|ref|ZP_07692925.1| transcription regulator [Streptococcus infantis SK1302] gi|308117704|gb|EFO55113.1| transcription regulator [Streptococcus infantis SK1302] Length = 102 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R KLTQ+E+ ++ + +I+ +E + +++D ++ + +D + Sbjct: 4 GELVREYRLSKKLTQQELAEKSDLSLPFINLIENNRRNLSVDTLLKILSAMDINPSDFFR 63 Query: 83 P 83 P Sbjct: 64 P 64 >gi|325678958|ref|ZP_08158556.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109462|gb|EGC03680.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 181 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R E LTQ E+ RTG ++S+IS+ +GK D + LA L T LL Sbjct: 4 FAENLRAAMAERSLTQAELSKRTGISKSFISQYLSGKFKPRDDKLSALAQALGTTKGALL 63 >gi|126452632|ref|YP_001067412.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242317409|ref|ZP_04816425.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|126226274|gb|ABN89814.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242140648|gb|EES27050.1| DNA-binding protein [Burkholderia pseudomallei 1106b] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 151 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R + +Q+E+ + G Q+ S+ E GKS N + + +A L L Sbjct: 89 FSVRLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSKPNYEKLEKIADFFGVSLDWLF 148 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N+RK+ L Q+E+ + ++ E GKS N + + +LA D + LL Sbjct: 4 FHEKLKNLRKKRGLIQQEVAELLNVERVAYTKWENGKSKPNYEKLSMLACIFDVSIDYLL 63 >gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 176 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +TQ+++ + G + +S ETG + ++D +I L+ L K+L Sbjct: 7 GKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSNMPDLDVLIELSDFYAVDLRKIL 65 >gi|153954623|ref|YP_001395388.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855101|ref|YP_002472223.1| hypothetical protein CKR_1758 [Clostridium kluyveri NBRC 12016] gi|146347481|gb|EDK34017.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568825|dbj|BAH06809.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 171 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R+E +TQ+E+ + + IS +ETG+ + DN+ I+ LD P Sbjct: 1 MIGTAIKEAREEKGMTQQELGQMSFLSDKTISAIETGRRNLTKDNLRIICKELDNP 56 >gi|120436979|ref|YP_862665.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117579129|emb|CAL67598.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 252 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N R IR L+Q+ + + E G+S I+ +I +A+ P+ + Sbjct: 3 LFGKNIRKIRSVKSLSQQSFAEIFDLKRGTLGAYEEGRSEPKIETIIKIANHFSIPIGDI 62 Query: 81 LK 82 L Sbjct: 63 LT 64 >gi|325300213|ref|YP_004260130.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319766|gb|ADY37657.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 101 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ER F + RK+ K+TQ E+ + G +S+IS +E G I Sbjct: 21 KPGTPEREEFRKEAYAYCMGQIICDARKKEKMTQSELAEKIGTNKSYISRIEKGIVDPGI 80 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + L + +++KP Sbjct: 81 STFCRIIDALGLKI-EIVKP 99 >gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|309811507|ref|ZP_07705289.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] gi|308434558|gb|EFP58408.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] Length = 512 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + + R++R+ A+ T ++ G + S +S +E GK + + LA Sbjct: 33 PERAAPDALTIGRRLRHVRQGAERTLGDVAAAVGMSPSALSLIENGKREPRLSVLTSLAE 92 Query: 72 TLDTPLWKLL 81 LD PL LL Sbjct: 93 VLDVPLADLL 102 >gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] Length = 508 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK+ +TQ ++ +QS I +E+G ++++ + +A L++P+ Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|160946034|ref|ZP_02093260.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] gi|158443765|gb|EDP20770.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] Length = 95 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R AKL+Q+++ + G + + +LE G S ++ +I +A + LL Sbjct: 9 GNRIFTLRTNAKLSQEKLAEKLGVSHRHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67 >gi|160914340|ref|ZP_02076559.1| hypothetical protein EUBDOL_00348 [Eubacterium dolichum DSM 3991] gi|158433813|gb|EDP12102.1| hypothetical protein EUBDOL_00348 [Eubacterium dolichum DSM 3991] Length = 105 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E + + E+ + ++ ++ETGK + I + +A L + +L+ Sbjct: 38 LGIRIAKLRSEKNMARAELARQCDLHVQYLFDVETGKRNMTIYVLCKIARALGISVSELV 97 Query: 82 K 82 K Sbjct: 98 K 98 >gi|154504728|ref|ZP_02041466.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] gi|153794902|gb|EDN77322.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] Length = 117 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + +TQ+E+ + A S IS LE G + ++ +I + + L+ + LL Sbjct: 12 LGERLKEARIKKHMTQEELSEKIDSATSSISHLENGTHSPSLKTLIKICNVLEIGIDALL 71 >gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ +RK LTQ ++ R G Q I E G+ + + LA L LL Sbjct: 17 YLERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQREPKFEQLFRLAEILGVDASALL 76 >gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 101 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + +R++ LTQ + +G +QS ISE+E+G ++ + + L + Sbjct: 1 MTLGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESGDKEPTTGTLMKICSAMGLTLAE 60 Query: 80 LLK 82 Sbjct: 61 FFT 63 >gi|15644083|ref|NP_229132.1| LacI family transcriptional regulator [Thermotoga maritima MSB8] gi|4981889|gb|AAD36402.1|AE001787_7 lacI family transcriptional regulator, putative [Thermotoga maritima MSB8] Length = 111 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK LTQK++ + G +QS +S++ETG+ I+I + + L Sbjct: 20 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 71 >gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens DSM 2228] Length = 375 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +NIR + L+QK++ G+A++ IS E ++ + +A + + LL Sbjct: 4 FYKRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNIRIPSLQTITEIADYFNVSVDYLL 63 >gi|295115097|emb|CBL35944.1| Predicted transcriptional regulators [butyrate-producing bacterium SM4/1] Length = 107 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ+ + G A S++SE+E ++ + + + L TL+ L L+ Sbjct: 8 LGYRLKAARENRHLTQERLAEMVGIAASYLSEIENKRTVPSFNVLSSLCQTLNVSLDDLI 67 >gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC 43969] Length = 279 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + NN + +R + +TQ+E+ G +Q I +ETGK ++ + L PL Sbjct: 16 MVQNNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAARLEVAQAICSVLKKPL 72 >gi|183598410|ref|ZP_02959903.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC 25827] gi|188020589|gb|EDU58629.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC 25827] Length = 104 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L + I +N R+ L+ E+ + +Q +S +E G ++++ + +A++LD Sbjct: 5 LSPKEIVGSNIHKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQIANSLDI 64 Query: 76 PLWKLL 81 + LL Sbjct: 65 DINCLL 70 >gi|153008229|ref|YP_001369444.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560117|gb|ABS13615.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 110 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RMI N + R ++ K + + G + +++S++E G ++D M +A L Sbjct: 45 VNRMIDGENKIKVWRDYRGMSAKALADAAGISAAYLSQIEKGLREGSLDAMKKIAEALKV 104 Query: 76 PLWKL 80 + +L Sbjct: 105 TIDEL 109 >gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 206 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ E+ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 24 LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 83 >gi|27379415|ref|NP_770944.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352566|dbj|BAC49569.1| blr4304 [Bradyrhizobium japonicum USDA 110] Length = 226 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LT K++ RTG A S +S++E G ++ D ++ L L + +L Sbjct: 14 LGQCLKAARQARGLTLKQVAERTGMALSTLSKVENGLMSLTYDKLLQLTSGLKMEIAELF 73 Query: 82 KP 83 P Sbjct: 74 NP 75 >gi|322377114|ref|ZP_08051606.1| DNA-binding protein [Streptococcus sp. M334] gi|321281827|gb|EFX58835.1| DNA-binding protein [Streptococcus sp. M334] Length = 106 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 35/67 (52%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ + ++ R + KLTQ+E+ R+ + +++ +E K ++++ ++ + L+ Sbjct: 3 VKKLSIGSQIKSYRIKLKLTQQELAERSELSLPFMNLVENDKRNLSVETLLKILDGLEIS 62 Query: 77 LWKLLKP 83 + P Sbjct: 63 PSEFFLP 69 >gi|304385449|ref|ZP_07367794.1| transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328656|gb|EFL95877.1| transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 114 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 + +RKE+ LTQ+E+ ++ + ++IS +E + I+ N+ +A L +LL Sbjct: 8 GKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQNISWKNIEAIAEALGLSTIELL 67 Query: 82 K 82 + Sbjct: 68 Q 68 >gi|317129456|ref|YP_004095738.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474404|gb|ADU31007.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 239 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76 E F +++R E LT +E+ R+G + S+IS++E+G+ + D + LA L Sbjct: 2 EPKEFGLYLKSLRIEKNLTMRELDKRSGVSHSYISKMESGQKGIPSPDILRKLAEPLSVR 61 Query: 77 LWKLL 81 KL+ Sbjct: 62 YQKLM 66 >gi|295675501|ref|YP_003604025.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295435344|gb|ADG14514.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R R E ++Q+E+ + G ++ IS LE ++ LA LD + Sbjct: 11 RERFARNLRAYRIELGMSQEELGSYIGADRTAISRLERTFGNPTLERAEALASALDIDVR 70 Query: 79 KLLK 82 L+ Sbjct: 71 VLMT 74 Score = 43.8 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTI-NIDNMIILAHTLDTPLW 78 +R++ LTQK++ G +++IS +E G+ T + + LA Sbjct: 95 VGAKVATLREKMGLTQKQLGELAGVDRNFISRVEAPHGRGTPLELATLEKLAEAFGIHPV 154 Query: 79 KLL 81 +LL Sbjct: 155 ELL 157 >gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 174 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ LT + + +TG +S++S++E +ST +I + +A LD + +L Sbjct: 5 LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLF 60 >gi|228982712|ref|ZP_04142971.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] gi|228776895|gb|EEM25203.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] Length = 133 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R RK + LTQ+E+ + ++ IS ETG ST +I+ + +L L+ L Sbjct: 28 VFKKRLRLARKWSGLTQEELAIKVNTKKTTISNYETGYSTPSIEMLDLLCDVLNVSSDFL 87 Query: 81 L 81 L Sbjct: 88 L 88 >gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 234 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ LTQ E+ +G Q+ +S++E + ++I+ LA L + L+ Sbjct: 4 GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLSIETWESLASVLGCSVGYLV 62 >gi|255306540|ref|ZP_05350711.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 73 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +R E L QK++ + G S+ +E+G ++ I L+ + K+ Sbjct: 2 NNLKELRTERNLKQKDVALKVGITTSYYGMIESGTRVPSLAIAIKLSKCFGVSIEKIF 59 >gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] Length = 384 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ RK+ L+Q+++ +R ++ +S+ E+ + NID ++ +A L+ L + Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|160939146|ref|ZP_02086497.1| hypothetical protein CLOBOL_04040 [Clostridium bolteae ATCC BAA-613] gi|158438109|gb|EDP15869.1| hypothetical protein CLOBOL_04040 [Clostridium bolteae ATCC BAA-613] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+E+ G + I +E GK ++ + + L L +L Sbjct: 7 KMKAARAGMDLSQEELAELVGVTRQTIGMIEAGKYNPTLNLCLAICKALHKTLDELF 63 >gi|153932210|ref|YP_001385236.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152928254|gb|ABS33754.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] Length = 92 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + +R+E +LTQ+E+ ++ IS E+ ++ +I+N+I LA+ + L L Sbjct: 1 MFGDRLKELREEKQLTQEELGKFLNVSRQAISSYESEETEPSINNLIKLANIFNISLDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|15597081|ref|NP_250575.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107101318|ref|ZP_01365236.1| hypothetical protein PaerPA_01002352 [Pseudomonas aeruginosa PACS2] gi|254240277|ref|ZP_04933599.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] gi|9947875|gb|AAG05273.1|AE004614_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126193655|gb|EAZ57718.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RKE +LT ++ R +++ IS +E +S+ + LA L L + Sbjct: 5 ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|330982062|gb|EGH80165.1| conjugal transfer protein TrbA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 159 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N I E +T+ ++ T + S ISE+ GK + M +A L TPL L Sbjct: 5 IFFTNVLRILGERGMTKHDLAKLTHVSISVISEITNGKGNPTLKTMTAIAEALQTPLPTL 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R + TQKE+ +G ++S I E G + + + +A++L + Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 80 LLKP 83 + P Sbjct: 61 MSDP 64 >gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 196 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 11 LSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + DA +R++ R +R++ T ++ TG + S +S LE G+ N++ ++ Sbjct: 1 MDDADDMDRILDAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLP 60 Query: 69 LAHTLDTPLWKLL 81 LA PL +L+ Sbjct: 61 LARAYGVPLDELV 73 >gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 212 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E + + + G + S +S++ETGKS ++ + + L + L Sbjct: 9 VGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVESLF 68 >gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 180 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++R+E LTQ E+ +R ++ +IS+LE ++ ++ + + L T + Sbjct: 4 GEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLTSPSLSTLEDILEVLGTNIRDFF 62 >gi|226324530|ref|ZP_03800048.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758] gi|225206978|gb|EEG89332.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758] Length = 121 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R +A LTQ + + ++ IS +E G + M+ + LD L+ Sbjct: 11 FGTRVRQARHKAGLTQAALAEKLNLDETTISRIENGSQATSFATMLNFSEALDVKFDYLI 70 >gi|229816663|ref|ZP_04446952.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM 13280] gi|229807791|gb|EEP43604.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM 13280] Length = 90 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H A ER + + R A LTQKE+ +R G + + LE G ++ + + Sbjct: 19 HEWSAQETEREVM-KSIVKARIAAGLTQKELADRCGMKAANLCRLENGNGNPSVATLSKI 77 Query: 70 AHTLDTPL 77 AH L L Sbjct: 78 AHGLGKKL 85 >gi|169346786|ref|ZP_02865737.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297068|gb|EDS79190.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 148 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 33/67 (49%), Gaps = 6/67 (8%) Query: 22 FVNNFRNIRKE------AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R + K TQ ++ G ++S++ ++E+G++ + + ++ L+ L Sbjct: 5 LGLKIKQLRSDYSLKTGKKCTQADLAKMIGISRSYLGDIESGRTNPSDEILLKLSDALGV 64 Query: 76 PLWKLLK 82 L L++ Sbjct: 65 DLDILIE 71 >gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 185 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ L+ E+ +G +++ +S LE+G+ I+ + +A L PL LL Sbjct: 11 VGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGDLL 70 >gi|18309240|ref|NP_561174.1| transcriptional regulator [Clostridium perfringens str. 13] gi|168206624|ref|ZP_02632629.1| conserved domain protein [Clostridium perfringens E str. JGS1987] gi|169343140|ref|ZP_02864165.1| conserved domain protein [Clostridium perfringens C str. JGS1495] gi|18143916|dbj|BAB79964.1| probable transcriptional regulator [Clostridium perfringens str. 13] gi|169298778|gb|EDS80853.1| conserved domain protein [Clostridium perfringens C str. JGS1495] gi|170661993|gb|EDT14676.1| conserved domain protein [Clostridium perfringens E str. JGS1987] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ +I N + R E L+Q+ + + G +++ IS +ETG+ +IL LD Sbjct: 1 MKDELILKNKLKISRVEKGLSQQALADLVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 226 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ AK++ +++ + G + ++S++E G + + + LA L Sbjct: 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRRPSAEVLQQLASALRVS 64 >gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 94 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E LTQK++ +R G A S IS E+ D +I A LL Sbjct: 3 LGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDTRCPTFDTLIKYARIFHVSTDYLL 62 >gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] Length = 167 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + + RK +TQ E+ ++G S I + E+G+ D + +A L Sbjct: 4 RHSIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGIS 61 >gi|170697588|ref|ZP_02888677.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137475|gb|EDT05714.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 80 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 H D +L + R IRKE ++Q+++ S++ +E G + + + Sbjct: 2 PNLSSHRQDPVLVA---LGHAIRRIRKERDMSQEQLALSAEVDMSYLGRVERGDNNVAVL 58 Query: 65 NMIILAHTLDTPLWKLL 81 + +A L + +L+ Sbjct: 59 RLKRIADALGMTMTELM 75 >gi|167720910|ref|ZP_02404146.1| DNA-binding protein [Burkholderia pseudomallei DM98] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|187927559|ref|YP_001898046.1| XRE family transcriptional regulator [Ralstonia pickettii 12J] gi|187724449|gb|ACD25614.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] Length = 81 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RK L+Q+ + + +S + ++E G+ + + N++ +A L +L Sbjct: 16 LIGAAVRARRKAIPLSQEALADLAEIDRSHMGKIERGERNVTMLNVLRIAQALGCQPSEL 75 Query: 81 L 81 L Sbjct: 76 L 76 >gi|159036303|ref|YP_001535556.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915138|gb|ABV96565.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R T +E+ G + ++SE+E G+ + + + + L L Sbjct: 5 RRVIGGVLRRLRVRQGRTLREVAAAAGVSMPYLSEVERGRKEASSEVLAAICRALGIRLS 64 Query: 79 KLL 81 LL Sbjct: 65 DLL 67 >gi|170728343|ref|YP_001762369.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813690|gb|ACA88274.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 68 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RKE ++Q ++ +S+ +E G+ I ++ LA L + +LL Sbjct: 8 FGLKLREKRKELGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCEVRELL 67 >gi|323140527|ref|ZP_08075454.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414979|gb|EFY05771.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 71 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R +L Q + + G ++S++E G + ++D + +A L + LL+ Sbjct: 10 GRKIRYYRIMQELGQGMLAEQIGITPQYLSKIEHGSARPSMDLVFRIADKLQVKVSHLLE 69 >gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 170 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|257791668|ref|YP_003182274.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487866|ref|ZP_07946458.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA] gi|325830662|ref|ZP_08164083.1| putative restriction-modification system control element Bcll [Eggerthella sp. HGA1] gi|257475565|gb|ACV55885.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912992|gb|EFV34509.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA] gi|325487408|gb|EGC89850.1| putative restriction-modification system control element Bcll [Eggerthella sp. HGA1] Length = 78 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++R ++Q+ N+ G +++++ +E G+ + + N+ +A+ D L + Sbjct: 9 VGLRIKDLRAVHDVSQERFANKIGMDRTYLASIEVGQRNVTLQNLAKIANGFDMTLSEFF 68 Query: 82 K 82 + Sbjct: 69 E 69 >gi|161353810|ref|YP_001568987.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|91718802|gb|ABE57126.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 115 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF R ++Q ++ Q IS +E G S + +D L L+ + Sbjct: 30 IFGQLILEKRMSKGISQDDLALMANTTQKTISRVEGGNSNVTMDTYDKLFDALNISPEE 88 >gi|53725534|ref|YP_103601.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643873|ref|ZP_00442616.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76811218|ref|YP_334564.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121600358|ref|YP_992235.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126450800|ref|YP_001081418.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134280073|ref|ZP_01766784.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167000869|ref|ZP_02266674.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167739889|ref|ZP_02412663.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167847008|ref|ZP_02472516.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167895592|ref|ZP_02482994.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|254175429|ref|ZP_04882089.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254191730|ref|ZP_04898233.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254196114|ref|ZP_04902539.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254202294|ref|ZP_04908657.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207627|ref|ZP_04913977.1| DNA-binding protein [Burkholderia mallei JHU] gi|254259704|ref|ZP_04950758.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356472|ref|ZP_04972748.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52428957|gb|AAU49550.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76580671|gb|ABA50146.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121229168|gb|ABM51686.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126243670|gb|ABO06763.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134248080|gb|EBA48163.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|147746541|gb|EDK53618.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751521|gb|EDK58588.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025469|gb|EDK83623.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157939401|gb|EDO95071.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160696473|gb|EDP86443.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169652858|gb|EDS85551.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|238525329|gb|EEP88757.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243063295|gb|EES45481.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254218393|gb|EET07777.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|319892577|ref|YP_004149452.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius HKU10-03] gi|317162273|gb|ADV05816.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius HKU10-03] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N R RK KLTQ E+ +R ++ ISE+E K ++I + +A L + Sbjct: 3 KKKIALNIRAYRKMCKLTQSELASRLKTSRQHISEIECCKRGLSIKMLEKMAKKLQVEPY 62 Query: 79 KLLK 82 +LLK Sbjct: 63 QLLK 66 >gi|312141280|ref|YP_004008616.1| transcriptional regulator [Rhodococcus equi 103S] gi|325673887|ref|ZP_08153577.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890619|emb|CBH49937.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555152|gb|EGD24824.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 215 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 1 MPRRKRDEPHL----------SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW 50 M KR H + ER+I R +R + L+ ++ + G +++ Sbjct: 1 MSPSKRPVHHDTAQREVPADTPTGVDLERVI-ATQVRKLRLASGLSVGDMAAKVGISKAM 59 Query: 51 ISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +S++E +++ ++ + LA LD P+ L + Sbjct: 60 LSKIENAQTSCSLSTLARLAAGLDVPVTSLFR 91 >gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 190 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+++ ++Q+ + +TG S IS +E+GK ++ + + + L + Sbjct: 13 LGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGVPISLSEFF 72 >gi|167825520|ref|ZP_02456991.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|217421247|ref|ZP_03452752.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226193747|ref|ZP_03789349.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|217396659|gb|EEC36676.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225934052|gb|EEH30037.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] Length = 112 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK KLTQ+++ + G + ++ E+E G+ T+++ + +A L T +L Sbjct: 7 GKRIKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGTSTDYIL 65 >gi|197119042|ref|YP_002139469.1| XRE family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088402|gb|ACH39673.1| helix-turn-helix transcriptional response regulator, XRE family [Geobacter bemidjiensis Bem] Length = 233 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R+E L+Q+++ + + +IS LE GK ++ ++ LA L++ Sbjct: 5 EAFGIVIRRLRRERNLSQEKLSTASCLDRKFISNLEGGKQQPSLVSVFALAGALNSTASS 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|190015098|ref|YP_001966668.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|190015364|ref|YP_001966993.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218848302|ref|YP_002455035.1| transcriptional regulator [Bacillus cereus AH820] gi|116584774|gb|ABK00889.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|116585045|gb|ABK01154.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218540353|gb|ACK92749.1| transcriptional regulator [Bacillus cereus AH820] Length = 64 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E +TQ E+ T ++ I +E G+ ++ I + +L L L Sbjct: 4 KVKRIRLEKGMTQGELAKITNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 60 >gi|23012190|ref|ZP_00052337.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1] Length = 303 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R L++K + +G ++ +I++LE+G+ ++I + +A+ + L L+ Sbjct: 19 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLV 78 >gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] Length = 169 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 169 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 99 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 25/56 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 5 LRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGVKPKDFF 60 >gi|317130611|ref|YP_004096893.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475559|gb|ADU32162.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R + +TQ+++ R G + I +E G+ ++ + +A L+ L +L Sbjct: 3 NNVKITRIKMSITQEQLAKRVGVTRQTIGLIEKGEYNPSLQLCVSIAKVLNKTLDELF 60 >gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 230 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N + R E L+ + + +G +++ + ++E G+ST I+ + +A L P L Sbjct: 50 VVASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQSTPTINVLWKIARALGVPFSAL 109 Query: 81 L 81 + Sbjct: 110 M 110 >gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 191 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 11 VGPRLRQVRKEREVTLAALSETTGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 70 >gi|328948325|ref|YP_004365662.1| hypothetical protein Tresu_1463 [Treponema succinifaciens DSM 2489] gi|328448649|gb|AEB14365.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 105 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IRKE +TQ+++ A S+I +ET K+ + + +A L+ L K Sbjct: 10 NIKRIRKEKHITQEQLAEACNTATSYIGLMETYKNVPKLSTIEKIADALNVEPEILFK 67 >gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 170 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|154500049|ref|ZP_02038087.1| hypothetical protein BACCAP_03709 [Bacteroides capillosus ATCC 29799] gi|150271139|gb|EDM98408.1| hypothetical protein BACCAP_03709 [Bacteroides capillosus ATCC 29799] Length = 69 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + R E KL+Q + G +++ IS +ETG+ +IL LD + Sbjct: 5 LILKNRLKEARVEKKLSQAALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEE 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|77405835|ref|ZP_00782918.1| conserved hypothetical protein [Streptococcus agalactiae H36B] gi|77409763|ref|ZP_00786418.1| transcription regulator, probable -related protein [Streptococcus agalactiae COH1] gi|77171623|gb|EAO74837.1| transcription regulator, probable -related protein [Streptococcus agalactiae COH1] gi|77175545|gb|EAO78331.1| conserved hypothetical protein [Streptococcus agalactiae H36B] Length = 79 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L + +I VN R R +A ++Q + G A+ I+ +E K ++D I LA L Sbjct: 7 SLLKELIIVNRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQ 66 Query: 75 TPLWKLL 81 T L L Sbjct: 67 TDLNTLF 73 >gi|99082324|ref|YP_614478.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038604|gb|ABF65216.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 187 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R IR A L+ TG +++ + ++E G+S+ I + +A PL L++ Sbjct: 9 NLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIE 66 >gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 201 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T E+ TG ++S +S LE+G+ ++ ++ LA + PL L+ Sbjct: 12 VGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLELLLPLARVYNVPLDDLV 71 >gi|269129114|ref|YP_003302484.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268314072|gb|ACZ00447.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 187 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + ++ R G ++ + LE G+ N+ +I ++ L PL +L+ Sbjct: 11 VARTVRSLRAGHGWSLDQLAVRAGVSKGVLVALEQGRGNPNLGTLIRISQALGVPLTRLV 70 Query: 82 K 82 + Sbjct: 71 Q 71 >gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 150 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + +R+ Q E+ + ++ +S+ E ++ +I+ +I ++ + + Sbjct: 1 MVFGEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQNYPSIEIIIKISDLFGVTIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 5 KRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 D P + R++R+ + LT + +R G + + +S LETG+ + Sbjct: 12 PTDGPADGHPGGPSAELPTVAPRLRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPS 71 Query: 63 IDNMIILAHTLDTPLWKLL 81 + ++ LA T T + LL Sbjct: 72 LPMLLTLARTYGTTVSDLL 90 >gi|228951504|ref|ZP_04113610.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808211|gb|EEM54724.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 149 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ ++I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYLSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|257125626|ref|YP_003163740.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049565|gb|ACV38749.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L + + RK+ +TQKE+ + TG Q IS++E G + ++ + LA D Sbjct: 24 SLEAEFQIIREIISARKDKNITQKELSDLTGITQGDISKIENGNANPSLKTLKKLAAAFD 83 Query: 75 TPLW 78 L Sbjct: 84 KKLV 87 >gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018] gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 157 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R+ K+TQ+E+ G +++ I E G S I+ + + L+ + Sbjct: 1 MVSVNIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] Length = 508 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK+ +TQ ++ +QS I +E+G ++++ + +A L++P+ Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|187933844|ref|YP_001884286.1| adenine-specific DNA methyltransferase [Clostridium botulinum B str. Eklund 17B] gi|187721997|gb|ACD23218.1| adenine-specific DNA methyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 194 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 25/50 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + RK ++Q+E+ RTG + IS++E + +++ + +A Sbjct: 1 MVGEKVAKFRKILGISQRELGRRTGLSGQMISKIENNLTNPSLETLGKIA 50 >gi|110004082|emb|CAK98421.1| conserved hypothetical transcriptional regulator transcription regulator protein [Spiroplasma citri] Length = 177 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + +R++ LT +E+ NR + +IS+LE S+ +I+ + + L T L Sbjct: 1 MLLGEKIKLLRQKNNLTIEELANRCELTKGFISQLERDISSPSIETLESILEVLGTNLAD 60 Query: 80 LLK 82 K Sbjct: 61 FFK 63 >gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] Length = 191 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A E + +R E LT +++ G ++S +S++E K+ I LA+ L Sbjct: 8 ATPPE---VGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKANPTIAVAWRLANAL 64 Query: 74 DTPLWKLL 81 + +LL Sbjct: 65 GVSIAELL 72 >gi|227545281|ref|ZP_03975330.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908647|ref|ZP_07126110.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184750|gb|EEI64821.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894054|gb|EFK87412.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 161 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R + L+Q++I + + +S E G S +++ + LA D L L+ Sbjct: 19 FAKQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAFFDVSLDWLV 78 >gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] Length = 365 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M F +N ++R +TQ+++ G ++ IS+ E+GK+ +D ++I+ L Sbjct: 15 EIMTFSDNLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKAYPEMDKLLIICDLFTVSL 74 Query: 78 WKLL 81 L+ Sbjct: 75 DDLV 78 >gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] Length = 120 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I+R + R R+ LTQ + G + +I +E G + + LA TL Sbjct: 12 IVRLQKSVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALARTLK 71 Query: 75 TPLWKLL 81 TP+ Sbjct: 72 TPVRDFF 78 >gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 340 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + RK+ KLTQ ++ R ++S IS E G +I +I LA+ ++ + L Sbjct: 5 VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64 Query: 81 L 81 Sbjct: 65 F 65 >gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] Length = 451 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RK++ PH+ + ++R+E +TQKE+ + G + +S+ E G+S I Sbjct: 28 RKKEVPHMDSIRT------GSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEI 81 Query: 64 DNMIILAHTLDTPLWKLL 81 L TL +L+ Sbjct: 82 TLFPALGATLGVTADELM 99 >gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 104 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 26/57 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R RK A LTQ ++ RTGF IS ET T +ID ++ A L Sbjct: 3 RSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGV 59 >gi|325529272|gb|EGD06223.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ R G IS +E G+ + ++ ++ L + L + Sbjct: 5 VAERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 206 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ LTQ+++ + +++ +S+ E+G+ NI+++ ++ + + +LL Sbjct: 3 FNEKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRGYPNIESLKCISKLFEVTIDELL 62 >gi|310639543|ref|YP_003944301.1| transcription regulator [Paenibacillus polymyxa SC2] gi|309244493|gb|ADO54060.1| Transcription regulator [Paenibacillus polymyxa SC2] Length = 66 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+E+ NRTG + + + +E G T+ D + I+A TL+ + Sbjct: 2 ENLQLAQRLRAFRKLKGFTQQELANRTGISLTVLGAVERGNRTVEADMLNIIAQTLEIEV 61 Query: 78 WKL 80 +L Sbjct: 62 REL 64 >gi|302330170|gb|ADL20364.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis 1002] Length = 155 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78 R +RK L+Q + + +++ IS LE +++ + + LA L P Sbjct: 28 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 87 Query: 79 KLL 81 LL Sbjct: 88 VLL 90 >gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM 20476] gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 436 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N ++RK+A LTQ E+ G +S+ E GKS +++++ L+ + +LL Sbjct: 6 FGNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSKPSVESVRKLSGLFHVSVDELL 65 Query: 82 K 82 + Sbjct: 66 R 66 >gi|167851665|ref|ZP_02477173.1| Transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] Length = 72 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+A LTQ ++ + G QS++S++E G+ +++ + +TP +++ Sbjct: 14 LKQVRKDAGLTQVQLAEKLGRGQSYVSKVERGEQYLDVLEFVEWCEACNTPPERVI 69 >gi|167588868|ref|ZP_02381256.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 177 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R++ KLT G ++ ++S++E G++ +I +++ +A L + + Sbjct: 2 GNRIRTLRRQLKLTLDVTAASAGISKPFLSQIERGRAMPSIASLVGIARALGVTIDHFV 60 >gi|111220943|ref|YP_711737.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111148475|emb|CAJ60147.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 498 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILA 70 + R R+ LTQ+++ +R GF QS++S++E+G+ I +I + +A Sbjct: 10 PPRATPASVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIA 69 Query: 71 HTLDTPLWKL 80 L + Sbjct: 70 RNLALSPEDV 79 >gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] Length = 294 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IRK+ L+Q++ + G ++ I++ ET +IDN+I + D + +LL Sbjct: 3 FSQKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDELL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|126699343|ref|YP_001088240.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100870|ref|ZP_05329847.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306758|ref|ZP_05350929.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250780|emb|CAJ68604.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 181 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ L+ +++ S +S++E G + +++++ +A +L+ PL+ Sbjct: 6 LGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTFF 65 >gi|330465580|ref|YP_004403323.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328808551|gb|AEB42723.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 278 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R+ LT +E+ G + ++SE+E G+ + + + + L L Sbjct: 5 RRVIGVVLRRERQRQGLTLREVARAAGVSVPYLSEVERGRKEASSEVLAAVCRALGLYLS 64 Query: 79 KLLK 82 LL+ Sbjct: 65 DLLE 68 >gi|323139594|ref|ZP_08074638.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] gi|322395144|gb|EFX97701.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] Length = 205 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ E+ ++G A+S IS++E ++ + + LA LD + ++L Sbjct: 23 LGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETNPTLATIWRLAQALDVSIERVL 82 Query: 82 K 82 + Sbjct: 83 Q 83 >gi|322384169|ref|ZP_08057879.1| transcriptional repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151061|gb|EFX44378.1| transcriptional repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 139 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 M F + R++RK T +E+ +R+G + ++IS+LE G + + ++ L+ L+ Sbjct: 1 MYFYDKLRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRGIPSPEVLMKLSEGLNISYE 60 Query: 79 KLLK 82 +L++ Sbjct: 61 ELME 64 >gi|291540886|emb|CBL13997.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 118 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|289432065|ref|YP_003461938.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|288945785|gb|ADC73482.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 131 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R E +L+ +E+ ++G + S++ +E G+ D + LA D P+ L Sbjct: 5 FGEYLRTLRVEKRLSLREVEQQSGVSNSYLGLIERGQRPIPGADILKKLAPVYDVPVRDL 64 Query: 81 LK 82 LK Sbjct: 65 LK 66 >gi|219871153|ref|YP_002475528.1| transcriptional regulator [Haemophilus parasuis SH0165] gi|219691357|gb|ACL32580.1| transcriptional regulator [Haemophilus parasuis SH0165] Length = 91 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +Q+ + N ++++S +E + +++ N+ LA L P W+LLK Sbjct: 2 QKGWSQERLENECELDRTYVSAVEHCRWNVSLSNIEKLATALSCPAWQLLK 52 >gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter bemidjiensis Bem] gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing protein [Geobacter bemidjiensis Bem] Length = 181 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R + +IS+LE ++ +I + + + + Sbjct: 4 GERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQEFF 62 >gi|83644480|ref|YP_432915.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632523|gb|ABC28490.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 192 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D L R+ + +RK KLT +++ ++ ++S +S++E G++ + L Sbjct: 3 DTDLVARL--GKRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPTFATLWNLTRA 60 Query: 73 LDTPLWKLL 81 + +L+ Sbjct: 61 MGIEWSELV 69 >gi|299139477|ref|ZP_07032651.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298598405|gb|EFI54569.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 188 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R++R L+Q+++ R +++IS++E GK+ + ++ LA L + Sbjct: 73 LQVASAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALQVDISA 132 Query: 80 LLK 82 LL+ Sbjct: 133 LLR 135 >gi|288561200|ref|YP_003424686.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543910|gb|ADC47794.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 108 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK+ TQ+++ + G QS +S++E G+ N+ + L + L Sbjct: 4 VVAKNLKDLRKKNGYTQEQVSDYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYL 63 Query: 81 L 81 + Sbjct: 64 I 64 >gi|187777853|ref|ZP_02994326.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC 15579] gi|187774781|gb|EDU38583.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC 15579] Length = 140 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 F F+NIR E L+Q+++ + + + IS +E+G + + + + LA L +L Sbjct: 3 FGEFFKNIRTEKGLSQRQLAELSHISNTEISRIESGERRNPSPNTLKSLAPHLGISYGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|182677117|ref|YP_001831263.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633000|gb|ACB93774.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 205 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ E+ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 23 LGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 82 Query: 82 K 82 + Sbjct: 83 Q 83 >gi|167903989|ref|ZP_02491194.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 195 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|220922764|ref|YP_002498066.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947371|gb|ACL57763.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium nodulans ORS 2060] Length = 338 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +++K + +G ++ +I++LETG+ ++I + +A+ + L L+ Sbjct: 49 LGQRVRTARAVRAMSRKVLSQTSGLSERYIAQLETGQGNVSIILLRRVANAMGVRLEDLI 108 Query: 82 KP 83 P Sbjct: 109 AP 110 >gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 203 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P + +R E KLT ++ G ++S +SE+E K+ I Sbjct: 14 AAPQSPGVTPPR---VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVA 70 Query: 67 IILAHTLDTPLWKLL 81 L + L L +L Sbjct: 71 WRLTNALGITLDELF 85 >gi|254975373|ref|ZP_05271845.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092763|ref|ZP_05322241.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314502|ref|ZP_05356085.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517179|ref|ZP_05384855.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650283|ref|ZP_05397185.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683399|ref|YP_003214684.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686995|ref|YP_003218128.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520257|ref|ZP_07406604.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260209562|emb|CBA63177.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213011|emb|CBE04338.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 181 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ L+ +++ S +S++E G + +++++ +A +L+ PL+ Sbjct: 6 LGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTFF 65 >gi|125622888|ref|YP_001031371.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|2909717|gb|AAC12967.1| unknown [Lactococcus lactis subsp. cremoris MG1363] gi|124491696|emb|CAL96615.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069626|gb|ADJ59026.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N + R LTQ+E+ F++ IS E+ K+ N + +I LA D+ L Sbjct: 1 MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALADLYDSDL 57 >gi|15601046|ref|NP_232676.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121728097|ref|ZP_01681134.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|147672473|ref|YP_001215786.1| transcriptional regulator [Vibrio cholerae O395] gi|153819592|ref|ZP_01972259.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|153824257|ref|ZP_01976924.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|229506566|ref|ZP_04396075.1| hypothetical protein VCF_001785 [Vibrio cholerae BX 330286] gi|229510638|ref|ZP_04400118.1| hypothetical protein VCE_002046 [Vibrio cholerae B33] gi|229517231|ref|ZP_04406676.1| hypothetical protein VCC_001252 [Vibrio cholerae RC9] gi|229522958|ref|ZP_04412372.1| hypothetical protein VIF_003528 [Vibrio cholerae TM 11079-80] gi|229606045|ref|YP_002876749.1| hypothetical protein VCD_000995 [Vibrio cholerae MJ-1236] gi|254850521|ref|ZP_05239871.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745921|ref|ZP_05419868.1| predicted transcriptional regulator [Vibrio cholera CIRS 101] gi|262163521|ref|ZP_06031267.1| predicted transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|262168221|ref|ZP_06035919.1| predicted transcriptional regulator [Vibrio cholerae RC27] gi|298500125|ref|ZP_07009931.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657676|gb|AAF96189.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629645|gb|EAX62066.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|126509874|gb|EAZ72468.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|126518220|gb|EAZ75445.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|146314856|gb|ABQ19396.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|227014947|gb|ACP11156.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|229340175|gb|EEO05183.1| hypothetical protein VIF_003528 [Vibrio cholerae TM 11079-80] gi|229345267|gb|EEO10240.1| hypothetical protein VCC_001252 [Vibrio cholerae RC9] gi|229353083|gb|EEO18023.1| hypothetical protein VCE_002046 [Vibrio cholerae B33] gi|229356917|gb|EEO21835.1| hypothetical protein VCF_001785 [Vibrio cholerae BX 330286] gi|229372531|gb|ACQ62953.1| hypothetical protein VCD_000995 [Vibrio cholerae MJ-1236] gi|254846226|gb|EET24640.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735675|gb|EET91073.1| predicted transcriptional regulator [Vibrio cholera CIRS 101] gi|262023464|gb|EEY42167.1| predicted transcriptional regulator [Vibrio cholerae RC27] gi|262028088|gb|EEY46747.1| predicted transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|297542106|gb|EFH78157.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 207 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIEM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 477 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ R +R+ LTQ R G + S+++++E + ++ ++ LA + Sbjct: 1 MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSV 60 Query: 76 PLWK 79 L + Sbjct: 61 DLSE 64 >gi|170760185|ref|YP_001785975.1| cupin domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169407174|gb|ACA55585.1| cupin domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 183 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R E L+ ++ + ++ +S++E + I+ + +A+ L P L Sbjct: 6 IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKSDTNPTINTLWKIANGLKVPYTLL 65 Query: 81 LK 82 L+ Sbjct: 66 LE 67 >gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571] gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ ++ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 49 LGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDVTVERVL 108 >gi|160894971|ref|ZP_02075745.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] gi|156863402|gb|EDO56833.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] Length = 118 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|154506035|ref|ZP_02042773.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] gi|153793534|gb|EDN75954.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] Length = 122 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK TQ+EI + ++ S ET K T ++D+++ LA L +L+ Sbjct: 8 ENLYRLRKAHHYTQQEISDLLNISRQAYSNYETSKRTPDLDSLMRLADIYGVSLDQLV 65 >gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IR ++ LTQ E+ ++ G + E+G+S +D M LA DT + L+ Sbjct: 5 FSTRLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVADLM 64 >gi|326330669|ref|ZP_08196973.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] gi|325951510|gb|EGD43546.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] Length = 184 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R+ A +T + +G +++ IS++E G++ + L+ L+ L +L+ Sbjct: 6 LAANIRSAREAAGMTVAALAEASGVSRAMISKIERGEAQPTAVLLARLSGALELTLSELI 65 >gi|317497294|ref|ZP_07955617.1| hypothetical protein HMPREF0996_00597 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895363|gb|EFV17522.1| hypothetical protein HMPREF0996_00597 [Lachnospiraceae bacterium 5_1_63FAA] Length = 55 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 F R +R++ L+Q++ G +++ S +E+GK I++ N+ Sbjct: 9 FGQRIRELRQKTGLSQEKFALMIGMDRTYFSSVESGKRNISLLNIKK 55 >gi|326793247|ref|YP_004311068.1| hypothetical protein Clole_4198 [Clostridium lentocellum DSM 5427] gi|326544011|gb|ADZ85870.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 143 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +RK TQ+EI R + IS+ E G S + D +I +A D + +L Sbjct: 1 MFSENLKALRKTKGFTQEEIAIRLNVVRQTISKWEKGLSIPDADILIKIAALFDVSVSEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|284045004|ref|YP_003395344.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949225|gb|ADB51969.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 196 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R+ L+ +++ R+G + +S++E G+++ + +AH LD L +LL+ Sbjct: 13 GSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGETSPTLQVATRIAHGLDLRLSQLLR 72 >gi|282879243|ref|ZP_06287993.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] gi|281298636|gb|EFA91055.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] Length = 112 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PRR E ++ +I ++ + R E LTQ+E+ R G ++ IS LE G S I Sbjct: 26 PRRDEFEQRVAASIHAYKL--GEAIKKARIEQNLTQEELGERIGVKRAQISRLEKGYS-I 82 Query: 62 NIDNMIILAHTLDTP 76 +I M + L P Sbjct: 83 SIPTMSRVFKALGVP 97 >gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 I ++IR+ L+Q ++ G++ S I E G+ I+ D+ ++++ L Sbjct: 6 EIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVSPA 65 Query: 79 KLL 81 +L+ Sbjct: 66 ELM 68 >gi|183980823|ref|YP_001849114.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174149|gb|ACC39259.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 138 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP ++ +S + I + R R+ A ++ +++ R+G + ++S++E G Sbjct: 1 MPGEEKLGAKVSAVSSKASDI-GSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK 59 Query: 61 INIDNMIILAHTLDTPLWKL 80 + D + +A L L Sbjct: 60 PSADVLAQIAKALRVSAEVL 79 >gi|146306212|ref|YP_001186677.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145574413|gb|ABP83945.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 81 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + L+Q+ + + G +S + ++E G+ + N+ +A L LL Sbjct: 17 LGKAVRARRAQQALSQEALADAAGIDRSHMGKIERGERNVTFLNIARIASALGCKPSDLL 76 >gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I [Pyrococcus furiosus DSM 3638] Length = 187 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ R I + R IRKE +TQ+E+ + G Q++I++LE GK + + L Sbjct: 2 VIIPRPIDPRDIRRIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNKILRAL 60 >gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 107 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 207 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 + +R +TQ ++ + +G + +IS LE KST + + + +A L Sbjct: 6 GLKVKQLRIARGMTQAKLADASGLTRGYISMLELRKSTMPSYEALSKIARALGV 59 >gi|47095311|ref|ZP_00232922.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|217965156|ref|YP_002350834.1| hypothetical protein LMHCC_1879 [Listeria monocytogenes HCC23] gi|224499618|ref|ZP_03667967.1| hypothetical protein LmonF1_07939 [Listeria monocytogenes Finland 1988] gi|254828832|ref|ZP_05233519.1| transcriptional regulator [Listeria monocytogenes FSL N3-165] gi|254830262|ref|ZP_05234917.1| hypothetical protein Lmon1_02837 [Listeria monocytogenes 10403S] gi|254900016|ref|ZP_05259940.1| hypothetical protein LmonJ_09385 [Listeria monocytogenes J0161] gi|254911432|ref|ZP_05261444.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935757|ref|ZP_05267454.1| transcriptional regulator [Listeria monocytogenes F6900] gi|255026248|ref|ZP_05298234.1| hypothetical protein LmonocytFSL_07720 [Listeria monocytogenes FSL J2-003] gi|284801080|ref|YP_003412945.1| hypothetical protein LM5578_0829 [Listeria monocytogenes 08-5578] gi|284994222|ref|YP_003415990.1| hypothetical protein LM5923_0784 [Listeria monocytogenes 08-5923] gi|47016382|gb|EAL07304.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|217334426|gb|ACK40220.1| conserved domain protein [Listeria monocytogenes HCC23] gi|258601245|gb|EEW14570.1| transcriptional regulator [Listeria monocytogenes FSL N3-165] gi|258608344|gb|EEW20952.1| transcriptional regulator [Listeria monocytogenes F6900] gi|284056642|gb|ADB67583.1| hypothetical protein LM5578_0829 [Listeria monocytogenes 08-5578] gi|284059689|gb|ADB70628.1| hypothetical protein LM5923_0784 [Listeria monocytogenes 08-5923] gi|293589374|gb|EFF97708.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307570284|emb|CAR83463.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] Length = 68 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+E+ ++ IS +E G ++ I + L L L Sbjct: 5 KMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF 61 >gi|332298674|ref|YP_004440596.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181777|gb|AEE17465.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 117 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IF N + RK+ L+Q+++ + + +S +ETG + + + + Sbjct: 13 RKIFGENVKYYRKQMGLSQEQLSEILEISPNHLSVIETGGKFVTYKLLEKMIDVFNIAPS 72 Query: 79 KLL 81 L Sbjct: 73 LLF 75 >gi|328958843|ref|YP_004373754.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] gi|328675167|gb|AEB31212.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + LTQ+++ + + IS +E GK ++ + + H ++ L +L Sbjct: 3 NRIKVARIQVDLTQQQLAEKVDVTRQTISLIEKGKYNPSLKLCLNICHAVNKTLDELF 60 >gi|323141018|ref|ZP_08075925.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414507|gb|EFY05319.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 120 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 37/68 (54%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + + NN + +R +++++Q+ + +Q+ +S LE GK+ +++ I ++ L Sbjct: 5 TVNPDYKLIGNNIKQMRTKSQVSQQSLAKAINISQTHMSNLENGKTGVSLAIAIRISQHL 64 Query: 74 DTPLWKLL 81 L +L+ Sbjct: 65 KCSLDELI 72 >gi|313906268|ref|ZP_07839612.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313468888|gb|EFR64246.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 96 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +TQKE+ RTG AQ+ IS+LE G +I + LA +D L P Sbjct: 36 ARISQNMTQKELAERTGIAQTEISKLENGTRNPSIKLLQRLAEGMDMVLNISFTP 90 >gi|256599668|pdb|3FYA|A Chain A, Crystal Structure Of An R35a Mutant Of The Restriction- Modification Controller Protein C.Esp1396i gi|256599669|pdb|3FYA|B Chain B, Crystal Structure Of An R35a Mutant Of The Restriction- Modification Controller Protein C.Esp1396i Length = 99 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR E +TQ+++ ++ ++IS +E + I ++ ++ L+ Sbjct: 33 IKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVS 83 >gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 313 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+++ + G + +S ETG + ++ ++ LA D + +LL Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRELL 65 >gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] Length = 313 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+++ + G + +S ETG + ++ ++ LA D + +LL Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRELL 65 >gi|145594859|ref|YP_001159156.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145304196|gb|ABP54778.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 203 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N +R A ++ ++ +++ + +E G + + LA L PL +LL Sbjct: 29 VGSNVHRLRNTAGMSLADLATAGDISKTTLHGIEQGHGNPTLSTLWALATALRVPLGELL 88 Query: 82 K 82 + Sbjct: 89 E 89 >gi|119946356|ref|YP_944036.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119864960|gb|ABM04437.1| predicted DNA-binding transcriptional regulator, helix-turn-helix domain [Psychromonas ingrahamii 37] Length = 208 Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P K SD I ++ + IRK LT +E +TG A+S +S++E + + Sbjct: 11 PSMKISNDRGSDKIEPVKL--GERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISP 68 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M L L L +L P Sbjct: 69 TFQAMQKLTRGLQIDLPQLFAP 90 >gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 220 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 44 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 102 >gi|295132594|ref|YP_003583270.1| helix-turn-helix domain-containing protein [Zunongwangia profunda SM-A87] gi|294980609|gb|ADF51074.1| helix-turn-helix domain-containing protein [Zunongwangia profunda SM-A87] Length = 73 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+E L QK ++ + +E GK+ + +I +A L+ PL KL+ Sbjct: 12 LGARIKQLREEKGLDQKTFAFDCEIGRTQLYMIENGKTNPRLLTLIKIAKGLEVPLKKLI 71 >gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 190 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR++ T + TG A S +S LE+G+ +++ ++ +A PL +L+ Sbjct: 8 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 67 >gi|284028775|ref|YP_003378706.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808068|gb|ADB29907.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 116 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 33/65 (50%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++D ++ + + R R +LTQ+++ R G ++SW++ +E+G ++ L Sbjct: 1 MADVVIPDWTKLGSTLRAARSRQRLTQEQVAERAGVSRSWLARVESGHRAAEFQQVLRLV 60 Query: 71 HTLDT 75 + L Sbjct: 61 NALGM 65 >gi|183600843|ref|ZP_02962336.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] gi|188019628|gb|EDU57668.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC 25827] Length = 234 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + RK A +TQ E+ G +Q+ I ++ETGK+ + +I ++ L+ Sbjct: 2 KTTLAQRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATST-RLIEISKALNVDPE 60 Query: 79 KL 80 L Sbjct: 61 WL 62 >gi|182437780|ref|YP_001825499.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778414|ref|ZP_08237679.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178466296|dbj|BAG20816.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658747|gb|EGE43593.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 162 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + TG + ++S++E G + D + +A L L Sbjct: 9 LGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 >gi|312888681|ref|ZP_07748249.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298848|gb|EFQ75949.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 81 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L +L ++F + +++RKE KLT +++ R I ++E+GK I + +I LA Sbjct: 5 LDKKVL---ILFGKHHKSLRKERKLTYRQMAQRCNIDYGDIQKIESGKINITMLTLIELA 61 Query: 71 HTLDTPLWKLL 81 L+ P LL Sbjct: 62 KGLNLPPKDLL 72 >gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 158 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL--- 77 + N + +RK LTQ E G +++ +S E G S+++ + + + + Sbjct: 1 MIGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGASSVSTELIDRICQKFNVSYIDI 60 Query: 78 ---WKLLKP 83 KLL P Sbjct: 61 VGEEKLLTP 69 >gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 135 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + M R+ R + ++Q +I RTG + ++S +E G + +++ + + Sbjct: 11 QADVPVKSISMNIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKI 70 Query: 70 AHTLDTPLWKLL 81 A LD L + Sbjct: 71 AGALDLQLSQFF 82 >gi|302547803|ref|ZP_07300145.1| putative Helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302465421|gb|EFL28514.1| putative Helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 197 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E T ++ TG + S +S LE+G+ ++ ++ LA T L +L+ Sbjct: 13 VGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKTYGVQLDELV 72 >gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 200 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 5 KRDEPHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +P ++ R + R +R LT ++ RTG +S +S LE G Sbjct: 2 PTSKPPKTEQPPTRRHVLDAVGPRLRELRHRRGLTLADLAERTGINESTLSRLEGGARKP 61 Query: 62 NIDNMIILAHTLDTPLWKLL 81 ++ ++ LA PL L+ Sbjct: 62 TLELLLPLAEVYAVPLDDLV 81 >gi|300776123|ref|ZP_07085982.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505256|gb|EFK36395.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 97 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R IR+ LTQ+ + G +Q S++E K IN++ + ++ L+ Sbjct: 2 KVCGQNIRKIRRSKDLTQEYMAFEMGISQKAYSDIENSKVKINLEILTKISDILEIRPSD 61 Query: 80 L 80 + Sbjct: 62 I 62 >gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4] Length = 191 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R IRKE +TQ+E+ + G Q++I++LE+G+ + + L Sbjct: 12 IRKIRKELGITQEELARKAGVTQAYIAKLESGRVDPRLSTFNRILQAL 59 >gi|169830948|ref|YP_001716930.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169637792|gb|ACA59298.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 123 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R L Q ++ G +S ++ E G ++D +I L+ T L +L+ Sbjct: 4 FGETLKRLRHRMGLRQNDVAGMLGVERSTVANWERGVKQPSLDTLIKLSETFGVSLDELV 63 >gi|157961714|ref|YP_001501748.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157963271|ref|YP_001503305.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846714|gb|ABV87213.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] gi|157848271|gb|ABV88770.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 68 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R RKE ++Q ++ +S+ +E G+ I ++ LA L+ + +LL Sbjct: 8 FGFNLRKKRKELGMSQDKLALLAEIDRSYGGRIERGEVNITLEKAYQLAEVLECDVRELL 67 >gi|116332766|ref|YP_794293.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098113|gb|ABJ63262.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 104 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + +LTQ+ + + ++ IS ETGKS +ID+++ L++ L Sbjct: 1 MTLGAKLKQARADHQLTQQAVATQVAVSRQTISSWETGKSFPDIDSLVTLSNLYGLSLDI 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|307287056|ref|ZP_07567129.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501835|gb|EFM71125.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165830|gb|EFU09847.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 105 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLD 74 N R +R +TQ+++ + GF S++ +E GKS I I+ + + H LD Sbjct: 8 ANRIRELRIAKNMTQEKLAEKIGFDVSFLGRIERGKSANIQINTLEKIIHALD 60 >gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 206 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 1 MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M R R D + + +RK L+ E+ ++G A+S IS++E + Sbjct: 1 MSGRTRSLDRGDMDAGAQAITGQLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNE 60 Query: 59 STINIDNMIILAHTLDTPLWKLL 81 + + + L+ LD + + + Sbjct: 61 TNPTLATVWRLSQALDVSIDRFM 83 >gi|265995718|ref|ZP_06108275.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262767002|gb|EEZ12620.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 642 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 2 NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|322421833|ref|YP_004201056.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128220|gb|ADW15780.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 124 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 27/50 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R + LTQK++ RTG AQ ISE+E GK I D LA L+ Sbjct: 69 IRGARGKEGLTQKQLAQRTGIAQHHISEMENGKRPIGKDTARRLADALNI 118 >gi|229087060|ref|ZP_04219212.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] gi|228696253|gb|EEL49086.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] Length = 190 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR E KL+ +E+ +TG ++ + ++E G++ + + + L P + Sbjct: 14 QQVGQLLRKIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLGVIWKITKGLSIPFSR 73 Query: 80 LL 81 L+ Sbjct: 74 LM 75 >gi|229194008|ref|ZP_04320903.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876] gi|228589445|gb|EEK47369.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876] Length = 65 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE ++Q+++ + G ++++ISE+E K N+ I +A L T + + Sbjct: 2 NKIAELRKEKLISQEKLAAQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +TQ+ + G + + ++E G+ ++D + A L+T + Sbjct: 6 VGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQVANFF 65 >gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] Length = 197 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 + A+ R +R LT E+ R+G +++ IS +E G+++ + Sbjct: 3 SQIMEQAVPSLEQTIGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEASPTAQLLA 62 Query: 68 ILAHTLDTPLWKLL 81 L L T L L Sbjct: 63 KLCSALGTTLSALF 76 >gi|23502705|ref|NP_698832.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|261754250|ref|ZP_05997959.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|23348718|gb|AAN30747.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|261744003|gb|EEY31929.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 642 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 2 NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|330718310|ref|ZP_08312910.1| XRE-family DNA-binding domain-containing protein [Leuconostoc fallax KCTC 3537] Length = 302 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +R++ KL+Q + + + +S+ E G + +ID +I LA L+ L L Sbjct: 4 VFSEQLITLRQKKKLSQHALAQKIFVTRQSVSKWENGDAEPSIDKLISLAEILNVDLNHL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|325261429|ref|ZP_08128167.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032883|gb|EGB94160.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N RNIR++ TQKEI + Q+ S+ E GK I ++ LA + L Sbjct: 1 MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|325261427|ref|ZP_08128165.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032881|gb|EGB94158.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N RNIR++ TQKEI + Q+ S+ E GK I ++ LA + L Sbjct: 1 MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|228993099|ref|ZP_04153022.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228999148|ref|ZP_04158730.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229006696|ref|ZP_04164330.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228754557|gb|EEM03968.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228760765|gb|EEM09729.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228766747|gb|EEM15387.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + ++ L+ PL LL Sbjct: 4 GSAIREIRQRRGVTIAQICEGTGLSKGFMSQVENNKTSPSISTLETISKFLNVPLPYLL 62 >gi|225164027|ref|ZP_03726313.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] gi|224801370|gb|EEG19680.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] Length = 74 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQ+E+ + + ++I LE G+ ++ ++ +A L L+ Sbjct: 10 LGAVIRECRVALDLTQEELAEKADLSTNYIGNLERGEQEPSVTALVKVAAGLGITASSLI 69 >gi|224540895|ref|ZP_03681434.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM 15897] gi|224526193|gb|EEF95298.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 12 SDAILRERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 S+ + +E+ + + R E ++TQ+ + G ++ +S+ E G S + N+I Sbjct: 40 SEPVRKEKEEYAKTLGGVIKKHRMECQMTQEFVAETLGVSRQAVSKWENGSSDPSTTNLI 99 Query: 68 ILAHTLDTPLWKLLK 82 LA D ++LK Sbjct: 100 ALASLFDITPEEMLK 114 >gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 179 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LTQ+E+ R ++ +IS+LE ++ +I ++ + +L T + Sbjct: 4 GEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLMDILESLGTNIKDFF 62 >gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 107 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +Q E+ + G + + E GKS I +D +I +A LD PL +L Sbjct: 4 GEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLSAIL 62 >gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 187 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR++ T + TG A S +S LE+G+ +++ ++ +A PL +L+ Sbjct: 5 VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 64 >gi|88856689|ref|ZP_01131345.1| putative regulatory protein [marine actinobacterium PHSC20C1] gi|88814150|gb|EAR24016.1| putative regulatory protein [marine actinobacterium PHSC20C1] Length = 195 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S I E R R+ LT ++ TG ++S +S LE+G+ +++ ++ + Sbjct: 4 SQRIETELGQIAPRLRRARQNKNLTLDDLAQATGISKSTLSRLESGQRKPSLELLLPVVA 63 Query: 72 TLDTPLWKLLK 82 L PL +++ Sbjct: 64 ALSVPLDQIVT 74 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ RK LTQ ++ R G +QS + +E G+ ++ID + + H L + + +P Sbjct: 22 IRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQDDIVSIGRP 79 >gi|328958487|ref|YP_004375873.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] gi|328674811|gb|AEB30857.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] Length = 183 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER + + R +Q ++ ++ IS+ ETG ++DN++ L+ + Sbjct: 10 ERHMALGERLKESRVSKGFSQGDVAEHLQISRQSISKWETGNGYPDLDNLVKLSVYYEVS 69 Query: 77 LWKLLK 82 + LLK Sbjct: 70 IDDLLK 75 >gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 113 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK+A LTQ E+ R G QS ++ E GK +N++ +A LD + Sbjct: 1 MAFAERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSIDY 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 253 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQK++ + + +S+ E G S N+ +I +A LD + +LL Sbjct: 9 FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVSVTELL 68 Query: 82 K 82 + Sbjct: 69 R 69 >gi|270291165|ref|ZP_06197388.1| predicted protein [Pediococcus acidilactici 7_4] gi|270280561|gb|EFA26396.1| predicted protein [Pediococcus acidilactici 7_4] Length = 114 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 + +RKE+ LTQ+E+ ++ + ++IS +E + I+ N+ +A L +LL Sbjct: 8 GKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQNISWKNIEAIAEALGLSTIELL 67 Query: 82 K 82 + Sbjct: 68 Q 68 >gi|257791171|ref|YP_003181777.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832901|ref|ZP_08165574.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475068|gb|ACV55388.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485766|gb|EGC88230.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 64 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R R+ L+Q+++ G ++S I +E+G+ ++ +D++ +A LD + Sbjct: 1 MLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQVRD 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|228994857|ref|ZP_04154652.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764882|gb|EEM13641.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 64 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR E +TQ E+ T ++ I +E G+ ++ I + +L L L Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 60 >gi|291286686|ref|YP_003503502.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883846|gb|ADD67546.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 72 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKL 80 F R +R E +TQ+E+ ++G ++ +LE S+ + + LA LD + +L Sbjct: 8 FGKKLRQLRTERNMTQEELAEKSGIDYKYLQKLEGQSPSSPTLSTLEKLAVGLDITIIQL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|194016509|ref|ZP_03055123.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194011982|gb|EDW21550.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 153 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK + TQ+E+ + G ++ +++ E+G++ +I+N LA L L+ Sbjct: 13 NLKKMRKIHRFTQEEVAEKIGVSRQAVAKWESGETVPDINNCKALAELYGVALDDLV 69 >gi|169351011|ref|ZP_02867949.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] gi|169292073|gb|EDS74206.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] Length = 117 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R L+Q+ + + + + IS +E G + +++ ++ +A+ L Sbjct: 6 ELIGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALAVSADF 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 122 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I NN + +RK+ +L Q E+ + +Q + ETG++ D + ILA D Sbjct: 6 RKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFFDVSTD 65 Query: 79 KLL 81 LL Sbjct: 66 YLL 68 >gi|325299767|ref|YP_004259684.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319320|gb|ADY37211.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 103 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 33/56 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RN RKE K+TQK++ + G QS+I+ +E G+ + + + +AH L+ L Sbjct: 43 YGEILRNRRKELKMTQKQLAQKIGKEQSYIARVEKGEVDMQLSSFFRIAHALNIEL 98 >gi|318059210|ref|ZP_07977933.1| hypothetical protein SSA3_14776 [Streptomyces sp. SA3_actG] Length = 174 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ L+ + R+G ++ +S LE G ++ + + L PL Sbjct: 8 VGARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPL 63 >gi|302879041|ref|YP_003847605.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581830|gb|ADL55841.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 82 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +R + LTQ ++ R +S IS LE + ++ + LA L P Sbjct: 9 KMFGAVLQELRLQQALTQDQLAERADTERSHISALERAEKGPSLATIFSLADALKIPAGD 68 Query: 80 LLK 82 L+ Sbjct: 69 LMT 71 >gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 436 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R++ R R + Q ++ R G + S+++ +E I ++ LA L Sbjct: 1 MPDRLMIGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEALKV 60 Query: 76 PLWKLLK 82 +L + Sbjct: 61 EPSQLTQ 67 >gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 197 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ RKE L+Q ++ ++ IS E G + +I N+++L+ + L K Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|82700630|ref|YP_415204.1| SAM-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|260168049|ref|ZP_05754860.1| SAM-binding motif-containing protein [Brucella sp. F5/99] gi|260884562|ref|ZP_05896176.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261219422|ref|ZP_05933703.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261222969|ref|ZP_05937250.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261315797|ref|ZP_05954994.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261316343|ref|ZP_05955540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261322485|ref|ZP_05961682.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325879|ref|ZP_05965076.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261750997|ref|ZP_05994706.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|265987413|ref|ZP_06099970.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265991880|ref|ZP_06104437.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265998928|ref|ZP_06111485.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294851095|ref|ZP_06791771.1| SAM-binding domain-containing protein-containing protein [Brucella sp. NVSL 07-0026] gi|82616731|emb|CAJ11816.1| SAM (and some other nucleotide) binding motif:Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|260874090|gb|EEX81159.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260921553|gb|EEX88206.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260924511|gb|EEX91079.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295175|gb|EEX98671.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261295566|gb|EEX99062.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261301859|gb|EEY05356.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261304823|gb|EEY08320.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261740750|gb|EEY28676.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|262553617|gb|EEZ09386.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|263002836|gb|EEZ15239.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|264659610|gb|EEZ29871.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294821738|gb|EFG38734.1| SAM-binding domain-containing protein-containing protein [Brucella sp. NVSL 07-0026] gi|326409859|gb|ADZ66924.1| transcriptional regulator, Cro/CI family [Brucella melitensis M28] gi|326539572|gb|ADZ87787.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 642 Score = 52.7 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 2 NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] Length = 239 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +RKE +Q+E+ NR ++ +S+ E G +T ++ ++ L+ + +L+ Sbjct: 3 FYENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTTPELNKLMELSRIFQVSIDELV 62 >gi|291533822|emb|CBL06935.1| Helix-turn-helix [Megamonas hypermegale ART12/1] Length = 102 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R E K+TQK++ R G + + +S +E K + +A L+ L +L++ Sbjct: 35 NICEKRHEKKMTQKQLAMRAGISTAMVSFIENDKRQPTFLVIASIAKALNVKLDELVE 92 >gi|262278864|ref|ZP_06056649.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259215|gb|EEY77948.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 197 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R T + R ++S IS +E G+++ + LA+ L PL +L Sbjct: 9 AQQVRELRLARGYTLDVLATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67 >gi|258513952|ref|YP_003190174.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777657|gb|ACV61551.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 71 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R +TQK++ + G A+ ++ +E G +I+ I + L L +L Sbjct: 2 GKNLRIKAARAAKDMTQKDLADAVGVARQTMNAIEKGDYNPSINLCISICKILGKTLDQL 61 Query: 81 L 81 Sbjct: 62 F 62 >gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] Length = 124 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R A +TQ+++ R ++ IS E + + + +I +A LL Sbjct: 22 FGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYLL 81 >gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] Length = 301 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R++RKE KL QK++ G AQ+ I+ E N D + LA + + LL Sbjct: 4 FASRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQNLRFPNQDILNKLADYFNVSIDYLL 63 >gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 116 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N+RK+A LTQ ++ + G +Q + E G DN++ +A L+ + L+ Sbjct: 3 FSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYLV 62 >gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL F2-515] Length = 163 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|171910469|ref|ZP_02925939.1| Transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 198 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR+ A R + + +R + + + + +G ++S +SE+E ++ Sbjct: 1 MPRKAAARVKDVPAEAISRHL-GARVKQLRSDRNWSLEALAGASGVSRSMLSEIEREQAN 59 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 + + +A L +L++ Sbjct: 60 PTLAVTLRIAQAFGMSLSELIE 81 >gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|37676118|ref|NP_936514.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200659|dbj|BAC96484.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 507 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|24411175|emb|CAC80863.1| RtrR protein [Acinetobacter sp.] Length = 89 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 26/46 (56%) Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 TQ+ + + G +S+I +E G+ + ++ + +A L+ + +++ Sbjct: 22 TQEALALQCGIDRSYIGRIERGEVNLTVEKLYEIATALEVDMKEII 67 >gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus LMD-9] Length = 170 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +R E ++Q ++ G + IS+ E KS N+ +A + +L Sbjct: 8 FGPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67 >gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL J1-175] gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816] gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220] gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e] gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland 1988] gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL R2-561] gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S] gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161] gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28] gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e] gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] Length = 107 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + ++ E+ + G A+S+IS +E + +I + +A L P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 63 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN R RKE ++Q+++ R ++ I+ +E K + LA L + +L K Sbjct: 3 NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELFK 61 >gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 203 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E + + N +G ++S IS++E ++ + +A L +L+ Sbjct: 26 FCRRLKQLRAERGWSLDSLANASGVSRSMISQVERNQANPTLAVAFRIARAFGMSLAELV 85 Query: 82 K 82 + Sbjct: 86 E 86 >gi|157150600|ref|YP_001449787.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075394|gb|ABV10077.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] Length = 70 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 20 MIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 MI N + R E +TQ ++ + G + I +E GK ++ + + L+ L Sbjct: 5 MIMAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTL 64 Query: 78 WKLL 81 +L Sbjct: 65 DQLF 68 >gi|89100997|ref|ZP_01173841.1| hypothetical protein B14911_09197 [Bacillus sp. NRRL B-14911] gi|89084293|gb|EAR63450.1| hypothetical protein B14911_09197 [Bacillus sp. NRRL B-14911] Length = 177 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK LTQ ++ + +++ S++E+G ++D LA LD LL Sbjct: 9 LRKNKNLTQADVADSIFIDRAYYSQIESGTRNPSVDISRNLAKVLDINPSLLL 61 >gi|147668863|ref|YP_001213681.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269811|gb|ABQ16803.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 131 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R E +L+ +E+ ++G + S++ +E G+ D + LA D P+ L Sbjct: 5 FGEYLRTLRVEKRLSLREVEQQSGVSNSYLGLIERGQRPIPGADILKKLAPVYDVPVRDL 64 Query: 81 LK 82 LK Sbjct: 65 LK 66 >gi|331005361|ref|ZP_08328745.1| DNA-binding protein [gamma proteobacterium IMCC1989] gi|330420815|gb|EGG95097.1| DNA-binding protein [gamma proteobacterium IMCC1989] Length = 190 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RK+ KLT ++ + +G ++S +S++E G++ + +A + + Sbjct: 12 QVLCQRVTELRKKNKLTLIQLASLSGVSRSMLSQIERGQANPTLAVTFRIAQAFGMSIGE 71 Query: 80 LLK 82 L++ Sbjct: 72 LVE 74 >gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 181 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ+E+ +R + +IS+LE ++ +I + + + + Sbjct: 4 GERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQEFF 62 >gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 198 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ A LTQ E+ R ++ IS ETGKS +++++ + D LLK Sbjct: 4 GQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKSYPDVESVSLACDLFDVSADALLK 63 >gi|323339906|ref|ZP_08080175.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] gi|323092779|gb|EFZ35382.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] Length = 179 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ R E+ TQ+++ + ++ IS E G++ +I +++ L+ D L L+K Sbjct: 48 GKRLKDARIESGYTQEQVAEQLDVSRQTISSWENGRTFPDIVSVVSLSDIYDVSLDVLIK 107 >gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] Length = 305 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ R R E +TQ+++ + + +S ETG+ +I + LA L + Sbjct: 2 EKEKIGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 TELL 65 >gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R +RK LTQ+ + + + LE + + D + LA L+ P Sbjct: 6 REELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAFSPSFDTLTKLAKGLNVPKV 65 Query: 79 KLLK 82 L+ Sbjct: 66 ALIT 69 >gi|56695066|ref|YP_165413.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56676803|gb|AAV93469.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R+ L+ + + N +G ++S +S++E G+S+ I + L L Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQV 65 >gi|326424421|ref|NP_763514.2| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|319999811|gb|AAO08504.2| Predicted transcriptional regulator [Vibrio vulnificus CMCP6] Length = 507 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVIAEVFQKDPAWFL 80 >gi|315182632|gb|ADT89545.1| transcriptional regulator, HTH_3 family [Vibrio furnissii NCTC 11218] Length = 207 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA2] gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA3] gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium sp. P08] Length = 508 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK+ +TQ ++ +QS I +E+G ++++ + +A L++P+ Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|317133712|ref|YP_004090316.1| helix-turn-helix domain protein [Ruminococcus albus 7] gi|315450870|gb|ADU24430.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 90 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + LTQK++ +R+G AQ IS+LE G + +I + LA+ + L Sbjct: 37 ARNSSGLTQKQLSDRSGIAQGDISKLENGNANPSIRTLQRLANAMGKKL 85 >gi|260770117|ref|ZP_05879050.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972] gi|260615455|gb|EEX40641.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972] Length = 207 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] Length = 177 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +E + N +++RK LTQ E G +++ +S E G S+++ + + I+ + Sbjct: 16 KEFAMIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75 Query: 77 LWKLL 81 ++ Sbjct: 76 YVDIV 80 >gi|167648136|ref|YP_001685799.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350566|gb|ABZ73301.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 106 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R LT + R G ++S++SELE+G T +I+ + A D P+ L Sbjct: 1 MINNALRLVRVYHNLTPADASARLGISRSYLSELESGNKTASIEVLQKYAKAFDMPVSSL 60 Query: 81 L 81 + Sbjct: 61 M 61 >gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 183 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+ + + G S IS +E+GK+ ++ + + + L + Sbjct: 6 VGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKANPSVGALKRILDAVPIGLAEFF 65 >gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 205 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK KLT + + +G A S IS++E G + +D ++ LA LD + +L+ Sbjct: 7 LGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQLI 66 >gi|86143509|ref|ZP_01061894.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] gi|85829956|gb|EAQ48417.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] Length = 71 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N +R++ TQ ++ G + I +LE GK ++ ++ L L+ Sbjct: 7 KKKIGNRIVKLREQKGWTQSDLARECGKDRQAIEKLENGKVNPTAYSLFEISKALKIELY 66 Query: 79 KLLK 82 +LLK Sbjct: 67 QLLK 70 >gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 103 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ L+ +++ + G +Q ++ +E G +I+ + + + L L Sbjct: 9 GKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGNRKADIETLEKICYALGITLIDFF 67 >gi|298290472|ref|YP_003692411.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296926983|gb|ADH87792.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 229 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 14 AILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ ER + R +R+E +LT ++ + G + +S++E G + ++ + ++ Sbjct: 35 PLVNERTLEQALGQQVRAVRRELELTVSDLASAAGISVGMLSKIENGLISPSLATLQAIS 94 Query: 71 HTLDTPLWKLLK 82 L+ P+ L Sbjct: 95 SALNVPISTLFT 106 >gi|260459627|ref|ZP_05807881.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034429|gb|EEW35686.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 199 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + ++ R +R+ LT EI + G + W+S++E G ST ++ ++ A P+ Sbjct: 17 DERVLASDIRALRRVRGLTLAEIALKLGRSVGWLSQVERGLSTPSVGDLRAFAELFGVPI 76 >gi|261819878|ref|YP_003257984.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603891|gb|ACX86377.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 103 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 31/55 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R R +Q+E+ R+G QS IS++E+G + + ++I LA LD L+ Sbjct: 10 ESLREARARKGFSQRELSARSGVPQSHISKIESGGVDLRVSSLIALARVLDLELF 64 >gi|154502909|ref|ZP_02039969.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] gi|153796448|gb|EDN78868.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] Length = 118 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LTQ+E+ + + + I+++E GK + + LA L L L+ Sbjct: 9 LGQKMREARKKKDLTQQELADLSHVSIKQIAKIEKGKINPSYLILKALAKVLPISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|78067667|ref|YP_370436.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968412|gb|ABB09792.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 104 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + ++A L+E R R E ++Q+ + + +S + ++E G+ Sbjct: 22 IPMERVSGRSDTEANLKE---VGKAIRVRRLELDISQETLAHLANIDRSHMGKIERGERN 78 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + N++ +A L +LL Sbjct: 79 VTLLNLLKIARALSCRPSELL 99 >gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 355 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A + Q+ + G + I+ E G+ ++ ++ L L P+ +L Sbjct: 3 LRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPIDVML 58 >gi|323485286|ref|ZP_08090635.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] gi|323401322|gb|EGA93671.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] Length = 141 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75 I NN + R + L+Q+ + N G+ A+S IS++E+G + + + I+A L Sbjct: 10 KILGNNIKKYRDDKGLSQEALANLCGWNTDNARSTISKIESGTNDVPTSKLKIIAEKLGV 69 Query: 76 PLWKLL 81 + L+ Sbjct: 70 SVCDLM 75 >gi|297162420|gb|ADI12132.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 196 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +R E LT +++ + + S +S +E G+ + + +A L PL + Sbjct: 5 LTLGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQKAPTVLVLARIADGLGVPLAE 64 Query: 80 LL 81 L+ Sbjct: 65 LV 66 >gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 173 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ +TP+ L Sbjct: 1 MLNENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVSAL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|238020422|ref|ZP_04600848.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147] gi|237867402|gb|EEP68408.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC 51147] Length = 198 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPL 77 N RK+A LTQ+E+ GF+ + +S +E G++ D M+ ++ + PL Sbjct: 5 LAQWVANARKQANLTQEELAEAIGFSGKGSVSAIENGRNKPTFDIMVKISEVCNYPL 61 >gi|237746706|ref|ZP_04577186.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229378057|gb|EEO28148.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 99 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R L+Q ++ + + S++S +E + I + + + H L P+ LL Sbjct: 4 GNAIKTCRIRRGLSQTKLAELSECSVSYLSLIEHNQRDITVSTLQRICHALHVPMGILL 62 >gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 113 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 IL R I + R +R++A TQ+ + + G + I + E G + +N D + +A L Sbjct: 3 PILNSREI-GHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQAL 61 Query: 74 DTPLWKLLK 82 P+ L Sbjct: 62 SIPIQSLFT 70 >gi|332665060|ref|YP_004447848.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333874|gb|AEE50975.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 174 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 10 HLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 H + + R+R + R RKEA LTQ+E+ R+G + +IS +E + I + + Sbjct: 100 HSTPDLNRDRGVPVGEVLRQARKEAGLTQEELAKRSGTTKHYISRIENHHADIEVGTLQR 159 Query: 69 LAHT-LDTPL 77 + L L Sbjct: 160 IVELGLGKQL 169 >gi|325475236|gb|EGC78421.1| DNA-binding protein [Treponema denticola F0402] Length = 104 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR + +++Q E+ R + ++I+ +E + ++ + + L+T ++L Sbjct: 8 ILAKNIRRIRHKLEISQMELALRADVSIAFINAIENKQKWVSAATLSKITDALNTTPYEL 67 Query: 81 L 81 Sbjct: 68 F 68 >gi|298252278|ref|ZP_06976081.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297546870|gb|EFH80738.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 131 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R R++ +T KE+ + G ++ ++ E+E G+ + + LA L+ + Sbjct: 5 QELLGRVIRRERQDHNMTIKELGEKAGLSEIYVGEIERGQKYPSAKVLESLAGALELDVA 64 Query: 79 KLLK 82 +LL+ Sbjct: 65 ELLE 68 >gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20] Length = 207 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R RK+ +TQ+E+ ++S IS E G++ +I +I LA L + Sbjct: 1 MAFHQMIRERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|257792397|ref|YP_003183003.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490265|ref|ZP_07948753.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325833618|ref|ZP_08166067.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476294|gb|ACV56614.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910759|gb|EFV32380.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA] gi|325485542|gb|EGC88011.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 83 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R EA L+Q E+ G ++ IS +ETG ++L LD L Sbjct: 23 NRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAKLALVLCIALDKKFEDLF 80 >gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 189 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ ++ ++ +G ++ +S+LE+G S+ +D + +A L P+ LL Sbjct: 17 GSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSSPRVDTLDAIATALRLPVGDLL 75 >gi|194467240|ref|ZP_03073227.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454276|gb|EDX43173.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 212 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R++ + TQ+++ R ++ IS E G+S +I ++ ++ L LL Sbjct: 3 FADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 193 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + I R +RK LT K++ TG + ++S+LE + +I + ++ Sbjct: 2 DDQKKRETQPIIGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNVIG 61 Query: 71 HTLDT 75 L Sbjct: 62 KALGV 66 >gi|42525646|ref|NP_970744.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41815657|gb|AAS10625.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 104 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR + +++Q E+ R + ++I+ +E + ++ + + L+T ++L Sbjct: 8 ILAKNIRRIRHKLEISQMELALRADVSIAFINAIENKQKWVSAATLSKITDALNTTPYEL 67 Query: 81 L 81 Sbjct: 68 F 68 >gi|148545002|ref|YP_001272372.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184154336|ref|YP_001842677.1| transcription regulator [Lactobacillus reuteri JCM 1112] gi|227364146|ref|ZP_03848243.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683349|ref|ZP_08162865.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532036|gb|ABQ84035.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|183225680|dbj|BAG26197.1| transcription regulator [Lactobacillus reuteri JCM 1112] gi|227070785|gb|EEI09111.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977699|gb|EGC14650.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 206 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R++ + TQ+++ R ++ IS E G+S +I ++ ++ L LL Sbjct: 3 FADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|47570199|ref|ZP_00240853.1| cI-like repressor [Bacillus cereus G9241] gi|228983330|ref|ZP_04143544.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229153853|ref|ZP_04281984.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|47553143|gb|EAL11540.1| cI-like repressor [Bacillus cereus G9241] gi|228629657|gb|EEK86353.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|228776444|gb|EEM24796.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 67 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G + + D ++ +A L + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKISI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 DELM 65 >gi|318061628|ref|ZP_07980349.1| hypothetical protein SSA3_27058 [Streptomyces sp. SA3_actG] Length = 77 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +L +R + R R EA +TQ+ + RTG + I E+G + +D+++++A Sbjct: 7 PARVLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIAR 66 Query: 72 TLDTPLWKLL 81 L PL L+ Sbjct: 67 ALGRPLADLV 76 >gi|298717105|ref|YP_003729747.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361294|gb|ADI78075.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 182 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R+ + L+ E+ R G A+S +S+LE G I+ + L TL+ P +L Sbjct: 7 IIANALVRERQRSGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66 Query: 81 LKP 83 L+P Sbjct: 67 LEP 69 >gi|291521518|emb|CBK79811.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 118 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 216 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RK+ ++T E+ R + S ISE+E G+ T +++ ++ +A L T + L Sbjct: 1 MLGERIRTLRKKMRMTATELARRVKTSPSHISEIERGEKTPSLNLLVKIAKELQTSIDYL 60 >gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 70 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N+ + +RK KLTQ+E+ + G + I +E GK + +++ +A TL+ L + Sbjct: 7 FSNHIQELRKAKKLTQQELADAIGMTRQTIVAIEKGKYSPSLEAAFRIAQTLEQSLTDVF 66 >gi|302873056|ref|YP_003841689.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688788|ref|ZP_07631234.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302575913|gb|ADL49925.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 67 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E +TQ+E+ + + IS +E+GK + I + L L L Sbjct: 4 NKIKTARVEKGITQEELADMIKVTRQTISLIESGKYNPTLKLCISICLALGKTLNDLF 61 >gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+++ + G ++ IS E S ++ ++ + + L +L+K Sbjct: 6 GHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISNPDLKTILEITKLFNVSLNQLIK 65 >gi|282600636|ref|ZP_05979286.2| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571663|gb|EFB77198.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 120 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 11 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 70 Query: 82 KP 83 P Sbjct: 71 NP 72 >gi|166033445|ref|ZP_02236274.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225374572|ref|ZP_03751793.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|166026630|gb|EDR45387.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225213632|gb|EEG95986.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|291524361|emb|CBK89948.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 118 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|139438183|ref|ZP_01771736.1| Hypothetical protein COLAER_00724 [Collinsella aerofaciens ATCC 25986] gi|133776380|gb|EBA40200.1| Hypothetical protein COLAER_00724 [Collinsella aerofaciens ATCC 25986] Length = 72 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R I R++ +++ + TG ++ ++ +E G + + + +A L Sbjct: 3 ERAEQILGRRVEETRRDLGISKVDFCVATGISRPYLDRIEGGTANFTLKVLFKIAPALGM 62 Query: 76 PLWKLLK 82 + +LL+ Sbjct: 63 TVSELLE 69 >gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 104 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 27/59 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R RK A LTQ ++ RTGF IS ETG T +I+ ++ A L Sbjct: 3 RTGLGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEALGVKP 61 >gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 120 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ RK +TQKE+ R G +S+IS LE G++ + + + I +A L L Sbjct: 58 YGEVLRDRRKALGITQKELAERIGRDRSYISRLEKGETDLQLSSFIRIATALGIML 113 >gi|317475652|ref|ZP_07934913.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316908222|gb|EFV29915.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 104 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 12 SDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 S ER + + + R RKE KLTQK++ + G QS+I+ +E G++ I + + Sbjct: 30 SRESFNERTMAWYYGDILRERRKELKLTQKQLAQKIGKEQSYIARVEKGEADIQLSSFFR 89 Query: 69 LAHTLDTP 76 +A L Sbjct: 90 IARALGIE 97 >gi|309776192|ref|ZP_07671183.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916143|gb|EFP61892.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|303326019|ref|ZP_07356462.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302863935|gb|EFL86866.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 93 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LTQ E+ + +G ++ ++S LE G ++ ++ +A L +L+ Sbjct: 17 EARKAADLTQVELADFSGLSKPYVSGLERGNINASVYALMRVAEVLKVAPSELM 70 >gi|257439384|ref|ZP_05615139.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198259|gb|EEU96543.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 90 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK A LTQK++ + G AQ+ IS E G S +++ + +A + L Sbjct: 36 ESRKAAGLTQKQLAEKMGTAQANISRFENGNSNPSLEFLQKMAACMGKTL 85 >gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82] gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82] Length = 170 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + +N + +RK A ++Q+++ T ++ +S+ E+G+S ++ +A L Sbjct: 25 KNMLSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGVALE 84 Query: 79 KLL 81 +L Sbjct: 85 DML 87 >gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 354 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + RK+ KLTQ ++ R ++S IS E G +I +I LA+ ++ + L Sbjct: 5 VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64 Query: 81 L 81 Sbjct: 65 F 65 >gi|160916257|ref|ZP_02078464.1| hypothetical protein EUBDOL_02284 [Eubacterium dolichum DSM 3991] gi|158431981|gb|EDP10270.1| hypothetical protein EUBDOL_02284 [Eubacterium dolichum DSM 3991] Length = 72 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E++I N+ + +R E L+Q+ + G +++ IS +ETG+ +IL LD Sbjct: 5 EKLILKNHLKEVRSEKGLSQERLSQIVGVSRNTISSIETGQFNPTAKLALILCIALDKKF 64 Query: 78 WKLL 81 +L Sbjct: 65 EELF 68 >gi|154498504|ref|ZP_02036882.1| hypothetical protein BACCAP_02493 [Bacteroides capillosus ATCC 29799] gi|150272572|gb|EDM99757.1| hypothetical protein BACCAP_02493 [Bacteroides capillosus ATCC 29799] Length = 76 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGK-STINIDNMIILAHTL 73 ER I RK+A LTQ+ + R G + +++ ++E TG ++++ + +A L Sbjct: 6 PERYITLGLKIAYYRKKAGLTQEVLAERIGKSVNFVGQVEGTGTIRGVSLETLFKIAQVL 65 Query: 74 DTPLWKLLK 82 P KLL+ Sbjct: 66 KIPPSKLLE 74 >gi|13471336|ref|NP_102905.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022081|dbj|BAB48691.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 180 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++ R +R+ LT EI + + W+S++E G ST ++ ++ A P+ Sbjct: 1 MLASDIRALRRARGLTLAEIALKLDRSVGWVSQVERGLSTPSLSDLRAFAELFGVPI 57 >gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 247 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F NN + R + + QKE G S ++ E + +I +A L P+ + Sbjct: 1 MSFGNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNHREPKTEILIKIADALLIPIDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 73 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + IRKE L+Q+ + + G +++ IS +ETG+ +IL LD Sbjct: 5 LILHNRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAKLALILCIALDCQFEN 64 Query: 80 LL 81 + Sbjct: 65 MF 66 >gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 115 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N+RKEA LTQ ++ + G +Q + E G DN++ L+ L + LL Sbjct: 3 FSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDYLL 62 >gi|284044518|ref|YP_003394858.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948739|gb|ADB51483.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 94 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R+ F R +R ++ E+ T + ++ +E + + M+ +A L PL Sbjct: 12 DRLAFGRAVRELRGRRGMSLSELGRATLVHEGYLGAVERAEVEPTLRTMVRVAGGLGVPL 71 Query: 78 WKLLK 82 L++ Sbjct: 72 SVLVE 76 >gi|255066370|ref|ZP_05318225.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256] gi|255049250|gb|EET44714.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256] Length = 153 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 2 PRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 PRRK D A F ++R + TQ E+ G Q ++S +E K Sbjct: 59 PRRKAAMDRAAAKIADKIALKAGGETFVSLRMKKGFTQSELAAAAGLRQPYLSRIENSKQ 118 Query: 60 TINIDNMIILAHTLDTPLWKL 80 +++ + + LA+ L ++ Sbjct: 119 SLHNETVQKLANALGVSPLEV 139 >gi|225570864|ref|ZP_03779887.1| hypothetical protein CLOHYLEM_06968 [Clostridium hylemonae DSM 15053] gi|225160326|gb|EEG72945.1| hypothetical protein CLOHYLEM_06968 [Clostridium hylemonae DSM 15053] Length = 183 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 MI N R +R+E KL+ +E+ + ++S ++++E G++ I + +++ + P Sbjct: 3 PMNMIVAKNIRRLREENKLSMEELSKLSSVSKSMLAQIERGEANPTISTLWKISNGMKVP 62 Query: 77 LWKL-LKP 83 L ++P Sbjct: 63 FDHLTVRP 70 >gi|168183417|ref|ZP_02618081.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|182673458|gb|EDT85419.1| putative DNA-binding protein [Clostridium botulinum Bf] Length = 140 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F F+NIRKE L+Q+++ + + + IS +E+G+ + + + +A L +L Sbjct: 3 FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 79 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R A +TQ E+ + G + I +E G+ + +++ +A PL + + Sbjct: 12 IRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRYSPSLEVAFRIAAAFGVPLEHVFQ 69 >gi|29833583|ref|NP_828217.1| transcriptional regulatory protein [Streptomyces avermitilis MA-4680] gi|29610707|dbj|BAC74752.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 201 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ + ++E ++ +I ++ + L + Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSVTT 79 Query: 80 LL 81 LL Sbjct: 80 LL 81 >gi|290890363|ref|ZP_06553439.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] gi|290479981|gb|EFD88629.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] Length = 67 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 35/60 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R + L+Q+++ + ++ IS+ E+G++T +++N+I L+ LD L L+ Sbjct: 4 FPEQLKKYRNKKNLSQEDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLV 63 >gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273] gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 370 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R + +QKE+ G + I LE KS + ++ +A LD PL Sbjct: 4 QLLSANVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSEPRMSSLQAIARALDVPLQD 63 Query: 80 LLKP 83 +P Sbjct: 64 FFRP 67 >gi|56696936|ref|YP_167298.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678673|gb|AAV95339.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 207 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ ++ G A+S +S++E G+ + D + LA L + +L Sbjct: 27 LGARVRELRKARDWTLEQAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQISVPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|330879391|gb|EGH13540.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 95 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + R LTQ++ + + +++++S LE G +D + LA ++ Sbjct: 4 KQAFGQALKQFRLAKGLTQEDFSSIS--SRTYLSTLERGLKCPTLDKLEGLASVMEVHPL 61 Query: 79 KLL 81 +L Sbjct: 62 SVL 64 >gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641] gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641] Length = 197 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ RKE L+Q E+ ++ IS E G + +I N+++L+ + L K Sbjct: 1 MQVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|302205618|gb|ADL09960.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis C231] gi|308275853|gb|ADO25752.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis I19] Length = 158 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78 R +RK L+Q + + +++ IS LE +++ + + LA L P Sbjct: 31 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 90 Query: 79 KLL 81 LL Sbjct: 91 VLL 93 >gi|260899786|ref|ZP_05908181.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AQ4037] gi|308110450|gb|EFO47990.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AQ4037] Length = 518 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +ID Sbjct: 4 SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P W L Sbjct: 64 MLEVVAEVFQKDPAWFL 80 >gi|257090409|ref|ZP_05584770.1| predicted protein [Enterococcus faecalis CH188] gi|256999221|gb|EEU85741.1| predicted protein [Enterococcus faecalis CH188] Length = 75 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NF+ R++ KLTQKE+ + ++ +I +LE+G S+ + +I+A PL L Sbjct: 4 NFKMEREKLKLTQKELAEKLDLSEVYIRKLESGASSPSTKKAVIIAEFFGKPLDYLF 60 >gi|257063361|ref|YP_003143033.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791014|gb|ACV21684.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R F + +RK A +TQ E+ +R G +S+ E G++ ++ L L+ Sbjct: 2 PVDRAGFGKTIQALRKHASVTQGEVASRVGVTDKAVSKWERGEALPAAESFAALGKALNV 61 Query: 76 PLWKLLK 82 P L + Sbjct: 62 PALVLFE 68 >gi|324009974|gb|EGB79193.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 116 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79 >gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] Length = 251 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79 >gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli TA280] gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli TA280] Length = 251 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79 >gi|317054864|ref|YP_004103331.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447133|gb|ADU20697.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 211 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D + R R +TQK+ TG +QS++S +E G+ +I +I L Sbjct: 3 ADKTQQYLQQVGERLRGARLLMGITQKQAAQATGMSQSFLSLVERGRKSICTAQIISLIR 62 Query: 72 TLDTP 76 P Sbjct: 63 YYKVP 67 >gi|302379450|ref|ZP_07267937.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303233840|ref|ZP_07320493.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|302312795|gb|EFK94789.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302495035|gb|EFL54788.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 98 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 I + I + R LTQK++ +TG QS IS+LE G +I+ + LA Sbjct: 22 KNIQPDMDII-RALVSARTSQNLTQKQLSEKTGIDQSDISKLENGTRNPSINLLKRLADG 80 Query: 73 LDTPL 77 L L Sbjct: 81 LGMDL 85 >gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] Length = 251 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79 >gi|229019581|ref|ZP_04176397.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229025821|ref|ZP_04182220.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228735529|gb|EEL86125.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228741747|gb|EEL91931.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 4 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLDTISNFLNVPLPYLL 62 >gi|220905049|ref|YP_002480361.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869348|gb|ACL49683.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 82 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 36/59 (61%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + L+Q++ + G ++ +I++LETG+ +++ +I++A ++ +L+ Sbjct: 12 AKTVRSLRTRSGLSQEQFADFAGLSRVYIAQLETGERGASLNALILIARSVRMTGSELV 70 >gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019] gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019] Length = 251 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79 >gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A] gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A] gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A] gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A] gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli WV_060327] gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. 493-89] gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. H 2687] gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. LSU-61] gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227] gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] Length = 251 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79 >gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 116 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N+RK+A LTQ ++ + G +Q + E G DN++ +A L+ + L+ Sbjct: 3 FSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYLV 62 >gi|262282933|ref|ZP_06060700.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261185|gb|EEY79884.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D +ER + +N +++RK LTQ E G +++ +S E G S I+ + + + Sbjct: 6 DIKSKERAMVGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSPISTELIDTICQK 65 Query: 73 LDTPLW------KLLKP 83 + K+L P Sbjct: 66 FNVSYVAIVGEEKMLNP 82 >gi|302518782|ref|ZP_07271124.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302427677|gb|EFK99492.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 77 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +L +R + R R EA +TQ+ + RTG + I E+G + +D+++++AH Sbjct: 7 PARVLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIAH 66 Query: 72 TLDTPLWKLL 81 L L L+ Sbjct: 67 ALGRSLADLI 76 >gi|302518777|ref|ZP_07271119.1| DNA-binding protein [Streptomyces sp. SPB78] gi|318061623|ref|ZP_07980344.1| putative DNA-binding protein [Streptomyces sp. SA3_actG] gi|318075837|ref|ZP_07983169.1| putative DNA-binding protein [Streptomyces sp. SA3_actF] gi|302427672|gb|EFK99487.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 280 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R +R EA L K++ R G+ +S +S LETGK T +D++ A D Sbjct: 7 QTGREALGARLRELRTEAGLQGKDLAARLGWQRSKVSRLETGKQTPTVDDLATWAQATD 65 >gi|238760729|ref|ZP_04621847.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC 35236] gi|238701055|gb|EEP93654.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC 35236] gi|318604154|emb|CBY25652.1| hypotethical transcriptional regulator [Yersinia enterocolitica subsp. palearctica Y11] gi|318605347|emb|CBY26845.1| hypothetical protein Y11_25291 [Yersinia enterocolitica subsp. palearctica Y11] Length = 105 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR + Q E+ ++ ++S++SELE+GK T++ D + ++ D P+ L Sbjct: 1 MINRALKTIRLFHNIKQSELADKLCISKSYLSELESGKKTVSFDILEKYSNNFDIPVSSL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|329116195|ref|ZP_08244912.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906600|gb|EGE53514.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 128 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF +RKE +Q E+ + ++ IS+ E G+ T ++ + + Sbjct: 2 KLIFSQQLVKLRKEKHFSQDELAEKLFISRQAISKWERGEVTPDLAKIEQIGEVFGVTTE 61 Query: 79 KLL 81 LL Sbjct: 62 FLL 64 >gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] Length = 220 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++R L+Q+E+ R G S IS +E+ S ++ + + + L + Sbjct: 44 GNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 102 >gi|161521368|ref|YP_001584795.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352465|ref|YP_001948092.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|327198043|ref|YP_004306412.1| gp45 [Burkholderia phage KS5] gi|160345418|gb|ABX18503.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189336487|dbj|BAG45556.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|310657177|gb|ADP02292.1| gp45 [Burkholderia phage KS5] Length = 107 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R+ +Q + N G + S++SE+E+GK ++ + + + PL + Sbjct: 1 MLGRALKAMRQFHNQSQGALANTLGISNSYLSEIESGKKEPTLEILNRYSTVFNVPLSSI 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|160879107|ref|YP_001558075.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427773|gb|ABX41336.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 63 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+++ + G ++ IS +E G I+ I + L L +L Sbjct: 5 KLKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELF 61 >gi|91792424|ref|YP_562075.1| transciptional regulator [Shewanella denitrificans OS217] gi|91714426|gb|ABE54352.1| transcriptional regulator [Shewanella denitrificans OS217] Length = 195 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F+ +FR E + + + +R+G ++S IS++E+G+ + I + LA + L Sbjct: 18 LFIRSFRQANHE---SLQSLADRSGVSRSMISQIESGQKSPTIMILAKLADAMSISLEDF 74 Query: 81 LK 82 +K Sbjct: 75 IK 76 >gi|119716552|ref|YP_923517.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119537213|gb|ABL81830.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 89 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R++R + LT +E+ + +ISE+E G+ + + + L LD PL Sbjct: 5 RRLLGDVLRDLRMQRGLTLREVSAEARVSLGYISEIERGQKEASSELLASLCAALDVPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 DVLR 68 >gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 129 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK Q ++ G + IS E G T N+D+++ L L +LL Sbjct: 20 GVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 78 >gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 70 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ + +R+E +T +E+ + G +QS+I +E G + +I +A L+ L Sbjct: 3 EKPTMGERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDL 62 Query: 78 WKLLK 82 L++ Sbjct: 63 AALVE 67 >gi|291530986|emb|CBK96571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291551031|emb|CBL27293.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] gi|295104178|emb|CBL01722.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|3360504|gb|AAC27928.1| thermosensitive mutant immunity repressor [Bacillus phage phi105] Length = 147 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + IRKE KL Q ++ + ++S+++++E + ++ + +A L + Sbjct: 4 MTVGQRIKAIRKERKLIQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 63 Query: 80 LL 81 ++ Sbjct: 64 IV 65 >gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 85 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R +TQ E+ +++G + + I LE+GK T+++ + + LD Sbjct: 11 RNAIGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFAICKVLDVDPG 70 Query: 79 KLL 81 LL Sbjct: 71 VLL 73 >gi|288905859|ref|YP_003431081.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288732585|emb|CBI14157.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 136 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF+ N +RK +LTQ+++ + G ++ I++ ET + I N++ LA + + Sbjct: 4 QEIFMENLTWLRKINRLTQEQLALKVGVSRESIAKWETKRVEPAIKNLVKLAEVFNVGVD 63 Query: 79 KLL 81 KLL Sbjct: 64 KLL 66 >gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] Length = 262 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +RKE L+Q+ + + ++ IS+ E G+ + ++++ + + + Sbjct: 1 MAFGEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQGFPETEKLLMIGNIFEVSVDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|77919689|ref|YP_357504.1| transcriptional regulator Cro/CI family protein [Pelobacter carbinolicus DSM 2380] gi|77545772|gb|ABA89334.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER + + +R LTQ+E+ NR + +IS+LE + +I + + Sbjct: 2 ERNLNIGEKLKRLRMINSLTQEELGNRADLTKGYISQLENDTACPSIATLKDILDVFGVS 61 Query: 77 LWKLLK 82 + + Sbjct: 62 MQEFFT 67 >gi|71737053|ref|YP_274987.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557606|gb|AAZ36817.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 78 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F RN+R LTQ++ + ++++IS LE G + ++ + LA ++ Sbjct: 4 KEAFAEALRNMRLRKGLTQEDFGLVS--SRTYISSLERGMKGVTLEKVTQLADRMEVHPL 61 Query: 79 KLL 81 LL Sbjct: 62 SLL 64 >gi|48478177|ref|YP_023883.1| transcriptional regulatory protein [Picrophilus torridus DSM 9790] gi|48430825|gb|AAT43690.1| transcriptional regulatory protein [Picrophilus torridus DSM 9790] Length = 192 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +RK ++QKE+ + +G +QS+I+ LE G D + + L+ Sbjct: 6 EELRKMRKSLGISQKELASISGVSQSYIARLEKGDINPTYDKIKKIYEYLN 56 >gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 195 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R ++Q+E+ R G S +S +E GK + ++ ++ + + + Sbjct: 17 VGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLKKILDAIPMSVGDFF 76 Query: 82 K 82 Sbjct: 77 T 77 >gi|239978241|ref|ZP_04700765.1| transcriptional regulatory protein [Streptomyces albus J1074] Length = 190 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R E T + R+G +++ + ++E ++ +I ++ + L + LL Sbjct: 11 LARNVRHWRAERGFTLDALATRSGVSRNMLIQIEQARTNPSIATVVKIGDALGVSVTSLL 70 >gi|222087768|ref|YP_002546305.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725216|gb|ACM28372.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 13/91 (14%) Query: 5 KRDEPHLSDAILRE-------------RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWI 51 +R H + AIL++ M + R RK+ +T ++ + TG + + Sbjct: 11 RRSGAHDAKAILKQDPHALRDAKENNLEMAIGHEVRAYRKKLGITGADLASATGISLGML 70 Query: 52 SELETGKSTINIDNMIILAHTLDTPLWKLLK 82 S++E G ++ ++ + LA L P+ + Sbjct: 71 SKIENGNTSPSLTTLQSLARALGVPVTAFFR 101 >gi|241554132|ref|YP_002979345.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863438|gb|ACS61100.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 283 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 H + + + R R +Q ++ TG +Q IS +E+G+ST N+ Sbjct: 2 SSTHSPSSAVPNEL--GIQLRAWRDTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNL 59 Query: 67 IILAHTLDTPLWK 79 + LA LD PL + Sbjct: 60 LHLADALDVPLRE 72 >gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes 266] Length = 548 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK+ +TQ ++ +QS I +E+G ++++ + +A L++P+ Sbjct: 49 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 104 >gi|75910258|ref|YP_324554.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703983|gb|ABA23659.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 377 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IR ++Q+++ N + IS +E+G+ ++ + +A L + L Sbjct: 9 NNLKAIRTRLGMSQQDLANIASVTRQTISGVESGQYAPSVAIALRIAKALGCQVEDLF 66 >gi|85704021|ref|ZP_01035124.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671341|gb|EAQ26199.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 190 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT + G + W+S++E S +I ++ +A L P+ L Sbjct: 12 LGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSLLF 71 >gi|307824968|ref|ZP_07655190.1| helix-turn-helix domain protein [Methylobacter tundripaludum SV96] gi|307734015|gb|EFO04870.1| helix-turn-helix domain protein [Methylobacter tundripaludum SV96] Length = 92 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+ F +N RK +LTQ++ + +++++S LE G+ + +D + LA T+ Sbjct: 2 RVAFAKALKNARKSRELTQEDFSGVS--SRTYLSSLERGQKSPTLDKLQTLAQTIGI 56 >gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 294 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N ++ RK ++Q+E+ + + +S+ E G S + D +I +A+ LD + +L Sbjct: 1 MINENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSIPDADVLIEMANLLDVSVSQL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 118 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +RKE KLTQ++I G ++ IS+ E G + +N+ LA + P+ L Sbjct: 3 IIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R LT ++ + G ++ +S++ETG + +D + +A TL + Sbjct: 22 ESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMSA 81 Query: 80 LL 81 L Sbjct: 82 LF 83 >gi|120401475|ref|YP_951304.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954293|gb|ABM11298.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 180 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E +T ++ TG +S++S++E G+S +I + ++ L+ + +L Sbjct: 5 LRAVRQERGMTLDDLAADTGLTKSYLSKVERGQSVPSIAAALKISRALEVDVAQLF 60 >gi|291545509|emb|CBL18617.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 110 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 29/56 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + +R TQ+++ ++ G ++ + +E+G +++ +D + +A L Sbjct: 3 EMLGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGV 58 >gi|229003088|ref|ZP_04160940.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] gi|228758171|gb|EEM07364.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] Length = 67 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G T + D ++ +A TL+ + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRTPSQDFVVEVAKTLNISI 61 Query: 78 WKLL 81 +L+ Sbjct: 62 DELM 65 >gi|229815595|ref|ZP_04445922.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] gi|229808825|gb|EEP44600.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] Length = 312 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +R +TQ+ + G + +S+ E G ST ++D ++ L + L + Sbjct: 1 MSFRDNLLYLRDSRNMTQEHLAMLLGVTRQAVSKWEAGASTPDMDKLVRLCEIFEVDLDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LIR 63 >gi|187780140|ref|ZP_02996613.1| hypothetical protein CLOSPO_03736 [Clostridium sporogenes ATCC 15579] gi|187773765|gb|EDU37567.1| hypothetical protein CLOSPO_03736 [Clostridium sporogenes ATCC 15579] Length = 177 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK+ LT KE+ T + +IS LE ++ ++ N+ + L L + Sbjct: 1 MQLGEKIKYYRKKKDLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 80 LLK 82 +LK Sbjct: 61 ILK 63 >gi|284043470|ref|YP_003393810.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947691|gb|ADB50435.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 93 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRR + + E + R IR LTQ+ + + ++++ +E G+ Sbjct: 1 MPRRTQPAR---PPLGPEYVTLGRAVREIRARRSLTQEGLGRESALHRNYVGAIERGEIN 57 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + LA L+ L +L Sbjct: 58 PTFRILRKLAAGLNVELSELF 78 >gi|228984217|ref|ZP_04144399.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775504|gb|EEM23888.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 124 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLSEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 182 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLSGIPMSLVEFF 62 Query: 82 KP 83 P Sbjct: 63 SP 64 >gi|317132632|ref|YP_004091946.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470611|gb|ADU27215.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 74 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE L+Q ++ + +++ +S +E +++D + +A L+ + KL Sbjct: 12 LGLNIAYYRKERGLSQMQLADAIDISRTHMSRIENNDCAVSLDVIFSIADALNIAVEKLF 71 Query: 82 K 82 + Sbjct: 72 E 72 >gi|262370945|ref|ZP_06064269.1| RtrR protein [Acinetobacter johnsonii SH046] gi|262314307|gb|EEY95350.1| RtrR protein [Acinetobacter johnsonii SH046] Length = 68 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 26/46 (56%) Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 TQ+ + + G +S+I +E G+ + ++ + +A L+ + +LL Sbjct: 22 TQEALALQCGIDRSYIGRIERGEVNLTVEKLYEIATALEVDMKELL 67 >gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 169 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|228910198|ref|ZP_04074017.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228849481|gb|EEM94316.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 194 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +T +I TG ++ ++S++E K++ +I + +++ L+ PL LL Sbjct: 17 GSAIREIRQRRGITIAQICKGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75 >gi|257066099|ref|YP_003152355.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|325846472|ref|ZP_08169387.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|256797979|gb|ACV28634.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|325481230|gb|EGC84271.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 68 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ N+ + +RKE +Q+++ + G +++ IS +ETG+ +IL L+ Sbjct: 3 DKLVLKNHLKEVRKEKGYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|298491474|ref|YP_003721651.1| XRE family transcriptional regulator ['Nostoc azollae' 0708] gi|298233392|gb|ADI64528.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708] Length = 529 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 ++KR I + RK L+Q+E+ TG +QSWI ++E+G+ Sbjct: 456 KKKRRAIRSKKIIKSTDDLLAEQVIQARKSIDLSQRELAKLTGKSQSWIRDVESGRLKPK 515 Query: 63 IDNMIILAHTLDT 75 +++ I+L L+ Sbjct: 516 LEDQILLRKVLNI 528 >gi|224542817|ref|ZP_03683356.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM 15897] gi|224524261|gb|EEF93366.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM 15897] Length = 177 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+ T + + +TG +S++S++E G S +I + LAH + +L Sbjct: 6 AARLRSLRKKYGWTIESLALQTGLTKSYLSKVERGLSVPSIAVALKLAHAFKIDVEQLF 64 >gi|218510320|ref|ZP_03508198.1| transcriptional regulator [Rhizobium etli Brasil 5] Length = 206 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR + + G +++ + ++ETGKS+ + + +A L P L+ Sbjct: 25 GQNLRRIRTRRGYSLDRLAKIAGVSRAMLGQIETGKSSPTLSILSKIAVALGIPCAALI 83 >gi|330807428|ref|YP_004351890.1| transcription factor, Cro/Ci family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375536|gb|AEA66886.1| Putative transcription factor, Cro/Ci family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 81 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R R + +L+Q+ + + G +S + ++E G+ + N++ +A + Sbjct: 15 QLLGASIRARRLDMRLSQEALADLAGVDRSHMGKIERGERNVTFLNILRIAMAMQCKPSD 74 Query: 80 LLK 82 LL Sbjct: 75 LLT 77 >gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 212 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK ++Q+E+ + G ++ +S+ E+ +ST +++ +II++ +L Sbjct: 3 LAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQSTPDVEKIIIMSDYFGVTTDYIL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|303326045|ref|ZP_07356488.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302863961|gb|EFL86892.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 97 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 33/70 (47%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + I + +R++A L+Q ++ G ++ +IS +E G ++ M+ +A Sbjct: 2 EKIPTLQWAVAAVIHRLRRKAGLSQGQLAGLAGLSEDYISGMERGIQCGSLTAMLHIAAA 61 Query: 73 LDTPLWKLLK 82 L +L++ Sbjct: 62 LRMETAELVR 71 >gi|299770452|ref|YP_003732478.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298700540|gb|ADI91105.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 197 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R T + R ++S IS +E G+++ + LA+ L PL +L Sbjct: 9 AQQVRELRLARGYTLDILATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67 >gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis XB6B4] Length = 393 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + L Q E + G + +S+ E G+S +I+N+ +++ LD + Sbjct: 16 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 75 Query: 80 LL 81 L+ Sbjct: 76 LI 77 >gi|240138702|ref|YP_002963174.1| putative shikimate kinase with helix-turn-helix domain [Methylobacterium extorquens AM1] gi|240008671|gb|ACS39897.1| putative shikimate kinase with helix-turn-helix domain [Methylobacterium extorquens AM1] Length = 299 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R L++K + +G ++ +I++LE+G+ ++I + +A+ + L L+ Sbjct: 15 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLV 74 >gi|238917692|ref|YP_002931209.1| hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC 27750] gi|238873052|gb|ACR72762.1| Hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC 27750] Length = 98 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78 + N +N R++AKLTQ ++ + + S++S++E +++I + +A+ L + Sbjct: 30 VIGANIKNYREQAKLTQVQLAEQAKISISYLSKIEAAGCDKSLSISVLNQIANVLGVEIS 89 Query: 79 KLLK 82 + K Sbjct: 90 EFFK 93 >gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] Length = 403 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + L Q E + G + +S+ E G+S +I+N+ +++ LD + Sbjct: 26 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 85 Query: 80 LL 81 L+ Sbjct: 86 LI 87 >gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 479 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 15 ILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +R +F + +R++ LTQ + G + S+++ LE + + ++ LA Sbjct: 4 APTDRKLFLGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQRPVTAQVLLRLAEAY 63 Query: 74 DTPLWKL 80 D L L Sbjct: 64 DLDLKTL 70 >gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis] gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 120 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R R+ L Q E+ + G S IS ETG + DN+ ILA +LD L Sbjct: 14 VFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLRILADSLDVTTDYL 73 Query: 81 L 81 L Sbjct: 74 L 74 >gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616] gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616] Length = 270 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 R+ R+E L+Q ++ R G +Q+ I+ +E+G++ + +++ +A L P W Sbjct: 28 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVNPAW 84 >gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 67 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N+ + R A +QKE+ ++TG + +S +E G ++ + L H L+ L Sbjct: 1 MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDT 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|330982899|gb|EGH81002.1| DNA-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 83 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ++ +G ++++SE+E G + ++ + LA + +LL Sbjct: 8 GAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLELL 64 >gi|238018404|ref|ZP_04598830.1| hypothetical protein VEIDISOL_00230 [Veillonella dispar ATCC 17748] gi|237864875|gb|EEP66165.1| hypothetical protein VEIDISOL_00230 [Veillonella dispar ATCC 17748] Length = 129 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINI 63 R + + + + + +IR ++Q E+ + G ++S++S+LE G S +++ Sbjct: 12 RINTYEDPVLQHQYVCLGHKIAHIRISLNMSQYELAHHVGISRSYLSKLECGTGISGMSL 71 Query: 64 DNMIILAHTLDTPLWKLLK 82 + + +A + +L++ Sbjct: 72 EILFKIAEAFQIDVAQLVR 90 >gi|229526104|ref|ZP_04415508.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis VL426] gi|229336262|gb|EEO01280.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis VL426] Length = 207 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|226357938|ref|YP_002787678.1| transcriptional regulator, XRE Family [Deinococcus deserti VCD115] gi|226320181|gb|ACO48174.1| putative transcriptional regulator, XRE Family [Deinococcus deserti VCD115] Length = 129 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+E L K+I + ++S+LE G++ +++ + LA T + LL+ Sbjct: 5 ERLRELRQERGLRLKDIAGAAQISVPYLSDLERGRTNPSLETLQSLASTYGITVHDLLE 63 >gi|198275474|ref|ZP_03208005.1| hypothetical protein BACPLE_01639 [Bacteroides plebeius DSM 17135] gi|218264237|ref|ZP_03478109.1| hypothetical protein PRABACTJOHN_03799 [Parabacteroides johnsonii DSM 18315] gi|237727375|ref|ZP_04557856.1| transcriptional regulator [Bacteroides sp. D4] gi|255008827|ref|ZP_05280953.1| hypothetical protein Bfra3_06792 [Bacteroides fragilis 3_1_12] gi|313146571|ref|ZP_07808764.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|198271103|gb|EDY95373.1| hypothetical protein BACPLE_01639 [Bacteroides plebeius DSM 17135] gi|218222192|gb|EEC94842.1| hypothetical protein PRABACTJOHN_03799 [Parabacteroides johnsonii DSM 18315] gi|229434231|gb|EEO44308.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|313135338|gb|EFR52698.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 101 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ER F + RK+ K+TQ E+ + G +S+IS +E G I Sbjct: 21 KPGTPEREEFRKEAYAYCMGQIICDARKKEKMTQSELAEKIGTNKSYISRIEKGIVDPGI 80 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + L + +++KP Sbjct: 81 STFCRIIDALGLKI-EIVKP 99 >gi|187777825|ref|ZP_02994298.1| hypothetical protein CLOSPO_01417 [Clostridium sporogenes ATCC 15579] gi|187774753|gb|EDU38555.1| hypothetical protein CLOSPO_01417 [Clostridium sporogenes ATCC 15579] Length = 78 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I N + +R + L+ ++ +G ++ +S++E G+S I+ + +A+ L Sbjct: 6 IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV 60 >gi|183601014|ref|ZP_02962507.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] gi|188019351|gb|EDU57391.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] Length = 91 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +++R + + + + TG +Q IS E G + I+++++ A+ + + Sbjct: 10 LSVGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAKFANAFNVDIVV 69 Query: 80 LL 81 LL Sbjct: 70 LL 71 >gi|170759644|ref|YP_001785784.1| hypothetical protein CLK_3646 [Clostridium botulinum A3 str. Loch Maree] gi|169406633|gb|ACA55044.1| conserved domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ + G A+ I +E GK +++ I + L+ L L Sbjct: 4 KKIKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLF 61 >gi|153854486|ref|ZP_01995764.1| hypothetical protein DORLON_01759 [Dorea longicatena DSM 13814] gi|149753012|gb|EDM62943.1| hypothetical protein DORLON_01759 [Dorea longicatena DSM 13814] Length = 120 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F + R E LTQ+ + + G + +++ +LE K +++ TL+ Sbjct: 5 KTLFATLVKQGRMEMHLTQEALAEKLGISAAYLGDLERHKGGPSLELFCKTMQTLNISAD 64 Query: 79 KLLKP 83 + P Sbjct: 65 DYVYP 69 >gi|111020517|ref|YP_703489.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820047|gb|ABG95331.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 206 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ +LT ++ G + ++S++E ++ ++ ++ + L+ P+ L + Sbjct: 19 GPRLKAARQAQRLTLDDLAASCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLFE 78 >gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R +R ++ + + + G ++ + ++E G+ + + +A+ L P+ Sbjct: 17 KQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITA 76 Query: 80 LL 81 LL Sbjct: 77 LL 78 >gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R L+ E+ R+G AQS +S +E+G+ D + + L + + Sbjct: 4 GSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQRQPTFDVIERICSGLGLSVAEFF 62 >gi|317490707|ref|ZP_07949171.1| hypothetical protein HMPREF1023_02871 [Eggerthella sp. 1_3_56FAA] gi|316910192|gb|EFV31837.1| hypothetical protein HMPREF1023_02871 [Eggerthella sp. 1_3_56FAA] Length = 82 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R E +L+Q+ + G Q++IS LE G+ + + + +A L+ + Sbjct: 19 RKRLGNAVRVERVEQRLSQERLGRMVGTNQTYISLLEAGEINVTFNKLCRIAEALEVEVS 78 Query: 79 KLLK 82 L++ Sbjct: 79 DLVR 82 >gi|239945646|ref|ZP_04697583.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992116|ref|ZP_04712780.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449104|ref|ZP_06588494.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352051|gb|EFE78955.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 202 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + E R++R+ LT + R G + + +S LETG+ ++ ++ LA Sbjct: 5 DEGVPDELPGVAPRLRDLRRARGLTLETAAQRAGLSPAHLSRLETGRRQPSLPMLLGLAR 64 Query: 72 TLDTPLWKLL 81 T + +LL Sbjct: 65 IYGTTVSELL 74 >gi|170761110|ref|YP_001786101.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226948018|ref|YP_002803109.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|169408099|gb|ACA56510.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226842164|gb|ACO84830.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|322805053|emb|CBZ02613.1| yvao protein [Clostridium botulinum H04402 065] Length = 140 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F F+NIRKE L+Q+++ + + + IS +E+G+ + + + +A L +L Sbjct: 3 FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|116695076|ref|YP_840652.1| transcriptional regulator [Ralstonia eutropha H16] gi|113529575|emb|CAJ95922.1| transcriptional regulator [Ralstonia eutropha H16] Length = 245 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R F R RK T + +G + + IS E G+ + +N L L + Sbjct: 24 DRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERGQLALGYENFAALGQALQMDM 83 Query: 78 WKLL 81 + Sbjct: 84 GSMF 87 >gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 202 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E L+ ++ + G + +S++E G S++ + + LA LD L+ Sbjct: 19 VGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 78 >gi|322434732|ref|YP_004216944.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162459|gb|ADW68164.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 177 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R L+Q+++ R +++IS++E GK+ + ++ LA L+ + LL Sbjct: 65 VATAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALEVDISALL 124 Query: 82 K 82 + Sbjct: 125 R 125 >gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 113 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ L+QKE+ + G + +S E+G+ + + + LA + L L+ Sbjct: 3 LGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGERRPDYETLCKLADLYEVSLDYLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|293608302|ref|ZP_06690605.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828875|gb|EFF87237.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 197 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR T + +R ++S IS +E G+++ + LA+ L PL +L Sbjct: 9 AQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67 >gi|294146896|ref|YP_003559562.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677313|dbj|BAI98830.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 85 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 N K+ +TQ E+ R+G A S IS + G+ +D + LA Sbjct: 7 KRTSPLMTQLGANIARELKKLGITQGELSERSGVAASHISYMVRGQGNPTLDTLESLAGV 66 Query: 73 LDTPLWKLL 81 + +LL Sbjct: 67 FRLSVVELL 75 >gi|295676649|ref|YP_003605173.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295436492|gb|ADG15662.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 291 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 H + + R R ++Q ++ GF+Q IS +E+G+S D ++ Sbjct: 4 TSHDPKVQPGD---LGSLLRYWRDVRGVSQLDLSLEAGFSQRQISFIESGRSVPGRDTLL 60 Query: 68 ILAHTLDTPLWK 79 LA TLD PL + Sbjct: 61 TLAQTLDVPLRE 72 >gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] Length = 181 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R+E +L+ + + G + S IS++E GK + +I + + + L + Sbjct: 2 EQLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKVSPSIATLEKICNALGVHIAS 61 Query: 80 LL 81 L Sbjct: 62 LF 63 >gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 207 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A L +R+ R++R L+ + G ++S IS +E G+S+ + LA L Sbjct: 14 ASLNDRI--AQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGL 71 Query: 74 DTPLWKLLK 82 + PL L + Sbjct: 72 NVPLASLFE 80 >gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167] Length = 229 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 2 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 57 >gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863] Length = 229 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 2 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 57 >gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 220 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + F +RK LTQ E+ + +S E G +I+ + LA L L Sbjct: 2 DAKTFGAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGVGLPDINTLEPLADALGLTL 61 Query: 78 WKLL 81 L+ Sbjct: 62 ADLM 65 >gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 279 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 ++ F +N R +R+ +LTQ++ + G + ++ +E G++ + ++I ++ Sbjct: 4 AKLFFGSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIEAGRTENPSAVDLIKISDFFGLS 63 Query: 77 LWKLLK 82 + L + Sbjct: 64 IDNLFR 69 >gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 483 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R H+ R +R++ LTQ + G + S++++LE + Sbjct: 1 MKGGARRVSHVPKTFA------GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRP 54 Query: 61 INIDNMIILAHTLDTP 76 I + ++ LA D P Sbjct: 55 ITVSVLLALAERFDLP 70 >gi|254974906|ref|ZP_05271378.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092295|ref|ZP_05321773.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255100379|ref|ZP_05329356.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255306321|ref|ZP_05350492.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314033|ref|ZP_05355616.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255516713|ref|ZP_05384389.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255649812|ref|ZP_05396714.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|255655370|ref|ZP_05400779.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|260682970|ref|YP_003214255.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260686568|ref|YP_003217701.1| putative phage regulatory protein [Clostridium difficile R20291] gi|296451358|ref|ZP_06893096.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296880292|ref|ZP_06904257.1| conserved hypothetical protein [Clostridium difficile NAP07] gi|306519913|ref|ZP_07406260.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|260209133|emb|CBA62326.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260212584|emb|CBE03579.1| putative phage regulatory protein [Clostridium difficile R20291] gi|296259774|gb|EFH06631.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296428735|gb|EFH14617.1| conserved hypothetical protein [Clostridium difficile NAP07] Length = 65 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + RK +TQ ++ + G +IS++E G + ++ L+ + ++ Sbjct: 1 MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEV 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|237736107|ref|ZP_04566588.1| DNA-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229421818|gb|EEO36865.1| DNA-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 177 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK T K++ TG + ++S +E ++ +I+N+ + L L ++L Sbjct: 3 LGEKIKTIRKNKDYTLKQLSEITGLSIGFLSNIERDLNSPSINNLQQICSALGINLMEIL 62 >gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 203 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 27 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 85 >gi|170750171|ref|YP_001756431.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656693|gb|ACB25748.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium radiotolerans JCM 2831] Length = 294 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R L++K + +G ++ +I++LE G+ ++I + +A+ + L L+ Sbjct: 15 LGRRVRHARTVRGLSRKVLSQTSGLSERYIAQLEGGQGNVSIILLRRVANAMGVRLDDLI 74 Query: 82 K 82 Sbjct: 75 T 75 >gi|90416630|ref|ZP_01224561.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] gi|90331829|gb|EAS47057.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] Length = 192 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +RK+ KLT ++ +G ++S +S++E G++ + +A Sbjct: 10 PASQALSSRVTALRKKNKLTLDQLAGASGVSRSMLSQIERGQANPTLTVTFRIAQAFGMS 69 Query: 77 LWKLL 81 + +L+ Sbjct: 70 IGELV 74 >gi|312129639|ref|YP_003996979.1| transcriptional regulator, xre family [Leadbetterella byssophila DSM 17132] gi|311906185|gb|ADQ16626.1| transcriptional regulator, XRE family [Leadbetterella byssophila DSM 17132] Length = 472 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 I R+IF + R E + +E+ R + S+++E+E GK + ++ L L Sbjct: 2 KIDPIRLIFGLKLKQFRLEKGWSLQELSERVNISPSYLNEIEKGKKYPKTEKIVELGRIL 61 Query: 74 DTPLWKLL 81 L+ Sbjct: 62 GKDYNDLV 69 >gi|170748375|ref|YP_001754635.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654897|gb|ACB23952.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 208 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ E+ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 27 LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 86 >gi|15838321|ref|NP_299009.1| hypothetical protein XF1720 [Xylella fastidiosa 9a5c] gi|9106786|gb|AAF84529.1|AE003995_11 hypothetical protein XF_1720 [Xylella fastidiosa 9a5c] Length = 124 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + + Q+E+ + G +S + ++E G+ ++ ++ +A L +L+ Sbjct: 53 FGKAVRAFRMDQGVAQEELASMAGIERSHMGKIERGEHLPSLAVILKVAAALKMSGTELM 112 >gi|325971904|ref|YP_004248095.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027142|gb|ADY13901.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 190 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IR KLT + R+G +++ +S++E+ K + + +A L+ L L Sbjct: 6 MIGKNIQRIRNSRKLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKIARGLNVELNDL 65 Query: 81 L 81 L Sbjct: 66 L 66 >gi|307578025|gb|ADN53644.1| Stl [Staphylococcus aureus] Length = 278 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 25 YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 83 >gi|283469697|emb|CAQ48908.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus subsp. aureus ST398] gi|298693729|gb|ADI96951.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus ED133] Length = 261 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 8 YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66 >gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2] Length = 180 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 26/51 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ A +T ++ G +Q +S++E G+ ++ +A D P Sbjct: 5 IRSLRESAGMTLTDLSRMAGVSQGLLSQIERGRGNPAYLTLLKIAKAFDVP 55 >gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353] Length = 490 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE KLTQ ++ TG + IS LE+ T +ID + +A L+ + L + Sbjct: 17 RKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVLNFEVVDLFE 69 >gi|163851535|ref|YP_001639578.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium extorquens PA1] gi|218530345|ref|YP_002421161.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254561302|ref|YP_003068397.1| shikimate kinase with helix-turn-helix domain [Methylobacterium extorquens DM4] gi|163663140|gb|ABY30507.1| Shikimate kinase [Methylobacterium extorquens PA1] gi|218522648|gb|ACK83233.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium chloromethanicum CM4] gi|254268580|emb|CAX24537.1| putative shikimate kinase with helix-turn-helix domain [Methylobacterium extorquens DM4] Length = 299 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R L++K + +G ++ +I++LE+G+ ++I + +A+ + L L+ Sbjct: 15 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLV 74 >gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] Length = 293 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK+A L+Q+++ + G ++ I++ E G T +I N++ +A + +LL Sbjct: 5 EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQISVDELL 62 >gi|119962079|ref|YP_946843.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119948938|gb|ABM07849.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 191 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P I + R R+ +LT +++ + TG + ++S +E ++ ++ + Sbjct: 2 KALPVEPSNIPVA---IGSRIRAARQAQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58 Query: 66 MIILAHTLDTPLWKLL 81 ++ L L + L Sbjct: 59 LVTLCQVLSVSVGDLF 74 >gi|126698960|ref|YP_001087857.1| putative phage regulatory protein [Clostridium difficile 630] gi|115250397|emb|CAJ68219.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 65 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F NN + RK +TQ ++ + G +IS++E G + ++ L+ + ++ Sbjct: 1 MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEV 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|11094394|gb|AAG29617.1|AF217235_20 Orf20 [Staphylococcus aureus] Length = 267 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 14 YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 72 >gi|82750104|ref|YP_415845.1| pathogenicity island protein [Staphylococcus aureus RF122] gi|82655635|emb|CAI80031.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus RF122] Length = 261 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK KLTQ ++ RTGF+Q+ IS E G I ++ + I L P + L Sbjct: 8 YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66 >gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088] gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088] Length = 68 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 NN R R+E LTQ+++ G ++ I+ +ETGK ++ L+ P+ L KP Sbjct: 3 NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALFKP 62 >gi|323140942|ref|ZP_08075855.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414680|gb|EFY05486.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 78 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 9/71 (12%) Query: 21 IFVNNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIILAH 71 +F + ++ I RK +TQ+++ + G ++S +E G T +++ ++ +A Sbjct: 1 MFASRYKKICAKIVFYRKLKSMTQEKLADEVGITPQYLSRIENGGYTKCVSLSTLMKIAE 60 Query: 72 TLDTPLWKLLK 82 L + +L++ Sbjct: 61 KLGITMSELME 71 >gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 158 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 229 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +++R+E L+Q+++ + G A S I E+G+ N + + I+A + + LL Sbjct: 5 FSKSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQREPNYETLEIIADFFNVDMNYLL 64 >gi|308066906|ref|YP_003868511.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305856185|gb|ADM67973.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 66 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M R RK TQ+E+ RTG + + + +E G T++ D + ++A TL+ + Sbjct: 2 ENMQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNLIAQTLEIEV 61 Query: 78 WKL 80 +L Sbjct: 62 REL 64 >gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 82 KP 83 P Sbjct: 95 AP 96 >gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 10 VGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 69 >gi|254384422|ref|ZP_04999764.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] gi|194343309|gb|EDX24275.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] Length = 462 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R +R+EA L+Q ++ + S+IS LE GK T + + + +A L Sbjct: 3 ESQTLGSRIRRLRREAGLSQMDLAGE-NLSPSYISLLEAGKRTPSPEVLEQIAARLGCAP 61 Query: 78 WKLLK 82 +LL+ Sbjct: 62 GQLLE 66 >gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] Length = 501 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 24/66 (36%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + ER + R +RKE ++Q + + S+++++E + + + Sbjct: 12 ATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITA 71 Query: 72 TLDTPL 77 Sbjct: 72 AFGVDP 77 >gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 167 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + + RK +TQ E+ ++G S I + E+G+ D + +A L Sbjct: 4 RHSIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGIS 61 >gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 187 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R E ++ E+ G ++ +S LE G ++ + + L PL +L Sbjct: 15 VGRRIRSLRTERGISLSELARLAGVGKATLSGLENGVRNPRLETLYAITAQLGVPLTAVL 74 >gi|241762941|ref|ZP_04761003.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367893|gb|EER62112.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 81 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H +D +L R R ++Q+E+ +R+ +S++S +E G I ++ + Sbjct: 8 HANDPVLIA---LGAAIRRSRLARGISQEELAHRSAIDRSYMSSIERGGQNPGIVSVTRI 64 Query: 70 AHTLDTPLWKLL 81 A ++ + +L+ Sbjct: 65 ARAMEMTVTELM 76 >gi|168181316|ref|ZP_02615980.1| prolyl aminopeptidase [Clostridium botulinum Bf] gi|237793769|ref|YP_002861321.1| hypothetical protein CLJ_B0515 [Clostridium botulinum Ba4 str. 657] gi|182675351|gb|EDT87312.1| prolyl aminopeptidase [Clostridium botulinum Bf] gi|229264073|gb|ACQ55106.1| conserved domain protein [Clostridium botulinum Ba4 str. 657] Length = 65 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ + G A+ I +E GK +++ I + L+ L L Sbjct: 4 KKMKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLF 61 >gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 203 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 27 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 85 >gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter sulfurreducens KN400] Length = 212 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +TQK + G Q ++S +E G+ + +I L T + LL Sbjct: 12 LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERGRKVPSDTLVIALCRTYGVNVTWLL 71 Query: 82 K 82 + Sbjct: 72 Q 72 >gi|87119803|ref|ZP_01075700.1| transcriptional regulator, putative [Marinomonas sp. MED121] gi|86165279|gb|EAQ66547.1| transcriptional regulator, putative [Marinomonas sp. MED121] Length = 184 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ L+Q+++ R G S IS +ET + + ++ ++ + + L + Sbjct: 4 GERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRVSPSVSSLEKILAGMGMSLTEFF 62 >gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] Length = 155 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+E LTQ+E+ R + +S ETG + ID + ++A LD P+ +LL Sbjct: 8 LAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTRLL 63 >gi|188584668|ref|YP_001916213.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349355|gb|ACB83625.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 435 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E +TQ+E+ + F +S++S++E G + + I+A L+ PL + Sbjct: 9 GQKIKRARYEKDMTQEELAGK-DFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFYE 67 Query: 83 P 83 P Sbjct: 68 P 68 >gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 330 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I E N + RK+ KL+Q E+ + G A++ I E + NI ++ L+ ++ Sbjct: 2 IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMN 61 Query: 75 TPLWKLL 81 + LL Sbjct: 62 RSIDSLL 68 >gi|168210486|ref|ZP_02636111.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] gi|170711430|gb|EDT23612.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] Length = 199 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +TQ+++ ++ ++S I + E+ +N D + IL L+ L+ Sbjct: 2 ETLGKRIKKYRILKNMTQQQLADKLNKSKSTIQKYESDSVNLNTDTLNILCDVLNIDLFT 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 194 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R L+ + R+ ++S IS +E G+S+ + L+ L L L + Sbjct: 8 AQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGVTLASLFE 67 >gi|149916993|ref|ZP_01905494.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149822271|gb|EDM81662.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 115 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H+ L + +F R +R LTQ+E+ R+ + I LE K +++ + + Sbjct: 4 HVERPALDRKKLFAKRLRRLRANLGLTQEELAERSELSADTIRRLEGSKFNPSLETLHKI 63 Query: 70 AHTLDTPLWKLL 81 A L+ LL Sbjct: 64 AAGLEMSTGLLL 75 >gi|42523852|ref|NP_969232.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100] gi|39576059|emb|CAE80225.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100] Length = 188 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ +LTQ + G +S ++ +E+G ++ N+ + L +LL Sbjct: 11 LAAQITELRKKRQLTQAALAKLAGVPRSTLTNMESGMGNPSLVNLAKVCAALQVSFEELL 70 >gi|83950311|ref|ZP_00959044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83838210|gb|EAP77506.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 190 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +RK +T + + G + W+S++E S +I ++ +A L P+ Sbjct: 10 QTLGADLRALRKARGVTLAALADALGRSVGWLSQVERDLSEPSISDLRKMADVLGVPISM 69 Query: 80 LL 81 L Sbjct: 70 LF 71 >gi|315924082|ref|ZP_07920308.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622484|gb|EFV02439.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 67 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+++ + G ++ IS +E G I + + L L +L Sbjct: 5 RMKAARAARDLSQQQLADLVGVSRQTISAVEKGNYNPTIKLCVAICRALGKTLDELF 61 >gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 166 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IRK LTQKE+ + G +Q ++ E + + +A LD + Sbjct: 3 KSMGENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAIPKFKTLQNIADALDVSVGD 62 Query: 80 LL 81 ++ Sbjct: 63 II 64 >gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219] Length = 180 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LT +E+ +RT + ++S+LE +++ +I ++ +A L L + Sbjct: 5 GARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRTSPSIQSLADVAEALGVNLSGFFQ 64 >gi|226312433|ref|YP_002772327.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226095381|dbj|BAH43823.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRKE L+ + TG +++ + ++E GKS I + +A L L+ Sbjct: 9 GENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKSAPTITTLWKIASGLRLSFSSLI 67 >gi|253700194|ref|YP_003021383.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775044|gb|ACT17625.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 233 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R+E L+Q+++ + + +IS LE GK ++ ++ LA L + Sbjct: 5 EAFGIVIRRLRRERNLSQEKLSTASCLDRKFISNLEGGKQQPSLVSVFALAGALSSTASS 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|166033570|ref|ZP_02236399.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC 27755] gi|218280987|ref|ZP_03487577.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989] gi|166026755|gb|EDR45512.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC 27755] gi|218217758|gb|EEC91296.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989] Length = 100 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA+ E I + R + +TQK++ +TG Q+ IS +E G ++ + LAH Sbjct: 24 DALQPEYDII-QAMIDARVQQNMTQKDLSAKTGITQADISRIENGTRNPSLSMVKKLAHG 82 Query: 73 LDTPLWKLLKP 83 L L P Sbjct: 83 LGMQLKLEFVP 93 >gi|149275690|ref|ZP_01881835.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39] gi|149233118|gb|EDM38492.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39] Length = 71 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 38/63 (60%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + R +RK++ ++Q + + G +Q+ +S++E G+ +++ ++ LA L+ L+ Sbjct: 4 KIVLQRIRILRKKSGMSQLALAKKLGMSQNALSKIELGEIELSLSHLYQLADLLEIDLFD 63 Query: 80 LLK 82 L++ Sbjct: 64 LVR 66 >gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 210 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RKEA LT ++ R+G A S +S++E + + D ++ LA L + L+ Sbjct: 25 AARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTILSLAEGLGVDITHLVT 84 >gi|291545610|emb|CBL18718.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 118 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 9 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|262274204|ref|ZP_06052016.1| transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222014|gb|EEY73327.1| transcriptional regulator [Grimontia hollisae CIP 101886] Length = 210 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +R I R+ + IR LT +E TG A+S +S++E + + Sbjct: 16 ERAGTQADAPIAPLRL--GERLKEIRTNNGLTLEEASKLTGLARSTLSKIENEQISPTFQ 73 Query: 65 NMIILAHTLDTPLWKLLKP 83 M LA L+ + +L P Sbjct: 74 AMQKLAAGLNIDIPQLFAP 92 >gi|271966453|ref|YP_003340649.1| hypothetical protein Sros_5123 [Streptosporangium roseum DSM 43021] gi|270509628|gb|ACZ87906.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 198 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R R+ A L+ +E+ R ++ + LE + N+ ++ LA TL + L+ Sbjct: 11 VANNVRTARRRAGLSLEELGRRAQVSKGALVALEKAQGNPNLATLVRLADTLGISVSDLM 70 Query: 82 K 82 + Sbjct: 71 Q 71 >gi|225575526|ref|ZP_03784136.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] gi|225037276|gb|EEG47522.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] Length = 124 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M F + +R + L+Q+E+ R G Q I++ E ++ ++ + +A LD P Sbjct: 1 MTFGERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVPFD 60 Query: 79 KLL 81 L+ Sbjct: 61 NLV 63 >gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens] gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens] Length = 330 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I E N + RK+ KL+Q E+ + G A++ I E + NI +I L+ ++ Sbjct: 2 IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61 Query: 75 TPLWKLL 81 + LL Sbjct: 62 RSIDSLL 68 >gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 221 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R++ LT ++ + TG + S +S LE+G ++ ++ LA PL +L+ Sbjct: 36 VGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGGRRPTLELLLPLAREYQVPLDELV 95 >gi|313623764|gb|EFR93902.1| transcriptional regulator [Listeria innocua FSL J1-023] Length = 68 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+E+ ++ IS +E G ++ I + TL L L Sbjct: 5 KMKVARVEKDISQEELAKLINVSRQTISSVEAGNYNPTLNLCIAICKTLGKTLDDLF 61 >gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08] gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07] gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08] gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07] Length = 144 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N +++RK + TQ+E+ + ++ I++ E+G+S +I + I LA + L Sbjct: 2 KNMINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLD 61 Query: 79 KLL 81 L+ Sbjct: 62 DLV 64 >gi|288947745|ref|YP_003445128.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898261|gb|ADC64096.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 143 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q ++ +Q ++S+LE+G T +++ + LA + LL Sbjct: 5 RLKSARIARDLSQAQVATALDLSQGFVSKLESGDKTPSVELLQKLAKLYEVTESHLL 61 >gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str. EC4024] gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] Length = 229 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R LTQK + + G +Q+ I ++ETGK+ ++ +A+ L Sbjct: 2 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 57 >gi|153012131|ref|YP_001373341.1| cupin 2 domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151564019|gb|ABS17512.1| Cupin 2 conserved barrel domain protein [Ochrobactrum anthropi ATCC 49188] Length = 202 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 1 MPRRKRDE-PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP+ + E S+ + R R+ LT + +G + +S++E G Sbjct: 1 MPKVNKAEISPTSEPAPNDAGDIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLV 60 Query: 60 TINIDNMIILAHTLDTPLWKLLKP 83 + + + +A L +L+ P Sbjct: 61 SPTVRTLYTIAEVLSMSPAQLIDP 84 >gi|226314526|ref|YP_002774422.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226097476|dbj|BAH45918.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 31/52 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++R K T K+I +T + S++S++E GKS+I ++++ ++ L Sbjct: 9 IKSLRVGKKKTLKQIAEKTQLSISFLSQVERGKSSITLESLKKISEALGVSP 60 >gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 204 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 11 LSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 D E FR +R+ ++ +E+ ++G + IS++E + ++ + Sbjct: 3 DPDKPTPEDTPGAIGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRVLTA 62 Query: 69 LAHTLDTPLWKLL 81 + L+ P+ + Sbjct: 63 IRRALNVPMQVMF 75 >gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] Length = 359 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N+RK+ +Q+E+ R ++ +S+ E+G+S ++ +I ++ + Sbjct: 1 MTLSEKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESVPTLEKLIRISEIFEVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|205371967|ref|ZP_03224785.1| Xre family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 69 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK TQ++ G + S + E+E G + + + + L+ P L+ Sbjct: 6 WGRRIRAYRKLKGFTQEDFAKELGVSVSVLGEVERGNRMPSAELIHKVTEVLNIPYQDLI 65 Query: 82 KP 83 P Sbjct: 66 PP 67 >gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 330 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I E N + RK+ KL+Q E+ + G A++ I E + NI +I L+ ++ Sbjct: 2 IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61 Query: 75 TPLWKLL 81 + LL Sbjct: 62 RSIDSLL 68 >gi|148256143|ref|YP_001240728.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408316|gb|ABQ36822.1| putative transcriptional regulator, with HTH domain and a RmlC-like cupin domain [Bradyrhizobium sp. BTAi1] Length = 222 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D A + + R+ LT K++ +TG A S +S++E G ++ D + Sbjct: 3 DTAVSESASESPHSQLGHCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKL 62 Query: 67 IILAHTLDTPLWKLLKP 83 + L L + +L P Sbjct: 63 LQLTSGLQMDIAELFSP 79 >gi|118587639|ref|ZP_01545049.1| putative DNA-binding protein [Stappia aggregata IAM 12614] gi|118439261|gb|EAV45892.1| putative DNA-binding protein [Stappia aggregata IAM 12614] Length = 185 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++R+ +E+ RTG +++ +S +E G ++ + + LA + +L Sbjct: 8 LARRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAFGLSMAELF 67 >gi|86748264|ref|YP_484760.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571292|gb|ABD05849.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] Length = 232 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + P ++ L ER + R IR+E L+ ++ + + + +S++E G+ + ++ + Sbjct: 38 NAPQDTERSL-ERAL-GAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTL 95 Query: 67 IILAHTLDTPLWKLL 81 +A L+ PL L Sbjct: 96 QSIAGALNVPLSLLF 110 >gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88] gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88] Length = 136 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ K+TQ+E+ + G + S + ET + + +I +A L L Sbjct: 4 LLGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDARKPSYEVLIKIADYFKVSLDYL 63 Query: 81 LK 82 L+ Sbjct: 64 LR 65 >gi|302872695|ref|YP_003841331.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575554|gb|ADL43345.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 100 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R + L+QKE+ + G +Q+ +S+LE+G + + +A L L + + Sbjct: 41 QYRIKNNLSQKELAAKLGISQAMVSKLESGDYNPTVKMLYEIAQNLGFELEIVFR 95 >gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator ['Nostoc azollae' 0708] gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family ['Nostoc azollae' 0708] Length = 377 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN ++IR ++Q+E+ N + IS +E+G ++ + LA L + +L Sbjct: 9 NNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYAPSVAISLRLAKALGCQVEELF 66 >gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 348 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 1 MPRRKRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP+R A ++R + F +N + +R +TQ+++ G ++ +S+ E+ K+ Sbjct: 1 MPKR-------VGAKEKDRTMGFKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKA 53 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 +D +++L L L+ Sbjct: 54 YPEMDKLLMLCDMFGVSLDDLV 75 >gi|229125204|ref|ZP_04254327.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201] gi|228658251|gb|EEL13968.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201] Length = 80 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 M F + R+IRK+ +TQ+++ + F+ S IS +E GK ++ + + LA+ L + Sbjct: 1 MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSIN 60 Query: 79 KLL 81 +L Sbjct: 61 ELF 63 >gi|225352439|ref|ZP_03743462.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156946|gb|EEG70315.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 167 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R +TQ+++ G ++ IS+ E+ K+ +D +++L L Sbjct: 1 MSFKENLQYLRGSRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMLCDMFGVTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 212 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 82 KP 83 P Sbjct: 95 AP 96 >gi|145593721|ref|YP_001158018.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303058|gb|ABP53640.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 196 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + E+ RT + S IS +ETGK TI++D ++ LA L L Sbjct: 9 KVIRTRLRALRTTLGFSLDELAARTNLSPSTISRIETGKRTISLDVLLPLAAALHVDLDS 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|16519701|ref|NP_443821.1| transcription regulator; symbiotic plasmid stability locus [Sinorhizobium fredii NGR234] gi|2496605|sp|P55411|Y4DL_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dL gi|7465606|pir||T02775 y4dL protein - Rhizobium sp. plasmid pNGR234a gi|2182355|gb|AAB91641.1| transcription regulator; symbiotic plasmid stability locus [Sinorhizobium fredii NGR234] Length = 196 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ K++Q+E+ R+G QS IS++E G + +++ +A LD + Sbjct: 10 QQLRAAREAQKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALDLEIV 64 >gi|332300885|ref|YP_004442806.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177948|gb|AEE13638.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 355 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R +T +E+ ++ G + + IS LE G I +I L+ LD P+ Sbjct: 6 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPI 60 >gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026] Length = 161 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE LTQ+E+ + + IS E ++ + + +I++A T L +L+ Sbjct: 3 FNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAETFGVSLDELI 62 >gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 186 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G ++S IS +E G+S+ + LA L PL L Sbjct: 8 AERLRALRDARGWSLETLAEHSGVSRSNISLIERGQSSPTAVVLDKLATALAVPLSSLF 66 >gi|302544123|ref|ZP_07296465.1| transcriptional regulator, XRE family with cupin sensor [Streptomyces hygroscopicus ATCC 53653] gi|302461741|gb|EFL24834.1| transcriptional regulator, XRE family with cupin sensor [Streptomyces himastatinicus ATCC 53653] Length = 194 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LT +++ + + S +S +E G+ + + +A L PL +L+ Sbjct: 2 GRCIQGLRYDRGLTLQQLADTAEVSVSMLSSVERGQKAPTVVVLARIADGLGVPLAELVT 61 >gi|301164396|emb|CBW23954.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 101 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK A+LTQ+E+ NR G +S+IS++E G T + + +A + + L+ Sbjct: 42 GQILLDARKNARLTQEELANRIGADKSYISKIERGLITPTVSTLYRIAAAMGLSVE--LR 99 Query: 83 P 83 P Sbjct: 100 P 100 >gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +RKE L+Q+ + + + IS+ E G+ + ++++ + + + Sbjct: 1 MTFGEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQGFPETEKLLMIGNIFEVSIDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|260575082|ref|ZP_05843083.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259022704|gb|EEW25999.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 207 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R A + E + R +RK T ++ + G A+S +S++E G+ + + Sbjct: 11 RIAREDGAAAVVEPLNLGARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQMSPTYEA 70 Query: 66 MIILAHTLDTPLWKLLKP 83 + LA L + +L P Sbjct: 71 VKKLAEGLAITVPQLFTP 88 >gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] Length = 118 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +RKE KLTQ++I G ++ IS+ E G + +N+ LA + P+ L Sbjct: 3 IIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|148257853|ref|YP_001242438.1| putative phage-related transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410026|gb|ABQ38532.1| putative Phage-related transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 143 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ L+Q ++ R G Q ++SE+E G+ + ++ + LA L + L+ Sbjct: 68 LAFFRKKRGLSQDDLAKRVGITQGYLSEIEGGRKSGDVQTLRKLADALKVTIDSLV 123 >gi|65319741|ref|ZP_00392700.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 83 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 33/56 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++I N + IR++ KL+ +++ TG +++ I ++E G+S+ + + +A+ Sbjct: 20 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGFK 75 >gi|325121964|gb|ADY81487.1| hypothetical protein BDGL_000901 [Acinetobacter calcoaceticus PHEA-2] Length = 197 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR T + +R ++S IS +E G+++ + LA+ L PL +L Sbjct: 9 AQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67 >gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14] Length = 158 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G ST++ + + + + + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|315645456|ref|ZP_07898580.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315278934|gb|EFU42244.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 65 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q+E+ G ++ I +E GK ++ + + L L L Sbjct: 5 KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLF 61 >gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 197 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ T ++ TG + S +S LE G+ N++ ++ LA PL +L+ Sbjct: 15 VGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLDELV 74 >gi|308274330|emb|CBX30929.1| hypothetical protein N47_E44410 [uncultured Desulfobacterium sp.] Length = 124 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ + G + +++S++E GK ID + +A L + L+ Sbjct: 69 IRAWREHKMIKMNELAKKVGISSAYLSQIENGKRNPTIDTLKAIARELRVEIEVLI 124 >gi|282856547|ref|ZP_06265821.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] gi|282585613|gb|EFB90907.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] Length = 127 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +RK K+TQ+++ + T ++ +I LE+ + + ++ + LA L Sbjct: 1 MTLGLRIRTLRKALKMTQQQLADATEVSRIYIQALESNRRSPSMKLLHRLADKLGVETSD 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|269793680|ref|YP_003313135.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095865|gb|ACZ20301.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 190 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R +R T + +R + S +S +ETG I +D ++ +A L T L +L Sbjct: 9 IVRQRIRGLRLARGWTLDALASRCFLSASTLSRIETGHRRIALDQLVPIAQALGTTLDQL 68 Query: 81 LKP 83 ++P Sbjct: 69 VEP 71 >gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84] gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407] gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84] gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407] Length = 158 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G ST++ + + + + + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 182 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|260905597|ref|ZP_05913919.1| transcriptional regulator [Brevibacterium linens BL2] Length = 483 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + R RK+ LT E+ + G A S IS +E GK ++ + +A Sbjct: 10 DAEAEADTLSIGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAK 69 Query: 72 TLDTPLWKLLKP 83 L T + +L+ P Sbjct: 70 ALHTEVAELIDP 81 >gi|325289439|ref|YP_004265620.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324964840|gb|ADY55619.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 65 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ N G + I +E+G + I + L L L Sbjct: 4 KKLKIARIECDMSQEDLANIVGVTRQTIGLIESGNYNPTLKLCIAICKALHKNLNDLF 61 >gi|325271900|ref|ZP_08138357.1| helix-turn-helix domain-containing protein [Pseudomonas sp. TJI-51] gi|324102970|gb|EGC00360.1| helix-turn-helix domain-containing protein [Pseudomonas sp. TJI-51] Length = 93 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R +R LTQ++ + +++++S LE G + I + LA + Sbjct: 6 RESLGEALRRMRISHDLTQEDFAVVS--SRTYVSSLERGLKSPTIQKIEELAGRMGVHPL 63 Query: 79 KLL 81 L+ Sbjct: 64 SLI 66 >gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 225 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ + ++ G + +S++E G S+ ++ + LA + LL Sbjct: 33 LGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSASVKTLHQLAREFGVSVNTLL 92 Query: 82 K 82 + Sbjct: 93 R 93 >gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 314 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +++RK K+TQ+++ G +QS I +E+ K + + ++ LA D + L Sbjct: 1 MLGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESNKQGASNETLVKLAKLFDVTVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|326204926|ref|ZP_08194779.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984975|gb|EGD45818.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 110 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N + +RK+ K +Q+ + + Q IS E G NI+ + LA + Sbjct: 1 MSFSDNLKKLRKQYKYSQEYLAEKLKTTQQNISLYERGLVAPNIETLTQLADCFRVSVDY 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|223985502|ref|ZP_03635559.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM 12042] gi|223962519|gb|EEF66974.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM 12042] Length = 254 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ F + R++ ++TQK++ + + +S+ E G + +I ++ LA LD + Sbjct: 5 DKQQFGAFVADQRRQKQMTQKDLAQKLMISDKAVSKWERGLNMPDITLLVPLAQALDVSV 64 Query: 78 WKLLK 82 +LL+ Sbjct: 65 AELLE 69 >gi|168830123|gb|ACA34351.1| transcription regulator [Paenibacillus polymyxa] Length = 63 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R RK TQ+E+ RTG + + + +E G T++ D + I+A TL+ + + Sbjct: 1 MQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNIIAQTLEIEVRE 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 330 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I E N + RK+ KL+Q E+ + G A++ I E + NI +I L+ ++ Sbjct: 2 IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61 Query: 75 TPLWKLL 81 + LL Sbjct: 62 RSIDSLL 68 >gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE ++TQK++ ++ + +S+ E G S N+ +I +A L + +LL Sbjct: 9 FGHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELL 68 Query: 82 K 82 + Sbjct: 69 Q 69 >gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 65 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK A ++Q E+ R Q IS E G I+ + L+ ++L Sbjct: 3 LGENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELNASADEIL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|83593946|ref|YP_427698.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576860|gb|ABC23411.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 248 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + N R +R L+ + +G +++ + ++E G+S I + +A LD P Sbjct: 67 VVGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVP 122 >gi|332654987|ref|ZP_08420729.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516330|gb|EGJ45938.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 118 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LTQ+E+ + + + I+ +E G+ + + LA L L L+ Sbjct: 9 LGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ T ++ TG + S +S LE+G+ ++ ++ LA L +L+ Sbjct: 16 VGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKAYGVQLDELV 75 >gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 117 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ TQ E+ R G +S E G + ++ + LA L PL+KL+ Sbjct: 12 NIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLV 68 >gi|302338806|ref|YP_003804012.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301635991|gb|ADK81418.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 191 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + N + +RKE +LT + +G +++ +S++ET K I + +A Sbjct: 2 DPEQQPPQ---VGKNIQKVRKEKRLTLGHLSQVSGVSKAMLSQIETEKVNPTIATIWKIA 58 Query: 71 HTLDTPLWKLLK 82 L L LLK Sbjct: 59 QGLQISLNTLLK 70 >gi|256841360|ref|ZP_05546867.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737203|gb|EEU50530.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 109 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+R E + +A+ R+ + R E LTQ+++ R G ++ IS LE G S I Sbjct: 23 PKRDAFESDVDEALHAYRL--GEAIKKARIEQNLTQEQLGERIGVKRAQISRLERGYS-I 79 Query: 62 NIDNMIILAHTLDT 75 I M + L Sbjct: 80 TIPTMRRVFKALGV 93 >gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum ferrodiazotrophum] Length = 181 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +RK L+ + + + G + S +S++E+G+ + +I + + L+ P+ Sbjct: 2 KQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQVSPSIATLEKVCAALELPITT 61 Query: 80 LL 81 L Sbjct: 62 LF 63 >gi|222111450|ref|YP_002553714.1| XRE family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730894|gb|ACM33714.1| transcriptional regulator, XRE family [Acidovorax ebreus TPSY] Length = 271 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + H F R+ R+ +L+Q ++ + + +S +ETG+++ + D Sbjct: 2 QAMHHAPALSTPA--PFGERLRHWRQHRRLSQLDLAHAAEVSTRHLSCVETGRASPSRDM 59 Query: 66 MIILAHTLDTPLWK 79 ++ LAH LD PL + Sbjct: 60 VLRLAHRLDVPLRE 73 >gi|167574113|ref|ZP_02366987.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis C6786] Length = 191 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ KLT E G ++ ++S++E G++T +I +++ +A L + Sbjct: 16 GIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTM 70 >gi|145286424|gb|ABP52080.1| DNA-binding protein [Bacillus subtilis] Length = 129 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPL 77 + F + R +RK +LT ++ +G + +IS LETGK + LA + P Sbjct: 6 KFKFSDYLRQLRKMRQLTLEKAAEESGVSAGYISMLETGKKEYPTAKTLKKLAKAYNIPH 65 Query: 78 WKLLK 82 +LL Sbjct: 66 DQLLT 70 >gi|12746568|gb|AAK07492.1| hypothetical protein [IncJ plasmid R391] gi|20095202|gb|AAM08068.1| hypothetical protein [Providencia rettgeri] gi|262318118|dbj|BAI48444.1| hypothetical protein [Proteus mirabilis] Length = 106 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R R +Q+E+ R+G QS IS++E+G + I ++I LA LD L L+ P Sbjct: 10 ESLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLEL--LVAP 67 >gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 195 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+Q+E+ R G S IS +E + ++ ++ + + + + Sbjct: 6 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 65 >gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15] gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15] Length = 216 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + IR LTQKE + G Q ++S +E K T + +I L + + L Sbjct: 13 GRRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLIALCNLYEISPSWL 70 >gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor [Shewanella loihica PV-4] Length = 182 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK L+Q+E+ R G S IS +E + ++ ++ + L L Sbjct: 4 GANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 62 >gi|325289203|ref|YP_004265384.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964604|gb|ADY55383.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 117 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R +N R E LTQ+E+ A + +LE G +I+ + L L+ + Sbjct: 4 DRKRLGGAIKNARLENNLTQEELAELADIATVHMKQLEAGSRNPSIEVLYKLVRLLNLSV 63 Query: 78 WKLLKP 83 + P Sbjct: 64 DAVFFP 69 >gi|318081943|ref|ZP_07989252.1| hypothetical protein SSA3_35774 [Streptomyces sp. SA3_actF] Length = 167 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ L+ + R+G ++ +S LE G ++ + + L PL Sbjct: 2 GARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPL 56 >gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 232 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R K+TQ+ + R G +++ IS+ E+G + N N++ LA L + LL Sbjct: 4 ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGKNLVSLAKALGVTIEWLL 61 >gi|126741323|ref|ZP_01757000.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126717579|gb|EBA14304.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 189 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R +RK LT +I + W+S++E S +I ++ +++ L P Sbjct: 6 PQTATLGADIRALRKARGLTLTDIAGMLDRSVGWLSQVERDLSEPSISDLRQISNCLGVP 65 Query: 77 LWKLL 81 + L Sbjct: 66 MSMLF 70 >gi|85702861|ref|ZP_01033965.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671789|gb|EAQ26646.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 215 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 5/86 (5%) Query: 2 PRRKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 P + + ER R RK+ +T E+ N T + +S++E Sbjct: 6 PAKLVKLTQDPHKLRDEREKVLEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIEN 65 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLK 82 G ++ ++ + LA L PL K Sbjct: 66 GNTSPSLTTLQTLARALSVPLTAFFK 91 >gi|326388769|ref|ZP_08210357.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206743|gb|EGD57572.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 243 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R++ L+ ++ G + +S++E G+ + ++ ++ LA L+ P+ Sbjct: 54 KALGARVRQLRRQQDLSVADLAGAAGLSTGMLSKIENGQISASLTSIHSLALALNVPISS 113 Query: 80 LL 81 L Sbjct: 114 LF 115 >gi|291279358|ref|YP_003496193.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754060|dbj|BAI80437.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 186 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I RN+RK + ++ G +S+IS +E GK+ ++ + + + + + L Sbjct: 7 ILGEKLRNLRKSQGYSLNQLAKAVGKTKSYISMIENGKAVPSMATLKSITNFFNVTISDL 66 Query: 81 LK 82 L+ Sbjct: 67 LE 68 >gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 212 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 82 KP 83 P Sbjct: 95 AP 96 >gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 257 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE ++Q+ + + G + IS+ E + ++ ++ L++ + + LL Sbjct: 3 FGEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 199 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + ++ I TG ++S +S LE+G+ +++ ++ +A PL +L+ Sbjct: 14 VGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 73 >gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 130 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFKISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72] Length = 197 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ RKE L+Q ++ ++ IS E G + ++ N+++L+ + L K Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDVQNLLLLSKVFEVSLDK 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 181 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 26/56 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F R +R+E ++ +++ + IS++E + ++ + +A L+ + Sbjct: 3 FGFKIRKLRQEKSISIEQLAEMAKLSTGLISQVERNITGPSVTTLWKIAKALNVSM 58 >gi|300172874|ref|YP_003772039.1| PbsX transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887252|emb|CBL91220.1| transcriptional repressor of pbsx genes,putative [Leuconostoc gasicomitatum LMG 18811] Length = 154 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +RK LTQK++ ++ +++ ++ +ET K + + +A+ D P+ L Sbjct: 3 ITAQRIKQLRKIYGLTQKDLADKINSSRTNVARIETDKVHPSYPMLSTIANAFDVPIEYL 62 >gi|237794050|ref|YP_002861602.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229261462|gb|ACQ52495.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 140 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F F+NIRKE L+Q+++ + + + IS +E+G+ + + + +A L +L Sbjct: 3 FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|255656204|ref|ZP_05401613.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|296450362|ref|ZP_06892119.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878774|ref|ZP_06902775.1| probable regulatory protein [Clostridium difficile NAP07] gi|296260772|gb|EFH07610.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430202|gb|EFH16048.1| probable regulatory protein [Clostridium difficile NAP07] Length = 105 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK+A LT KE N G + +I+++E+GK ++ I L+ L+K Sbjct: 5 GKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVSILNISADVLIK 64 >gi|254391662|ref|ZP_05006860.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294812966|ref|ZP_06771609.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326441482|ref|ZP_08216216.1| hypothetical protein SclaA2_10473 [Streptomyces clavuligerus ATCC 27064] gi|197705347|gb|EDY51159.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294325565|gb|EFG07208.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 281 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E H + R + R RK KL+Q+E+ R + ++ ++E GK + Sbjct: 2 ESHDNPYTERPKDFIGEELRRRRKAHKLSQRELAARMFISGGYMGQIEVGKRRLT----E 57 Query: 68 ILAHTLDTPL 77 LA LD L Sbjct: 58 ELAERLDKEL 67 >gi|186685942|ref|YP_001869138.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468394|gb|ACC84195.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 377 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN ++IR ++Q+++ N + IS +E+G ++ + LA L + L Sbjct: 9 NNLKSIRTRLGMSQQDLANIASVTRQTISGVESGLYAPSVAITLRLAKALGCQVEDLF 66 >gi|331269964|ref|YP_004396456.1| helix-turn-helix domain-containing protein [Clostridium botulinum BKT015925] gi|329126514|gb|AEB76459.1| helix-turn-helix domain protein [Clostridium botulinum BKT015925] Length = 184 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I +N + IR + ++ + TG +++ + ++E G+S + + +A L Sbjct: 7 IIGSNLKTIRNQKNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVS 62 >gi|319442794|ref|ZP_07991950.1| hypothetical protein CvarD4_13644 [Corynebacterium variabile DSM 44702] Length = 99 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%) Query: 5 KRDEPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 ++ HLS+ LR + M R +R++ LTQ+++ + ++ + +E G+ + Sbjct: 5 PQNSAHLSETTLRRQRLRRMSLGAVIRVLRRQKGLTQQQLADAVEVSKRSVVRVEKGEQS 64 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 I +D A L LL+ Sbjct: 65 ITMDTFGRYADALGMRPSDLLR 86 >gi|238026838|ref|YP_002911069.1| putative helix-turn-helix transcriptional regulator [Burkholderia glumae BGR1] gi|237876032|gb|ACR28365.1| Putative helix-turn-helix transcriptional regulator [Burkholderia glumae BGR1] Length = 128 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R +LTQ + G ++ ++S++ET + D ++ +AH L+ + L++P Sbjct: 66 VRAWRNHRRLTQDALATAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVLIEP 123 >gi|163791661|ref|ZP_02186057.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873083|gb|EDP67191.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 170 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R +Q ++ + ++ IS+ E G S ++DN++ L+ + + + Sbjct: 1 MALGERLKASRVNKGYSQGDVADYLHISRQSISKWENGNSYPDLDNLVKLSTYYEVSIDE 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|56708846|ref|YP_164887.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680531|gb|AAV97196.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 204 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 2 PRRKRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P + DE +A+ + R+ RK+ LT +E +S +S++E ++ Sbjct: 3 PVQAEDEGLSPEALEAPDGETLGKMIRDARKDKGLTLEEAARSAAIGRSTLSKIENNQTR 62 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + D + L LD +L Sbjct: 63 PSFDIIRRLMQALDLETPQLF 83 >gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 76 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF +++R+E+ L Q+EI G Q+ S+ ETGKS N++N++ LA T Sbjct: 10 FIFPKRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKTTTDF 69 Query: 80 LL 81 LL Sbjct: 70 LL 71 >gi|328953825|ref|YP_004371159.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans DSM 11109] gi|328454149|gb|AEB09978.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans DSM 11109] Length = 415 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ F + R R+ A ++Q+ + + G S+I+ LE+G+ ++ LA L Sbjct: 6 KLHFGHLMRQSREAAGISQRALAQQAGLDVSYINRLESGERRPRRGTLLKLASALRITGQ 65 Query: 79 KL 80 +L Sbjct: 66 EL 67 >gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 200 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR++ T ++ +TG + S +S LE+G ++ ++ LA L +L+ Sbjct: 12 VGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGGRRPTLELLLPLARAHGVALDELV 71 >gi|238925355|ref|YP_002938872.1| hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656] gi|238877031|gb|ACR76738.1| Hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656] gi|291527628|emb|CBK93214.1| transcriptional regulator, XRE family [Eubacterium rectale M104/1] Length = 100 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R + LTQKE+ RTG Q+ IS+LE G ++ + LAH + L P Sbjct: 40 ARIKNNLTQKELAARTGIDQADISKLENGTRNPSLKLLKRLAHGMGMQLKIEFVP 94 >gi|229083930|ref|ZP_04216233.1| Transcriptional regulator [Bacillus cereus Rock3-44] gi|228699365|gb|EEL52047.1| Transcriptional regulator [Bacillus cereus Rock3-44] Length = 80 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + V+ + R + LTQ+++ + G + IS +E GK +++ + + + L+ L Sbjct: 13 ELAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLELCLNICYALNQTLND 72 Query: 80 LL 81 L Sbjct: 73 LF 74 >gi|325957710|ref|YP_004293122.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] gi|325334275|gb|ADZ08183.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] Length = 125 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R + +Q+E+ + ++ +S+ E+G+S ++D +++L++ D LLK Sbjct: 5 QKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYLLK 63 >gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 196 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E +T ++ TG + S +S LE+G ++ ++ LA PL +L+ Sbjct: 12 VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGGRRPTLELLLPLATAHQVPLDELV 71 >gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 150 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + IR+E KLTQ E+ N G +Q S ET K+ ++N++ LA+ +T Sbjct: 4 LGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNT 57 >gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] Length = 199 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +N RKE LTQ+ + ++ +S+ E G S ++DN++ L+ Sbjct: 32 FMIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGV 87 >gi|77543203|gb|ABA87016.1| hypothetical protein [Vibrio cholerae] gi|259156517|gb|ACV96461.1| transcriptional regulator, XRE family [Vibrio cholerae Mex1] Length = 106 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R R +Q+E+ R+G QS IS++E+G + I ++I LA LD L L+ P Sbjct: 10 KSLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLEL--LVAP 67 >gi|107100810|ref|ZP_01364728.1| hypothetical protein PaerPA_01001838 [Pseudomonas aeruginosa PACS2] gi|296390262|ref|ZP_06879737.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 185 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 14 AILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 ER N R +R +A L+Q+ + ++ + +E+G +++ + + Sbjct: 2 PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 61 Query: 70 AHTLDTPLWKLLK 82 A L L++ Sbjct: 62 AAALGVLFPDLVQ 74 >gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 215 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 38 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 97 Query: 82 KP 83 P Sbjct: 98 AP 99 >gi|240169857|ref|ZP_04748516.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 138 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP ++ +S R I + R R+ A+++ +++ R+G + ++S++E G Sbjct: 1 MPPEEKFGAKVSSVTSRASDI-GSFIRTQRETAQVSMRQLAERSGVSNPYLSQVERGLRK 59 Query: 61 INIDNMIILAHTLDTPLWKL 80 + D + +A L L Sbjct: 60 PSADVLAQIAKALRVSAEVL 79 >gi|227327673|ref|ZP_03831697.1| putative regulatory protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 97 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R R E +TQ+ + N G QS+++++E G+ +++ + +AH L Sbjct: 21 EYQSVIKTLREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDA 80 Query: 78 WKLLK 82 +L+ Sbjct: 81 STVLE 85 >gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 79 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + R EAKLTQ ++ +TG Q IS++E G +D + I+ L+ + Sbjct: 10 ILGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAKLDTLFIILSALNLDM 66 >gi|200387340|ref|ZP_03213952.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604438|gb|EDZ02983.1| helix-turn-helix domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 265 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + NN + +R + +TQ+E+ G +Q I +ETGK + + + LD PL Sbjct: 1 MLQNNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57 >gi|163797620|ref|ZP_02191569.1| Helix-turn-helix motif [alpha proteobacterium BAL199] gi|159177095|gb|EDP61657.1| Helix-turn-helix motif [alpha proteobacterium BAL199] Length = 262 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R++ ++Q ++ G +Q +S LETG++ + ++ LA LD PL Sbjct: 17 FGVLLRRWRRQRGVSQLDLALNAGTSQRHLSFLETGRARPSRYMVVALAGALDVPLRD 74 >gi|160942838|ref|ZP_02090078.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] gi|158445890|gb|EDP22893.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] Length = 110 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RKE T ++ R + +++ +LE G ++ I + LD L Sbjct: 4 LLGQRIREQRKEKGWTIEQFAERVDLSANYVGDLERGVKIPKLETFIRIVEVLDVSADVL 63 Query: 81 LK 82 ++ Sbjct: 64 IR 65 >gi|27376187|ref|NP_767716.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349326|dbj|BAC46341.1| bll1076 [Bradyrhizobium japonicum USDA 110] Length = 302 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 DA R R R +++K + +G ++ +I++LE+GK ++I + ++ Sbjct: 4 SPDAESRFLEQLGQRVRTTRALRGMSRKVLAKVSGISERYIAQLESGKGNVSIVLLRRVS 63 Query: 71 HTLDTPLWKLL 81 + L LL Sbjct: 64 DAMGAHLEDLL 74 >gi|328954168|ref|YP_004371502.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] gi|328454492|gb|AEB10321.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM 11109] Length = 172 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK+ +T +E+ R ++ ++++E G S I+ + L+ +L++ Sbjct: 9 IRTLRKKRGITAEELARRANLTRATVAKIEGGDSNPTIETIEALSSVFQLTSSELIR 65 >gi|296451497|ref|ZP_06893233.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880153|ref|ZP_06904120.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259672|gb|EFH06531.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428878|gb|EFH14758.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 196 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + ++T K++ +T + ++S+LE G +++ D++ +A LD L Sbjct: 8 GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 >gi|229821739|ref|YP_002883265.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567652|gb|ACQ81503.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 513 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 27/52 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ LTQ ++ R G +QS I+ +E G ++++ + + L+ L Sbjct: 18 IRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQNLSVELLTRINRALEADL 69 >gi|255655505|ref|ZP_05400914.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 194 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + ++T K++ +T + ++S+LE G +++ D++ +A LD L Sbjct: 6 GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60 >gi|254975050|ref|ZP_05271522.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092439|ref|ZP_05321917.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100520|ref|ZP_05329497.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306462|ref|ZP_05350633.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314177|ref|ZP_05355760.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516856|ref|ZP_05384532.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649957|ref|ZP_05396859.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306520039|ref|ZP_07406386.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|328887610|emb|CAJ68359.2| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 194 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + ++T K++ +T + ++S+LE G +++ D++ +A LD L Sbjct: 6 GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60 >gi|153833004|ref|ZP_01985671.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01] gi|156977184|ref|YP_001448090.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116] gi|269963350|ref|ZP_06177680.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3] gi|148870725|gb|EDL69631.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01] gi|156528778|gb|ABU73863.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116] gi|269831924|gb|EEZ86053.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3] Length = 207 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|126699098|ref|YP_001087995.1| putative transcriptional regulator [Clostridium difficile 630] Length = 197 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + ++T K++ +T + ++S+LE G +++ D++ +A LD L Sbjct: 9 GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 63 >gi|90577969|ref|ZP_01233780.1| putative transcriptional regulator, HTH_3family protein [Vibrio angustum S14] gi|90441055|gb|EAS66235.1| putative transcriptional regulator, HTH_3family protein [Vibrio angustum S14] Length = 208 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + ++ ++ I ++ + IR LT +E RTG A+S +S++E + + Sbjct: 11 PSMRIEKTQAAEHIAPLKL--GERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQISP 68 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 69 TFQAMQKLATGLAIDIPQLFEP 90 >gi|260683110|ref|YP_003214395.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686708|ref|YP_003217841.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209273|emb|CBA62609.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212724|emb|CBE03830.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 196 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + ++T K++ +T + ++S+LE G +++ D++ +A LD L Sbjct: 8 GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 >gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK +T ++ T + ++S++E G + ++ ++ +A TL T LL Sbjct: 4 LGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMARPSMSSLFRIAQTLGTTQQGLL 63 >gi|296110966|ref|YP_003621347.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832497|gb|ADG40378.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 134 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R + ++Q++I ++ ++ IS E+G +T ++ N+I L D L L Sbjct: 5 LFPQQLKKYRTKLGMSQEDIADKLFISRQAISRWESGDATPDLTNLIKLTDIFDCSLDSL 64 Query: 81 L 81 + Sbjct: 65 V 65 >gi|260431789|ref|ZP_05785760.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260415617|gb|EEX08876.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 187 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+ + TG +++ + ++E G+S+ I + +A PL L+ Sbjct: 9 KLREVRAASGLSLAKAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFQMPLSALI 65 >gi|261344511|ref|ZP_05972155.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567421|gb|EFB72956.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 95 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ ++ K++ G +Q S E G+ I++D + +L+ Sbjct: 7 KSVGLKIRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSVEP 64 >gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 207 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 30 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 89 Query: 82 KP 83 P Sbjct: 90 AP 91 >gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56'] gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56'] Length = 202 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RK+ + L + + RN+RK+ LT K++ RTG + S +S++E +S+ +I Sbjct: 124 RKKGLARTPEEQL--HRVIGDTIRNLRKDKDLTLKQMARRTGLSVSLLSQIERAESSASI 181 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ +A L++ + L Sbjct: 182 SSLYKIAVALESRIQDLF 199 >gi|119716897|ref|YP_923862.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] gi|119537558|gb|ABL82175.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides sp. JS614] Length = 508 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R+ RK LTQ ++ + G +QS I+ +E G ++++ + + LD+ + L Sbjct: 10 GNLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQNLSLEMLARIGAALDSEIVAL 67 >gi|28867944|ref|NP_790563.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213969308|ref|ZP_03397446.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381369|ref|ZP_07229787.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302060988|ref|ZP_07252529.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302130560|ref|ZP_07256550.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851180|gb|AAO54258.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213925986|gb|EEB59543.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 90 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ LTQ++ +G ++++SE+E G + ++ + LA + + Sbjct: 5 KAIGAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLE 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +N RKE LTQ+ + ++ +S+ E G S ++DN++ L+ Sbjct: 1 MIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGV 55 >gi|322517691|ref|ZP_08070554.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322123679|gb|EFX95271.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 114 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ R LTQ+ + + G ++ IS +E G +D I + TLD W L+ Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISPIEKGDYNPTMDLYIAICKTLDQLFWGKLR 62 >gi|319937580|ref|ZP_08011985.1| DNA-binding protein [Coprobacillus sp. 29_1] gi|319807420|gb|EFW04029.1| DNA-binding protein [Coprobacillus sp. 29_1] Length = 177 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R +LT +E+ NR+ + ++S++E ++ +I + + L T L Sbjct: 4 GSKIKRLRIANQLTLEELANRSELTKGFLSQVERNLTSPSITTLEDILEALGTTLHDFF 62 >gi|300787758|ref|YP_003768049.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797272|gb|ADJ47647.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 411 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTP 76 +++ R+ L+Q + + G + W+S++E G+ I +D + LA L Sbjct: 6 DQLSIGERIAFYRRRRGLSQAVLADLVGRTEDWLSKIERGERDIRRLDVLADLARALRVT 65 Query: 77 LWKLL 81 L LL Sbjct: 66 LGDLL 70 >gi|294339778|emb|CAZ88140.1| putative lambda repressor [Thiomonas sp. 3As] Length = 159 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Query: 7 DEPHLSDAILRE-RMIFVNNFRN-------IRKEAKLTQKEIRNRTGFAQSWISELETGK 58 D+ S A L+E R NF +R A L+Q+++ + G+ Q +S E+GK Sbjct: 61 DQNADSAAQLQEGRKWVAENFYQDRPTLASLRLAAGLSQRQLGEKCGWEQPHVSRYESGK 120 Query: 59 STINIDNMIILAHTLDTPLWK 79 + + LA L L + Sbjct: 121 HEPTLTVAMTLAAALGVGLDR 141 >gi|291530670|emb|CBK96255.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 121 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R++R + ++Q E+ + + +SE+E GK+ + + + + L Sbjct: 10 KAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSADV 69 Query: 80 LLK 82 LL+ Sbjct: 70 LLR 72 >gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium fredii NGR234] Length = 196 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 30/55 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ K++Q+E+ R+G QS IS++E G + +++ +A LD + Sbjct: 10 QQLRAAREARKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALDLEIV 64 >gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] Length = 197 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R++RKE +TQ ++ N +S I++ E+ ++D + ++ + + L Sbjct: 1 MFGEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGIIPSVDTLQKISALFNVSIDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|220920643|ref|YP_002495944.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945249|gb|ACL55641.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 138 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R IRK LTQ+++++ TG QS+ISE+E+ + + LA L Sbjct: 80 LRAIRKHKGLTQQQLQDATGLPQSYISEIESSTKRASAEAKAKLAQALG 128 >gi|139440031|ref|ZP_01773344.1| Hypothetical protein COLAER_02383 [Collinsella aerofaciens ATCC 25986] gi|133774653|gb|EBA38473.1| Hypothetical protein COLAER_02383 [Collinsella aerofaciens ATCC 25986] Length = 78 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + +R +Q++ N +S+ + +E G+ +++ N+ +A + Sbjct: 12 QKSFGMRCKELRAGLGCSQEQFANLIEMDRSYYASIEVGRRNVSLSNLKKIADVFQITIS 71 Query: 79 KLLK 82 +L++ Sbjct: 72 ELMR 75 >gi|67078396|ref|YP_246013.1| DNA-binding protein [Bacillus cereus E33L] gi|66970702|gb|AAY60674.1| possible transcriptional regulator [Bacillus cereus E33L] Length = 143 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + R++ +Q+ + + ++ +S+ ETGK+ +I +I L+ + + Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPSIGVIIDLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6] Length = 177 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +E + N +++RK LTQ E G +++ +S E G S+++ + + I+ + Sbjct: 16 KEFAMIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75 Query: 77 LWKLL 81 ++ Sbjct: 76 YVDIV 80 >gi|330819140|ref|YP_004348002.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327371135|gb|AEA62490.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 204 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA + R + +R E KLT ++ G ++S +SE+E K+ I L + Sbjct: 20 DASIPPR--VGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNA 77 Query: 73 LDTPLWKLL 81 L L +L Sbjct: 78 LGISLDELF 86 >gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 256 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RKE TQ+++ + G + I E G++ I ++ L+ + + LL Sbjct: 6 NNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRADPRIQTLLKLSDLFNVSVDDLL 63 >gi|313887742|ref|ZP_07821424.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846351|gb|EFR33730.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 31/59 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ ++ R+E L+Q+++ ++ + IS+ E K+T + N+ L+ + Sbjct: 2 KIMYGEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDM 60 >gi|288871456|ref|ZP_06117657.2| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288863406|gb|EFC95704.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 222 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R E KL+Q+ + + G ++ +S+ ET +S N+ LA L Sbjct: 23 MSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKAKNLTELATVFHVGLSG 82 Query: 80 LLKP 83 L++P Sbjct: 83 LVEP 86 >gi|269216832|ref|ZP_06160686.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269129639|gb|EEZ60723.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 200 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ + L+Q+++ + ++ +S+ E +S+ + DN+I LA + +LL Sbjct: 6 AKRLYEYRRASGLSQEQVAAKISVSRQAVSKWECAESSPDTDNLIALAMLYGVTVDELL 64 >gi|269102614|ref|ZP_06155311.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162512|gb|EEZ41008.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 220 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + R + ++QK++ + G+ S +S E+G +I++D+ LA L Sbjct: 3 KKTEVGLRLKQFRAKRGISQKDLADLCGWGASRVSNYESGIRSISLDDADTLAKHLGIKA 62 Query: 78 WKLL 81 +++L Sbjct: 63 YQIL 66 >gi|298207442|ref|YP_003715621.1| DNA-binding protein, putative [Croceibacter atlanticus HTCC2559] gi|83850078|gb|EAP87946.1| DNA-binding protein, putative [Croceibacter atlanticus HTCC2559] Length = 75 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N +R+E +++Q ++ + +S +E G+ I + +A+ L+ Sbjct: 12 VGENIAKLRREKEMSQMDVCAIIDMDKPNLSAIENGRQNATILTLKKIANALEV 65 >gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 158 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G ST++ + + + + + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|297203904|ref|ZP_06921301.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148527|gb|EDY57126.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 234 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E L + + G + S +S++ETGKS ++ + + L + L Sbjct: 34 GARIRQARLERGLGLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVEALF 92 >gi|293402146|ref|ZP_06646285.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304538|gb|EFE45788.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 69 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E++I N+ +++R E KL+Q ++ G +++ IS +ETG+ +IL LD Sbjct: 1 MKEQLILKNHIKDVRSEKKLSQSQLAELVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|227112883|ref|ZP_03826539.1| transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 96 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + ++ G +S + ++E G+ + + +A TL + L+ Sbjct: 25 FGAAVRALRVERGVAQETLAHQAGIERSHMGKIERGEHMPTLAIIFKIARTLGLSVAHLM 84 >gi|163867793|ref|YP_001608997.1| hypothetical protein Btr_0553 [Bartonella tribocorum CIP 105476] gi|161017444|emb|CAK01002.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476] Length = 217 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +RK+ LTQ ++ + G Q I LE G+ + + LA L + LL P Sbjct: 4 IKKLRKDLGLTQVKLAEKAGTTQPQIKRLEKGERKLTKEWAEKLAPHLGVKPFNLLFP 61 >gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 200 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R +QS +S +E G+ + +D ++ +A LDT L +L Sbjct: 14 LVRKRIRALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARALDTTLDQL 73 Query: 81 LK 82 ++ Sbjct: 74 VE 75 >gi|41179224|ref|NP_958562.1| putative repressor [Lactobacillus prophage Lj965] gi|42518381|ref|NP_964311.1| Lj965 prophage repressor [Lactobacillus johnsonii NCC 533] gi|38731494|gb|AAR27440.1| putative repressor [Lactobacillus prophage Lj965] gi|41582666|gb|AAS08277.1| Lj965 prophage repressor [Lactobacillus johnsonii NCC 533] Length = 117 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R+ N+R++ ++Q E+ +TG ++ ++++E G ++ D + LA + Sbjct: 4 DRITLAKKIINLREDRNMSQIELSEKTGIERTALNKIERGTRKVSSDELKALAKAFNISS 63 Query: 78 WKLL 81 LL Sbjct: 64 DSLL 67 >gi|148259597|ref|YP_001233724.1| hypothetical protein Acry_0581 [Acidiphilium cryptum JF-5] gi|326402804|ref|YP_004282885.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401278|gb|ABQ29805.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] gi|325049665|dbj|BAJ80003.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 484 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 13 DAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D LRE +F R IR++ L Q++I R G + S+++++E + + L Sbjct: 6 DRPLREPKLFAGARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPRLAAPLCD 65 Query: 72 TLDTPLWKL 80 L PL +L Sbjct: 66 LLGIPLAEL 74 >gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 158 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++RK LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|327198606|ref|YP_004327350.1| phage repressor protein [Erwinia phage phiEt88] gi|311875300|emb|CBX44558.1| phage repressor protein [Erwinia phage phiEt88] Length = 236 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + F R RK L+QK + + G +Q+ I +LE GKS + +A L Sbjct: 2 KTTFAERLRVSRKNKGLSQKALGDLVGVSQANIQKLENGKSQ-STGYAAQIAEALGVS 58 >gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] Length = 197 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R +RKE L+Q + R G +Q+ +S+ ET K+ +I+ + LA LL Sbjct: 2 NKYRQLRKERNLSQANLAERLGVSQTAVSQWETDKNYPDINTIKQLADIYSVTTDYLL 59 >gi|237785704|ref|YP_002906409.1| HTH_3 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758616|gb|ACR17866.1| transcriptional regulator, HTH_3 family [Corynebacterium kroppenstedtii DSM 44385] Length = 145 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R R A +T +E+ + + ++SE+E G+ ++ + + + H L Sbjct: 54 PEPLLRETLGEALRAFRVRASMTLRELSDVASVSPGYLSEIERGRKEVSSELLASVCHAL 113 Query: 74 DTPLWKLL 81 + +L Sbjct: 114 GVRVSDVL 121 >gi|219855859|ref|YP_002472981.1| hypothetical protein CKR_2516 [Clostridium kluyveri NBRC 12016] gi|219569583|dbj|BAH07567.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 208 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N +NIRK+ +LT + + T + S + E+E G + I + +A L P Sbjct: 29 KSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIPFT 88 Query: 79 KLL 81 L+ Sbjct: 89 DLI 91 >gi|149921943|ref|ZP_01910386.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817205|gb|EDM76683.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 128 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +R F + +++R +TQ+++ R G + I LE + ++D + L Sbjct: 11 EPDRHRFGKHVKSLRMARGMTQEQLAERAGLSADTIRRLEHAGFSPSLDTLFKLC 65 >gi|153955445|ref|YP_001396210.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348303|gb|EDK34839.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 184 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N +NIRK+ +LT + + T + S + E+E G + I + +A L P Sbjct: 5 KSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIPFT 64 Query: 79 KLL 81 L+ Sbjct: 65 DLI 67 >gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] Length = 247 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + IR L+Q+ ++ + E G+S ID +I +A+ + L Sbjct: 4 FGKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSEPKIDTIIKVANYFSISIDDFL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|313899221|ref|ZP_07832739.1| cupin domain protein [Clostridium sp. HGF2] gi|312955982|gb|EFR37632.1| cupin domain protein [Clostridium sp. HGF2] Length = 177 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R + LT +E+ +R+ + ++S++E ++ ++ + + L T L K Sbjct: 4 GQKIRQLRTQNNLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLASFFK 63 >gi|302561872|ref|ZP_07314214.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302479490|gb|EFL42583.1| cro/CI family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ + ++E ++ +I ++ + L + Sbjct: 19 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSVTT 78 Query: 80 LL 81 LL Sbjct: 79 LL 80 >gi|262225381|ref|YP_003280872.1| pCQ3_23 [Streptomyces sp. W9] gi|261597557|gb|ACX85524.1| pCQ3_23 [Streptomyces sp. W9] Length = 417 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTI-N 62 K +P D R+R F +RK+ +TQ+++ + G SW+S++E G I Sbjct: 3 KSSKPTGKDVDPRDRE-FGRRVAELRKDRGMTQQQLAAQLNGRTPSWMSQVERGIQPIRR 61 Query: 63 IDNMIILAHTLDTPLWKL 80 D + LA+ L L Sbjct: 62 FDLLRELANALGVSAQAL 79 >gi|254821249|ref|ZP_05226250.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 116 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REVIGDVLREARTAQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDALDVPLS 65 Query: 79 KLLK 82 +L Sbjct: 66 SVLT 69 >gi|224372182|ref|YP_002606554.1| helix-turn-helix protein [Nautilia profundicola AmH] gi|223588476|gb|ACM92212.1| helix-turn-helix protein [Nautilia profundicola AmH] Length = 272 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R+ L E+ +R G A+S + ++E K+ I+ + +A L P + Sbjct: 1 MTLGEKIKFFRENKGLNLSELASRAGVAKSTLFKIEENKTNPTINTIWAIAEVLGVPFGE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|148378733|ref|YP_001253274.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932356|ref|YP_001383119.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934660|ref|YP_001386669.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288217|emb|CAL82286.1| immunity repressor protein [Clostridium botulinum A str. ATCC 3502] gi|152928400|gb|ABS33900.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152930574|gb|ABS36073.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 140 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F F+NIRKE L+Q+++ + + + IS +E+G+ + + + +A L +L Sbjct: 3 FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens] gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens] Length = 344 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I E N + RK+ KL+Q E+ + G A++ I E + NI ++ L+ ++ Sbjct: 2 IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMN 61 Query: 75 TPLWKLL 81 + LL Sbjct: 62 RSIDSLL 68 >gi|116669150|ref|YP_830083.1| transcriptional regulator [Arthrobacter sp. FB24] gi|116609259|gb|ABK01983.1| transcriptional regulator [Arthrobacter sp. FB24] Length = 495 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+ P + + R++RK A +T ++ G A S +S +E GK Sbjct: 8 RKAATPPSSPATAELDVISLGRRVRHLRKAAAMTLDDLSAAVGTAPSQLSLIENGKREPK 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + LA L+ + +LL Sbjct: 68 LGLLQQLAAALNVSIDQLL 86 >gi|326330019|ref|ZP_08196333.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1] gi|325952227|gb|EGD44253.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1] Length = 106 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P R R R + T ++ G + ++SE+E G+ + + + Sbjct: 11 ALPDDDKPAPLWREAAGQVIREERSRQERTLADVAGDAGVSTQYLSEIERGRKEPSSEVL 70 Query: 67 IILAHTLDTPLWKL 80 + L L L Sbjct: 71 EAVGGALGLGLVDL 84 >gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 191 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 10 VGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDELV 69 >gi|167567036|ref|ZP_02359952.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis EO147] Length = 191 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ KLT E G ++ ++S++E G++T +I +++ +A L + Sbjct: 16 GIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTM 70 >gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 161 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+ R+ A+++ +++ + G + ++S++E G + D + +A L L Sbjct: 19 GSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVL 76 >gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316] gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316] Length = 158 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5] gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5] Length = 545 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK LTQKE+ + G +S+ ETG ++ + LA L+ + +LLK Sbjct: 6 GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSVDELLK 65 >gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] Length = 103 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK LTQ E+ R ++ IS E G S +++ ++ + L+T LL Sbjct: 6 FGEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLSYPSLETLVKICEILNTSSDYLL 65 >gi|317130529|ref|YP_004096811.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475477|gb|ADU32080.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 264 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 26/47 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +RK LTQ+++ + +++ S++ETGK D +A+ LD Sbjct: 8 KLRKSKGLTQEQVASAAFIDRAFFSQVETGKRNPGFDVAANIANVLD 54 >gi|239927456|ref|ZP_04684409.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 207 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P ++ E + R +R+ A LT + G + + +S LETG+ ++ ++ Sbjct: 5 SPSETEPPAGELPVVAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLL 64 Query: 68 ILAHTLDTPLWKLL 81 LA T T + +LL Sbjct: 65 SLARTYGTTVSELL 78 >gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] Length = 138 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R +RK+ KLTQK++ ++ S ET K T ++D+++ LA + L L+ Sbjct: 6 LANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFYNVNLDSLV 65 >gi|150378020|ref|YP_001314615.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032567|gb|ABR64682.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 219 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 33 MAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLTTLQALSKALGVPLTA 92 Query: 80 LLK 82 + Sbjct: 93 FFR 95 >gi|120403388|ref|YP_953217.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956206|gb|ABM13211.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 110 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R E T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REVIGDVLRRARVEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICGALDVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 RVL 68 >gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 91 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E++ + +R +TQ+E+ R ++S + +E+GK T + M + L Sbjct: 2 EQLPIGQAIKALRLAQNMTQEELIERADLSRSQLYYIESGKRTPRLPTMQSICSALSVSF 61 Query: 78 WKLL 81 + + Sbjct: 62 LEFV 65 >gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 158 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|303230899|ref|ZP_07317643.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] gi|302514412|gb|EFL56410.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] Length = 91 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 9 PHLSDAILRERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P ++ L+E+ + + R+ A LTQ+E+ R+G QS I+ +E G +ID + Sbjct: 17 PQYKESYLKEKAMLASAVAITKAREAAGLTQRELAERSGVPQSTIARIERG-YNTSIDTL 75 Query: 67 IILAHTLDT 75 +A L+ Sbjct: 76 SKIAFALNK 84 >gi|300313367|ref|YP_003777459.1| hypothetical protein Hsero_4081 [Herbaspirillum seropedicae SmR1] gi|300076152|gb|ADJ65551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 96 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F+ R R+ A + Q E+ G QS++S++ETG+ +++ +I L Sbjct: 11 KLFLKQLREARESANVKQTELSEALGEYQSYVSKVETGERRLDVIELIAWCEALGVEADD 70 Query: 80 LLK 82 +K Sbjct: 71 FVK 73 >gi|296156511|ref|ZP_06839349.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893110|gb|EFG72890.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 285 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R ++Q ++ R G +Q IS +E+G+S + ++ +A TLD PL + Sbjct: 19 LRHWRDIRGISQLDLSFRAGVSQRHISFIESGRSAPSRQMLMDIAQTLDIPLRE 72 >gi|226362736|ref|YP_002780514.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241221|dbj|BAH51569.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ +LT E+ G + ++S++E ++ ++ ++ + L+ P+ L + Sbjct: 19 GPRLKAARQAQRLTLDELAAGCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLFE 78 >gi|225180882|ref|ZP_03734330.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168363|gb|EEG77166.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 255 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +R+E LT +E+ + +++SE+E G+ T +I + ++ + P+ Sbjct: 70 GDKLRAMREEKGLTLEELGRHLDLSVTYLSEIELGERTPSIQTLQKISRYFNVPI 124 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +TQK++ N + +++LETGK ++ + ++ L + L+ Sbjct: 138 GKKIRMTRETKGMTQKQLANAAQISPGLVAQLETGKVQPSLKTIERISKALSVSVCYLI 196 >gi|254509760|ref|ZP_05121827.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533471|gb|EEE36459.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 172 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK LT EI + G + W+S++E S +I ++ +A L P+ L Sbjct: 1 MRKARGLTLTEIAAKLGRSVGWLSQVERDMSAPSISDLRQIAECLGVPMSMLF 53 >gi|254489648|ref|ZP_05102850.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214041818|gb|EEB82459.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 189 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R A+L+Q + +G ++ I +ETG + I++ ++ LA L L+ Sbjct: 17 VSENLKVHRLAARLSQSALAEASGISRRMIVAVETGDANISLSSLDKLAAALGLTFTDLI 76 Query: 82 K 82 + Sbjct: 77 R 77 >gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 131 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+ LTQK++ + G +QS +S++ETG+ I+I + + Sbjct: 36 GGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGEKNISIRVLTKIVAAFG 87 >gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+ + + G S IS +E+G++ ++ + + + L + Sbjct: 6 VGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEFF 65 >gi|21221318|ref|NP_627097.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|7635975|emb|CAB88810.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 281 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 S +I + R R IRK+A LT +E+ +R G+ +S S +E G++ + D++ Sbjct: 3 SSSSIQQARETLGKRLREIRKDAGLTARELASRAGWHESKCSRIENGRTPPSDDDL 58 >gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] Length = 180 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR L+Q+E+ R+G S IS++E ++ ++ + + + + Sbjct: 3 VGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEFF 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896] Length = 271 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R+E TQ+++ + + +S E + ++DN+I L LD L +++ Sbjct: 4 GMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLSAIVE 63 >gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24] gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24] Length = 198 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E +T + TG ++S +S LE+G+ ++ ++ LA D PL L+ Sbjct: 20 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLV 79 >gi|259502238|ref|ZP_05745140.1| transcription regulator [Lactobacillus antri DSM 16041] gi|259169856|gb|EEW54351.1| transcription regulator [Lactobacillus antri DSM 16041] Length = 212 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R TQ+E+ + G ++ IS E G+S +I ++ L+ L LL Sbjct: 3 FAEKIKQYRAHNNWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYQISLDDLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|257055764|ref|YP_003133596.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585636|gb|ACU96769.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 414 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLWKL 80 F N R IR + + G + S++S +E G+ ++ ++I LA LD + Sbjct: 27 FGANLRRIRTARGKSLDVVAGLAGISPSYLSRIERGERALDRRSLIAALARALDVTPADI 86 Query: 81 LKP 83 + P Sbjct: 87 VGP 89 >gi|305682108|ref|ZP_07404912.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266] gi|305658581|gb|EFM48084.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266] Length = 274 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 34/53 (64%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+EA LTQ ++ R G QS+IS+LE+G+ ++ ++ + +A +L +++ Sbjct: 18 REEAALTQSQLAQRLGKPQSFISKLESGERSLRVEELPQIAQSLGVSPLRIVT 70 >gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] Length = 225 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ R +A +TQKE+ + G + IS+ E GKS +I + L +L + Sbjct: 2 DQEKIGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKSMPDITYLETLCDSLAISM 61 Query: 78 WKLL 81 +L+ Sbjct: 62 NELI 65 >gi|160914687|ref|ZP_02076901.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] gi|158433227|gb|EDP11516.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] Length = 313 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ N R RKE L+Q+E+ + + IS+ ET S + D ++ +A L + + Sbjct: 18 LMLNENIRKYRKECGLSQEEMAVKLHVVRQTISKWETNLSVPDADMLVEIAKLLQVSVEQ 77 Query: 80 LL 81 LL Sbjct: 78 LL 79 >gi|153955561|ref|YP_001396326.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855954|ref|YP_002473076.1| hypothetical protein CKR_2611 [Clostridium kluyveri NBRC 12016] gi|146348419|gb|EDK34955.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569678|dbj|BAH07662.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + L+QK++ + G IS+ E K + ++ NM + L+ KL Sbjct: 3 GLNLKIERIKKGLSQKQLASMLGVTNQTISDYERCKISPSLSNMEKICKILNINPRKLF 61 >gi|75906669|ref|YP_320965.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700394|gb|ABA20070.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 529 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +++R I + RK L+Q+E+ TG +QSWI ++E G+ Sbjct: 456 KKQRRTAKSRQKIKTAGDLVGEQILQARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAK 515 Query: 63 IDNMIILAHTLDT 75 +++ +L L Sbjct: 516 LEDQTLLRKVLHI 528 >gi|307352662|ref|YP_003893713.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155895|gb|ADN35275.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 83 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R +TQ+E+ + + I+ +E GK +I+ +A P+ K+ Sbjct: 8 NRIKVYRAMHDMTQEELAEKIRVTRKTINSIERGKYNPSIEVAFKIAKIFRVPVEKIF 65 >gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor protein) [Burkholderia multivorans CGD1] Length = 257 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 IL + + R +AKL+Q+ + + G +Q I ++E+GK+ + ++ LA L Sbjct: 14 ILASMETLGSRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQGS-KHLAALARALG 72 Query: 75 TPLWKL 80 L Sbjct: 73 VSADWL 78 >gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] Length = 219 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 ++ + + + R++RK +T E+ + +Q ++S++E G S +I + + Sbjct: 26 VDANKLAKTDRSLGLDIRDLRKARGMTLSELSKISELSQGYLSQVERGISVPSIKALHSI 85 Query: 70 AHTLDT 75 + L Sbjct: 86 SRALGV 91 >gi|126737704|ref|ZP_01753434.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126721097|gb|EBA17801.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 207 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R +RK T + N+ G A+S +S++E G+ + D + LA L Sbjct: 21 ETEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYDALKKLAIGLQI 80 Query: 76 PLWKLLKP 83 + +L P Sbjct: 81 SVPQLFTP 88 >gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus abyssi GE5] gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5] Length = 192 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ R I + + IRKE +TQ+E+ + G Q++I++LE GK + + L Sbjct: 2 VIIPRPIDPRDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60 >gi|114330045|ref|YP_746267.1| transcriptional regulator, XRE family protein [Nitrosomonas eutropha C91] gi|114307059|gb|ABI58302.1| transcriptional regulator, XRE family protein [Nitrosomonas eutropha C91] Length = 100 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R E + Q+ + + G +S + ++E G+ N+ ++ +A L+ +L+ Sbjct: 25 FGMAVRAARTELGIAQETLAHLAGIERSHMGKIERGEHMPNLAIILRIARALNKSASELI 84 >gi|172058586|ref|YP_001815046.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991107|gb|ACB62029.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 139 Score = 51.9 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +RK+ + TQK + R G + IS E G+ N + LA L+T + Sbjct: 2 KRALGKKIMQLRKQHQYTQKHLAERCGETVTSISAYERGQRMPNTQTLERLALALNTTVI 61 Query: 79 KLLKP 83 L+ P Sbjct: 62 DLIDP 66 >gi|330445605|ref|ZP_08309257.1| hypothetical protein PMSV_530 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489796|dbj|GAA03754.1| hypothetical protein PMSV_530 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 47 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 27/43 (62%) Query: 40 IRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + TG ++S+IS +E G+ I++ N+ LA L+ L +L K Sbjct: 1 MADITGLSRSYISGIEQGERNISLSNINKLALGLNISLHELFK 43 >gi|291435798|ref|ZP_06575188.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291338693|gb|EFE65649.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 204 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P ++ E + R +R+ A LT + G + + +S LETG+ ++ ++ Sbjct: 2 SPSETEPPAGELPVVAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLL 61 Query: 68 ILAHTLDTPLWKLL 81 LA T T + +LL Sbjct: 62 SLARTYGTTVSELL 75 >gi|227508343|ref|ZP_03938392.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192161|gb|EEI72228.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ + + ++ +S E G+S N +I L+ + LL Sbjct: 4 LANKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIKVDDLL 63 Query: 82 K 82 K Sbjct: 64 K 64 >gi|126726502|ref|ZP_01742343.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126704365|gb|EBA03457.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 207 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + E + R +RK+ + T ++ N G A+S +S++E G+ + D + LA Sbjct: 16 DGETANAEPLDLGARVRQLRKDRQWTLEQAANHAGLARSTLSKIENGQMSPTYDALKKLA 75 Query: 71 HTLDTPLWKLLK 82 LD + +L Sbjct: 76 LGLDISVPQLFT 87 >gi|330823701|ref|YP_004387004.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329309073|gb|AEB83488.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 77 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 37/60 (61%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R+ R +L+Q+E+ +R G +++I++LE ++ + ++ +A L+ PL +L+ Sbjct: 11 FADELRSRRAALRLSQEELAHRAGINRTYIAKLELARNQPTLTVLLRVAEALEVPLPELI 70 >gi|319653368|ref|ZP_08007468.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2] gi|317394852|gb|EFV75590.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2] Length = 113 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R + + E+ + ++S++S +E G + ++ + +A TLD L Sbjct: 1 MIGGRIKTLRIKKGYSINELSEKAEVSKSYLSYIERGIQENPSLQVLSRIAKTLDANLED 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 134 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RK L QKE+ R G + +++S +E G+ ++D + + L PL +L Sbjct: 5 GSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLAEL 62 >gi|294139287|ref|YP_003555265.1| hypothetical protein SVI_0516 [Shewanella violacea DSS12] gi|293325756|dbj|BAJ00487.1| hypothetical protein [Shewanella violacea DSS12] Length = 239 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R + +Q E+ G QS++S+LE KS + D L L + + Sbjct: 1 MTLGQQLKQFRVDRGFSQPELAELAGIEQSYLSKLENDKSIPSNDIFRALLKALTITVEE 60 Query: 80 LL 81 + Sbjct: 61 FI 62 >gi|237722444|ref|ZP_04552925.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448254|gb|EEO54045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 100 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+AK+TQ E+ R G +S+IS +E+G++ + + + L Sbjct: 40 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 91 >gi|254254772|ref|ZP_04948089.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158] gi|124899417|gb|EAY71260.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158] Length = 199 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +RK+ T + + TG +S++S++E G S +I + L+ L + Sbjct: 17 RRSMTIRLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALGVDVE 76 Query: 79 KLL 81 +L Sbjct: 77 QLF 79 >gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 127 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+EAK++Q E+ + G Q +S E G ++D + +A+ + LL Sbjct: 2 NRIKELREEAKISQAELASILGVTQQALSNYENGLREPDLDTINKIANYFGVSIDYLL 59 >gi|300172749|ref|YP_003771914.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887127|emb|CBL91095.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 140 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + IR++ K++Q+++ + +S E GK +I N+I L+ D L + Sbjct: 1 MLIGEKIKIIREDRKISQEQMAKSLNVSGQAVSNWERGKGHPDISNIIRLSEIYDISLDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LIR 63 >gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] Length = 125 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R+ TQ + ++ G + +S LE+GK I+I+ +++ LD P+ ++L Sbjct: 18 GQRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPIEEILT 77 >gi|229080834|ref|ZP_04213352.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228702568|gb|EEL55036.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 262 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKKKGLSQEALAEKLSTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|225154906|ref|ZP_03723404.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] gi|224804436|gb|EEG22661.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] Length = 109 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L + I RE + F N R R +TQ+++ + +E G+ + ++ + Sbjct: 33 LPNEIQRETVRFGANVRRERVARAITQEKLSEMADMDIRTLQRIEAGEINPLLATVLRIQ 92 Query: 71 HTLDTPLWKLLKP 83 L+ P KL+ P Sbjct: 93 RALNCPWEKLMPP 105 >gi|167580827|ref|ZP_02373701.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 278 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + + R+ ++S IS +E +S+ + LA+ L L L Sbjct: 6 LIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASL 65 Query: 81 LK 82 + Sbjct: 66 FE 67 >gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+ + + G S IS +E+G++ ++ + + + L + Sbjct: 6 VGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEFF 65 >gi|146299497|ref|YP_001194088.1| helix-turn-helix domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153915|gb|ABQ04769.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101] Length = 493 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF + +R + L+ + T ++S+++E+E GK D +++L LD Sbjct: 9 KLIFGLKLKQVRTQKNLSLFGLAKLTNLSKSYLNEIEKGKKYPKTDKILLLCEHLDVTYD 68 Query: 79 KLL 81 +++ Sbjct: 69 QMV 71 >gi|90020028|ref|YP_525855.1| transcriptional regulator [Saccharophagus degradans 2-40] gi|89949628|gb|ABD79643.1| transcriptional regulator [Saccharophagus degradans 2-40] Length = 184 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 32/58 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RN R+ + + + +R+G ++S I+++E+ + + + + LA + L L++P Sbjct: 10 IRNYRQTNGESLQALADRSGVSRSMIAQIESNQKSPTVTTLAKLAGAMSISLGDLVEP 67 >gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5] gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5] Length = 182 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RKE ++Q+E+ G ++ +S+ E + + +N+I L L+ L Sbjct: 1 MTLGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTIPDTENVIQLGKILEVSLDY 60 Query: 80 LLKP 83 LLKP Sbjct: 61 LLKP 64 >gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 331 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI +RK+ +Q+E+ + G ++ +S+ E+G S +++ ++ L+ Sbjct: 1 MILAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSIPDLERILKLSQVFGVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|210620982|ref|ZP_03292367.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] gi|210154966|gb|EEA85972.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] Length = 204 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 31/55 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + ++T K++ +T + ++S+LE G +++ D++ +A L+ L Sbjct: 6 GAKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDL 60 >gi|331091961|ref|ZP_08340793.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402860|gb|EGG82427.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium 2_1_46FAA] Length = 133 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 35/69 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 A+ +E +I N R RKE + +Q+ + ++G + + IS +E G+ +++ + + Sbjct: 4 RAVSQELIILGNRIRECRKEREFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQKIVKA 63 Query: 73 LDTPLWKLL 81 L LL Sbjct: 64 LGVDANTLL 72 >gi|326384730|ref|ZP_08206407.1| helix-turn-helix domain protein [Gordonia neofelifaecis NRRL B-59395] gi|326196538|gb|EGD53735.1| helix-turn-helix domain protein [Gordonia neofelifaecis NRRL B-59395] Length = 265 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +L+Q ++ NR G + +S +E G+S D + LA LD PL + Sbjct: 11 GPQLRRWRQHRQLSQLQLSNRAGVSTRHLSWVENGRSRPTRDMIERLAGHLDVPLRE 67 >gi|313886599|ref|ZP_07820312.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923955|gb|EFR34751.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] Length = 363 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R +T +E+ ++ G + + IS LE G I +I L+ LD P+ Sbjct: 14 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPI 68 >gi|302557107|ref|ZP_07309449.1| DNA-binding protein [Streptomyces griseoflavus Tu4000] gi|302474725|gb|EFL37818.1| DNA-binding protein [Streptomyces griseoflavus Tu4000] Length = 212 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LT + G + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 24 VAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPTLLSLARTYGTTVSELL 83 >gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 197 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ A L+Q+++ + ++ +S+ E +++ + DN+I LA + +LL Sbjct: 6 AKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEASPDTDNLIALALLYGITVDELL 64 >gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7] gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7] Length = 138 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ RK+ L+Q+++ +R ++ +S+ E+ + NID ++ +A L+ L + Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 141 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK + TQ+E+ + ++ I++ E+G+S +I + I LA + L L Sbjct: 1 MINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + +S+ E G S + +IILA+ L+T + +L Sbjct: 1 MLNENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVPDSSMLIILANELNTTVSEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] Length = 246 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 R+ R+E L+Q ++ R G +Q+ I+ +E+G++ + +++ +A L P W Sbjct: 4 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVNPAW 60 >gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] Length = 100 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +++R KLT ++ G + ++S LE + + + + L L+ L + Sbjct: 1 MQFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNAKSPSFELLEKLCGALNITLAE 60 Query: 80 LLK 82 K Sbjct: 61 FFK 63 >gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24] gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 190 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E +T + TG ++S +S LE+G+ ++ ++ LA D PL L+ Sbjct: 12 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLV 71 >gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 210 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RK+ ++Q E+ ++ G Q + + E+GKS+ + + +A L+T Sbjct: 1 MSFSELLKQCRKKQGISQAELASKLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|253579357|ref|ZP_04856627.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849455|gb|EES77415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 68 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E++ N+ + +R EA L+Q ++ G +++ IS +ETG+ +IL LD Sbjct: 1 MKEQLQLKNHLKEVRTEANLSQAQLAEMVGISRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|225378376|ref|ZP_03755597.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] gi|225209813|gb|EEG92167.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] Length = 118 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE K+ Q E+ + + +S E G+ ++D I + L+ LL Sbjct: 9 GTRIKVRRKELKIKQAELAEALEISNNHMSSTENGRQKPSLDTFIGICRCLNVTPDYLL 67 >gi|239627441|ref|ZP_04670472.1| BcrR [Clostridiales bacterium 1_7_47_FAA] gi|239517587|gb|EEQ57453.1| BcrR [Clostridiales bacterium 1_7_47FAA] Length = 204 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R LTQ+++ + +++ IS+ E GK NI+++ ++ + +LL Sbjct: 3 FNEKLRQLRIGKNLTQEQLAEQLYVSRTAISKWEGGKGYPNIESLKCISKFFSITIDELL 62 >gi|170721531|ref|YP_001749219.1| helix-turn-helix domain-containing protein [Pseudomonas putida W619] gi|169759534|gb|ACA72850.1| helix-turn-helix domain protein [Pseudomonas putida W619] Length = 91 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R +R LTQ++ + +++++S LE G + I + LA + Sbjct: 4 RESLGEALRRMRILHDLTQEDFAVVS--SRTYVSSLERGLKSPTIQKIEELAGRMGIHPL 61 Query: 79 KLL 81 L+ Sbjct: 62 SLI 64 >gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C] gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C] Length = 145 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R++A+L+ +++ + G + ++S++E G + D + LA L L Sbjct: 15 LGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 73 >gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 184 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R +RK LT K + G + W+S++E G++T ++ ++ +LA L L Sbjct: 2 RHHVGDDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTLS 61 Query: 79 KLLK 82 + Sbjct: 62 FFFR 65 >gi|253578759|ref|ZP_04856030.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849702|gb|EES77661.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 98 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DA+ E I + R + +TQK++ +TG Q+ IS +E G ++ + LA Sbjct: 22 DALQPEYDII-QAMIDARVQQNMTQKDLSAKTGITQADISRIENGTRNPSLSMVKKLAQG 80 Query: 73 LDTPLWKLLKP 83 L L P Sbjct: 81 LGMQLKLEFVP 91 >gi|227509640|ref|ZP_03939689.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191002|gb|EEI71069.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR E + ++ +G ++ +S++E ++ I+ + + L+ P L Sbjct: 16 IVSTNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTAL 75 Query: 81 LK 82 L+ Sbjct: 76 LE 77 >gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 130 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|163839462|ref|YP_001623868.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952938|gb|ABY22453.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 200 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R A L+ E R G A+S +S+LE+G +++ + + L+ Sbjct: 23 RELVAAGLIRERARAGLSLSETARRAGIAKSTLSQLESGVGNPSVETLWAICTALEISFS 82 Query: 79 KLLKP 83 +L+ P Sbjct: 83 RLVDP 87 >gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 130 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +D P + ++ + R +R+ A L+ +++ N+TG + IS+LE ++ +I Sbjct: 10 PKDAPTIETDDAVDQRL-GETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIR 68 Query: 65 NMIILAHTLDTPL 77 + +L+ LD P+ Sbjct: 69 TLRLLSIALDVPI 81 >gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 190 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 10 VGPRLRRLRKDREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDELV 69 >gi|228475837|ref|ZP_04060551.1| DNA-binding protein [Staphylococcus hominis SK119] gi|314937266|ref|ZP_07844610.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|228270113|gb|EEK11573.1| DNA-binding protein [Staphylococcus hominis SK119] gi|313654620|gb|EFS18368.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 118 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK +Q E+ + ++ +S+ E+GK+ ++D +++++ L +L+ Sbjct: 3 LANVIKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|154252608|ref|YP_001413432.1| helix-turn-helix domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154156558|gb|ABS63775.1| helix-turn-helix domain protein [Parvibaculum lavamentivorans DS-1] Length = 126 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P P I R + + R R L+Q+E+ + G + ++SELE GK+T+ Sbjct: 47 PLATSTSPKPETPIQSFRNL-GDLVRTARITKDLSQQELADMAGVGRRFVSELENGKATL 105 Query: 62 NIDNMIILAHTLDTPLW 78 I ++ + L L Sbjct: 106 EIGRVLKVCQALGVDLV 122 >gi|114765327|ref|ZP_01444444.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542307|gb|EAU45336.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 206 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ G A+S +S++E G+ + D + LA L + +L Sbjct: 26 LGARVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALKKLAVGLGIGVPQLF 85 Query: 82 KP 83 P Sbjct: 86 TP 87 >gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533] gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533] Length = 161 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE LTQ+E+ + + IS E ++ + + +I++A T L +L+ Sbjct: 3 FNEQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRNLPDFEIIILIAETFGVSLDELI 62 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R E +TQ+ I G + S IS+ E ++ ++D++ L+ L + +L Sbjct: 7 FGARLKKYRNEKNITQERIAKILGVSNSMISKYENNTASPSLDSLCTLSKELCVSIDEL 65 >gi|284046640|ref|YP_003396980.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950861|gb|ADB53605.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 88 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ I E R +R L+Q+++ + ++++ +E G+ ++ L Sbjct: 1 MAAPISPEHRALGRAVRELRVRRGLSQEQLGMASEIHRNYVGAIERGEINPTFRVLLKLE 60 Query: 71 HTLDTPLWKLLK 82 LD L +LL+ Sbjct: 61 RGLDLSLSRLLE 72 >gi|260597676|ref|YP_003210247.1| DNA-binding transcriptional repressor PuuR [Cronobacter turicensis z3032] gi|260216853|emb|CBA30375.1| HTH-type transcriptional regulator puuR [Cronobacter turicensis z3032] Length = 185 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ + +G S IS +E K + I + L L + Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|255655872|ref|ZP_05401281.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|255306892|ref|ZP_05351063.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|209521228|ref|ZP_03269950.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209498341|gb|EDZ98474.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 195 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + + R+ ++S IS +E G+S+ + LA L+ PL L Sbjct: 6 LIARRIRELRDAQAWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASL 65 Query: 81 LK 82 + Sbjct: 66 FE 67 >gi|189499174|ref|YP_001958644.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] gi|189494615|gb|ACE03163.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] Length = 69 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 E+ I N + R + ++Q + R A I+++E G + ID + +A L Sbjct: 4 EKSIISGNIKKYRNKLGISQDVLSKRADLAFHTIAKIEAGATPNPTIDTVKKIADALGVS 63 Query: 77 LWKLLK 82 L L+K Sbjct: 64 LDVLMK 69 >gi|156934250|ref|YP_001438166.1| DNA-binding transcriptional repressor PuuR [Cronobacter sakazakii ATCC BAA-894] gi|156532504|gb|ABU77330.1| hypothetical protein ESA_02080 [Cronobacter sakazakii ATCC BAA-894] Length = 185 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ + +G S IS +E K + I + L L + Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630] gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196] gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291] gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196] gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|78044139|ref|YP_360516.1| prophage LambdaCh01, PBSX family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996254|gb|ABB15153.1| prophage LambdaCh01, transcriptional regulator, PBSX family [Carboxydothermus hydrogenoformans Z-2901] Length = 76 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + +RK LTQ E+ + G ++S+ ++E G +++ + +A L L P Sbjct: 2 NKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAILKVTPNDLFLP 61 >gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + +R E L+QKEI N G ++ ++ ETGKS + D + LA + Sbjct: 1 MLFNEIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 186 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ L+Q+E+ + G I +E +S + M ++ LD +L Sbjct: 5 GEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESEPRGNTMHLICKVLDIHAEDIL 63 >gi|289826007|ref|ZP_06545166.1| hypothetical protein Salmonellentericaenterica_11630 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 182 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R++ L+ EI R G A+S +S+LE G +++ + L LD PL Sbjct: 7 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPL 63 >gi|260062047|ref|YP_003195127.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] gi|88783609|gb|EAR14780.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] Length = 605 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N RK+ L+Q+E+ +T I +E G ++ + +LA L + Sbjct: 1 MTLGENLIYQRKKQGLSQEELAGKTQVTVRTIQRIEKGDVNPHLQTVKLLAAALSVEVED 60 Query: 80 LL 81 L+ Sbjct: 61 LM 62 >gi|124265218|ref|YP_001019222.1| putative DNA-binding protein [Methylibium petroleiphilum PM1] gi|124257993|gb|ABM92987.1| putative DNA-binding protein [Methylibium petroleiphilum PM1] Length = 81 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R++ + +Q+ + +R +S++ E+E G + ++ M LA LD L LL Sbjct: 8 FGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALDVRLSSLL 67 >gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ R RKE ++Q+E+ + G ++ ++ +E K + LA L T + L KP Sbjct: 3 NSIRERRKERGISQEELAGKCGVSRQTVNAIENNKYDPTLALAFHLAQELGTTVDGLFKP 62 >gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RKE +TQKE+ ++ +S+ E G I + LA L + L+ Sbjct: 7 GQLIRDLRKEKGMTQKELADKLHITDRAVSKWERGLCAPEISLLEPLAEALGCSVLDLM 65 >gi|153003797|ref|YP_001378122.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027370|gb|ABS25138.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 224 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + L+ + + + +G +++ + ++E G+S I+ + ++ L P L Sbjct: 43 VVGANLRRLRNQRGLSLERLSHLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSAL 102 Query: 81 LK 82 + Sbjct: 103 IT 104 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 36/66 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E R +RK LT +++ + G +++ +SE E+G+S + + +++LA L T Sbjct: 1 MTEAQHIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHT 60 Query: 76 PLWKLL 81 + LL Sbjct: 61 AVEYLL 66 >gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix motif [Cupriavidus metallidurans CH34] Length = 203 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 21 VGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 80 >gi|326803107|ref|YP_004320925.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650673|gb|AEA00856.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 85 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M + D I R++ + IR+E L+Q ++ + +G QS+IS +E+ + Sbjct: 1 MDTHREDLSLDEKNIARQQASIKASDVLLKIRQEKGLSQAQLADISGRKQSYISRVESRQ 60 Query: 59 STINIDNMIILAHTLD 74 I++ + + + + Sbjct: 61 QNISLGTLQEIVNAVG 76 >gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510] gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510] Length = 220 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ LT ++ G + +S++E G+ + ++ ++ LA L+ P+ L Sbjct: 37 LGVQIRSLRRHLDLTVADLAAAAGISTGMLSKIENGQISPSLASLQALAGALNVPITALF 96 >gi|282855783|ref|ZP_06265089.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] gi|282586415|gb|EFB91677.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] Length = 95 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++ +TQK++ TG Q IS LE G+ ++ + LA L L Sbjct: 36 EARRKKNVTQKQLAEMTGITQPDISRLENGRGNPSLRTLNNLAKGLGMAL 85 >gi|312194132|ref|YP_004014193.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311225468|gb|ADP78323.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 419 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++R+ A L+Q+E+ RTG + S + ++E G S ++ + +LA L L Sbjct: 11 NLRDLRRTAGLSQEELAGRTGLSVSTVRKVEQGGS-ARVETLHVLARALGVETSALF 66 >gi|225374624|ref|ZP_03751845.1| hypothetical protein ROSEINA2194_00240 [Roseburia inulinivorans DSM 16841] gi|225213534|gb|EEG95888.1| hypothetical protein ROSEINA2194_00240 [Roseburia inulinivorans DSM 16841] Length = 114 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R R+ +TQ E+ R + I +E G+ +++D + + H L++ Sbjct: 9 KIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSPMV 68 Query: 80 LL 81 L+ Sbjct: 69 LM 70 >gi|326405603|gb|ADZ62674.1| transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N + R KLTQ+E+ F++ IS E+ K+ N + +I LA ++ L Sbjct: 1 MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKAEPNFETLIALAELYESDL 57 >gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum H04402 065] Length = 130 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] Length = 143 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 M +R + K +Q+++ + ++ +S+ E+G++ ++D +I+L+ Sbjct: 7 KLSEVTSMNLNQKITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTKPDLDKIIVLSEI 66 Query: 73 LDTPLWKLLK 82 + LLK Sbjct: 67 FNVSTDYLLK 76 >gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 141 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LTQKE+ G +S + E G T + D + +A ++ L+ Sbjct: 3 VGERIRALRRSAGLTQKELAASIGLTESAVRNYELGLRTPSDDQLAAMADSIGVAPEALM 62 >gi|224535505|ref|ZP_03676044.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus DSM 14838] gi|224522872|gb|EEF91977.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus DSM 14838] Length = 69 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R IRK L+Q ++ T A I+ +ETG+ + ID + +A L L Sbjct: 5 DRERIGKRIAEIRKSKGLSQAKLAELTDIAPGNIARIETGRYSTGIDLLSKIADALGYKL 64 >gi|261405075|ref|YP_003241316.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929544|ref|ZP_08283268.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261281538|gb|ACX63509.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328936269|gb|EGG32718.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 65 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q+E+ G ++ I +E GK ++ + + L L L Sbjct: 5 KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLF 61 >gi|170756150|ref|YP_001780099.1| hypothetical protein CLD_0298 [Clostridium botulinum B1 str. Okra] gi|169121362|gb|ACA45198.1| conserved domain protein [Clostridium botulinum B1 str. Okra] Length = 65 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ + G + I +E GK +++ I + L+ L L Sbjct: 4 KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKVLNKTLNDLF 61 >gi|163761507|ref|ZP_02168579.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] gi|162281221|gb|EDQ31520.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] Length = 480 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R R +F R IR E LTQ + G + S+++++E + ++ ++ LA Sbjct: 1 MRARKLFIGGKIRAIRGEQGLTQAGFATKLGISTSYLNQIENNQRHVSASVLLALAEAFS 60 Query: 75 TPLWKL 80 + L Sbjct: 61 VDITTL 66 >gi|121587112|ref|ZP_01676888.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|153803456|ref|ZP_01958042.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|153827548|ref|ZP_01980215.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|153829053|ref|ZP_01981720.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|229514757|ref|ZP_04404218.1| hypothetical protein VCB_002409 [Vibrio cholerae TMA 21] gi|229527755|ref|ZP_04417146.1| hypothetical protein VCG_000827 [Vibrio cholerae 12129(1)] gi|254225954|ref|ZP_04919555.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V51] gi|254284909|ref|ZP_04959875.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|261212794|ref|ZP_05927078.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|262189992|ref|ZP_06048298.1| predicted transcriptional regulator [Vibrio cholerae CT 5369-93] gi|297579612|ref|ZP_06941539.1| transcriptional regulator [Vibrio cholerae RC385] gi|121548648|gb|EAX58698.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|124121006|gb|EAY39749.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|125621488|gb|EAZ49821.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V51] gi|148875482|gb|EDL73617.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|149738481|gb|EDM52877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|150424912|gb|EDN16689.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|229334117|gb|EEN99602.1| hypothetical protein VCG_000827 [Vibrio cholerae 12129(1)] gi|229348737|gb|EEO13695.1| hypothetical protein VCB_002409 [Vibrio cholerae TMA 21] gi|260837859|gb|EEX64536.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|262034133|gb|EEY52567.1| predicted transcriptional regulator [Vibrio cholerae CT 5369-93] gi|297535258|gb|EFH74092.1| transcriptional regulator [Vibrio cholerae RC385] Length = 207 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 253 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQK++ + + +S+ E G S N+ +I +A LD + +LL Sbjct: 9 FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 68 Query: 82 K 82 + Sbjct: 69 R 69 >gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 253 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQK++ + + +S+ E G S N+ +I +A LD + +LL Sbjct: 9 FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 68 Query: 82 K 82 + Sbjct: 69 R 69 >gi|282915693|ref|ZP_06323464.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] gi|282320509|gb|EFB50848.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus D139] Length = 143 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69 M F + R KL+ KE+ +G +Q++IS+LE GK +++ + L Sbjct: 1 MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNL 51 >gi|300024625|ref|YP_003757236.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526446|gb|ADJ24915.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 217 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ RK+A LT E+ + +S++E G+ + ++ + +LA L+ PL L Sbjct: 37 GHQVRHHRKQAGLTVAELAVAAQISPGMLSKIENGQISPSLSTLQMLAAALNVPLTVLF 95 >gi|221141220|ref|ZP_03565713.1| SaPI1 Orf22 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|282922345|ref|ZP_06330036.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|304381556|ref|ZP_07364206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269940394|emb|CBI48771.1| pathogenicity island DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282593471|gb|EFB98466.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|302750721|gb|ADL64898.1| Helix-turn-helix XRE-family like protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339919|gb|EFM05863.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 244 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69 M F + R KL+ KE+ +G +Q++IS+LE GK +++ + L Sbjct: 1 MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNL 51 >gi|169333659|ref|ZP_02860852.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] gi|169259653|gb|EDS73619.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] Length = 129 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK + TQ+ + + S S +E G + +++ +I + + L+ + ++L Sbjct: 9 GNRLKEIRKRERYTQENVAEFADISTSHYSHIENGTTKPSLNTLIRIVNVLNVSMDEVL 67 >gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] Length = 260 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQK++ + + +S+ E G S N+ +I +A LD + +LL Sbjct: 16 FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 75 Query: 82 K 82 + Sbjct: 76 R 76 >gi|153939354|ref|YP_001390095.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168178129|ref|ZP_02612793.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|152935250|gb|ABS40748.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|182670365|gb|EDT82339.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|295318188|gb|ADF98565.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 140 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F F+NIRKE L+Q+++ + + + IS +E+G+ + + + +A L +L Sbjct: 3 FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|108799092|ref|YP_639289.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119868207|ref|YP_938159.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126434698|ref|YP_001070389.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108769511|gb|ABG08233.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119694296|gb|ABL91369.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126234498|gb|ABN97898.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 104 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REVIGDVLRRARTSQGRTLREVSDTARVSLGYLSEVERGRKEASSELLSAICGALDVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 QVL 68 >gi|18266759|gb|AAC28967.2| orf22 [Staphylococcus aureus] Length = 247 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69 M F + R KL+ KE+ +G +Q++IS+LE GK +++ + L Sbjct: 4 MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNL 54 >gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IR+E L+ ++ + ++S ++++E G+ + + +A+ + L Sbjct: 34 LVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTL 93 Query: 81 L 81 + Sbjct: 94 I 94 >gi|291543302|emb|CBL16411.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 121 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R++R + ++Q E+ + + +SE+E GK+ + + + + L Sbjct: 10 KAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSADV 69 Query: 80 LLK 82 LL+ Sbjct: 70 LLR 72 >gi|260576097|ref|ZP_05844091.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259021796|gb|EEW25098.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 228 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R+ + R IRK LTQ+ + + G I ++E+G+ + + LA Sbjct: 2 ETMERDAKYIADQCRYIRKMFGLTQENLADAAGLTVRTIQKVESGRHMPEVQTLRSLARG 61 Query: 73 LDTPLWKLLKP 83 L + L+P Sbjct: 62 LGFDMAVFLRP 72 >gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 182 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IR+E L+ ++ + ++S ++++E G+ + + +A+ + L Sbjct: 7 LVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 I ++IR+ L+Q ++ G++ S I E G+ I+ D+ ++++ L Sbjct: 6 EIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVSPA 65 Query: 79 KLL 81 +L+ Sbjct: 66 ELM 68 >gi|154499841|ref|ZP_02037879.1| hypothetical protein BACCAP_03498 [Bacteroides capillosus ATCC 29799] gi|150271439|gb|EDM98696.1| hypothetical protein BACCAP_03498 [Bacteroides capillosus ATCC 29799] Length = 67 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 29/53 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R E ++Q ++ +Q +I+E+E+G+ ++D ++ + L+ ++ Sbjct: 8 IRQKRTEKGISQGKLAELVHVSQPFIAEIESGRKKPSLDVLMRICDALEISMF 60 >gi|149921925|ref|ZP_01910368.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817187|gb|EDM76665.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 111 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +RK L+Q+ + R G + I LE G + +++ ++ LA L L +L Sbjct: 12 FGKHLRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTFSPSLNTLVGLATGLGLRLSTIL 71 >gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IR+E L+ ++ + ++S ++++E G+ + + +A+ + L Sbjct: 7 LVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|124010294|ref|ZP_01694946.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] gi|123983628|gb|EAY24073.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] Length = 121 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ KL+QKE+ QS S++E GK+ + + L+ + +L Sbjct: 4 GDKIKKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNIEVAELF 62 >gi|114564581|ref|YP_752095.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114335874|gb|ABI73256.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] Length = 68 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+ RK ++Q ++ +S+ +E G+ I ++ LA L + +LL Sbjct: 8 FGAKLRDKRKTLGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCDVRELL 67 >gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 158 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ + G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 214 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RKE LT + + +R+G + ++S++E G S+I + + +A LD + Sbjct: 27 VVGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALGSVAKALDRSVADF 86 Query: 81 L 81 Sbjct: 87 F 87 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ R + +S+ E G S + D +I L+ L+TP+ L Sbjct: 1 MLSENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] Length = 110 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R+E +TQ+ I N S IS +E G++ ++ +I +A+ L Sbjct: 7 KVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRANPSLTALIKIANILS 61 >gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|153217261|ref|ZP_01951025.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124113716|gb|EAY32536.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] Length = 207 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|159898456|ref|YP_001544703.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891495|gb|ABX04575.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 80 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R +R ++TQ ++ R G + I+ +E GK ++ +AH PL + Sbjct: 5 ILSNRIRLLRFINGEMTQADLGQRIGVTRQTIAAIEAGKYAPTLEAAFRIAHVFQVPLDE 64 Query: 80 LLK 82 + + Sbjct: 65 VFQ 67 >gi|91780025|ref|YP_555233.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692685|gb|ABE35883.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 98 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ R R+ ++Q + +++++S LE GK T +D + +A + Sbjct: 4 RLGLARGLRAARRMRGISQDGLGVS---SRTYLSALELGKQTPTLDKLDEIARAIGVHPL 60 Query: 79 KLL 81 +L Sbjct: 61 SVL 63 >gi|24213211|ref|NP_710692.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45658873|ref|YP_002959.1| hypothetical protein LIC13047 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193932|gb|AAN47710.1| transcriptional regulator [Leptospira interrogans serovar Lai str. 56601] gi|45602118|gb|AAS71596.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 98 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE IF N RK +KLTQ E+ R G QS+IS++E+G+ +++ + L Sbjct: 8 REAKIFCKNLIAARKNSKLTQLEVAKRLGEPQSYISKIESGERRLDVIEFWRIFKILGKS 67 Query: 77 L 77 + Sbjct: 68 I 68 >gi|319652442|ref|ZP_08006558.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] gi|317395904|gb|EFV76626.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] Length = 181 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++R + T KE+ RT + S++S++E G +++ I ++ +A L+ + + + Sbjct: 6 KKIKDLRLQKGYTLKELSERTELSISFLSQVERGATSLAITSLKKIADALNVKISEFFE 64 >gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 210 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RK+ ++Q E+ +R G Q + + E+GKS+ + + +A L+T Sbjct: 1 MSFSELLKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510] gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510] Length = 221 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + LT + R+G ++S IS +E G+S+ + LA L L L Sbjct: 32 LATRLRALRADRGLTLDSLSERSGVSRSMISLVERGESSPTASVLDRLAAGLGVTLATLF 91 >gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733] gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733] Length = 149 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R F + +RKE TQ+E+ + + +S E G+S + +N+ LA L Sbjct: 2 RDFFPKKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTL 60 >gi|229162632|ref|ZP_04290592.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] gi|228620895|gb|EEK77761.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] Length = 117 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK LTQ+++ + +++ I+ E +++ ++ ++ + PL Sbjct: 5 EVFAQNLKELRKSRGLTQEQLGSELNLSRNQINNYENKLFEPSMETLLQISSFFNVPLDT 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|296137961|ref|YP_003645204.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026095|gb|ADG76865.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 108 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E + R ++ R R T E+ G + ++SE+E G+ + + + Sbjct: 15 EAQVPPRPPLLREVYGRVLRQERTRQGRTLAEVAREAGVSTQYLSEVERGRKEASSEVLS 74 Query: 68 ILAHTLDTPLWKLL 81 + L L + + Sbjct: 75 SVCDALGGSLIEFV 88 >gi|206973491|ref|ZP_03234411.1| conserved domain protein [Bacillus cereus AH1134] gi|229181778|ref|ZP_04309089.1| Transcriptional regulator [Bacillus cereus 172560W] gi|206731581|gb|EDZ48783.1| conserved domain protein [Bacillus cereus AH1134] gi|228601695|gb|EEK59205.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 65 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R E LTQ+E+ + + IS +E+ K ++ I +A TLD L KL Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLF 61 >gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] Length = 210 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RK+ ++Q E+ +R G Q + + E+GKS+ + + +A L+T Sbjct: 1 MSFSELLKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] Length = 267 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK+ L+Q+ + + + IS+ E G+S ++D + L+ + Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFNVSSDY 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|116617253|ref|YP_817624.1| XRE-family DNA-binding domain-containing protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096100|gb|ABJ61251.1| XRE-family DNA-binding domain and ATPase component of ABC transporter [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 296 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF +R++ L+Q+ I + ++ +S+ E G + +ID +I LA L L Sbjct: 4 IFSYQLNMLRQKKSLSQEIIAQKLYVSRQSVSKWERGDAEPDIDKLIALADIFGVDLNYL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 204 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ LTQ+++ + +++ +S+ E+GK NI+++ ++ + +LL Sbjct: 3 FNEKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKGYPNIESLKCISKVFAVSIDELL 62 >gi|227522811|ref|ZP_03952860.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090012|gb|EEI25324.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 198 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR E + ++ +G ++ +S++E ++ I+ + + L P L Sbjct: 16 IVSKNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLSVPYTAL 75 Query: 81 LK 82 L+ Sbjct: 76 LE 77 >gi|196044748|ref|ZP_03111982.1| transcriptional regulator, XRE family [Bacillus cereus 03BB108] gi|196024236|gb|EDX62909.1| transcriptional regulator, XRE family [Bacillus cereus 03BB108] Length = 81 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R + ++Q+ + +G +++IS LE GK I+ + + + L +++ Sbjct: 7 FGIVLQKERIKQNISQETLAFNSGLDRTYISLLERGKRKPTINTVFSVTYALKLEPHEII 66 >gi|254249607|ref|ZP_04942927.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124876108|gb|EAY66098.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 195 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 19 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 75 >gi|282167199|ref|YP_003358063.1| TrbA [Burkholderia cepacia] gi|70779365|gb|AAZ08145.1| TrbA [Burkholderia cepacia] Length = 107 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 28/48 (58%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +T+ ++ + G + S++S+L GK+ ++ M +A L PL LL+ Sbjct: 1 MTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPTLLE 48 >gi|53720319|ref|YP_109305.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167817109|ref|ZP_02448789.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|237813540|ref|YP_002897991.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|254299001|ref|ZP_04966451.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52210733|emb|CAH36717.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|157809113|gb|EDO86283.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|237503057|gb|ACQ95375.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 195 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R + + R+ ++S IS +E +S + LA+ L L L + Sbjct: 8 ARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFE 67 >gi|328956484|ref|YP_004373870.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] gi|328672808|gb|AEB28854.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] Length = 172 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R + +Q ++ ++ IS+ E G S ++DN+ L+ D + + Sbjct: 1 MVLGERLKQSRMNKRYSQGDVAKHLHISRQSISKWENGNSYPDLDNLAKLSTYYDVSIDE 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 222 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R R + + E+ TG S IS++E + +I + + ++ P+ Sbjct: 12 LTLGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKKICDAMNIPISF 71 Query: 80 LL 81 L Sbjct: 72 LF 73 >gi|294628187|ref|ZP_06706747.1| cro/CI family transcriptional regulator [Streptomyces sp. e14] gi|292831520|gb|EFF89869.1| cro/CI family transcriptional regulator [Streptomyces sp. e14] Length = 201 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ + ++E ++ ++ ++ + L + Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 79 Query: 80 LL 81 LL Sbjct: 80 LL 81 >gi|240147502|ref|ZP_04746103.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200308|gb|EEU98592.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 114 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R R+ +TQ E+ R + I +E G+ +++D + + H L++ Sbjct: 9 EIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSPTV 68 Query: 80 LL 81 L+ Sbjct: 69 LM 70 >gi|296123145|ref|YP_003630923.1| cupin [Planctomyces limnophilus DSM 3776] gi|296015485|gb|ADG68724.1| Cupin 2 conserved barrel domain protein [Planctomyces limnophilus DSM 3776] Length = 189 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R + +LT ++ +RTG +SW S++E + T ++ ++ +A L + L+ Sbjct: 6 LAQRIKNHRIDQRLTLDQVASRTGLTRSWWSKVENFRITPSLQSLGQIAAALGVSVSDLV 65 Query: 82 K 82 + Sbjct: 66 E 66 >gi|210620597|ref|ZP_03292145.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM 13275] gi|210155311|gb|EEA86317.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM 13275] Length = 71 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D++ E I RKE +TQK++ TG Q+ IS E G ++ + LA Sbjct: 3 DSLEPEYQIV-RAILESRKETGITQKQLAEITGINQADISRYENGSGNPSLKTLKRLAEG 61 Query: 73 LDTPL 77 + L Sbjct: 62 MGKTL 66 >gi|126727939|ref|ZP_01743764.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702770|gb|EBA01878.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 211 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RK+ +T E+ T + +S++E G ++ ++ + LA+ L PL + Sbjct: 25 GREVRAYRKQQNITVAELSGLTELSIGMLSKIENGNTSPSLSTLQTLANALAVPLTAFFR 84 >gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 208 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 31 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 90 Query: 82 KP 83 P Sbjct: 91 AP 92 >gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str. CNEVA-9066] gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger B] gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] Length = 92 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|332141631|ref|YP_004427369.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|332143443|ref|YP_004429181.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551653|gb|AEA98371.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327553465|gb|AEB00184.1| Transcriptional Regulator, XRE family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 106 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R R +Q+E+ R+G QS IS++E+G + I ++I LA LD L L+ P Sbjct: 10 ESLREARVRKGFSQRELSARSGVPQSHISKIESGGVDLRISSLIALARVLDLEL--LVAP 67 >gi|325846936|ref|ZP_08169793.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481178|gb|EGC84222.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 241 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F RKE +TQK+I + + +S+ E GKS +I ++ LA LD L Sbjct: 6 KKDFGEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLV 65 Query: 79 KLLK 82 LL+ Sbjct: 66 NLLE 69 >gi|323352799|ref|ZP_08087769.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121835|gb|EFX93581.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|325688158|gb|EGD30177.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325694179|gb|EGD36097.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327469090|gb|EGF14562.1| transcriptional regulator [Streptococcus sanguinis SK330] gi|328945639|gb|EGG39790.1| transcriptional regulator [Streptococcus sanguinis SK1087] gi|332363393|gb|EGJ41178.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 65 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ + G + I +E GK ++ + + L+ L +L Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|322386886|ref|ZP_08060510.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269168|gb|EFX52104.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 65 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ + G + I +E GK ++ + + L+ L +L Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|300857891|ref|YP_003782874.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685345|gb|ADK28267.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] Length = 145 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78 R +RK L+Q + + +++ IS LE +++ + + LA L P Sbjct: 18 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 77 Query: 79 KLL 81 LL Sbjct: 78 VLL 80 >gi|259417056|ref|ZP_05740975.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259345962|gb|EEW57776.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 187 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+IR A L+ TG +++ + ++E G+S+ I + +A PL L++ Sbjct: 9 NLRDIRASAGLSLSRAAEITGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIE 66 >gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] Length = 509 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 191 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 SD R +R+ KLT E+ G ++ ++S++E G++T ++ ++ +A Sbjct: 5 SDESTSAAAAIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRATPSLASLAGIAR 64 Query: 72 TLDTPL 77 L + Sbjct: 65 ALGVTM 70 >gi|197121330|ref|YP_002133281.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171179|gb|ACG72152.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 192 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + L+ +++ +G +++ + ++E G+S I+ + ++ L P L Sbjct: 11 VVGGNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSAL 70 Query: 81 LK 82 + Sbjct: 71 IT 72 >gi|262164343|ref|ZP_06032081.1| predicted transcriptional regulator [Vibrio mimicus VM223] gi|262026723|gb|EEY45390.1| predicted transcriptional regulator [Vibrio mimicus VM223] Length = 207 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|290962090|ref|YP_003493272.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260651616|emb|CBG74740.1| putative transcriptional regulatory protein [Streptomyces scabiei 87.22] Length = 190 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + +R G ++ + ++E ++ +I ++ + L + Sbjct: 9 QSLARNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|239814566|ref|YP_002943476.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801143|gb|ACS18210.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 262 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + P L +R F + R RK T ++ R+G + + IS E G+ + Sbjct: 26 KPGTRPKDEAPTL-DRTTFGHRLRAARKRFGWTLAQLAERSGVSITTISRAERGQLALGY 84 Query: 64 DNMIILAHTLDTPLWKLL 81 +N L L+ + + Sbjct: 85 ENFTALGRALEMDMNAMF 102 >gi|163800499|ref|ZP_02194400.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. AND4] gi|159175942|gb|EDP60736.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. AND4] Length = 207 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA+ L + Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLANGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|149920439|ref|ZP_01908908.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149818754|gb|EDM78197.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 199 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LT K++ RT + S +S++E +S+ ++ ++ +A+ LD + +L Sbjct: 138 GKRIREVRRQRSLTLKQMGRRTNLSVSLLSQIERAESSASVSSLFKIANALDVRISELF 196 >gi|295105951|emb|CBL03494.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 71 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 36/67 (53%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++R+ R+ R+ L+Q ++ G ++S I +E+G+ ++ +D++ +A LD Sbjct: 4 EQKRLRLGAAIRDRREAQGLSQHKLALMVGSSKSHIWRIESGRVSVGLDDLGRIADALDI 63 Query: 76 PLWKLLK 82 + +L Sbjct: 64 EVRQLFT 70 >gi|284041803|ref|YP_003392143.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946024|gb|ADB48768.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 201 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ +Q ++ G ++ + LE ++ N+ + + LD + Sbjct: 8 EALARTVRAARRQRGWSQDQLSAHAGISKGALVALERAETNPNLSTLCRIGDALDLNAAQ 67 Query: 80 LLK 82 LL+ Sbjct: 68 LLE 70 >gi|228963418|ref|ZP_04124579.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228796312|gb|EEM43759.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 117 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK LTQ+++ + +++ I+ E +++ ++ ++ D L Sbjct: 5 EVFGQNLKKLRKSKDLTQEQLGEQLNLSRNQINNYENAMFEPSMETLLQISSFFDVSLDL 64 Query: 80 L 80 L Sbjct: 65 L 65 >gi|218134629|ref|ZP_03463433.1| hypothetical protein BACPEC_02532 [Bacteroides pectinophilus ATCC 43243] gi|225374660|ref|ZP_03751881.1| hypothetical protein ROSEINA2194_00280 [Roseburia inulinivorans DSM 16841] gi|240147249|ref|ZP_04745850.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|260438263|ref|ZP_05792079.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|217990014|gb|EEC56025.1| hypothetical protein BACPEC_02532 [Bacteroides pectinophilus ATCC 43243] gi|225213484|gb|EEG95838.1| hypothetical protein ROSEINA2194_00280 [Roseburia inulinivorans DSM 16841] gi|257200566|gb|EEU98850.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|291539893|emb|CBL13004.1| Predicted transcriptional regulator with C-terminal CBS domains [Roseburia intestinalis XB6B4] gi|292809283|gb|EFF68488.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 114 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R R+ +TQ E+ R + I +E G+ +++D + + H L++ Sbjct: 9 EIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSPMV 68 Query: 80 LL 81 L+ Sbjct: 69 LM 70 >gi|167563856|ref|ZP_02356772.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167570993|ref|ZP_02363867.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 195 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S+ + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|157690862|ref|YP_001485324.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679620|gb|ABV60764.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 77 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ ++ R RK TQ+ R G + S + E+E G + +A L+ + Sbjct: 2 EKDVWGRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVGQIADALNITV 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|160887565|ref|ZP_02068568.1| hypothetical protein BACOVA_05585 [Bacteroides ovatus ATCC 8483] gi|237715793|ref|ZP_04546274.1| conserved hypothetical protein [Bacteroides sp. D1] gi|260171168|ref|ZP_05757580.1| hypothetical protein BacD2_04816 [Bacteroides sp. D2] gi|262407409|ref|ZP_06083957.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647505|ref|ZP_06725086.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294807470|ref|ZP_06766273.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|298482028|ref|ZP_07000217.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|315919486|ref|ZP_07915726.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156107976|gb|EDO09721.1| hypothetical protein BACOVA_05585 [Bacteroides ovatus ATCC 8483] gi|229443440|gb|EEO49231.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354217|gb|EEZ03309.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637165|gb|EFF55602.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294445365|gb|EFG14029.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|295087452|emb|CBK68975.1| Predicted transcriptional regulator with C-terminal CBS domains [Bacteroides xylanisolvens XB1A] gi|298271892|gb|EFI13464.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|313693361|gb|EFS30196.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 100 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+AK+TQ E+ R G +S+IS +E+G++ + + + L Sbjct: 40 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 91 >gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 191 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 11 VGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELV 70 >gi|325962304|ref|YP_004240210.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468391|gb|ADX72076.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + + R R+ +LT +++ + TG + ++S +E ++ ++ + Sbjct: 2 KALPVEPSNVPVA---IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58 Query: 66 MIILAHTLDTPLWKLL 81 ++ L L + L Sbjct: 59 LVTLCQVLSISIGDLF 74 >gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 110 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RKE KLTQK+I +Q + E+GK +N++ M LA + L Sbjct: 1 MIIERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 199 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R+ L+ E+ +G +++ IS++E +S+ + LA L L +L Sbjct: 18 LIATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQSSPTAVLLGRLAAGLGVSLAQL 77 Query: 81 LK 82 L Sbjct: 78 LT 79 >gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 106 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R A +TQ+++ R ++ IS E + + + +I +A LL Sbjct: 4 FGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYLL 63 >gi|163814737|ref|ZP_02206126.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] gi|158450372|gb|EDP27367.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] Length = 108 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP--- 76 MI + RK LTQ+E+ +IS LE+GKS ++ ++ L+ L Sbjct: 10 MIIGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLVQLSRALKCTCDY 69 Query: 77 -LWKLLKP 83 LW + P Sbjct: 70 FLWDMDVP 77 >gi|149203543|ref|ZP_01880513.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143376|gb|EDM31415.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 190 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT + G + W+S++E S +I ++ +A L P+ L Sbjct: 12 LGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSLLF 71 >gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 176 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A+++ +++ + G + ++S++E G + D + +A L L Sbjct: 19 GSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVL 76 >gi|45656179|ref|YP_000265.1| hypothetical protein LIC10275 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599413|gb|AAS68902.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 104 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 E F N R EA LTQ ++ G QS+IS++E+G+ I + T Sbjct: 44 KISEEEWESFFNRLTTARIEANLTQAQVAKSLGKYQSYISKIESGEKKIVYGRFCQIIQT 103 Query: 73 L 73 L Sbjct: 104 L 104 >gi|312198778|ref|YP_004018839.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230114|gb|ADP82969.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 200 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R++ LT ++ + + ++S+LE G + ++ ++ LA L T L+ Sbjct: 20 GRSIRVLRRQQGLTLVQLATKAELSHPFLSQLERGLARPSMASLHRLAQALGTTQPALM 78 >gi|213692935|ref|YP_002323521.1| transcriptional regulator, XRE family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524396|gb|ACJ53143.1| transcriptional regulator, XRE family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459113|dbj|BAJ69734.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 187 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILA 70 + +I+R + R+ R LTQ + +TG + WI++LE GK ++ ++ L Sbjct: 3 ASSIIRSPRQLAISLRDARIAKGLTQTALAQQTGLGRPWINQLEQGKIENASLSRILALC 62 Query: 71 HTLDT 75 + L+ Sbjct: 63 NALEV 67 >gi|78060929|ref|YP_370837.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968814|gb|ABB10193.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 180 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 >gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ + G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|32473937|ref|NP_866931.1| transcription regulator [Rhodopirellula baltica SH 1] gi|32444474|emb|CAD74472.1| probable transcription regulator [Rhodopirellula baltica SH 1] Length = 233 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + +T E+ ++G +SW+S +E + T ++ + LA +L LL Sbjct: 55 LAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSLL 114 Query: 82 K 82 + Sbjct: 115 E 115 >gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 229 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + D P D + R IRKE T + TG + S +S LE+G +++ Sbjct: 32 RDDVPGSDDTDEVLAEV-GPRLRRIRKERGATLAALSEATGISVSTLSRLESGLRKPSLE 90 Query: 65 NMIILAHTLDTPLWKLL 81 ++ +A PL +L+ Sbjct: 91 LLLPIARAHQVPLDELV 107 >gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 188 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I R +R L+Q+ + + G S +S +E+G+++ ++ ++ L L Sbjct: 8 EENIIGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRTSPSVGSLKRLLDAAGISL 67 Query: 78 WKLL 81 Sbjct: 68 GDFF 71 >gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 192 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T E+ + TG + S +S LE+G+ ++ ++ LA PL +L+ Sbjct: 11 VGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQRRPTLELLLPLARAHQVPLDELV 70 >gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 194 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+A L+Q+++ + ++ IS E KS +I ++I LA+ L +L+ Sbjct: 3 LGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFQLSLDQLV 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] Length = 302 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 38/62 (61%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +++R++AK++Q+++ + ++ +++ ETG +I+N+ +A D + +L Sbjct: 1 MFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDEL 60 Query: 81 LK 82 L+ Sbjct: 61 LE 62 >gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 158 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|311070727|ref|YP_003975650.1| putative transcriptional regulator [Bacillus atrophaeus 1942] gi|310871244|gb|ADP34719.1| putative transcriptional regulator [Bacillus atrophaeus 1942] Length = 72 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I+ R RK TQ+ G + S + E+E G + + +A L+ Sbjct: 2 EAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSPAIIKDVADALNISA 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 EELAPP 67 >gi|284048419|ref|YP_003398758.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952640|gb|ADB47443.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 97 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R LTQKE+ + G AQ+ IS +E G ++ + LA + L +P Sbjct: 37 ARINQHLTQKELAAKAGIAQTEISRIENGTRNPSLKILQRLAEGMGMVLKISFEP 91 >gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] Length = 180 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR L+Q+E+ R+G S IS++E ++ ++ + + + + Sbjct: 3 VGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEFF 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|167564668|ref|ZP_02357584.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 200 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82 >gi|111026150|ref|YP_708433.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110824993|gb|ABH00275.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 378 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D R+ + RK +T + + +G + +S+ E GK + D + LA Sbjct: 5 ADMGEANRVFVSSRLTAARKRRGVTITALSSESGLSTKSLSDFENGKKDPSQDTLDRLAQ 64 Query: 72 TLDTPLWKLLKP 83 L L+P Sbjct: 65 ALKVRSNYFLRP 76 >gi|42525598|ref|NP_970696.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41815609|gb|AAS10577.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 191 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +RK ++ +++ G + S++S LE K +++I N+ +A L L Sbjct: 6 GSKIRALRKVRSISLQQMAKDLGMSYSYLSGLENDKYSVSITNLQKIASYFKVNLVSFLT 65 Query: 83 P 83 P Sbjct: 66 P 66 >gi|311897650|dbj|BAJ30058.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 201 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R ++LT + R G + +++S LETG+ ++ ++ LA T + +LL Sbjct: 15 LGARLRERRVSSRLTLEVAAARVGLSPAYLSRLETGRRQPSLPVLLGLARAYGTSVAELL 74 >gi|294679084|ref|YP_003579694.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477900|gb|ADE87287.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 114 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R LTQ + ++G + ++E+ETG+ +I + LA L L L Sbjct: 58 LRVYRDLRGLTQAALAEKSGVNRVTVAEIETGRKQGSIATLRALADALGVSLDDL 112 >gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 370 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + N N+RKE +TQ+ + G ++ +S+ ETG+S ++ + LA D + Sbjct: 2 EELSLSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4] Length = 187 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +T ++ TG ++S +S LE G+ N++ ++ L+ D P+ L+ Sbjct: 11 VGPRLRALRTRRGITLADLSAETGISESTLSRLENGQRRANLELLLPLSRAYDVPIDDLV 70 >gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] Length = 118 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +RKE KLTQ++I G ++ IS+ E G + +N+ LA + P L Sbjct: 3 IIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTDYL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|188992517|ref|YP_001904527.1| hypothetical protein xccb100_3122 [Xanthomonas campestris pv. campestris str. B100] gi|167734277|emb|CAP52487.1| hypothetical protein predicted by Glimmer/Critica [Xanthomonas campestris pv. campestris] Length = 128 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIIL 69 A R I R R+ L+Q+E+ R G A + IS E+G +I+++ + + Sbjct: 4 ATPAPREIVAARLRQARERQGLSQREVGMRMGLDKDTASARISRYESGAMSISLEALFEM 63 Query: 70 AHTLDTPLWKLL 81 A L+ P LL Sbjct: 64 AEALEVPPAFLL 75 >gi|91780942|ref|YP_556149.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693602|gb|ABE36799.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 323 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 SD +L E R +R + +T+K++ ++G + ++ +E+G+ +++ + L+ Sbjct: 20 SDPVLSE---LARRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSV 76 Query: 72 TLDTPLWKLL 81 L+ P+ LL Sbjct: 77 ALNLPIQDLL 86 >gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 132 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ N R+ RK L+Q + + G + I + E G S+I+ + +A L P Sbjct: 3 PDKSTIGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVP 62 Query: 77 L 77 + Sbjct: 63 I 63 >gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae 670-6B] gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B] Length = 158 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 153 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ+++ R + +S ETG++ +D ++A T D PL + Sbjct: 1 MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|257869343|ref|ZP_05648996.1| predicted protein [Enterococcus gallinarum EG2] gi|257803507|gb|EEV32329.1| predicted protein [Enterococcus gallinarum EG2] Length = 110 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 M F N + R+E +L ++ ++G + + IS E GK T ++D LA L PL Sbjct: 1 MSFGENLKKFREEKQLGVNQLALKSGVSAAQISRFENGKRKTPHVDTAKKLAKALSVPLP 60 Query: 79 KLL 81 L+ Sbjct: 61 LLI 63 >gi|220911740|ref|YP_002487049.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858618|gb|ACL38960.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 191 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + + R R+ +LT +++ + TG + ++S +E ++ ++ + Sbjct: 2 KALPVEPSNVPVA---IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58 Query: 66 MIILAHTLDTPLWKLL 81 ++ L L + L Sbjct: 59 LVTLCQVLSISIGDLF 74 >gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 118 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK Q ++ G + IS E G T N+D+++ L L +LL Sbjct: 9 GVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67 >gi|291541946|emb|CBL15056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 64 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+++ ++ IS +E G I+ I + LD L +L Sbjct: 5 RLKSARAAKDLSQQQLAELVKVSRQTISAIEKGDYNPTINLCIAICKALDKTLDELF 61 >gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 504 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R +A + + R++RK A LT ++ G + S +S E GK + Sbjct: 18 RSEPIRTEQNAGAPDPLTIGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKL 77 Query: 64 DNMIILAHTLDTPLWKLL 81 + LA L T L +LL Sbjct: 78 SLLTTLAGVLGTDLGELL 95 >gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 2 GPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 60 >gi|237668636|ref|ZP_04528620.1| transcriptional regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656984|gb|EEP54540.1| transcriptional regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 183 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +NIRK K++ + +TG ++S + ++E G+S + + + L L+ Sbjct: 11 NLKNIRKSKKMSLDVVSEQTGVSKSMLGQIERGESNPTVAILGKIVSGLRVSFNDLV 67 >gi|229148196|ref|ZP_04276499.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635208|gb|EEK91735.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 115 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N + +RK LTQ+++ RTG ++ I ET + +++++ +LA +T Sbjct: 2 KTTVGQNIKQLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|225873288|ref|YP_002754747.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225792943|gb|ACO33033.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 128 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IR KL+Q+++ R +++IS++E GK+ + ++ LA L+ + LL Sbjct: 16 VARAVRDIRLGRKLSQRQLATRMQVPRTYISKIENGKAVPTLSSLERLAEALEVNICALL 75 Query: 82 K 82 + Sbjct: 76 Q 76 >gi|94972481|ref|YP_595699.1| hypothetical protein LIC083 [Lawsonia intracellularis PHE/MN1-00] gi|94732018|emb|CAJ54035.1| NA [Lawsonia intracellularis PHE/MN1-00] Length = 108 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 26 FRNIRKEAK--LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR + K + + +G + +I +E G+ I + N+ LA+ LD P+ +L++ Sbjct: 13 IRAIRTKHKDEIVLDRLAELSGLTKRYIQMIERGERNITVINLFPLANALDIPIIQLIE 71 >gi|72161202|ref|YP_288859.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71914934|gb|AAZ54836.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 119 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R +R+ T +E+ + ++SE+E G+ + + + + L PL Sbjct: 6 RHLLGDVLRQLRQRQGRTLREVSADARVSLGYLSEVERGQKEASSELLASICGALGVPLS 65 Query: 79 KLLK 82 ++L+ Sbjct: 66 QVLR 69 >gi|15671987|ref|NP_266161.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490504|ref|YP_003352484.1| transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722841|gb|AAK04103.1|AE006240_1 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374322|gb|ADA63855.1| Transcriptional regulator [Lactococcus lactis subsp. lactis KF147] Length = 185 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N + R KLTQ+E+ F++ IS E+ K+ N + +I LA ++ L Sbjct: 1 MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALAELYESDL 57 >gi|326331424|ref|ZP_08197714.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] gi|325950680|gb|EGD42730.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioidaceae bacterium Broad-1] Length = 508 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R+ RK LTQ ++ + +QS I+ +E G+ ++++ + + LD+ L + Sbjct: 10 GNLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQNLSLEMIARVGAALDSSLVDI 67 >gi|325662696|ref|ZP_08151293.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086435|ref|ZP_08335515.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471035|gb|EGC74262.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406201|gb|EGG85724.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 68 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I NN +N R E KL+Q E+ G +++ IS +ETG+ ++L L+ + Sbjct: 5 LILKNNLKNARAERKLSQMELAELVGVSRNTISSIETGQFNPTAKLALLLCIALEKKFEE 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A L+Q+++ + G ++ +S+ E+G++ ++ + + LL Sbjct: 5 ERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLFGVSSDWLL 62 >gi|262173540|ref|ZP_06041217.1| predicted transcriptional regulator [Vibrio mimicus MB-451] gi|261890898|gb|EEY36885.1| predicted transcriptional regulator [Vibrio mimicus MB-451] Length = 207 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 181 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + KLTQ E+ G ++ ++ +E+ S +I ++ +A L + L+ Sbjct: 9 IKRLRAQHKLTQIELAEMAGIPRATLANMESSNSNPSISVVMKVAQALGVTVDDLIT 65 >gi|121595107|ref|YP_987003.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|120607187|gb|ABM42927.1| transcriptional regulator, XRE family [Acidovorax sp. JS42] Length = 271 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + H F R+ R+ L+Q ++ + + +S +ETG+++ + D Sbjct: 2 QAMHHAPALSTP--TPFGERLRHWRQHRCLSQLDLAHAAEVSTRHLSCVETGRASPSRDM 59 Query: 66 MIILAHTLDTPLWK 79 ++ LAH LD PL + Sbjct: 60 VLRLAHRLDVPLRE 73 >gi|110633833|ref|YP_674041.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284817|gb|ABG62876.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 198 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +R E L LR + ++ R +RK LT + ++ G + W+S++E G S ++ Sbjct: 6 ERAETDLKTKALR---LLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVA 62 Query: 65 NMIILAHTLDTPLWKLLKP 83 ++ LA+ P+ L P Sbjct: 63 DLRALANHFKVPVSFFLTP 81 >gi|158319817|ref|YP_001512324.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140016|gb|ABW18328.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 71 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE L+Q+E ++ IS +ETGK +++ I+++ P+ ++ Sbjct: 3 NKVEILRKEKGLSQEEFAKIIRVSRQTISSIETGKYNPSLELAFIISNYFGKPIEEIF 60 >gi|333031050|ref|ZP_08459111.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] gi|332741647|gb|EGJ72129.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] Length = 105 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + FR+ RK KLTQKE+ ++ G +S+I +E G + + + + I +A L L Sbjct: 43 YGEIFRDRRKTLKLTQKELADKVGKERSYIGRIEKGSTDMQLSSFISIARALGLDL 98 >gi|330880055|gb|EGH14204.1| RtrR protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 76 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +++Q + +S++ +E G+ I ++ + +A L Sbjct: 6 KALGRRIRTQRKACQISQDALALACNIDRSYVGRIERGEVNITVEKLYRIAGVLACDPSG 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|326385587|ref|ZP_08207221.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209921|gb|EGD60704.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 227 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 35/65 (53%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E F + R++R LT ++ +TG +S +S++E K +++ D ++ ++ L+ Sbjct: 12 PETARFGHILRDLRTRLGLTLNDVGLKTGIPRSTLSKIENDKMSLSYDKIVKISSALNVD 71 Query: 77 LWKLL 81 + +L Sbjct: 72 ISELF 76 >gi|307298372|ref|ZP_07578176.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916458|gb|EFN46841.1| transcriptional regulator, XRE family [Thermotogales bacterium mesG1.Ag.4.2] Length = 103 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R +L+Q+E+ G Q +ISE+E G+ LA L P+ ++ Sbjct: 3 NLRDERIIRELSQRELGEVIGKDQKYISEVELGRIIPCFRKADTLARFLGVPVERIF 59 >gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + +E+ R QS +S +E G+ + +D ++ LA LDT L +L Sbjct: 14 LVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLVTLARALDTSLDQL 73 Query: 81 LK 82 ++ Sbjct: 74 VE 75 >gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 200 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ R R+ L+ E+ R G A+S +S+LETG +++ + LA LD Sbjct: 21 TPIARLAVA--IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALD 78 Query: 75 TPLWKLL 81 + +L+ Sbjct: 79 VQVSQLI 85 >gi|239820585|ref|YP_002947770.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805438|gb|ACS22504.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A ++ + +G + S +S +E G + +++ + L+ L + Sbjct: 10 GAQVRALRMAADVSGGALAKASGISASMLSRIERGLVSPSVETLERLSKGLGVSAPRFF 68 >gi|254974937|ref|ZP_05271409.1| MerR family transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092326|ref|ZP_05321804.1| MerR family transcriptional regulator [Clostridium difficile CIP 107932] gi|255100407|ref|ZP_05329384.1| MerR family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306352|ref|ZP_05350523.1| MerR family transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314064|ref|ZP_05355647.1| MerR family transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516744|ref|ZP_05384420.1| MerR family transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649843|ref|ZP_05396745.1| MerR family transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683001|ref|YP_003214286.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686599|ref|YP_003217732.1| hypothetical protein CDR20291_1234 [Clostridium difficile R20291] gi|306519941|ref|ZP_07406288.1| hypothetical protein CdifQ_07697 [Clostridium difficile QCD-32g58] gi|260209164|emb|CBA62385.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212615|emb|CBE03634.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 188 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + RNIRK K T ++ T + S+IS++E ++ ++ +A LDTPL+ Sbjct: 1 MLGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLY 58 >gi|254180890|ref|ZP_04887488.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|184211429|gb|EDU08472.1| DNA-binding protein [Burkholderia pseudomallei 1655] Length = 195 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R + + R+ ++S IS +E +S + LA+ L L L + Sbjct: 8 ARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFE 67 >gi|229170545|ref|ZP_04298193.1| Transcriptional regulator [Bacillus cereus AH621] gi|228612894|gb|EEK70071.1| Transcriptional regulator [Bacillus cereus AH621] Length = 65 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R E LTQ+E+ + + IS +E+ K ++ I +A TLD L KL Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLF 61 >gi|324327531|gb|ADY22791.1| helix-turn-helix domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 262 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 73 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK LTQ+E + ++ IS +E GK ++D +A + + ++ Sbjct: 5 NKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYNPSLDLAFEIAIYFNKTIEEIFT 63 >gi|228986720|ref|ZP_04146850.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773051|gb|EEM21487.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 262 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK L+Q+ + + + +S+ E G+ + +I++ + + L LL Sbjct: 3 FGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|228953531|ref|ZP_04115575.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079669|ref|ZP_04212202.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228703509|gb|EEL55962.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228806155|gb|EEM52730.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 184 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 132 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E KLTQ+E+ + +++ IS E + D+++ LA+ + LL Sbjct: 6 FGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKNLREPSKDSLVTLANFFNVSTDYLL 65 >gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] Length = 107 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +R + L+Q+E+ R G ++S +S E G+ + D + +A L Sbjct: 3 VFANILKTLRTDKHLSQQELATRLGISKSAVSMYEQGRREPDFDILNKIADIFQVDADYL 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|154484074|ref|ZP_02026522.1| hypothetical protein EUBVEN_01785 [Eubacterium ventriosum ATCC 27560] gi|163815734|ref|ZP_02207106.1| hypothetical protein COPEUT_01915 [Coprococcus eutactus ATCC 27759] gi|197302209|ref|ZP_03167268.1| hypothetical protein RUMLAC_00936 [Ruminococcus lactaris ATCC 29176] gi|218132784|ref|ZP_03461588.1| hypothetical protein BACPEC_00645 [Bacteroides pectinophilus ATCC 43243] gi|218282418|ref|ZP_03488687.1| hypothetical protein EUBIFOR_01269 [Eubacterium biforme DSM 3989] gi|225028328|ref|ZP_03717520.1| hypothetical protein EUBHAL_02600 [Eubacterium hallii DSM 3353] gi|225378593|ref|ZP_03755814.1| hypothetical protein ROSEINA2194_04261 [Roseburia inulinivorans DSM 16841] gi|226325326|ref|ZP_03800844.1| hypothetical protein COPCOM_03119 [Coprococcus comes ATCC 27758] gi|323340766|ref|ZP_08081018.1| putative transcriptional regulator [Lactobacillus ruminis ATCC 25644] gi|149735116|gb|EDM51002.1| hypothetical protein EUBVEN_01785 [Eubacterium ventriosum ATCC 27560] gi|158449039|gb|EDP26034.1| hypothetical protein COPEUT_01915 [Coprococcus eutactus ATCC 27759] gi|197298640|gb|EDY33181.1| hypothetical protein RUMLAC_00936 [Ruminococcus lactaris ATCC 29176] gi|217992510|gb|EEC58513.1| hypothetical protein BACPEC_00645 [Bacteroides pectinophilus ATCC 43243] gi|218216608|gb|EEC90146.1| hypothetical protein EUBIFOR_01269 [Eubacterium biforme DSM 3989] gi|224954374|gb|EEG35583.1| hypothetical protein EUBHAL_02600 [Eubacterium hallii DSM 3353] gi|225206069|gb|EEG88423.1| hypothetical protein COPCOM_03119 [Coprococcus comes ATCC 27758] gi|225209430|gb|EEG91784.1| hypothetical protein ROSEINA2194_04261 [Roseburia inulinivorans DSM 16841] gi|323091889|gb|EFZ34509.1| putative transcriptional regulator [Lactobacillus ruminis ATCC 25644] Length = 68 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E++ N+ + +R EA L+Q ++ G +++ IS +ETG+ +IL LD Sbjct: 1 MKEQLQLKNHLKEVRTEANLSQAQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|89892828|ref|YP_516315.1| hypothetical protein DSY0082 [Desulfitobacterium hafniense Y51] gi|89332276|dbj|BAE81871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 68 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E LTQKE+ + G ++ I+ +ETGK ++ LA + +L Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWLAYDLAKLFKVSIEELF 60 >gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK L+Q+++ G ++ +++ E G+S +I +I L+ + K Sbjct: 1 MSFQEQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDK 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 293 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+A L+Q+++ + G ++ I++ E G T +I N++ +A+ + +LL Sbjct: 5 EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQISVDELL 62 >gi|306835383|ref|ZP_07468404.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304568749|gb|EFM44293.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 120 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS------TINIDNMIILAHTLDT 75 F R +R+ ++Q+ + + +G ++S IS LE ++ + + LA L+ Sbjct: 15 FSQQLRRVRERRGVSQQVLADISGVSRSQISNLERNENGLHTMADPQLSTVYKLALALEI 74 Query: 76 PLWKLL 81 P LL Sbjct: 75 PPAVLL 80 >gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC 49185] gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 168 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK+ ++Q+++ G ++ +S+ E+G+S ID +I L++ + LLK Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLK 63 >gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] Length = 118 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK Q ++ G + IS E G T N+D+++ L L +LL Sbjct: 9 GVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67 >gi|220916034|ref|YP_002491338.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953888|gb|ACL64272.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 260 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R + L+ +++ +G +++ + ++E G+S I+ + ++ L P L Sbjct: 79 VVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSAL 138 Query: 81 LK 82 + Sbjct: 139 IT 140 >gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 464 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + IR+E LTQ+ + G + S+I+ +E + + D ++ LA + L Sbjct: 8 LGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADL 66 >gi|325261431|ref|ZP_08128169.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032885|gb|EGB94162.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE TQK++ + G A S IS E G + D +I L+ LL Sbjct: 4 FGKKIKQLRKEYNFTQKQLASLAGVAVSAISAYEAGNRYPSYDVLISLSRIFHVSTDYLL 63 >gi|253576835|ref|ZP_04854160.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843702|gb|EES71725.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 69 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M R RK TQ+E+ ++G + + + +E G + + +A L L Sbjct: 2 ENMQLAQRIRAFRKLKGFTQQELAEKSGVSLALLGAVERGNRRADDQMLTKIAQCLGISL 61 Query: 78 WKL 80 +L Sbjct: 62 AEL 64 >gi|257066681|ref|YP_003152937.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798561|gb|ACV29216.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 134 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R + +TQ+E+ + ++ IS E K+ +I N+I L+ + L +LLK Sbjct: 4 GDKLKEARLKKNMTQEEVAEKIFVSRQSISNWENNKTYPDIGNVIALSDLYEISLDELLK 63 >gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] Length = 134 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R +RK+ LTQ + N ++ S ET K T ++D+++ LA L L+ Sbjct: 6 LANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLAGFYHVSLNDLV 65 >gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88] gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88] Length = 126 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK A +Q+++ + G ++ IS+ E+G+S +I N+I L+ + +L Sbjct: 5 ERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSNPDISNVIKLSGIYNVSTDYIL 62 >gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 80 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R LTQ+++ G ++ I+++E G + +++N +A LD Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSARPSVNNAKKIAQALD 62 >gi|330814715|ref|YP_004362890.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] gi|327374707|gb|AEA66058.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] Length = 111 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +A +Q+++ + ++ IS +E+G + + + L L L +L Sbjct: 23 VGRRLKEVRLQAGKSQEDLAHEAAVSRVAISAVESGAANTTVLTLAALCRPLGISLSELF 82 Query: 82 KP 83 P Sbjct: 83 AP 84 >gi|327184359|gb|AEA32806.1| hypothetical protein LAB52_09520 [Lactobacillus amylovorus GRL 1118] Length = 94 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R + +Q+E+ + ++ +S+ E+G+S ++D +++L++ D LLK Sbjct: 5 QKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYLLK 63 >gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 107 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + + RK +TQ E+ ++G S I + E+G+ D + +A L Sbjct: 4 RHSIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGIS 61 >gi|229552822|ref|ZP_04441547.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229313804|gb|EEN79777.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 223 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+M F + + R++ LTQ ++ + + IS E G+S +I ++ ++ L Sbjct: 7 EKMQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISL 66 Query: 78 WKLLK 82 +LL+ Sbjct: 67 DQLLR 71 >gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] Length = 152 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E LTQ+E+ +R + +S ETG + ID + ++A LD P+ +LL Sbjct: 10 QLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVMRLL 63 >gi|302549793|ref|ZP_07302135.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|51317972|gb|AAU00097.1| putative ORF192 [Streptomyces viridochromogenes] gi|302467411|gb|EFL30504.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 192 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R LT +++ +R + S +S +E G+ + + +A L LL Sbjct: 7 LGSRIQELRLSQSLTLQDLADRAAVSVSMLSSVERGRKAPTVVVLARIAEGLGVTAAHLL 66 Query: 82 K 82 Sbjct: 67 T 67 >gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] Length = 245 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + IR L+Q+ ++ + E G+S ID +I +A+ + L Sbjct: 4 FGKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSEPKIDTLIKVANYFSISIDDFL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_097M14] Length = 474 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 32/58 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R+ ++Q ++ + + S+++ +E+GK I++D ++ +A+ L + + Sbjct: 9 GYKIKSKRRSLGISQADMAKKLSISPSYLNLIESGKRKISVDLLLKVANELGIEISDI 66 >gi|209546650|ref|YP_002278568.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537894|gb|ACI57828.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 276 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +Q ++ TG +Q IS +E+G+ST N++ LA LD PL + Sbjct: 14 LGAQLRAWRGARGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPLRE 71 >gi|167571834|ref|ZP_02364708.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 200 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82 >gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 302 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE ++Q+E+ R ++ +S+ E + + M+++ + + LL Sbjct: 3 FGEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVTMDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 171 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R+E +TQ E+ + + IS ETGK+ ++DN++ +A L L K Sbjct: 1 MTFAQIIKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDK 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|228957400|ref|ZP_04119156.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802278|gb|EEM49139.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 149 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETG++ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGQNYPSIEIIIHLSDLFSITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|227512586|ref|ZP_03942635.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084201|gb|EEI19513.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 198 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R IR E + ++ +G ++ +S++E ++ I+ + + L+ P L Sbjct: 16 IVSKNLRKIRLERGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTTL 75 Query: 81 LK 82 L+ Sbjct: 76 LE 77 >gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 130 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|225019632|ref|ZP_03708824.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum DSM 5476] gi|224947599|gb|EEG28808.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum DSM 5476] Length = 120 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + + F + RK +++ ++ +R A +I+ +E ++ L Sbjct: 4 DKVKYDFKAFGQAIKEARKAKGISRNQLADRLNIAPRYIASIENSGQHPSLQIFYELVTF 63 Query: 73 LDTPLWKLLKP 83 LD + + P Sbjct: 64 LDVSVDQFFFP 74 >gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 473 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R++ LTQ + G + S++++LE + I + ++ LA D P Sbjct: 7 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLP 60 >gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721] gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721] Length = 358 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I E N + RK+ KL+Q E+ + G A++ I E + NI +I L+ ++ Sbjct: 2 IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61 Query: 75 TPLWKLL 81 + LL Sbjct: 62 CSIDSLL 68 >gi|13488172|ref|NP_085894.1| hypothetical protein mll9374 [Mesorhizobium loti MAFF303099] gi|14028429|dbj|BAB54981.1| mll9374 [Mesorhizobium loti MAFF303099] Length = 405 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 3 RRKRDEPHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 R KR + E+ I R RK L+ + + + G + S +S+LETGK+ Sbjct: 8 RSKRAGAVMDARSEVEKQINGMVGKRLREARKAKSLSLEALAGKVGMSVSQLSKLETGKA 67 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 +I ++ LD L+ Sbjct: 68 PASIAALVRFGLELDRSAQYFLQ 90 >gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 168 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+E KL+QKE+ + G + IS E G+STI D LA + + LL Sbjct: 2 NRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLL 59 >gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334] gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334] Length = 158 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 131 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E L+Q++I N+ ++ IS E+G +T ++ N++ LA L+T L L+ Sbjct: 8 QLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSLDSLV 64 >gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] Length = 209 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +DA + ER+ R +R T + R G ++S IS +E G ++ + LA Sbjct: 11 DTDAGVNERI--ARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLA 68 Query: 71 HTLDTPLWKLL 81 L L L Sbjct: 69 AGLGVSLASLF 79 >gi|327542983|gb|EGF29431.1| transcriptional regulator, XRE family [Rhodopirellula baltica WH47] Length = 232 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + +T E+ ++G +SW+S +E + T ++ + LA +L LL Sbjct: 54 LAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSLL 113 Query: 82 K 82 + Sbjct: 114 E 114 >gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10] Length = 200 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RK+ +TQ+E+ ++S IS E G++ +I +I LA L + Sbjct: 1 MAFHQMIKERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 182 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|194018000|ref|ZP_03056607.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010337|gb|EDW19912.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 77 Score = 51.5 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ ++ R RK TQ+ R G + S + E+E G + +A L+ + Sbjct: 2 EKDMWGRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVDQIADALNITV 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|288556482|ref|YP_003428417.1| DNA-binding protein XRE transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547642|gb|ADC51525.1| DNA-binding protein XRE transcriptional regulator [Bacillus pseudofirmus OF4] Length = 64 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q E+ + G + I +E GK + + + TL L +L Sbjct: 5 RLKIARTEHDLSQAELAKKVGVTRQTIGLIEAGKYNPTLQLCLAICKTLHKTLDELF 61 >gi|229072719|ref|ZP_04205921.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] gi|229193504|ref|ZP_04320451.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228590036|gb|EEK47908.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228710695|gb|EEL62668.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] Length = 68 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 4 LYLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63 Query: 81 L 81 Sbjct: 64 F 64 >gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] Length = 158 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ + G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|146305877|ref|YP_001186342.1| cupin 2 domain-containing protein [Pseudomonas mendocina ymp] gi|145574078|gb|ABP83610.1| Cupin 2, conserved barrel domain protein [Pseudomonas mendocina ymp] Length = 188 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ A T ++ G S++S+ E + +++ ++ +A LD PL L Sbjct: 7 GERLRRYRRAAGKTLNQVAAEAGLTASFLSQAERNLTGVSLSSLASIAKALDVPLNVLF 65 >gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila] gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] Length = 101 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + RKE +T + + G +Q +S E G + IN+D+++++A L+TP+ Sbjct: 6 LLVGQRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPI 63 >gi|241113309|ref|YP_002973144.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861517|gb|ACS59183.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 86 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + N + +R L+Q+ + G + IS++E + + ID++ +A L Sbjct: 1 MTPRDLLAWNVKKLRVNRGLSQERLALEAGLERVSISQIERKRVNLGIDSLGKIASVLGC 60 Query: 76 PLWKLL 81 + +L Sbjct: 61 DILELF 66 >gi|257791706|ref|YP_003182312.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475603|gb|ACV55923.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 73 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +RKE L+Q++ G +++ + +E G+ ++I + +A + L Sbjct: 7 QKQVGVRLKALRKEKTGLSQEKFAYSIGVDRAYYAHIEQGRHGVSIVMLKKIADGMGIGL 66 Query: 78 WKLLK 82 ++ K Sbjct: 67 EEMFK 71 >gi|254510889|ref|ZP_05122956.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534600|gb|EEE37588.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 184 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ + +++ +++G +++ +S +E G + + + L P+ +LL Sbjct: 12 RLNELRQGRGWSLEQLADQSGISRANLSRMEKGDVSPTAETLGRLCAAYGLPMSRLL 68 >gi|167755905|ref|ZP_02428032.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402] gi|237734869|ref|ZP_04565350.1| DNA-binding protein [Mollicutes bacterium D7] gi|167704844|gb|EDS19423.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402] gi|229382197|gb|EEO32288.1| DNA-binding protein [Coprobacillus sp. D7] Length = 177 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ LT +E+ NR+ + ++S+LE ++ ++ + + L T L + Sbjct: 4 GSKVKRLRQANGLTLEELANRSELTKGFLSQLERDLTSPSVATLEDILEALGTNLQEFF 62 >gi|188581317|ref|YP_001924762.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium populi BJ001] gi|179344815|gb|ACB80227.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium populi BJ001] Length = 299 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R L++K + +G ++ +I++LE+G+ ++I + +A+ + L L+ Sbjct: 15 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGLRLDDLV 74 >gi|114881116|ref|YP_758657.1| conjugal transfer protein TrbA [Pseudomonas aeruginosa] gi|168998393|ref|YP_001687670.1| helix-hairpin-helix DNA-binding motif-containing protein [Birmingham IncP-alpha plasmid] gi|540916|pir||A49852 hypothetical protein trbA [imported] - plasmid RK2 gi|152555|gb|AAA26427.1| trfA [Plasmid RP4] gi|294706|gb|AAA26404.1| trfA [Plasmid RK2] gi|581453|emb|CAA46820.1| TrbA [Escherichia coli] gi|53794351|gb|AAU93702.1| TrbA [Integration vector pJK202] gi|114703527|emb|CAK12664.1| TrbA repressor protein [Pseudomonas aeruginosa] gi|130693835|gb|ABO32173.1| TrbA [Broad host range expression vector pRK415iq] gi|130693916|gb|ABO32186.1| TrbA [Broad host range expression vector pRK415] gi|148767926|gb|ABR10913.1| TrbA [Broad host range expression vector pRKNH3] gi|154814520|gb|ABS87285.1| TrbA [Cloning vector pCPP5301] gi|154814532|gb|ABS87296.1| TrbA [Cloning vector pCPP5264] gi|154814551|gb|ABS87313.1| TrbA [Cloning vector pCPP5386] gi|157277496|tpe|CAJ85687.1| TPA: TrbA repressor protein [Birmingham IncP-alpha plasmid] gi|262117765|dbj|BAI47857.1| TrbA [Helper vector pRH210] gi|262117809|dbj|BAI47900.1| TrbA [Helper vector pRH220] gi|317109774|gb|ADU90713.1| conjugal transfer protein TrbA [uncultured bacterium] gi|317109857|gb|ADU90795.1| conjugal transfer protein TrbA [uncultured bacterium] gi|317109942|gb|ADU90879.1| TrbA repressor [uncultured bacterium] Length = 121 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+ E+ R G + S++S+L GK+ ++ M +A Sbjct: 4 QIFFTNILRLLDERGMTKHELSERAGVSISFLSDLTNGKANPSLKVMEAIADA 56 >gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ +RKE +L+Q+++ + ++ IS+ E G + + ++++ LA + + Sbjct: 4 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 63 Query: 80 LLK 82 LL+ Sbjct: 64 LLR 66 >gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 191 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ +RKE +L+Q+++ + ++ IS+ E G + + ++++ LA + + Sbjct: 1 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 106 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R A +TQ+++ R ++ IS E + + + +I +A L Sbjct: 4 FGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYLF 63 >gi|288803878|ref|ZP_06409303.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella melaninogenica D18] gi|288333643|gb|EFC72093.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella melaninogenica D18] Length = 103 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 30/53 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RK+ K+TQ+++ ++ G + +IS +E G S + + + +A+ L Sbjct: 43 YAELLKEQRKQQKMTQQQLADKIGKKREYISNIERGNSDMQLSTFMQIANALG 95 >gi|302540026|ref|ZP_07292368.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302457644|gb|EFL20737.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 207 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +E D ER+I R R+ A L+ E+ R G +++ +S++E ++ ++ Sbjct: 7 PAEESDNPDDKALERVI-AVRAREYRQAAGLSVGEMAQRVGISKAMLSKIENAQTACSLT 65 Query: 65 NMIILAHTLDTPLWKLLK 82 + LA LD P+ L + Sbjct: 66 TLSRLARGLDVPVTALFR 83 >gi|229137167|ref|ZP_04265786.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228646339|gb|EEL02554.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 70 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK K+TQ+E+ GF+ S IS +E G+ +N D + LA L + ++ Sbjct: 2 RIRHIRKAKKITQEELAKNLGFSGSSAISYIENGQRKLNADKIPKLAECLGVTIEEIF 59 >gi|150403131|ref|YP_001330425.1| helix-turn-helix domain-containing protein [Methanococcus maripaludis C7] gi|150034161|gb|ABR66274.1| helix-turn-helix domain protein [Methanococcus maripaludis C7] Length = 200 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 7 DEPHLSDAILRER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 D P+ + I E I N + IR E L+ + TG ++ + ++E + I Sbjct: 7 DIPYKTKVIFMENPSHIISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTIT 66 Query: 65 NMIILAHTLDTPLWKLL 81 ++ +A+ L LL Sbjct: 67 TILKIANGLKISFTSLL 83 >gi|296110834|ref|YP_003621215.1| hypothetical protein LKI_03520 [Leuconostoc kimchii IMSNU 11154] gi|295832365|gb|ADG40246.1| hypothetical protein LKI_03520 [Leuconostoc kimchii IMSNU 11154] Length = 110 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R LTQ E+ + + S IS++E + I I+ + +A L+T + L Sbjct: 5 VIGNKIKELRTLQNLTQFELAEKANLSISLISKIEIQEENIKINTLQNIAKALNTTVESL 64 Query: 81 LK 82 LK Sbjct: 65 LK 66 >gi|259417313|ref|ZP_05741232.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346219|gb|EEW58033.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 204 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R RK+ KLT + + +++G + ++S++E +T ++ + ++ Sbjct: 1 MPREKPPQEPNVGPAIRKRRKQLKLTLQALCDKSGVSVGYLSQVERDNATPSLGTLAQIS 60 Query: 71 HTLDTPL 77 LD L Sbjct: 61 AALDVGL 67 >gi|258623173|ref|ZP_05718182.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] gi|258625497|ref|ZP_05720389.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258582203|gb|EEW07060.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258584471|gb|EEW09211.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] Length = 223 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M LAH L + Sbjct: 40 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 99 Query: 78 WKLLKP 83 +L +P Sbjct: 100 PQLFEP 105 >gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24] gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24] gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24] Length = 191 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE ++T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 11 VGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELV 70 >gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] Length = 154 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R +R E LTQ + +Q + E GK + + LA T + L Sbjct: 46 MFAHRLRQLRLERGLTQAALAKHLDVSQGTVGNWEGGKREPDFATVARLAALFGTTVDDL 105 Query: 81 L 81 + Sbjct: 106 I 106 >gi|163757791|ref|ZP_02164880.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162285293|gb|EDQ35575.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 182 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R + +++ + +G ++S +S +ETG+ + + + ++ + +LL Sbjct: 8 LADRLKQLRATRGWSLQQLADISGVSRSALSRIETGEVSPTAETLGAMSSAFQMTISQLL 67 Query: 82 KP 83 P Sbjct: 68 AP 69 >gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct] Length = 183 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62 >gi|284802769|ref|YP_003414634.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284995911|ref|YP_003417679.1| transcriptional regulator [Listeria monocytogenes 08-5923] gi|284058331|gb|ADB69272.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284061378|gb|ADB72317.1| transcriptional regulator [Listeria monocytogenes 08-5923] Length = 101 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + +R + TQ++I N G +++ S +E G++ +++ ++ LA+ + L Sbjct: 1 MFGDKLKMLRSKTNKTQEDIANILGVSRAAYSHIENGRNEPDMETIVKLANYFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|320007252|gb|ADW02102.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ LT + R G + + +S LETG+ ++ ++ LA T + +LL Sbjct: 16 APRLRDLRRNRGLTLEAAAGRAGLSPAHLSRLETGRRQPSLPMLLGLARVYGTTVSELL 74 >gi|229153416|ref|ZP_04281594.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] gi|228630020|gb|EEK86671.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] Length = 68 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++NN + RK L+Q E+ + A+ I+ +E K ++ I LA L+T L L Sbjct: 4 LYLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALETDLNSL 63 Query: 81 L 81 Sbjct: 64 F 64 >gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 415 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N ++ RK+ KLTQ+E+ + G A+S +S E G NI +I L+ ++ L L Sbjct: 8 IFSENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLMNCSLDNL 67 Query: 81 L 81 + Sbjct: 68 I 68 >gi|149201917|ref|ZP_01878891.1| hypothetical protein RTM1035_05235 [Roseovarius sp. TM1035] gi|149144965|gb|EDM32994.1| hypothetical protein RTM1035_05235 [Roseovarius sp. TM1035] Length = 157 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + F + R R KL+Q+E+ G ++ +I ++E G+S + + + L Sbjct: 2 AKKDFGQSLREWRVTQKLSQRELSAAIGVSRGYIGDIEAGRSEPSRNFLERLQERFG 58 >gi|148266629|ref|YP_001245572.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392669|ref|YP_001315344.1| hypothetical protein SaurJH1_0195 [Staphylococcus aureus subsp. aureus JH1] gi|257793983|ref|ZP_05642962.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258408610|ref|ZP_05680895.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421201|ref|ZP_05684128.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258438949|ref|ZP_05690040.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444184|ref|ZP_05692518.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258447065|ref|ZP_05695215.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258448523|ref|ZP_05696636.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455756|ref|ZP_05703711.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282893361|ref|ZP_06301594.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282926312|ref|ZP_06333944.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405474|ref|ZP_06815284.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296274946|ref|ZP_06857453.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297209290|ref|ZP_06925689.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244811|ref|ZP_06928691.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300911288|ref|ZP_07128737.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|147739698|gb|ABQ47996.1| transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|149945121|gb|ABR51057.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787955|gb|EEV26295.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840619|gb|EEV65078.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842625|gb|EEV67047.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257847825|gb|EEV71821.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850443|gb|EEV74391.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854078|gb|EEV77031.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257858154|gb|EEV81042.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257861968|gb|EEV84741.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282591641|gb|EFB96712.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764047|gb|EFC04174.1| transcriptional regulator [Staphylococcus aureus A8117] gi|294969549|gb|EFG45568.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296886223|gb|EFH25157.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178328|gb|EFH37575.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300887467|gb|EFK82663.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 65 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R +TQKE+ N+ G + IS +E G ++ + L+ L ++ Sbjct: 3 NNLKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIF 60 >gi|328954706|ref|YP_004372039.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328455030|gb|AEB06224.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 191 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P A R R++RK+ LT ++ TG + ++S +E G S+ + N+ Sbjct: 4 STPGEDIAAGRAATQLGERLRSLRKKKVLTITQLSLYTGLSVGFLSNMENGISSPTVANL 63 Query: 67 IILAHTLDTPLWKLL 81 + + L+ + +L Sbjct: 64 TKVCNALNVSILDVL 78 >gi|326381708|ref|ZP_08203402.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326199955|gb|EGD57135.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 96 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R F R A +TQ E+ +G ++ IS LE G S+I+ D + LA L T Sbjct: 18 VRRRAFGAALAQARLTAGMTQDELAAASGVSRPTISRLELGTSSISSDRVWDLAEALGTT 77 Query: 77 LWKL 80 + Sbjct: 78 PADI 81 >gi|296171710|ref|ZP_06852903.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893987|gb|EFG73751.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 112 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + L+ PL Sbjct: 6 REVIGDVLREARMTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDALEVPLS 65 Query: 79 KLL 81 +L Sbjct: 66 SVL 68 >gi|227502795|ref|ZP_03932844.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] gi|227076525|gb|EEI14488.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49725] Length = 153 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS------TINIDNMIILAHTLDT 75 F R +R+ ++Q+ + + +G ++S IS LE ++ + + LA L+ Sbjct: 48 FSQQLRRVRERRGVSQQVLADISGVSRSQISNLERNENGLHTMADPQLSTVYKLALALEI 107 Query: 76 PLWKLL 81 P LL Sbjct: 108 PPAVLL 113 >gi|182414739|ref|YP_001819805.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177841953|gb|ACB76205.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 204 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R KL+ ++ R+ ++ +S++E GK I M +A L PL + Sbjct: 25 QIIAKKILTERHRQKLSLGDLAVRSDVSKGMLSQIEQGKRNPTIAVMSKIATGLRVPLAR 84 Query: 80 LL 81 LL Sbjct: 85 LL 86 >gi|148257862|ref|YP_001242447.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410035|gb|ABQ38541.1| transcriptional regulator, XRE family with shikimate kinase activity [Bradyrhizobium sp. BTAi1] Length = 342 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 4 RKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +++D ++ + +R + R +R +++K + +G ++ +I++LE+G+ + Sbjct: 17 QRQDSFPVAGEAVPDRFLSELGARVRTMRAVRGMSRKVLAQTSGVSERYIAQLESGQGNV 76 Query: 62 NIDNMIILAHTLDTPLWKLL 81 +I + LA L L+ Sbjct: 77 SIMLLRRLAEVAGVQLEDLV 96 >gi|119718420|ref|YP_925385.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119539081|gb|ABL83698.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 128 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R A+L+ +++ + G + ++S++E G + + + +A L +L Sbjct: 13 LGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQIAKALRISAEQL 71 >gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 230 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 + + R LTQK + + G +Q+ I ++ETGK++ ++ +A+ L P Sbjct: 2 KTTLAGRLKEARAARGLTQKALGDLVGVSQAAIQKIETGKASQTT-KLVEIANALGVMPD 60 Query: 78 W 78 W Sbjct: 61 W 61 >gi|282599735|ref|ZP_05971683.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568432|gb|EFB73967.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 201 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+++ L+ E+ + G A+S +S+LE+G +I+ + L LD P + Sbjct: 24 ELISKALAAERQKSGLSISELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFSR 83 Query: 80 LLK 82 L++ Sbjct: 84 LIE 86 >gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] Length = 130 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|58337201|ref|YP_193786.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903784|ref|ZP_04021589.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58254518|gb|AAV42755.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227868671|gb|EEJ76092.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 112 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ +TQ E+ +++G ++ ++++E G ++ D + +A L+ LL Sbjct: 7 LAQKITNYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLL 66 >gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 203 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ + +R E KLT ++ G ++S +SE+E K+ I Sbjct: 8 RRTPAAAAPQPSGVTPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTI 67 Query: 64 DNMIILAHTLDTPLWKLL 81 L + L L +L Sbjct: 68 AVAWRLTNALGITLDELF 85 >gi|302869889|ref|YP_003838526.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501351|ref|YP_004080238.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302572748|gb|ADL48950.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407970|gb|ADU06087.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 241 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R++A LTQ+ + R+G +Q+ I+ +E G ++ L L L ++ Sbjct: 11 ARTLRREREQAGLTQQALAARSGLSQAAIARIERGDRLPSLTAAERLLAALGRQLRIEVE 70 Query: 83 P 83 P Sbjct: 71 P 71 >gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 184 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK A LT K + S +S++E G + ++ + +++ L P++ Sbjct: 6 VGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIPIFNFF 65 >gi|255655401|ref|ZP_05400810.1| MerR family transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451389|ref|ZP_06893127.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880261|ref|ZP_06904226.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259805|gb|EFH06662.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428704|gb|EFH14586.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 188 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + RNIRK K T ++ T + S+IS++E ++ ++ +A LDTPL+ Sbjct: 1 MLGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLY 58 >gi|254511384|ref|ZP_05123451.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535095|gb|EEE38083.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 196 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R++ L+Q+ + R G QS IS++E + ++ +AH LD L Sbjct: 6 EQVAETLRKAREQKGLSQRALSARAGVPQSHISKIENNTVDLRTSSLTAIAHALDLELV 64 >gi|167896507|ref|ZP_02483909.1| DNA-binding protein [Burkholderia pseudomallei 7894] Length = 202 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ P + + +R E KLT ++ G ++S +SE+E K+ I Sbjct: 8 RRTTAPASPATSATPPRV-GEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTI 66 Query: 64 DNMIILAHTLDTPLWKLL 81 L + L L +L Sbjct: 67 AVAWRLTNALGISLDELF 84 >gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933] gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 111 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R +++ SD +RK LT E+ R+G +Q+ IS++E G S+ Sbjct: 7 MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 58 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + LA+ L+ L KL Sbjct: 59 PSATILSRLANALNITLSKLF 79 >gi|15612927|ref|NP_241230.1| transcriptional regulator [Bacillus halodurans C-125] gi|10172977|dbj|BAB04083.1| transcriptional regulator [Bacillus halodurans C-125] Length = 66 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R +TQ+++ + G + I +E G+ ++ + +A L L L Sbjct: 3 NNVKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLF 60 >gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 219 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RN+RK +LT + TG + +IS++E ++ ++ + ++ L Sbjct: 28 LGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNRPSVTALFRISRALGVS 82 >gi|319938810|ref|ZP_08013174.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811860|gb|EFW08126.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 189 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ ++ QS + E GK+ ++I+N ILA + LL Sbjct: 3 NRLKVLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSIPYLL 60 >gi|296450086|ref|ZP_06891848.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296878467|ref|ZP_06902473.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296261094|gb|EFH07927.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296430551|gb|EFH16392.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 78 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 IF+ N +RK+ L Q++ ++ IS +E GK +++ ++ + + Sbjct: 11 EIFLKNCVEALRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIE 70 Query: 79 KLL 81 ++ Sbjct: 71 EIF 73 >gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R+ L+ E+ +G +++ IS++E +S+ + LA L PL +L Sbjct: 17 LIAARLLALRQAKALSLAELAELSGVSKAMISKVERAESSPTAVLLGRLAAGLGVPLAQL 76 Query: 81 LK 82 L Sbjct: 77 LT 78 >gi|254488462|ref|ZP_05101667.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045331|gb|EEB85969.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 190 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +RK LT + + +R + W+S++E S I ++ +A L + Sbjct: 10 QSLGADLRALRKARGLTLQGLADRLNRSVGWLSQVERDLSDPAITDLRQMAQALGVSVSM 69 Query: 80 LLK 82 L + Sbjct: 70 LFR 72 >gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 182 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|197122398|ref|YP_002134349.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917180|ref|YP_002492484.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172247|gb|ACG73220.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219955034|gb|ACL65418.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 81 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D E R R+ +TQ+ + + +++S +E G ++ +A Sbjct: 10 DPRREELRRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARA 69 Query: 73 LDTPLWKLL 81 L P +++ Sbjct: 70 LGIPATRIV 78 >gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] Length = 88 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + RK + Q+E+ + G +S++E G + + + L+ ++L Sbjct: 6 FGPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVYYPTFETLEKIMVVLEVAPNEML 65 >gi|298243565|ref|ZP_06967372.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556619|gb|EFH90483.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 452 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R LTQ ++ F+ S+IS +E G+ ++ + ILA L + Sbjct: 12 KSVGEKLRSARIAQHLTQSQLAA-PDFSVSYISAIERGQIHPSLRALEILATRLGLSSTQ 70 Query: 80 LL 81 LL Sbjct: 71 LL 72 >gi|269926238|ref|YP_003322861.1| transcriptional regulator, XRE family [Thermobaculum terrenum ATCC BAA-798] gi|269789898|gb|ACZ42039.1| transcriptional regulator, XRE family [Thermobaculum terrenum ATCC BAA-798] Length = 816 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74 E F + R+ R KLTQ+E+ ++ + IS+LE G K T D + +LA L+ Sbjct: 2 ESEPEPFGSLLRSFRIRNKLTQEELAEKSNLSVRAISDLERGIKLTPRRDTIELLAQALN 61 >gi|255101457|ref|ZP_05330434.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255307330|ref|ZP_05351501.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 66 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R+ +LTQ+++ + G + I LE GK ++ I ++ +DTP+ +L Sbjct: 4 FTCNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|254390453|ref|ZP_05005669.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294816734|ref|ZP_06775376.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197704156|gb|EDY49968.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294321549|gb|EFG03684.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 285 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP H + R R++R++A LT E+ G+ S +E K+ Sbjct: 1 MPISPSSSAHAA------RQTVAQRLRDLRRDADLTGSELARICGWTHPKTSRIENAKTP 54 Query: 61 INIDNMIILAHTLDTP 76 + D++ + P Sbjct: 55 PSPDDIRRWCNACGVP 70 >gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 476 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R +F + +R+E L+Q + G + S+++ +E + ++ ++ LA T D Sbjct: 6 DRKLFLGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVD 65 Query: 77 LWKL 80 L L Sbjct: 66 LRNL 69 >gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 30/51 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ AK++ +++ ++ G + ++S++E G + + + +A+ L Sbjct: 10 IRDLRRNAKVSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIANALKVS 60 >gi|15614688|ref|NP_242991.1| post-exponential-phase responses transcriptional regulator [Bacillus halodurans C-125] gi|10174744|dbj|BAB05844.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre) family) [Bacillus halodurans C-125] Length = 112 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 M+ + R E +L+ E+ R G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MMIGERVKKYRLEKELSLSELAERAGVAKSYLSSIERNIQTNPSIHFLEKISQVLDVSVE 60 Query: 79 KLLK 82 LL+ Sbjct: 61 SLLQ 64 >gi|23099979|ref|NP_693445.1| post-exponential-phase response transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778210|dbj|BAC14480.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Oceanobacillus iheyensis HTE831] Length = 108 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R E +++ E+ + G A+S++S +E +S +I + +++ L + + Sbjct: 1 MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNE 60 Query: 80 LL 81 ++ Sbjct: 61 II 62 >gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 76 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK L+Q + + G +++ I+++ETGK+ ++ +A+ L ++++ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCMYQIF 60 >gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] Length = 169 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK+ L+Q+++ + G ++ I++ E G ++ ++ ++ L+ LLK Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLK 70 >gi|281355350|ref|ZP_06241844.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281318230|gb|EFB02250.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 186 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R + +LT ++ R+G ++ +IS LE ++ ++ + ++A L + L Sbjct: 6 VAHKIKELRLQQQLTIDQLAARSGLSKGYISRLENFRTGASLRALNLVAAALGVEMIDLF 65 Query: 82 K 82 + Sbjct: 66 R 66 >gi|319426969|gb|ADV55043.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 108 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ R +Q+E+ R+G QS IS++E+G + + ++I LA LD L+ Sbjct: 12 LRDARIRKGFSQRELSARSGVPQSHISKIESGDVDLRMSSLIALARVLDLELF 64 >gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] Length = 379 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R ++Q+++ N + IS +E+G+ + + LA L + L Sbjct: 9 NKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYAPSTTIALRLAKALGCQVEDLF 66 >gi|86145397|ref|ZP_01063728.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. MED222] gi|85836974|gb|EAQ55094.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. MED222] Length = 207 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + L I R+ ++IR + +T +E RTG A+S +S++E + + Sbjct: 10 PSLTLAKETLDQNIEPLRL--GQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 68 TFQAMQKLAMGLQIDMPQLFEP 89 >gi|331091802|ref|ZP_08340634.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402701|gb|EGG82268.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] Length = 106 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R IR LTQ+ I N S IS +E + +++ ++ + + L+T Sbjct: 10 GEKLRIIRLSKNLTQEYIANVADVNTSHISNIENNRVKVSLSTLVQICNALNT 62 >gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 190 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +LT ++ +TG S IS LE + ++ ++ LA PL +L+ Sbjct: 11 VGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIRPTLEQLLPLARVYGVPLDELV 70 >gi|83945214|ref|ZP_00957563.1| hypothetical protein OA2633_00565 [Oceanicaulis alexandrii HTCC2633] gi|83851384|gb|EAP89240.1| hypothetical protein OA2633_00565 [Oceanicaulis alexandrii HTCC2633] Length = 240 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 M F + R+ TQ E + QS++S+LETGKS + + LA Sbjct: 1 MSFGAFLKARREALGWTQPEAAAKARIEQSYLSKLETGKSFPSEEVFERLAEAYG 55 >gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA] gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA] Length = 250 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---L 77 I ++ + +RK KLTQK++ TGF Q+ IS E G ++ ++ I A L+ L Sbjct: 3 ILGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYL 62 Query: 78 WKLLKP 83 + L KP Sbjct: 63 FDLAKP 68 >gi|268591080|ref|ZP_06125301.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313887|gb|EFE54340.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 104 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L + I N R+ L+ E+ + +Q +S +E G ++++ + +A++LD Sbjct: 5 LSPKEIVGGNIYKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQIANSLDI 64 Query: 76 PLWKLL 81 + LL Sbjct: 65 DINCLL 70 >gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] Length = 188 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ K+TQKE G ++ I + E+G+ + ID + +A+ L+ P +LL Sbjct: 8 GKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQELLS 67 Query: 83 P 83 P Sbjct: 68 P 68 >gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 203 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P + +R E KLT ++ G ++S +SE+E K+ I Sbjct: 14 AAPQPPGVTPPR---VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVA 70 Query: 67 IILAHTLDTPLWKLL 81 L + L L +L Sbjct: 71 WRLTNALGITLDELF 85 >gi|167841007|ref|ZP_02467691.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 194 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 13 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 72 >gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] Length = 172 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +++ N R +RKE +TQ+EI + G + +S E G + ++ ++ LA Sbjct: 10 KTEMIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNTMPDLAILVELADY 69 Query: 73 LDTPLWKLL 81 D + +++ Sbjct: 70 YDVDIREII 78 >gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E] Length = 206 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N RK L+ +E+ NR G + I ETG+ I D ++ +A LD L Sbjct: 8 VGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIAEALDVDPADL 66 >gi|308177557|ref|YP_003916963.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307745020|emb|CBT75992.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 191 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R+ + + + ++ + S +S +ETG I +D +I +A L+T L +L+ Sbjct: 13 QRIRNLRQNLGWSLESLASKASMSVSTLSRIETGSRRIALDQLIPIAKALNTSLDELV 70 >gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 149 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R + LTQ+E+ N+ + +S ETG++T N+D + +LA TL P+ LL+ Sbjct: 7 LPQLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLE 63 >gi|255654408|ref|ZP_05399817.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296449131|ref|ZP_06890918.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880891|ref|ZP_06904839.1| DNA-binding protein [Clostridium difficile NAP07] gi|296261950|gb|EFH08758.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428178|gb|EFH14077.1| DNA-binding protein [Clostridium difficile NAP07] Length = 183 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + IRKE L+ +I +G ++S +S++E + I + + + L Sbjct: 6 EIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVNPTISTLKKITNGLKISFTS 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|254422987|ref|ZP_05036705.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] gi|196190476|gb|EDX85440.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] Length = 584 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 30/51 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R++ K+TQ+ + + G +QSWI ++E G+ +I+ ++ + L L Sbjct: 534 IKAAREQQKITQRALASSLGKSQSWIRDVEKGRFSISFEDQVRLREALGIQ 584 >gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6] Length = 200 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ LT ++ + ++ +S++E G+++ +D + +A L + Sbjct: 14 ESVGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSAGMDTLARIARALGVSMSM 73 Query: 80 LL 81 L Sbjct: 74 LF 75 >gi|167565153|ref|ZP_02358069.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis EO147] Length = 183 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] Length = 168 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G ST++ + + + + + Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 81 L 81 + Sbjct: 71 V 71 >gi|126697922|ref|YP_001086819.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974024|ref|ZP_05270496.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091410|ref|ZP_05320888.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255099524|ref|ZP_05328501.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305380|ref|ZP_05349552.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313070|ref|ZP_05354653.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255515827|ref|ZP_05383503.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255648919|ref|ZP_05395821.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682132|ref|YP_003213417.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260685730|ref|YP_003216863.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519034|ref|ZP_07405381.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115249359|emb|CAJ67173.1| Transcriptional regulator, RmlC-type [Clostridium difficile] gi|260208295|emb|CBA60727.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260211746|emb|CBE02080.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + IRKE L+ +I +G ++S +S++E + I + + + L Sbjct: 6 EIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVNPTISTLKKITNGLKISFTS 65 Query: 80 LLK 82 L++ Sbjct: 66 LME 68 >gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 168 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G ST++ + + + + + Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 81 L 81 + Sbjct: 71 V 71 >gi|312961260|ref|ZP_07775765.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|311284918|gb|EFQ63494.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 262 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R IR++AKL+Q ++ TG +Q +S +ETG++ + L LD PL Sbjct: 8 GEYLRQIRRQAKLSQLDLALITGVSQRHLSCIETGRAKAGAATLHTLLTALDAPL 62 >gi|302870146|ref|YP_003838783.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315503577|ref|YP_004082464.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302573005|gb|ADL49207.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410196|gb|ADU08313.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 216 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ AK++ +++ + G + ++S++E G + + + LA L Sbjct: 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64 >gi|255292223|dbj|BAH89347.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292806|dbj|BAH89908.1| XRE family transcriptional regulators [uncultured bacterium] Length = 156 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R+ R L+ E+ R G + ++S+LE +S ++ + L L + Sbjct: 9 EPLRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNM 68 Query: 78 WKLL 81 +L Sbjct: 69 SELF 72 >gi|167754531|ref|ZP_02426658.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402] gi|237733830|ref|ZP_04564311.1| transcriptional regulator [Mollicutes bacterium D7] gi|167705363|gb|EDS19942.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402] gi|229383168|gb|EEO33259.1| transcriptional regulator [Coprobacillus sp. D7] Length = 135 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + +LTQ+ + + ++ IS E K+ +I ++I L+ L +LLK Sbjct: 4 AKKIKTARIKVELTQEHVADELQVSRQTISNWENAKTYPDIISIIKLSDLYQISLDELLK 63 >gi|307133110|ref|YP_003885126.1| putative transcriptional regulator [Dickeya dadantii 3937] gi|306530639|gb|ADN00570.1| Putative transcriptional regulator [Dickeya dadantii 3937] Length = 106 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + R L+QK++ G A + I+ E G +ID LA LD P Sbjct: 10 VFCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQQLADALDVP 69 Query: 77 L 77 L Sbjct: 70 L 70 >gi|258517094|ref|YP_003193316.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780799|gb|ACV64693.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 181 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK + + ++ + G ++ ++SELE T ++ + + L+ L Sbjct: 4 GIRIRELRKNSNINITQLAIKVGISRVYLSELERNIKTPPLETLERICSALNITLVDFFT 63 >gi|257140832|ref|ZP_05589094.1| DNA-binding regulatory protein [Burkholderia thailandensis E264] Length = 81 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE ++Q+ + + +S + ++E G+ + I N++ +A L +LL Sbjct: 17 LGAAIRARRKELVMSQEALADFAEIDRSHMGKIERGERNVTIMNIVRIARALQLLPSELL 76 >gi|149920973|ref|ZP_01909434.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] gi|149818245|gb|EDM77700.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] Length = 199 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+ R+ L+ + +G + + +SE+E + + +A L L LL+ Sbjct: 9 GKNIRSRRQALGLSLDALAQASGVSSTMLSEVERARKNPTVKLAYQIARALGCSLTDLLE 68 >gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 115 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK LTQ+++ G ++S+ISE+E+GK + + AHT++ P+ L++ Sbjct: 4 RLKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIE 61 >gi|107027580|ref|YP_625091.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693708|ref|YP_839241.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896954|gb|ABF80118.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651708|gb|ABK12348.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] Length = 180 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 >gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 91 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN ++RKE + Q E+ + G ++ IS +E G ++ + LA + + + Sbjct: 27 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSVLVALSLARVFEVKVEDIF 84 >gi|315149776|gb|EFT93792.1| putative flagellar protein FliS [Enterococcus faecalis TX0012] Length = 279 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R IRK+ LTQK++ S+ S +E ST ID + + L+ L + Sbjct: 1 MYGQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEF 59 Query: 81 L 81 + Sbjct: 60 M 60 >gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 490 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL- 80 + R R+ LTQ+++ + GF QS++S++E+G+ I +I + +A L + Sbjct: 21 GSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPEDVG 80 Query: 81 LKP 83 L P Sbjct: 81 LAP 83 >gi|257422321|ref|ZP_05599311.1| predicted protein [Enterococcus faecalis X98] gi|257164145|gb|EEU94105.1| predicted protein [Enterococcus faecalis X98] gi|315156032|gb|EFU00049.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 279 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R IRK+ LTQK++ S+ S +E ST ID + + L+ L + Sbjct: 1 MYGQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEF 59 Query: 81 L 81 + Sbjct: 60 M 60 >gi|257084941|ref|ZP_05579302.1| predicted protein [Enterococcus faecalis Fly1] gi|256992971|gb|EEU80273.1| predicted protein [Enterococcus faecalis Fly1] Length = 279 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R IRK+ LTQK++ S+ S +E ST ID + + L+ L + Sbjct: 1 MYGQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEF 59 Query: 81 L 81 + Sbjct: 60 M 60 >gi|288947755|ref|YP_003445138.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898271|gb|ADC64106.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 79 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R E L Q E+ R G Q++IS+ E G + I+ ++L L+T L Sbjct: 7 RKELGHRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRIEQAVVLTQALNTTLG 66 Query: 79 KLL 81 L+ Sbjct: 67 ALV 69 >gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ I +R E LTQ ++ G + IS +E G + ++ + +A L + L Sbjct: 5 EKKI-GKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSL 63 Query: 78 WKLL 81 + Sbjct: 64 KQFF 67 >gi|50084796|ref|YP_046306.1| putative transcription regulator protein [Acinetobacter sp. ADP1] gi|49530772|emb|CAG68484.1| putative transcription regulator protein [Acinetobacter sp. ADP1] Length = 190 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E T E+ NR+ +++ IS +E + + LA LD L L Sbjct: 10 QRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDITLVSLF 67 >gi|75761993|ref|ZP_00741910.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490526|gb|EAO53825.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 143 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + R++ +Q+ + + ++ +S+ ETGK+ NI +I L+ + + Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPNIGVIIDLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 66 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R++ L+Q+++ QS I +E G S+ + + LA L+ P+ + Sbjct: 1 MLGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGISSPTLKTLEKLARALEVPVHEF 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|304397398|ref|ZP_07379276.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304355016|gb|EFM19385.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ L+Q+ + + G S IS +E K + + + L L + Sbjct: 9 GRRLAQIRQTLGLSQRRVAEQAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|291460636|ref|ZP_06600026.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291416827|gb|EFE90546.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 107 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ + +TQKE+ RTG AQ+ IS+LE G + +I + LA + L P Sbjct: 44 ARQRSGMTQKELAERTGIAQADISKLEHGNANPSIRTLQRLAKGMGMVLKIEFAP 98 >gi|229829934|ref|ZP_04456003.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] gi|229791232|gb|EEP27346.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] Length = 211 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R +AKLTQ++ G ++ IS E KS +I +++ ++ L LLK Sbjct: 4 GSKIRKSRVDAKLTQEQAAEALGISRQTISNWENEKSYPDIVSVLKMSDLYRVSLDYLLK 63 >gi|271964064|ref|YP_003338260.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507239|gb|ACZ85517.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 277 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 27/68 (39%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P D F R R++A L+Q ++ RTGFA IS ETG+ D + Sbjct: 4 PKDLDPTTSPIAFFGYELRRYRQQAGLSQGKLARRTGFALGTISMAETGRRPPTEDFVRR 63 Query: 69 LAHTLDTP 76 L Sbjct: 64 CDEALGVE 71 >gi|227500450|ref|ZP_03930512.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098] gi|227217513|gb|EEI82832.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098] Length = 492 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE LTQ ++ TG ++ IS LE T +ID + + L + L + Sbjct: 17 RKEMGLTQAKLAEMTGINRAMISRLEQADYTPSIDQLQAIGEVLHFEIVDLFE 69 >gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 125 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + F + R L+Q ++ + ++ IS+ E G +T +++N++ LA + L Sbjct: 4 LQFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNISLDT 63 Query: 80 LL 81 L+ Sbjct: 64 LV 65 >gi|163790412|ref|ZP_02184843.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874316|gb|EDP68389.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 170 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +Q + + ++ IS+ E G S ++ N++ L++ + + +LL Sbjct: 3 LGERLKQSRTNKGFSQTNVADHLNISRQSISKWENGNSLPDLANLVKLSNYYEVSIDELL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1] gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1] Length = 180 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR ++Q+E+ R+G S IS++E ++ ++ + + + + Sbjct: 3 VGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEFF 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141] Length = 158 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|294509161|ref|YP_003566089.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352085|gb|ADE72409.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 80 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + R +A LTQ ++ + G + IS +E GK + + + + ++ L ++ Sbjct: 12 ILKNNVKTFRVQADLTQHQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYVVNRTLDEI 71 Query: 81 L 81 Sbjct: 72 F 72 >gi|311744324|ref|ZP_07718128.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312497|gb|EFQ82410.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 167 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R++A+L+ +++ + ++S++E G + + + +A L L Sbjct: 37 LGEYLREQRRQAQLSLRQLSEAADVSNPYLSQIERGLRRPSAEVLQQIAKALRISAESL 95 >gi|284043418|ref|YP_003393758.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947639|gb|ADB50383.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 89 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R +R+ +Q+ + + + +++ ++E G + N+ LA L+ Sbjct: 6 PELVALGARVRELRERVGKSQETLAHDSDELHWTYVGQIERGLRNVTFKNLRRLARGLEV 65 Query: 76 PLWKLLKP 83 + +L +P Sbjct: 66 DVAELFRP 73 >gi|282167052|gb|ADA81068.1| DNA-binding protein, putative [Staphylococcus aureus] Length = 182 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N R IR + +++ ++ T +++ + ++E G + I + +A L+ PL Sbjct: 6 EIIATNLRKIRNQKRMSLDDLSKLTSVSKAVLFQIEKGTTNPTISTLWKIAEGLNIPLSN 65 Query: 80 LL 81 ++ Sbjct: 66 II 67 >gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ +Q+++ + G + + + E KS +I N+I+L+ + L + Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIHNLILLSEMYNVTLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|217971592|ref|YP_002356343.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496727|gb|ACK44920.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 129 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE + Q + + G +Q+ S LE+GKST ++D + A L+ P +L Sbjct: 16 VANKRKEFGIEQSVMADCMGLSQASYSRLESGKSTFSVDQLFECAQALNIPAAELF 71 >gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 136 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ +I L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|167632540|ref|ZP_02390867.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|254685775|ref|ZP_05149634.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723182|ref|ZP_05184970.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. A1055] gi|254738245|ref|ZP_05195948.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742587|ref|ZP_05200272.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752560|ref|ZP_05204596.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761076|ref|ZP_05213100.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Australia 94] gi|167532838|gb|EDR95474.1| DNA-binding protein [Bacillus anthracis str. A0442] Length = 66 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E TQ+E+ R G ++ I+ LE K ++ +A+ + PL + Sbjct: 10 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF 61 >gi|165869157|ref|ZP_02213817.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167637409|ref|ZP_02395689.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170684835|ref|ZP_02876060.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704913|ref|ZP_02895378.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649881|ref|ZP_02932882.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565074|ref|ZP_03017995.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813967|ref|YP_002813976.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602589|ref|YP_002867433.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|164715883|gb|EDR21400.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514916|gb|EDR90282.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170129768|gb|EDS98630.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671095|gb|EDT21833.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083833|gb|EDT68892.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564391|gb|EDV18355.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227007141|gb|ACP16884.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266997|gb|ACQ48634.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 65 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E TQ+E+ R G ++ I+ LE K ++ +A+ + PL + Sbjct: 9 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF 60 >gi|153814674|ref|ZP_01967342.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|317501120|ref|ZP_07959326.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090138|ref|ZP_08339026.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848168|gb|EDK25086.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|316897507|gb|EFV19572.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402084|gb|EGG81656.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] Length = 124 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK+ TQ + + ++ S ETGK ++D +I +A+ L LL Sbjct: 6 LAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETGKRIPDLDIIIRIANIYHISLENLL 65 Query: 82 K 82 Sbjct: 66 T 66 >gi|118477255|ref|YP_894406.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416480|gb|ABK84899.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] Length = 181 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 24/48 (50%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 LT KE+ S +S++E G + +I + +LA LD P + L Sbjct: 18 GLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65 >gi|108800307|ref|YP_640504.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119869435|ref|YP_939387.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126435930|ref|YP_001071621.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108770726|gb|ABG09448.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119695524|gb|ABL92597.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126235730|gb|ABN99130.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 193 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ T +E+ R+ S +S LE+GK + +D++ LA L +LL+ Sbjct: 17 KRLRELRRQRGFTLEEVAARSAIDVSTLSRLESGKRRLALDHLPRLAAALAVTTDELLR 75 >gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 482 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q ++ G + S+++ +E + ++ ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|325264449|ref|ZP_08131179.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030111|gb|EGB91396.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 100 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +R LTQ ++ R G +S IS ETG + D +I ++ LL Sbjct: 4 FGNTLKTLRLLNNLTQAKLAQRLGVTKSVISAYETGLRMPSYDILISISQIFKVTTDYLL 63 >gi|306823918|ref|ZP_07457292.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309802457|ref|ZP_07696564.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] gi|304552916|gb|EFM40829.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221057|gb|EFO77362.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] Length = 408 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R +TQ+++ G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 205 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +RK L+ KE+ R + +S++E S+ ++ + LA + D PL Sbjct: 25 LGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLSSPSVRTLNKLATSFDVPL 80 >gi|255292272|dbj|BAH89394.1| XRE family transcriptional regulator [uncultured bacterium] Length = 172 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R+ R L+ E+ R G + ++S+LE +S ++ + L L + Sbjct: 21 EPLRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNM 80 Query: 78 WKLL 81 +L Sbjct: 81 SELF 84 >gi|222081095|ref|YP_002540458.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725774|gb|ACM28863.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + R+ M R +R +T KE+ R+G + S IS++E + + +N+I LA Sbjct: 3 DTATEERDEMDLGKRVRALRANIDMTIKEVSLRSGMSASAISKIENNQLSPTYENIIKLA 62 Query: 71 HTLDTPLWKLL 81 L + +L Sbjct: 63 RGLGVDISELF 73 >gi|182677050|ref|YP_001831196.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182632933|gb|ACB93707.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 488 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Query: 6 RDEPHLSDAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + H + R IF + +R+E ++TQ + + S+++ +E + I + Sbjct: 3 QTLAHSAGQADASRKIFAGPRLKRLRRERQITQARMAEELNVSPSYLNLMERNQRPITVQ 62 Query: 65 NMIILAHTLDTPLWKLL 81 +I L L Sbjct: 63 VLIRLTDVYGVDPRDFL 79 >gi|171741654|ref|ZP_02917461.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283455032|ref|YP_003359596.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] gi|171277268|gb|EDT44929.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283101666|gb|ADB08772.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] Length = 408 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R +TQ+++ G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|154500312|ref|ZP_02038350.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] gi|150271044|gb|EDM98318.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] Length = 111 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ LT++++ + +LE G S ++ID +I L+H++ P+ +L Sbjct: 10 GQRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMHLPMEYIL 68 >gi|45862267|gb|AAS78882.1| TrbA [Cloning vector pLAFR] gi|295443857|dbj|BAJ06609.1| TrbA [Cloning vector pKS800] Length = 128 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+ E+ R G + S++S+L GK+ ++ M +A Sbjct: 11 QIFFTNILRLLDERGMTKHELSERAGVSISFLSDLTNGKANPSLKVMEAIADA 63 >gi|29350141|ref|NP_813644.1| hypothetical protein BT_4733 [Bacteroides thetaiotaomicron VPI-5482] gi|253571670|ref|ZP_04849076.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298384450|ref|ZP_06994010.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|29342053|gb|AAO79838.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251838878|gb|EES66963.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|298262729|gb|EFI05593.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 101 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+AK+TQ E+ R G +S+IS +E+G++ + + + L Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 92 >gi|332981042|ref|YP_004462483.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698720|gb|AEE95661.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 209 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++R +LTQ+++ + G ++ IS ET ++ N D + + L+ + LL Sbjct: 4 FGKLLMDLRNAKQLTQEDVAEKLGVSRQTISSWETNRTKPNYDQIKQICAILEVDMNTLL 63 >gi|325962046|ref|YP_004239952.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468133|gb|ADX71818.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 504 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+A LT ++ G A S +S +E GK + + LA L+ + +LL Sbjct: 36 LGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQHLASALNVSIDQLL 95 >gi|228942395|ref|ZP_04104933.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981964|ref|ZP_04142258.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228777725|gb|EEM25998.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228817236|gb|EEM63323.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 4 LYLNNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63 Query: 81 L 81 Sbjct: 64 F 64 >gi|166030371|ref|ZP_02233200.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] gi|166029840|gb|EDR48597.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] Length = 159 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N RK+ K+TQKE+ + G + IS E G ++I+ID + + + Sbjct: 6 KETVAKNLLYYRKKNKITQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIFGISVN 65 Query: 79 KL 80 + Sbjct: 66 DM 67 >gi|126652726|ref|ZP_01724878.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] gi|126590415|gb|EAZ84534.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] Length = 134 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + + RK KLTQ+++ + + IS E G ST + + +++L+ LD Sbjct: 1 MMFNHRLKAARKAKKLTQEQLAGKLQTTKGTISNYENGHSTPSNEMLVLLSKILDVTTDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257076425|ref|ZP_05570786.1| transcriptional regulatory protein [Ferroplasma acidarmanus fer1] Length = 192 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +RK ++QKE+ +G +QS+I+ LE G+ D + + L+ Sbjct: 6 EELRKMRKSLGISQKELARISGVSQSYIARLEKGEINPAYDKVRKIFEYLN 56 >gi|326332010|ref|ZP_08198295.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] gi|325950148|gb|EGD42203.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium Broad-1] Length = 147 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R A+++ +++ ++ G + ++S++E G + + + +A L ++ Sbjct: 13 LGEYLKEQRISAEMSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIAKALRISAEQV 71 >gi|261881030|ref|ZP_06007457.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270332210|gb|EFA42996.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 101 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RKEAK+TQ E+ + G +S+IS++E G + L ++L Sbjct: 45 QARKEAKMTQTELAEKAGTTKSYISKIENGLIEPGVGLFFRLVNSLG 91 >gi|167618929|ref|ZP_02387560.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 192 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S+ + LA+ L L Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|160915348|ref|ZP_02077560.1| hypothetical protein EUBDOL_01356 [Eubacterium dolichum DSM 3991] gi|158432739|gb|EDP11028.1| hypothetical protein EUBDOL_01356 [Eubacterium dolichum DSM 3991] Length = 177 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R LT +E+ +R+ + +IS++E ++ +I + L L T L K Sbjct: 4 GAKLKALRLRNDLTLEEVASRSELTKGFISQVERNLTSPSISTLEYLLEALGTNLADFFK 63 >gi|150018305|ref|YP_001310559.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904770|gb|ABR35603.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+++ + G + I +E GK ++ I + L L + Sbjct: 5 KMKSARASMDLSQEQLADIVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDIF 61 >gi|281427992|ref|YP_003354946.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis KF147] gi|281376619|gb|ADA66104.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis KF147] Length = 201 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK+ TQ+ + + I +E G + +++D + +++ L P+ +L + Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61 >gi|281491183|ref|YP_003353163.1| XRE family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374924|gb|ADA64442.1| Transcriptional regulator, XRE family [Lactococcus lactis subsp. lactis KF147] Length = 201 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK+ TQ+ + + I +E G + +++D + +++ L P+ +L + Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61 >gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408] gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408] Length = 163 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + H + E F + +RKE TQ+E+ + + +S E G+S + +N Sbjct: 4 KALLHNERKSIYE-GFFSKKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHEN 62 Query: 66 MIILAHTLDTPL 77 + LA L Sbjct: 63 VYCLAKLYGQTL 74 >gi|261350497|ref|ZP_05975914.1| toxin-antitoxin system, antitoxin component, Xre family [Methanobrevibacter smithii DSM 2374] gi|288861280|gb|EFC93578.1| toxin-antitoxin system, antitoxin component, Xre family [Methanobrevibacter smithii DSM 2374] Length = 108 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +R+E TQ+++ N G QS +S++E G+ N+ + L + L Sbjct: 4 IVGTTLNKLRRENGYTQEQVSNYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|221195415|ref|ZP_03568470.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221184602|gb|EEE16994.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 77 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +R +A LTQ + R QS++S++E+G+ + + + A L ++KL Sbjct: 8 LVGRSLRKLRCDAGLTQVAVAQRLRTPQSFVSKVESGERGLKLGEVYSYAEALGIDVFKL 67 Query: 81 LK 82 ++ Sbjct: 68 VE 69 >gi|197301649|ref|ZP_03166720.1| hypothetical protein RUMLAC_00375 [Ruminococcus lactaris ATCC 29176] gi|197299276|gb|EDY33805.1| hypothetical protein RUMLAC_00375 [Ruminococcus lactaris ATCC 29176] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E++ N+ + +R A L+Q ++ G +++ IS +ETG+ +IL LD Sbjct: 1 MKEQLHLKNHLKEVRTAANLSQAQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] Length = 126 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N +R+ A L+QK++ + G +Q+ I+ E G+ T ++ ++ P+ ++ P Sbjct: 8 NKLAQLRQNAHLSQKQLAQKLGVSQASINYWENGQRTPSVKAAQKISDYFKMPISEIFSP 67 >gi|146322242|ref|YP_001174729.1| hypothetical protein pGdh442_p22 [Lactococcus lactis] gi|145968733|gb|ABQ00011.1| hypothetical protein [Lactococcus lactis] Length = 201 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK+ TQ+ + + I +E G + +++D + +++ L P+ +L + Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61 >gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ AK++ +++ + G + ++S++E G + + + LA L Sbjct: 14 IRDLRRNAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64 >gi|153002768|ref|YP_001368449.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|160877511|ref|YP_001556827.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|151367386|gb|ABS10386.1| transcriptional regulator, XRE family [Shewanella baltica OS185] gi|160863033|gb|ABX51567.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315269711|gb|ADT96564.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK ++Q ++ +S++ +E G+ I ++ LA L + LL Sbjct: 8 FGAKLREERKRLGISQDKMALLAEIDRSYVGRIERGEVNITLEKAYQLAEVLGCDIRVLL 67 >gi|89076037|ref|ZP_01162400.1| putative transcriptional regulator, [Photobacterium sp. SKA34] gi|89048272|gb|EAR53853.1| putative transcriptional regulator, [Photobacterium sp. SKA34] Length = 208 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + ++ ++ I ++ + IR LT +E RTG A+S +S++E + + Sbjct: 11 PSMRIEKTQAAEHIAPLKL--GERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQISP 68 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 69 TYQAMQKLATGLAIDIPQLFEP 90 >gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH] gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU] gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH] gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU] gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 202 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 >gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 139 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N + RK A LTQKE+ + G A+ I + E+ K + ++ +A L+ L+ Sbjct: 1 MSVGDNIKKARKNAGLTQKELAEKCGAAEITIRQYESSKREPRNEQLMKIARLLNVELYD 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 158 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 159 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + LA L L Sbjct: 9 LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67 >gi|257068924|ref|YP_003155179.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] gi|256559742|gb|ACU85589.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Brachybacterium faecium DSM 4810] Length = 517 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ + LTQ ++ + G +QS ++ +E G+ + ++ + + LD+ L L Sbjct: 21 IRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQNLTLETLSKIGSALDSELVGL 75 >gi|255284549|ref|ZP_05349104.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469] gi|255264903|gb|EET58108.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469] Length = 505 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RKE LTQ+++ TG ++ +S LE +I + L L +L Sbjct: 12 LLAETTARLRKEKSLTQQQLAELTGINRAMLSRLEKQNYLPSIPQLEKLGEILGFEPAEL 71 Query: 81 LK 82 Sbjct: 72 FT 73 >gi|302345887|ref|YP_003814240.1| putative toxin-antitoxin system, antitoxin component, Xre family [Prevotella melaninogenica ATCC 25845] gi|302149386|gb|ADK95648.1| putative toxin-antitoxin system, antitoxin component, Xre family [Prevotella melaninogenica ATCC 25845] Length = 103 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 30/53 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RK+ K+TQ+++ ++ G + +IS +E G S + + + +A+ L Sbjct: 43 YAELLKEQRKQQKMTQQQLADKIGKKREYISNIERGNSDMQLSTFMQIANALG 95 >gi|229179916|ref|ZP_04307262.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] gi|228603597|gb|EEK61072.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] Length = 277 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ +I++ + + L LL Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQGVSKWENGQGFPETGKLIMIGNVFEVSLDYLL 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGV 59 >gi|218676580|ref|YP_002395399.1| predicted transcriptional regulator [Vibrio splendidus LGP32] gi|218324848|emb|CAV26582.1| predicted transcriptional regulator [Vibrio splendidus LGP32] Length = 207 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + L I R+ ++IR + +T +E RTG A+S +S++E + + Sbjct: 10 PSLTLAKETLDQNIEPLRL--GQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 68 TFQAMQKLAMGLQIDMPQLFEP 89 >gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108] gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 115 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N +N+RK LTQ+++ RTG ++ I ET + +++++ +LA +T Sbjct: 2 KTTVGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|167566464|ref|ZP_02359380.1| gp68 [Burkholderia oklahomensis EO147] gi|167574272|ref|ZP_02367146.1| gp68 [Burkholderia oklahomensis C6786] gi|237507945|ref|ZP_04520660.1| gp68 [Burkholderia pseudomallei MSHR346] gi|235000150|gb|EEP49574.1| gp68 [Burkholderia pseudomallei MSHR346] Length = 128 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++P Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIEP 123 >gi|163855579|ref|YP_001629877.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163259307|emb|CAP41607.1| predicted transcriptional regulator [Bordetella petrii] Length = 97 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R E + Q+E+ G A+S + ++E G+ + ++ ++ L +L+ Sbjct: 25 FGKAVRAARVEQGIAQEELGAMAGIARSHMGKIERGEHMPTLALILKISVALRISAAELM 84 >gi|163841313|ref|YP_001625718.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162954789|gb|ABY24304.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 194 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R + + + + S +S +ETG I +D ++ LA L L +L++ Sbjct: 15 QRIRAARLARGWSLDSLAAKCALSPSTLSRIETGNRRIALDQLVPLAKALGMTLDELVE 73 >gi|86158292|ref|YP_465077.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774803|gb|ABC81640.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 81 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D E R R+ +TQ+ + + +++S +E G ++ +A Sbjct: 10 DPRREELRRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARA 69 Query: 73 LDTPLWKLL 81 L P +++ Sbjct: 70 LGIPATRIV 78 >gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKL 80 F N +++R+E LTQKE+ + G + IS E G + N LA D + L Sbjct: 3 FGNKIKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRTMKNFEKLAEIFDVNVNYL 62 Query: 81 LK 82 L Sbjct: 63 LT 64 >gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 210 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +TQ E+ + G Q + ET + I +D MI ++ L+ L LL Sbjct: 4 QIAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIRMDKMIEMSEILNVSLAYLL 60 >gi|226304066|ref|YP_002764024.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226183181|dbj|BAH31285.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 214 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ +LT ++ G + ++S+LE ++ +I + L+ P+ L + Sbjct: 19 GARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGSLFE 78 >gi|254436317|ref|ZP_05049823.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] gi|207088007|gb|EDZ65280.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] Length = 132 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ N + R LTQ + + +QS+++ +E G+ + + +A L Sbjct: 59 VKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVKALKQIAKVLGV 118 Query: 76 PLWKLL 81 + L+ Sbjct: 119 DIDDLV 124 >gi|254385553|ref|ZP_05000879.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194344424|gb|EDX25390.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 126 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R++A+L+ +++ G + ++S++E G + D + LA L L Sbjct: 9 LGEYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 67 >gi|150398411|ref|YP_001328878.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029926|gb|ABR62043.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 125 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R +R+ +TQKE+ G + +++S LE GK + D + +A + Sbjct: 4 FGEAVRELRRRKGVTQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNV 58 >gi|30263168|ref|NP_845545.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528533|ref|YP_019882.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186017|ref|YP_029269.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52142313|ref|YP_084521.1| helix-turn-helix family DNA-binding protein [Bacillus cereus E33L] gi|65320496|ref|ZP_00393455.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229012438|ref|ZP_04169613.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|30257802|gb|AAP27031.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503681|gb|AAT32357.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179944|gb|AAT55320.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51975782|gb|AAU17332.1| DNA-binding protein, helix-turn-helix family [Bacillus cereus E33L] gi|228748797|gb|EEL98647.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 69 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E TQ+E+ R G ++ I+ LE K ++ +A+ + PL + Sbjct: 13 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF 64 >gi|53721509|ref|YP_110494.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126443308|ref|YP_001061732.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126457392|ref|YP_001074677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1106a] gi|134282910|ref|ZP_01769612.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|167921777|ref|ZP_02508868.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei BCC215] gi|226196538|ref|ZP_03792119.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|237509401|ref|ZP_04522116.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242312333|ref|ZP_04811350.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254198938|ref|ZP_04905356.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|254265312|ref|ZP_04956177.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] gi|254296722|ref|ZP_04964176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|52211923|emb|CAH37928.1| putative MerR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126222799|gb|ABN86304.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126231160|gb|ABN94573.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106a] gi|134245558|gb|EBA45650.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|157806591|gb|EDO83761.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|169657110|gb|EDS88504.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|225931414|gb|EEH27420.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|235001606|gb|EEP51030.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242135572|gb|EES21975.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254216314|gb|EET05699.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] Length = 183 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|21223969|ref|NP_629748.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|3192007|emb|CAA19406.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 63 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R + ++Q + R G + ++S E G+ N NM++L L L ++ Sbjct: 4 GRKLKEARNKRGMSQAAVAARMGLSGLYVSYWENGRYAPNGVNMVLLLRALGCELEEV 61 >gi|293369656|ref|ZP_06616234.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|292635360|gb|EFF53874.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] Length = 101 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+AK+TQ E+ R G +S+IS +E+G++ + + + L Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIINALG 92 >gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis M50/1] Length = 382 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + L Q E + G + +S+ E G S +++N+ +++ LD + Sbjct: 5 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLSCPSVENLCVISEILDVSIDT 64 Query: 80 LL 81 L+ Sbjct: 65 LI 66 >gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891] gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891] Length = 182 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ +R++A L+Q+E+ R G +IS++E + ++ ++ L + T + + Sbjct: 6 GTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEFF 64 >gi|212695608|ref|ZP_03303736.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM 7454] gi|212677281|gb|EEB36888.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM 7454] Length = 68 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ N+ + +RKE +Q+++ + G +++ IS +ETG+ +IL L+ Sbjct: 3 DKLVLKNHLKEVRKEKDYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|86751307|ref|YP_487803.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574335|gb|ABD08892.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 481 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q +I G + S+I+ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] Length = 202 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 >gi|326623794|gb|EGE30139.1| regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 231 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + E+ G + IS LETGK + + LA L + +L Sbjct: 4 GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|322714235|gb|EFZ05806.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 231 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + E+ G + IS LETGK + + LA L + +L Sbjct: 4 GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 71 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN RN+R EA LTQ+E+ + G + ++ +E K + ++ +A L PL + Sbjct: 7 NNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64 >gi|300854554|ref|YP_003779538.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434669|gb|ADK14436.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 190 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N + +R + KL+ + +G ++ I ++E G+S I+ + LA+ L P L Sbjct: 6 IIASNLKKLRSDKKLSLSNLSELSGVSKVMIGQIERGQSNPTINTIWKLANGLKVPYTVL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 113 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R+ L+Q ++ N G +Q +S++E G +N+ + L Sbjct: 5 GQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGNRNLNLSLLDKLCALYG 56 >gi|194291408|ref|YP_002007315.1| transcriptional regulator Xre family [Cupriavidus taiwanensis LMG 19424] gi|193225312|emb|CAQ71256.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 198 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 76 >gi|168188074|ref|ZP_02622709.1| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169294075|gb|EDS76208.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 184 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N + IR + ++ + TG +++ + ++E G+S + + +A L Sbjct: 7 IIGKNLKTIRNKKNMSLDNVCKLTGVSKAMLGQIERGESNPTVSTLWRIATGLKIS 62 >gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B] gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B] gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 231 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + E+ G + IS LETGK + + LA L + +L Sbjct: 4 GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 259 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + E+ G + IS LETGK + + LA L + +L Sbjct: 4 GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|28563950|ref|NP_788259.1| hypothetical protein OB3538 [Oceanobacillus iheyensis HTE831] Length = 81 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R RK+ LTQ+E+ I +LE G+ T + + D + +L + Sbjct: 2 GSKMREARKKKGLTQEEVAEICNLDDKHIGKLERGEKTPLVTTLFKYWKATDIDVNRLFQ 61 >gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51] gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 63 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RKE ++Q+++ R ++ I+ +E K + LA L + +L Sbjct: 3 NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELF 60 >gi|294499973|ref|YP_003563673.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|295705350|ref|YP_003598425.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294349910|gb|ADE70239.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294803009|gb|ADF40075.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 183 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N +RK LT ++ TG +++ ++++E GKS+ + + +A+ L Sbjct: 7 IIAKNLVKLRKNRNLTLDQVSELTGVSKAMLAQIEKGKSSPTVTTLWKIANGLQVS 62 >gi|291618017|ref|YP_003520759.1| PuuR [Pantoea ananatis LMG 20103] gi|291153047|gb|ADD77631.1| PuuR [Pantoea ananatis LMG 20103] Length = 185 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ L+Q+ + G S IS +E K + + + L L + Sbjct: 9 GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] Length = 118 Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I ++RKE KLTQ++I G ++ IS+ E G + +N+ LA + P+ L Sbjct: 3 IIGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPIDYL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60] gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60] Length = 222 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + RK A LTQ E+ ++G Q IS+LE+G + ++ +A + Sbjct: 3 ETIGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESG-RNESSTKLVEMAEAMGVS 58 >gi|256833482|ref|YP_003162209.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] gi|256687013|gb|ACV09906.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] Length = 141 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 ++D ER+ +IR+ ++Q+E+ + TG ++ IS +E G + N ++ Sbjct: 4 KKIADMTQAERVEAAATIADIRERLGISQQELSDATGISRQTISNIERGATRPNSKSLEK 63 Query: 69 LAHTLDTP 76 + L Sbjct: 64 IFEALGVS 71 >gi|237736495|ref|ZP_04566976.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229421537|gb|EEO36584.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 187 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R KLT KE+ + G S +S++E +I + ++ LD PL+ Sbjct: 10 LGKKIQNYRLNKKLTIKELSEKIGMTSSMLSQIERDLVNPSIATLRAISKALDVPLFMFF 69 Query: 82 K 82 K Sbjct: 70 K 70 >gi|254502300|ref|ZP_05114451.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438371|gb|EEE45050.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 100 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RK LT E+ R G + W+S++E G S ++ +++ +A D P L Sbjct: 4 LGADLRALRKTKGLTLTELAERLGKSVGWLSQIERGISKLSSEDIDRMAGVFDVPPSLL 62 >gi|218185799|gb|EEC68226.1| hypothetical protein OsI_36225 [Oryza sativa Indica Group] Length = 200 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ RK+ KL+ E+ R ++ + E+E G + +I + LA L + ++ Sbjct: 22 VANRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81 >gi|210614628|ref|ZP_03290239.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] gi|210150618|gb|EEA81627.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] Length = 118 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LTQ+E+ + + + I+ +E G+ + + LA L L L+ Sbjct: 9 LGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPLSLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|124486416|ref|YP_001031032.1| adenine deaminase [Methanocorpusculum labreanum Z] gi|124363957|gb|ABN07765.1| helix-turn-helix domain protein [Methanocorpusculum labreanum Z] Length = 347 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + RK + LTQ+E+ + IS+ E GK + + +I L+ L + Sbjct: 1 MFGERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYF 60 Query: 81 LK 82 + Sbjct: 61 FR 62 >gi|38234037|ref|NP_939804.1| putative DNA-binding protein [Corynebacterium diphtheriae NCTC 13129] gi|38200299|emb|CAE49984.1| Putative DNA-binding protein [Corynebacterium diphtheriae] Length = 109 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 22 PEPLLREALGAALRAFRADKGITLRELAETSRVSPGYLSELERGRKEVSSELLASVCHAL 81 Query: 74 DTPLWKLL 81 T + +L Sbjct: 82 GTSVSDVL 89 >gi|91978515|ref|YP_571174.1| hypothetical protein RPD_4054 [Rhodopseudomonas palustris BisB5] gi|91684971|gb|ABE41273.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB5] Length = 480 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q +I G + S+I+ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|325104005|ref|YP_004273659.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972853|gb|ADY51837.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 75 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ +TQ++++ TG I +E ++ ++I ++ ++A L + +LL Sbjct: 14 VGKRLMEIREAKNITQEKLQELTGLDIRQIGRIERAETNVSISSIKLIADCLKISVSELL 73 >gi|288800505|ref|ZP_06405963.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 299 str. F0039] gi|288332718|gb|EFC71198.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 299 str. F0039] Length = 102 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK+AK+TQ E+ R G +S+IS++E G ++ L + L Sbjct: 40 AQILLQARKDAKVTQSELAQRVGTTKSYISKIENGVIEPSVGLFFRLINALG 91 >gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 509 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|163848207|ref|YP_001636251.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526115|ref|YP_002570586.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669496|gb|ABY35862.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449994|gb|ACM54260.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 181 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +R+E LT +E+ +G S++S LE K I++ N+ LA + Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 80 LLK 82 + Sbjct: 61 FFE 63 >gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 107 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK L+Q+E+ + ++ IS+ ETGKS D +I+L+ D L LLK Sbjct: 7 IKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDTLLK 63 >gi|15613507|ref|NP_241810.1| transcriptional regulator [Bacillus halodurans C-125] gi|10173559|dbj|BAB04663.1| transcriptional regulator [Bacillus halodurans C-125] Length = 107 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++RK K T E+ R+G +++++LE G+ ++++ + + L+ W L+ Sbjct: 8 GSQIRSLRKGNKWTLSELSKRSGVTLNYLAQLERGEVNVSVNKLDKVLQALNVE-WSLVV 66 Query: 83 P 83 P Sbjct: 67 P 67 >gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7] gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus tokodaii str. 7] Length = 515 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 IR++ ++ ++ G ++S + E+E GK + NI + +A+ L +L+ Sbjct: 6 GKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELIT 65 >gi|330847157|gb|AEC46565.1| hypothetical transcriptional repressor [Xanthomonas alfalfae subsp. citrumelonis] Length = 116 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 F + R L+QKE+ R G A I++ E GK ++ LA L P Sbjct: 19 FARRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPKLETAERLAQALGIP 77 >gi|325662674|ref|ZP_08151271.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086418|ref|ZP_08335498.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471013|gb|EGC74240.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406184|gb|EGG85707.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 65 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q ++ T + I +E G ++ I + L L L Sbjct: 5 KLKIARMEQGLSQVQLAEMTDVTRQTIGMIEAGDFNPSLKLCIRICKALGKTLDDLF 61 >gi|282878487|ref|ZP_06287271.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] gi|281299393|gb|EFA91778.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella buccalis ATCC 35310] Length = 101 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RKEAK+TQ E+ + G +S+IS++E G + L ++L Sbjct: 45 QARKEAKMTQTELAEKAGTTKSYISKIENGLIEPGVGLFFRLVNSLG 91 >gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N+RKE L+Q+ + + + IS+ E + ++ L+ P+ LL Sbjct: 3 FGEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDFLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|257437719|ref|ZP_05613474.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257200026|gb|EEU98310.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 95 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RK + LTQKE+ RTG AQ+ IS+LE G + ++ + LA + + P Sbjct: 37 ARKVSGLTQKELSERTGIAQADISKLENGNANPSLRTLQRLAAGMGMQVKIEFIP 91 >gi|227811902|ref|YP_002811912.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|227011044|gb|ACP07255.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] Length = 207 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T +E RTG A+S +S++E + + M AH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKFAHGLQIEM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|149374604|ref|ZP_01892378.1| transcriptional regulator, XRE family protein [Marinobacter algicola DG893] gi|149361307|gb|EDM49757.1| transcriptional regulator, XRE family protein [Marinobacter algicola DG893] Length = 267 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E F + R R+ ++Q ++ + +S +ETG+S D ++ LA TL+ PL Sbjct: 13 EHSAFGHKLRYWRRHRGMSQLDLALEADISPRHLSFIETGRSRPKRDLVLKLAVTLEVPL 72 Query: 78 WK 79 + Sbjct: 73 RE 74 >gi|17230004|ref|NP_486552.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|423971|pir||A47082 probable transcription regulator PatB - Anabaena sp gi|142067|gb|AAB59013.1| PatB [Nostoc sp. PCC 7120] gi|17131604|dbj|BAB74211.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 529 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +++R + + RK L+Q+E+ TG +QSWI ++E G+ Sbjct: 456 KKQRRTAKSRQKLKTAGDLVGEQILQARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAK 515 Query: 63 IDNMIILAHTLDT 75 +++ +L L Sbjct: 516 LEDQTLLRKVLHI 528 >gi|154248374|ref|YP_001419332.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162459|gb|ABS69675.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 203 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ ++ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 21 LGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDMTVERVL 80 >gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 120 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK+ + +Q+++ + G + IS+ E+ + +I+N+I L+ + LLK Sbjct: 5 ERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDYLLK 63 >gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 167 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|218282728|ref|ZP_03488925.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989] gi|218216373|gb|EEC89911.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989] Length = 177 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LT +E+ NR+ + ++S+LE ++ NI + + L T L + Sbjct: 4 GKKLKELRTQNGLTLEELANRSELTKGFLSQLERDLTSPNISALENILEALGTNLADFFQ 63 >gi|146341478|ref|YP_001206526.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194284|emb|CAL78306.1| putative transcriptional regulator, with HTH domain (N-terminal) and a RmlC-like cupin domain (C-terminal) [Bradyrhizobium sp. ORS278] Length = 221 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LT K++ +TG A S +S++E G ++ D ++ L L + +L Sbjct: 17 LGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKLLQLTSGLQMDIAELF 76 Query: 82 KP 83 P Sbjct: 77 SP 78 >gi|134101979|ref|YP_001107640.1| hypothetical protein SACE_5523 [Saccharopolyspora erythraea NRRL 2338] gi|133914602|emb|CAM04715.1| hypothetical protein SACE_5523 [Saccharopolyspora erythraea NRRL 2338] Length = 5856 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + + +R+ AKL+Q+ +G +++ IS+ ETG+ +++ + L + D Sbjct: 1762 RGVLGARLKLLRERAKLSQRGAAAVSGVSRTRISDFETGRDVPSVEKLGALLNVYDVS 1819 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER+ + +R A L+Q++ +G IS E G+ + + L D Sbjct: 1591 SATERISLGARLKTLRDAAGLSQRDAATLSGVDHREISHYELGERVPSEQRLGALLDAYD 1650 Query: 75 TPLWK 79 P+ + Sbjct: 1651 VPVAE 1655 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 13 DAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 DA+ R+ + + +R+ AKL+Q +G +++ IS ETG++ +++ + L Sbjct: 1271 DAVDPTRLSGVLGARLKLLRERAKLSQCGAAAVSGVSRTRISAGETGRAVPSVEQLGALL 1330 Query: 71 HTLDTP 76 + D Sbjct: 1331 NVYDVS 1336 Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRT---GFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +R+ A L+Q+ + G Q+ IS E+G++ +++ + L + + Sbjct: 1678 LGSKLTMLREAAGLSQRAAATQMRIDGINQASISAFESGRAVPSVERLGALLNVYRVSIE 1737 Query: 79 K 79 + Sbjct: 1738 E 1738 Score = 38.1 bits (87), Expect = 0.47, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 8/69 (11%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIR-------NRTGFAQSWISELETGKSTINIDNMIILA 70 +R++ + +RK KL Q++I G AQS +S +E+G+ N ++I+ Sbjct: 1108 QRVVLGAALKRLRKAKKLAQRDIATWLKEGGEDRG-AQSTVSLIESGRYPPNRRELLIML 1166 Query: 71 HTLDTPLWK 79 + + Sbjct: 1167 NAYGVSREE 1175 >gi|85707180|ref|ZP_01038267.1| transcriptional regulator, putative [Roseovarius sp. 217] gi|85668339|gb|EAQ23213.1| transcriptional regulator, putative [Roseovarius sp. 217] Length = 436 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R++ R R + Q ++ + G + S+++ +E I ++ LA L Sbjct: 1 MPDRLMIGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEALKV 60 Query: 76 PLWKLLK 82 +L + Sbjct: 61 EPSQLTQ 67 >gi|170736981|ref|YP_001778241.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819169|gb|ACA93751.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 180 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 >gi|300871532|ref|YP_003786405.1| MerR family transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300689233|gb|ADK31904.1| transcriptional regulator, MerR family [Brachyspira pilosicoli 95/1000] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK K+T + G + ++ +E G I++ + +A L+T LL Sbjct: 10 LGYNIRLLRKSKKMTIDALAEHAGVSSKYLQGIEVGNRNISVKRLNKIARALETTPESLL 69 Query: 82 K 82 Sbjct: 70 T 70 >gi|299146496|ref|ZP_07039564.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|298516987|gb|EFI40868.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 101 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+AK+TQ E+ R G +S+IS +E+G++ + + + L Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 92 >gi|296876650|ref|ZP_06900698.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|312867662|ref|ZP_07727868.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|322389318|ref|ZP_08062877.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|296432152|gb|EFH17951.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|311096725|gb|EFQ54963.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|321143982|gb|EFX39401.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 66 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R L+Q + G ++ I+ +E GK ++D I LA L T L L Sbjct: 2 NRVKEYRVNLGLSQLALAKSIGVSRQTINMIENGKYNPSLDLCINLAKELGTDLNSLF 59 >gi|227508341|ref|ZP_03938390.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192159|gb|EEI72226.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 237 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RKE LTQK++ + ++ IS E G++ + MI L+ + + LLK Sbjct: 28 KKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIFEIKIDDLLK 86 >gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 182 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +A ++ + G A+S +S+LE G+ +++ + +A L+ P L Sbjct: 6 LIAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGNPSVETLWAIASALNVPFSFL 65 Query: 81 LK 82 + Sbjct: 66 FE 67 >gi|116491838|ref|YP_803573.1| XRE family transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|116101988|gb|ABJ67131.1| Transcriptional regulator, xre family [Pediococcus pentosaceus ATCC 25745] Length = 190 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + IR+ LTQ+E+ + + IS E GK+ NI + LA + L + Sbjct: 1 MSIGTTLQKIRQARDLTQQEVATQMYVTRQTISRWEQGKTMPNIYALKDLAQLYNVSLDQ 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 267 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK+ L+Q+ + + + IS+ E G+S ++D + L+ Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFSVSSDY 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|258654776|ref|YP_003203932.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558001|gb|ACV80943.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + LT + TG ++S +S LETG+ ++ ++ L+H PL L+ Sbjct: 19 VGPRLKGLRTQRGLTLTVVSASTGISKSTLSRLETGQRRPTLELLLALSHAYRVPLDDLV 78 >gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 199 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + +T + TG ++S +S LE G+ +++ ++ +A PL +L+ Sbjct: 15 VGPRLKRLRTQRGVTLTALAEATGISKSTLSRLEGGQRRPSLELLLPIAQAHQVPLDELV 74 >gi|261344638|ref|ZP_05972282.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567554|gb|EFB73089.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 117 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRKE ++ E+ + +Q +S E G + +ID + + L+ P +L+K Sbjct: 31 IRKIRKENGISACELAKKVNISQQQMSRYERGINKFSIDMLFDITVALNIPFERLIK 87 >gi|331650420|ref|ZP_08351492.1| Helix-turn-helix-containing protein [Escherichia coli M605] gi|331040814|gb|EGI12972.1| Helix-turn-helix-containing protein [Escherichia coli M605] Length = 265 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + NN + +R + +TQ+E+ G +Q I +ETGK + + + LD PL Sbjct: 1 MLQNNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLGLAQAICNALDKPL 57 >gi|296332927|ref|ZP_06875387.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673272|ref|YP_003864944.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150207|gb|EFG91096.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411516|gb|ADM36635.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 185 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N +RK LT ++ TG +++ + ++E GKST + + +A+ L Sbjct: 7 IIAMNLVKLRKNRNLTLDQVSELTGVSKAMLGQIEKGKSTPTVTTLWKIANGLQVSFSVF 66 Query: 81 LK 82 LK Sbjct: 67 LK 68 >gi|288920763|ref|ZP_06415063.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347839|gb|EFC82116.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 77 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + L+Q+E+ R G Q+++ ELE GK +I +D + L Sbjct: 11 ESLGRILRQARLLSGLSQRELARRLGTTQNYVWELEAGKRSIMMDRLFAAMRATGMELTA 70 Query: 80 LLK 82 ++ Sbjct: 71 TVR 73 >gi|229172431|ref|ZP_04299990.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228610902|gb|EEK68165.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 404 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L + LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIADKLGCEISFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|210634970|ref|ZP_03298392.1| hypothetical protein COLSTE_02321 [Collinsella stercoris DSM 13279] gi|210158540|gb|EEA89511.1| hypothetical protein COLSTE_02321 [Collinsella stercoris DSM 13279] Length = 71 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ N + R EA + ++ G + +++ E+ETG+ ++ D + ++A +L + Sbjct: 7 RLRLGRNIKARRIEAGHSMRQFAAMVGTSHNYLWEIETGRVSVGFDILCVIADSLGVRVR 66 Query: 79 KLL 81 L+ Sbjct: 67 DLV 69 >gi|153814878|ref|ZP_01967546.1| hypothetical protein RUMTOR_01093 [Ruminococcus torques ATCC 27756] gi|317500391|ref|ZP_07958615.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089602|ref|ZP_08338501.1| hypothetical protein HMPREF1025_02084 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847909|gb|EDK24827.1| hypothetical protein RUMTOR_01093 [Ruminococcus torques ATCC 27756] gi|316898146|gb|EFV20193.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330404970|gb|EGG84508.1| hypothetical protein HMPREF1025_02084 [Lachnospiraceae bacterium 3_1_46FAA] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ NN + R + +++Q+E+ G +++ IS +ETG+ +I+ LD + Sbjct: 5 LVLKNNLKEARAKKQISQRELAEMVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEE 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|78222436|ref|YP_384183.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193691|gb|ABB31458.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 173 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ +LTQK++ R G ++I ++E G+ ++ ++ L+ L P+ Sbjct: 36 GRELKRLRKDRELTQKDLAARVDGGLDYTYIGKIERGEQLPSLKMLMGLSAALGVPVSHF 95 Query: 81 LK 82 + Sbjct: 96 FQ 97 >gi|121603936|ref|YP_981265.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592905|gb|ABM36344.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 223 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK L +++ G + S +S++E G +I++ + L++ L PL L+ Sbjct: 38 LGEQVRHRRKALGLPLQQVARGCGVSVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 97 Query: 82 K 82 + Sbjct: 98 R 98 >gi|260910500|ref|ZP_05917168.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] gi|260635342|gb|EEX53364.1| transcriptional regulator [Prevotella sp. oral taxon 472 str. F0295] Length = 102 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + I + RK++ LTQ ++ + G +S+IS +E G + + + + + L Sbjct: 37 VDAFILGERLKEERKKSGLTQAQLAAKIGTKKSYISRIENGHADVQLSTLFRIFAGLGK 95 >gi|228988770|ref|ZP_04148846.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770950|gb|EEM19440.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 63 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R TQ ++ ++G Q IS +E G +I ++ +A+ L L +LL Sbjct: 6 KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIANALGISLEELL 63 >gi|224543501|ref|ZP_03684040.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] gi|224523628|gb|EEF92733.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] Length = 126 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R K+TQ+ + G ++ +S+ E G S N N+I L+ Sbjct: 54 KSLGESLKENRLRCKMTQEFVAETLGVSRQAVSKWENGTSDPNTTNLIALSRLYKVTPED 113 Query: 80 LLK 82 LLK Sbjct: 114 LLK 116 >gi|167578777|ref|ZP_02371651.1| gp68 [Burkholderia thailandensis TXDOH] Length = 131 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++P Sbjct: 66 VRAWRNHLRMTQDALATAAGISKPYLSQIETRQRVGTTDVLSKIASALSVPVDDLIEP 123 >gi|167622459|ref|YP_001672753.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352481|gb|ABZ75094.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+ RK ++Q ++ +S+ +E G+ I ++ LA L+ + +LL Sbjct: 8 FGTKLRDKRKALGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLECDVRELL 67 >gi|126699926|ref|YP_001088823.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975889|ref|ZP_05272361.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255093277|ref|ZP_05322755.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315019|ref|ZP_05356602.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517694|ref|ZP_05385370.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650804|ref|ZP_05397706.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255656283|ref|ZP_05401692.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260683886|ref|YP_003215171.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687546|ref|YP_003218680.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450276|ref|ZP_06892037.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878691|ref|ZP_06902696.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|306520704|ref|ZP_07407051.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115251363|emb|CAJ69195.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260210049|emb|CBA64125.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213563|emb|CBE05326.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261039|gb|EFH07873.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430498|gb|EFH16340.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 66 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + R+ +LTQ+++ + G + I LE GK ++ I ++ +DTP+ +L Sbjct: 4 FICNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|83716369|ref|YP_438206.1| DNA-binding protein [Burkholderia thailandensis E264] gi|167579250|ref|ZP_02372124.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167614637|ref|ZP_02383272.1| DNA-binding protein [Burkholderia thailandensis Bt4] gi|257141225|ref|ZP_05589487.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83650194|gb|ABC34258.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 202 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 >gi|88855996|ref|ZP_01130658.1| Transcription regulator [marine actinobacterium PHSC20C1] gi|88814863|gb|EAR24723.1| Transcription regulator [marine actinobacterium PHSC20C1] Length = 193 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P E + R+ RK T +++ G + ++S LE +++ ++ ++ Sbjct: 3 PLSPSPS-AEALAIGARIRSARKAQGFTLEQVAVSAGLTKGFLSRLERDETSPSVATLVQ 61 Query: 69 LAHTLDTPLWKLL 81 L L + L Sbjct: 62 LCQVLSLEIGSLF 74 >gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 490 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80 + R R+ LTQ+++ + GF QS++S++E+G+ I +I + +A L + Sbjct: 21 GSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPEDV 79 >gi|256391234|ref|YP_003112798.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357460|gb|ACU70957.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 154 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 2 PRRKRDEP--HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 P + ++P + R + + R +R+E + + E R G + ++SE+E G Sbjct: 31 PSQPPNQPPKQSATPEPLWREVLGDQLRELRREHRESLAETAGRAGISPQYLSEVERGLK 90 Query: 60 TINIDNMIILAHTLDTPL 77 + + + +A L T L Sbjct: 91 EPSSEMIAAVAGALGTTL 108 >gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 97 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R + +TQKE+ + G Q+ +S +ETG + +++ +A+ L Sbjct: 4 GKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALG 55 >gi|255035006|ref|YP_003085627.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947762|gb|ACT92462.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 394 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN + +R+ LTQ++ + +S + E ++ N+ N+ +A + L Sbjct: 3 IVSNNIKYLRRLNGLTQEQFARKIAIKRSLLGAYEEARANPNLTNLKNMAAAFGVSVDNL 62 Query: 81 LK 82 LK Sbjct: 63 LK 64 >gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] Length = 377 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRKE ++Q+ + ++ ++S +E +T +I + + L + K+ Sbjct: 2 NRVKEIRKERGMSQETLARYIEISRKYLSMIECQNATPSISIAMRIGGALGVSVDKIF 59 >gi|215429297|ref|ZP_03427216.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 140 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K + A I + R+ R+ A ++ +++ R+G + ++S++E G + D Sbjct: 6 KLAAKVSTKASDVASDI-GSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD 64 Query: 65 NMIILAHTLDTPLWKL 80 + +A L L Sbjct: 65 VLSQIAKALRVSAEVL 80 >gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 203 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ + +R E KLT ++ G ++S +SE+E K+ I Sbjct: 8 RRTPAAAAPQPSGVTPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTI 67 Query: 64 DNMIILAHTLDTPLWKLL 81 L + L L +L Sbjct: 68 AVAWRLTNALGITLDELF 85 >gi|103487671|ref|YP_617232.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977748|gb|ABF53899.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 222 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P ++ F + + +R +LTQ ++ + G ++ IS E K+ M Sbjct: 112 DVPPPGAGVVSASETFGSRLQRLRVARELTQGQLAAQLGVSEPSISAWELDKARPKAGRM 171 Query: 67 IILAHTLDTPLWKLL 81 L+ L + +LL Sbjct: 172 EALSEALGVEISELL 186 >gi|15963764|ref|NP_384117.1| hypothetical protein SMc02783 [Sinorhizobium meliloti 1021] gi|307302567|ref|ZP_07582324.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316102|ref|ZP_07595546.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15072939|emb|CAC41398.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306897942|gb|EFN28684.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903237|gb|EFN33827.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 125 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R +R+ ++QKE+ G + +++S LE GK + D + +A + Sbjct: 4 FGEAVRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNV 58 >gi|296157068|ref|ZP_06839904.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295892404|gb|EFG72186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 99 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F R +R + Q+ + + G +S + ++E G+ + + +A L Sbjct: 26 FGTAVRELRTADGIAQEALAHMAGIERSHMGKIERGQHMPTLALIFKIASALGKSP 81 >gi|294814036|ref|ZP_06772679.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294326635|gb|EFG08278.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 30 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 88 >gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785] gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 161 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE LTQ+E+ + + IS E ++ + + +I++A T L +L+ Sbjct: 3 FNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAKTFGVSLDELI 62 >gi|254785721|ref|YP_003073150.1| DNA-binding protein [Teredinibacter turnerae T7901] gi|237684567|gb|ACR11831.1| DNA-binding protein [Teredinibacter turnerae T7901] Length = 200 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 8 EPHLSDAILRERMIF------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 E A+L E+ + +RK+ L+Q+E+ R S +S +E GK + Sbjct: 2 EEQSPQAVLSEQTAVSANNRLGERLQAVRKQHGLSQRELARRAEVTNSTLSMIEQGKVSP 61 Query: 62 NIDNMIILAHTLDTPLWKLL 81 ++ ++ + + L + Sbjct: 62 SVASLEKVLSAIPMTLQEFF 81 >gi|223982789|ref|ZP_03633015.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] gi|223965236|gb|EEF69522.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM 12042] Length = 87 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RK KLTQ+++ G + +S E ++ + + +A TLD L +L Sbjct: 8 LLGRRIRILRKYRKLTQEQLAEVVGLSIQHLSNAENARTKLGFPKIKSIADTLDVSLDEL 67 >gi|149204098|ref|ZP_01881066.1| DNA-binding protein [Roseovarius sp. TM1035] gi|149142540|gb|EDM30585.1| DNA-binding protein [Roseovarius sp. TM1035] Length = 94 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++A LTQ+E+ R + +IS LETG+ ++ + L+ L + L+ Sbjct: 16 FAVTLYEERQKAGLTQEELAERADVSARFISFLETGRRQPSLSTLHALSKGLRISMQDLV 75 >gi|73748675|ref|YP_307914.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669434|ref|YP_001214252.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432701|ref|YP_003462574.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660391|emb|CAI82998.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270382|gb|ABQ17374.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946421|gb|ADC74118.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 214 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 M R RK T + + R+G + +I +LE G+ +I + L++ Sbjct: 2 MSIGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQSITLATANKLSNAFGIEPA 61 Query: 79 KLL 81 KL+ Sbjct: 62 KLI 64 >gi|327438377|dbj|BAK14742.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q E+ + G + I +E GK + I + TL+ L +L Sbjct: 5 RLKMARIEHDLSQDELAKKVGVTRQTIGLIELGKYNPTLSVCIAICRTLNRTLDELF 61 >gi|294498960|ref|YP_003562660.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|295704284|ref|YP_003597359.1| transcription regulator SinR [Bacillus megaterium DSM 319] gi|294348897|gb|ADE69226.1| probable transcription regulator sinR [Bacillus megaterium QM B1551] gi|294801943|gb|ADF39009.1| probable transcription regulator sinR [Bacillus megaterium DSM 319] Length = 111 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 M R++R + ++ E+ NR G A+S+IS +E G + +I + ++ +L+ + Sbjct: 1 MTIGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQLNPSIQFLNKISTSLNVSID 60 Query: 79 KLL 81 +L+ Sbjct: 61 RLI 63 >gi|300767755|ref|ZP_07077665.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494740|gb|EFK29898.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 250 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R + LTQ ++ ++ +S+ E GK+ +IDN++ L+ + L + Sbjct: 1 MLLAALLKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 354 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N +++R LTQ+ + G ++ IS+ E+ ++ +D ++ + L + Sbjct: 25 MSFRENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRAYPEMDKLLTICDLFGCTLDE 84 Query: 80 LLK 82 L+ Sbjct: 85 LVT 87 >gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] Length = 307 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R +A L+Q+ + + G ++ IS+ E + +D +I L+ + L Sbjct: 1 MTLGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHD 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLQ 63 >gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 192 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 31/52 (59%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N +++RKE LT ++I +R G + IS++E G++ ++ +I + L+ Sbjct: 11 NKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTIPSLLVLIEIIQALEV 62 >gi|28377509|ref|NP_784401.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308181218|ref|YP_003925346.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270341|emb|CAD63242.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1] gi|308046709|gb|ADN99252.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 66 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R +R++ L+Q + +++G Q+ IS +E+G + + + LA L + Sbjct: 1 MTYTLRIRELRQKLGLSQSALADKSGVPQTTISAIESG-TNLTYETAKKLARALGVSTDE 59 Query: 80 L 80 L Sbjct: 60 L 60 >gi|28377772|ref|NP_784664.1| hypothetical protein lp_0949 [Lactobacillus plantarum WCFS1] gi|254555954|ref|YP_003062371.1| hypothetical protein JDM1_0787 [Lactobacillus plantarum JDM1] gi|308179946|ref|YP_003924074.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270605|emb|CAD63511.1| unknown [Lactobacillus plantarum WCFS1] gi|254044881|gb|ACT61674.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|308045437|gb|ADN97980.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 250 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R + LTQ ++ ++ +S+ E GK+ +IDN++ L+ + L + Sbjct: 1 MLLAALLKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|255262941|ref|ZP_05342283.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105276|gb|EET47950.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 209 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ +T E+ TG + +S++E G ++ ++ + LA L P+ Sbjct: 26 GREVKGFRRRQNMTVAELSAMTGLSIGMLSKIENGNTSPSLTTLQTLADALTVPI 80 >gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 118 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +RKE KL Q+E+ G ++ IS+ E G + +N+ LA P+ L Sbjct: 3 IIGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVDYL 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|170783094|ref|YP_001711428.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157664|emb|CAQ02865.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 153 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EA L+Q+E+ TG Q I+ E+G+ + + ++ L L P + Sbjct: 6 VGEELRRLRREAALSQRELAAVTGVPQPNIAAYESGRRQPSPETLVRLGAALRAPSLDRV 65 Query: 82 K 82 + Sbjct: 66 R 66 >gi|168207127|ref|ZP_02633132.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] gi|170661532|gb|EDT14215.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] Length = 134 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F NN + +RK L+Q E+ G ++S +S E+G+S ++ +I ++ + L L+ Sbjct: 10 FPNNLKTLRKLNLLSQSELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYLI 69 >gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] Length = 152 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + RK L+Q+++ + G ++ IS+ ETG++ +I LA L +L+ Sbjct: 3 LGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQCKRLAVLYQMSLDELI 62 >gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 182 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R L+Q+E+ R G S IS +E+ S ++ + + + L + Sbjct: 6 GNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSNPSVGALKRILDGIPIGLAEFF 64 >gi|85716772|ref|ZP_01047739.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A] gi|85696379|gb|EAQ34270.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A] Length = 199 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R++ L+Q+++ R G QS IS++E+G + + + +++ LA LD L Sbjct: 15 QTLRAAREQTGLSQRDLSARIGVPQSHISKIESGGTDLRLSSLVELARALDYELV 69 >gi|115522503|ref|YP_779414.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516450|gb|ABJ04434.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisA53] Length = 305 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R +++K + +G ++ +I++LE+GK ++I + ++ L T Sbjct: 13 EQLGQRVRTMRGLRGMSRKVLAKTSGISERYIAQLESGKGNVSIVLLRRVSQALGTQPED 72 Query: 80 LL 81 L+ Sbjct: 73 LI 74 >gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 194 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++F + +RK A ++QK + + +Q I+ E G+ + +I A D + Sbjct: 79 LMFPERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQRNPKREKLIETADFFDVSVDY 138 Query: 80 LL 81 LL Sbjct: 139 LL 140 >gi|325918054|ref|ZP_08180215.1| transcriptional regulator, XRE family [Xanthomonas vesicatoria ATCC 35937] gi|325535751|gb|EGD07586.1| transcriptional regulator, XRE family [Xanthomonas vesicatoria ATCC 35937] Length = 116 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 F + R L+QKE+ R G A I++ E GK ++ LA L P Sbjct: 19 FARRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPKLETAERLAQALGIP 77 >gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 168 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R+ LTQ E G +++ +S E G ST++ + + + + + Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 81 L 81 + Sbjct: 71 V 71 >gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 181 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + KLTQ E+ G ++ ++ +E S +I ++ +A L + L+ Sbjct: 9 IKRLRAQHKLTQIELAEMAGIPRATLANMEGANSNPSISVVMKVAQALGVTVDDLIT 65 >gi|329298836|ref|ZP_08256172.1| DNA-binding transcriptional repressor PuuR [Plautia stali symbiont] Length = 186 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+E L+Q+ + +G S IS +E K + + + L L + Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|291549648|emb|CBL25910.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 118 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LTQ+E+ + + + I+ +E G+ + + LA L L L+ Sbjct: 9 LGQKMRESRKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|288551655|ref|YP_003422743.1| hypothetical protein pXY3_p6 [Lactobacillus plantarum] gi|284930108|gb|ADC30142.1| conserved domain protein [Lactobacillus plantarum] Length = 85 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R KLTQ E+ + TG + I LE + +++ +A L+TP+ L Sbjct: 18 FTCNVKQYRVAKKLTQAELSDFTGVRRETIGRLENAQYVPSLELGFKIAWVLNTPITDLF 77 Query: 82 K 82 K Sbjct: 78 K 78 >gi|261414746|ref|YP_003248429.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371202|gb|ACX73947.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328044|gb|ADL27245.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 121 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ + TQ+ + +G ++ +IS++E GK ++D + LA L T + L+ Sbjct: 19 IRQQRRHTQQSLSLESGISRQYISQMECGKRIPSLDTLSQLAIALKTSMGSLM 71 >gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 189 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E ++ + G ++ +S LE G ++ + + L PL Sbjct: 22 VGARVRALREERGMSLSTLARLAGVGKATLSGLENGTRNPTLETLYAVTAQLGVPL 77 >gi|228911093|ref|ZP_04074900.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] gi|228848597|gb|EEM93444.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] Length = 68 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 4 LYLNNVKKYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63 Query: 81 L 81 Sbjct: 64 F 64 >gi|218247603|ref|YP_002372974.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168081|gb|ACK66818.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 173 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E HL + R+ + +RK+ LTQK++ + G QSW+S+LE+ + ++++ Sbjct: 24 EMHLIEKQEVFRISLTQAMKQLRKKVGLTQKQLAEKLGVTQSWVSKLESANNDHTFESVL 83 Query: 68 ILAHTL 73 + L Sbjct: 84 AYLNGL 89 >gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6] gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae] gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae] gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6] gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|83717317|ref|YP_440206.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83651142|gb|ABC35206.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R RKE ++Q+ + + +S + ++E G+ + I N++ +A L + Sbjct: 1 MSLGAAIRARRKELVMSQEALADFAEIDRSHMGKIERGERNVTIMNIVRIARALQLLPSE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium glutamicum ATCC 13032] Length = 474 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 59 >gi|77412886|ref|ZP_00789090.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161026|gb|EAO72133.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 117 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +RK+ L+QKE+ + G IS +E K N+ +A + +L Sbjct: 5 FALNLIRLRKQKGLSQKELAKKIGMLPQTISNIENQKGYPTFSNLDKIARYFNVSATELF 64 >gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia pseudomallei 1106a] gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 202 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 >gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK +LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|291445471|ref|ZP_06584861.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291348418|gb|EFE75322.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 285 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ Sbjct: 2 PSNVNPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRD 60 Query: 69 LAHTLDTPLWKLL 81 L + +++ Sbjct: 61 LCGVYEVEDVRIV 73 >gi|241765974|ref|ZP_04763899.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241364066|gb|EER59302.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 124 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IRK++ +Q E+ ++++S LE G S + + LA L + +L+ Sbjct: 23 FGEYLKTIRKDSDKSQAELAFDASMDRTYVSLLERGLSAPTLLVLDSLAKALGMTMTELM 82 >gi|254784460|ref|YP_003071888.1| DNA-binding protein [Teredinibacter turnerae T7901] gi|237686654|gb|ACR13918.1| DNA-binding protein [Teredinibacter turnerae T7901] Length = 185 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E TQ+++ + + +E+G + + + LA+ L + +L+ Sbjct: 10 LAGNVRQLRSERGFTQQQMATLAQIPRPTWASIESGAANPTLSVLSKLANALQVSIEELV 69 >gi|167832382|ref|YP_001686773.1| prophage repressor [Halomonas phage phiHAP-1] gi|166836356|gb|ABY90405.1| prophage repressor [Halomonas phage phiHAP-1] Length = 234 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTP 76 RM + R++R++ LT +E+ + G ++S +ET K ++ + +A L T Sbjct: 12 RMDIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLNPSVYTVADIARALGTT 71 Query: 77 LWKLLK 82 + +LLK Sbjct: 72 VDELLK 77 >gi|126651869|ref|ZP_01724070.1| transcriptional regulator [Bacillus sp. B14905] gi|126591337|gb|EAZ85445.1| transcriptional regulator [Bacillus sp. B14905] Length = 188 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F IRK+ ++ +E+ + + S +S++E G I +A L+T L LL Sbjct: 3 FGKQVNFIRKKRGMSLQELSALSKVSTSMLSQIERGGKNPTITVACQIAEALNTTLSALL 62 >gi|159038022|ref|YP_001537275.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916857|gb|ABV98284.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + +T E+ TG ++S +S LE G+ +++ ++ +A PL KL+ Sbjct: 13 GPRLKQARAQRGVTLAELAETTGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLV 71 >gi|94265975|ref|ZP_01289699.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453478|gb|EAT03891.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 117 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 10 HLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +D + R F R R+ LTQKE+ G Q+ IS +E GK + Sbjct: 37 ESADTSIPWREAFPEYADEEIPAVCLRAARRREGLTQKELAALAGIPQAHISLMERGKMS 96 Query: 61 INIDNMIILAHTLDT 75 I + LA L+T Sbjct: 97 IGVTRAKRLAKALNT 111 >gi|16764259|ref|NP_459874.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|169257171|ref|YP_001700549.1| putative transcriptional regulator (repressor) [Salmonella phage Fels-1] gi|16419406|gb|AAL19833.1| predicted Fels-1 prophage transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 231 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK K+T ++ T + IS LE G + ++ +A L P+ +L Sbjct: 5 VGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGYSAQSIQKIAEALQVPVSELF 64 >gi|194336093|ref|YP_002017887.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194308570|gb|ACF43270.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 130 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 23 VNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+ LTQ+++ G + ++S++ET K T + ++ +A L+ L ++ Sbjct: 66 GENPIKVWREYRGLTQQQLAETVGISTPYLSQIETSKRTGTTEVLLAVAKALNVTLDDIV 125 >gi|333023200|ref|ZP_08451264.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332743052|gb|EGJ73493.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 204 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ A LT + + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75 >gi|291485885|dbj|BAI86960.1| putative transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R RKE+ L+Q + G S++S LE GK + + ++ ++ TL+ Sbjct: 7 LGHMIRKKRKESGLSQTVFAEKIGCTGSYVSRLENGKVSPTLKSLEQISQTLNI 60 >gi|260773859|ref|ZP_05882774.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260610820|gb|EEX36024.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 207 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + +R +T +E RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGPRIKQVRANLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L P Sbjct: 84 PQLFDP 89 >gi|260664469|ref|ZP_05865321.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561534|gb|EEX27506.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 76 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78 M R+ RK KLTQ+++ +G + ++IS +E G I+I + +A +L+ Sbjct: 3 MCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTP 62 Query: 79 KLL 81 L+ Sbjct: 63 SLI 65 >gi|257057003|ref|YP_003134835.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586875|gb|ACU98008.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 411 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTP 76 E + R+ L+Q + G ++ W+S++E G+ +N ID ++ LA L Sbjct: 6 EGLSIGERVAFYRRRRGLSQAVLAGLMGKSEDWVSKIERGERQVNRIDVLVELARQLRVT 65 Query: 77 LWKLL 81 L LL Sbjct: 66 LNDLL 70 >gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] Length = 509 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. ORS278] Length = 481 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q ++ G + S+++ +E + ++ ++ LA D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|158320320|ref|YP_001512827.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140519|gb|ABW18831.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 130 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R +RKE + + IR TG ++S ISE+E KS+ + + +A+ L+ + Sbjct: 1 MTLGEKIRALRKEKRYSIMNIRELTGLSKSTISEIENDKSSPTAETLQKIANALEVTVDT 60 Query: 80 LLK 82 K Sbjct: 61 FFK 63 >gi|56961997|ref|YP_173719.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908231|dbj|BAD62758.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 63 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R++ LTQ E+ ++ ++ I +E ++ I LA L+ L +L Sbjct: 3 NRVKQARRDLGLTQGELADKVNVSRQTIGLIEKNHYNPSLKLCIALAKALNKTLDQLF 60 >gi|290770159|gb|ADD61918.1| putative protein [uncultured organism] Length = 126 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ+E+ + + + I+ +E GK + + LA L L L+ Sbjct: 11 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSHLILRALAKVLHISLDTLI 70 Query: 82 KP 83 P Sbjct: 71 NP 72 >gi|302522960|ref|ZP_07275302.1| regulatory protein [Streptomyces sp. SPB78] gi|302431855|gb|EFL03671.1| regulatory protein [Streptomyces sp. SPB78] Length = 204 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ A LT + + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75 >gi|256377995|ref|YP_003101655.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922298|gb|ACU37809.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +RK A L+ + +G ++ ++++E G++ ++ + +A L T L Sbjct: 12 LLGNRIRALRKAAGLSVVRLAELSGVSRRMLTQIELGQANPSLSTVDRVASALGTTFSAL 71 >gi|227535271|ref|ZP_03965320.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187155|gb|EEI67222.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 192 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 32/58 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK ++TQK++ G + IS++E G T++++ ++ + L+ +L Sbjct: 40 GLHIKQLRKAQRITQKDLAAEIGTIEQTISKIERGVFTLSVETIMQFCNALNVTPNEL 97 >gi|254488744|ref|ZP_05101949.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045613|gb|EEB86251.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 188 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 DAIL + + R L+ + +G ++S +S++E G+S+ I + L Sbjct: 4 DPDAILNQ---LPRRLKAARAAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLT 60 Query: 71 HTLDTPLWKLL 81 L LL Sbjct: 61 RALQVDFAGLL 71 >gi|170760826|ref|YP_001787299.1| transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407815|gb|ACA56226.1| transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 200 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + K TQ ++ G ++S+I ++E G++ N + +A + PL Sbjct: 15 ARELKAEKIGKKFTQNDLAESLGKSRSYIGDIENGRTYPNYRLLAEIAKVCEVPL 69 >gi|167578709|ref|ZP_02371583.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis TXDOH] gi|167616842|ref|ZP_02385473.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis Bt4] gi|257140768|ref|ZP_05589030.1| Cro/CI family transcriptional regulator putative [Burkholderia thailandensis E264] Length = 183 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|149927273|ref|ZP_01915529.1| hypothetical protein LMED105_09865 [Limnobacter sp. MED105] gi|149823987|gb|EDM83210.1| hypothetical protein LMED105_09865 [Limnobacter sp. MED105] Length = 94 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + F + R +L+Q+++ +G ++ I +E GK + +++++ + L+ Sbjct: 5 LTFGLAVKKYRLARELSQEKLAELSGLHRNLIGLVERGKISASVESIFSICDALNIQPSA 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica CNB-440] gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica CNB-440] Length = 191 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ AK++ +++ + G + ++S++E G + + + LA L Sbjct: 14 IRDLRRSAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64 >gi|145224569|ref|YP_001135247.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444900|ref|YP_004077779.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] gi|145217055|gb|ABP46459.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315263203|gb|ADT99944.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1] Length = 104 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R E T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REVIGDVLRRARIEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICTALDVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 RVL 68 >gi|326790509|ref|YP_004308330.1| hypothetical protein Clole_1406 [Clostridium lentocellum DSM 5427] gi|326541273|gb|ADZ83132.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 61 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 N + R + +TQ E+ + G +S++S +E GK + + M+ LA L+T + L Sbjct: 2 NVKIARLKKHMTQNELCEKVGICRSFLSRIENGKDGNVTKEVMLKLASILETDVVALF 59 >gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 115 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N + +RK LTQ+++ RTG ++ I ET + +++++ +LA +T Sbjct: 2 KTTVGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASYFNTSTD 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] Length = 368 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + N+RK+ +Q+E+ R G ++ +S+ E +S ++D ++ L+ Sbjct: 1 MILADKIINLRKKNGWSQEELAERLGVSRQSVSKYEGAQSVPDLDKILKLSEIFGVTTDY 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens DSM 30120] Length = 189 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R+++ ++ E+ + G A+S +S+LE G +I+ + L LD P + Sbjct: 12 ELISKSLACERQKSGMSLSELARKAGIAKSTLSQLEAGSGNPSIETLWALCVALDIPFSR 71 Query: 80 LLK 82 L++ Sbjct: 72 LIE 74 >gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314] gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314] Length = 474 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 59 >gi|330899943|gb|EGH31362.1| DNA-binding protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 90 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ++ +G ++++SE+E G + ++ + LA + +LL Sbjct: 8 GAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLELL 64 >gi|258509371|ref|YP_003172122.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149298|emb|CAR88271.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259650650|dbj|BAI42812.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 215 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + R++ LTQ ++ + + IS E G+S +I ++ ++ PL + Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQIPLDQ 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|258511056|ref|YP_003184490.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477782|gb|ACV58101.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 206 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R++R KL+ ++ +TG + + IS LE D + LA L P +L Sbjct: 6 FGEYLRSLRLARKLSINQLAEKTGISAAHISRLERNVREVPRPDTLRKLALGLGVPFDEL 65 Query: 81 LK 82 L+ Sbjct: 66 LR 67 Score = 43.8 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINID 64 R + + + + +R+ L+ ++ + G ++++++ LE+ + + Sbjct: 67 RAAGYSEEQYEYNTKVLSRRLQRLRESKGLSLSDVAHIAGISEAYLARLESAEGRLPGVT 126 Query: 65 NMIILAHTLDTPLWKLL 81 + LA D L+ Sbjct: 127 TLHRLAQVFDVTPAYLV 143 >gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 143 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R++ LT+ ++ +G +QS +SE+E G I + + L+ L Sbjct: 4 GKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLADFF 62 >gi|148266050|ref|YP_001232756.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399550|gb|ABQ28183.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 356 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW--ISELETGKSTINIDNMIILAHTLDTP 76 + IF R+ ++ + + G S+ + E G+ + D +I +A LD P Sbjct: 7 KEIFGRRLSQARRMRGMSLRAVAEAIGGKVSYNALHRYECGEMMPSDDVLIPVADVLDKP 66 Query: 77 LWKLLKP 83 L +P Sbjct: 67 LDFFFRP 73 >gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R] gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R] Length = 474 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 59 >gi|76817873|ref|YP_337176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|217424647|ref|ZP_03456145.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] gi|254185399|ref|ZP_04891987.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|254187284|ref|ZP_04893798.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|76582346|gb|ABA51820.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|157934966|gb|EDO90636.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|184209634|gb|EDU06677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|217392571|gb|EEC32595.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] Length = 189 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 11 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|313904105|ref|ZP_07837485.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313471254|gb|EFR66576.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 123 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +AI E M + + R LTQKE+ RTG Q+ IS+LE G +++ + LA Sbjct: 50 EAIQPE-MDVIRAIVDARTSQNLTQKELAERTGINQADISKLENGTRNPSVNLLKRLAEG 108 Query: 73 LDTPLWKLLKP 83 + L P Sbjct: 109 MGMTLKIEFVP 119 >gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 370 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + N N+RK+ +TQ+ + G ++ +S+ ETG+S ++ + LA D + Sbjct: 2 EELSLSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|293570317|ref|ZP_06681377.1| DNA-binding protein [Enterococcus faecium E980] gi|291609596|gb|EFF38858.1| DNA-binding protein [Enterococcus faecium E980] Length = 370 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + N N+RK+ +TQ+ + G ++ +S+ ETG+S ++ + LA D + Sbjct: 2 EELSLSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|291532703|emb|CBL05816.1| Helix-turn-helix [Megamonas hypermegale ART12/1] Length = 80 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTL 73 E RK K TQ+E+ R + S++S +E G K + I ++ +A L Sbjct: 11 ESEYRQIGAKIMYFRKMKKYTQEELAFRASISASYLSRIERGVYKKGLPISTLMKIAKAL 70 Query: 74 DTPLWKLLK 82 + L + + Sbjct: 71 EVELSAIFE 79 >gi|228949497|ref|ZP_04111751.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810220|gb|EEM56587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 184 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|257066745|ref|YP_003153001.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798625|gb|ACV29280.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 491 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE +TQK + + TG ++ IS LE+ T +ID + + LD + + + Sbjct: 17 RKEKGITQKSLADTTGINRAMISRLESCDYTPSIDQLQAIGEVLDFEVVDMFE 69 >gi|227325994|ref|ZP_03830018.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 201 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ E+ R G A+S +S+LE+G +++ + LA LD + +L+ Sbjct: 31 IRRERERLNLSVTELAKRAGLAKSTLSQLESGVGNPSLETLWALAMALDVQVSQLI 86 >gi|188585658|ref|YP_001917203.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350345|gb|ACB84615.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 89 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +RKE L+QKE+ + G QS IS LE +I+ + +A D L Sbjct: 31 RQVIKLRKEKGLSQKELAEKIGTKQSAISRLENESYNPSIELLYKIAKACDRDL 84 >gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae TIGR4] gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 158 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|332157993|ref|YP_004423272.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2] gi|331033456|gb|AEC51268.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2] Length = 192 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + IRK +TQ+E+ + G Q++I++LE GK + + L Sbjct: 11 RDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60 >gi|308179920|ref|YP_003924048.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045411|gb|ADN97954.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 102 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +++RK KLTQ E+ + ++ I+ E GK+ +I+ +I + LDT LL Sbjct: 4 FGDKLKSLRKAKKLTQVELAQQLDISKWAITSYEQGKTYPSIEVLIKICSVLDTSSDYLL 63 >gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13] gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40] gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 203 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++R LTQ+++ + G S IS E+G++ ++ LA L +LL Sbjct: 39 FATKLISLRSAQNLTQQQLADAVGITPSQISRYESGQAKPRKIILLRLADALGVSSTELL 98 Query: 82 K 82 + Sbjct: 99 Q 99 >gi|295104565|emb|CBL02109.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 106 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK LTQ++ + + + +E G+ +ID ++ +A +L T L L+ Sbjct: 9 GKRIQKARKAHGLTQEQFAIKLNISDRHLGRIERGECAASIDLLVEVAVSLKTTLDFLI 67 >gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6] gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF] gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636] gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6] gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF] gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636] Length = 250 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +R E +T +E+ + G ++ +S E G+ + + + +LA+ + Sbjct: 4 KLFPQRLKELRAEKGITLEELAKKIGTTKTTLSRYENGERSPKLQLVGLLANYFQVEMSW 63 Query: 80 L 80 L Sbjct: 64 L 64 >gi|229489782|ref|ZP_04383639.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229323292|gb|EEN89056.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 211 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ +LT ++ G + ++S+LE ++ +I + L+ P+ L + Sbjct: 16 GARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGSLFE 75 >gi|187935844|ref|YP_001893672.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B] gi|187723996|gb|ACD14202.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +IF N + +R K+ Q+++ + G A+S IS ET KS + +I +A+ + + + Sbjct: 6 LIFSKNLKKLRTFNKMKQEDLAVKIGVARSNISYYETQKSEPTLTPLINIANIFNVTINE 65 Query: 80 LLK 82 L+ Sbjct: 66 LVT 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + IF N + +R + Q E+ ++S IS E+G+S + ++ + Sbjct: 88 KVFSSSEIFSKNLKELRIGKNMYQIELAKEVKTSKSNISFYESGRSEPTLGVLMRICDFF 147 Query: 74 DTPLWKLL 81 + L +L+ Sbjct: 148 NIKLSELV 155 >gi|90421045|ref|ZP_01228948.1| conserved hypothetical protein, possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334680|gb|EAS48457.1| conserved hypothetical protein, possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 313 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 A+ R R + R R++ + +Q + G +Q +S LE+G+S + ++ LA Sbjct: 35 DTAMTRARQSAGDLLRQWRQQRRFSQLALALDAGISQRHLSFLESGRSAPSRAMLLRLAD 94 Query: 72 TLDTPL 77 LD PL Sbjct: 95 HLDMPL 100 >gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 182 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ +R++A L+Q+E+ R G +IS++E + ++ ++ L + T + + Sbjct: 6 GTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEFF 64 >gi|255974976|ref|ZP_05425562.1| predicted protein [Enterococcus faecalis T2] gi|255967848|gb|EET98470.1| predicted protein [Enterococcus faecalis T2] Length = 239 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ + R E LTQ E+ + + IS E KS NID +I L+ + L +LLK Sbjct: 4 GNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLK 63 >gi|308235773|ref|ZP_07666510.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114939|ref|YP_003986160.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] gi|310946433|gb|ADP39137.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] Length = 67 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE +TQ+E+ + ++ + LE G+ +I +A + + ++ Sbjct: 3 NRLEQIRKEKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60 >gi|225389735|ref|ZP_03759459.1| hypothetical protein CLOSTASPAR_03483 [Clostridium asparagiforme DSM 15981] gi|225044204|gb|EEG54450.1| hypothetical protein CLOSTASPAR_03483 [Clostridium asparagiforme DSM 15981] Length = 82 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGK-STINIDNMIILAHTL 73 ER I RK+A LTQ+ + R G + +++ ++E TG ++++ + +A L Sbjct: 12 PERYITLGLKIAYYRKKAGLTQEVLAERIGKSVNFVGQVEGTGTIRGVSLETLFKIAQVL 71 Query: 74 DTPLWKLLK 82 KLL+ Sbjct: 72 KIQPSKLLE 80 >gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK+ L+Q+++ + G ++ I++ E G ++ ++ ++ L+ LLK Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLK 70 >gi|254383791|ref|ZP_04999139.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194342684|gb|EDX23650.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 294 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R++ +T +++ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCDV 64 Query: 73 LDTPLWKLL 81 + +L+ Sbjct: 65 YEVEDRRLV 73 >gi|169829608|ref|YP_001699766.1| SinR protein [Lysinibacillus sphaericus C3-41] gi|168994096|gb|ACA41636.1| SinR protein [Lysinibacillus sphaericus C3-41] Length = 300 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 F N RKE KLT +E R G + ++S+LE K + + + +A+ LD Sbjct: 34 ETFGEVISNARKEKKLTLREAAKRIGISHPYLSQLEKNKNKNPSFEILYKIAYELDVS 91 >gi|167032884|ref|YP_001668115.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859372|gb|ABY97779.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 35/67 (52%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L +R + R +RK ++T K++ +G S +S++E + +++ + + A L+ Sbjct: 7 LLDRAVVGQRLRQVRKARQMTLKQLSEASGVPVSTLSKMELAQVSVSYEKLAAAARALNV 66 Query: 76 PLWKLLK 82 + +L + Sbjct: 67 DIAQLFR 73 >gi|83717911|ref|YP_440137.1| Cro/CI family transcriptional regulator [Burkholderia thailandensis E264] gi|83651736|gb|ABC35800.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis E264] Length = 189 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 11 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121636390|ref|YP_976613.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660241|ref|YP_001281764.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148821673|ref|YP_001286427.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970705|ref|ZP_02552982.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402227|ref|ZP_03414408.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215409992|ref|ZP_03418800.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425701|ref|ZP_03423620.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215444577|ref|ZP_03431329.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752108|ref|ZP_03530904.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219556293|ref|ZP_03535369.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224988862|ref|YP_002643549.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797402|ref|YP_003030403.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254230822|ref|ZP_04924149.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C] gi|254363439|ref|ZP_04979485.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254549422|ref|ZP_05139869.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185342|ref|ZP_05762816.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260199473|ref|ZP_05766964.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260203626|ref|ZP_05771117.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289441856|ref|ZP_06431600.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446017|ref|ZP_06435761.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289552725|ref|ZP_06441935.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289568393|ref|ZP_06448620.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573061|ref|ZP_06453288.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744172|ref|ZP_06503550.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289748964|ref|ZP_06508342.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289756549|ref|ZP_06515927.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289760592|ref|ZP_06519970.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294995981|ref|ZP_06801672.1| transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|297632959|ref|ZP_06950739.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN 4207] gi|297729934|ref|ZP_06959052.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN R506] gi|298523952|ref|ZP_07011361.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis 94_M4241A] gi|306774572|ref|ZP_07412909.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779320|ref|ZP_07417657.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306783110|ref|ZP_07421432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787478|ref|ZP_07425800.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792029|ref|ZP_07430331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306796215|ref|ZP_07434517.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306802073|ref|ZP_07438741.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306806284|ref|ZP_07442952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306966480|ref|ZP_07479141.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306970676|ref|ZP_07483337.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307078400|ref|ZP_07487570.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082959|ref|ZP_07492072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657263|ref|ZP_07814143.1| transcriptional regulatory protein [Mycobacterium tuberculosis KZN V2475] gi|81669532|sp|O53759|Y474_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0474/MT0491 gi|2909550|emb|CAA17429.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879998|gb|AAK44714.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis CDC1551] gi|31617240|emb|CAD93347.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121492037|emb|CAL70500.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599881|gb|EAY58891.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C] gi|134148953|gb|EBA40998.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148504393|gb|ABQ72202.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148720200|gb|ABR04825.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224771975|dbj|BAH24781.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253318905|gb|ACT23508.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289414775|gb|EFD12015.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289418975|gb|EFD16176.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289437357|gb|EFD19850.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289537492|gb|EFD42070.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542146|gb|EFD45795.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289684700|gb|EFD52188.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289689551|gb|EFD56980.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708098|gb|EFD72114.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289712113|gb|EFD76125.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493746|gb|EFI29040.1| transcriptional regulator, PbsX family [Mycobacterium tuberculosis 94_M4241A] gi|308216919|gb|EFO76318.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327764|gb|EFP16615.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332127|gb|EFP20978.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308335853|gb|EFP24704.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339516|gb|EFP28367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343384|gb|EFP32235.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347293|gb|EFP36144.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351223|gb|EFP40074.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308355876|gb|EFP44727.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308359797|gb|EFP48648.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363736|gb|EFP52587.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367393|gb|EFP56244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323721149|gb|EGB30211.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326902301|gb|EGE49234.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328457188|gb|AEB02611.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 140 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K + A I + R+ R+ A ++ +++ R+G + ++S++E G + D Sbjct: 6 KLAAKVSTKASDVASDI-GSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD 64 Query: 65 NMIILAHTLDTPLWKL 80 + +A L L Sbjct: 65 VLSQIAKALRVSAEVL 80 >gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ A L+Q+ + R + IS++E+ + + +I ++ + L + + Sbjct: 11 VGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRISPSIASLRRILGGLGLSMAEFF 70 Query: 82 KP 83 +P Sbjct: 71 EP 72 >gi|324993465|gb|EGC25385.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|327458828|gb|EGF05176.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 65 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ + G + I +E GK ++ + + L+ L +L Sbjct: 6 RLKMARAERDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|296159361|ref|ZP_06842186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890345|gb|EFG70138.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 191 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E+ G ++ ++S++E G +T +I +++ +A L Sbjct: 16 GSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIARALGV 68 >gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 188 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 ++KR L I N R +RK+ TQK+ + + +S++E G + + Sbjct: 11 KKKRQPITGVQLKLTTGQIIGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVFSPS 70 Query: 63 IDNMIILAHTLDTPLWKLL 81 D+++ + L+ Sbjct: 71 TDSLMNICTIFGVTPNDLM 89 >gi|257085321|ref|ZP_05579682.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|293382363|ref|ZP_06628302.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|293389375|ref|ZP_06633833.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|312907395|ref|ZP_07766386.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 512] gi|312910013|ref|ZP_07768860.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 516] gi|256993351|gb|EEU80653.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|291080308|gb|EFE17672.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|291081262|gb|EFE18225.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|310626423|gb|EFQ09706.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 512] gi|311289286|gb|EFQ67842.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 516] gi|315575524|gb|EFU87715.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309B] gi|315577563|gb|EFU89754.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] gi|315580035|gb|EFU92226.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309A] Length = 102 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTP 76 F + +R+ L ++ ++G S IS LE G + D + LA L Sbjct: 3 FGEKLKYLRESKGLGVNQLALKSGVNASNISRLEKGIRKDPTFDTVKKLAKALGVS 58 >gi|253990606|ref|YP_003041962.1| regulatory protein DicA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782056|emb|CAQ85220.1| similar to dica, regulator of dicb encoded by prophage cp-933 (putative regulatory protein) [Photorhabdus asymbiotica] Length = 135 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +R + K++Q + G+ +QS I E+G ++ D+ +IL+ L Sbjct: 5 ESIGARIKRLRNQQKMSQAALAELCGWASQSRIGNYESGIRNVSTDDAVILSKALGVSPA 64 Query: 79 KLL 81 +L+ Sbjct: 65 ELM 67 >gi|297198135|ref|ZP_06915532.1| transcriptional regulatory protein [Streptomyces sviceus ATCC 29083] gi|197714170|gb|EDY58204.1| transcriptional regulatory protein [Streptomyces sviceus ATCC 29083] Length = 201 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + R G ++ + ++E ++ ++ ++ + L + Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITT 79 Query: 80 LL 81 LL Sbjct: 80 LL 81 >gi|219847677|ref|YP_002462110.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541936|gb|ACL23674.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 181 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +R+E LT +E+ +G S++S LE K I++ N+ LA + Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVKMTH 60 Query: 80 LLK 82 + Sbjct: 61 FFE 63 >gi|91782830|ref|YP_558036.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91686784|gb|ABE29984.1| Transcriptional Regulator, XRE(MerR) family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 191 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E+ G ++ ++S++E G +T +I +++ +A L Sbjct: 16 GSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIARALGV 68 >gi|71734040|ref|YP_276442.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554593|gb|AAZ33804.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265594|dbj|BAF32856.1| RtrR protein [Pseudomonas syringae pv. actinidiae] gi|115265646|dbj|BAF32907.1| RtrR protein [Pseudomonas syringae pv. phaseolicola] gi|330966722|gb|EGH66982.1| RtrR protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 76 Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +++Q + +S++ +E G+ I ++ + +A L Sbjct: 6 KALGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLACDPSG 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|318058268|ref|ZP_07976991.1| DNA-binding protein [Streptomyces sp. SA3_actG] gi|318078843|ref|ZP_07986175.1| DNA-binding protein [Streptomyces sp. SA3_actF] Length = 204 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ A LT + + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75 >gi|317471621|ref|ZP_07930965.1| hypothetical protein HMPREF1011_01313 [Anaerostipes sp. 3_2_56FAA] gi|316900936|gb|EFV22906.1| hypothetical protein HMPREF1011_01313 [Anaerostipes sp. 3_2_56FAA] Length = 114 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER + IRKE LT + + I ++E+G ++ I + L T Sbjct: 4 ERRLLGKRINQIRKERGLTSEALSEICDVNAGHIRQIESGIRLPSLPLFIRICQALKTAP 63 Query: 78 WKLLK 82 ++LK Sbjct: 64 NEILK 68 >gi|317472077|ref|ZP_07931409.1| hypothetical protein HMPREF1011_01759 [Anaerostipes sp. 3_2_56FAA] gi|316900481|gb|EFV22463.1| hypothetical protein HMPREF1011_01759 [Anaerostipes sp. 3_2_56FAA] Length = 95 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R LTQK++ +RTG Q+ IS+LE G ++ + LA + L P Sbjct: 37 ARISQNLTQKQLSDRTGIDQADISKLENGTRNPTLNLLKRLADGMGMSLKIEFIP 91 >gi|315612466|ref|ZP_07887379.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315447|gb|EFU63486.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 188 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ ++ QS + E GK+ ++I+N ILA LL Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSTPYLL 60 >gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 81 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN ++RKE + Q E+ + G ++ IS +E G +I + LA + + + Sbjct: 17 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSIVVALSLARVFEVKVEDIF 74 >gi|212638622|ref|YP_002315142.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560102|gb|ACJ33157.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 74 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R + LTQKEI G ++S + +E G+ ++ +A L Sbjct: 5 LKKKRLDTGLTQKEIAKLVGISRSTYAMIENGERNPSVSVAKRIADALK 53 >gi|295835540|ref|ZP_06822473.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197699432|gb|EDY46365.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 204 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ A LT + + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75 >gi|162450781|ref|YP_001613148.1| nitrogen regulatory IIA protein [Sorangium cellulosum 'So ce 56'] gi|161161363|emb|CAN92668.1| nitrogen regulatory IIA protein [Sorangium cellulosum 'So ce 56'] Length = 289 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R EA L+ + + +R G + +++S +E G D + +A LD P L Sbjct: 19 FGATLRLLRVEAGLSLRALAHRIGVSSAYLSRVEHGHDAIPTPDRLTAIAGALDLPPAVL 78 Query: 81 LK 82 L+ Sbjct: 79 LE 80 >gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 115 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N +N+RK LTQ+++ RTG ++ I ET + +++++ ILA +T Sbjct: 2 KTTVGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTD 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|54025826|ref|YP_120068.1| hypothetical protein nfa38560 [Nocardia farcinica IFM 10152] gi|54017334|dbj|BAD58704.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 145 Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R R T +E+ + ++SE+E G+ + + + + LD PL Sbjct: 5 REAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVPLS 64 Query: 79 KLL 81 ++L Sbjct: 65 RVL 67 >gi|319900198|ref|YP_004159926.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108] gi|319415229|gb|ADV42340.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108] Length = 101 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RKEAK+TQ E+ R +S+IS +E G T ++ + L + +++ Sbjct: 40 GQILLDARKEAKVTQSELAKRINSTKSYISRIENGDITPSVGVFYRIIDALGLRI-DIVR 98 Query: 83 P 83 P Sbjct: 99 P 99 >gi|317057355|ref|YP_004105822.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449624|gb|ADU23188.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 210 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + N++ +R + LTQKE+ S IS++E K+ I+ + LL Sbjct: 15 YGENYKRLRTDKGLTQKELAKALNIVHSTISDIEKSKNPPTIEQLQAYHKYFGVSYEYLL 74 >gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 210 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RK+ ++Q E+ ++ G Q + + E+GKS+ + + +A L T Sbjct: 1 MSFSELLKQCRKQKGISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADF 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 202 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ + T ++ TG + S +S LE+G ++ + LA L +L+ Sbjct: 12 VGPRLRALRKQKETTLTDLSAATGISVSTLSRLESGSRRPTLELLFPLARAYGVTLDELV 71 >gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 197 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ E+ R G A+S +S+LETG +++ + LA LD + +L+ Sbjct: 27 IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVSQLI 82 >gi|254516541|ref|ZP_05128600.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] gi|219674964|gb|EED31331.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] Length = 186 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R+ +T +++ +G ++S +S++E K+ + +A T + +L Sbjct: 8 LLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERCKANPTLAVTQRIAQTFGISIGEL 67 Query: 81 L 81 + Sbjct: 68 V 68 >gi|158423127|ref|YP_001524419.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158330016|dbj|BAF87501.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 249 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IR++ LT ++ N G + +S++E G+ + ++ + +A L+ P+ L Sbjct: 66 LGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITALF 125 >gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 113 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+A TQ E+ + G +Q + E G DN++ +A L+ + L+ Sbjct: 3 FSERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKKPTQDNLVRIAQILNVSVDYLV 62 >gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316] gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316] Length = 65 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +RK+A L+Q+ + ++ G + IS E G I+ DN L+ + LL+ Sbjct: 7 NRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLLE 65 >gi|322412918|gb|EFY03825.1| hypothetical protein SDD27957_00030 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 121 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + +L+Q + + ++ IS+ E G +T +++N++ L D L +L Sbjct: 4 VAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTTSDLENLVRLTEIFDVNLDELF 63 >gi|317056800|ref|YP_004105267.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449069|gb|ADU22633.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 296 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +RK+ KL+Q+ + + G ++ +++ ET + +I N++ L+ + +LL Sbjct: 3 FADKLRELRKQEKLSQEALAAKIGVSRQAVTKWETERGLPDIGNIMELSALFGVTVEELL 62 >gi|289671819|ref|ZP_06492709.1| peptidase [Pseudomonas syringae pv. syringae FF5] Length = 220 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78 F + + R+ AKL Q E+ R G Q+ IS+LE GKS ++ +A LW Sbjct: 3 FKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKATA-HVAKIADVCGVNALW 59 >gi|258512203|ref|YP_003185637.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478929|gb|ACV59248.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 368 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RM F N R +R+ A L + E+ R G + +E GK + + + LA L T + Sbjct: 14 RMKFPNAVRPLREMAGLNRSELARRAGITPQALGLIEQGKVSPSTHVALRLAKALGTTVE 73 Query: 79 KLLKP 83 L P Sbjct: 74 SLFDP 78 >gi|256423763|ref|YP_003124416.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038671|gb|ACU62215.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 113 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ F +RK+ KL+Q EI + G + I E + +I+ +A L+ L Sbjct: 2 KQITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIATALEVSL 61 Query: 78 WKLL 81 L+ Sbjct: 62 DYLV 65 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + + +I ++ L+TP+ L Sbjct: 101 MLSQNLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVSIL 160 Query: 81 L 81 L Sbjct: 161 L 161 >gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] Length = 114 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R L+Q+E+ G ++S ++ E G+ N + + ++A LL Sbjct: 10 FANVLRLLRNGRGLSQQELALSLGISKSAVNMYERGERQPNFETLELIADFFKVDTDYLL 69 >gi|224024133|ref|ZP_03642499.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] gi|224017355|gb|EEF75367.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] Length = 192 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R ++T +E+ RTG ++ I +E + ++ ++ +A L L Sbjct: 5 KIIGEKIKALRTAQEITLEELAERTGLSKEQIESIEQNINIPSLAPLVKIARALGVRL 62 >gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 122 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RK+A LTQ+++ + G + +S E G I+I+ + LA L Sbjct: 11 GQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYTL 65 >gi|220934873|ref|YP_002513772.1| transcriptional regulator, XRE family [Thioalkalivibrio sp. HL-EbGR7] gi|219996183|gb|ACL72785.1| transcriptional regulator, XRE family [Thioalkalivibrio sp. HL-EbGR7] Length = 218 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+ LT ++ + G ++ +S++E G+ + +++ + L+ L L +L K Sbjct: 39 LREKRQAQSLTIADVADLAGVSRGMLSKIENGQVSTSLETLRKLSGVLGMTLAQLFK 95 >gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5] gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5] Length = 476 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R+ R++R++ LTQ + R G + S+++ +E + +++ +I LA LD Sbjct: 1 MRDAAHLGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHNRRSLSAPLLIKLADILDL 60 Query: 76 PLWKL 80 L L Sbjct: 61 DLKAL 65 >gi|194467602|ref|ZP_03073589.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454638|gb|EDX43535.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 110 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 N R LTQ+++ + + +++S+LE G T++ + + LA+ L+ + +LL Sbjct: 6 QNIVKQRHALHLTQEKLAEKARMSVNFLSKLERGASRTVSAETLQHLANALEISMEELL 64 >gi|315031865|gb|EFT43797.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315171137|gb|EFU15154.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 184 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E L+Q E+ + ++ IS E G++ ++N++++++ D PL L Sbjct: 21 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFL 79 >gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +R E ++Q+ + ++ + IS+ E G S + D +I L+ + + L Sbjct: 1 MFHENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|289672657|ref|ZP_06493547.1| DNA-binding protein [Pseudomonas syringae pv. syringae FF5] Length = 99 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ++ +G ++++SE+E G + ++ + LA + +LL Sbjct: 17 GAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLELL 73 >gi|317048764|ref|YP_004116412.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316950381|gb|ADU69856.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 185 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+E L+Q+ + +G S IS +E K + + + L L + Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|256618071|ref|ZP_05474917.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256597598|gb|EEU16774.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|295114477|emb|CBL33114.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] Length = 167 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E L+Q E+ + ++ IS E G++ ++N++++++ D PL L Sbjct: 4 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFL 62 >gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 205 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P DA + ER+ R +R T + R G ++S IS +E ++ + Sbjct: 6 SPTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLD 63 Query: 68 ILAHTLDTPLWKLL 81 LA L L L Sbjct: 64 KLAAGLGISLAGLF 77 >gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 272 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RKE +LTQ+ + ++ G +S+ ETG++ +I + L+ LD + Sbjct: 2 RDMLAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61 Query: 79 KLL 81 KL Sbjct: 62 KLF 64 >gi|149916994|ref|ZP_01905495.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149822272|gb|EDM81663.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 130 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R E L+Q+E+ R G A + IS+LET + + ++D + +A LD + Sbjct: 7 RESLAEVVRGRRAELGLSQRELAKRAGVADATISKLETQQLSPSLDTLAKIAAGLDLDVA 66 Query: 79 KLL 81 L+ Sbjct: 67 ALI 69 >gi|28628140|gb|AAO34623.1| unknown [Erwinia chrysanthemi] Length = 119 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK A LTQ+ + +R + I E G + +D +I LA L L L+ Sbjct: 13 FPARLIQLRKAADLTQQALADRASIHVNQIRRYEAGSAQPTLDALIRLAKVLRVSLDGLV 72 >gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 476 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R +F + +R++ LTQ + G + S+++ +E + ++ ++ LA T D Sbjct: 6 DRKLFLGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVD 65 Query: 77 LWKL 80 L L Sbjct: 66 LRSL 69 >gi|167772036|ref|ZP_02444089.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] gi|167665834|gb|EDS09964.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM 17241] Length = 96 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKLL 81 + RK+ ++Q+E+ ++ + S IS +E+ + +I + +A L+ ++LL Sbjct: 34 GFRIQFFRKKCGMSQEELAEKSNLSYSTISHIESTSTYPMSIIALYRIAAALNIAPYQLL 93 >gi|302541725|ref|ZP_07294067.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302459343|gb|EFL22436.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 199 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ + LT + +R G + + +S LETG+ ++ ++ LA T T + LL Sbjct: 4 VAPRLRDLRRGSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSDLL 63 >gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 184 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ K+TQKE R G ++ I + E+G+ + ID + +A+ L+ P +LL Sbjct: 8 GKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELL 66 >gi|260550053|ref|ZP_05824267.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406808|gb|EEX00287.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 197 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R T + R ++S IS +E G+++ + LA+ L+ PL K+ Sbjct: 9 AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTKIFT 68 >gi|320009434|gb|ADW04284.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 167 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|296125757|ref|YP_003633009.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017573|gb|ADG70810.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 527 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 25 NFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N ++IR K KLTQ + G Q +IS LE + I +D + LA + +L K Sbjct: 5 NLKDIREKILKLTQSQFAKMLGVRQDYISRLERNANNITLDLLDKLAENTGLSIDELTK 63 >gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 158 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGISSVSTELIDRICKKFNVSYIDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +++R + + + TG +Q IS E G + I+++++ A+ + + Sbjct: 10 LSIGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAKFANAFNVSIVV 69 Query: 80 LL 81 LL Sbjct: 70 LL 71 >gi|295837885|ref|ZP_06824818.1| regulatory protein [Streptomyces sp. SPB74] gi|197699589|gb|EDY46522.1| regulatory protein [Streptomyces sp. SPB74] Length = 284 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ N R +R++ +T + + R G+ +S IS +E GK+ ++ ++ Sbjct: 10 ARIALGNRLRALRRQQGITARALAARCGWHESKISRIENGKALPSVQDLTKWTQACG 66 >gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] Length = 205 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RKE ++Q+ + R G +Q +++ E ST + + +A L L Sbjct: 7 MFSERLKALRKECGISQRALAQRLGVSQQAVAKWEAASSTPGPNALATIADVLGVSSDYL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|126348551|emb|CAJ90275.1| putative transcriptional regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 190 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R E T + + R G ++ + ++E ++ ++ ++ + L + Sbjct: 9 QSLARNVKRWRGERGFTLETLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITT 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|116255118|ref|YP_770952.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259766|emb|CAK02857.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 62 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K++Q+E+ +R +++IS LE + +I+ + A L LL+ Sbjct: 1 MRALRQARKMSQEELAHRASVDRTYISSLERCVYSPSIEVLDRFAAVLGVEPADLLR 57 >gi|92116675|ref|YP_576404.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799569|gb|ABE61944.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 483 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q +I G + S+++ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|55820955|ref|YP_139397.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822875|ref|YP_141316.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736940|gb|AAV60582.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738860|gb|AAV62501.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 111 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R+ LTQ+E+ +R G +Q+ I +E G + + +A +T L P Sbjct: 50 KIKQLRENINLTQQELADRMGKSQASIGRIENGTTNPTYKTLEEIAAATNTRLVVDFVP 108 >gi|28379424|ref|NP_786316.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254557562|ref|YP_003063979.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300768681|ref|ZP_07078578.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272263|emb|CAD65174.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254046489|gb|ACT63282.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493773|gb|EFK28944.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 223 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N + IR++ K+TQ +I + ++ IS E G+S +I ++ ++ D + +LL Sbjct: 3 FSDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|71901612|ref|ZP_00683692.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] gi|71728622|gb|EAO30773.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella fastidiosa Ann-1] Length = 406 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGK--STIN 62 + +S + E M F N R +RK +TQ+++ G+ QS I+ E G + Sbjct: 59 KRVRKISRVVNNEGMTFSENLRRLRKSHGMTQEQLALTCGWGQSRIANYESRGSSAREPS 118 Query: 63 IDNMIILAHTLDTPLWKLL 81 +++ I++ L +LL Sbjct: 119 FNDIEIISRVLGVTKAELL 137 >gi|330719160|ref|ZP_08313760.1| transcription regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E LTQ ++ + ++ + + E G + NI+N++ L+ L+ + +L+K Sbjct: 5 NKIKQLRIENHLTQDQLAQKINVSRQSVLKWEAGTNYPNIENILALSEALNVSIDELIK 63 >gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] Length = 125 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +R L+Q ++ G + S I E G+ + + +A D L Sbjct: 1 MFGQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQGRRFPDQTILTKIADFFDVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|134298461|ref|YP_001111957.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051161|gb|ABO49132.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 64 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R ++Q+++ G + I +E GK ++ I + L L ++ Sbjct: 5 KMKSARAILDMSQEQLAEAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLDEIF 61 >gi|328478429|gb|EGF48170.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 140 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ A L+Q+E+ N++G ++ I+ +E G S +I+ + +A+ L Sbjct: 87 EARQNAGLSQQELANKSGVPKTTIARIERG-SNTSIETLTKIANALGKQ 134 >gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 152 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK+ K+TQ+E+ G + + E G+S I + N LA PL LL Sbjct: 2 NRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLL 59 >gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae] Length = 158 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK +LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|296393892|ref|YP_003658776.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181039|gb|ADG97945.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 178 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R+ A+++ +++ R G + ++S++E G + M +A L Sbjct: 17 VGEYIRTQRELAQVSLRQLAQRAGVSNPYLSQIERGLRNPSAQVMGQIAKALRLS 71 >gi|258625159|ref|ZP_05720075.1| Predicted transcriptional regulator [Vibrio mimicus VM603] gi|258582534|gb|EEW07367.1| Predicted transcriptional regulator [Vibrio mimicus VM603] Length = 505 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +++ Sbjct: 4 SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P+W L Sbjct: 64 MLEVIAEVFQKDPIWFL 80 >gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 209 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R LTQKE G Q ++S +ETG+ + +I L+HT Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGI 63 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 164 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F N + +R+ + + +KE+ + G + E G+ + N+I L+ D P+ Sbjct: 10 MVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPVDV 69 Query: 80 LLKP 83 L P Sbjct: 70 LCSP 73 >gi|206564610|ref|YP_002235373.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198040650|emb|CAR56636.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 180 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 >gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 335 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N + +R +TQ+++ G ++ +S+ E+ K+ +D +++L L L+ Sbjct: 3 FKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDDLV 62 >gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ LTQK++ + + +S+ E G S N+ +I +A LD + +LL Sbjct: 16 FGLFVTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 75 Query: 82 K 82 + Sbjct: 76 R 76 >gi|197123735|ref|YP_002135686.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173584|gb|ACG74557.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 217 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R+ TQ+++ ++ I +E+G+ D +I LA L + L Sbjct: 4 IIGTNVKTLREAMGWTQEDLAAKSKKPVRTIQRVESGEVLPTADTLITLAVALGVEVEDL 63 Query: 81 LK 82 + Sbjct: 64 RR 65 >gi|30019989|ref|NP_831620.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|31415741|ref|NP_852481.1| Transcriptional regulator, MerR family [Bacillus phage phBC6A51] gi|228968837|ref|ZP_04129799.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|29895534|gb|AAP08821.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228790900|gb|EEM38539.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E+ ++ ++S IS LE + ++D++ +A + + LL Sbjct: 4 FGENLKKFRNSHTLTQAELGDKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSIDALL 63 >gi|23100594|ref|NP_694061.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778827|dbj|BAC15095.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E LTQ+++ RTG + + +E G+ ++ I +A L+ L L Sbjct: 3 NRVKLTRMEKNLTQQQLAARTGITRQTVGLIEKGQYNPSLQLCIKIAKELEVTLNDLF 60 >gi|116669412|ref|YP_830345.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609521|gb|ABK02245.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 191 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P I + R R+ +LT +++ + TG + ++S +E ++ ++ + Sbjct: 2 KALPVEPSNIPVA---IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58 Query: 66 MIILAHTLDTPLWKLL 81 ++ L L + L Sbjct: 59 LVTLCQVLSISIGDLF 74 >gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5] gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5] Length = 272 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + N RKE +LTQ+ + ++ G +S+ ETG++ +I + L+ LD + Sbjct: 2 RDMLAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61 Query: 79 KLL 81 KL Sbjct: 62 KLF 64 >gi|290955836|ref|YP_003487018.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260645362|emb|CBG68448.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 210 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAILRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + H + E + R +R+ A LT + G + + +S LETG+ ++ Sbjct: 3 PSEGTHPPEPPADETLPAVAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGRRQPSL 62 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ LA T + +LL Sbjct: 63 PMLLTLARVYGTTVSELL 80 >gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 96 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R ++Q ++ N+ + S++S LE K + + +A L P Sbjct: 4 GQAIKLCRTRRGISQTDLANKAECSVSYLSMLENNKRDPTLSTLTKIATALKLP 57 >gi|227356569|ref|ZP_03840956.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227163325|gb|EEI48252.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 113 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R+ LT E+ + G +Q S E G + +++D + A Sbjct: 18 NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 77 Query: 73 LDTPLWKLLK 82 L L + Sbjct: 78 FGISLSDLFQ 87 >gi|254388551|ref|ZP_05003785.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197702272|gb|EDY48084.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 15 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73 >gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 128 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK L+Q+ + G I + E G + ++ + +A TL P+ ++ Sbjct: 16 VGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLARIARTLGVPVAEMF 75 >gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 130 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N ++RK+ L+Q E+ ++ ++ IS+ E G++T ++ + L + L + Sbjct: 1 MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLTALGDFFEISLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 112 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK A L+Q + G + ISE+E G ++ D + LA T D + Sbjct: 1 MQIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAW 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|153815957|ref|ZP_01968625.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|317500717|ref|ZP_07958935.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089807|ref|ZP_08338700.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846776|gb|EDK23694.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|316897911|gb|EFV19964.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403504|gb|EGG83062.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] Length = 106 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR LTQ+ I N S IS +E + +++ ++ + + LDT Sbjct: 7 EQIGEKLKKIRLSKNLTQEYIANAADVNTSHISNIENNRVKVSLSVLVQICNALDT 62 >gi|91787335|ref|YP_548287.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91696560|gb|ABE43389.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 227 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK L +++ G + S +S++E G +I++ + L++ L PL L+ Sbjct: 42 LGEQVRHRRKALGLPLQQVALGCGISVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 101 Query: 82 K 82 + Sbjct: 102 R 102 >gi|41408954|ref|NP_961790.1| hypothetical protein MAP2856c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466084|ref|YP_882813.1| DNA-binding protein [Mycobacterium avium 104] gi|254776075|ref|ZP_05217591.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41397313|gb|AAS05173.1| hypothetical protein MAP_2856c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167371|gb|ABK68268.1| DNA-binding protein [Mycobacterium avium 104] Length = 108 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REVIGDVLREARTTQGRTLREVSDTARVSLGYLSEVERGRKEPSSELLNAICDALDVPLS 65 Query: 79 KLLK 82 +L Sbjct: 66 SVLT 69 >gi|167037350|ref|YP_001664928.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115765|ref|YP_004185924.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856184|gb|ABY94592.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928856|gb|ADV79541.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 321 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F +NIRK L+Q ++ + ++ + ++E GK + + +L+H L + Sbjct: 9 EAFGEELKNIRKSLGLSQSDVAEQAFISRDTLRKIENGKVIPKHETLELLSHLYKKDLNE 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|75758655|ref|ZP_00738772.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493826|gb|EAO56925.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 8 VGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67 >gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 289 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +RK+ LTQ++ + ++ +S+ E+G+S ++ ++ + + Sbjct: 1 MSFSENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDS 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis DSM 7299] Length = 197 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E + +RKE K+ KE+ G + +S LE+G + +++ + +A L Sbjct: 1 MTEEFNVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGV 60 Query: 76 PLWKLLK 82 + L Sbjct: 61 TIAHLFT 67 >gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] Length = 509 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|283783004|ref|YP_003373758.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253579|ref|ZP_06977369.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441892|gb|ADB14358.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532346|gb|EFH71234.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IR+E +TQ+E+ + ++ + LE G+ +I +A + + ++ Sbjct: 3 NRLEQIRREKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60 >gi|282879967|ref|ZP_06288689.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] gi|281306081|gb|EFA98119.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] Length = 101 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RKEAK+TQ E+ + G +S+IS++E G + L ++L Sbjct: 45 QARKEAKMTQTELAEKAGTTKSYISKIENGLIEPGVGLFFRLINSLG 91 >gi|255292250|dbj|BAH89373.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292348|dbj|BAH89468.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292589|dbj|BAH89700.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293091|dbj|BAH90185.1| XRE family transcriptional regulator [uncultured bacterium] Length = 168 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R+ R L+ E+ R G + ++S+LE +S ++ + L L + Sbjct: 21 EPLRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNM 80 Query: 78 WKLL 81 +L Sbjct: 81 SELF 84 >gi|237748842|ref|ZP_04579322.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380204|gb|EEO30295.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 99 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R +Q ++ + S++S +E + I + + + H L P+ LL Sbjct: 4 GNAIKTCRIRRGYSQTKLAELAECSVSYLSLIEHNQRDITLSTLQKICHALHVPIGILL 62 >gi|254512810|ref|ZP_05124876.1| regulator of the anaerobic catobolism of benzoate BzdR [Rhodobacteraceae bacterium KLH11] gi|221532809|gb|EEE35804.1| regulator of the anaerobic catobolism of benzoate BzdR [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 8 EPHLSDAILRERMI------FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + ER I RN R+ ++++ + +G +Q ++++LE G I Sbjct: 11 STQIDTESEMERAISALMIQVGTRVRNARERKGISRRILSESSGVSQRYLAQLEAGTGNI 70 Query: 62 NIDNMIILAHTLD 74 +I + +AH+LD Sbjct: 71 SIGLLKRVAHSLD 83 >gi|149914872|ref|ZP_01903401.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149811060|gb|EDM70897.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 207 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R++RK T ++ ++ G A+S +S++E G+ + + + LA L+ + Sbjct: 23 EPLNLGERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISV 82 Query: 78 WKLLKP 83 +L P Sbjct: 83 PQLFTP 88 >gi|254224740|ref|ZP_04918356.1| hypothetical protein VCV51_A0080 [Vibrio cholerae V51] gi|125622803|gb|EAZ51121.1| hypothetical protein VCV51_A0080 [Vibrio cholerae V51] Length = 505 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +++ Sbjct: 4 SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P+W L Sbjct: 64 MLEVIAEVFQKDPIWFL 80 >gi|153002903|ref|YP_001377228.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026476|gb|ABS24244.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5] Length = 80 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M RR L L ++ F N ++ R KL+Q+ + + + S+IS LE + T Sbjct: 1 MSRRAYLTRSLHMPALADK--FALNLKSERLRRKLSQEALATKARLSVSYISMLERRQRT 58 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 ++ + LA L LL+ Sbjct: 59 PPLETLECLAKALAVSPTSLLE 80 >gi|90962809|ref|YP_536724.1| transcriptional regulator [Lactobacillus salivarius UCC118] gi|90822003|gb|ABE00641.1| Transcriptional regulator [Lactobacillus salivarius UCC118] gi|300215422|gb|ADJ79835.1| Transcriptional regulator [Lactobacillus salivarius CECT 5713] Length = 376 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ I + R LT+K + +RTG ++ IS E GK+ N++ + LD P Sbjct: 2 EKRINPEKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFP 60 >gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 169 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK++ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|269837331|ref|YP_003319559.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269786594|gb|ACZ38737.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 146 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R+EA+ +Q + GF S++S LE+G T + ++ LA L + Sbjct: 12 FAELLKRFREEARTSQSRLAESAGFDHSYVSRLESGNRTPTREAVVKLADALGLTPEQ 69 >gi|228949839|ref|ZP_04112049.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809897|gb|EEM56308.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 63 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R TQ ++ ++G Q IS +E G +I ++ +A+ L L +LL Sbjct: 6 KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIANALGINLEELL 63 >gi|171915434|ref|ZP_02930904.1| probable transcription regulator [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN R + LT +E+ +G A+ +S++E + T + + L TL L +LL Sbjct: 6 LAQRIRNARLKRGLTLEEVSESSGLAKGLLSKVENFRVTPTLTTLAKLTETLGIKLSELL 65 Query: 82 K 82 + Sbjct: 66 E 66 >gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99] gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99] Length = 115 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N +N+RK LTQ+++ RTG ++ I ET + +++++ +LA +T Sbjct: 2 KTTVGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|152987569|ref|YP_001349079.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150962727|gb|ABR84752.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 258 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + R+ L+ E+ R G A+S +S+LE G +++ + LA LD + +L Sbjct: 83 LLAASIKRERERLGLSISELAKRAGIAKSTLSQLEAGVGNPSLETLWALAMALDVQVTRL 142 Query: 81 L 81 + Sbjct: 143 I 143 >gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] Length = 158 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S+++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|116050529|ref|YP_790652.1| hypothetical protein PA14_31160 [Pseudomonas aeruginosa UCBPP-PA14] gi|115585750|gb|ABJ11765.1| hypothetical protein PA14_31160 [Pseudomonas aeruginosa UCBPP-PA14] Length = 107 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R + + F R +R E + Q+ + + G +S + ++E G+ Sbjct: 17 PGRPAGATTFDAELAQA---FGAAVRALRTERGIAQESLAHLAGIERSHMGKVERGEHMP 73 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + +A L+ L+ Sbjct: 74 TLALIFKIAGALECSTAVLM 93 >gi|83942534|ref|ZP_00954995.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83846627|gb|EAP84503.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 229 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ N+ G A+S +S++E G+ + + + LA L+ + +L Sbjct: 49 LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLF 108 Query: 82 KP 83 P Sbjct: 109 TP 110 >gi|332880985|ref|ZP_08448655.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681159|gb|EGJ54086.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 117 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + IR+ + TQ++I G +S S E G + D + L++ + Sbjct: 6 QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILEKLSNLFGCEPFI 65 Query: 80 LLK 82 L + Sbjct: 66 LFE 68 >gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 244 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + N R R+ A L+ KE+ R + S +S++E G ++ LA L Sbjct: 2 EPDPVAVGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGVKHPSLAVAATLAQILGR 61 Query: 76 PL 77 L Sbjct: 62 SL 63 >gi|283458481|ref|YP_003363108.1| putative transcriptional regulator [Rothia mucilaginosa DY-18] gi|283134523|dbj|BAI65288.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18] Length = 135 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 36/79 (45%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ ++ R R++R+ T +E+ R + ++SE+E G+ + Sbjct: 22 RQAAPVVEEAKVVPLRQAIGEVLRDVRQRQGRTLREVSQRARVSLGYLSEVERGQKEASS 81 Query: 64 DNMIILAHTLDTPLWKLLK 82 + + + LD P+ ++L+ Sbjct: 82 ELLAWICQALDIPMSQMLR 100 >gi|258676996|ref|YP_003204972.1| hypothetical protein CLI_0799 [Clostridium botulinum F str. Langeland] gi|256258834|gb|ACU64823.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295318164|gb|ADF98541.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 182 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R + L+ ++ +G ++ +S++E G+S I+ + +A+ L KL Sbjct: 6 IISANLKKLRTDRNLSLGQLSQLSGVSKVMLSQIEKGESNSTINTIWKIANGLQVTYTKL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|256370256|ref|YP_003107767.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|256000419|gb|ACU48818.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] Length = 642 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK LT + + +++ IS LE G ++ + LA+ L +L+ Sbjct: 2 NLACLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58 >gi|296138750|ref|YP_003645993.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026884|gb|ADG77654.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 191 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+E +T + TG + S +S LE G ++ ++ LA T PL +L+ Sbjct: 12 VGPRLRAIRQERDITLTAVAEATGISVSTLSRLEGGTRKPTLELLLPLARTYGLPLDELV 71 >gi|187935228|ref|YP_001886792.1| hypothetical protein CLL_A2604 [Clostridium botulinum B str. Eklund 17B] gi|187723381|gb|ACD24602.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 64 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q ++ G + I +E GK ++ I + L L + Sbjct: 5 KLKSARAALDLSQGQLAEIVGVTRQTIGMIEAGKYNPSLQLCIAICKALGKTLNDIF 61 >gi|254284584|ref|ZP_04959551.1| hypothetical protein A33_A0144 [Vibrio cholerae AM-19226] gi|150425369|gb|EDN17145.1| hypothetical protein A33_A0144 [Vibrio cholerae AM-19226] Length = 505 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +++ Sbjct: 4 SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P+W L Sbjct: 64 MLEVIAEVFQKDPIWFL 80 >gi|120435300|ref|YP_860986.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577450|emb|CAL65919.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 99 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH-TLDTPL 77 + RK A+LTQ+++ RTG +S+IS +E G S I I L L L Sbjct: 42 LKEARKSAQLTQEQLAERTGTKKSYISRIERGLSDIQITTYQKLIEIGLGKEL 94 >gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 191 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + +T E+ TG ++S +S LE G+ +++ ++ +A PL KL+ Sbjct: 13 GPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLV 71 >gi|50122571|ref|YP_051738.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49613097|emb|CAG76548.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 184 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ E+ R G A+S +S+LE+G +++ + LA LD + +L+ Sbjct: 14 IRRERERLNLSVTELAKRAGLAKSTLSQLESGIGNPSLETLWALAMALDVQVSQLI 69 >gi|83953755|ref|ZP_00962476.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841700|gb|EAP80869.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 236 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ N+ G A+S +S++E G+ + + + LA L+ + +L Sbjct: 56 LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLF 115 Query: 82 KP 83 P Sbjct: 116 TP 117 >gi|75759233|ref|ZP_00739334.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493296|gb|EAO56411.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 4 LYLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSL 63 Query: 81 L 81 Sbjct: 64 F 64 >gi|331085146|ref|ZP_08334232.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407929|gb|EGG87419.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 106 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R IR LTQ+ I N S IS +E + +++ ++ + + LDT Sbjct: 10 GEKLRTIRLSKNLTQEYIANAVDINTSHISNIENNRVKVSLSTLVQICNALDT 62 >gi|302552520|ref|ZP_07304862.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302470138|gb|EFL33231.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 415 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMI 67 P L+ A+ E + FR RK L+Q ++ G Q +S++E G+ + +++ Sbjct: 12 PVLASAVTDED--WGQVFRTYRKLTGLSQTKLGELVGLVQPDVSDIERGRRRVTSLEVRG 69 Query: 68 ILAHTLDTPLW 78 +A L P + Sbjct: 70 RIATGLGIPPF 80 >gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N+ + R A +QKE+ ++TG + +S +E G ++ + L H L+ L Sbjct: 1 MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDT 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 115 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQ ++ + GF++ I E G + + ++ +A + LL Sbjct: 7 FKERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQGSREPDQETLLKIAKFFNVSSDYLL 66 >gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3] gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3] Length = 115 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N + +RK LTQ+++ +RTG ++ I ET + +++++ +LA +T Sbjct: 2 KTTVGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|225026220|ref|ZP_03715412.1| hypothetical protein EUBHAL_00461 [Eubacterium hallii DSM 3353] gi|238925886|ref|YP_002939404.1| hypothetical protein EUBREC_3544 [Eubacterium rectale ATCC 33656] gi|224956471|gb|EEG37680.1| hypothetical protein EUBHAL_00461 [Eubacterium hallii DSM 3353] gi|238877563|gb|ACR77270.1| Hypothetical protein EUBREC_3544 [Eubacterium rectale ATCC 33656] gi|291528305|emb|CBK93891.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291545569|emb|CBL18677.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] gi|291551051|emb|CBL27313.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 66 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N ++IR+E L Q ++ G I +E G+ +++ I LAH L P+ + + Sbjct: 5 NTLKDIREERNLIQADLAEAIGSCSQTIGRIERGERNPSLEIAIRLAHYLKVPVEDIFQ 63 >gi|167766468|ref|ZP_02438521.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] gi|167711877|gb|EDS22456.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] Length = 123 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK+ L+Q+ + + G + + +S +E G++ I+I+ + L L Sbjct: 16 ELIQLGERVRQKRKDCHLSQETLAEKVGISVNTVSRIEGGQAAISIEIFVKLVEVLGADA 75 Query: 78 WKLL 81 +LL Sbjct: 76 NELL 79 >gi|134098702|ref|YP_001104363.1| Cro/CI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003611|ref|ZP_06561584.1| Cro/CI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911325|emb|CAM01438.1| transcriptional regulator, Cro/CI family [Saccharopolyspora erythraea NRRL 2338] Length = 194 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R R A L+ +E+ R ++ + LE + N+ ++ LA TL + L+ Sbjct: 11 VAHNVRAARVRAGLSLEELGRRAQVSKGALVALENAQGNPNLATLVRLADTLGVSVSALM 70 Query: 82 K 82 + Sbjct: 71 Q 71 >gi|15964694|ref|NP_385047.1| hypothetical protein SMc00089 [Sinorhizobium meliloti 1021] gi|307322166|ref|ZP_07601538.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15073872|emb|CAC45513.1| Hypothetical protein SMc00089 [Sinorhizobium meliloti 1021] gi|306892187|gb|EFN23001.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 118 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 6 RDEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 RDE ++ + R++ N + R + +E+ + + ++SE+E+GK ++ Sbjct: 43 RDELVPAEVV--NRLLAGENAVKVWRSHRGMAARELAKKARISAPYLSEIESGKKDGSLS 100 Query: 65 NMIILAHTLDTPLWKLLK 82 M +A L L L + Sbjct: 101 TMKKIAEALSVDLDDLAQ 118 >gi|322372760|ref|ZP_08047296.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|321277802|gb|EFX54871.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 113 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N + R +A LTQ E+ + G AQ+ + E G D + LA L+T L Sbjct: 1 MLKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDDTVEKLAEILNTSFEIL 60 >gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 130 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + +RK LTQ+ + + I E G+ + +++ + +A L Sbjct: 25 KKIIGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEFSPSVEQIAKMADVLGVSPA 84 Query: 79 KLL 81 +++ Sbjct: 85 EII 87 >gi|294084784|ref|YP_003551542.1| transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664357|gb|ADE39458.1| transcriptional regulator, putative [Candidatus Puniceispirillum marinum IMCC1322] Length = 468 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 19 RMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R F R +R+++ TQ ++ + G + ++++ LE + ++++ ++ L+ + Sbjct: 2 RKTFIGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQRSLSVQVLMALSDEYNV 59 >gi|288870406|ref|ZP_06113975.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867355|gb|EFC99653.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 100 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 LTQ+E+ + G A + ++E G ++ID M+ +A L+ L L+ Sbjct: 4 GLTQEELAEKIGRAYKYCQDIERGTCGMSIDTMLSIAACLNISLDYLI 51 >gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] Length = 509 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|52787331|ref|YP_093160.1| YvaO [Bacillus licheniformis ATCC 14580] gi|163119661|ref|YP_080738.2| posible transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319647810|ref|ZP_08002028.1| YvaO protein [Bacillus sp. BT1B_CT2] gi|52349833|gb|AAU42467.1| YvaO [Bacillus licheniformis ATCC 14580] gi|145903171|gb|AAU25100.2| posible transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317390151|gb|EFV70960.1| YvaO protein [Bacillus sp. BT1B_CT2] Length = 133 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F ++ R +R+ KLT ++ +G + + IS +E GK + LA L P +L Sbjct: 4 FGHHLRQLRERKKLTVNQLAMYSGVSSAGISRIENGKRGVPKPATIRKLADALKVPYEEL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|83313343|ref|YP_423607.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948184|dbj|BAE53048.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 476 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R+ KL+Q + + S+++++E + + + ++ +A LD L Sbjct: 5 KKLFLGYKLRRLREGKKLSQAALAVLLEVSPSYLNQIENNQRPLTVPVLLRIAKVLDVDL 64 Query: 78 WKLLK 82 L++ Sbjct: 65 ATLVE 69 >gi|312887011|ref|ZP_07746615.1| helix-turn-helix domain protein [Mucilaginibacter paludis DSM 18603] gi|311300323|gb|EFQ77388.1| helix-turn-helix domain protein [Mucilaginibacter paludis DSM 18603] Length = 77 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R KLT +++ R S I ++E+GK I + +I LA L+ + Sbjct: 11 KQLGGRIKVLRLAKKLTFRKMALRCNVDFSDIQKIESGKVNITVITLIELAKALEVEPME 70 Query: 80 LL 81 LL Sbjct: 71 LL 72 >gi|269966652|ref|ZP_06180731.1| transcriptional regulator, HTH_3 family [Vibrio alginolyticus 40B] gi|269828719|gb|EEZ82974.1| transcriptional regulator, HTH_3 family [Vibrio alginolyticus 40B] Length = 232 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 49 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 108 Query: 78 WKLLKP 83 +L +P Sbjct: 109 PQLFEP 114 >gi|257898126|ref|ZP_05677779.1| transcriptional regulator [Enterococcus faecium Com15] gi|257836038|gb|EEV61112.1| transcriptional regulator [Enterococcus faecium Com15] Length = 370 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + N N+RKE +TQ+ + G ++ +S+ ETG+S ++ + LA D + Sbjct: 2 EELSLSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268] Length = 67 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+E+ + G ++ I+ +E G I + + H L L +L Sbjct: 5 RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELF 61 >gi|255280221|ref|ZP_05344776.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269312|gb|EET62517.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 330 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI ++RK+ +Q+E+ + ++ +S+ E G+S ++D ++ L+ L Sbjct: 1 MILAEKIMDLRKKNGWSQEELAQQLRVSRQSVSKWEGGQSVPDLDKLLALSQIFGVTLDY 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] Length = 198 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ K+TQKE R G ++ I + E+G+ + ID + +A+ L+ P +LL Sbjct: 18 GKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELL 76 >gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 206 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 26 VGPRLRRIRKERGATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELV 85 >gi|328676885|gb|AEB27755.1| Predicted transcriptional regulator [Francisella cf. novicida Fx1] Length = 75 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ LTQ ++ +G +I E+E GKST +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLAGISGLGIRFIGEVENGKSTAHIGKVIQLASSLG 63 >gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + T + TG + S +S LE+G+ N++ ++ LA PL +L+ Sbjct: 12 VGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQRRPNLELLLPLAKAHQVPLDELV 71 >gi|308123712|gb|ADO14693.1| C.OkrAI [Oceanobacter kriegii] Length = 78 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R L+Q+++ G +++IS LE G+ ++ +++ L+ +L+TP ++L Sbjct: 7 FGRILKQLRTAKGLSQEQLALSCGLDRTFISMLERGQRQPSLSSILSLSKSLETPAHEML 66 Query: 82 K 82 K Sbjct: 67 K 67 >gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 65 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ + G ++ I+ +E G+ I+ + L L +L Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILGKTLDELF 62 >gi|229082960|ref|ZP_04215381.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] gi|228700360|gb|EEL52925.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] Length = 144 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+++ + G + + + E+ KS +IDN+I+L+ + + +L+ Sbjct: 6 LGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTIDELI 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|229100652|ref|ZP_04231502.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] gi|228682832|gb|EEL36860.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] Length = 142 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+++ + G + + + E+ KS +IDN+I+L+ + + +L+ Sbjct: 6 LGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTIDELI 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|295839211|ref|ZP_06826144.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197695663|gb|EDY42596.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 77 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L +R + R R EA +TQ+ + RTG + + +E G + +D+++++A L Sbjct: 10 VLDQRRAIGDRIRTARLEAAITQETLAERTGLDRKTVVRVEGGTHSTLLDHLLLIARALG 69 Query: 75 TPLWKLLK 82 L L++ Sbjct: 70 RLLADLVR 77 >gi|148975472|ref|ZP_01812343.1| transcriptional regulator, HTH_3 family protein [Vibrionales bacterium SWAT-3] gi|145964900|gb|EDK30151.1| transcriptional regulator, HTH_3 family protein [Vibrionales bacterium SWAT-3] Length = 207 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila] gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] Length = 91 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M+ + RKE +T E+ ++ G + +S E G + I++++++ ++ L+TP Sbjct: 5 MLVGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTP 61 >gi|90422889|ref|YP_531259.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104903|gb|ABD86940.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 480 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q ++ G + S+I+ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|317126820|ref|YP_004093102.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315471768|gb|ADU28371.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 68 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I+ R RK TQ+E + + S + E+E G + + ++ + L+ L Sbjct: 2 EDFIWGRRIRAFRKLKGFTQEEFARQLSISVSVLGEIERGSRVPSDELLVSVTEVLNVTL 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|257886939|ref|ZP_05666592.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257822993|gb|EEV49925.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 370 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + N N+RKE +TQ+ + G ++ +S+ ETG+S ++ + LA D + Sbjct: 2 EELSLSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|302518956|ref|ZP_07271298.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302427851|gb|EFK99666.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 287 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLWK 79 F R +R+ + LTQ E+ + + S+I++ E G+ N D L L T W+ Sbjct: 17 FGGELRRLREASGLTQAELAAQVYVSASYIAQFEAGRRKPNEDVARRLDDALKTGGSFWR 76 Query: 80 LL 81 ++ Sbjct: 77 IV 78 >gi|302528605|ref|ZP_07280947.1| predicted protein [Streptomyces sp. AA4] gi|302437500|gb|EFL09316.1| predicted protein [Streptomyces sp. AA4] Length = 197 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +T +E+ R G + ++S E G ++I++ ++ +A L+ +LL Sbjct: 10 VGAEIKRVRSSLGMTLRELAERCGLSPGFLSLAERGVNSISLTSLFAIAGALEVDAVELL 69 >gi|229192878|ref|ZP_04319836.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876] gi|228590717|gb|EEK48578.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876] Length = 209 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDT 75 ++ R +RKE KL+ ++ TG + ++S+LETG +I+ + LA LD Sbjct: 3 KIELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLETGSNKKPSIEILEKLALGLDI 60 >gi|15601711|ref|NP_233342.1| hypothetical protein VCA0958 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586667|ref|ZP_01676451.1| hypothetical protein VC274080_A0999 [Vibrio cholerae 2740-80] gi|121726421|ref|ZP_01679695.1| hypothetical protein VCV52_A0910 [Vibrio cholerae V52] gi|147672118|ref|YP_001215122.1| hypothetical protein VC0395_0281 [Vibrio cholerae O395] gi|153801392|ref|ZP_01955978.1| hypothetical protein A51_C0942 [Vibrio cholerae MZO-3] gi|153818327|ref|ZP_01970994.1| hypothetical protein A5C_A1168 [Vibrio cholerae NCTC 8457] gi|153821038|ref|ZP_01973705.1| hypothetical protein A5E_A0970 [Vibrio cholerae B33] gi|153827802|ref|ZP_01980469.1| hypothetical protein A59_A0011 [Vibrio cholerae 623-39] gi|227812524|ref|YP_002812534.1| hypothetical protein VCM66_A0918 [Vibrio cholerae M66-2] gi|229505902|ref|ZP_04395411.1| hypothetical protein VCF_001112 [Vibrio cholerae BX 330286] gi|229510244|ref|ZP_04399724.1| hypothetical protein VCE_001648 [Vibrio cholerae B33] gi|229514370|ref|ZP_04403831.1| hypothetical protein VCB_002020 [Vibrio cholerae TMA 21] gi|229517626|ref|ZP_04407071.1| hypothetical protein VCC_001649 [Vibrio cholerae RC9] gi|229522483|ref|ZP_04411899.1| hypothetical protein VIF_003043 [Vibrio cholerae TM 11079-80] gi|229526492|ref|ZP_04415896.1| hypothetical protein VCA_000620 [Vibrio cholerae bv. albensis VL426] gi|229528143|ref|ZP_04417534.1| hypothetical protein VCG_001223 [Vibrio cholerae 12129(1)] gi|229605434|ref|YP_002876138.1| hypothetical protein VCD_000376 [Vibrio cholerae MJ-1236] gi|254850124|ref|ZP_05239474.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297579993|ref|ZP_06941920.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499732|ref|ZP_07009538.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9658396|gb|AAF96854.1| hypothetical protein VC_A0958 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549095|gb|EAX59130.1| hypothetical protein VC274080_A0999 [Vibrio cholerae 2740-80] gi|121631169|gb|EAX63544.1| hypothetical protein VCV52_A0910 [Vibrio cholerae V52] gi|124123058|gb|EAY41801.1| hypothetical protein A51_C0942 [Vibrio cholerae MZO-3] gi|126511140|gb|EAZ73734.1| hypothetical protein A5C_A1168 [Vibrio cholerae NCTC 8457] gi|126521412|gb|EAZ78635.1| hypothetical protein A5E_A0970 [Vibrio cholerae B33] gi|146314501|gb|ABQ19041.1| hypothetical protein VC0395_0281 [Vibrio cholerae O395] gi|148876647|gb|EDL74782.1| hypothetical protein A59_A0011 [Vibrio cholerae 623-39] gi|227011666|gb|ACP07877.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227015605|gb|ACP11814.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229334505|gb|EEN99990.1| hypothetical protein VCG_001223 [Vibrio cholerae 12129(1)] gi|229336650|gb|EEO01668.1| hypothetical protein VCA_000620 [Vibrio cholerae bv. albensis VL426] gi|229340468|gb|EEO05474.1| hypothetical protein VIF_003043 [Vibrio cholerae TM 11079-80] gi|229345662|gb|EEO10635.1| hypothetical protein VCC_001649 [Vibrio cholerae RC9] gi|229348350|gb|EEO13308.1| hypothetical protein VCB_002020 [Vibrio cholerae TMA 21] gi|229352689|gb|EEO17629.1| hypothetical protein VCE_001648 [Vibrio cholerae B33] gi|229356253|gb|EEO21171.1| hypothetical protein VCF_001112 [Vibrio cholerae BX 330286] gi|229371920|gb|ACQ62342.1| hypothetical protein VCD_000376 [Vibrio cholerae MJ-1236] gi|254845829|gb|EET24243.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297535639|gb|EFH74473.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297541713|gb|EFH77764.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 505 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +++ Sbjct: 4 SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P+W L Sbjct: 64 MLEVIAEVFQKDPIWFL 80 >gi|328464746|gb|EGF36071.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 50 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 27/44 (61%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + R++R LTQ+E+ RT ++ +IS++E +S+ +++ Sbjct: 4 GSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETF 47 >gi|301630833|ref|XP_002944521.1| PREDICTED: uncharacterized HTH-type transcriptional regulator ydcN-like [Xenopus (Silurana) tropicalis] Length = 212 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + +D D + + N + +R + L+ + G +++ ++++E+G+S Sbjct: 13 LPSKPKDCNSGDDDAIGQ--CVAQNLQRLRSKRYLSLDALARNCGVSRAMLAQIESGRSV 70 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 +I + +A L + L+ Sbjct: 71 PSIKVLCKIAKGLKVSVAAFLE 92 >gi|258622468|ref|ZP_05717490.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262164497|ref|ZP_06032235.1| predicted transcriptional regulator [Vibrio mimicus VM223] gi|258585168|gb|EEW09895.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262026877|gb|EEY45544.1| predicted transcriptional regulator [Vibrio mimicus VM223] Length = 505 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +++ Sbjct: 4 SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P+W L Sbjct: 64 MLEVIAEVFQKDPIWFL 80 >gi|229136572|ref|ZP_04265260.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228646884|gb|EEL03031.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] Length = 65 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R E LTQ+E+ + + IS +E+ K ++ I +A TLD L KL Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDESLDKLF 61 >gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 163 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +R+ L+Q + + + I+ E G +I+ + LA D + Sbjct: 3 MTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSIDF 62 Query: 80 LL 81 L+ Sbjct: 63 LV 64 >gi|197337412|ref|YP_002158337.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314664|gb|ACH64113.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 218 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IR + LT +E RTG A+S +S++E + + + LA LD + ++ Sbjct: 39 LGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIF 98 Query: 82 KP 83 +P Sbjct: 99 EP 100 >gi|258517093|ref|YP_003193315.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780798|gb|ACV64692.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 61 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 R +R + +TQ+++ + G ++ ++SELE G K + + +A D + +L Sbjct: 4 IRKLRIKYGVTQEKLAQKVGISRIYLSELENGRKKNPSTTLLEKIAKNFDVRVSEL 59 >gi|222033322|emb|CAP76062.1| hypothetical protein LF82_280 [Escherichia coli LF82] Length = 381 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ LT E+ ++ IS E G + + D + +A L P Sbjct: 18 RRLEEAREAKGLTMAELARVLNISRQAISSFEKGLKSPSADTLSAIAKVLGFP 70 >gi|167035167|ref|YP_001670398.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166861655|gb|ABZ00063.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 81 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L+Q+ + + + ++ + ++E G+ + N++ +A L +L Sbjct: 17 LGTAIRARRKLLMLSQEALADLSEIDRAHMGKIERGERNVTFLNVVKIATALGCKPSDVL 76 >gi|150389363|ref|YP_001319412.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949225|gb|ABR47753.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 226 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 F + IRK +TQ+E+ R G +IS++E + + D +I LA L+ + +L Sbjct: 4 FGKYLKEIRKGR-MTQRELAKRIGVGYPYISKIENNVEPPPSDDVLIKLAQALEVDVDEL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 117 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 L +R+ +RK + TQ ++ R G IS +E G +T ++ + ++H Sbjct: 7 PGKPLAQRL--GTQIATLRKTKEWTQADLAERIGVEPETISRVERGATTPSLQTLEKISH 64 Query: 72 TLDTPLWKLL 81 L + +LL Sbjct: 65 CLRVRIGELL 74 >gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] Length = 508 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ RK+ +TQ ++ +QS I +E+G ++++ + + L++P+ Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRITEALESPI 64 >gi|167588649|ref|ZP_02381037.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 180 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60 >gi|83310829|ref|YP_421093.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945670|dbj|BAE50534.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R + LTQ+++ R IS +E G T +D + +A LDTP+ Sbjct: 49 KQQIGLKVRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTPM 107 >gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 165 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E L+Q+++ G + +S E G++ +I +I LA + +LL Sbjct: 10 LKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRTMPDISIIIELADYYGIDIRELL 65 >gi|228902129|ref|ZP_04066293.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] gi|228857555|gb|EEN02051.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] Length = 262 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 327 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ LTQ+E+ + G ++ +S+ E G S +I+ +I L+ Sbjct: 1 MILSDKIILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSIPDINKIIQLSDVFGVKTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 190 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 1 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 60 Query: 80 LLK 82 + Sbjct: 61 FFR 63 >gi|17228887|ref|NP_485435.1| hypothetical protein alr1392 [Nostoc sp. PCC 7120] gi|17130739|dbj|BAB73349.1| alr1392 [Nostoc sp. PCC 7120] Length = 290 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F N ++ R + +Q ++ + +Q IS LE+G++ + D ++ LA LD PL Sbjct: 11 FGNLLKHWRNQRSFSQLDLAVASEVSQRHISFLESGRAKPSRDMILQLATVLDVPL 66 >gi|14591505|ref|NP_143586.1| hypothetical protein PH1748 [Pyrococcus horikoshii OT3] gi|3258179|dbj|BAA30862.1| 192aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 192 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + IRK +TQ+E+ + G Q++I++LE GK + + L Sbjct: 11 RDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60 >gi|75762759|ref|ZP_00742588.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489747|gb|EAO53134.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 136 Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + + + +S+ E G+ + +I++ + L LL Sbjct: 3 FGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|332523977|ref|ZP_08400229.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332315241|gb|EGJ28226.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 194 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+A +Q+++ + ++ IS E KS +I ++I LA+ + L +L+ Sbjct: 3 LGKKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFNLSLDQLV 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|238916178|ref|YP_002929695.1| hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC 27750] gi|238871538|gb|ACR71248.1| Hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC 27750] Length = 98 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 DAI E M + + R +TQKE+ RTG Q+ IS+LE G +++ + LA Sbjct: 22 DAIQPE-MDVIRAIVDARTSQNMTQKELAERTGINQADISKLENGTRNPSVNLLKRLADA 80 >gi|115379785|ref|ZP_01466856.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310820720|ref|YP_003953078.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363203|gb|EAU62367.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309393792|gb|ADO71251.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 116 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 23 VNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R + + TQ+E+ R + S++S +E G+ +++ + LA L L +L Sbjct: 9 GQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVAHVETLAALAGALGVSLGEL 68 Query: 81 L 81 Sbjct: 69 F 69 >gi|119714341|ref|YP_921306.1| helix-turn-helix domain-containing protein [Nocardioides sp. JS614] gi|119535002|gb|ABL79619.1| helix-turn-helix domain protein [Nocardioides sp. JS614] Length = 210 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + L+ + +++G A+ +S LE G ++ + L+ L P+ +L+ Sbjct: 17 RAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIFALSRGLGVPIGELV 74 >gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] gi|316253236|gb|EFV12637.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] Length = 486 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R +RD P S + L + R +R E L+Q + + S+++++E I Sbjct: 2 RVRRDFPRSSYSDLVAKTYVGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPIT 61 Query: 63 IDNMIILAHTLDT 75 + ++ L+ L Sbjct: 62 MPLLLRLSEKLGV 74 >gi|325680396|ref|ZP_08159949.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107919|gb|EGC02182.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 76 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLWKLLK 82 RK LTQ+++ ++I +E T+++D + +A L+ +KLLK Sbjct: 20 RKLRGLTQEQLAEMIDKNLAFIGAVEAPNVNRTVSLDTLFDIADALNVEPYKLLK 74 >gi|225378006|ref|ZP_03755227.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] gi|225210159|gb|EEG92513.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] Length = 120 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R+ + R R + +Q E+ R A + S++E G ++ + M+ ++ LD L Sbjct: 9 DRLAVGDRIRKKRVQLGFSQDEVAERIDRAPKYCSDIERGTCGMSTETMLAISECLDMSL 68 Query: 78 WKLL 81 ++ Sbjct: 69 DYMM 72 >gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RKE +TQ+E+ ++ +S+ E G S +I + LA LD KLL Sbjct: 6 GRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLSYPDISLIPKLADILDIDPNKLL 64 >gi|59713884|ref|YP_206659.1| transcriptional regulator [Vibrio fischeri ES114] gi|59482132|gb|AAW87771.1| transcriptional regulator [Vibrio fischeri ES114] Length = 218 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IR + LT +E RTG A+S +S++E + + + LA LD + ++ Sbjct: 39 LGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIF 98 Query: 82 KP 83 +P Sbjct: 99 EP 100 >gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 203 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ LTQ+E+ R G IS +E G+ + +I ++ + + L + Sbjct: 25 VGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSLAEFF 84 Query: 82 K 82 Sbjct: 85 T 85 >gi|319938757|ref|ZP_08013121.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811807|gb|EFW08073.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 135 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ + LTQ+ + + ++ IS ET K +I ++ L+ L +LLK Sbjct: 4 GRKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDELLK 63 >gi|295093485|emb|CBK82576.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 68 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++E++ N+ + +R A L+Q ++ G +++ IS +ETG+ +IL LD Sbjct: 1 MKEQLHLKNHLKEVRTAANLSQTQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 118 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RK+ TQ+++ G Q +S E GK +++D ++ LA Sbjct: 10 GKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLYG 61 >gi|213161102|ref|ZP_03346812.1| hypothetical protein Salmoneentericaenterica_14098 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428345|ref|ZP_03361095.1| hypothetical protein SentesTyphi_24034 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 265 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + NN + +R + +TQ E+ G +Q I +ETGK + + + LD PL Sbjct: 1 MLQNNIKQLRTQLSITQHELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57 >gi|254465630|ref|ZP_05079041.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686538|gb|EDZ47020.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 207 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T + N+ G A+S +S++E G+ + + + LA L + +L Sbjct: 27 LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|153212196|ref|ZP_01947991.1| hypothetical protein A55_A0826 [Vibrio cholerae 1587] gi|124116748|gb|EAY35568.1| hypothetical protein A55_A0826 [Vibrio cholerae 1587] Length = 505 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK +++ Sbjct: 4 SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63 Query: 65 NMIILAHTLDT-PLWKL 80 + ++A P+W L Sbjct: 64 MLEVIAEVFQKDPIWFL 80 >gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] Length = 222 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RKE T ++ RTG + +S+LE GK+ +N ++ LA L + L Sbjct: 25 GRRLRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTDLNFSSVNKLATGLGLAVTDLTN 84 Query: 83 P 83 P Sbjct: 85 P 85 >gi|183602320|ref|ZP_02963687.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219682676|ref|YP_002469059.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190254|ref|YP_002967648.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195660|ref|YP_002969215.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218534|gb|EDT89178.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis HN019] gi|219620326|gb|ACL28483.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240248646|gb|ACS45586.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250214|gb|ACS47153.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177969|gb|ADC85215.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] gi|295793241|gb|ADG32776.1| putative transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 90 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER+ R+EA+LTQ+++ R+G ++ I+ +E GK ++ + LA + Sbjct: 23 AEIERLNAAVAVSRAREEARLTQEQLAERSGVSRVTINRIERGKLNPSMKTLSRLARAMG 82 Query: 75 TP 76 Sbjct: 83 KQ 84 >gi|168214024|ref|ZP_02639649.1| HTH-type transcriptional regulator HipB [Clostridium perfringens CPE str. F4969] gi|170714468|gb|EDT26650.1| HTH-type transcriptional regulator HipB [Clostridium perfringens CPE str. F4969] Length = 64 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R LTQKE+ N+ G + +S+ E G I + M+ LA LDT + +L Sbjct: 2 KIKLKRISKGLTQKELANKVGISHVTLSKFENGSYENITLRTMLKLAAALDTTVHELF 59 >gi|67078040|ref|YP_245660.1| transcriptional regulator [Bacillus cereus E33L] gi|66970346|gb|AAY60322.1| transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+++ + G + + + E+ KS +IDN+I+L+ + + +L+ Sbjct: 6 LGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|56476736|ref|YP_158325.1| hypothetical protein ebB68 [Aromatoleum aromaticum EbN1] gi|56312779|emb|CAI07424.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 97 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +R P S E + F R R E + Q+E+ + +S + ++E G+ + Sbjct: 7 QRGRPVGSTTYEPEPALAFGQAVRAARMEQGMAQEELASLAEIERSHMGKIERGEHMPTL 66 Query: 64 DNMIILAHTLDTPLWKLL 81 ++ +A L+ L+ Sbjct: 67 ALILRIAAALNRSAADLI 84 >gi|28900659|ref|NP_800314.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260365534|ref|ZP_05778071.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus K5030] gi|260877597|ref|ZP_05889952.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AN-5034] gi|260895390|ref|ZP_05903886.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|28809039|dbj|BAC62147.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus RIMD 2210633] gi|308085253|gb|EFO34948.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308090582|gb|EFO40277.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AN-5034] gi|308114316|gb|EFO51856.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus K5030] Length = 207 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + I ++ ++IR + +T +E RTG A+S +S++E + + Sbjct: 10 PSMTLAKEQNDQNIEPLKL--GQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 68 TFQAMQKLALGLQIDMPQLFEP 89 >gi|324323883|gb|ADY24926.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 125 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N RN+R + LT KE+ G + + IS E G N+D + ++A + L Sbjct: 5 IFGKNLRNLRTQKGLTLKELGQELGVSGNTISGWELGNKEPNMDMIKVIAEFFTVSVDYL 64 Query: 81 LK 82 L+ Sbjct: 65 LQ 66 >gi|288916300|ref|ZP_06410679.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288352279|gb|EFC86477.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 393 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 +R+ +TQ+E+ R+G + I LE G+ + + + LA LD L Sbjct: 4 VGTRLAQVRRRRNMTQEELAERSGVSADVIRRLEQGRRSGAQLRTLGALARALDVRTSDL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|251781701|ref|YP_002996003.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390330|dbj|BAH80789.1| transcriptional regulator, Cro/CI family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411061|gb|EFY01969.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126498|gb|ADX23795.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 68 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+ + + G ++ I+ +E G I+ I + LD L L Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|255505869|ref|ZP_05348580.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265478|gb|EET58683.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ L Q E+ + + ++S +E S +I+ ++ LA LDT + L Sbjct: 38 GRRIARRRKQLGLKQAEVEEKADLSYKYLSNIERSISIPSIEVIMRLAVALDTTPDEFL 96 >gi|170697860|ref|ZP_02888945.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171317970|ref|ZP_02907144.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064453|ref|YP_001812104.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170137247|gb|EDT05490.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171096870|gb|EDT41744.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996970|gb|ACB67888.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 180 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLF 60 >gi|94995138|ref|YP_603236.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548646|gb|ABF38692.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] Length = 68 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+ + + G ++ I+ +E G I+ I + LD L L Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 66 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77 + +R+E K++Q+E+ N++G +++ IS +ET KS T+ + + LA LD P+ Sbjct: 6 IQRLREEKKMSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPI 58 >gi|71904298|ref|YP_281101.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803393|gb|AAX72746.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] Length = 68 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+ + + G ++ I+ +E G I+ I + LD L L Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|317504406|ref|ZP_07962388.1| XRE family transcriptional regulator [Prevotella salivae DSM 15606] gi|315664478|gb|EFV04163.1| XRE family transcriptional regulator [Prevotella salivae DSM 15606] Length = 103 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RK KLTQ+++ G + +IS++E G S + + + +A+ L Sbjct: 43 YAELLKTQRKMQKLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALG 95 >gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 209 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +DA + ER+ R +R T + R G ++S IS +E G ++ + LA Sbjct: 11 DTDAGVNERI--ARRVRELRATRGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLA 68 Query: 71 HTLDTPLWKLL 81 L L L Sbjct: 69 AGLGVSLASLF 79 >gi|294794380|ref|ZP_06759516.1| DNA-binding protein [Veillonella sp. 3_1_44] gi|294454710|gb|EFG23083.1| DNA-binding protein [Veillonella sp. 3_1_44] Length = 127 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWK 79 + IR ++Q+E+ G ++S++S+LE G S ++++ + +A + + Sbjct: 28 LGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQINVGQ 87 Query: 80 LLK 82 L++ Sbjct: 88 LVR 90 >gi|302555539|ref|ZP_07307881.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302473157|gb|EFL36250.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++A LT + G + + +S LETG+ ++ ++ LA T + +LL Sbjct: 41 VAPRLRALRRQASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYSTTVSELL 100 >gi|254420279|ref|ZP_05034003.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196186456|gb|EDX81432.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 371 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R + +++ R + +I +LETG + + + M LA L L Sbjct: 9 GEQLRLARLAHGYSLEDVGERISATRQFIHQLETGSRSPSDEVMEALADVLGVTPAFL 66 >gi|217977134|ref|YP_002361281.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217502510|gb|ACK49919.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 205 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK + E+ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 23 LGKTVQRLRKAYNFSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 82 Query: 82 K 82 + Sbjct: 83 Q 83 >gi|168998508|ref|YP_001687776.1| putative regulatory protein [Staphylococcus aureus] Length = 113 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|163746251|ref|ZP_02153609.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380136|gb|EDQ04547.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 207 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T ++ + G A+S +S++E G + D + LA L+ + +L Sbjct: 27 LGARVRELRKARNWTLEQAARQAGLARSTLSKIENGLMSPTYDALKKLAVGLEITVPQLF 86 Query: 82 KP 83 P Sbjct: 87 TP 88 >gi|21230716|ref|NP_636633.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992439|ref|YP_001904449.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|21112308|gb|AAM40557.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734199|emb|CAP52407.1| transcriptional regulator [Xanthomonas campestris pv. campestris] Length = 460 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R + +R+ LTQ E+ R G + S+++++E + + + L Sbjct: 1 MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK 60 Query: 71 HTLD 74 L Sbjct: 61 TALG 64 >gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus] gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus] gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus] gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus] gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus] gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus] gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus] gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus] gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp. aureus JKD6159] gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] Length = 113 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti 1021] gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti] gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021] gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 182 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R KL+Q+E+ R G S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|323693267|ref|ZP_08107485.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14673] gi|323502750|gb|EGB18594.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14673] Length = 115 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E KLT +E+ ++G + +I E+E + +++ + L L Sbjct: 12 GFRLKQARTEQKLTYEELAEKSGVSSRYIKEIENHGNVPSLEKLGQLIRALHISADPFFY 71 Query: 83 P 83 P Sbjct: 72 P 72 >gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium resistens DSM 45100] Length = 497 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 26/54 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +RK+ L+Q ++ + G + S+++++E + + + L T Sbjct: 8 VGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHNSRPLTLAVLDKLTATFGV 61 >gi|296450740|ref|ZP_06892493.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296260584|gb|EFH07426.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 76 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++IR E L Q+++ TG I +E G+ +++ I LAH L+ + ++ K Sbjct: 7 LKDIRIERNLIQEDLAEATGSCSRTIGRIERGERNPSLEMAIRLAHYLNMSVEEIFK 63 >gi|284993364|ref|YP_003411919.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066610|gb|ADB77548.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 275 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 34/79 (43%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP + R F R R +L+Q ++ + + IS LETG+S Sbjct: 1 MPGGGAARSVRTVTATATRSTFGPLLRQWRTRRRLSQLDLAVESDVSARHISFLETGRSQ 60 Query: 61 INIDNMIILAHTLDTPLWK 79 + + ++ LA LD PL + Sbjct: 61 PSREMVLRLATQLDVPLRE 79 >gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R RK+ ++Q E+ + G Q + + E+GKS+ + + LA LDT Sbjct: 1 MSFPELLRQCRKQKHMSQAELASLLGVTQQAVGKWESGKSSPDPTTVAKLAEILDTTADY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257063263|ref|YP_003142935.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790916|gb|ACV21586.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 68 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ N + IR E KL+Q ++ G +++ IS +ETG+ ++L LD Sbjct: 3 DKLVLKNRLKEIRAEQKLSQAQLAAMVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 + Sbjct: 63 EDIF 66 >gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 112 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRKE ++ E+ + +Q +S E G + I+ID + L+ LD P +++K Sbjct: 26 IRKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDCPFERVIK 82 >gi|221197606|ref|ZP_03570653.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M] gi|221204279|ref|ZP_03577297.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2] gi|221176445|gb|EEE08874.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2] gi|221184160|gb|EEE16560.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M] Length = 203 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|125623537|ref|YP_001032020.1| hypothetical protein llmg_0681 [Lactococcus lactis subsp. cremoris MG1363] gi|124492345|emb|CAL97283.1| putative membrane protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070296|gb|ADJ59696.1| hypothetical protein LLNZ_03535 [Lactococcus lactis subsp. cremoris NZ9000] Length = 161 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK+ TQ+ + + I +E G + +++D + +++ L P+ +L + Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61 >gi|161521857|ref|YP_001585284.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351982|ref|YP_001947609.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345907|gb|ABX18992.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189336004|dbj|BAG45073.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 203 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|115359639|ref|YP_776777.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284927|gb|ABI90443.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 180 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + + TG +S++S++E G S +I + L+ L+ + +L Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLF 60 >gi|152988924|ref|YP_001351041.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964082|gb|ABR86107.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 199 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR P +D E R +RK LT + ++ +IS+LE + Sbjct: 1 MPR--PSTPDATDTPRSETHFLGTRIRGLRKRRGLTLAALAAQSELTAGYISQLERNLAY 58 Query: 61 INIDNMIILAHTLDT 75 +I + +A +L Sbjct: 59 PSIPALFNIARSLGV 73 >gi|313247825|ref|YP_004032987.1| DNA-binding protein [Enterococcus faecalis] gi|312836992|dbj|BAJ34878.1| DNA-binding protein [Enterococcus faecalis] Length = 204 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LTQ+++ + +++ IS+ E+GK NI+++ ++ + +LL Sbjct: 3 FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELL 62 >gi|258516790|ref|YP_003193012.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780495|gb|ACV64389.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 66 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R IR+ +TQ E+ N TG+ QS IS++E+G + + A L + +L Sbjct: 1 MIGNKIRIIRESKHMTQDELGNLTGYKQSQISKIESGSREVKSRELGKFAAALGVKITEL 60 Query: 81 LK 82 L+ Sbjct: 61 LE 62 >gi|269836649|ref|YP_003318877.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269785912|gb|ACZ38055.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 125 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R +R + +++ +G + ++SE+E G+ + + LA LD L Sbjct: 9 REAVGATIRGLRLTRGWSLRDLSQASGISVPYLSEIERGRKDPSGAVLAQLAEALDLSLG 68 Query: 79 KLL 81 LL Sbjct: 69 ALL 71 >gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R + ++T + TG ++S +S LETG+ +++ ++ LA + PL Sbjct: 13 EQVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQRKASLELLLPLAMAYNVPLDD 72 Query: 80 LL 81 L+ Sbjct: 73 LV 74 >gi|227518256|ref|ZP_03948305.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554727|ref|ZP_03984774.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256963254|ref|ZP_05567425.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257088722|ref|ZP_05583083.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|307270406|ref|ZP_07551709.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307287459|ref|ZP_07567511.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|312905012|ref|ZP_07764144.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227074295|gb|EEI12258.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176142|gb|EEI57114.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256953750|gb|EEU70382.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256997534|gb|EEU84054.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|306501505|gb|EFM70804.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306513253|gb|EFM81882.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631673|gb|EFQ14956.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 204 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LTQ+++ + +++ IS+ E+GK NI+++ ++ + +LL Sbjct: 3 FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELL 62 >gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 189 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + R +RK++ LTQ E +TG +S + E+GK N + +A Sbjct: 1 MVFADRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVARFYHVSTDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|160915619|ref|ZP_02077827.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|331082745|ref|ZP_08331868.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] gi|158432095|gb|EDP10384.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|330400364|gb|EGG80006.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] Length = 204 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LTQ+++ + +++ IS+ E+GK NI+++ ++ + +LL Sbjct: 3 FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELL 62 >gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E +L+ E+ + G + +S++E G S++ + + LA LD L+ Sbjct: 44 VGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 103 >gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 101 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + +RKE LTQ+++ + G A + I+ +ETG I+ID I L Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIEL 85 >gi|315038300|ref|YP_004031868.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276433|gb|ADQ59073.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 112 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ +TQ E+ +++G ++ ++++E G ++ D + +A L+ LL Sbjct: 7 LAQKIINYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLL 66 >gi|261406993|ref|YP_003243234.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283456|gb|ACX65427.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 186 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RKE ++ ++ TG ++ + +E G++ + + ++ + PL+ L K Sbjct: 18 LKKYRKEKNMSLDDLAEITGVSKLTLGNIERGETNPTLAIIWKISKGISLPLFALFK 74 >gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 101 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + +RKE LTQ+++ + G A + I+ +ETG I+ID I L Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIEL 85 >gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 70 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+IR+E L+Q E+ G ++ I+ +ET K +++ + +AH + +L K Sbjct: 5 NRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYNPSLELALRIAHYFKLSVEELFK 63 >gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 182 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RKE L+Q+E+ R G S IS +E + ++ ++ + L L + Sbjct: 4 GASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVEFF 62 >gi|167628192|ref|YP_001678691.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167590932|gb|ABZ82680.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 193 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F R +RK KL+Q E+ G ++ IS E T ID + ++A + Sbjct: 2 RECFSERLRGLRKGRKLSQNELGAALGLSRGSISYYEKQSRTAPIDVLYVVADYFNVSAD 61 Query: 79 KLL 81 LL Sbjct: 62 FLL 64 >gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 174 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTL 73 LR ++ + + +R E LTQKE+ R G ++I ++E G+ ++ ++ ++ L Sbjct: 25 LRLKLEIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEAL 84 Query: 74 DTPLWKLLK 82 P+ + Sbjct: 85 SVPVASFFQ 93 >gi|46206109|ref|ZP_00210190.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R T + R + S +S +ETG I +D ++ +A L T L +L++P Sbjct: 13 QRIRGLRLARGWTLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVEP 72 >gi|330718468|ref|ZP_08313068.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 260 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R E LTQ+E+ ++ +S ETGK+ +++ + L+ + +++ Sbjct: 3 FEQDIKRMRLEKGLTQQELAESIHVSRQTVSTWETGKNYPSLEVLRSLSLLFNVSFEQII 62 >gi|325923488|ref|ZP_08185143.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325546055|gb|EGD17254.1| putative transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 96 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + N G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRTERGIAQETLANLAGIERSHMGKIERGEHAPTLAVIFKIAGALECSTAVLM 84 >gi|257897454|ref|ZP_05677107.1| predicted protein [Enterococcus faecium Com12] gi|293377213|ref|ZP_06623419.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|257834019|gb|EEV60440.1| predicted protein [Enterococcus faecium Com12] gi|292644162|gb|EFF62266.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 82 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M+ + R+ ++Q E+ GF Q+ IS +ETGK N+ +I L+ L L Sbjct: 20 MVLGARIAHAREGLGISQGELGKLAGFNQTTISLIETGKRLPNLKTLIRLSKILKKSL 77 >gi|229493241|ref|ZP_04387033.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229319972|gb|EEN85801.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 268 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M + + R+ +LTQ + G + +S +ETG+S + D ++ L+ LD PL Sbjct: 4 ETMDVGSELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 Query: 78 WK 79 + Sbjct: 64 RQ 65 >gi|221210520|ref|ZP_03583500.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] gi|221169476|gb|EEE01943.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] Length = 203 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|149187584|ref|ZP_01865881.1| predicted transcriptional regulator [Vibrio shilonii AK1] gi|148838464|gb|EDL55404.1| predicted transcriptional regulator [Vibrio shilonii AK1] Length = 206 Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + LT +E RTG A+S +S++E + + M LA L + Sbjct: 23 EPLKLGERIKDIRAKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLHIDM 82 Query: 78 WKLLKP 83 +L +P Sbjct: 83 PQLFEP 88 >gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 113 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R +AKLTQ +I + G +Q + E G DN++ L++ + + LL Sbjct: 3 FTERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKKPTQDNLVKLSNIFNVSVDSLL 62 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R AK++Q E+ G Q+ +S +E G++ + I N+I L L+ P+ Sbjct: 12 LIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKLHQILECPISSF 71 Query: 81 L 81 Sbjct: 72 F 72 >gi|281334739|gb|ADA61823.1| hypothetical protein SAP047A_004 [Staphylococcus aureus] Length = 113 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEAIKEQRELKGWSQEELANILKVSRQNVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N RN R L++KE+ + +Q +S E G ST++I N++IL + L+ P + Sbjct: 8 GNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIPFDE 64 >gi|210623409|ref|ZP_03293788.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM 13275] gi|210153604|gb|EEA84610.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM 13275] Length = 77 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ++ +I N + R E L+Q E+ G +++ IS +ETG+ +IL Sbjct: 2 KKNMKNDLILKNRLKVARAEKSLSQSELAEMIGVSRNTISSIETGQFNPTAKLALILCIA 61 Query: 73 LDTPLWKLL 81 LD +L Sbjct: 62 LDKKFEELF 70 >gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 198 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +T + TG + S +S LE+G+ N++ ++ LA PL +L+ Sbjct: 12 VGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQRRPNLELLLPLAQAHQVPLDELV 71 >gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] Length = 124 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+E+ + + + + E G + + + L+ L L+ Sbjct: 7 LGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDSLM 66 >gi|313884783|ref|ZP_07818537.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619982|gb|EFR31417.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 188 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +N + IR E ++Q+++ + IS+ E G + + + + IL + + Sbjct: 1 MFKDNLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAEPSFEKLAILVDYFNLSYDDI 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|302385374|ref|YP_003821196.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196002|gb|ADL03573.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 184 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R + K++ +G ++S + ++E G+ I + +A+ P +L Sbjct: 7 IVAENIKRLRTQRKMSLDAAAKASGVSKSMLGQIERGEVNPTIAMVWKIAYGFKVPFTEL 66 Query: 81 L 81 + Sbjct: 67 V 67 >gi|241759657|ref|ZP_04757758.1| Helix-turn-helix [Neisseria flavescens SK114] gi|241320029|gb|EER56410.1| Helix-turn-helix [Neisseria flavescens SK114] Length = 95 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + T+ ++ +G + S+++ LE GK N+ + + L P L+ Sbjct: 4 GRAIKLCRNQKGFTKTKLAENSGLSVSYLTLLEQGKRDPNLSTLEKICLALQIPSTVLM 62 >gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis str. MC2 155] gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium smegmatis str. MC2 155] Length = 142 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A+++ +++ + G + ++S++E G + D + +A L L Sbjct: 19 GSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVL 76 >gi|66769288|ref|YP_244050.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66574620|gb|AAY50030.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 460 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R + +R+ LTQ E+ R G + S+++++E + + + L Sbjct: 1 MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK 60 Query: 71 HTLD 74 L Sbjct: 61 TALG 64 >gi|16126237|ref|NP_420801.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235010|ref|YP_002517446.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13423463|gb|AAK23969.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964182|gb|ACL95538.1| transcriptional regulator [Caulobacter crescentus NA1000] Length = 199 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E L+ TG +++ IS +E G+++ + + L + + +LL Sbjct: 17 RLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGRLCNAYGLTMSRLL 73 >gi|297184582|gb|ADI20694.1| predicted transcriptional regulators [uncultured alpha proteobacterium EF100_94H03] Length = 204 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R P + N R +R E + E +T ++S + ++E + + D Sbjct: 11 RASPADEVPQPP--LDLGNRIRELRSEHGWSLDEAAAQTSLSRSSLFKIEKNRMSPTFDA 68 Query: 66 MIILAHTLDTPLWKLL 81 + LA + +L+ Sbjct: 69 LRKLAEGFGLAMAELV 84 >gi|296446681|ref|ZP_06888621.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296255802|gb|EFH02889.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 75 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R K TQ+ + + + ++ +E + + + +A + Sbjct: 5 EVIATNVRRLRNARKWTQEALAEKAQLSSRYVGAIERANVSARVKVIGRIADAFGVEPAE 64 Query: 80 LLK 82 LLK Sbjct: 65 LLK 67 >gi|270290740|ref|ZP_06196964.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] gi|270280800|gb|EFA26634.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] Length = 108 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ RK TQ ++ NR ++ +S E G S +++ ++ + + LDT LL Sbjct: 13 FNTRLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKICNILDTSADYLL 72 >gi|317054347|ref|YP_004118372.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952342|gb|ADU71816.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 200 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RKE KL+ E+ R G ++ + E+E G + +I + +A L + ++ Sbjct: 22 VSSRVRTQRKEQKLSLDELARRAGVSKGMLVEVEKGDANPSIAILCKIAAALGLSVADMV 81 >gi|251779839|ref|ZP_04822759.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084154|gb|EES50044.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 167 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 N + +R+ +++ E+ + + ++I+ LE G K+ +++ + ++ LD PL KL+ Sbjct: 5 GNKIKTLRESKNISKSELARKIEVSPAYITMLENGTKTNPSLEILNKISFALDIPLDKLV 64 >gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 102 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I + + +R+E LT E+ +Q S E G + I+ID+++++A L Sbjct: 9 KIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVS 65 >gi|124007647|ref|ZP_01692351.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123986945|gb|EAY26710.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 275 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M F N R IR+E K+TQ + G ++S +S E G++ I +I +A + Sbjct: 1 MFFSKNLRYIREEKYKITQGALAEILGVSRSALSAYEDGRAEPRILLLIKIAQYFAVSID 60 Query: 79 KLL 81 +++ Sbjct: 61 EMV 63 >gi|146313164|ref|YP_001178238.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320040|gb|ABP62187.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 200 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ RK+ KL+ E+ R ++ + E+E G + +I + LA L + ++ Sbjct: 22 VASRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81 >gi|118497388|ref|YP_898438.1| transcriptional regulator [Francisella tularensis subsp. novicida U112] gi|195536079|ref|ZP_03079086.1| helix-turn-helix protein, putative [Francisella tularensis subsp. novicida FTE] gi|208779183|ref|ZP_03246529.1| helix-turn-helix DNA binding protein [Francisella novicida FTG] gi|118423294|gb|ABK89684.1| transcriptional regulator [Francisella novicida U112] gi|194372556|gb|EDX27267.1| helix-turn-helix protein, putative [Francisella tularensis subsp. novicida FTE] gi|208744983|gb|EDZ91281.1| helix-turn-helix DNA binding protein [Francisella novicida FTG] Length = 70 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ LTQ ++ +G +I E+E GKST +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLAGISGLGTRFIGEVENGKSTAHIGKVIQLASSLG 63 >gi|186475018|ref|YP_001856488.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191477|gb|ACC69442.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 135 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + I IR A + Q ++ G S S +E G+S+++ D + + A Sbjct: 5 KTVTTYGAILGAVLGQIRSAAGMKQSDLAEAVGVGPSTWSRIEKGESSLSTDQLKLAADA 64 Query: 73 LDTPLWKLLK 82 L P ++L+ Sbjct: 65 LKVPPSRILE 74 >gi|88802552|ref|ZP_01118079.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P] gi|88781410|gb|EAR12588.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P] Length = 297 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +IF RK LTQ E+ + I +E+G+ T + I++ L+ Sbjct: 2 DTLIFGKELIKARKARGLTQAEVAEKCNVTIRTIQRIESGEVTPRSSTIKIISKFLEVDF 61 Query: 78 WKL 80 +++ Sbjct: 62 FEI 64 >gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 252 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 R+ FR IRK+ L+Q+E + G Q+ S +E G+ + ++ + L Sbjct: 11 RVEIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSGL 61 >gi|296161883|ref|ZP_06844684.1| helix-turn-helix domain protein [Burkholderia sp. Ch1-1] gi|295887902|gb|EFG67719.1| helix-turn-helix domain protein [Burkholderia sp. Ch1-1] Length = 79 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK KLTQ + R + IS +E K+ ID +I +A L L + Sbjct: 8 KAVGKEIRARRKVKKLTQAGLAMRAAVHPNTISLIERAKTIAGIDALIDIADALGVSLSQ 67 Query: 80 LLK 82 L+K Sbjct: 68 LIK 70 >gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7] gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7] Length = 297 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +M +N R +RK+ +Q+++ R ++ +S+ E+ ++++IIL+ + + Sbjct: 6 KMSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTID 65 Query: 79 KLLK 82 LLK Sbjct: 66 DLLK 69 >gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 115 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + N +N RK LTQ+++ +RTG ++ I E + +++++ +LA +T + Sbjct: 2 KTTVGQNIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSID 61 Query: 79 KLL 81 +LL Sbjct: 62 RLL 64 >gi|269798723|ref|YP_003312623.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095352|gb|ACZ25343.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 127 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWK 79 + IR ++Q+E+ G ++S++S+LE G S ++++ + +A + + Sbjct: 28 LGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQINVGQ 87 Query: 80 LLK 82 L++ Sbjct: 88 LVR 90 >gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC 25827] Length = 186 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+++ L+ E+ + G A+S +S+LE G +I+ + + LD P + Sbjct: 9 ELIAKALVRERQKSGLSLSELSRQAGIAKSTLSQLEAGNGNPSIETLWAICVALDVPFSR 68 Query: 80 LLK 82 L++ Sbjct: 69 LIE 71 >gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] Length = 76 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + RKE LT +E+ G +Q IS E+G + INID + L+ P+ Sbjct: 13 IVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPIQVF 72 Query: 81 L 81 L Sbjct: 73 L 73 >gi|111021088|ref|YP_704060.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820618|gb|ABG95902.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 207 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ T ++ TG + S +S LE+G+ ++ M++LA PL +L+ Sbjct: 18 VGPRLKALRQQRGATLAQLSESTGISVSTLSRLESGQRKPTLELMLLLARAHQLPLDELV 77 >gi|312866305|ref|ZP_07726523.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311097999|gb|EFQ56225.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 68 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER+I N + RKE KL+Q + G +++ IS +ETG+ + ++ LD Sbjct: 3 ERLILKNRLKEARKEEKLSQGALAKLVGVSRNTISSIETGQYSPTAKLAPVICIALDKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564] gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564] Length = 113 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+A+LTQ ++ + G +Q + E G +N++ +A L+ + L+ Sbjct: 3 FSERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKKPTQENLVKIAQILNVSVDYLV 62 >gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 191 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R+E T ++ TG + S +S LE G+ ++ ++ LA L + Sbjct: 9 EAVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQRRPTLELLLPLARAHQVQLDE 68 Query: 80 LL 81 L+ Sbjct: 69 LV 70 >gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] Length = 323 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +M F N + +R++ TQ++I + ++ +S+ E+G S +D ++ L+ + Sbjct: 6 KMGFAENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGSFPEMDKLLQLSEMFQCGMD 65 Query: 79 KLLK 82 L++ Sbjct: 66 VLVQ 69 >gi|254386728|ref|ZP_05002021.1| regulatory protein [Streptomyces sp. Mg1] gi|194345566|gb|EDX26532.1| regulatory protein [Streptomyces sp. Mg1] Length = 197 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ A LT + R + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 4 VAPQLRDLRRRAGLTLEAAATRARLSPAHLSRLETGRRQPSLPLLLGLARTYGTTVSELL 63 >gi|182625421|ref|ZP_02953194.1| conserved domain protein [Clostridium perfringens D str. JGS1721] gi|177909418|gb|EDT71870.1| conserved domain protein [Clostridium perfringens D str. JGS1721] Length = 64 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 N + R LTQKE+ ++ G + +S +E G I + M+ LA LDT + +L Sbjct: 2 NIKLKRISMGLTQKELAHKVGISHVTLSRIEKGAYENITLRTMLKLAEALDTTVQELF 59 >gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii] Length = 136 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTL 73 +R F R R TQKE+ + +G QS I E+G+ T +I LA L Sbjct: 3 TIRRMETFGQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRTEPTSAALIKLAQAL 62 Query: 74 DTPLWKL 80 D L Sbjct: 63 DVTPEWL 69 >gi|160947469|ref|ZP_02094636.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] gi|158446603|gb|EDP23598.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] Length = 200 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R K TQKE G Q +S E GK+ ID +I +A L Sbjct: 4 KTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCKVSLDW 63 Query: 80 L 80 L Sbjct: 64 L 64 >gi|119963185|ref|YP_949637.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119950044|gb|ABM08955.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 206 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+ T ++ G ++ I +E G + ++ ++ ++ L L L++ Sbjct: 19 GARVRQERQNRGWTLDQLAEAAGVSRRMIINMEQGAANPSVGTLLRISDALGVGLPALVE 78 >gi|307701893|ref|ZP_07638902.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] gi|307616708|gb|EFN95896.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] Length = 158 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ E G +++ +S E G S ++ + + I+ + + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFAQIIGISRNSLSRYENGTSPVSTELIDIICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|295700360|ref|YP_003608253.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439573|gb|ADG18742.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 195 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R + + R+ ++S IS +E G+S+ + LA L+ PL L Sbjct: 6 LIARRVKALRDAQNWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASL 65 Query: 81 LK 82 + Sbjct: 66 FE 67 >gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 133 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRK-EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +RK EA LTQ+ + + G A++ ++ E GK +++ + +A Sbjct: 14 MFAERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDY 73 Query: 80 LL 81 LL Sbjct: 74 LL 75 >gi|226526965|ref|YP_002790984.1| transcriptional regulator [Lactobacillus brevis] gi|226442557|dbj|BAH56427.1| transcriptional regulator [Lactobacillus brevis] Length = 210 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R LTQ E+ + ++ IS E +S + ++I L+ P+ LL+ Sbjct: 5 QKLKQCRSAKNLTQAEVAEQLHVSRKTISGWENERSYPDPTSLIKLSDLYHVPIDDLLR 63 >gi|189465130|ref|ZP_03013915.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|218131566|ref|ZP_03460370.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] gi|189437404|gb|EDV06389.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|217986235|gb|EEC52573.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] Length = 117 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + IR+ + TQ++I G +S S E G + D + L++ + Sbjct: 6 QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSNLFGCEPFI 65 Query: 80 LLK 82 L + Sbjct: 66 LFE 68 >gi|163798150|ref|ZP_02192086.1| transcriptional regulator, XRE family with cupin sensor [alpha proteobacterium BAL199] gi|159176593|gb|EDP61171.1| transcriptional regulator, XRE family with cupin sensor [alpha proteobacterium BAL199] Length = 201 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +RK T + R G + S +S +E G+ + + +A L + + +L++ Sbjct: 23 GNRVRTLRKARGNTLATLAARAGLSVSMLSAVERGEKAATVLVLHRIAGALGSTIARLVE 82 >gi|152987325|ref|YP_001348762.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962483|gb|ABR84508.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 183 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R E +LT ++ R+ +++ IS +E +S+ + LA L L + Sbjct: 5 ELIARRLSTLRSERRLTLAQLAERSAVSKAMISRIERNESSPTASVLGRLAGGLGVTLSE 64 Query: 80 LL 81 LL Sbjct: 65 LL 66 >gi|330825526|ref|YP_004388829.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329310898|gb|AEB85313.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 96 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + ++ G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLM 84 >gi|330467327|ref|YP_004405070.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328810298|gb|AEB44470.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] Length = 363 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 29/63 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R ++Q+++ G ++ ++++E G ++ + L+ L + L Sbjct: 9 LVGEQVRQARLSLGISQQDLATMVGLDRTMLAKVEAGSRRLDALELAKLSRALKVSMEYL 68 Query: 81 LKP 83 ++P Sbjct: 69 IQP 71 >gi|332654831|ref|ZP_08420573.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332516174|gb|EGJ45782.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 68 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ N + R E L+Q ++ G ++ IS +ETG+ ++L LD Sbjct: 3 DQLVLKNRLKVARAEKNLSQGDLAKLVGVSRQTISSIETGQFNPTAKLALVLCIALDKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|255527402|ref|ZP_05394276.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296184943|ref|ZP_06853354.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255508893|gb|EET85259.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050725|gb|EFG90148.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 176 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R+E TQK + + +Q IS +ET + +I +N+ + + L+ P+ + Sbjct: 1 MIGNAIKEAREEKGFTQKYLGEASCLSQKTISAIETCRRSITQENLKNICNELNNPIVYM 60 >gi|256370857|ref|YP_003108681.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007441|gb|ACU53008.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 169 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW-KL 80 R R+ A LTQ E+ R G QS +S E+G ++ + L L +L Sbjct: 4 VGEVLREARRRAGLTQAELGRRAGVTQSVVSAYESGARQPSVSMLARLVAAAGAELRMEL 63 Query: 81 LKP 83 +P Sbjct: 64 SEP 66 >gi|297201083|ref|ZP_06918480.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|197712131|gb|EDY56165.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 448 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +R E LTQK++ + ++IS LE+G+ + D + LA L +L Sbjct: 9 IIGRRVQQLRVERGLTQKQLAEPA-YTPAYISTLESGRVRPSDDALRHLADRLGVGFEEL 67 >gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni ACN14a] Length = 328 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 28/55 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ A+++ +++ + G + ++S++E G + + + +A L L Sbjct: 13 IRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67 >gi|94972375|ref|YP_595594.1| PbsX family transcriptional regulator [Lawsonia intracellularis PHE/MN1-00] gi|94731912|emb|CAJ53901.1| transcriptional regulator, PbsX family [Lawsonia intracellularis PHE/MN1-00] Length = 93 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN RK AKLTQ + + G ++I E+E G+ +++ ++ + + +LL Sbjct: 13 IRNYRKTAKLTQARLGEKLGVKGNYIGEIERGEEHPSVEMLVKFSLHMKVRPGELL 68 >gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 190 Score = 50.4 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++A L+Q+ + +TG S IS +E+GK ++ + + + L Sbjct: 13 LGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLSDFF 72 >gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 258 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +++R KL+Q+ + +S I E +S+ I+ +I + P+ LL+ Sbjct: 6 KNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRSSPTIEFLIAFSDYFKIPIDILLR 64 >gi|300743994|ref|ZP_07073014.1| putative Helix-turn-helix domain protein [Rothia dentocariosa M567] gi|311113246|ref|YP_003984468.1| transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|300380355|gb|EFJ76918.1| putative Helix-turn-helix domain protein [Rothia dentocariosa M567] gi|310944740|gb|ADP41034.1| transcriptional regulator [Rothia dentocariosa ATCC 17931] Length = 135 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 33/69 (47%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + R R++R+ T +E+ + ++SE+E G+ + + + + L Sbjct: 32 KTVPLRQAIGEVLRDVRQRQGRTLREVSQSARVSLGYLSEVERGQKEASSELLAWICQAL 91 Query: 74 DTPLWKLLK 82 D P++++L+ Sbjct: 92 DIPMYQMLR 100 >gi|282854487|ref|ZP_06263823.1| cupin domain protein [Propionibacterium acnes J139] gi|282582348|gb|EFB87729.1| cupin domain protein [Propionibacterium acnes J139] Length = 258 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + ++ + R + T ++ G ++ + +E G Sbjct: 55 LPTKCSIMHYMDTGAEPLAHAIGARVKQQRMARRWTLDQLARYAGVSRRVLVNVEQGAVN 114 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + ++ L+ L L L++P Sbjct: 115 PRVGTLLRLSDALGVGLPALVEP 137 >gi|271969826|ref|YP_003344022.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513001|gb|ACZ91279.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 118 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 4/83 (4%) Query: 2 PRRKRDEPHLSDAILRE----RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P R + + R R +R E E R G + ++SE+E G Sbjct: 7 PLRPATDRTDPKSSPAREPLWRHALGERLRGLRHERGEKLSETARRAGVSPQYLSEMERG 66 Query: 58 KSTINIDNMIILAHTLDTPLWKL 80 + + + +A LD L L Sbjct: 67 VKEPSSEMIAAVAGALDVTLVDL 89 >gi|254284170|ref|ZP_04959138.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] gi|219680373|gb|EED36722.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] Length = 211 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 31/68 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 AI + +R+ T ++ + +G ++S +S++E GK+ + +A + Sbjct: 26 AIDPAALRLGQRVVEMRQNNGQTLDQLASASGVSRSMLSQIERGKANPTLAVTYRIAQSF 85 Query: 74 DTPLWKLL 81 + +++ Sbjct: 86 GLSIGEMV 93 >gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5] gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771] Length = 182 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] Length = 181 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +R+E LT +E+ + +G S++S LE K I++ N+ LA + Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 80 LLK 82 + Sbjct: 61 FFE 63 >gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 101 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + +RKE LTQ+++ + G A + I+ +ETG I+ID I L Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIEL 85 >gi|307701699|ref|ZP_07638715.1| toxin-antitoxin system, antitoxin component, Xre family [Mobiluncus mulieris FB024-16] gi|307613202|gb|EFN92455.1| toxin-antitoxin system, antitoxin component, Xre family [Mobiluncus mulieris FB024-16] Length = 96 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R E R ++ R A LTQ E+ R G Q++IS LE+G++ Sbjct: 15 MSPEQRREYEAQTPRSRAALLAAEIAYEARMSAGLTQAELGERLGRKQTYISALESGRAN 74 Query: 61 INIDNMIILAHTLDTPL 77 I + L L Sbjct: 75 PTIATLEELVDATGKRL 91 >gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 206 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N RK ++ +E+ NR G + I ETG+ I D ++ +A LD Sbjct: 6 KIIGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIADALDIDPAD 65 Query: 80 L 80 L Sbjct: 66 L 66 >gi|316935911|ref|YP_004110893.1| XRE family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603625|gb|ADU46160.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris DX-1] Length = 480 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q +I G + S+++ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] Length = 509 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119] Length = 200 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +NIRK +TQ ++ +TGF+Q+ IS E G+ +I + A L+ Sbjct: 13 IKNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSIGEKEVEKYAKALEV 62 >gi|311747894|ref|ZP_07721679.1| transcriptional regulator [Algoriphagus sp. PR1] gi|126575888|gb|EAZ80198.1| transcriptional regulator [Algoriphagus sp. PR1] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +RK+ LTQ+ + + G ++S ++ E+ +D ++ L+ L L LL+ Sbjct: 6 NIKFLRKQKNLTQEIMASTIGISRSKLAGYES-SVNPPLDTLVKLSDALGVSLDILLR 62 >gi|118464880|ref|YP_881421.1| regulatory protein [Mycobacterium avium 104] gi|118166167|gb|ABK67064.1| regulatory protein [Mycobacterium avium 104] Length = 189 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 LT +E+ R G S +S LE+GK + +D++ LA L +LL+P Sbjct: 23 GLTLQEVGARAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 72 >gi|325282101|ref|YP_004254643.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313910|gb|ADY34463.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 110 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 RD + +N R + LTQ+E+ R G +S I +LE G +I + Sbjct: 25 RDAMEEQLKEEVQAYFVGEAIKNARLKQHLTQEELGERIGVKRSQICKLENGNCSITLST 84 Query: 66 MIILAHTLDT 75 M + L Sbjct: 85 MRRVFKALGI 94 >gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 509 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|296446438|ref|ZP_06888382.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296256073|gb|EFH03156.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 205 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+ E+ ++G A+S IS++E ++ + + L+ LD + ++L Sbjct: 23 LGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 82 Query: 82 K 82 + Sbjct: 83 Q 83 >gi|254555732|ref|YP_003062149.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] gi|254044659|gb|ACT61452.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] Length = 221 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LTQ+ + ++ + +S E G + N+D ++ L+ L L KLL Sbjct: 3 LGQALKLQREALGLTQQVLADQLHVTRQTVSRWENGSTYPNLDTLVELSDRLQISLDKLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I VN +RK+ LTQ + G +Q IS+ E G I D ++ L+ P+ Sbjct: 5 RCILVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPID 64 Query: 79 KLLK 82 +L+ Sbjct: 65 YILR 68 >gi|111038055|ref|YP_709142.1| conjugal transfer protein TrbA [IncP-1 plasmid pKJK5] gi|110781060|emb|CAK02644.1| transcriptional regulator protein [IncP-1 plasmid pKJK5] Length = 124 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ++IF N I E +T+ E+ R+G + S++S+L TGK+ ++ M +A Sbjct: 3 KVIFFTNVLRILDERGMTKNELSERSGVSISFLSDLTTGKANPSLKVMEAIASA 56 >gi|53721415|ref|YP_110400.1| DNA-binding regulatory protein [Burkholderia pseudomallei K96243] gi|52211829|emb|CAH37828.1| putative DNA-binding regulatory protein [Burkholderia pseudomallei K96243] Length = 81 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE ++Q+ + + +S + ++E G+ + N++ +A L +LL Sbjct: 17 LGAAIRARRKELVMSQEALADFAEIDRSHMGKIERGERNVTFMNIVRIARALQLLPSELL 76 Query: 82 K 82 + Sbjct: 77 R 77 >gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] Length = 509 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|316932003|ref|YP_004106985.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599717|gb|ADU42252.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 104 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R R+ +L+Q E+ G S I+ E G+ + DN+ LA L LL Sbjct: 10 FASRLRKTRETRELSQSELAREAGMQPSAIAHFEAGRRKPSFDNVRALAKALKVSADYLL 69 >gi|300855029|ref|YP_003780013.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435144|gb|ADK14911.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RKE K+TQ+E+ + + I LE GK +I +A + + ++ Sbjct: 8 NKIRELRKERKITQEELADFCNVTRQTIISLENGKYNPSIFLAYKIAKIFNMTIEQVF 65 >gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 251 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQK++ + G + +S ETGK + M L LD + +LL Sbjct: 8 GSFISEMRKEKGLTQKQLADLVGVSDKAVSRWETGKGLPDTSIMPELCKALDININELL 66 >gi|293395281|ref|ZP_06639566.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422238|gb|EFE95482.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ + +G S IS +E K + I + L L + Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] Length = 123 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +RK LT KE+ + A+S IS E G + D + A + L Sbjct: 1 MIGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|226938551|ref|YP_002802313.1| hypothetical protein pCC3_03 [Leuconostoc citreum] gi|229587262|ref|YP_002860113.1| hypothetical protein pFMBL1_p3 [Leuconostoc citreum] gi|209165330|gb|ACI41226.1| hypothetical protein [Leuconostoc citreum] gi|225380896|gb|ACN88702.1| hypothetical protein [Leuconostoc citreum] Length = 204 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK+ LTQ+E+ +++ + LE G+ +++ ++ +A+ L P+ L Sbjct: 5 NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGE-DVSLSSLSAIANALSVPISGLF 60 >gi|222082024|ref|YP_002541389.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726703|gb|ACM29792.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 160 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P +R + R IR + L+Q E+ ++ + I + E+GK+ ++ + Sbjct: 25 PDTPSIHPIDRHV-GQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYE 83 Query: 69 LAHTLDTPL 77 +A+ L+ P+ Sbjct: 84 IANCLNVPI 92 >gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] Length = 201 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79 >gi|111222160|ref|YP_712954.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111149692|emb|CAJ61384.1| Putative transcriptional regulator [Frankia alni ACN14a] Length = 100 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82 R IR+ LTQ+++ +R G ++ +++LE+G + I++ +I+A LD L +LL Sbjct: 29 ERLRAIRQLRGLTQQQVADRCGLTRTAVTDLESGRRRDISLGQALIIASALDVDLGRLLD 88 Query: 83 P 83 P Sbjct: 89 P 89 >gi|83952018|ref|ZP_00960750.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837024|gb|EAP76321.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 207 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R +RK T ++ + G A+S +S++E G+ + + + LA L+ + Sbjct: 23 EPLNLGQRVRELRKARDWTLEQAAKQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISV 82 Query: 78 WKLLK 82 +L Sbjct: 83 PQLFT 87 >gi|312865324|ref|ZP_07725552.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311099435|gb|EFQ57651.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 101 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RKE +TQK++ +G +Q I+ +ETGK++ ID ++ + L L Sbjct: 39 RARKEKGITQKQLEEMSGVSQPVIARMETGKTSPQIDTVLKVLACLGKNL 88 >gi|312953700|ref|ZP_07772536.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310628374|gb|EFQ11657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315151831|gb|EFT95847.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R E LTQ E+ + + IS E KS NID +I L++ + L +LLK Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 55 >gi|260888585|ref|ZP_05899848.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838124|ref|YP_004412704.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260861782|gb|EEX76282.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329745888|gb|AEB99244.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 97 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ER I R LTQKE+ +TG AQ+ +S +E G +I + A L Sbjct: 25 EPERNII-RAIVEARIAQNLTQKEVAEKTGIAQAELSRMENGLRNPSIKLLQRFAEGLGL 83 Query: 76 PLWKLLKP 83 L +P Sbjct: 84 VLKISFEP 91 >gi|271502480|ref|YP_003335506.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346035|gb|ACZ78800.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 106 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + R L+QK++ G A + I+ E G +ID L+ LD P Sbjct: 10 VFCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQQLSDALDVP 69 Query: 77 L 77 L Sbjct: 70 L 70 >gi|229549206|ref|ZP_04437931.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|307270616|ref|ZP_07551907.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276916|ref|ZP_07558026.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307287508|ref|ZP_07567551.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229305443|gb|EEN71439.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|306501246|gb|EFM70549.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306506339|gb|EFM75499.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512926|gb|EFM81567.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|315025553|gb|EFT37485.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315032799|gb|EFT44731.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035182|gb|EFT47114.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143802|gb|EFT87818.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315159317|gb|EFU03334.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162169|gb|EFU06186.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315164906|gb|EFU08923.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315168790|gb|EFU12807.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|329577382|gb|EGG58837.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 231 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R E LTQ E+ + + IS E KS NID +I L++ + L +LLK Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 55 >gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 141 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK + TQ+E+ + ++ I++ E+G+S +I + I LA + L L Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|186474250|ref|YP_001861592.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184196582|gb|ACC74546.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 215 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R+ RK LT ++ ++G A S IS+ E G + D LAH L Sbjct: 18 AQIDHQAVGARLRDARKARGLTLMQLSEQSGIAVSTISKAERGDIALTYDKFAALAHALQ 77 Query: 75 TPLWKLL 81 + Sbjct: 78 LEFDAIF 84 >gi|182438050|ref|YP_001825769.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778693|ref|ZP_08237958.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178466566|dbj|BAG21086.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659026|gb|EGE43872.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 285 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ Sbjct: 2 PSNVNPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRD 60 Query: 69 LAHTLDTP 76 L + Sbjct: 61 LCGVYEVE 68 >gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein [Geobacter bemidjiensis Bem] Length = 209 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R LTQKE G Q ++S +ETG+ + +I L+HT Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGI 63 >gi|94495587|ref|ZP_01302167.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] gi|94424975|gb|EAT09996.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] Length = 470 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R ++ R +R+E L+Q ++ G + S+++ LE + + M+ LA+T D Sbjct: 6 DRKLYLGPKLRVLRRELGLSQTQMAEELGVSPSYLNHLERNQRPLTAQMMLRLANTYDID 65 Query: 77 LWKLLKP 83 + P Sbjct: 66 IRDFAAP 72 >gi|17549539|ref|NP_522879.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17549570|ref|NP_522910.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431793|emb|CAD18471.1| putative dna-binding transcriptional regulatory transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431824|emb|CAD18502.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 205 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+E LT E+ R+G ++ + E+E G++ +I + +A + ++ Sbjct: 22 VSSRLKALRREHTLTLDELSRRSGVSKGMLVEIEKGEANPSIAILCKVAAAFGVSVADIV 81 >gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] Length = 120 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +R +EA LTQ+ + + G A++ ++ E GK +++ + +A Sbjct: 1 MFAERLKELRKREAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|146295669|ref|YP_001179440.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409245|gb|ABP66249.1| helix-turn-helix domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 124 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 25/47 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + LTQKE+ + G Q+ +S+LE+G+ + + ++ L Sbjct: 43 RIKNNLTQKELAQKLGMTQAMVSKLESGEYNPTVKMLYEISKALGLE 89 >gi|297242658|ref|ZP_06926596.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] gi|296888869|gb|EFH27603.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] Length = 214 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R EA LTQ+E+ +++ +++ ET + +I+N+ +A L + LL Sbjct: 7 LGEKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDYLL 66 >gi|296104791|ref|YP_003614937.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059250|gb|ADF63988.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 200 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RN RKE KL+ E+ R ++ + E+E G + +I + LA L + ++ Sbjct: 22 VANRIRNWRKEKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGISVADIV 81 >gi|255326363|ref|ZP_05367447.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296] gi|255296580|gb|EET75913.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296] Length = 135 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 36/79 (45%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ ++ R R++R+ T +E+ R + ++SE+E G+ + Sbjct: 22 RQVAPVVEEAKVVPLRQAIGEVLRDVRQRQGRTLREVSQRARVSLGYLSEVERGQKEASS 81 Query: 64 DNMIILAHTLDTPLWKLLK 82 + + + LD P+ ++L+ Sbjct: 82 ELLAWICQALDIPMSQMLR 100 >gi|256423770|ref|YP_003124423.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038678|gb|ACU62222.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 114 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ F +RK+ KL+Q EI + G + I E + +I+ +A L+ L Sbjct: 2 KQITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIAAALEVSL 61 Query: 78 WKLL 81 L+ Sbjct: 62 DYLV 65 >gi|298345880|ref|YP_003718567.1| hypothetical protein HMPREF0573_10754 [Mobiluncus curtisii ATCC 43063] gi|304390415|ref|ZP_07372368.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235941|gb|ADI67073.1| hypothetical protein HMPREF0573_10754 [Mobiluncus curtisii ATCC 43063] gi|304326171|gb|EFL93416.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 80 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R TQ+ + + G ++ I LE G + +D + A + PL +L Sbjct: 16 FGQLIRMRRVIFDYTQENLAEKAGVSRMAIKRLEAGNPNVRLDTALKAAQAVGVPLPTIL 75 Query: 82 K 82 + Sbjct: 76 E 76 >gi|239626415|ref|ZP_04669446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516561|gb|EEQ56427.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIR + KLTQ E+ R + +S E G ST NI+ + ++ D + LL Sbjct: 7 LKNIRVKNKLTQDEMAERLSVTRQAVSRWENGDSTPNIETLKQISIAFDVSINTLL 62 >gi|223983971|ref|ZP_03634129.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] gi|223964047|gb|EEF68401.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] Length = 179 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LT +E+ +R + ++S+LE ++ +I + + L T L K + Sbjct: 4 GYRIKQLRTKNNLTLEELASRCELTKGFLSQLERNLTSPSIATLQDIVEALGTTLAKFFQ 63 >gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] Length = 506 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+Q+++ R G ++ + +E G+ T ++ + LA L + +L Sbjct: 144 RVRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLTPSVAVALRLARALGCAVEELF 200 >gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] Length = 209 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +DA + ER+ R +R T + R G ++S IS +E G ++ + LA Sbjct: 11 DTDAGVNERI--ARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLA 68 Query: 71 HTLDTPLWKLL 81 L L L Sbjct: 69 AGLGISLASLF 79 >gi|158319324|ref|YP_001511831.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139523|gb|ABW17835.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 65 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 M+ R +R T +I N T ++S+I ELE G K +++ +++LA L + Sbjct: 1 MLNGLKVRELRNIKGYTTLDISNLTHISKSYIEELERGAKKNPSLNKVVVLAKVLGVKVD 60 Query: 79 KLL 81 +L+ Sbjct: 61 ELI 63 >gi|124009645|ref|ZP_01694317.1| DNA-binding protein [Microscilla marina ATCC 23134] gi|123984695|gb|EAY24680.1| DNA-binding protein [Microscilla marina ATCC 23134] Length = 85 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N RK+ +Q E+ + G I E + +ID +A+ L+ L Sbjct: 1 MSFGENVAVERKKKDFSQGELAKQVGITAVTIGRYERDEIKPSIDIATKIANALEVSLDY 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|76799152|ref|ZP_00781336.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76799661|ref|ZP_00781770.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76584989|gb|EAO61638.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|76585504|gb|EAO62078.1| transcription regulator [Streptococcus agalactiae 18RS21] Length = 97 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N + R +A LTQ E+ + G AQ+ + E G + + LA T L L Sbjct: 1 MLKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDETVEKLAEIFGTSLEIL 60 >gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 112 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RKEA LTQ+E+ + G ++ + E G+ D + +A+ L Sbjct: 1 MLSERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTPDKLTQIANLFGVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 127 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR + KLTQ+E+ R ++Q +++ E G S +I N++ + L+ + LL Sbjct: 5 NLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLL 61 >gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 168 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK+ ++Q+++ G ++ +S+ E+G+S ID +I L++ + LLK Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLK 63 >gi|255038048|ref|YP_003088669.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254950804|gb|ACT95504.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 79 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +RKE LTQ+++ G ++ IS+LE G ++ ID ++ + L + Sbjct: 9 LLGRAIRTVRKERNLTQEQLGELVGVQKAQISKLENGNNSATIDTILKVFSALKAEI 65 >gi|255602033|ref|XP_002537801.1| conserved hypothetical protein [Ricinus communis] gi|223515025|gb|EEF24581.1| conserved hypothetical protein [Ricinus communis] Length = 137 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R R R K TQ G ++S LE G +++D ++++ L+ Sbjct: 1 MVDRPPIGQVIRTERLNLKQTQASFAALCGITPQYLSLLELGDVNVSLDTLLMICKVLNK 60 Query: 76 PLWKLL 81 PL L+ Sbjct: 61 PLSVLM 66 >gi|254387621|ref|ZP_05002860.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294814993|ref|ZP_06773636.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326443362|ref|ZP_08218096.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701347|gb|EDY47159.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294327592|gb|EFG09235.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 276 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + RE+ F R++R E TQ+E+ R G + IS +ETG+ + Sbjct: 8 DPERSPREK--FGQVMRSLRDERGWTQEELAERAGCSSQHISAVETGRRPPTRRFASRID 65 Query: 71 HTLDT 75 T Sbjct: 66 RAFGT 70 >gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] Length = 155 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK KLTQ+E+ + ++ +S+ E + NI+ + +A LD + L+ Sbjct: 3 LGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQRKPNIEMLNKIAKALDVTVNDLM 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|118467423|ref|YP_887029.1| XRE family transcriptional regulator protein [Mycobacterium smegmatis str. MC2 155] gi|118168710|gb|ABK69606.1| transcriptional regulator, XRE family protein [Mycobacterium smegmatis str. MC2 155] Length = 112 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + RN R + T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLS 65 Query: 79 KLLK 82 ++L Sbjct: 66 RVLT 69 >gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 472 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +R+E LTQ + G + S+I++LE + + + ++ L+ D P Sbjct: 2 AKTFIGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLP 60 >gi|332292122|ref|YP_004430731.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170208|gb|AEE19463.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 115 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +N+RK KL+Q+E+ + ++S ++ +E+G +I + +A L+ + +LL Sbjct: 11 LGGNIKNLRKSRKLSQEELASFISLSRSSVANIESGYHQPSIHVIYQIAVVLECKITELL 70 >gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+RK+ L+Q + N ++ IS E GKS +++ +I ++ + +LLK Sbjct: 4 GEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDELLK 63 >gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 124 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+E+ + + + + E G + + + L+ L L+ Sbjct: 7 LGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDSLM 66 >gi|290580727|ref|YP_003485119.1| hypothetical protein SmuNN2025_1201 [Streptococcus mutans NN2025] gi|254997626|dbj|BAH88227.1| hypothetical protein [Streptococcus mutans NN2025] Length = 294 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R+ RK+ L+Q+++ ++ I++ E+G T ++ N++ L+ + + Sbjct: 1 MTFETRLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQ 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229553254|ref|ZP_04441979.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540134|ref|YP_003174633.1| transcription regulator [Lactobacillus rhamnosus Lc 705] gi|229313340|gb|EEN79313.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257151810|emb|CAR90782.1| Transcription regulator [Lactobacillus rhamnosus Lc 705] Length = 67 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+E KL+Q + + G A+ I+ +E GK +++ + L+ TL T L L Sbjct: 2 NRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLF 59 >gi|229000727|ref|ZP_04160239.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] gi|228759027|gb|EEM08061.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] Length = 145 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+++ + G + + + E+ KS +IDN+I+L+ + + +L+ Sbjct: 6 LGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] Length = 178 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +M + R RKE LTQ+E+ R G +++ E G + +I+ + +A L L Sbjct: 3 QMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARLLHISLD 62 Query: 79 KLL 81 LL Sbjct: 63 TLL 65 >gi|220904493|ref|YP_002479805.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868792|gb|ACL49127.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 94 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 34/70 (48%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D I + R+ A LTQ E+ +G ++ ++S LE G+ +++ ++ +A Sbjct: 2 DKIPNLNWALAKVVKEARETAGLTQNELAGFSGLSEIYLSSLERGQRGDSLNALMQIAGV 61 Query: 73 LDTPLWKLLK 82 L +L++ Sbjct: 62 LKLEASELVR 71 >gi|182626781|ref|ZP_02954520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens D str. JGS1721] gi|177907881|gb|EDT70476.1| transcriptional regulator, Cro/CI family [Clostridium perfringens D str. JGS1721] Length = 63 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + NN + IRKE + +E+ +G + I +E+GKS I+ + LA LD + + Sbjct: 1 MLSNNLKKIRKEKNIGIRELDKISGVSHPIIINIESGKSKNPTINTVKKLAKALDVSIDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LVE 63 >gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] Length = 185 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ LT +E+ NR+ + ++S+LE ++ +I + + L T L + Sbjct: 12 GGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLTSPSITTLEDILEALGTNLQEFF 70 >gi|168183395|ref|ZP_02618059.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|182673482|gb|EDT85443.1| conserved hypothetical protein [Clostridium botulinum Bf] Length = 177 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +R + L ++ +G ++ +S++E G+S I+ + +A+ L KL Sbjct: 6 IISANLKKLRTDPNLNLGQLFELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] Length = 215 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+RK+ L+Q + N ++ IS E GKS +++ +I ++ + +LLK Sbjct: 4 GEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDELLK 63 >gi|24379268|ref|NP_721223.1| transcription regulator [Streptococcus mutans UA159] gi|24377185|gb|AAN58529.1|AE014922_4 hypothetical protein; putative transcriptional regulator [Streptococcus mutans UA159] Length = 296 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R+ RK+ L+Q+++ ++ I++ E+G T ++ N++ L+ + + Sbjct: 3 MTFETRLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQ 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|134298619|ref|YP_001112115.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051319|gb|ABO49290.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 69 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E +TQ+++ ++ G ++ + +E GK ++ +A + + Sbjct: 3 NRLRELRNELNITQEQLADKLGVSRQTVISIENGKYNPSLILAYKIAKIFAISIEEAF 60 >gi|289770224|ref|ZP_06529602.1| DNA-binding protein [Streptomyces lividans TK24] gi|289700423|gb|EFD67852.1| DNA-binding protein [Streptomyces lividans TK24] Length = 154 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 22 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 80 >gi|288962158|ref|YP_003452453.1| transcriptional regulator [Azospirillum sp. B510] gi|288914424|dbj|BAI75909.1| transcriptional regulator [Azospirillum sp. B510] Length = 483 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 32/64 (50%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A + ++ + R +R++ LTQ ++ ++ G + S+++ +E + + + ++ L Sbjct: 2 ASMDKKAMLGPKVRRLRRDQGLTQAQMADQLGISPSYLNLIEHNQRPVTVPLLLKLGQRF 61 Query: 74 DTPL 77 L Sbjct: 62 GVDL 65 >gi|255035795|ref|YP_003086416.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948551|gb|ACT93251.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 273 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 N + +R KL+Q+ + + G ++ ++ +E+G+ + +D++I + + LLK Sbjct: 11 NIKFLRLRQKLSQEALAEKLGISRVKLNAIESGRTANPTVDDLINFSEYFRMSIDSLLK 69 >gi|227495327|ref|ZP_03925643.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226831197|gb|EEH63580.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 68 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +RKE L+Q+E+ G +++ IS +ETG+ ++L LD L Sbjct: 9 NNLPQVRKEKGLSQQELAKLVGVSRNTISSIETGQYCPTAKLALVLCVALDQKFEDLF 66 >gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 77 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ R+ +T + + N G ++ +S +ETGK +++ N+ ++ LD L L+ Sbjct: 10 GSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVLDISLDYLV 68 >gi|213019847|ref|ZP_03335649.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994595|gb|EEB55241.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 14 RYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIA 73 Query: 79 KLL 81 L+ Sbjct: 74 DLI 76 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQK++ + + IS E G+ I ++ + +A TL + LL+ Sbjct: 171 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 230 >gi|167757680|ref|ZP_02429807.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] gi|167664700|gb|EDS08830.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] Length = 76 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI+ + R +R+++ L+QK I + G Q+ S+ E GK ++ ++ +I L + Sbjct: 9 MIYRDRLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQFYNVSADY 68 Query: 80 LL 81 +L Sbjct: 69 ML 70 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+E+ + + IS+ E G S + D +I ++ L+TP+ L Sbjct: 1 MLNENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|163938006|ref|YP_001642891.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865861|gb|ABY46916.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E LTQ+++ + A+ I +E GK ++ + +A LD L L Sbjct: 3 NKIKLSRIEKSLTQEQLAFQVKVARQTIGLIEKGKYNPSLQLCLAIAKALDKTLNDLF 60 >gi|270300235|gb|ACZ69041.1| Transcriptional regulator, xre family [Staphylococcus aureus] Length = 207 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK ++TQ+E+ R G ++ IS E ++ +I+ +II++ D L L+ Sbjct: 3 FGEQIKQLRKSNEITQQEMGARLGVSRQAISHWENNRNLPDIEMLIIISKEFDISLDILI 62 >gi|262403444|ref|ZP_06080002.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262349948|gb|EEY99083.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 207 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR +T ++ RTG A+S +S++E + + M LAH L + Sbjct: 24 EPLKLGQRIKDIRTRLGITLEKASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|163796221|ref|ZP_02190182.1| transcriptional regulator, XRE-family protein [alpha proteobacterium BAL199] gi|159178363|gb|EDP62905.1| transcriptional regulator, XRE-family protein [alpha proteobacterium BAL199] Length = 195 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F RK+A L+ E+ R+G ++S +S++E + I + + L+ Sbjct: 17 FGGEILRARKDAGLSLDELARRSGVSKSILSQIERDSTNPTIATVWRICAALERTPESFF 76 Query: 82 K 82 + Sbjct: 77 R 77 >gi|149202181|ref|ZP_01879154.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] gi|149144279|gb|EDM32310.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] Length = 468 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 30/65 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R +R+E TQ ++ + + S+I+ LE + ++++ ++ +A Sbjct: 2 AKTLIGPRLRQLRRERGQTQADMARKLDVSPSYINLLENNQRSLSVQMLMSIADAYAVDW 61 Query: 78 WKLLK 82 L + Sbjct: 62 RDLTR 66 >gi|111221332|ref|YP_712126.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111148864|emb|CAJ60542.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 198 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R A L+ E+ RT +++ +S++E +++ ++ + LA L P+ Sbjct: 12 QVIAARVREYRLAAALSVAELARRTEMSKAMLSKIENAQTSCSLSTLGRLAAGLGVPVTA 71 Query: 80 LLK 82 L + Sbjct: 72 LFR 74 >gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 111 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+A LTQ E+ ++ G QS ++ E GK +N++ +A L+ + L+ Sbjct: 3 FSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSVDYLV 62 >gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] Length = 201 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79 >gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 176 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ ++Q+E+ + G + +S E + ++D LA L L Sbjct: 1 MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLYGVSLDDL 60 >gi|162448725|ref|YP_001611092.1| Cro/CI family transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159307|emb|CAN90612.1| transcriptional regulator, Cro/CI family [Sorangium cellulosum 'So ce 56'] Length = 92 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R++ +TQ+++ G + +E G+ ++++ ++ LA+ LD LL+ Sbjct: 14 AANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPGVLLR 73 >gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 247 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK KLTQK++ ++ + +S+ E G S +I ++ LA+ D + +LL Sbjct: 9 VGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSMPSIPLLMPLANLFDITVTELL 68 Query: 82 K 82 K Sbjct: 69 K 69 >gi|260574980|ref|ZP_05842982.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259022985|gb|EEW26279.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 446 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 29/76 (38%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++ + + + R+ R + + Q E+ G + +++S +E + +I Sbjct: 2 QKAIEIIPGIAQLAHELTGSRIRDKRLQRAMRQSELAELAGISATYLSLIERNRRSIGGK 61 Query: 65 NMIILAHTLDTPLWKL 80 + +A L L Sbjct: 62 LLNQIARALAVEPVSL 77 >gi|239834303|ref|ZP_04682631.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239822366|gb|EEQ93935.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 470 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|166032267|ref|ZP_02235096.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC 27755] gi|166027990|gb|EDR46747.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC 27755] Length = 80 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78 + N ++ R++AKLTQ ++ R + S++S++E +++I + +A+ L + Sbjct: 12 VIGANIKHYREQAKLTQVQLAERAKISISYLSKIEAAGCDKSLSISVLNQIANVLSVDIN 71 Query: 79 KLLK 82 + K Sbjct: 72 EFFK 75 >gi|318061199|ref|ZP_07979920.1| hypothetical protein SSA3_24859 [Streptomyces sp. SA3_actG] gi|318076959|ref|ZP_07984291.1| hypothetical protein SSA3_09605 [Streptomyces sp. SA3_actF] Length = 288 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R +R+ A LTQ ++ + S+I++ E G+ D L L T Sbjct: 18 FGEELRRLREAAGLTQADLAELVFVSASYIAQFEAGRRKPMEDVAKRLDQALKT 71 >gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 130 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +RKE LTQ+++ G ++S I+ ET + + + + +A + + Sbjct: 1 MTFSDRLKELRKEKNLTQEDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|293401078|ref|ZP_06645223.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306104|gb|EFE47348.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 177 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LT +E+ +R+ + ++S++E ++ ++ + + L T L K Sbjct: 4 GAKIKALRIQNDLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLASFFK 63 >gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24] gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24] Length = 208 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ LT ++ TG + S +S LE+G+ + +++ LA PL +L+ Sbjct: 21 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 80 >gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 186 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+++ L+ E+ + G A+S +S+LE+G +I+ + L LD P + Sbjct: 9 ELISKALVRERQKSGLSLSELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFAR 68 Query: 80 LLK 82 L++ Sbjct: 69 LIE 71 >gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 509 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|229070587|ref|ZP_04203825.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228712492|gb|EEL64429.1| Transcriptional regulator, MerR [Bacillus cereus F65185] Length = 186 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 9 GQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67 >gi|229130504|ref|ZP_04259460.1| Transcription regulator, probable-related protein [Bacillus cereus BDRD-Cer4] gi|228652843|gb|EEL08725.1| Transcription regulator, probable-related protein [Bacillus cereus BDRD-Cer4] Length = 68 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 4 LYLNNVKQYRKSEDLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63 Query: 81 L 81 Sbjct: 64 F 64 >gi|212633084|ref|YP_002309609.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3] gi|212554568|gb|ACJ27022.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3] Length = 240 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ R L+Q E+ G QS++S+LE KS + D L L + Sbjct: 1 MTLGKQIKHYRTARDLSQPELAEMMGIEQSYLSKLENDKSIPSNDVFRSLLTALSVNTTE 60 Query: 80 LL 81 L Sbjct: 61 FL 62 >gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] Length = 509 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] Length = 217 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 ++ + +RK+ +TQ E+ R+G +++IS+LE+GK+ + + LA LD Sbjct: 3 DKSSIGITLKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQKLARGLDIS 62 Query: 77 LWKLL 81 LL Sbjct: 63 TSALL 67 >gi|75677167|ref|YP_319588.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74422037|gb|ABA06236.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 483 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 A + +F FR +R++ L+Q + G + S+++ +E + + ++ LA T Sbjct: 2 ASDPGKKLFVGPRFRRVRQQLGLSQTQFAEGLGISPSYVNLIERNQRPVTAQILLRLAET 61 Query: 73 LDTPLWKL 80 D L L Sbjct: 62 YDLDLRDL 69 >gi|39937455|ref|NP_949731.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293238|ref|YP_001993843.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39651314|emb|CAE29836.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] gi|192286987|gb|ACF03368.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q +I G + S+++ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|319792272|ref|YP_004153912.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594735|gb|ADU35801.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 283 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 8 EPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 H S A R F + R+ R +L+Q ++ + +S +ETG++ + + + Sbjct: 6 STHSSKAGQPGARDPFGAHLRHWRTHRRLSQLDLAQEAEVSTRHLSYVETGRAAPSREMV 65 Query: 67 IILAHTLDTPLWK 79 + LA L+ PL + Sbjct: 66 LRLAARLEVPLRE 78 >gi|295106118|emb|CBL03661.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E L+Q ++ G ++ IS +ETG ++L LD L Sbjct: 23 NRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAKLALVLCIALDKKFEDLF 80 >gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297937|gb|EFA90394.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 235 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R LT KE+ + G + S I + E G D + ++ L+ P+ K Sbjct: 1 MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINK 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|229590656|ref|YP_002872775.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229362522|emb|CAY49429.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 193 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + R A L+ E+ R G A+S +S+LE+G +I+ + LA + + + Sbjct: 18 LLALSIKRERLAAGLSLTELAKRAGVAKSTLSQLESGIGNPSIETLWSLAMAMGLQVTRF 77 Query: 81 LK 82 + Sbjct: 78 FE 79 >gi|228948403|ref|ZP_04110686.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811390|gb|EEM57728.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 206 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLD 74 ++ R +RKE KL+ ++ TG + ++S+LETG +I+ + LA LD Sbjct: 3 KIELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLETGSNKKPSIEILEKLALGLD 59 >gi|229099134|ref|ZP_04230068.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29] gi|228684362|gb|EEL38306.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29] Length = 209 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLD 74 ++ R +RKE KL+ ++ TG + ++S+LETG +I+ + LA LD Sbjct: 3 KIELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLETGSNKKPSIEILEKLALGLD 59 >gi|163793593|ref|ZP_02187568.1| putative transcriptional regulatory protein [alpha proteobacterium BAL199] gi|159181395|gb|EDP65910.1| putative transcriptional regulatory protein [alpha proteobacterium BAL199] Length = 218 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ R ++T ++ R G + S++S +E G + ++ N+I +A L + L+ Sbjct: 12 GDAIRDRRTSRRMTLGDLAARCGLSVSFLSRVERGHAQSSVGNLIRIADALGGTIHDLIG 71 Query: 83 P 83 P Sbjct: 72 P 72 >gi|160942794|ref|ZP_02090035.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] gi|158445959|gb|EDP22962.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] Length = 134 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L++ + R + R K+TQ+ + G ++ +S+ E G S N N++ Sbjct: 50 PKLTEEVKIVRKSLSEMLKENRTRCKMTQEFVAETIGVSRQAVSKWENGTSEPNTSNLMA 109 Query: 69 LAHTLDTPLWKLLK 82 LA P LLK Sbjct: 110 LARLYGIPAEDLLK 123 >gi|154501529|ref|ZP_02039230.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC 29799] gi|150269783|gb|EDM97327.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC 29799] Length = 106 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ R RK+ LT +++ +++ ++E G ++ + L L T Sbjct: 2 DKAALGQRLRQARKDKGLTSEKLSELCSINATYLRQIEAGTKVPSLPVFVSLCRELGTHP 61 Query: 78 WKLL 81 LL Sbjct: 62 DFLL 65 >gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 203 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R TQ EI + + IS E GKS ++D ++ ++ + LL Sbjct: 3 FRNYIKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKSYPDLDTLVKISDIYKISIDTLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|183219415|ref|YP_001840817.1| putative transcriptional regulator [Lactobacillus reuteri] gi|300908071|ref|ZP_07125544.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] gi|77745369|gb|ABB02585.1| putative transcriptional regulator [Lactobacillus reuteri] gi|179366402|gb|ACB86593.1| putative transcriptional regulator [Lactobacillus reuteri] gi|300894773|gb|EFK88122.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] Length = 91 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +RKE+ L+Q+++ + QS I+ +E+G + +ID + +A+ L L Sbjct: 36 LTKVRKESGLSQRDLATVSDVPQSTIARIESG-ANTSIDTLTKIANALGKRL 86 >gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 106 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +RKE +LTQ+++ + IS E G T + D + LA L Sbjct: 3 IVPERLKTLRKERQLTQEQLGELINVTKVSISGYENGNRTPDTDTLRRLADVFGVSTDYL 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] Length = 652 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 PH + R+ N R+ LT + + +++ IS LE G + + Sbjct: 2 PHSVEVDRAARI--GANIARARQRRGLTLDGLAELSCVSRATISALERGHGNPGVQTLWS 59 Query: 69 LAHTLDTPLWKLL 81 LA L LL Sbjct: 60 LADALGLNFAALL 72 >gi|323492270|ref|ZP_08097428.1| putative transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323313583|gb|EGA66689.1| putative transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 206 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 23 EPLKLGQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAVGLQIDM 82 Query: 78 WKLLKP 83 +L +P Sbjct: 83 PQLFEP 88 >gi|315223214|ref|ZP_07865075.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187646|gb|EFU21400.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 135 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ + LTQ+ + + ++ IS ET K +I ++ L+ L +LLK Sbjct: 4 GKKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDELLK 63 >gi|240171180|ref|ZP_04749839.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 109 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + L+ PL Sbjct: 6 REVIGDVLRGARTSQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICEALEVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 EVL 68 >gi|296141333|ref|YP_003648576.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029467|gb|ADG80237.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 128 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R A+++ +++ + G + ++S++E G + D + +A L L Sbjct: 16 LGEFIRAQRIAAEVSIRQLAEKAGVSNPYLSQIERGLRRPSADVLGQIAKALRLSAEVL 74 >gi|222095409|ref|YP_002529469.1| DNA-binding protein [Bacillus cereus Q1] gi|221239467|gb|ACM12177.1| DNA-binding protein [Bacillus cereus Q1] Length = 403 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|206974896|ref|ZP_03235811.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206746915|gb|EDZ58307.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 403 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|217959269|ref|YP_002337817.1| DNA-binding protein [Bacillus cereus AH187] gi|217068137|gb|ACJ82387.1| DNA-binding protein [Bacillus cereus AH187] Length = 403 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|116694764|ref|YP_728975.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113529263|emb|CAJ95610.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 198 Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVNLTDFL 76 >gi|323486126|ref|ZP_08091457.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum WAL-14163] gi|323692982|ref|ZP_08107203.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323400693|gb|EGA93060.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum WAL-14163] gi|323502983|gb|EGB18824.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 69 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + R E ++Q E+ G ++ IS +ETG+ ++L LD + Sbjct: 5 LILKNRLKTARAEQGISQGELAAMVGVSRQTISYIETGQFNPTAKLALLLCIALDKKFEE 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519] gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii] Length = 203 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ TQ+++ + +++ +S+ E+GK +ID++ ++ + LL Sbjct: 3 LGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKGYPSIDSLKNISALFKISIDDLL 62 >gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 469 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 2 GSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 54 >gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 371 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ LTQ+ + G S +S+ E G++ ++ ++ +A L L Sbjct: 7 VGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQISLDVLF 66 Query: 82 K 82 K Sbjct: 67 K 67 >gi|302866395|ref|YP_003835032.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302569254|gb|ADL45456.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] Length = 255 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ L+Q ++ + +S +ETGKS + D ++ LA L PL Sbjct: 4 HTVGELLRQWRQHRGLSQLDLAIAADVSARHVSLVETGKSKPSSDMILRLADQLHVPLRD 63 >gi|323343150|ref|ZP_08083381.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463214|gb|EFY08409.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 136 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+E LTQ ++ ++ +S E GK + +I ++ P+ LLK Sbjct: 6 NLKRLREENALTQDKVAQSLNVSRQAVSNWEQGKRYPDAIMLIQISEFYGVPVDDLLK 63 >gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] Length = 138 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 35/62 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK LTQ+++ + G ++ I + E G+S ++ +++ L++ + L Sbjct: 1 MIYKNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIPDLYSILELSNVYSITIDTL 60 Query: 81 LK 82 ++ Sbjct: 61 VR 62 >gi|153011249|ref|YP_001372463.1| hypothetical protein Oant_3929 [Ochrobactrum anthropi ATCC 49188] gi|151563137|gb|ABS16634.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 16 ERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLD 75 Query: 77 LWKL 80 L L Sbjct: 76 LDSL 79 >gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 224 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + G +S++S++E G S +I + L+ L + +L Sbjct: 43 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 99 >gi|41408076|ref|NP_960912.1| hypothetical protein MAP1978 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396431|gb|AAS04295.1| hypothetical protein MAP_1978 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 189 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 LT +E+ R G S +S LE+GK + +D++ LA L +LL+P Sbjct: 23 GLTLQEVGARAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 72 >gi|26988969|ref|NP_744394.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983786|gb|AAN67858.1|AE016417_6 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 197 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 34/67 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R + R +RK ++T K++ +G S +S++E + +++ + + A L+ Sbjct: 7 QLDRAVVGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNV 66 Query: 76 PLWKLLK 82 + +L + Sbjct: 67 DIAQLFR 73 >gi|148548701|ref|YP_001268803.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512759|gb|ABQ79619.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 197 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 34/67 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R + R +RK ++T K++ +G S +S++E + +++ + + A L+ Sbjct: 7 QLDRAVVGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNV 66 Query: 76 PLWKLLK 82 + +L + Sbjct: 67 DIAQLFR 73 >gi|329936216|ref|ZP_08286009.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329304326|gb|EGG48206.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 196 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + D + +A L L Sbjct: 9 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67 >gi|320094023|ref|ZP_08025848.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979067|gb|EFW10585.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 111 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 36/81 (44%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R + R + R+IR+ T +E+ + + ++SE+E G+ Sbjct: 1 MSRYSKGMEKKPRETALLRTELGDVLRDIRQRQGRTLREVSSEAQVSLGYLSEVERGQKE 60 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + + ++H L PLW +L Sbjct: 61 ASSELLDAISHALGVPLWFVL 81 >gi|309774543|ref|ZP_07669569.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308917658|gb|EFP63372.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 71 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+E+ N+ G + I +E G+ +I I + L L L Sbjct: 5 KIKMARMELDMSQEELANKVGATRQTIGLIEAGRYNPSIKLCIKICIALHKHLDDLF 61 >gi|309776485|ref|ZP_07671468.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915752|gb|EFP61509.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 303 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE+ ++Q+E+ +R ++ +S+ E + + M+++ + + LL Sbjct: 3 FGEKLQKLRKESGISQEELASRLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVSMDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum CFBP2957] Length = 201 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79 >gi|299142081|ref|ZP_07035215.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] gi|298576543|gb|EFI48415.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] Length = 103 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RK +LTQ+++ G + +IS++E G S + + + +A+ L Sbjct: 43 YAELLKEQRKMQRLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALG 95 >gi|325678167|ref|ZP_08157797.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110172|gb|EGC04358.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 221 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R +R +TQK+ TG +QS++S LE G+ + +I L Sbjct: 4 EKSQQYLKEVGERLRGVRLLMGITQKQAAEATGISQSFLSSLERGQKSACTAQIISLIRY 63 Query: 73 LDTP 76 P Sbjct: 64 YKVP 67 >gi|257438888|ref|ZP_05614643.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198703|gb|EEU96987.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 99 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++RK+ +TQ+++ + + ++++ETG +I+ + L+ L+ LL Sbjct: 8 FGGRIRDLRKKKGITQEQLSIMLNVSANHLAKVETGSRCCSIELLQDLSSCLNVRTDYLL 67 >gi|227508229|ref|ZP_03938278.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192458|gb|EEI72525.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 174 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R +Q+++ ++ + IS E G S ++ N+ +L+ D PL +K Sbjct: 9 SQLKKARIRKGYSQQQVADKLRVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVK 67 >gi|218290222|ref|ZP_03494376.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239697|gb|EED06888.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 382 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RM F N + +R+ A LT+ E+ R G + +E GK + + + LA L T + Sbjct: 28 RMKFPNAVKPLRELAGLTKSELARRVGITPQALGLIEQGKVSPSTHVALRLAKALGTTVE 87 Query: 79 KLLKP 83 L P Sbjct: 88 SLFDP 92 >gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 125 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +R+E KLTQ+E+ + + IS E G T + + + LA + L Sbjct: 6 VLGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGNRTPDTETLQKLADFFNVTTDYL 65 Query: 81 L 81 L Sbjct: 66 L 66 >gi|312126461|ref|YP_003991335.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776480|gb|ADQ05966.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 124 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + L+QKE+ + G +Q+ +S+LE+G + + +A L L Sbjct: 41 QYRIKNNLSQKELAQKLGISQAMVSKLESGDYNPTVKMLYEIAKKLGFEL 90 >gi|323527082|ref|YP_004229235.1| hypothetical protein BC1001_2760 [Burkholderia sp. CCGE1001] gi|323384084|gb|ADX56175.1| protein of unknown function DUF955 [Burkholderia sp. CCGE1001] Length = 386 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R A L+Q+ + G A++ + +E GK ++++ + A LD +L Sbjct: 11 ILGARLKAARVSASLSQEALAQTLGLARTTVVAIEAGKRKVSLEELRAFAEQLDVRESEL 70 Query: 81 L 81 L Sbjct: 71 L 71 >gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] Length = 78 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK L+Q + + G +++ I+++ETGK+ ++ +A+ LD ++++ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALDVCIYQIF 60 >gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 7 DEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 D L + +R + + +R+ + +T ++ +TG + S +S LE G ++ Sbjct: 25 DPEDLDNHEEIDRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAGLRRPTLE 84 Query: 65 NMIILAHTLDTPLWKLL 81 ++ LA L +L+ Sbjct: 85 QLLPLARAHGVTLDELV 101 >gi|255037817|ref|YP_003088438.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254950573|gb|ACT95273.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 109 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F +NFR +R+ A L+Q+ + + S I+ +E K ++I + LA+ L Sbjct: 27 FGSNFRKLREWAGLSQEALGASLNVSASVINRIENNKRRLDIQILQNLANALQ 79 >gi|255102244|ref|ZP_05331221.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] Length = 141 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK + TQ+E+ + ++ I++ E+G+S +I + I LA + L L Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 478 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 26/57 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + T Sbjct: 7 KTYVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGV 63 >gi|257061063|ref|YP_003138951.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256591229|gb|ACV02116.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 173 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E L + R+ + +RK+ LTQ+++ + G QSW+S+LE+ + ++++ Sbjct: 24 ETQLIEKQEVFRISLTQAMKQLRKKVGLTQQQLAEKLGVTQSWVSKLESANNDHTFESVL 83 Query: 68 ILAHTLDTPLWKL 80 + L P +++ Sbjct: 84 AYLNGL-VPDFEI 95 >gi|163943351|ref|YP_001642581.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865548|gb|ABY46606.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE KL+Q+++ ++ I+ +E K ++ LA +L + +L Sbjct: 5 IRILRKEKKLSQEDLAKLCHVSRQTINAIENNKYDPTLELAFNLAKSLGVTVDQLF 60 >gi|332877485|ref|ZP_08445232.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684591|gb|EGJ57441.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 101 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N RKEA++TQ E+ R +S+IS +E T ++ + + L +++KP Sbjct: 45 NARKEAQMTQSELAERINATKSYISRIEKEMITPSVSTFYRIINALGMR-VEIVKP 99 >gi|315222118|ref|ZP_07864027.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188744|gb|EFU22450.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 62 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R R L+Q E+ +TG ++ I+ +E K ++ I LA L T L L Sbjct: 2 NHVREFRNSLGLSQLELAKKTGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59 >gi|282933777|ref|ZP_06339130.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472134|ref|ZP_07812626.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 1153] gi|239529503|gb|EEQ68504.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 1153] gi|281302079|gb|EFA94328.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] Length = 122 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78 M R+ RK KLTQ+++ +G + ++IS +E G I+I + +A +L+ Sbjct: 3 MCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTP 62 Query: 79 KLL 81 L+ Sbjct: 63 SLI 65 >gi|254489741|ref|ZP_05102936.1| Cupin domain protein [Methylophaga thiooxidans DMS010] gi|224464826|gb|EEF81080.1| Cupin domain protein [Methylophaga thiooxydans DMS010] Length = 180 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 27/50 (54%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 E LT E+ R ++ +S++E G ++ +++ + LA+ L L +L Sbjct: 2 ENGLTIAEVSKRANVSRGMLSKIENGLTSPSLEKLEQLANALGVTLSRLF 51 >gi|160883333|ref|ZP_02064336.1| hypothetical protein BACOVA_01302 [Bacteroides ovatus ATCC 8483] gi|156111317|gb|EDO13062.1| hypothetical protein BACOVA_01302 [Bacteroides ovatus ATCC 8483] Length = 100 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 26/46 (56%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RK A+LTQ+E+ R G +S+IS +E G + ++ + + L Sbjct: 46 ARKNARLTQEELAKRIGANKSYISRIEKGITVPSVATFYRIINALG 91 >gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 224 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P DA + ER+ R +R T + R G ++S IS +E ++ + Sbjct: 26 PTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDK 83 Query: 69 LAHTLDTPLWKLL 81 LA L L L Sbjct: 84 LAAGLGISLAGLF 96 >gi|126700737|ref|YP_001089634.1| putative transcriptional regulator [Clostridium difficile 630] Length = 144 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N +++RK + TQ+E+ + ++ I++ E+G+S +I + I LA + L Sbjct: 2 KNMINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLD 61 Query: 79 KLL 81 L+ Sbjct: 62 DLV 64 >gi|116671946|ref|YP_832879.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116612055|gb|ABK04779.1| transcriptional regulator, XRE family [Arthrobacter sp. FB24] Length = 424 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F R R E LTQ E+ ++ S+IS LETG+ D + LA L+ L Sbjct: 5 FGEKLRAERLERGLTQAELGKDL-YSPSYISLLETGRREPTADVIEELARRLELAPKAL 62 >gi|324325802|gb|ADY21062.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 403 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|319946413|ref|ZP_08020650.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747381|gb|EFV99637.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 88 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 17 RERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ N + R E +TQ ++ + G + I +E GK + + + TLD Sbjct: 20 RKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLD 79 Query: 75 TPLWKLL 81 L +L Sbjct: 80 KTLDQLF 86 >gi|317120864|ref|YP_004100867.1| hypothetical protein Tmar_0015 [Thermaerobacter marianensis DSM 12885] gi|315590844|gb|ADU50140.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 73 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ +RK TQ ++ G +++ S+ E G ID I LA P+ +L Sbjct: 4 ENWVQLRKARGWTQYDVARMLGISRARYSQYELGLRNPPIDVAIRLADLFGVPIQELF 61 >gi|307329866|ref|ZP_07609020.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884477|gb|EFN15509.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 140 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + LA L L Sbjct: 9 LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67 >gi|296875924|ref|ZP_06899984.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296433086|gb|EFH18873.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 77 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 17 RERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ N + R E +TQ ++ + G + I +E GK + + + TLD Sbjct: 9 RKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLD 68 Query: 75 TPLWKLL 81 L +L Sbjct: 69 KTLDQLF 75 >gi|295700971|ref|YP_003608864.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440184|gb|ADG19353.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 190 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 KRD+ + ++ + R +RK + T E G ++ ++S++E G +T +I Sbjct: 2 KRDDRKSAAP-----LVMGSKIRALRKRLQRTLDETATAAGISKPFLSQVERGHATPSIS 56 Query: 65 NMIILAHTLDTPL 77 ++ +A L + Sbjct: 57 SLAGIAQALGVTM 69 >gi|295108110|emb|CBL22063.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 118 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LTQ+E+ + + I+ +E G+ + + LA L L L+ Sbjct: 9 LGQKMREARKKKDLTQQELADLNHVSVKQIASIEKGQINPSYLILKALAKVLPLSLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 196 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R + +T +++ N TGF+++ IS++E I + +A+ L+ + Sbjct: 9 GERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLNVKM 63 >gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length = 138 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 30/58 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+ R+ A+++ +++ ++G + ++S++E G + D + +A L L Sbjct: 23 GSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVL 80 >gi|254229181|ref|ZP_04922600.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. Ex25] gi|262395531|ref|YP_003287384.1| predicted transcriptional regulator [Vibrio sp. Ex25] gi|151938266|gb|EDN57105.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. Ex25] gi|262339125|gb|ACY52919.1| predicted transcriptional regulator [Vibrio sp. Ex25] Length = 207 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + I ++ ++IR + +T +E RTG A+S +S++E + + Sbjct: 10 PSMTLAKEQNDQNIEPLKL--GQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 68 TFQAMQKLALGLQIDMPQLFEP 89 >gi|126173068|ref|YP_001049217.1| helix-turn-helix domain-containing protein [Shewanella baltica OS155] gi|125996273|gb|ABN60348.1| helix-turn-helix domain protein [Shewanella baltica OS155] Length = 367 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F RK A L+ + N G + + I + E G + + N++ LA LD Sbjct: 1 MFAERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|317405899|gb|EFV86181.1| AroK1 protein [Achromobacter xylosoxidans C54] Length = 303 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 10 HLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + R F R +R +T+K + TG ++ ++ LE G +I Sbjct: 6 EDAAPTEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILV 65 Query: 66 MIILAHTLDTPLWKLL 81 ++ +A + L +L+ Sbjct: 66 LLQIAKAFNCALAELV 81 >gi|300940966|ref|ZP_07155490.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 21-1] gi|300454290|gb|EFK17783.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 21-1] Length = 93 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R+ KLT +E+ +RT +S++S +E + I + ++ L PL Sbjct: 5 GSTIKLCREARKLTLQELSDRTDLTKSYLSRIENNQRDPTITALEKISLALHIPL 59 >gi|199597759|ref|ZP_03211186.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] gi|199591375|gb|EDY99454.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] Length = 99 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ R+ A L+Q+E+ N++G ++ I+ +E G + +I+ + +A+ L Sbjct: 32 KSEKSKLASAYAVLEARRNAGLSQQELANKSGVPKTTIARIERG-NNTSIETLTKIANAL 90 Query: 74 DTP 76 Sbjct: 91 GKQ 93 >gi|169633695|ref|YP_001707431.1| putative transcriptional regulator [Acinetobacter baumannii SDF] gi|169152487|emb|CAP01455.1| putative transcriptional regulator [Acinetobacter baumannii] Length = 197 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R T + R ++S IS +E G+++ + LA+ L+ PL ++ Sbjct: 9 AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68 >gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis Bu] Length = 217 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P SD R R +R T + R+G ++S IS +E G ++ + Sbjct: 8 DAPADSDVNER----IARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVL 63 Query: 67 IILAHTLDTPLWKLL 81 LA L L L Sbjct: 64 DKLAAGLGVSLASLF 78 >gi|113460568|ref|YP_718632.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822611|gb|ABI24700.1| transcriptional regulator [Haemophilus somnus 129PT] Length = 146 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + IR KLTQKE+ +G + I E G + NI+ + +A L+ + Sbjct: 1 MISGKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISA 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|330961956|gb|EGH62216.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 180 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK +T + + +TG +S++S++E G +T +I + LA + + +L Sbjct: 4 RLKILRKRLGMTLEVLAEKTGITKSYLSKVERGLNTPSIAAALKLAAAFNVSVEELFT 61 >gi|325263048|ref|ZP_08129783.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031441|gb|EGB92721.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 118 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +LTQ+E+ + + + I+ +E GK + + +LA L L L+ Sbjct: 9 LGQKMLEARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRVLAKVLHISLDTLI 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|312868567|ref|ZP_07728762.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095864|gb|EFQ54113.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 204 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R++ LTQ ++ ++ + IS E GKS ++ ++ L+ L LL Sbjct: 3 FSTQIKQQRQQLGLTQADVASQLFVTRQTISNWEQGKSYPDLSMLVKLSEVYQVSLDSLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|307824117|ref|ZP_07654344.1| plasmid maintenance system antidote protein, XRE family [Methylobacter tundripaludum SV96] gi|307734901|gb|EFO05751.1| plasmid maintenance system antidote protein, XRE family [Methylobacter tundripaludum SV96] Length = 84 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +L+Q ++ TG QS IS +E K + I+ ILA L L+ Sbjct: 15 VGESVRIIRELQELSQNQLAELTGIPQSTISAIEHDKINLGIERAKILAKALKCHPAVLV 74 Query: 82 KP 83 P Sbjct: 75 FP 76 >gi|302543174|ref|ZP_07295516.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302460792|gb|EFL23885.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+E +T +E+ +QS IS LE G+ +I+ ++ L T Sbjct: 9 VRRRRLGQELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKVE 68 Query: 77 LWKLL 81 L+ Sbjct: 69 DKALV 73 >gi|296140142|ref|YP_003647385.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028276|gb|ADG79046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 113 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75 +RK ++Q+++ R G ++ IS +E S+ ++ + LA LD Sbjct: 15 LAYRLLTLRKARGISQEKLAERAGLHRNQISNIERNVSSGDRFSDPHMSTLYRLAAALDV 74 Query: 76 PLWKLL 81 P LL Sbjct: 75 PPALLL 80 >gi|295090185|emb|CBK76292.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 118 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + RKE LTQ+E+ + + + I+ +E GK + + LA + L Sbjct: 5 ELKELGLKLKATRKEKGLTQQELSDISHVSTKQIANIERGKMNPSYLILKALAKVVPLSL 64 Query: 78 WKLLKP 83 LL P Sbjct: 65 DSLLAP 70 >gi|257791126|ref|YP_003181732.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488144|ref|ZP_07946719.1| hypothetical protein HMPREF1023_00417 [Eggerthella sp. 1_3_56FAA] gi|257475023|gb|ACV55343.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912772|gb|EFV34306.1| hypothetical protein HMPREF1023_00417 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+I + +R+E L+Q+ G Q+ + ++E G+ ++ ID + +A LD + Sbjct: 7 RIILGKTIKMLREEQHLSQRRFALMVGTNQTHLWQIECGQVSVGIDLLCRIADGLDIKVK 66 Query: 79 KLL 81 L+ Sbjct: 67 DLI 69 >gi|253987632|ref|YP_003038988.1| phage n15 protein gp48 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779082|emb|CAQ82242.1| similar to protein gp48 from prophage n15 [Photorhabdus asymbiotica] Length = 99 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + ++ RK LTQ+++ + G + IS +E GKS N+D + A L Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAALG 89 >gi|229176556|ref|ZP_04303982.1| hypothetical protein bcere0006_55690 [Bacillus cereus MM3] gi|228606912|gb|EEK64308.1| hypothetical protein bcere0006_55690 [Bacillus cereus MM3] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + + +RK KLTQK++ + ++S +S++E G + I+ + +A+ L T + Sbjct: 5 KIKGSYVKELRKSKKLTQKQLAELSQISESMVSKIELGVKSTKIETLKKIANALSTTMDD 64 Query: 80 LL 81 L+ Sbjct: 65 LV 66 >gi|225021191|ref|ZP_03710383.1| hypothetical protein CORMATOL_01203 [Corynebacterium matruchotii ATCC 33806] gi|305681443|ref|ZP_07404250.1| DNA-binding family protein [Corynebacterium matruchotii ATCC 14266] gi|224945924|gb|EEG27133.1| hypothetical protein CORMATOL_01203 [Corynebacterium matruchotii ATCC 33806] gi|305659648|gb|EFM49148.1| DNA-binding family protein [Corynebacterium matruchotii ATCC 14266] Length = 107 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + +L R R+ R + +T +E+ + + ++SELE G+ ++ + Sbjct: 15 KRTPKTPEPLL--RQALGAALRSFRADKGITLRELAEISRVSPGYLSELERGRKEVSSEL 72 Query: 66 MIILAHTLDTPLWKLL 81 + + H L T + +L Sbjct: 73 LASVCHALGTSVSDVL 88 >gi|182417831|ref|ZP_02949145.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237668782|ref|ZP_04528766.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378294|gb|EDT75826.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237657130|gb|EEP54686.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 111 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E LTQ+E+ N G ++ IS+ E K + + LA + L LL Sbjct: 4 FGERLRQLRIEKNLTQEELANYFGLHKTRISQYELNKRQADDEMKKKLALYFNVSLDWLL 63 >gi|168178699|ref|ZP_02613363.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC 2916] gi|182670340|gb|EDT82314.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC 2916] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ K+TQ E+ +T QS +S++E GK I ++ +A L + +LL+ Sbjct: 4 GEKIRILREKYKITQYELSKKTNLTQSQVSKIEKGKRRITDVDLKEIAKALHVTIQELLE 63 >gi|329848452|ref|ZP_08263480.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843515|gb|EGF93084.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IR++ ++Q+ + +R G + + E G + ++ ++ +A L LL Sbjct: 2 GLNIRRIRRDLNMSQQVLADRIGLTFQQVQKYERGANRVSASKLVAIAKALGVSPASLL 60 >gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20] Length = 209 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+ K+TQK + +S+ E +S +I +I L++ + + ++L Sbjct: 4 LGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESNPDIQTLISLSNYFNVSVDEML 63 >gi|168181353|ref|ZP_02616017.1| MATE efflux family protein [Clostridium botulinum Bf] gi|182675343|gb|EDT87304.1| MATE efflux family protein [Clostridium botulinum Bf] Length = 147 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK+ + +I+ TG ++S ISELE KS+ + + +A L+ + Sbjct: 3 LGEKIRSIRKKKGYSILQIKELTGLSKSTISELENDKSSPTAETLQKIATALNVHVSDFF 62 >gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016] gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 200 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK ++Q E+ + G Q IS+ E G + + + +L+ + + LL Sbjct: 70 NRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSREPDTETLKLLSSIFNVSIDYLL 127 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R + +TQ+E+ + S I E + + +I+ + ++A L Sbjct: 1 MFGEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQNRRSPDIETLKLIADYFQCSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|30261146|ref|NP_843523.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|30254760|gb|AAP25009.1| DNA-binding protein [Bacillus anthracis str. Ames] Length = 73 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + R++ +Q ++ + ++ +S+ ETGK+ +I+ +I L+ + + Sbjct: 1 MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|88854989|ref|ZP_01129654.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] gi|88815517|gb|EAR25374.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] Length = 489 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 R D + + + R +R + LT ++ A S +S +E GK + + Sbjct: 3 PRTLSTADDEDMLDSLTVGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELKLS 62 Query: 65 NMIILAHTLDTPLWKLL 81 + LA D + LL Sbjct: 63 ELQKLARIFDVSVDDLL 79 >gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + D+ R + +R+ +T + TG + S +S LE G ++ ++ LA Sbjct: 1 MDDSTDRTLDAVGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAGLRRPTLEQLLPLA 60 Query: 71 HTLDTPLWKLL 81 L L+ Sbjct: 61 RAYGVTLDDLV 71 >gi|322390117|ref|ZP_08063652.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143244|gb|EFX38687.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 77 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ + G + I +E GK + + + TLD L +L Sbjct: 19 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 75 >gi|312868344|ref|ZP_07728544.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096089|gb|EFQ54333.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 64 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ + G + I +E GK + + + TLD L +L Sbjct: 6 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 62 >gi|300717478|ref|YP_003742281.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299063314|emb|CAX60434.1| Transcriptional regulator [Erwinia billingiae Eb661] Length = 185 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ ++Q+ + +G S IS +E K + + + L L + Sbjct: 9 GRRLSEIRQQMGMSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 67 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ ++ QS + E GK+ ++I+N +A + LL Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTNLSIENAKKVAKYFGVTIDYLL 60 >gi|229590309|ref|YP_002872428.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] gi|229362175|emb|CAY49077.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] Length = 235 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDT 75 R + + R++A L+Q + G +QS I E N+D++ +AH L Sbjct: 20 RSMKTLGSRIAHYREKAGLSQAALAKACGWKSQSRIGNYEKDAREPNLDDISKIAHELKI 79 Query: 76 PLWKLLKP 83 LL P Sbjct: 80 DPAALLLP 87 >gi|256851112|ref|ZP_05556501.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260660536|ref|ZP_05861451.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|282932249|ref|ZP_06337693.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] gi|297205977|ref|ZP_06923372.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256616174|gb|EEU21362.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260548258|gb|EEX24233.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|281303644|gb|EFA95802.1| XRE family transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149103|gb|EFH29401.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 122 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78 M R+ RK KLTQ+++ +G + ++IS +E G I+I + +A +L+ Sbjct: 3 MCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTP 62 Query: 79 KLL 81 L+ Sbjct: 63 SLI 65 >gi|210630941|ref|ZP_03296686.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM 13279] gi|210160256|gb|EEA91227.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM 13279] Length = 90 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D ER + + R A L+QKE+ R G S + LE G ++ + +AH Sbjct: 22 DEQQAEREVM-RSIVEARLAAGLSQKELAERCGMRASNLCRLENGNGNPSVATLAKVAHG 80 Query: 73 LDTPL 77 L L Sbjct: 81 LGKNL 85 >gi|167757513|ref|ZP_02429640.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|237735075|ref|ZP_04565556.1| predicted protein [Mollicutes bacterium D7] gi|167702510|gb|EDS17089.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|229381851|gb|EEO31942.1| predicted protein [Coprobacillus sp. D7] Length = 153 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ +Q+E+ ++ ++ IS E ++ +D + LA + L L Sbjct: 1 MLGEKLMRLRKKQGYSQQEVADKLSVSRQTISNWECDQALPAVDKAMELAQLYNISLDDL 60 Query: 81 LK 82 ++ Sbjct: 61 ME 62 >gi|163759848|ref|ZP_02166932.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] gi|162282806|gb|EDQ33093.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] Length = 205 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R++R + L K++ ++S +S++ETG + +I+ + + L+ + L Sbjct: 23 LIGARLRHMRIASGLKLKDVAAAADCSESMLSKVETGHVSPSINMLHRITKVLNVNISGL 82 Query: 81 LKP 83 P Sbjct: 83 FAP 85 >gi|157362947|ref|YP_001469714.1| XRE family transcriptional regulator [Thermotoga lettingae TMO] gi|157313551|gb|ABV32650.1| transcriptional regulator, XRE family [Thermotoga lettingae TMO] Length = 185 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R+ KLT +E+ +G IS++E GK + ++ + + L + L++ Sbjct: 9 GEKIRSLRQSKKLTVRELAKLSGVTPGLISQIEHGKVSPSLSTLKAILSALGETIISLVE 68 >gi|254246958|ref|ZP_04940279.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124871734|gb|EAY63450.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 301 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 12 SDAILRERMI------FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 D++ R+R + R +R+EAK T E+ + ++S++E + I++ + Sbjct: 37 PDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSS 96 Query: 66 MIILAHTLDTPLWKLLK 82 ++ +A L PL L++ Sbjct: 97 LVNVAKALGVPLGTLIE 113 >gi|21225063|ref|NP_630842.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|4539174|emb|CAB39703.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 204 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LT + G + + +S LETG+ ++ ++ LA T + +LL Sbjct: 16 VAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAELL 75 >gi|89100494|ref|ZP_01173355.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084760|gb|EAR63900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 50.4 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ G + S + E+E G D ++ +AH L + Sbjct: 2 EAEKWGRRIRAFRKLKGFTQESFAKELGVSVSVLGEIERGNRMPADDFIVQVAHVLKISI 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|331001960|ref|ZP_08325480.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411756|gb|EGG91161.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon 107 str. F0167] Length = 73 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+++ G ++ I+ +E G I + + + LD L +L Sbjct: 5 KLKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELF 61 >gi|325276538|ref|ZP_08142289.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324098326|gb|EGB96421.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 93 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 L + F +R+ +++Q ++ + F ++ IS LE G + +D +I L Sbjct: 6 KPPLSHNIAFGLVVAELRRGRRMSQDKLSEASNFDRTSISLLERGLRSPTLDTVICLCRA 65 Query: 73 LDTPLWKL 80 L+ P +L Sbjct: 66 LEIPYSQL 73 >gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R +R++ L QK++ + + +S E GK +++ + A + Sbjct: 12 KLFGLRIRELREKQGLQQKDVAKKLNISNQALSNYELGKRMPSLEMVKKFADFFNVSTDY 71 Query: 80 LL 81 L+ Sbjct: 72 LM 73 >gi|300115620|ref|YP_003762194.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541562|gb|ADJ29873.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 104 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + N RN RK+ TQKE+ ++G AQ+ IS LE GKS + ID++ LA + Sbjct: 1 MIGNIVRNRRKQLGWTQKELAEKSGVAQAQISRLEAGKSYNVTIDSLRNLAWAFGCSVID 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|296140867|ref|YP_003648110.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029001|gb|ADG79771.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 183 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A + E+ R A+S +S+LE G +++ + LA L+ P +LL Sbjct: 10 AAGIQRERTRAGWSMAELARRANIAKSTLSQLEAGTGNPSVETLWALATALEIPFAQLL 68 >gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 65 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ L+Q + + G A+ I+ +E K +++ + LAH L T L L Sbjct: 2 NRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNSLF 59 >gi|197303199|ref|ZP_03168241.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] gi|197297739|gb|EDY32297.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] Length = 108 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 26/55 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R +TQ++ + +IS+LE G S ++++ ++ ++ + Sbjct: 6 KTLGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFN 60 >gi|172040548|ref|YP_001800262.1| putative transcriptional regulator ClgR [Corynebacterium urealyticum DSM 7109] gi|171851852|emb|CAQ04828.1| putative transcriptional regulator ClgR [Corynebacterium urealyticum DSM 7109] Length = 146 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP DEP L R R+ R++ T +E+ + ++SELE G+ Sbjct: 49 MPMAPSDEPLL-------REALGATLRDTRRQTGFTLRELAKLANVSPGYLSELERGRKE 101 Query: 61 INIDNMIILAHTLDTP 76 ++ + + + H + Sbjct: 102 VSSELLASVCHAMGIS 117 >gi|167768955|ref|ZP_02441008.1| hypothetical protein ANACOL_00272 [Anaerotruncus colihominis DSM 17241] gi|167668595|gb|EDS12725.1| hypothetical protein ANACOL_00272 [Anaerotruncus colihominis DSM 17241] Length = 70 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I NN R + L+Q+E+ ++G + S +++E + ++ + L+ P+ Sbjct: 4 KDILANNLLCFRSDNHLSQEELAWKSGLSVSGYTKIERAEIQSSLRTLDKLSQGTGLPVM 63 Query: 79 KLLKP 83 LL P Sbjct: 64 DLLTP 68 >gi|163858543|ref|YP_001632841.1| DNA-binding [Bordetella petrii DSM 12804] gi|163262271|emb|CAP44574.1| conserved hypothetical protein, DNA-binding [Bordetella petrii] Length = 94 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + L Q+ + G +S + ++E G + ++ +A L+ +L+ Sbjct: 25 FGAAVRAARMQRGLAQETLAYLAGIERSHMGKIERGGHLPTLVLILRIAKALECSAAELI 84 >gi|27377565|ref|NP_769094.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350709|dbj|BAC47719.1| bll2454 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR IR++ L+Q +I G + S+++ +E + + ++ LA T D L Sbjct: 7 KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5] gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5] Length = 157 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +RK LTQ+E+ + ++ IS+ E+G++ ++ +I L+ LLKP Sbjct: 5 EKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDYLLKP 64 >gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] Length = 112 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R+E +Q+E+ R G ++ +S+ E +S+ + N+I LA Sbjct: 16 AQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69 >gi|260463544|ref|ZP_05811743.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259030635|gb|EEW31912.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ IF R IR LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 DQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVD 62 Query: 77 LWKL 80 +L Sbjct: 63 PHEL 66 >gi|251778028|ref|ZP_04820948.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082343|gb|EES48233.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 248 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 32/66 (48%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 LS L +++ ++ R K T + + + ++S+I ++E+G+ + + + +A Sbjct: 3 LSKTDLGKKIKEARKLKSERSGKKYTGQNLADDLKLSRSYIGDIESGRKYPSYELLTAIA 62 Query: 71 HTLDTP 76 + P Sbjct: 63 DACEVP 68 >gi|228978563|ref|ZP_04138938.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228781162|gb|EEM29365.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] Length = 114 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E+ N+ ++S IS LE + ++D++ +A + + LL Sbjct: 4 FGENLKKFRNSHTLTQAELGNKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSIDALL 63 >gi|228472110|ref|ZP_04056876.1| helix-turn-helix domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228276313|gb|EEK15037.1| helix-turn-helix domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 125 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I +N+RK L+Q+E+ +QS + +E+G S ++ L + Sbjct: 3 EIVGEKIKNLRKSKNLSQEEVAEYIHLSQSTYARMESGASNSWAGYILPLCDLFGIQPEE 62 Query: 80 LLK 82 LLK Sbjct: 63 LLK 65 >gi|227819893|ref|YP_002823864.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338892|gb|ACP23111.1| putative transcriptional regulator Xre familiy [Sinorhizobium fredii NGR234] Length = 201 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ DE ++++A+ E M R +RK LT +++ + + ++S++E ++ + I Sbjct: 7 RRADEWNVAEAV--EEMAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPI 64 Query: 64 DNMIILAHTLDT 75 + ++ TL Sbjct: 65 GVLKKISDTLGV 76 >gi|149924176|ref|ZP_01912553.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149814977|gb|EDM74537.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 141 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ +LT K + RT + S +S++E +S+ ++ ++ +A+ LD + + Sbjct: 77 LTIGKRIREFRRARELTLKHMSRRTNLSVSLLSQIERAESSASVSSLYKIANALDVRISE 136 Query: 80 LL 81 L Sbjct: 137 LF 138 >gi|29376794|ref|NP_815948.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256960853|ref|ZP_05565024.1| predicted protein [Enterococcus faecalis Merz96] gi|29344259|gb|AAO82018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256951349|gb|EEU67981.1| predicted protein [Enterococcus faecalis Merz96] Length = 121 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R LTQ+E+ +++G A + ++E G+ + + + L L Sbjct: 7 KFLGRHIRAERVRCNLTQQELADQSGLAVKTVQDIEKGRKNPSYETLSRLIERLGISPNV 66 Query: 80 LLK 82 L + Sbjct: 67 LFQ 69 >gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 118 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK Q ++ G + IS E G T N+D+++ L L +LL Sbjct: 9 GVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67 >gi|317403875|gb|EFV84348.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 201 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +A L +R+ + + +R E + E+ R G +++ +S LE + + + L Sbjct: 18 PEADLDQRL--ADRLKTLRVERGWSLDELAGRAGVSRATLSRLENAEVSPTASVLGKLCG 75 Query: 72 TLDTPLWKLLK 82 + +L++ Sbjct: 76 AYGMTMSRLMR 86 >gi|311032135|ref|ZP_07710225.1| transcriptional regulator, XRE family protein [Bacillus sp. m3-13] Length = 64 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q E+ G ++ I +E GK ++ + + L L +L Sbjct: 5 KMKMARVEKDLSQDELAKIVGVSRQTIGLIELGKYNPSLSLCLSICKALSKTLDQLF 61 >gi|311104338|ref|YP_003977191.1| hypothetical protein AXYL_01132 [Achromobacter xylosoxidans A8] gi|310759027|gb|ADP14476.1| helix-turn-helix family protein 2 [Achromobacter xylosoxidans A8] Length = 101 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + Q+E+ + G +S + ++E G+ + ++ +A L +L+ Sbjct: 25 FGAAVRVARLTQGIAQEELAAKAGIERSHMGKIERGEHMPTLALILRIAAGLKLSAAELV 84 >gi|295094003|emb|CBK83094.1| nucleotide sugar dehydrogenase [Coprococcus sp. ART55/1] Length = 493 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 28/52 (53%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ ++ + TG ++ IS +E +I+ + L+ L+ L ++ Sbjct: 17 RKEKGMTQAQLADATGINRALISRIEQKDFVPSIEQLESLSEVLNFDLTEMF 68 >gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039] gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039] Length = 145 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +T + + + ++ IS E G + +I+N+ +L+ PL L Sbjct: 4 KLKRLRKEHGITHENLAEKLHVSRQTISNWENGNTLPDIENLKLLSQFYHIPLSYLF 60 >gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 77 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK L+Q + + G +++ I+++ETGK+ ++ +A+ L ++++ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCIYQIF 60 >gi|225388847|ref|ZP_03758571.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] gi|225045122|gb|EEG55368.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] Length = 201 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK+ T ++ TG++ +IS+LE + ++ + +A L L+ Sbjct: 6 NRIREERKKKGYTLAQVARETGYSIGYISQLERNQKEPSLAALRKIAACLGCSEVYLI 63 >gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] Length = 222 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK+A +TQ E+ + A+S I++ ETG S+ + + LA +L Sbjct: 15 QNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWSSPRMGMVQKLAGVFGVTSADML 72 >gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 107 Score = 50.0 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK L+Q+E+ ++ IS+ ETGKS D +I+L+ D L LLK Sbjct: 7 IKENRKLKNLSQEELAKELHISRQSISKWETGKSLPTTDQLILLSEIFDCSLDTLLK 63 >gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 183 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ + + +TG +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 74 Query: 82 KP 83 P Sbjct: 75 TP 76 >gi|206560913|ref|YP_002231678.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036955|emb|CAR52867.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 94 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R R + R F R R L Q+ + + G A+S + ++E G+ Sbjct: 2 QRGRPAGTRTYESEPARA-FGVAVREARTAQGLAQEVLAEQAGIARSHMGKIERGEHMPT 60 Query: 63 IDNMIILAHTLD 74 + ++ +A L Sbjct: 61 LVLILRIAKGLG 72 >gi|56965322|ref|YP_177054.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911566|dbj|BAD66093.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 303 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN+R + ++Q+ I + +QS IS++E GK NI + +A L P+ L Sbjct: 6 GMEIRNLRMKLGMSQENISSSV-VSQSAISKIENGKYIPNIIVLEAIASKLGVPVDHFLT 64 >gi|89895494|ref|YP_518981.1| hypothetical protein DSY2748 [Desulfitobacterium hafniense Y51] gi|89334942|dbj|BAE84537.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 118 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STI 61 R D D + + RK ++TQ ++ R G ++S++ET I Sbjct: 34 RGDDMSKSWDINDKRFIQIGLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPI 93 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + +A P K L+ Sbjct: 94 SLKTLFAIADLFHVPPHKFLE 114 >gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+RK+ L+Q + N ++ +S E GKS +++ +I ++ + +LL+ Sbjct: 4 GEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDELLR 63 >gi|315650099|ref|ZP_07903175.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315487591|gb|EFU77898.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R I + R R+ LT +E+ R +++ +S+ E G +++D + ++ L Sbjct: 6 RKI-GSLIRQFRQSKALTIEELAERINKSRATLSKYEKGDIVLDVDTLYDISDALGIQAE 64 Query: 79 KLL 81 +LL Sbjct: 65 QLL 67 >gi|284055750|pdb|3KXA|A Chain A, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae gi|284055751|pdb|3KXA|B Chain B, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae gi|284055752|pdb|3KXA|C Chain C, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae gi|284055753|pdb|3KXA|D Chain D, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae Length = 141 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R + TQ E+ G Q ++S +E K ++ + LA+ L ++ Sbjct: 70 GETFVSLRXKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 127 >gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 215 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+RK+ L+Q + N ++ +S E GKS +++ +I ++ + +LL+ Sbjct: 4 GEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDELLR 63 >gi|222530280|ref|YP_002574162.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621353|ref|YP_004022966.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|222457127|gb|ACM61389.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] gi|312201820|gb|ADQ45147.1| helix-turn-helix domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 124 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 26/50 (52%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + L+QKE+ + G +Q+ +S+LE+G + + +A L L Sbjct: 41 QYRIKNNLSQKELAQKLGISQAMVSKLESGDYNPTVKMLYEIAKKLGFEL 90 >gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 186 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+ LTQ+++ G ++ + LE+G + + + A L + ++L Sbjct: 11 LAKNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAANPTLGVLHRAAAALQVSIEEML 70 >gi|114883636|ref|YP_740326.1| XRE-family transcriptional regulator protein [Plasmid pLB1] gi|113734277|dbj|BAF30453.1| XRE-family transcriptional regulator protein [Plasmid pLB1] Length = 85 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 N K +TQ E+ R+G A S IS + G+ + + LA Sbjct: 7 KRTSPLMTQIGANIARELKNLGITQGELSERSGVAASHISYMVRGQGNPTLATLESLADV 66 Query: 73 LDTPLWKLL 81 + +LL Sbjct: 67 FRLSVVELL 75 >gi|78065731|ref|YP_368500.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77966476|gb|ABB07856.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 206 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++ D + ER+ R++R T + R+G ++S IS +E ++ Sbjct: 2 KESATAVADDTGINERI--ARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTA 59 Query: 64 DNMIILAHTLDTPLWKLL 81 + LA L L L Sbjct: 60 VVLDKLAAGLGVSLAGLF 77 >gi|30260593|ref|NP_842970.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47777813|ref|YP_022528.1| prophage lambdaba04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183444|ref|YP_026696.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] gi|65317858|ref|ZP_00390817.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|254686819|ref|ZP_05150677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724894|ref|ZP_05186677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A1055] gi|254738955|ref|ZP_05196657.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254756199|ref|ZP_05208228.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762018|ref|ZP_05213867.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30253961|gb|AAP24456.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47551518|gb|AAT35262.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177371|gb|AAT52747.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] Length = 114 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK LTQ+++ ++ ++S I ET + +ID ++I+A + + L+ Sbjct: 4 FGQILKKLRKSRGLTQEQLSHKLNLSRSQIKNWETDRYQPDIDTLVIIASFFNVSVDALI 63 >gi|332666442|ref|YP_004449230.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335256|gb|AEE52357.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 190 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE + +E+ +++ +S +E ++ ++ + ++ L+ PL +L+ Sbjct: 9 VGRKIRQLRKERGMNLQEVSDKSDITAGLLSRIENFRTLPSLPVLHNISMALNVPLAELV 68 >gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 158 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++R LTQ E G +++ +S E G ST++ + + + + + Sbjct: 1 MIGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|254719638|ref|ZP_05181449.1| hypothetical protein Bru83_08855 [Brucella sp. 83/13] gi|265984647|ref|ZP_06097382.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837728|ref|ZP_07470596.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264663239|gb|EEZ33500.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306407184|gb|EFM63395.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 470 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFTGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|257066786|ref|YP_003153042.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798666|gb|ACV29321.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 292 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 ER F IR+ L Q ++ ++ I LE G+ + ++D++I L+ D Sbjct: 4 ERKEFGKKLIEIRERKGLRQADVAELINLSERSIGRLERGEIESASVDSLIELSKIYDLD 63 Query: 77 LWKLLK 82 + L K Sbjct: 64 ILSLYK 69 >gi|227821998|ref|YP_002825969.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340998|gb|ACP25216.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 244 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 4 RKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R AI R + R RK+ +T ++ T + +S++E G Sbjct: 34 RVAPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVSDVAAATDISVGMLSKIENGN 93 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 ++ ++ + LA L P+ + Sbjct: 94 TSPSLTTLQTLARALGVPITSFFR 117 >gi|297204985|ref|ZP_06922381.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] gi|297149563|gb|EFH29860.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] Length = 136 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R+ L+Q+E+ +R ++ IS+ E G S +I+ + L+ L L+ Sbjct: 6 ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYLV 63 >gi|169334849|ref|ZP_02862042.1| hypothetical protein ANASTE_01255 [Anaerofustis stercorihominis DSM 17244] gi|169257587|gb|EDS71553.1| hypothetical protein ANASTE_01255 [Anaerofustis stercorihominis DSM 17244] Length = 371 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+E KLTQ+++ N G +++ +S+ ETG S +I+ + LA + L +LL Sbjct: 14 RREKKLTQEDVANYMGVSKASVSKWETGGSYPDIELLPKLATFYNISLDELL 65 >gi|118587212|ref|ZP_01544640.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432354|gb|EAV39092.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 199 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + R+E +TQ ++ ++ +S E GK+ ++D ++ L+ D L Sbjct: 8 MVFSEIISSKRRELGMTQDQVAELLHVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 67 Query: 80 LLK 82 L+K Sbjct: 68 LIK 70 >gi|86138335|ref|ZP_01056909.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85824860|gb|EAQ45061.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 207 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 5 KRDEPHLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 + ++ A ER R +RK T + N+ G A+S +S++E G+ + Sbjct: 6 PKSLITIARANGEEREAEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMS 65 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + + LA L + +L P Sbjct: 66 PTYEALKKLAVGLQISVPQLFTP 88 >gi|296117700|ref|ZP_06836284.1| putative transcription regulator [Corynebacterium ammoniagenes DSM 20306] gi|295969431|gb|EFG82672.1| putative transcription regulator [Corynebacterium ammoniagenes DSM 20306] Length = 121 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R R + +T +E+ + ++SELE G+ ++ + + + H L Sbjct: 28 PEPLLREALGLTLRAFRADKGVTLRELAASAHVSPGYLSELERGRKEVSSEMLAAVCHAL 87 Query: 74 DTPLWKLL 81 + + +L Sbjct: 88 EVSVSDVL 95 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE+ TQ+E+ NR G +++ ETG S +I+ + +A L L LL Sbjct: 4 GNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDTLL 62 >gi|257438852|ref|ZP_05614607.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] gi|257198667|gb|EEU96951.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] Length = 381 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R+ LTQ E+ + IS+ ET K +I + LA L + +L++ Sbjct: 7 GSTIRQLREAKGLTQAELAGTLSVSAKTISKWETAKGLPDISLLEPLAAALGVSVLELMQ 66 >gi|300022307|ref|YP_003754918.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299524128|gb|ADJ22597.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 218 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Query: 2 PRRKRDEPHLSD----AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P ++ P L+D A L + R EA LT ++ G + + +S +E G Sbjct: 13 PAARKPTPDLADNRDFANLPLESRIGAVIKRRRAEANLTLADLSAGAGLSSAMLSRIENG 72 Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82 + ++D + L + L L K Sbjct: 73 MAMASLDALERLCAAVGIGLGDLFK 97 >gi|261415339|ref|YP_003249022.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371795|gb|ACX74540.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 78 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R++ ++Q+++ N +++I +E G+ I+ I+L L+ + L Sbjct: 9 FGLLVKKAREKKCISQEQLGNAVEMHKNYIGMIERGERNISFRKAIVLIQYLNINIMDL 67 >gi|146281047|ref|YP_001171200.1| Cro/CI family transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569252|gb|ABP78358.1| transcriptional regulator, Cro/CI family [Pseudomonas stutzeri A1501] Length = 75 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +Q + +S++ +E G+ I ++ + +A TL+ Sbjct: 6 KALGGKIREQRKARGFSQDALALACKVDRSYMGRIERGEVNITVEKLYRIAWTLECDPKC 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|322376567|ref|ZP_08051060.1| conserved domain protein [Streptococcus sp. M334] gi|321282374|gb|EFX59381.1| conserved domain protein [Streptococcus sp. M334] Length = 73 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+ LTQK+I F S +++E G+ + D ++ L++ D LL Sbjct: 3 RRLRDLRKDHDLTQKQIAKILSFTNSAYAKIERGEHALTADVLVTLSNFYDVSTDYLL 60 >gi|332653789|ref|ZP_08419533.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516875|gb|EGJ46480.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 182 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N ++ RK L+Q+E+ + + +S+ E G S + +I LA LDT + L Sbjct: 1 MLSENLKHFRKAKGLSQEELAIKLHIVRQTVSKWEKGLSVPDSGMLIRLAEALDTSVTAL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 74 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ R +R +TQ ++ R G + + +E G+ + +++ +AH PL ++ + Sbjct: 9 NSLRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRYSPSLEMAFQIAHVFGVPLEEVFQ 68 >gi|261250781|ref|ZP_05943355.1| predicted transcriptional regulator [Vibrio orientalis CIP 102891] gi|260937654|gb|EEX93642.1| predicted transcriptional regulator [Vibrio orientalis CIP 102891] Length = 207 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGERIKTIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|254774923|ref|ZP_05216439.1| hypothetical protein MaviaA2_09650 [Mycobacterium avium subsp. avium ATCC 25291] Length = 189 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 LT +E+ R G S +S LE+GK + +D++ LA L +LL+P Sbjct: 23 GLTLQEVGARAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 72 >gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 290 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R E +T +E+ ++ G S +S++E G +I +N+ ++ + Sbjct: 5 KKALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSVSITSENLFAISEAFGVSVD 64 Query: 79 KLLK 82 LL Sbjct: 65 WLLT 68 >gi|167920201|ref|ZP_02507292.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 195 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R + + R+ ++S IS +E +S + LA+ L L L + Sbjct: 8 ARRVRALRDLRGYSLDALAERSKVSRSNISLIEHAQSNPTAVVLERLANALGVSLASLFE 67 >gi|154503168|ref|ZP_02040228.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] gi|153796162|gb|EDN78582.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] Length = 154 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 35/61 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ KL+Q+E+ ++ + IS E GK+ +++++++L+ +T L L+ Sbjct: 3 VGKQIKKFRQDLKLSQEELASKIFVTRQTISNWENGKNYPDVNSLVMLSQLFNTSLDILV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|124383500|ref|YP_001028680.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|124291520|gb|ABN00789.1| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 195 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R + + R+ ++S IS +E +S + LA+ L L Sbjct: 5 QLIARRVCALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|312862584|ref|ZP_07722825.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311101844|gb|EFQ60046.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 60 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ R LTQ+ + + G ++ IS +E G +D I + TLD Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISPIEKGDYNPTMDLYIAICKTLD 54 >gi|293607057|ref|ZP_06689400.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] gi|292814547|gb|EFF73685.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 11 LSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + R F R +R +T+K + TG ++ ++ LE G +I + Sbjct: 6 DAAPSEPRREAFLVALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVL 65 Query: 67 IILAHTLDTPLWKLL 81 + +A + L +L+ Sbjct: 66 LQIARAFNCALAELV 80 >gi|258651084|ref|YP_003200240.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554309|gb|ACV77251.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 162 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +L R R A+++ + + + G + ++S++E G + + + +A Sbjct: 6 NPVLTPVRDLGEFIREQRLAAQISLRGLAAKAGVSNPYLSQVERGLRRPSAEILAHIAQG 65 Query: 73 LDTPLWKLL 81 L + +L Sbjct: 66 LSISVETML 74 >gi|284034061|ref|YP_003383992.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813354|gb|ADB35193.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + L+ + R+G +++ IS++E G++ + L+ L L +L+ Sbjct: 9 LAATLQAARVDRNLSINALAERSGVSRAMISKIERGEAQPTAVLLGRLSGALGLTLSELV 68 >gi|227549953|ref|ZP_03980002.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077969|gb|EEI15932.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 436 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R++ LTQ ++ R G + S++++LE + + + ++ L+ Sbjct: 10 GGRIRTVRRDNDLTQMDMAQRLGISTSYLNQLENNQRPLTVSVLVELSRAFGLDP 64 >gi|224024015|ref|ZP_03642381.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM 18228] gi|224017237|gb|EEF75249.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM 18228] Length = 106 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN R LTQ+E+ R G ++ IS++E GK + I + + L +LK Sbjct: 12 IRNERLRKGLTQEELGERVGVGKAQISKIERGK-GLTIKTVTKVLDALGMSASVVLK 67 >gi|167561891|ref|ZP_02354807.1| DNA-binding regulatory protein [Burkholderia oklahomensis EO147] gi|167569142|ref|ZP_02362016.1| DNA-binding regulatory protein [Burkholderia oklahomensis C6786] Length = 81 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE ++Q+ + + +S + ++E G+ + N++ +A L +LL Sbjct: 17 LGAAIRARRKELVMSQEALADFAELDRSHMGKIERGERNVTFMNIVRIARALQLLPSELL 76 Query: 82 K 82 + Sbjct: 77 R 77 >gi|149916281|ref|ZP_01904801.1| hypothetical protein RAZWK3B_11842 [Roseobacter sp. AzwK-3b] gi|149809735|gb|EDM69587.1| hypothetical protein RAZWK3B_11842 [Roseobacter sp. AzwK-3b] Length = 113 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R++ N R R+ TQ + + + + E+E G+ T ++ + LA L Sbjct: 48 VNRLLNGENALRVYRELRGYTQAALAEKADVNRVTVGEIEIGRKTGSVKTLRKLADALAV 107 Query: 76 PLWKLL 81 + L+ Sbjct: 108 TVDDLI 113 >gi|29830326|ref|NP_824960.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29607437|dbj|BAC71495.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 285 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 DPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|266625750|ref|ZP_06118685.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288862345|gb|EFC94643.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 68 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN N RK L+Q+ + + G ++ IS+ ET ++ +I LA L + Sbjct: 1 MSLGNNLFNARKGKGLSQEVVAEKLGVSRQTISKWETDETLPDIQQSKKLAVLYGLTLDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] Length = 234 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +R++ + Q+E+ + G + S ISE E GK T + + +A + + Sbjct: 1 MFAENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYTPKLKTLNEIAKIFNVDIDD 60 Query: 80 LL 81 L+ Sbjct: 61 LM 62 >gi|227833331|ref|YP_002835038.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] gi|227454347|gb|ACP33100.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] Length = 124 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + +L R R R + +T +E+ + + ++SELE G+ ++ + Sbjct: 24 PAQSTRTPEPLL--REALGLTLRAFRADKGVTLRELASVARVSPGYLSELERGRKEVSSE 81 Query: 65 NMIILAHTLDTPLWKLL 81 + + H LD + +L Sbjct: 82 LLASVCHALDVSVSDVL 98 >gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] Length = 239 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N RKE +Q+E+ NR ++ +S+ E G +T ++ ++ L+ + +L+ Sbjct: 3 FYKNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTTPEMNKLMELSRIFQVSIDELV 62 >gi|163838971|ref|YP_001623376.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952447|gb|ABY21962.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 191 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + + + R R+ +LT + + TG + ++S +E ++ ++ + Sbjct: 2 KALPAEPNQGPVQ---IGSRIRAARQAQRLTIEHVAEATGLTKGFLSRVERDFTSPSVAS 58 Query: 66 MIILAHTLDTPLWKLL 81 ++ L L + L Sbjct: 59 LVTLCEVLAISIGDLF 74 >gi|160939733|ref|ZP_02087080.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] gi|158437167|gb|EDP14932.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] Length = 185 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK+ +Q+ + + ++ IS+ E G+S + +N+I L+ + Sbjct: 1 MTFGEKLKFLRKQKGFSQERLSQQLTVSRQAISKWELGESLPDTENVIQLSKLFSVSIDF 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|221064694|ref|ZP_03540799.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220709717|gb|EED65085.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + Q E + G A+S + ++E G+ + ++ ++ L +L+ Sbjct: 25 FGQAVRAARLAQGVAQDEFASMAGIARSHMGKIERGEHMPTLALILKISAALSISAAELM 84 >gi|291521205|emb|CBK79498.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 111 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 14 AILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ER + + R + Q E+ R + + IS +E G +++ I + Sbjct: 2 KNENERFVEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDV 61 Query: 73 LDTPLWKLL 81 LD LL Sbjct: 62 LDVTPDYLL 70 >gi|227486509|ref|ZP_03916825.1| helix-turn-helix [Anaerococcus lactolyticus ATCC 51172] gi|227235512|gb|EEI85527.1| helix-turn-helix [Anaerococcus lactolyticus ATCC 51172] Length = 291 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPL 77 R F IR+ L Q ++ + + +Q + LE G+ + ++D+++ L+ D + Sbjct: 5 RKEFGKKLIEIREIKGLRQADVADLSSLSQRTVGRLERGEIESASVDSLVELSKVYDIDI 64 Query: 78 WKLLK 82 L K Sbjct: 65 LSLYK 69 >gi|213019778|ref|ZP_03335581.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994608|gb|EEB55253.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ R TQK++ + G I + E G I+I + LA L T Sbjct: 14 KVVGQKVRSCRIAKGYTQKDLAKKIGTTYQVILQYEKGTRRISITKLYELAEALSTTARD 73 Query: 80 L 80 L Sbjct: 74 L 74 Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQ+++ ++ G I E E G++ ++++ + +A L + LL Sbjct: 167 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAKVLLINITDLL 226 >gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] Length = 509 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ + G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|163757965|ref|ZP_02165053.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162284254|gb|EDQ34537.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 231 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P K D ++ + + R EA +TQ + G ++ I LE G+ + Sbjct: 147 PPAKPDTTQTIFSVAADPKEIGAKLKAARLEAGVTQAVVAEAMGTKENAIRRLERGEHSP 206 Query: 62 NIDNMIILAHTLD 74 +ID + A + Sbjct: 207 SIDTIRKYAEAIG 219 >gi|114770344|ref|ZP_01447882.1| transcriptional regulator, putative [alpha proteobacterium HTCC2255] gi|114549181|gb|EAU52064.1| transcriptional regulator, putative [alpha proteobacterium HTCC2255] Length = 432 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RK +LTQK++ G + S+++ +E + I + +A L +L Sbjct: 5 LLGTRIRENRKALRLTQKDLAKVAGISASYLNLIEHNRRGIAGKTLNTIARALSVEPSEL 64 >gi|296156536|ref|ZP_06839374.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893135|gb|EFG72915.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 183 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK+ L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|77166000|ref|YP_344525.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|76884314|gb|ABA58995.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] Length = 165 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ N + R LTQ + + +QS+++ +E G+ + + +A L Sbjct: 92 VKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVKALKQIAKVLGV 151 Query: 76 PLWKLL 81 + L+ Sbjct: 152 DIDDLV 157 >gi|52081992|ref|YP_080783.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580] gi|52787379|ref|YP_093208.1| Slr [Bacillus licheniformis ATCC 14580] gi|319647856|ref|ZP_08002074.1| slr protein [Bacillus sp. BT1B_CT2] gi|52005203|gb|AAU25145.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580] gi|52349881|gb|AAU42515.1| Slr [Bacillus licheniformis ATCC 14580] gi|317390197|gb|EFV71006.1| slr protein [Bacillus sp. BT1B_CT2] Length = 152 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + R RK + ++ + G ++S++S++E G +++ + ++ L L + Sbjct: 1 MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|325264849|ref|ZP_08131577.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029838|gb|EGB91125.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 538 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK K++Q+++ ++ + + E G S ++DN++ +A D L L Sbjct: 1 MLADKIGKLRKLRKISQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAEYFDVSLDYL 60 Query: 81 L 81 + Sbjct: 61 I 61 >gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 199 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79 >gi|295103897|emb|CBL01441.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ + G ++ I+ +E G+ I+ + LD L +L Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELF 62 >gi|294790069|ref|ZP_06755253.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294481992|gb|EFG29735.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 88 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R AK+TQ+ + G ++ +S +E G++ + ++++ +A + L Sbjct: 4 LGEWVKEARTSAKMTQESLGFELGMTKANVSNMEKGRTNPSFEHILKIAQITNMEL 59 >gi|256160334|ref|ZP_05458027.1| hypothetical protein BcetM4_15110 [Brucella ceti M490/95/1] gi|256255538|ref|ZP_05461074.1| hypothetical protein BcetB_14887 [Brucella ceti B1/94] gi|261222746|ref|ZP_05937027.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998708|ref|ZP_06111265.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260921330|gb|EEX87983.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262553332|gb|EEZ09166.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 470 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] Length = 400 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK LTQ+++ ++ IS E G+ I + LA +L ++L Sbjct: 7 GKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEGYPEITLLPKLADSLGVTTDEIL 65 >gi|218670812|ref|ZP_03520483.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 96 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] Length = 169 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + E F + ++R++A +Q+++ + G ++ IS+ E + +DN++ L+ Sbjct: 35 DDAMDEATKFADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLSQI 94 Query: 73 LDTP 76 Sbjct: 95 YRVS 98 >gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 185 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum SI] gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 355 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A L+ +E+ NR G + IS+ E G + ++ LA L + Sbjct: 1 MVGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYF 60 Query: 81 LK 82 + Sbjct: 61 FR 62 >gi|187923443|ref|YP_001895085.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714637|gb|ACD15861.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 191 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ T E+ G ++ ++S++E G +T +I +++ +A L Sbjct: 16 GSKIRALRQRLSRTLDEVATTAGISKPFLSQVERGHATPSITSLVGIARALGV 68 >gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 106 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWK 79 + + +RK+ LT +++ +TG +S+I E+E G + + + ++A LD Sbjct: 4 LLGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKLTLIAKALDVTTEF 63 Query: 80 LL 81 L+ Sbjct: 64 LV 65 >gi|331270832|ref|YP_004397269.1| putative DNA-binding protein [Clostridium botulinum BKT015925] gi|329127550|gb|AEB77493.1| putative DNA-binding protein [Clostridium botulinum BKT015925] Length = 197 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 19 RMIFVNNFRNIR------KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + F + R + TQ+ + + +QS+I ++E+G++ + + +A Sbjct: 22 KKKFGQLLKEARNFKSDIIGKRYTQRMLADDINRSQSYIGDIESGRTYPSFSTLNDIAEA 81 Query: 73 LDTP 76 P Sbjct: 82 CGVP 85 >gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 174 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK L+Q E+ NR G + + E+G+ +I + +A+ L+ +L+ Sbjct: 8 GNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGVLNEIANNLNISPAELI 66 >gi|332855318|ref|ZP_08435823.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332871653|ref|ZP_08440126.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332727542|gb|EGJ58966.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332731343|gb|EGJ62638.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IRK +++Q E+ G + S++SE+E+GK ++ + + D P+ L+ Sbjct: 8 AIRKYHRISQTELSQSLGISNSYLSEIESGKKKPTLELLDKYSEYFDIPVSSLM 61 >gi|284802768|ref|YP_003414633.1| hypothetical protein LM5578_2524 [Listeria monocytogenes 08-5578] gi|284995910|ref|YP_003417678.1| hypothetical protein LM5923_2475 [Listeria monocytogenes 08-5923] gi|284058330|gb|ADB69271.1| hypothetical protein LM5578_2524 [Listeria monocytogenes 08-5578] gi|284061377|gb|ADB72316.1| hypothetical protein LM5923_2475 [Listeria monocytogenes 08-5923] Length = 83 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ IR + LTQKE+ + G A+ I ++E G+ +I+ + ++ L+T + + Sbjct: 5 FKLIRNKNGLTQKELAEKVGLAEISIRKIENGERDPSINTAVRISKILNTKMEIIF 60 >gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24] Length = 202 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ LT ++ TG + S +S LE+G+ + +++ LA PL +L+ Sbjct: 15 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 74 >gi|23502476|ref|NP_698603.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|148559184|ref|YP_001259476.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161619553|ref|YP_001593440.1| hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163843861|ref|YP_001628265.1| hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|254702330|ref|ZP_05164158.1| hypothetical protein Bsuib55_15923 [Brucella suis bv. 5 str. 513] gi|254704859|ref|ZP_05166687.1| hypothetical protein Bsuib36_13258 [Brucella suis bv. 3 str. 686] gi|254710644|ref|ZP_05172455.1| hypothetical protein BpinB_10311 [Brucella pinnipedialis B2/94] gi|254714828|ref|ZP_05176639.1| hypothetical protein BcetM6_16109 [Brucella ceti M644/93/1] gi|254717885|ref|ZP_05179696.1| hypothetical protein BcetM_16061 [Brucella ceti M13/05/1] gi|256032137|ref|ZP_05445751.1| hypothetical protein BpinM2_16082 [Brucella pinnipedialis M292/94/1] gi|256061658|ref|ZP_05451797.1| hypothetical protein Bneo5_15035 [Brucella neotomae 5K33] gi|256370026|ref|YP_003107537.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260565903|ref|ZP_05836373.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|261219732|ref|ZP_05934013.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318215|ref|ZP_05957412.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261322622|ref|ZP_05961819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325667|ref|ZP_05964864.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752894|ref|ZP_05996603.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755553|ref|ZP_05999262.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265989247|ref|ZP_06101804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23348469|gb|AAN30518.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|148370441|gb|ABQ60420.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336364|gb|ABX62669.1| Hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163674584|gb|ABY38695.1| Hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|256000189|gb|ACU48588.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260155421|gb|EEW90501.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|260924821|gb|EEX91389.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295312|gb|EEX98808.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261297438|gb|EEY00935.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261301647|gb|EEY05144.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261742647|gb|EEY30573.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745306|gb|EEY33232.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661444|gb|EEZ31705.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 470 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|68499972|gb|AAY97915.1| TrbA [Plasmid pMCBF1] gi|133711724|gb|ABO36544.1| TrbA protein [uncultured bacterium pMCBF6] Length = 104 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 31/48 (64%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +T++E+ R+G + S++S+L TGK ++ M +A LD PL LL+ Sbjct: 1 MTKQELSERSGVSISFLSDLTTGKGNPSLKVMEAVAKALDVPLPLLLE 48 >gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 153 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + +R+E ++Q ++ N G + +S E GK ++ LA + + L Sbjct: 2 NRIKQLREEKGVSQSDVANAVGITRQAVSLYEQGKRAPKLEIWQKLADLFEVSVPYL 58 >gi|237734898|ref|ZP_04565379.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382226|gb|EEO32317.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R +TQK++ + G ++ ++ +E G + I + L+ L +L Sbjct: 2 AKNLRIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDEL 61 Query: 81 L 81 Sbjct: 62 F 62 >gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava NJ9703] Length = 228 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ L+Q + G +Q+ I+ +E G N++ +A LD + L Sbjct: 7 RLREARRNKGLSQAGLSKLLGVSQASIAAIEAG-RNKRPTNLVSIAKALDVSPYWL 61 >gi|207723399|ref|YP_002253798.1| transcription regulator protein [Ralstonia solanacearum MolK2] gi|206588598|emb|CAQ35561.1| probable transcription regulator protein [Ralstonia solanacearum MolK2] Length = 96 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + N G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRAERGIAQESLANLAGIERSHVGKVERGEHMPTLAIIFRIAGALECSTAVLM 84 Query: 82 K 82 Sbjct: 85 T 85 >gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)] gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ LT ++ TG + S +S LE+G+ + +++ LA PL +L+ Sbjct: 14 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 73 >gi|88705426|ref|ZP_01103137.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88700516|gb|EAQ97624.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 198 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ L+Q + +Q +S LETG+S + D ++ LA ++ PL + Sbjct: 13 KQWRQRRNLSQLHLAETADISQRHLSWLETGRSQPSRDMVLKLADAMEVPLRE 65 >gi|319782137|ref|YP_004141613.1| hypothetical protein Mesci_2417 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168025|gb|ADV11563.1| Protein of unknown function DUF2083,transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 480 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ IF R IR LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 DQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILRLASVYKVD 62 Query: 77 LWKL 80 +L Sbjct: 63 PHEL 66 >gi|308181643|ref|YP_003925771.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047134|gb|ADN99677.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 223 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F++N + IR++ K+TQ +I + ++ IS E G+S +I ++ ++ D + +LL Sbjct: 3 FLDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|295109235|emb|CBL23188.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 91 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 32/59 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + IRK ++ ++ +TG ++S ++++E G + ++ + + L +L++P Sbjct: 11 NLKRIRKSKCMSLDQVAEQTGVSKSMLAQIERGTANPSLGVLGKITSGLRIEFQELIQP 69 >gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] Length = 509 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ + G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|241766564|ref|ZP_04764422.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241363184|gb|EER58771.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 299 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 12 SDAILRERM------IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 L R F + R R++ L+Q ++ + + +S +ETG++ + D Sbjct: 11 PRPTLPHRTGVAAPSSFGEHLRTWRQQRHLSQLDLAHEADISTRHVSFMETGRTNPSRDM 70 Query: 66 MIILAHTLDTPLWK 79 ++ L L PL + Sbjct: 71 VLRLCDRLCIPLRE 84 >gi|229058432|ref|ZP_04196816.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228719941|gb|EEL71531.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 404 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A+ L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIANKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|226948085|ref|YP_002803176.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843648|gb|ACO86314.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R ++KL+Q+++ + + IS E GK+ +I+++++L+ L L+K Sbjct: 5 KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63 >gi|226363378|ref|YP_002781160.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241867|dbj|BAH52215.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ T ++ TG + S +S LE G+ ++ M++LA PL +L+ Sbjct: 17 VGPRLKALRQQRGATLAQLSESTGISVSTLSRLEAGQRKPTLELMLLLARAHQLPLDELV 76 >gi|170760210|ref|YP_001786158.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407199|gb|ACA55610.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R ++KL+Q+++ + + IS E GK+ +I+++++L+ L L+K Sbjct: 5 KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63 >gi|170754897|ref|YP_001780428.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120109|gb|ACA43945.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R ++KL+Q+++ + + IS E GK+ +I+++++L+ L L+K Sbjct: 5 KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63 >gi|168187847|ref|ZP_02622482.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] gi|169294280|gb|EDS76413.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] Length = 64 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R E + QK++ G ++ ++S LE G+ + +I M ++ L+ + +L Sbjct: 2 GLKLKIKRIEKGIKQKDLAKEIGISRYYLSALENGRANNPSIPVMKKISEILEVTVQELF 61 >gi|168184026|ref|ZP_02618690.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|237794098|ref|YP_002861650.1| Cro/CI family transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|182672867|gb|EDT84828.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|229260454|gb|ACQ51487.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Ba4 str. 657] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R ++KL+Q+++ + + IS E GK+ +I+++++L+ L L+K Sbjct: 5 KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63 >gi|153938231|ref|YP_001390160.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934127|gb|ABS39625.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318252|gb|ADF98629.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R ++KL+Q+++ + + IS E GK+ +I+++++L+ L L+K Sbjct: 5 KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63 >gi|326442440|ref|ZP_08217174.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 196 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|326331215|ref|ZP_08197509.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] gi|325950985|gb|EGD43031.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] Length = 84 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R L+Q+E+ G QS I+ LE+G ID ++ +A LD Sbjct: 15 AAQVTEHRVARGLSQRELAELCGTTQSAIARLESGSRPPKIDTLLRVAAALD 66 >gi|311108201|ref|YP_003981054.1| hypothetical protein AXYL_05033 [Achromobacter xylosoxidans A8] gi|310762890|gb|ADP18339.1| helix-turn-helix family protein 11 [Achromobacter xylosoxidans A8] Length = 302 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 11 LSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + R F R +R +T+K + TG ++ ++ LE G +I + Sbjct: 6 DAAPSEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVL 65 Query: 67 IILAHTLDTPLWKLL 81 + +A + L +L+ Sbjct: 66 LQIARAFNCALAELV 80 >gi|255523832|ref|ZP_05390797.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255512535|gb|EET88810.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 184 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + +R E L+ + TG ++S + ++E ++ + + +A+ L + Sbjct: 6 FIIAENLKKLRVEKTLSLDNVSKLTGVSKSMLGQIERCEANPTVSTVWKIANGLKISCTQ 65 Query: 80 LL 81 L+ Sbjct: 66 LM 67 >gi|167756260|ref|ZP_02428387.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] gi|167703668|gb|EDS18247.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] Length = 71 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +TQK++ + G ++ ++ +E G + I + L+ L +L Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELF 62 >gi|50085608|ref|YP_047118.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49531584|emb|CAG69296.1| putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 198 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+E L E+ G +Q +S++E + + +++ + L L P+ L Sbjct: 15 GIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLF 73 >gi|37524226|ref|NP_927570.1| hypothetical protein plu0206 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783649|emb|CAE12501.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 100 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + ++ RK LTQ+++ + G + IS +E GKS N+D + A L Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAALG 89 >gi|90421626|ref|YP_529996.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90103640|gb|ABD85677.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisB18] Length = 305 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D+ S+ E++ + R R +++K + +G ++ +I++LE+GK ++I + Sbjct: 2 DQHPESETSFLEQL--GHRVRTTRALRGMSRKVLAKVSGVSERYIAQLESGKGNVSIVLL 59 Query: 67 IILAHTLDTPLWKLL 81 +A + + L+ Sbjct: 60 RRVAQAMGSHPEDLI 74 >gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 201 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+ T ++ G ++ + +E G + ++ ++ ++ L L L+ Sbjct: 13 GSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAANPSVGTLLRISDALGIGLPALV 71 >gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519] gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii] Length = 234 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M F N + +RK K+TQ+E+ + G ++ +S+ E +D +I + + Sbjct: 1 MSFGQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVMYPEMDKVIEICKLFSCSMD 60 Query: 79 KLLK 82 +L++ Sbjct: 61 ELIR 64 >gi|308187448|ref|YP_003931579.1| hypothetical protein Pvag_1947 [Pantoea vagans C9-1] gi|308057958|gb|ADO10130.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ L+Q+ + G S IS +E K + + + L L + Sbjct: 9 GRRLAQIRQTMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|291543704|emb|CBL16813.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 75 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + Q+E+ R G + I +E G + + + LD L L Sbjct: 4 KRMKIARIAHDMNQEELAKRVGVTRQTIGMIEQGNYNPTLKLCMAICDALDCTLDTLF 61 >gi|241894860|ref|ZP_04782156.1| possible antirepressor [Weissella paramesenteroides ATCC 33313] gi|241871868|gb|EER75619.1| possible antirepressor [Weissella paramesenteroides ATCC 33313] Length = 333 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 NN R E + E+ R+G + I E G++T ++ + L+ LD + +L Sbjct: 270 GNNVNKYRLERGYSMNELARRSGLYVNNIFNYENGRTTPRLETIFKLSDALDVSIEQL 327 >gi|258653034|ref|YP_003202190.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556259|gb|ACV79201.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 215 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER I R+ R+ A +T ++ R G +++ +S++E +++ ++ + LA LD P+ Sbjct: 31 ERAI-AAQVRSYRQAAGVTLADMAERVGISKAMLSKIENAQTSCSLTTLARLAAGLDIPV 89 Query: 78 WKLLK 82 L + Sbjct: 90 TALFR 94 >gi|227878075|ref|ZP_03996063.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256843789|ref|ZP_05549276.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849653|ref|ZP_05555085.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047762|ref|ZP_06020714.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381795|ref|ZP_06627770.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977080|ref|ZP_07788829.1| transcriptional regulator [Lactobacillus crispatus CTV-05] gi|227862335|gb|EEJ69866.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613694|gb|EEU18896.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256713769|gb|EEU28758.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260571967|gb|EEX28535.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921665|gb|EFD98692.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896408|gb|EFQ45473.1| transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 66 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK+ +++Q E+ R G A+ I+ +E K +++ + LAH L T L L Sbjct: 2 NRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLF 59 >gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 207 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M + S + L +R+ R +R L+ + NR+G ++S IS +E G+S+ Sbjct: 1 MKPKPATAAADSASDLNQRI--AGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGESS 58 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + LA L L L Sbjct: 59 PTAVVLEKLASGLGATLPSLF 79 >gi|160895910|ref|YP_001561492.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361494|gb|ABX33107.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + ++ G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLM 84 >gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec] gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec] Length = 366 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R L+Q ++ +G Q+ IS++E+G + D + +A TP Sbjct: 14 GERIRAARTLLGLSQGDLAEASGVGQTMISKIESGAKYPSDDLLDTIAAVTGTP 67 >gi|330502985|ref|YP_004379854.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917271|gb|AEB58102.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 190 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +RK K+T E+ R G + ++S++E G S + ++ +A LD P Sbjct: 22 LRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAIAEALDVP 69 >gi|313112793|ref|ZP_07798440.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624863|gb|EFQ08171.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 110 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +TQ+E+ R + + +E G+ +ID M+ + L L L+ Sbjct: 9 GKRIQQLRKANGMTQEEMAIRLNISDRHLGRIERGECAASIDLMVEVVVLLKANLDFLI 67 >gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 174 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R+R + I IR++ KL+Q++ G + +S E G S N Sbjct: 31 KRRRKVKDSNQNI-------AKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPN 83 Query: 63 IDNMIILAHTLDTPLWKLLK 82 I+ +I+++ D P+ ++LK Sbjct: 84 INTLILISEKFDIPVDEMLK 103 >gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 113 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 3 LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|228909127|ref|ZP_04072956.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200] gi|228850635|gb|EEM95460.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200] Length = 66 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R E TQ+++ R G ++ I+ +E K ++ +A PL ++ Sbjct: 1 MLNNRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEV 60 Query: 81 LK 82 + Sbjct: 61 FE 62 >gi|257414251|ref|ZP_04745748.2| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200672|gb|EEU98956.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 128 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H + + R + KLT E+ ++G + +I E+E + +++ + L Sbjct: 11 HDMAKSKKIDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLGQL 70 Query: 70 AHTLDTPLWKLLKP 83 L P Sbjct: 71 IRALHISADPFFYP 84 >gi|225619876|ref|YP_002721133.1| helix-turn-helix XRE-family like containing protein [Brachyspira hyodysenteriae WA1] gi|225214695|gb|ACN83429.1| HTH XRE, Helix-turn-helix XRE-family like containing protein [Brachyspira hyodysenteriae WA1] Length = 527 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 25 NFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N ++IR K KLTQ + G Q +IS LE + I +D + LA + +L K Sbjct: 5 NLKDIREKILKLTQSQFAKMLGVRQDYISRLERNANNITLDLLDKLAENTGLTIDELTK 63 >gi|199597611|ref|ZP_03211039.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258509756|ref|YP_003172507.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591418|gb|EDY99496.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257149683|emb|CAR88656.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259651020|dbj|BAI43182.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 189 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N+ + +R +LTQ ++ ++ ++ +S ETG+ ++ + LA + +L Sbjct: 5 VLGNHLKALRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDEL 64 Query: 81 LKP 83 L+P Sbjct: 65 LRP 67 >gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42] gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42] Length = 113 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 3 LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 184 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + L L Sbjct: 6 GTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 64 >gi|153836404|ref|ZP_01989071.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ3810] gi|260901662|ref|ZP_05910057.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ4037] gi|149750306|gb|EDM61051.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ3810] gi|308108916|gb|EFO46456.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ4037] gi|328470597|gb|EGF41508.1| transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 207 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + I ++ ++IR + +T +E RTG A+S +S++E + + Sbjct: 10 PSMTLAKEQNDQNIEPLKL--GQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISP 67 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 M LA L + +L +P Sbjct: 68 TFQAMQKLALGLQIDMPQLFEP 89 >gi|91225430|ref|ZP_01260552.1| transcriptional regulator, HTH_3 family protein [Vibrio alginolyticus 12G01] gi|91189793|gb|EAS76066.1| transcriptional regulator, HTH_3 family protein [Vibrio alginolyticus 12G01] Length = 207 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314] gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314] Length = 169 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTL 73 R IRK +Q+E+ +++ IS LE ++ + + L+ L Sbjct: 52 HTLGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWAL 111 Query: 74 DTPLWKLL 81 D P LL Sbjct: 112 DVPPAALL 119 >gi|83855136|ref|ZP_00948666.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842979|gb|EAP82146.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 188 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 DAIL + + R L+ + +G ++S +S++E G+S+ I + L Sbjct: 5 PDAILTQ---LPARLKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTR 61 Query: 72 TLDTPLWKLL 81 L LL Sbjct: 62 ALQVDFAGLL 71 >gi|325840355|ref|ZP_08167002.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] gi|325490340|gb|EGC92667.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] Length = 143 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +RK + TQ+ + + ++ I++ E+G++T ++++++ + + L L Sbjct: 1 MISMNLRRLRKIHQYTQENVAEKLNVSRQSIAKWESGETTPDLEHLLKFSKLYNVSLDNL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|317131818|ref|YP_004091132.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469797|gb|ADU26401.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 186 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + ++ R + + +EI + + S IS +E GK++ N+ + + L+ P++ L Sbjct: 5 LIGQTIKDRRIKMGKSIREIASACEISPSTISMIENGKTSPNLLTLKAVCDALNIPVFSL 64 Query: 81 L 81 L Sbjct: 65 L 65 >gi|257484219|ref|ZP_05638260.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008290|gb|EGH88347.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 150 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F R IR LTQK++ A S +S+LE+GK+T + + LA +LD Sbjct: 4 REGFAAALRLIRVTKGLTQKDLAGP--VAASHVSQLESGKTTPTVKVVGELAQSLDLSPS 61 Query: 79 KLL 81 LL Sbjct: 62 ALL 64 >gi|224542833|ref|ZP_03683372.1| hypothetical protein CATMIT_02025 [Catenibacterium mitsuokai DSM 15897] gi|224524245|gb|EEF93350.1| hypothetical protein CATMIT_02025 [Catenibacterium mitsuokai DSM 15897] Length = 177 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LT +E+ NR+ ++ ++S++E ++ ++ + + L T L Sbjct: 3 LGRKIKQLRLANDLTLEELANRSELSKGFLSQVERNLTSPSVATLDDILEALGTNLHDFF 62 >gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK+ +TQ+E+ + ++ I LE G+ +I ++ + + ++ Sbjct: 3 NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIF 60 >gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium kroppenstedtii DSM 44385] Length = 498 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 R+ + +RKE +L+Q + + G + S+++++E + + + H Sbjct: 7 KEGPSSRVFVGTRLKQLRKERELSQATLAHALGLSASYVNQIENDSRPLTSSVLRKITHV 66 Query: 73 LDT 75 Sbjct: 67 FGI 69 >gi|228907976|ref|ZP_04071826.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228851642|gb|EEM96446.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 184 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|229159135|ref|ZP_04287181.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] gi|228624336|gb|EEK81117.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] Length = 274 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++R K+TQ+++ ++ ++ IS+ E GKS ++ N++ L++ + + LLK Sbjct: 57 GKKIKHLRLINKMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDSLLK 116 >gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] Length = 260 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE L+Q+ + ++ G + +S+ E + + ++ L+ LL Sbjct: 3 FGEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQGYPETEKILQLSQLFGVSTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus NA1000] gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus NA1000] Length = 480 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L +++ + +R++ +TQ + G + S+++ LE + + ++ LA Sbjct: 4 LEKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQRPVTAQILLRLA 63 Query: 71 HTLDTPLWKL 80 D L L Sbjct: 64 DAYDLDLRSL 73 >gi|239814445|ref|YP_002943355.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801022|gb|ACS18089.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 284 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + R F + R+ R +L+Q ++ + +S +ETG++ + + ++ Sbjct: 10 HSTAAGQPGARDPFGAHLRHWRTRRRLSQLDLAQEAEVSTRHLSYVETGRAAPSREMVLR 69 Query: 69 LAHTLDTPLWK 79 LA LD PL + Sbjct: 70 LAERLDVPLRE 80 >gi|207857403|ref|YP_002244054.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206709206|emb|CAR33539.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 231 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + E+ G + IS LETGK + + LA L + +L Sbjct: 4 GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLSVDIAELF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|149924529|ref|ZP_01912888.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149814622|gb|EDM74203.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 135 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RN+R LTQ+ + R + I LE G + ++ ++ LA L LL Sbjct: 23 FGKHLRNLRNARGLTQEVLAERANLSSDTIRRLEHGTFSPTLNTLLRLASGYGLRLSTLL 82 >gi|217974624|ref|YP_002359375.1| helix-turn-helix domain-containing protein [Shewanella baltica OS223] gi|217499759|gb|ACK47952.1| helix-turn-helix domain protein [Shewanella baltica OS223] gi|319428169|gb|ADV56243.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 367 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F RK A L+ + N G + + I + E G + + N++ LA LD Sbjct: 1 MFAERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|119964507|ref|YP_946525.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119951366|gb|ABM10277.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 495 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 4 RKRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+ P L A + + R++RK+A LT ++ G A S +S +E K Sbjct: 8 REVASPSLPAASPELDVISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENAKREPK 67 Query: 63 IDNMIILAHTLDTPLWKLL 81 + + LA +L+ + +LL Sbjct: 68 LGLLQQLAASLNVTIDQLL 86 >gi|42780878|ref|NP_978125.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736799|gb|AAS40733.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168] gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY] gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5] gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis] gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis] gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5] Length = 111 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R+E LTQ+ + G + S+++ +E + + D ++ LA + + +L Sbjct: 29 LGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQRPLTADLLLRLARSYKLDMSEL 87 >gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 75 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+++ + G ++ I+ +E G I + + + LD L +L Sbjct: 7 RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELF 63 >gi|307727212|ref|YP_003910425.1| Cupin 2 conserved barrel domain-containing protein [Burkholderia sp. CCGE1003] gi|307587737|gb|ADN61134.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1003] Length = 190 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 14 VGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67 >gi|269127509|ref|YP_003300879.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312467|gb|ACY98841.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 127 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R +R T +E+ + ++SE+E G+ + + + + L PL Sbjct: 5 RQLLGDVLRQLRLRQGRTLREVSAAARVSLGYLSEVERGQKEASSELLASICKALGVPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 HVLR 68 >gi|240112583|ref|ZP_04727073.1| putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240121380|ref|ZP_04734342.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240123181|ref|ZP_04736137.1| putative phage associated protein [Neisseria gonorrhoeae PID332] gi|254493390|ref|ZP_05106561.1| predicted protein [Neisseria gonorrhoeae 1291] gi|268598654|ref|ZP_06132821.1| predicted protein [Neisseria gonorrhoeae MS11] gi|268601681|ref|ZP_06135848.1| predicted protein [Neisseria gonorrhoeae PID18] gi|268603326|ref|ZP_06137493.1| predicted protein [Neisseria gonorrhoeae PID1] gi|268681806|ref|ZP_06148668.1| predicted protein [Neisseria gonorrhoeae PID332] gi|268684027|ref|ZP_06150889.1| predicted protein [Neisseria gonorrhoeae SK-92-679] gi|291044182|ref|ZP_06569894.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398775|ref|ZP_06642943.1| phage associated protein [Neisseria gonorrhoeae F62] gi|226512430|gb|EEH61775.1| predicted protein [Neisseria gonorrhoeae 1291] gi|268582785|gb|EEZ47461.1| predicted protein [Neisseria gonorrhoeae MS11] gi|268585812|gb|EEZ50488.1| predicted protein [Neisseria gonorrhoeae PID18] gi|268587457|gb|EEZ52133.1| predicted protein [Neisseria gonorrhoeae PID1] gi|268622090|gb|EEZ54490.1| predicted protein [Neisseria gonorrhoeae PID332] gi|268624311|gb|EEZ56711.1| predicted protein [Neisseria gonorrhoeae SK-92-679] gi|291011899|gb|EFE03892.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610777|gb|EFF39884.1| phage associated protein [Neisseria gonorrhoeae F62] Length = 153 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 2 PRRK----RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 PRRK R ++D I F ++R + TQ E+ G Q ++S +E Sbjct: 59 PRRKAAMDRAAARIADKIAL--KAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENS 116 Query: 58 KSTINIDNMIILAHTLDTPLWKL 80 K ++ + LA+ L ++ Sbjct: 117 KQSLQDKTVQKLANALGVSPLEV 139 >gi|188591670|ref|YP_001796269.1| hypothetical protein pRALTA_0436 [Cupriavidus taiwanensis] gi|170939065|emb|CAP64081.1| Conserved hypothetical protein [Cupriavidus taiwanensis LMG 19424] Length = 195 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P + R R R+ + E+ R G +++ IS++E G+++ + Sbjct: 11 SPVDPTGAISAR------VRIERESRGWSMGELAERAGVSKAMISKIERGEASPTATVLG 64 Query: 68 ILAHTLDTPLWKLL 81 L+ L LL Sbjct: 65 RLSGAFGLQLSMLL 78 >gi|91779152|ref|YP_554360.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91691812|gb|ABE35010.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 189 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK+ L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 11 VATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|29834073|ref|NP_828707.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29611198|dbj|BAC75242.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 417 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAH 71 + + +F + +RKE + TQ E G SW+S++E G + +D + +A Sbjct: 6 KDVDPQDRVFGQRVQKLRKEQRRTQAEFAAALGKTSSWMSQVERGIQPVQRMDLLQQIAD 65 Query: 72 TLDTPLWKL 80 L + +L Sbjct: 66 ELGVSVQQL 74 >gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 158 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++F + +RKEA LTQK+I + G Q + E+GK + + A + + Sbjct: 38 LMFPERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDY 97 Query: 80 LL 81 LL Sbjct: 98 LL 99 >gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22] gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 198 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE + T + TG + S +S LE+G +++ ++ +A PL +L+ Sbjct: 18 VGPRLRRIRKEREATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELI 77 >gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] Length = 509 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|46915658|emb|CAG22430.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 114 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR+ + Q E+ + ++S++SE+E+GK +N++ + ++ D P+ L+ Sbjct: 19 LKIIRQFHNVKQVELAQKLNLSKSYLSEIESGKKPVNLELLDKYSNLFDIPVSSLV 74 >gi|78064026|ref|YP_373934.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971911|gb|ABB13290.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 203 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|163943401|ref|YP_001642631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|228925002|ref|ZP_04088132.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|163865598|gb|ABY46656.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228834665|gb|EEM80174.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 66 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R E TQ+++ R G ++ I+ +E K ++ +A PL ++ Sbjct: 1 MLNNRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEV 60 Query: 81 LK 82 + Sbjct: 61 FE 62 >gi|326333336|ref|ZP_08199583.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] gi|325948980|gb|EGD41073.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R LTQ+ + R+G +Q +S E G + + + + LD L Sbjct: 7 GSLLKAARVARGLTQETLARRSGTSQPSLSAYERGTKSPTLAVLERILRCLDFEL 61 >gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces oris K20] Length = 146 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +RK+ + TQ+ + N+ G ++ I++ E +I + I LA D + L Sbjct: 1 MISSNIAALRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCIRLAQAFDVAIDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|300173268|ref|YP_003772434.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887647|emb|CBL91615.1| Transcriptional regulator, XRE family,putative [Leuconostoc gasicomitatum LMG 18811] Length = 71 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +RKE K++Q++ G + IS LE G+ +I + +A + + Sbjct: 3 NNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYNPSILLAMKIARYFGKSVENIF 60 >gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] Length = 209 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 EP +D R +R T + R G ++S IS +E G ++ + Sbjct: 5 AEPSTADTDAGVNERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAASPTAAVL 64 Query: 67 IILAHTLDTPLWKLL 81 LA L L L Sbjct: 65 DKLAAGLGVSLASLF 79 >gi|228995259|ref|ZP_04154973.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] gi|228764497|gb|EEM13332.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] Length = 142 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+++ + G + + + E+ KS +IDN+I+L+ + + +L+ Sbjct: 3 LGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|227551898|ref|ZP_03981947.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257895511|ref|ZP_05675164.1| transcriptional regulator [Enterococcus faecium Com12] gi|227178970|gb|EEI59942.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257832076|gb|EEV58497.1| transcriptional regulator [Enterococcus faecium Com12] Length = 370 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + N N+RK+ +TQ+ + G ++ +S+ ETG+S ++ + LA D + Sbjct: 2 EELSLSKNVANLRKKKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|210610650|ref|ZP_03288550.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] gi|210152372|gb|EEA83378.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] Length = 124 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R +A TQ++ G + ++ ++E G+ +++ ++ + L+ + LL Sbjct: 25 GKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLVHVYEKLNIDINYLLT 84 >gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] Length = 234 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + RK+A +TQ+E+ R ++ IS+ E+G + ++ ++ L + L+ Sbjct: 4 FSENLQFYRKKADMTQEELAERMEVSRQTISKWESGATYPEMEKILQLCEMFRCDMDTLI 63 Query: 82 K 82 + Sbjct: 64 R 64 >gi|159038191|ref|YP_001537444.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917026|gb|ABV98453.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 219 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ LT ++ TG ++S +S LE G+ ++ ++ LA + PL L+ Sbjct: 12 VGPRLRALRRHRGLTLADVSTTTGVSESTLSRLEGGQRRATLELLLPLARIYNVPLDDLV 71 >gi|20809100|ref|NP_624271.1| helix-turn-helix [Thermoanaerobacter tengcongensis MB4] gi|20517778|gb|AAM25875.1| Helix-turn-helix [Thermoanaerobacter tengcongensis MB4] Length = 321 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F +NIRK L+Q ++ + ++ + ++E GK + + +L+H L + Sbjct: 9 EAFGEELKNIRKSLGLSQSDVAEQAFISRDTLRKIENGKVIPKQETLDLLSHLYKKDLNE 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|94310423|ref|YP_583633.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|163856492|ref|YP_001630790.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|93354275|gb|ABF08364.1| putative DNA-binding transcriptional regulator [Cupriavidus metallidurans CH34] gi|163260220|emb|CAP42522.1| predicted transcriptional regulator [Bordetella petrii] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + ++ G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLM 84 >gi|332716566|ref|YP_004444032.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063251|gb|ADY66941.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 225 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 5 KRDEPHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 A+ R M + R RK+ +T ++ + TG + +S++E G Sbjct: 15 PALLSQDPHAVREPRVNNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNI 74 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + ++ + L+ L P+ + Sbjct: 75 SPSLTTLQTLSKALGVPITAFFR 97 >gi|296393353|ref|YP_003658237.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180500|gb|ADG97406.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 101 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R T +E+ NR + ++SE+E G+ + + + + LD P+ Sbjct: 6 REALGASLRQLRLGQHRTLREVSNRASMSLGYLSEIERGQKEASSELLAAICGALDVPVP 65 Query: 79 KLLK 82 +L+ Sbjct: 66 DVLR 69 >gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] Length = 329 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+ A L+Q+E+ ++ +S +E ++ + I +A L + +L Sbjct: 3 NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVVPSVSHAIRIARALGCSVEELF 60 >gi|282865544|ref|ZP_06274595.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559588|gb|EFB65139.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 285 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ Sbjct: 2 PTNVNPTVRRRRL-GQELRRLREIKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRD 60 Query: 69 LAHTLDTP 76 L + Sbjct: 61 LCGVYEVE 68 >gi|289579492|ref|YP_003478119.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289529205|gb|ADD03557.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 320 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F +NIRK L+Q ++ ++ ++ + ++E GK + + L+H L + Sbjct: 9 EAFGEELKNIRKSLGLSQSDVAEQSFISRDTLRKIENGKVIPKQETLDFLSHLYKKDLNE 68 Query: 80 LL 81 LL Sbjct: 69 LL 70 >gi|253682587|ref|ZP_04863384.1| helix-turn-helix domain protein [Clostridium botulinum D str. 1873] gi|253562299|gb|EES91751.1| helix-turn-helix domain protein [Clostridium botulinum D str. 1873] Length = 184 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N + IR + ++ + TG +++ + ++E G+S + + +A L Sbjct: 7 IIGINLKTIRTQKNMSLDTVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVS 62 >gi|150376382|ref|YP_001312978.1| hypothetical protein Smed_4240 [Sinorhizobium medicae WSM419] gi|150030929|gb|ABR63045.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 472 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ R++R +LTQ + R G + S+++++E + ++ ++ LA + Sbjct: 5 KLYIGRKVRDLRDGKRLTQAQFAERIGISTSYLNQIENNQRPVSASVLLALAEKFQIDIA 64 Query: 79 KL 80 +L Sbjct: 65 EL 66 >gi|110677608|ref|YP_680615.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453724|gb|ABG29929.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 187 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R+ L+ + +G ++S +S++E G+S+ I + L L LL Sbjct: 15 RLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 71 >gi|329117134|ref|ZP_08245851.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907539|gb|EGE54453.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 120 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ +F N + +R + K+ Q E+ G + S ISE E GK T D + +A+ Sbjct: 4 QKSLFARNLKYLRLKNKMEQLELAEYLGRKSSSSISEWEKGKYTPKTDILGKIANLFKVS 63 Query: 77 LWKLLK 82 L +L++ Sbjct: 64 LTELME 69 >gi|296329582|ref|ZP_06872068.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672779|ref|YP_003864450.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153325|gb|EFG94188.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411022|gb|ADM36140.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 72 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I+ R RK TQ+ G + S + E+E G + + A L+ Sbjct: 2 EAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQGAADVLNISA 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 DELAPP 67 >gi|228918176|ref|ZP_04081680.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841456|gb|EEM86595.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 184 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|227113678|ref|ZP_03827334.1| putative regulatory protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R E +TQ+ + N G QS+++++E G+ +++ + +AH L +L+ Sbjct: 29 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDASTVLE 85 >gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] Length = 194 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R RK+ +T + + TG + ++S LE K++ N+D++ + LD Sbjct: 8 GERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKTSPNVDSLARICEALDI 60 >gi|194292664|ref|YP_002008571.1| phage related repressor gp68 [Cupriavidus taiwanensis LMG 19424] gi|193226568|emb|CAQ72519.1| putative Gp68, phage related putative repressor, similar to bacteriophage phi Gp68 [Cupriavidus taiwanensis LMG 19424] Length = 132 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+ L ++ R G +++IS +ETG+ D + LA L+ P+ L + Sbjct: 71 LRAWRRFRGLPSDQLAKRVGVTRAYISMIETGRRRPAADLLHRLARELEIPVCALAR 127 >gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99] gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99] Length = 184 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + IRK+ L+Q+E+ R G S IS +E + +++++ + L L Sbjct: 6 GASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSVSPSVNSLKKVLSGLSLSLVDFF 64 >gi|332877403|ref|ZP_08445150.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684509|gb|EGJ57359.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 100 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ K+TQ E+ + G +++IS +E G + + L +++ Sbjct: 38 VGQMISDARKQEKMTQSELAEKVGTNKTYISRIEKGVIEPGVGLFFRIIDALGLK-VEIV 96 Query: 82 KP 83 KP Sbjct: 97 KP 98 >gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 69 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ L+Q ++ + G A+ I+ +E K +++ I LA L+T L L Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLF 59 >gi|209515043|ref|ZP_03263912.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504669|gb|EEA04656.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 183 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK+ L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|168698267|ref|ZP_02730544.1| hypothetical protein GobsU_02017 [Gemmata obscuriglobus UQM 2246] Length = 75 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R +A++TQ+ + + + ++S LE + T I+ I L + ++ Sbjct: 1 MFGKLLKEARLKAEMTQELLAVKAELTREYVSLLERDQRTPTIEVFIRLVRAVGLSPAEV 60 Query: 81 L 81 + Sbjct: 61 I 61 >gi|163733254|ref|ZP_02140698.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161393789|gb|EDQ18114.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 187 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R+ L+ + +G ++S +S++E G+S+ I + L L LL Sbjct: 15 RLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 71 >gi|159186071|ref|NP_356428.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141205|gb|AAK89213.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 208 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 9 PHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 A+ R M + R RK+ +T ++ + TG + +S++E G + ++ Sbjct: 2 SQDPHAVREPRVNNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSL 61 Query: 64 DNMIILAHTLDTPLWKLLK 82 + L+ L P+ + Sbjct: 62 TTLQTLSKALGVPITAFFR 80 >gi|125624166|ref|YP_001032649.1| hypothetical protein llmg_1347 [Lactococcus lactis subsp. cremoris MG1363] gi|125624178|ref|YP_001032661.1| hypothetical protein llmg_1359 [Lactococcus lactis subsp. cremoris MG1363] gi|124492974|emb|CAL97937.1| hypothetical protein llmg_1347 [Lactococcus lactis subsp. cremoris MG1363] gi|124492986|emb|CAL97949.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070943|gb|ADJ60343.1| hypothetical protein LLNZ_06965 [Lactococcus lactis subsp. cremoris NZ9000] gi|300070955|gb|ADJ60355.1| hypothetical protein LLNZ_07025 [Lactococcus lactis subsp. cremoris NZ9000] Length = 94 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRN----------IRKEAKLTQKEIRNRTGFAQSW 50 MP K D+ + + ER V F +R+ TQKE+ G +QS Sbjct: 1 MPSIKFDDFYHNYTKSPERKAAVEQFEEQLKASVLLSELREREDYTQKELAELAGTSQST 60 Query: 51 ISELETGKSTINIDNMIILAHTLDTPL 77 ++ +E+G + D + + + + L Sbjct: 61 VARIESGTMNVTFDTLAHIVNAMGYKL 87 >gi|52079411|ref|YP_078202.1| hypothetical protein BL02899 [Bacillus licheniformis ATCC 14580] gi|52784771|ref|YP_090600.1| hypothetical protein BLi00999 [Bacillus licheniformis ATCC 14580] gi|319646808|ref|ZP_08001037.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52002622|gb|AAU22564.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52347273|gb|AAU39907.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391396|gb|EFV72194.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 65 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E LTQ ++ R + I +E K + I +A LD L L Sbjct: 3 NRVKLARIEKSLTQAQLAERVNVTRQTIGLIEKNKYNPTLQLCIAIAKALDKTLDDLF 60 >gi|319440906|ref|ZP_07990062.1| putative Xre family DNA-binding protein [Corynebacterium variabile DSM 44702] Length = 174 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R +A L+ E R G +S +S LE+G +++ + LA + PL Sbjct: 2 GSALRAERDKAGLSLTEAAARAGIGKSTLSVLESGAGNPSVETLWSLASVYNVPL 56 >gi|303241220|ref|ZP_07327727.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591231|gb|EFL60972.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 71 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R E K+TQK++ ++ + IS+ E G +I ++ L+ L + +LL Sbjct: 6 VGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGNPDISLILKLSDILGIDVRELL 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|291448847|ref|ZP_06588237.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291351794|gb|EFE78698.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 187 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ LT + R+G + ++S++E ++ ++ ++ +A L T +LL Sbjct: 13 LGNAVRRRRRALDLTLASVAERSGLSVPFLSQIENDRARPSMRSLQRIADALRTTAVELL 72 >gi|222825161|dbj|BAH22318.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 133 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R +Q+++ + G + I ETG+ + +D + LA L + Sbjct: 9 KQIGERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEALSVDM 66 >gi|218133915|ref|ZP_03462719.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC 43243] gi|217991290|gb|EEC57296.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC 43243] Length = 128 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H + + R + KLT E+ ++G + +I E+E + +++ + L Sbjct: 11 HDMAKSKKIDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLGQL 70 Query: 70 AHTLDTPLWKLLKP 83 L P Sbjct: 71 IRALHISADPFFYP 84 >gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 327 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI +RK+ +Q+E+ + ++ +S+ E+ S +++ +I LA + Sbjct: 1 MILAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSIPDLNKIIKLADIFEVSTDF 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|58040894|ref|YP_192858.1| putative transcriptional regulator [Gluconobacter oxydans 621H] gi|58003308|gb|AAW62202.1| Putative transcriptional regulator [Gluconobacter oxydans 621H] Length = 149 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 12/85 (14%) Query: 5 KRDEPHLSDAILRERMIFV------------NNFRNIRKEAKLTQKEIRNRTGFAQSWIS 52 R+ +F + + R K+ Q + TG + ++S Sbjct: 10 PETWHVKQKVSARDPEVFGACDNQAMNETYQSRLKKARIHQKIQQADAAAVTGKGRPYLS 69 Query: 53 ELETGKSTINIDNMIILAHTLDTPL 77 E E GK +++ ++ LA D L Sbjct: 70 EFENGKKPGSLEVVLPLAELYDISL 94 >gi|115523415|ref|YP_780326.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517362|gb|ABJ05346.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 480 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ FR +R++ L+Q ++ G + S+I+ +E + + ++ LA D L Sbjct: 7 KKLFVGPRFRRLRQQMGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAENYDLDL 66 Query: 78 WKL 80 L Sbjct: 67 RDL 69 >gi|302535016|ref|ZP_07287358.1| DNA-binding protein [Streptomyces sp. C] gi|302443911|gb|EFL15727.1| DNA-binding protein [Streptomyces sp. C] Length = 294 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R++ +T +++ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCEV 64 Query: 73 LDTPLWKLL 81 + +L+ Sbjct: 65 YEVEDPRLV 73 >gi|260774236|ref|ZP_05883151.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260611197|gb|EEX36401.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 510 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63 +S +++R+ RN+RK LT +++ R + S++S +E GK ++ Sbjct: 3 ISKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSV 62 Query: 64 DNMIILAHTLDT-PLWKL 80 + + ++A P W L Sbjct: 63 EMLEVIAEVFQKDPRWFL 80 >gi|257792684|ref|YP_003183290.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476581|gb|ACV56901.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 70 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER I R R+ ++ + G +++ ++E G+ I I+N+ +A L Sbjct: 3 ERKIKLGQRIRKEREAQGISLRRFALMIGVGHTYLVDVENGRRNIGIENLCRIADGLGIR 62 Query: 77 LWKL 80 + +L Sbjct: 63 VSEL 66 >gi|238917513|ref|YP_002931030.1| hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] gi|238872873|gb|ACR72583.1| Hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] Length = 107 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R LTQ+++ +IS +E G++ + + + A L L Sbjct: 5 LGAKVKKLRIAHGLTQEDVAKALEVTPGYISNVENGRNLMTLRMLSYYAELTGVSLDYL 63 >gi|228933066|ref|ZP_04095929.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826667|gb|EEM72438.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|228945385|ref|ZP_04107740.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814357|gb|EEM60623.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229090748|ref|ZP_04221981.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|228692690|gb|EEL46416.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229121334|ref|ZP_04250565.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228662179|gb|EEL17788.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|225863642|ref|YP_002749020.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789107|gb|ACO29324.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|254391929|ref|ZP_05007122.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811944|ref|ZP_06770587.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197705609|gb|EDY51421.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294324543|gb|EFG06186.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 287 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 D R F R +R E TQ+E+ R G + + IS +ETG+ Sbjct: 19 DPEKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPT 68 >gi|196038875|ref|ZP_03106182.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228926817|ref|ZP_04089885.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|301053321|ref|YP_003791532.1| transcriptional regulator [Bacillus anthracis CI] gi|196030020|gb|EDX68620.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228832930|gb|EEM78499.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375490|gb|ADK04394.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|196033371|ref|ZP_03100783.1| DNA-binding protein [Bacillus cereus W] gi|195993805|gb|EDX57761.1| DNA-binding protein [Bacillus cereus W] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|218902898|ref|YP_002450732.1| DNA-binding protein [Bacillus cereus AH820] gi|228914360|ref|ZP_04077975.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|218536358|gb|ACK88756.1| DNA-binding protein [Bacillus cereus AH820] gi|228845354|gb|EEM90390.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|149183828|ref|ZP_01862225.1| DNA-binding protein [Bacillus sp. SG-1] gi|148848458|gb|EDL62711.1| DNA-binding protein [Bacillus sp. SG-1] Length = 123 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +R+E ++Q+E+ R ++ I + E+G + ++ L+ LD P ++L Sbjct: 4 FGQNLKLLREERNISQEELAMRARLGRTTIEKYESGSQIPDTPTILKLSTVLDVPASEML 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|49477327|ref|YP_035899.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477214|ref|YP_894365.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|229183977|ref|ZP_04311192.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|49328883|gb|AAT59529.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416439|gb|ABK84858.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228599502|gb|EEK57107.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|52143677|ref|YP_083152.1| transcriptional regulator [Bacillus cereus E33L] gi|51977146|gb|AAU18696.1| transcriptional regulator [Bacillus cereus E33L] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118463985|ref|YP_883804.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|254777113|ref|ZP_05218629.1| transcriptional regulator, XRE family protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41398898|gb|AAS06517.1| hypothetical protein MAP_3967 [Mycobacterium avium subsp. paratuberculosis K-10] gi|48928160|gb|AAT47758.1| possible transcriptional regulator [Mycobacterium avium] gi|118165272|gb|ABK66169.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length = 138 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 30/58 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+ R+ A+++ +++ ++G + ++S++E G + D + +A L L Sbjct: 23 GSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVL 80 >gi|30261788|ref|NP_844165.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527021|ref|YP_018370.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184620|ref|YP_027872.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65319065|ref|ZP_00392024.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869450|ref|ZP_02214109.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633384|ref|ZP_02391709.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638745|ref|ZP_02397020.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686089|ref|ZP_02877311.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706409|ref|ZP_02896869.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650447|ref|ZP_02933414.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566266|ref|ZP_03019184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815444|ref|YP_002815453.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604650|ref|YP_002866175.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683285|ref|ZP_05147146.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723868|ref|ZP_05185654.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734638|ref|ZP_05192350.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741048|ref|ZP_05198736.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755290|ref|ZP_05207324.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759827|ref|ZP_05211851.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256016|gb|AAP25651.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502169|gb|AAT30845.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178547|gb|AAT53923.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714890|gb|EDR20408.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513209|gb|EDR88580.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531422|gb|EDR94100.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128507|gb|EDS97374.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669786|gb|EDT20527.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083591|gb|EDT68651.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562401|gb|EDV16368.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006595|gb|ACP16338.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269058|gb|ACQ50695.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 403 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|328883064|emb|CCA56303.1| hypothetical protein SVEN_3017 [Streptomyces venezuelae ATCC 10712] Length = 126 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R A L+Q ++ +R + + E G+ +++++A L + +L++ Sbjct: 67 GHRIRELRTAAGLSQDQLADRIHMERRSVQRYERGERDPRFTDLVLIADALGVTVAELVR 126 >gi|284032035|ref|YP_003381966.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811328|gb|ADB33167.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 419 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R + L+QK + S+IS LE G+ +D ++ LA L+T +LL Sbjct: 8 LGSRLRTLRMQKGLSQKALAGDV-VTPSYISLLEAGERMPTLDVILHLARALETTPAELL 66 >gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R R +R+E +T + + G + S +S LE ++ + + +A L Sbjct: 3 PVQRQRIGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQTLPSFTVLAKIAEVLGV 62 Query: 76 PLWKLLK 82 + + ++ Sbjct: 63 GIDEFVR 69 >gi|260555242|ref|ZP_05827463.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411784|gb|EEX05081.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 197 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R T + R ++S IS +E G+++ + LA+ L+ PL ++ Sbjct: 9 AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68 >gi|255525979|ref|ZP_05392904.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255510319|gb|EET86634.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 182 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R E +LT +E N TG +++ + ++E G+S I + ++ L +LL Sbjct: 9 GSVLKRVRFERELTLEETSNLTGVSKAMLGQIERGESNPTISILWKISTGLRISFSELL 67 >gi|222112690|ref|YP_002554954.1| XRE family transcriptional regulator [Acidovorax ebreus TPSY] gi|221732134|gb|ACM34954.1| transcriptional regulator, XRE family [Acidovorax ebreus TPSY] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + N G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRTERGIAQESLANLAGIERSHMGKVERGEHMPTLAIIFKIASALECSTAVLM 84 >gi|229918744|ref|YP_002887390.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470173|gb|ACQ71945.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 74 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK A+LTQ+++ + G QS I+ +E+G DN + LA + L Sbjct: 8 QRLVSLRKAAQLTQEQLALKIGVTQSMIAHIESGTKDPGKDNKLKLAAFFGVTVEYLF 65 >gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] Length = 176 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 34/62 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +++RK+ L+Q+++ N + +S+ E G S + D++I L+ L T + Sbjct: 2 KMLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVSV 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|158317497|ref|YP_001510005.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112902|gb|ABW15099.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 287 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 36/66 (54%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 AI+ R R+ R+ L+Q E+ R+G + +S +ETG+S+ + ++ LA L Sbjct: 2 AIIDTRTGVGPLVRDWRRRKNLSQSELALRSGTSARHLSFVETGRSSPSRGLLLRLAEQL 61 Query: 74 DTPLWK 79 + PL + Sbjct: 62 EIPLRQ 67 >gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +RKE L+Q+ + G ++ +S+ E K+ +++N I ++ L Sbjct: 1 MTLGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAG 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 119 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 7/81 (8%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K+D L+ N RK+ TQ+ + R G IS +E G Sbjct: 1 MAVKKKDSARLAKR-------LGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGAHL 53 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + LA L LL Sbjct: 54 PSLPTLDRLAVALRCSAGDLL 74 >gi|16077148|ref|NP_387961.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221307890|ref|ZP_03589737.1| hypothetical protein Bsubs1_00405 [Bacillus subtilis subsp. subtilis str. 168] gi|221312212|ref|ZP_03594017.1| hypothetical protein BsubsN3_00405 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317145|ref|ZP_03598439.1| hypothetical protein BsubsJ_00405 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321408|ref|ZP_03602702.1| hypothetical protein BsubsS_00405 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313750|ref|YP_004206037.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|90101610|sp|O31417|YAZB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yazB gi|2632347|emb|CAB11856.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291482452|dbj|BAI83527.1| hypothetical protein BSNT_00137 [Bacillus subtilis subsp. natto BEST195] gi|320020024|gb|ADV95010.1| putative transcriptional regulator [Bacillus subtilis BSn5] Length = 69 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I+ R RK TQ+ G + S + E+E G + + A L+ Sbjct: 2 EAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQDAADVLNISA 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 DELAPP 67 >gi|294852923|ref|ZP_06793596.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] gi|294821512|gb|EFG38511.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] Length = 470 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|150006253|ref|YP_001300997.1| hypothetical protein BVU_3764 [Bacteroides vulgatus ATCC 8482] gi|149934677|gb|ABR41375.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 142 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN R LTQ+E+ R G ++ IS++E+GK + I M + L +L+ Sbjct: 12 IRNERLRKGLTQEELGKRIGVGKAQISKIESGK-GLTIKTMTKVLDALGMSASIILQ 67 >gi|37527293|ref|NP_930637.1| hypothetical protein plu3419 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786727|emb|CAE15793.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 97 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + +N R R E +TQK + QS+I+++E G+ +++ + +AH L Sbjct: 21 EYQLVINTLRKARIEKGITQKSLAQALDRPQSFIAKIENGERRLDVVEFVHIAHLLSVDY 80 Query: 78 WKLLK 82 +L+ Sbjct: 81 VLILE 85 >gi|89101267|ref|ZP_01174087.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911] gi|89084017|gb|EAR63198.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911] Length = 110 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 F +++RKE ++TQ+++ + G ++IS++E G D +I +A + +L Sbjct: 4 FGQLLKDLRKEYRITQRKLADLIGIDFTYISKIENGSMEPPAEDKIIKIADVFNKDANEL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + + +R +T + + N++ + + IS +E G +T +++ ++ LA + Sbjct: 3 KELIGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTTPSVEILMKLAGAFGMSI 61 >gi|328887776|emb|CAJ70012.2| Transcriptional regulator, AbrB family [Clostridium difficile] Length = 141 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK + TQ+E+ + ++ I++ E+G+S +I + I LA + L L Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|320536366|ref|ZP_08036407.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320146778|gb|EFW38353.1| helix-turn-helix protein [Treponema phagedenis F0421] Length = 102 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + +R+ ++Q E+ R + ++I+ +E + ++ + LA +L + Sbjct: 10 EILAKNLKRLRRRENISQMELALRANLSTTFINSIENQQRWVSPSTLSKLAKSLQAYPHE 69 Query: 80 LL 81 L Sbjct: 70 LF 71 >gi|312869431|ref|ZP_07729591.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095028|gb|EFQ53312.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 91 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+++ L+Q+++ + QS I+ +E+G + +ID + +A+ L L Sbjct: 36 LTKARRDSGLSQRDLSTISDVPQSTIARIESG-ANTSIDTLTKIANALGKKL 86 >gi|312879718|ref|ZP_07739518.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310783009|gb|EFQ23407.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 124 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +++R+ LTQ+ + ++ ++ +I LE+ + ++ + LA L + Sbjct: 1 MSLGRRIKSLRRALDLTQQNLADKVEVSRIYIQALESNRRLPSMKLLNRLAPALGVEVAD 60 Query: 80 LLK 82 L++ Sbjct: 61 LVQ 63 >gi|294778779|ref|ZP_06744198.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|294447435|gb|EFG16016.1| DNA-binding protein [Bacteroides vulgatus PC510] Length = 101 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + I E +T + + G ++ +S + TGKS+ ++DN++ +A L+ + L+ Sbjct: 4 RIKEIMSERNVTSAWLAEKVGISKVAVSNIVTGKSSPSLDNLLKIADALNVSITTLI 60 >gi|260843067|ref|YP_003220845.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260866991|ref|YP_003233393.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257758214|dbj|BAI29711.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257763347|dbj|BAI34842.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|323967329|gb|EGB62751.1| helix-turn-helix protein [Escherichia coli M863] Length = 94 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 + + + R+ A LTQ+++ G A + I++ E GK + N + + LA L+ P Sbjct: 1 MLITRLKEARRRAGLTQEKLGILAGLDEASASTRINQYEKGKHSPNFETVSNLAKVLNVP 60 Query: 77 LWKLLKP 83 + L P Sbjct: 61 VSFLYTP 67 >gi|311032601|ref|ZP_07710691.1| DNA-binding protein [Bacillus sp. m3-13] Length = 409 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +RK+ K+T + + G + +S +E K+ +++++ +AH L + L Sbjct: 1 MLGDRIRKLRKQKKMTLEALAG-AGLTKGMLSLIENNKANPSMESLTYIAHQLGVDVSDL 59 Query: 81 L 81 L Sbjct: 60 L 60 >gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 205 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P DA + ER+ R +R T + R G ++S IS +E ++ + Sbjct: 7 PTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDK 64 Query: 69 LAHTLDTPLWKLL 81 LA L L L Sbjct: 65 LAAGLGISLAGLF 77 >gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016] gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 69 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N+ + +RKE Q+++ N G + I+ +E K + LA+ L T + KL Sbjct: 4 IMKNSIKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKL 63 Query: 81 LKP 83 +P Sbjct: 64 FEP 66 >gi|169335281|ref|ZP_02862474.1| hypothetical protein ANASTE_01693 [Anaerofustis stercorihominis DSM 17244] gi|169258019|gb|EDS71985.1| hypothetical protein ANASTE_01693 [Anaerofustis stercorihominis DSM 17244] Length = 69 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + R E L+Q ++ G ++ IS +ETG+ +IL LD Sbjct: 5 LILKNKLKVARAEKNLSQGDLAKMVGVSRQTISSIETGQFNPTAKLALILCIALDKKFED 64 Query: 80 LL 81 L Sbjct: 65 LF 66 >gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580] gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580] gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] Length = 113 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 3 LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|307546676|ref|YP_003899155.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218700|emb|CBV43970.1| probable transcriptional regulator [Halomonas elongata DSM 2581] Length = 196 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + TG ++S++S++E G + +I + LA L+ + +L Sbjct: 21 RLKLLRKKLGVTLEALAEGTGLSKSYLSKVERGLNNPSIAAALKLAKALNVQVEELF 77 >gi|302529084|ref|ZP_07281426.1| predicted protein [Streptomyces sp. AA4] gi|302437979|gb|EFL09795.1| predicted protein [Streptomyces sp. AA4] Length = 796 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79 R R++A LTQ+++ R+G + S I LE G+ + + ++A L T + Sbjct: 52 LRETRRQAGLTQEQLAERSGVSVSTIRRLENGRPVDPRMGTVKLIADALGTTPAE 106 >gi|294632403|ref|ZP_06710963.1| DNA-binding protein [Streptomyces sp. e14] gi|292835736|gb|EFF94085.1| DNA-binding protein [Streptomyces sp. e14] Length = 207 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LT + G + + +S LETG+ ++ ++ LA T + +LL Sbjct: 19 VAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYGTTVSELL 78 >gi|294629900|ref|ZP_06708460.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292833233|gb|EFF91582.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 286 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|167583702|ref|ZP_02376090.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 211 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IF N + +RK +TQ ++ G S +S+ E K + L+ D P Sbjct: 7 KEIFAANIKRLRKSRGMTQGDLAKILGVGISTVSDWEKAKKYPRAGVIEKLSQYFDMP 64 >gi|146319128|ref|YP_001198840.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|146321334|ref|YP_001201045.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|145689934|gb|ABP90440.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|145692140|gb|ABP92645.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|292558766|gb|ADE31767.1| hypothetical protein SSGZ1_1311 [Streptococcus suis GZ1] Length = 178 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + M F +++RK+ LTQ++ + + +S E K+ +++ +I+++ Sbjct: 13 PAPRKEKEMNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSS 72 Query: 72 TLDTPLWKLL 81 L +L+ Sbjct: 73 VFSISLDQLI 82 >gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 194 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ + T + TG S +S LE+G ++ ++ LA+ PL +L+ Sbjct: 12 VGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGHRKPGLELLLPLANAYQVPLDELV 71 >gi|159045029|ref|YP_001533823.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] gi|157912789|gb|ABV94222.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] Length = 467 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R++A TQ E+ G + S+++ LE + ++++ ++ L Sbjct: 2 KTFIGPRLRRLRRDANQTQAEMAKALGISNSYVNMLEKNERSVSVPVLLRLFEAYGV 58 >gi|121582747|ref|YP_973189.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596009|gb|ABM39447.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 98 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + + G +S + ++E G+ + ++ +A L L+ Sbjct: 25 FGAAVRALRTEQGVAQETLAHLAGIERSHMGKIERGEHMPTLAIILKIARALGCSSADLM 84 Query: 82 K 82 Sbjct: 85 T 85 >gi|330947178|gb|EGH47918.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 75 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + N R +R A L+Q + ++G ++ + +E G+ +++ + Sbjct: 6 HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 65 Query: 69 LAHTLDT 75 +A L+ Sbjct: 66 VAEALEV 72 >gi|322375562|ref|ZP_08050074.1| putative transcriptional repressor [Streptococcus sp. C300] gi|321279270|gb|EFX56311.1| putative transcriptional repressor [Streptococcus sp. C300] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 468 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + R +R+E LTQ+ + +R G + S+++ +E + + +I L HTL L Sbjct: 2 ARPLIGRTIRRLRQEQGLTQQALASRLGISASYLNLIEHDQRGVTAALLIKLGHTLQVDL 61 Query: 78 WKL 80 L Sbjct: 62 AAL 64 >gi|256783783|ref|ZP_05522214.1| DNA-binding protein [Streptomyces lividans TK24] gi|289767665|ref|ZP_06527043.1| DNA-binding protein [Streptomyces lividans TK24] gi|289697864|gb|EFD65293.1| DNA-binding protein [Streptomyces lividans TK24] Length = 204 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LT + G + + +S LETG+ ++ ++ LA T + +LL Sbjct: 16 VAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAELL 75 >gi|227529967|ref|ZP_03960016.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227350152|gb|EEJ40443.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 214 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R++ TQ++I R ++ IS E +S +I ++ ++ L LL Sbjct: 9 FAQKMKSYRQKNNWTQQDIAERLNVSRKTISSWENSRSYPDIFMLVQISDLYRVSLDDLL 68 Query: 82 K 82 + Sbjct: 69 R 69 >gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 196 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R IR E LT +++ N TGF+++ IS++E I+ + +A L+ + Sbjct: 9 GERVRKIRNERGLTLQDVANFTGFSKALISQIENNIVMPPINTLSKIAKVLNVKM 63 >gi|218281920|ref|ZP_03488252.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989] gi|218217063|gb|EEC90601.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989] Length = 237 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R EA +TQ E + G ++ +S E G+S ++ +I + +T L K Sbjct: 1 MTVAEMIKKTRTEANMTQGEYGAKFGVSRQTVSSWENGRSLPDLQMLIDICNTYHVSLDK 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] Length = 218 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+E L QK++ G S E GK +++ + L+ + + LL Sbjct: 91 FSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLL 150 >gi|206561879|ref|YP_002232642.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037919|emb|CAR53864.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] Length = 509 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ G +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|170692962|ref|ZP_02884123.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141960|gb|EDT10127.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 190 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ +I ++ +AH L Sbjct: 14 VGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67 >gi|170736907|ref|YP_001778167.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819095|gb|ACA93677.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] Length = 192 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR++ ++Q+++ +G IS +ET KS+ ++ ++ + L + + Sbjct: 6 VGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLGMSEFF 65 Query: 82 KP 83 +P Sbjct: 66 EP 67 >gi|53718188|ref|YP_107174.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167814172|ref|ZP_02445852.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208602|emb|CAH34538.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 158 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R E + R+I N + +R EA L+Q+ + + ++++ LE ++ + Sbjct: 75 RPVGEQEPAGEDAPARVI--ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMV 132 Query: 64 DNMIILAHTLDTPLWKLLKP 83 ++ LA L + LL+P Sbjct: 133 VDLQDLADALGISIPALLEP 152 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 R IRK A L+Q E+ R A++ ++ +E G+ + + + LA L + Sbjct: 14 ERLRTIRKRAGLSQDELAARASLARTNLASVEQGRRANLRLSTLSRLADVLGVDVLDFF 72 >gi|113971256|ref|YP_735049.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|114048494|ref|YP_739044.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|117921538|ref|YP_870730.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|113885940|gb|ABI39992.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] gi|113889936|gb|ABI43987.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-7] gi|117613870|gb|ABK49324.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. ANA-3] Length = 208 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK L+Q+E+ R G S IS +E + ++ ++ + + L Sbjct: 30 GASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 88 >gi|311068514|ref|YP_003973437.1| putative Xre family transcriptional regulator [Bacillus atrophaeus 1942] gi|310869031|gb|ADP32506.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus atrophaeus 1942] Length = 108 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R +Q+++ + G + + ETGK+ ++ + L++ L L Sbjct: 1 MFRERLKKCRTSKGYSQQQMADFLGITRQGYGKYETGKAEPDLTTLTKLSNILGVSTDFL 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 105 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 31/57 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + + IRK+ K+TQ E+ TGF Q+ IS E GK +++ ++ A L+ Sbjct: 4 ILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVSP 60 >gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 185 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + G +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|256852137|ref|ZP_05557524.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260661294|ref|ZP_05862207.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282931547|ref|ZP_06337045.1| DNA-binding protein [Lactobacillus jensenii 208-1] gi|256615549|gb|EEU20739.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260547749|gb|EEX23726.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281304321|gb|EFA96425.1| DNA-binding protein [Lactobacillus jensenii 208-1] Length = 136 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R+ L+Q+E+ +R ++ IS+ E G S +I+ + L+ L L+ Sbjct: 6 ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYLV 63 >gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 111 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|88860753|ref|ZP_01135390.1| hypothetical protein PTD2_05830 [Pseudoalteromonas tunicata D2] gi|88817348|gb|EAR27166.1| hypothetical protein PTD2_05830 [Pseudoalteromonas tunicata D2] Length = 239 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R L+Q E+ QS++S+LE KS + + + L L L Sbjct: 1 MTLGEKLKELRLALNLSQPELAQAAAIEQSYLSKLENDKSLPSNEVLRQLLAALKVDLSV 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|319936291|ref|ZP_08010709.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1] gi|319808667|gb|EFW05211.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1] Length = 142 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFA-----QSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R + Q+E+ + G ++ IS+ E GK T D + ++ L+ Sbjct: 4 GKRIKYVRMLRGMRQEELAGKVGLGYNENGRTRISQYENGKRTPKEDMLEKISEALNVES 63 Query: 78 WKL 80 + L Sbjct: 64 YYL 66 >gi|310286536|ref|YP_003937794.1| the helix-turn-helix motif [Bifidobacterium bifidum S17] gi|309250472|gb|ADO52220.1| conserved hypothetical protein with the helix-turn-helix motif [Bifidobacterium bifidum S17] Length = 71 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST---INIDNMIILAHTLDT-PLWKLL 81 + +R + +TQ+E+ R+G I+++ETGK +++D + L L KLL Sbjct: 3 LKELRLKRGMTQRELAQRSGVHHVEIAQIETGKRNVRAVSLDTALRLCDALRVANPRKLL 62 Query: 82 KP 83 P Sbjct: 63 DP 64 >gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 158 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK LTQ E G +++ +S E G S+++ + + + + + Sbjct: 1 MIGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGISSVSTELVDRICKKFNVSYLDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074] gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074] Length = 202 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP P +D +L R +RKE T + TG + S +S LE+G Sbjct: 1 MP-EPTPPPADTDTVLAG---VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRR 56 Query: 61 INIDNMIILAHTLDTPLWKLL 81 +++ ++ +A D PL +L+ Sbjct: 57 PSLELLLPIAAAHDVPLDRLV 77 >gi|260662799|ref|ZP_05863693.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260552880|gb|EEX25879.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 167 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R L+Q+++ + + I +E G +I+ + ++A L + +L Sbjct: 1 MVNNKIKQLRLSKNLSQEQLAEKAKVSVRTIQRMEAGD-DASIETLNLVAGALGVSVKEL 59 Query: 81 L 81 Sbjct: 60 F 60 >gi|229551306|ref|ZP_04440031.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540940|ref|YP_003175439.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315265|gb|EEN81238.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152616|emb|CAR91588.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 189 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N+ + +R +LTQ ++ ++ ++ +S ETG+ ++ + LA + +L Sbjct: 5 VLGNHLKTLRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDEL 64 Query: 81 LKP 83 L+P Sbjct: 65 LRP 67 >gi|226307191|ref|YP_002767151.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226186308|dbj|BAH34412.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 268 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M + R+ +LTQ + G + +S +ETG+S + D ++ L+ LD PL Sbjct: 4 ETMDVGTELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63 Query: 78 WK 79 + Sbjct: 64 RQ 65 >gi|222081886|ref|YP_002541251.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726565|gb|ACM29654.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 38 MAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 97 Query: 80 LLK 82 + Sbjct: 98 FFR 100 >gi|170732473|ref|YP_001764420.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254245889|ref|ZP_04939210.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|124870665|gb|EAY62381.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|169815715|gb|ACA90298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 D + ER+ R++R T + R+G ++S IS +E ++ + L Sbjct: 23 VADDTGINERI--ARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAIVLDKL 80 Query: 70 AHTLDTPLWKLL 81 A L L L Sbjct: 81 AAGLGVSLAALF 92 >gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis] Length = 111 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|328883125|emb|CCA56364.1| putative DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 286 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +++ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRKLREAKNMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTPLWKLL 81 + +++ Sbjct: 65 YEVEDERMV 73 >gi|314937188|ref|ZP_07844534.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] gi|313654699|gb|EFS18445.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] Length = 178 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N ++ R +LTQ E+ + + +S E GK+ NI + L+ D L +L Sbjct: 1 MISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLDEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|291523885|emb|CBK89472.1| Helix-turn-helix [Eubacterium rectale DSM 17629] Length = 77 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78 + N ++ R +AKLTQ ++ +T + S++S++E +++I + +A+ L + Sbjct: 12 VIGANIKHYRAQAKLTQVQLAEQTKISLSYLSKIEAAGCDKSLSISVLNQIANVLSVEIN 71 Query: 79 KLLK 82 + K Sbjct: 72 EFFK 75 >gi|229029542|ref|ZP_04185622.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] gi|228731741|gb|EEL82643.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] Length = 95 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + Sbjct: 19 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNV 74 >gi|225863714|ref|YP_002749092.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789773|gb|ACO29990.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 77 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M + +R+ +Q+++ + G + + + E KS +IDN+I+L+ + Sbjct: 1 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNV 56 >gi|163746322|ref|ZP_02153680.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380207|gb|EDQ04618.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 195 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + +SDA+ + R IRK KLT ++ + W+S++E ST +I ++ Sbjct: 4 ESSRISDAVTP--RSLGADLRAIRKGRKLTLTDMAEALDRSVGWVSQVERDISTPSIADL 61 Query: 67 IILAHTLDTPLWKLL 81 +A L P+ L Sbjct: 62 RRIAEVLGVPISLLF 76 >gi|154496755|ref|ZP_02035451.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] gi|150274007|gb|EDN01107.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] Length = 82 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +R++ LTQ E+ G + ++E GK I + + LA LL Sbjct: 13 FSANLKYLRQKKGLTQGEMAKLLGVTTNHYQKIEYGKVNIPVLTLCFLADYFGVTTDYLL 72 >gi|157376991|ref|YP_001475591.1| hypothetical protein Ssed_3859 [Shewanella sediminis HAW-EB3] gi|157319365|gb|ABV38463.1| hypothetical protein Ssed_3859 [Shewanella sediminis HAW-EB3] Length = 233 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 M N ++ R E +Q E+ G QS++S+LE KS + D L L Sbjct: 1 MTLGNQIKHFRNERGYSQPELAELAGIEQSYLSKLENDKSVPSNDIFRQLLSALS 55 >gi|57234348|ref|YP_181599.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] gi|57224796|gb|AAW39853.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] Length = 222 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 M R RK T + + +R+G + +I +LE G+ +I + L+ Sbjct: 10 MSIGEKIREFRKARGWTPEYLGSRSGLSGQYIRKLEKGERQSITLTTASKLSSAFGIEPS 69 Query: 79 KLL 81 KL+ Sbjct: 70 KLI 72 >gi|83950962|ref|ZP_00959695.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83838861|gb|EAP78157.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 83 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 32/65 (49%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D I R N RN RK KLTQ E+ +R+G Q IS +ET S +D + L Sbjct: 2 DQIARSPKDVGNALRNARKAKKLTQAELASRSGIWQRTISTIETSASGAKLDTIFDLLAA 61 Query: 73 LDTPL 77 LD + Sbjct: 62 LDLEI 66 >gi|331700580|ref|YP_004397539.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329127923|gb|AEB72476.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 74 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R LTQ E+ N ++ IS ETG+S+ +I +++ L + D L LL Sbjct: 3 VSQKIQYCRTLRNLTQDEVGNLLHVSRKTISGWETGRSSPDILSLVKLCNLFDISLDDLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] Length = 176 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ ++Q+E+ + G + +S E + ++D LA L L Sbjct: 1 MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLCGVSLDDL 60 >gi|220911489|ref|YP_002486798.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858367|gb|ACL38709.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 504 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+A LT + G A S +S +E GK + + LA L+ + +LL Sbjct: 36 LGRRVRHLRKQAGLTLDGLSAAVGTAPSQLSLIENGKREPKLTLLQHLAAALNVSIDQLL 95 >gi|251794538|ref|YP_003009269.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542164|gb|ACS99182.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 74 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + N+ R +R ++TQ+++ ++ G + I LE G + +++ ++HT P+ Sbjct: 3 KNLVGNHIRKLRFNLNEMTQQQLADKVGVTRQTIVALEKGNYSPSLELAFRISHTFGLPI 62 Query: 78 WKLL 81 ++ Sbjct: 63 EEIF 66 >gi|119511637|ref|ZP_01630743.1| transcriptional regulator [Nodularia spumigena CCY9414] gi|119463709|gb|EAW44640.1| transcriptional regulator [Nodularia spumigena CCY9414] Length = 113 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + IR+ ++Q ++ TG++ I ++E G+ S++ +D L LL Sbjct: 7 LKKIREAQGISQNDLARITGYSVQNIQKIEQGRVSSLTLDAFDRFCKALGCLPGDLL 63 >gi|75760227|ref|ZP_00740282.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492280|gb|EAO55441.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 8 VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67 >gi|309776579|ref|ZP_07671559.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915680|gb|EFP61440.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 189 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R E K+T K+I T + ++S+LE G ++I D + +A L + Sbjct: 6 GELIKQKRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 60 >gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N + RK L+Q E+ NR G + + E+G+ +I + +A+ L+ Sbjct: 4 RSDIGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGILNEIANILNISPA 63 Query: 79 KLL 81 +L+ Sbjct: 64 ELI 66 >gi|291520457|emb|CBK75678.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 111 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + + + RK KLTQ+++ + ++S++E G N++ + +A +D Sbjct: 3 VDYKLIGSRIKLYRKSKKLTQEKLAELLAISVGYVSKMERGIEHPNLEMLSSIAQIVDCD 62 Query: 77 LWKLL 81 + L+ Sbjct: 63 IANLI 67 >gi|317130649|ref|YP_004096931.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475597|gb|ADU32200.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 68 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + LTQ+++ + G + IS +E GK + + + + ++ L ++ Sbjct: 4 NKVKIARTQVNLTQQQLAEKIGVTRQTISLIEKGKYNPTLKLCLDICYAVNKTLDEVF 61 >gi|282860479|ref|ZP_06269545.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282564215|gb|EFB69751.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 161 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|254819472|ref|ZP_05224473.1| XRE family transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 64 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + TQ+E+ R+G +++ + +LE G+ I + + +A L +LL+ Sbjct: 2 GTRIQTLRIDRGYTQEELALRSGVSRNVLIDLEYGRRGILHERLFDIAKALGVSASELLE 61 >gi|239907159|ref|YP_002953900.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239797025|dbj|BAH76014.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 110 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +R+ ++TQ ++ G +S IS +E G+ I + LA L+T Sbjct: 52 GDALRGMRRLREMTQAQLAAAIGVHKSHISGMERGRRPIGKEMAKRLADALNTS 105 >gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L E+ RKE TQ + + G +S+ E GKS + M+ L L Sbjct: 16 ALMEQEKIGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKSMPDASLMLELCQLLK 75 Query: 75 TPLWKLL 81 + +LL Sbjct: 76 ISVNELL 82 >gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 508 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R+ RK TQ ++ + G +QS ++ +E G + ++ + + LD+ + L Sbjct: 10 GNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQNLTLEMLARIGEALDSEIVSL 67 >gi|261346297|ref|ZP_05973941.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282565609|gb|EFB71144.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 113 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 I R IRK + +I + G +Q S E GK I+ID + Sbjct: 18 IAGRELRRIRKMKGFSGAKIAKQLGVSQQHYSRYECGKCRISIDTL 63 >gi|254465481|ref|ZP_05078892.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686389|gb|EDZ46871.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 182 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R A + + + G A+S +S+LE G +++ + LA L PL Sbjct: 6 QMIAAAIQRERNRAGKSLSALAAQAGIAKSTLSQLEAGNGNPSVETLWALAAALGVPLSL 65 Query: 80 LLK 82 L + Sbjct: 66 LFE 68 >gi|29828186|ref|NP_822820.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29605288|dbj|BAC69355.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 208 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LT + G + + +S LETG+ ++ ++ LA T + +LL Sbjct: 15 VAPQLRALRRRASLTLEVAARAAGLSPAHLSRLETGQRQPSLPMLLALARIYGTTVSELL 74 >gi|13476100|ref|NP_107670.1| hypothetical protein mll7326 [Mesorhizobium loti MAFF303099] gi|14026860|dbj|BAB53456.1| mll7326 [Mesorhizobium loti MAFF303099] Length = 192 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RK+ +T ++ T + +S++E G ++ ++ + L+ L P+ + Sbjct: 7 GREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFR 66 >gi|134300624|ref|YP_001114120.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053324|gb|ABO51295.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 139 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +RKE + ++++ N G ++ E+G+ ++ D +I LA D + L Sbjct: 28 GERLRQLRKEKNINREDVANLLGVTVRSVTNYESGQRNLDPDQLIALADYYDVSMDYL 85 >gi|237715765|ref|ZP_04546246.1| transcriptional regulator [Bacteroides sp. D1] gi|262408773|ref|ZP_06085319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294645534|ref|ZP_06723230.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294806594|ref|ZP_06765430.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|229444474|gb|EEO50265.1| transcriptional regulator [Bacteroides sp. D1] gi|262353638|gb|EEZ02732.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639108|gb|EFF57430.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294446209|gb|EFG14840.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] Length = 104 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R R+ LTQ+E+ N G ++ IS +E GK + + + + + Sbjct: 33 QSFLIGEAIRKARQSKNLTQEELGNLIGVQRAQISRIENGK-NLTLSTLSKVFKAMGIS 90 >gi|296131090|ref|YP_003638340.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296022905|gb|ADG76141.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 152 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R LTQ+E+ +G AQ I+ ETG+ ++ + L L +L Sbjct: 5 YGTQLRARRIRLGLTQRELARLSGVAQPVIAATETGRRGVSAETRSRLDEALSVRPSVVL 64 >gi|228994858|ref|ZP_04154653.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764883|gb|EEM13642.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 68 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + R +A LTQ+++ + G + +S +E GK ++ + + + ++ L ++ Sbjct: 3 NHVKIARVKADLTQQQLADAVGITRQTVSLIEKGKYNPSLKLCLQICYAVNANLDEIF 60 >gi|189349935|ref|YP_001945563.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189333957|dbj|BAG43027.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 205 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P DA + ER+ R +R T + R G ++S IS +E ++ + Sbjct: 7 PTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDK 64 Query: 69 LAHTLDTPLWKLL 81 LA L L L Sbjct: 65 LAAGLGISLAGLF 77 >gi|167908369|ref|ZP_02495574.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 202 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E K T ++ G ++S +SE+E K+ I L + L L +L Sbjct: 25 VGEQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 >gi|167745764|ref|ZP_02417891.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] gi|167654795|gb|EDR98924.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] Length = 149 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ N RK++ L+Q+++ + G ++ IS+ ETG++ +I LA L +L+ Sbjct: 3 LGNSLFNARKKSGLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDELI 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|78047856|ref|YP_364031.1| hypothetical protein XCV2300 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|121593746|ref|YP_985642.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|78036286|emb|CAJ23977.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|120605826|gb|ABM41566.1| transcriptional regulator, XRE family [Acidovorax sp. JS42] Length = 97 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + + Q+E+ G +S + ++E G+ ++ ++ +A L L+ Sbjct: 25 FGKAVRAFRMDQGIAQEELAGLAGIERSHMGKIERGEHLPSLALILKIATALKMSGTDLM 84 >gi|84684082|ref|ZP_01011984.1| hypothetical protein 1099457000262_RB2654_16576 [Maritimibacter alkaliphilus HTCC2654] gi|84667835|gb|EAQ14303.1| hypothetical protein RB2654_16576 [Rhodobacterales bacterium HTCC2654] Length = 97 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQ+E+ +R G ++S+ SE+E+GK N + A + P ++L+ Sbjct: 4 KLRSLREKRGWTQEEVASRAGMSKSFYSEIESGKKAANSQRIRKFAEVFEVPAFELI 60 >gi|75758326|ref|ZP_00738450.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494188|gb|EAO57280.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 145 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+++ + G + + + E+ KS +IDN+I+L+ + + +L+ Sbjct: 6 LGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens DSM 7] gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens LL3] Length = 113 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 3 LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|293365795|ref|ZP_06612501.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|306824899|ref|ZP_07458243.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306829820|ref|ZP_07463007.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|307703337|ref|ZP_07640281.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315613479|ref|ZP_07888387.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|291315728|gb|EFE56175.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|304427831|gb|EFM30924.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433110|gb|EFM36082.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307623113|gb|EFO02106.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315314475|gb|EFU62519.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 212 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|126179356|ref|YP_001047321.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862150|gb|ABN57339.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 72 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R +TQ+E+ + + I+ +E GK +I+ +A T + ++ Sbjct: 3 NRIKVFRAMHDMTQEELADAIRVTRRTINSIERGKYNPSIEVAYRIAKTFGVTIEEVF 60 >gi|329941310|ref|ZP_08290589.1| chitinase-promoter-binding protein [Streptomyces griseoaurantiacus M045] gi|329299841|gb|EGG43740.1| chitinase-promoter-binding protein [Streptomyces griseoaurantiacus M045] Length = 289 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTPLWKLL 81 + +++ Sbjct: 65 YEVEDVRIV 73 >gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] Length = 212 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++RK+ TQ+++ ++ G + IS ET +S +ID + +A + LL Sbjct: 6 FSKKLISLRKKYNFTQQDLADKLGISNKTISRWETSESYPDIDLLPKIADIFHVSIDYLL 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|312131969|ref|YP_003999309.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311908515|gb|ADQ18956.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 109 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++RKE ++Q ++ + G ++ + E + +ID +A L+ L L Sbjct: 3 FGTTVADLRKEKGISQTDLAAQLGIHKNVLGRYERNEVFPSIDIARKIADILEVSLDYL 61 >gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 225 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 36 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 95 Query: 80 LLK 82 + Sbjct: 96 FFR 98 >gi|187940050|gb|ACD39183.1| transcription regulator [Pseudomonas aeruginosa] Length = 75 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +++Q + +S++ +E G+ I ++ + +A L Sbjct: 6 KALGERIRMQRKVCRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELACDPSS 65 Query: 80 LLKP 83 LL P Sbjct: 66 LLPP 69 >gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] Length = 119 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ LT K++ + +Q IS E G IN+D + ++ H L L Sbjct: 16 VGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELGCSLSNFF 75 >gi|107027495|ref|YP_625006.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693793|ref|YP_839326.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254249535|ref|ZP_04942855.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|105896869|gb|ABF80033.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651793|gb|ABK12433.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|124876036|gb|EAY66026.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208] Length = 111 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 212 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++T ++ G ++S +SE+E K+ I L + L L L Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|302544296|ref|ZP_07296638.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302461914|gb|EFL25007.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 264 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I+ + + R+ A +TQ+E+ + +S IS +E G+ + ++ L L+T Sbjct: 4 IYGDWLKEQREAAGMTQQELADAAIMTRSHISHIEAGRRIPSKEDARRLDQALNT 58 >gi|169343361|ref|ZP_02864365.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] gi|169298447|gb|EDS80533.1| tRNA modification GTPase TrmE [Clostridium perfringens C str. JGS1495] Length = 64 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R LTQKE+ N+ G + +S+ E G I + M+ LA LDT + +L Sbjct: 2 KIKLRRISKGLTQKELANKVGISHVTLSKFENGSYENITLRTMLKLAAALDTTVHELF 59 >gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 185 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + G +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|311747857|ref|ZP_07721642.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126575850|gb|EAZ80160.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 23/68 (33%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 E + +R + +Q E+ G + + +E ++ +D + L Sbjct: 2 KTKMENKALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAVPRMDTIKRLFQIF 61 Query: 74 DTPLWKLL 81 ++L Sbjct: 62 GMSPEEVL 69 >gi|118444002|ref|YP_878514.1| DNA-binding protein [Clostridium novyi NT] gi|118134458|gb|ABK61502.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 184 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N + IR + ++ + TG +++ + ++E G+S + + +A L Sbjct: 7 IIGMNLKTIRTKRNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVS 62 >gi|159185809|ref|NP_357025.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140943|gb|AAK89810.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 472 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 31/64 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E++ R +R+ A+ TQ + R G + S+++++E + ++ ++ L Sbjct: 3 TEKLFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLD 62 Query: 77 LWKL 80 + +L Sbjct: 63 MAEL 66 >gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp. subtilis str. 168] gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis BSn5] gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yqaE gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis] gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis] gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis BSn5] Length = 116 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + RK+ KLTQ+ + ++ G + + E G + +I +++ LD L L Sbjct: 1 MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|15675737|ref|NP_269911.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19746847|ref|NP_607983.1| transcription regulator [Streptococcus pyogenes MGAS8232] gi|21911201|ref|NP_665469.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28896578|ref|NP_802928.1| transcription regulator [Streptococcus pyogenes SSI-1] gi|50915002|ref|YP_060974.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|56808043|ref|ZP_00365843.1| COG1476: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] gi|71911461|ref|YP_283011.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94991225|ref|YP_599325.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94993168|ref|YP_601267.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|139474424|ref|YP_001129140.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209560078|ref|YP_002286550.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|306826624|ref|ZP_07459929.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|13622957|gb|AAK34632.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19749087|gb|AAL98482.1| putative transcription regulator [Streptococcus pyogenes MGAS8232] gi|21905413|gb|AAM80272.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28811832|dbj|BAC64761.1| putative transcription regulator [Streptococcus pyogenes SSI-1] gi|50904076|gb|AAT87791.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10394] gi|71854243|gb|AAZ52266.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS5005] gi|94544733|gb|ABF34781.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] gi|94546676|gb|ABF36723.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS2096] gi|134272671|emb|CAM30942.1| putative DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209541279|gb|ACI61855.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|304431202|gb|EFM34206.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 68 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+Q+ + + G ++ I+ +E G I+ I + LD L L Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E KLTQ+++ + + IS E G T +I+ + +A D + LL Sbjct: 3 FPTRLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDFLL 62 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F N + +R + LT KE+ + +++LE+GK +++++I L+ LD P Sbjct: 77 FSKNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEALDAP 131 >gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 249 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + RKE KL+Q+ + + G +Q +IS++E+G+S + + + L Sbjct: 5 YGLRLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSEPSRNFLQALTERFGVS 59 >gi|187932677|ref|YP_001886786.1| hypothetical protein CLL_A2598 [Clostridium botulinum B str. Eklund 17B] gi|187720830|gb|ACD22051.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 66 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + R+ +LTQ+++ + G + I LE GK ++ + ++ ++TP+ KL Sbjct: 4 FICNLKKYRQMKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAVDISRVVETPIEKLF 63 >gi|291560817|emb|CBL39617.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 110 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+A TQ++I + ++IS +E + +N+ + A L+ + LL Sbjct: 9 VGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL 68 Query: 82 KP 83 +P Sbjct: 69 RP 70 >gi|239945391|ref|ZP_04697328.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|239991848|ref|ZP_04712512.1| regulatory protein [Streptomyces roseosporus NRRL 11379] Length = 208 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ LT + R+G + ++S++E ++ ++ ++ +A L T +LL Sbjct: 34 LGNAVRRRRRALDLTLASVAERSGLSVPFLSQIENDRARPSMRSLQRIADALRTTAVELL 93 >gi|227539972|ref|ZP_03970021.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240250|gb|EEI90265.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 195 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N R + LTQ+++ G I +E G+ + +A LD + Sbjct: 5 RTSF--NLSQKRSDKGLTQQKLAELAGLTTRTIQRIEKGEVIPQGYTLQRIAEALDISIE 62 Query: 79 KL 80 +L Sbjct: 63 EL 64 >gi|218677991|ref|ZP_03525888.1| XRE family transcriptional regulator [Rhizobium etli CIAT 894] Length = 182 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R+ L +E+ R+G + S IS +E K + +ID + + L T + Sbjct: 5 GSKLHELRRRRNLGVRELAARSGISHSTISLIERDKMSPSIDTLSAVLEALGTTM 59 >gi|254461150|ref|ZP_05074566.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206677739|gb|EDZ42226.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 190 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT ++ + + WIS++E S ++ ++ +A LD P+ L Sbjct: 12 LGADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSILF 71 >gi|188590292|ref|YP_001921521.1| hypothetical protein CLH_2140 [Clostridium botulinum E3 str. Alaska E43] gi|188500573|gb|ACD53709.1| conserved domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 64 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN R E +Q+E+ + G +Q +S +E G +ID M L + KL + Sbjct: 3 NNLILARGEK--SQQEVADDIGISQKTLSAIERGYRNPSIDLMKRLQSYYKVSMLKLFE 59 >gi|149916560|ref|ZP_01905075.1| hypothetical protein RAZWK3B_11662 [Roseobacter sp. AzwK-3b] gi|149809534|gb|EDM69393.1| hypothetical protein RAZWK3B_11662 [Roseobacter sp. AzwK-3b] Length = 113 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R++ N R R+ TQ + + + + E+E G+ T ++ + LA L Sbjct: 48 VNRLLNGENALRVYRELRGYTQAALAEKADVNRVTVGEIEIGRKTGSVKTLRKLADALAV 107 Query: 76 PLWKLL 81 + L+ Sbjct: 108 TVDDLI 113 >gi|90021251|ref|YP_527078.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950851|gb|ABD80866.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 175 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R++ L+Q+E+ R S +S +E GK + ++ ++ + + L Sbjct: 2 GRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKVSPSVASLERILSAIPISLEAFF 60 >gi|78067846|ref|YP_370615.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968591|gb|ABB09971.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 286 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%) Query: 12 SDAILRERMI------FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 D++ R+R + R +R+EAK T E+ + ++S++E + I++ + Sbjct: 17 PDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISLSS 76 Query: 66 MIILAHTLDTPLWKLL 81 ++ +A LD PL L+ Sbjct: 77 LVNVAKALDVPLSALI 92 >gi|283784131|ref|YP_003363996.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] gi|282947585|emb|CBG87140.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] Length = 185 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 199 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79 >gi|228478235|ref|ZP_04062843.1| conserved domain protein [Streptococcus salivarius SK126] gi|228249914|gb|EEK09184.1| conserved domain protein [Streptococcus salivarius SK126] Length = 65 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ G + I +E GK ++ I + TLD L +L Sbjct: 6 RLKAARAEHDMTQGDLAEAVGATRQTIGLIEAGKYNPSLGLCIAICKTLDRTLDQLF 62 >gi|126641560|ref|YP_001084544.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|184157878|ref|YP_001846217.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|239502244|ref|ZP_04661554.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|332872520|ref|ZP_08440490.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126387444|gb|ABO11942.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|183209472|gb|ACC56870.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|238685471|gb|ACR54771.1| predicted transcriptional regulator [Acinetobacter genomosp. 13TU] gi|255076973|gb|ACU00285.1| transcriptional regulator [Acinetobacter baumannii] gi|322508196|gb|ADX03650.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323517283|gb|ADX91664.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|323517795|gb|ADX92176.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739326|gb|EGJ70183.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 197 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R T + R ++S IS +E G+++ + LA+ L+ PL ++ Sbjct: 9 AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68 >gi|154253896|ref|YP_001414720.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154157846|gb|ABS65063.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 97 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R + F R R + Q E +R ++S + ++E G+ Sbjct: 8 PGRPTGTSTYESESA---LAFGQAVRAARVAQGVAQDEFASRAVISRSHMGKIERGEHVP 64 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 + ++ ++ L +L+ Sbjct: 65 TLPLILRISTALRISAAELMT 85 >gi|75910458|ref|YP_324754.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704183|gb|ABA23859.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 531 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RK+ L+Q+++ TG +QSWI ++E G+ +++ ++L L Sbjct: 483 EARKKLGLSQRDLAKLTGKSQSWIRDIENGRFQAKLEDQMVLRKALGIS 531 >gi|83944600|ref|ZP_00957050.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. EE-36] gi|83844577|gb|EAP82464.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. EE-36] Length = 94 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R E +T +E+ R G ++ +S +E G T+++ + +A L PL++ Sbjct: 5 IRAARLERNMTAQELAERAGVSRPLLSRVERGDMTVSLGAVFEIATILGVPLFE 58 >gi|322391684|ref|ZP_08065152.1| transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145495|gb|EFX40888.1| transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ + G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDMTQSDLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7] gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 208 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R + L+Q E+ + G+ ++S I+++ETG I ++ +A LD Sbjct: 3 ETIGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGGRDIPKSQVVKIAEILDLTPS 62 Query: 79 KLL 81 L+ Sbjct: 63 YLM 65 >gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 75 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E +TQ E+ G + + +E G+ + +++ +A L PL ++ Sbjct: 10 NRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRYSPSLETAFQIARALGVPLDEVF 68 >gi|256545809|ref|ZP_05473165.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170] gi|256398505|gb|EEU12126.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170] Length = 490 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE LTQK++ TG ++ IS+LE+ +I+ + L+ TL+ + L + Sbjct: 17 RKEKNLTQKKLEEITGINRTMISKLESQNYIPSIEQLESLSDTLEFEITDLFQ 69 >gi|255282865|ref|ZP_05347420.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266639|gb|EET59844.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 212 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMIILAHTLDTPLWKLL 81 N + IR TQ E+ R+G + I E I + D+M LA L + L+ Sbjct: 151 NLKRIRTAYGFTQAELAERSGVSLRSIQMYEQRNKNINKASADSMYSLARALGCTMEDLI 210 Query: 82 K 82 + Sbjct: 211 E 211 >gi|255100249|ref|ZP_05329226.1| hypothetical protein CdifQCD-6_05535 [Clostridium difficile QCD-63q42] Length = 72 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 + +RKE +TQ E+ + +++++IS+LE + INI +I L+ L+ +L + Sbjct: 2 LKKLRKERGMTQNELAEKANYSRAYISDLENKRYKNINISTIIDLSLALEIDFLELCR 59 >gi|187939866|gb|ACD39004.1| transcription control protein [Pseudomonas aeruginosa] Length = 76 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R A TQ+++ + ++++S +E G + I ++ LA L +++ Sbjct: 7 FGKVLRRRRVAAGFTQEQLAHEAELQRNYVSLMERGVNQPTITTLLKLAIPLGCTAAEIV 66 >gi|254249643|ref|ZP_04942963.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124876144|gb|EAY66134.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 200 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 34/72 (47%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R P ++ + + + R +R+ K T + G ++ ++S++E G ++ ++ Sbjct: 6 RPAMVPPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSL 65 Query: 64 DNMIILAHTLDT 75 ++ +AH L Sbjct: 66 TSLAGIAHALGV 77 >gi|134292501|ref|YP_001116237.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135658|gb|ABO56772.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E KLT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii DPC 6026] Length = 114 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N N+RK L+Q ++ +R G A S + ET K + ++++A D + +LL Sbjct: 4 LGENISNLRKSRGLSQAQLADRLGIATSTLGMYETNKREPSNQTLLLIADFFDKTVDELL 63 >gi|307704468|ref|ZP_07641378.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307706023|ref|ZP_07642846.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|322376999|ref|ZP_08051492.1| putative transcriptional repressor [Streptococcus sp. M334] gi|307620442|gb|EFN99555.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307621988|gb|EFO01015.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|321282806|gb|EFX59813.1| putative transcriptional repressor [Streptococcus sp. M334] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|297156337|gb|ADI06049.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ + LT + G + + +S LET + ++ ++ LA T T + LL Sbjct: 24 VAPRLRDLRRRSGLTLEAAARLAGLSPAHLSRLETARRQPSLPMLLALARTYGTTVSDLL 83 >gi|159039188|ref|YP_001538441.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918023|gb|ABV99450.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 196 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R++ + T E+ TG + S +S LE+G ++ ++ LA L + Sbjct: 10 EAVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGARRPTLELLLPLARAYGVTLDE 69 Query: 80 LL 81 L+ Sbjct: 70 LV 71 >gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 32/55 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +N+R++ L+Q ++ + G S I ++ETG+++ +I + +A+ LD Sbjct: 7 LGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSGSIHTLKKIANKLDVS 61 >gi|325833141|ref|ZP_08165689.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485697|gb|EGC88164.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 16 LRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L++R + R R+ +TQ+ + G Q ++S+LE G+ I + + +A L Sbjct: 4 LKDRQVRLGAAIRAERRRQNITQQVLAGMIGTTQDYVSDLEAGEYNIKVGRLWQIADALG 63 Query: 75 TPLWKLL 81 L+ Sbjct: 64 VHPGDLM 70 >gi|317485947|ref|ZP_07944803.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922797|gb|EFV44027.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 87 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+E +TQ + G + IS++E G+ + +I+LAH L L+ Sbjct: 10 FGKILVTAREERGITQYRLARLAGRSIQQISQIERGEREPKLSALILLAHALGMEPGTLV 69 >gi|312960308|ref|ZP_07774819.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|311285530|gb|EFQ64100.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 199 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L ++ +Q +S++E + + ++D + L L PL KL Sbjct: 15 LGLQIKRQRQAQDLKLSDVAKIADISQGMLSKIENAQVSTSLDTLSRLCDVLGLPLSKLF 74 >gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 469 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 59 >gi|298530359|ref|ZP_07017761.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] gi|298509733|gb|EFI33637.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira thiodismutans ASO3-1] Length = 915 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R LTQ ++ + ++ + LE G+S + + L L Sbjct: 4 KTFGERVRLFRALKNLTQGQLADMLDISRHHMGCLERGESGPSFGLIRKLCTLLQVHPAS 63 Query: 80 LL 81 L Sbjct: 64 LF 65 >gi|167756656|ref|ZP_02428783.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402] gi|237733944|ref|ZP_04564425.1| predicted protein [Mollicutes bacterium D7] gi|167702831|gb|EDS17410.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402] gi|229383025|gb|EEO33116.1| predicted protein [Coprobacillus sp. D7] Length = 139 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS----TINIDNMIILAHTLDTP 76 + ++ R +Q ++ TG + S IS +E G I++ +++ +AH + Sbjct: 8 LIGKYIKSTRLSKGWSQSKLEKITGLSASSISNIELGNRGVSYNISLPSLVKIAHAFEMS 67 Query: 77 LWKLL 81 L LL Sbjct: 68 LVDLL 72 >gi|167569121|ref|ZP_02361995.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 186 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLF 60 >gi|66395170|ref|YP_239447.1| ORF006 [Staphylococcus phage PT1028] gi|62635524|gb|AAX90635.1| ORF006 [Staphylococcus phage PT1028] Length = 244 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69 M F + R KL+ KE+ + +Q++IS+LE GK +++ + L Sbjct: 1 MTFGEILKKERVSWKLSVKELSTLSDVSQTYISKLENGKRNFPSLETIFNL 51 >gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 123 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +RK LT K++ + A+S IS E G + D + A + L Sbjct: 1 MIGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|84502066|ref|ZP_01000224.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597] gi|84390061|gb|EAQ02695.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LTQ+++ +R QS+++ +E+G+ I++ +I+LA ++ LL Sbjct: 3 AARKAAGLTQEQLADRLKCHQSFVARVESGERRIDVIELIVLARAMEVDASTLL 56 >gi|22537286|ref|NP_688137.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|25011245|ref|NP_735640.1| hypothetical protein gbs1196 [Streptococcus agalactiae NEM316] gi|77413033|ref|ZP_00789235.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|22534155|gb|AAN00010.1|AE014243_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|23095669|emb|CAD46855.1| Unknown [Streptococcus agalactiae NEM316] gi|77160931|gb|EAO72040.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|319745147|gb|EFV97471.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 65 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R +A ++Q + G A+ I+ +E K ++D I LA L T L L Sbjct: 2 NRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQTDLNTLF 59 >gi|323528510|ref|YP_004230662.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385512|gb|ADX57602.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 190 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ +I ++ +AH L Sbjct: 14 VGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67 >gi|167465718|ref|ZP_02330807.1| transcriptional regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 70 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ R RK TQ E+ + G + S + +E G + ++ + ++ L L Sbjct: 2 EKDAVAQRIRAFRKLKGYTQNELADEIGVSISVLGSIERGTRSADLKILQKISDVLKIEL 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 281 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R EPH L R R ++Q ++ G +Q IS +E+G+S D Sbjct: 5 RREPHAPPHEL------GQLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDT 58 Query: 66 MIILAHTLDTPLWK 79 ++ LA TLD PL + Sbjct: 59 LLTLAQTLDVPLRE 72 >gi|194433805|ref|ZP_03066079.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|194417908|gb|EDX34003.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|332098182|gb|EGJ03155.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 185 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R+E +++ ++ G + I+ E G N D ++ +A + L Sbjct: 3 LFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFGVTVDYL 62 Query: 81 L 81 + Sbjct: 63 I 63 >gi|75762322|ref|ZP_00742202.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897473|ref|YP_002445884.1| DNA-binding protein [Bacillus cereus G9842] gi|228904512|ref|ZP_04068598.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74490185|gb|EAO53521.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544400|gb|ACK96794.1| DNA-binding protein [Bacillus cereus G9842] gi|228855117|gb|EEM99690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 184 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|16129260|ref|NP_415815.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24112698|ref|NP_707208.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 301] gi|30062819|ref|NP_836990.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 2457T] gi|74312331|ref|YP_310750.1| DNA-binding transcriptional repressor PuuR [Shigella sonnei Ss046] gi|82544245|ref|YP_408192.1| DNA-binding transcriptional repressor PuuR [Shigella boydii Sb227] gi|82777190|ref|YP_403539.1| DNA-binding transcriptional repressor PuuR [Shigella dysenteriae Sd197] gi|89108145|ref|AP_001925.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|157158238|ref|YP_001462606.1| DNA-binding transcriptional repressor PuuR [Escherichia coli E24377A] gi|157160810|ref|YP_001458128.1| DNA-binding transcriptional repressor PuuR [Escherichia coli HS] gi|170020334|ref|YP_001725288.1| DNA-binding transcriptional repressor PuuR [Escherichia coli ATCC 8739] gi|170080978|ref|YP_001730298.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170680966|ref|YP_001743877.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SMS-3-5] gi|170768785|ref|ZP_02903238.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|187731345|ref|YP_001880138.1| DNA-binding transcriptional repressor PuuR [Shigella boydii CDC 3083-94] gi|188493518|ref|ZP_03000788.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|191165095|ref|ZP_03026939.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|193062757|ref|ZP_03043851.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194425904|ref|ZP_03058460.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194437065|ref|ZP_03069164.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209918542|ref|YP_002292626.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SE11] gi|218553857|ref|YP_002386770.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI1] gi|218694875|ref|YP_002402542.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 55989] gi|218700021|ref|YP_002407650.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI39] gi|218704829|ref|YP_002412348.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMN026] gi|238900535|ref|YP_002926331.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253773699|ref|YP_003036530.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161379|ref|YP_003044487.1| DNA-binding transcriptional repressor PuuR [Escherichia coli B str. REL606] gi|256018450|ref|ZP_05432315.1| DNA-binding transcriptional repressor PuuR [Shigella sp. D9] gi|256022988|ref|ZP_05436853.1| DNA-binding transcriptional repressor PuuR [Escherichia sp. 4_1_40B] gi|260843648|ref|YP_003221426.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|260854998|ref|YP_003228889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|260867748|ref|YP_003234150.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|293404842|ref|ZP_06648834.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293409702|ref|ZP_06653278.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|293414636|ref|ZP_06657285.1| putrescine utilization regulator [Escherichia coli B185] gi|293433661|ref|ZP_06662089.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|297516524|ref|ZP_06934910.1| DNA-binding transcriptional repressor PuuR [Escherichia coli OP50] gi|298380485|ref|ZP_06990084.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|300818983|ref|ZP_07099187.1| cupin domain protein [Escherichia coli MS 107-1] gi|300822532|ref|ZP_07102671.1| cupin domain protein [Escherichia coli MS 119-7] gi|300897366|ref|ZP_07115793.1| cupin domain protein [Escherichia coli MS 198-1] gi|300904951|ref|ZP_07122769.1| cupin domain protein [Escherichia coli MS 84-1] gi|300919489|ref|ZP_07135988.1| cupin domain protein [Escherichia coli MS 115-1] gi|300926689|ref|ZP_07142464.1| cupin domain protein [Escherichia coli MS 182-1] gi|300927813|ref|ZP_07143375.1| cupin domain protein [Escherichia coli MS 187-1] gi|300935406|ref|ZP_07150404.1| cupin domain protein [Escherichia coli MS 21-1] gi|300948384|ref|ZP_07162487.1| cupin domain protein [Escherichia coli MS 116-1] gi|300954551|ref|ZP_07166997.1| cupin domain protein [Escherichia coli MS 175-1] gi|301017611|ref|ZP_07182285.1| cupin domain protein [Escherichia coli MS 69-1] gi|301022735|ref|ZP_07186583.1| cupin domain protein [Escherichia coli MS 196-1] gi|301304353|ref|ZP_07210466.1| cupin domain protein [Escherichia coli MS 124-1] gi|301326966|ref|ZP_07220258.1| cupin domain protein [Escherichia coli MS 78-1] gi|301647199|ref|ZP_07247020.1| cupin domain protein [Escherichia coli MS 146-1] gi|307137942|ref|ZP_07497298.1| DNA-binding transcriptional repressor PuuR [Escherichia coli H736] gi|307309944|ref|ZP_07589594.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309788300|ref|ZP_07682904.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309796914|ref|ZP_07691315.1| cupin domain protein [Escherichia coli MS 145-7] gi|312971493|ref|ZP_07785668.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331641864|ref|ZP_08342999.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331652348|ref|ZP_08353367.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331662718|ref|ZP_08363641.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331667689|ref|ZP_08368553.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331672830|ref|ZP_08373616.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331682793|ref|ZP_08383412.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332279502|ref|ZP_08391915.1| transcriptional regulator PuuR [Shigella sp. D9] gi|71164830|sp|P0A9U6|PUUR_ECOLI RecName: Full=HTH-type transcriptional regulator puuR gi|71164831|sp|P0A9U7|PUUR_SHIFL RecName: Full=HTH-type transcriptional regulator puuR gi|1742129|dbj|BAA14868.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|1787557|gb|AAC74381.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24051617|gb|AAN42915.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041067|gb|AAP16797.1| hypothetical protein S1386 [Shigella flexneri 2a str. 2457T] gi|58197515|dbj|BAD88707.1| transcriptional repressor [Escherichia coli K-12] gi|73855808|gb|AAZ88515.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81241338|gb|ABB62048.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81245656|gb|ABB66364.1| conserved hypothetical protein [Shigella boydii Sb227] gi|157066490|gb|ABV05745.1| transcriptional regulator PuuR [Escherichia coli HS] gi|157080268|gb|ABV19976.1| transcriptional regulator PuuR [Escherichia coli E24377A] gi|169755262|gb|ACA77961.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888813|gb|ACB02520.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170122333|gb|EDS91264.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|170518684|gb|ACB16862.1| transcriptional regulator PuuR [Escherichia coli SMS-3-5] gi|187428337|gb|ACD07611.1| transcriptional regulator PuuR [Shigella boydii CDC 3083-94] gi|188488717|gb|EDU63820.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|190904867|gb|EDV64572.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|192931879|gb|EDV84479.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194415959|gb|EDX32225.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194424048|gb|EDX40036.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209911801|dbj|BAG76875.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351607|emb|CAU97319.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218360625|emb|CAQ98183.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|218370007|emb|CAR17781.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218431926|emb|CAR12811.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|238860975|gb|ACR62973.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242377078|emb|CAQ31804.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|253324743|gb|ACT29345.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973280|gb|ACT38951.1| DNA-binding transcriptional repressor [Escherichia coli B str. REL606] gi|253977494|gb|ACT43164.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|257753647|dbj|BAI25149.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|257758795|dbj|BAI30292.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|257764104|dbj|BAI35599.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|260449568|gb|ACX39990.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|281600723|gb|ADA73707.1| HTH-type transcriptional regulator puuR [Shigella flexneri 2002017] gi|284921184|emb|CBG34250.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli 042] gi|291324480|gb|EFE63902.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|291427050|gb|EFF00077.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291434694|gb|EFF07667.1| putrescine utilization regulator [Escherichia coli B185] gi|291470170|gb|EFF12654.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|298277927|gb|EFI19441.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|299881132|gb|EFI89343.1| cupin domain protein [Escherichia coli MS 196-1] gi|300318461|gb|EFJ68245.1| cupin domain protein [Escherichia coli MS 175-1] gi|300358850|gb|EFJ74720.1| cupin domain protein [Escherichia coli MS 198-1] gi|300400105|gb|EFJ83643.1| cupin domain protein [Escherichia coli MS 69-1] gi|300403100|gb|EFJ86638.1| cupin domain protein [Escherichia coli MS 84-1] gi|300413443|gb|EFJ96753.1| cupin domain protein [Escherichia coli MS 115-1] gi|300417265|gb|EFK00576.1| cupin domain protein [Escherichia coli MS 182-1] gi|300452059|gb|EFK15679.1| cupin domain protein [Escherichia coli MS 116-1] gi|300459384|gb|EFK22877.1| cupin domain protein [Escherichia coli MS 21-1] gi|300464098|gb|EFK27591.1| cupin domain protein [Escherichia coli MS 187-1] gi|300524948|gb|EFK46017.1| cupin domain protein [Escherichia coli MS 119-7] gi|300528444|gb|EFK49506.1| cupin domain protein [Escherichia coli MS 107-1] gi|300840340|gb|EFK68100.1| cupin domain protein [Escherichia coli MS 124-1] gi|300846437|gb|EFK74197.1| cupin domain protein [Escherichia coli MS 78-1] gi|301074685|gb|EFK89491.1| cupin domain protein [Escherichia coli MS 146-1] gi|306909662|gb|EFN40156.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308119442|gb|EFO56704.1| cupin domain protein [Escherichia coli MS 145-7] gi|308923682|gb|EFP69185.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309701599|emb|CBJ00906.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli ETEC H10407] gi|310336090|gb|EFQ01290.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|313649492|gb|EFS13923.1| helix-turn-helix family protein [Shigella flexneri 2a str. 2457T] gi|315060554|gb|ADT74881.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315135938|dbj|BAJ43097.1| transcriptional regulator [Escherichia coli DH1] gi|315254342|gb|EFU34310.1| cupin domain protein [Escherichia coli MS 85-1] gi|315619382|gb|EFU99926.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320180265|gb|EFW55200.1| Putrescine utilization regulator [Shigella boydii ATCC 9905] gi|320187693|gb|EFW62369.1| Putrescine utilization regulator [Shigella flexneri CDC 796-83] gi|320199337|gb|EFW73928.1| Putrescine utilization regulator [Escherichia coli EC4100B] gi|323153351|gb|EFZ39608.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323162336|gb|EFZ48191.1| helix-turn-helix family protein [Escherichia coli E128010] gi|323168281|gb|EFZ53966.1| helix-turn-helix family protein [Shigella sonnei 53G] gi|323172339|gb|EFZ57976.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|323179742|gb|EFZ65303.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185537|gb|EFZ70898.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378885|gb|ADX51153.1| Cupin 2 conserved barrel domain protein [Escherichia coli KO11] gi|323937624|gb|EGB33892.1| cupin domain-containing protein [Escherichia coli E1520] gi|323942417|gb|EGB38587.1| cupin domain-containing protein [Escherichia coli E482] gi|323947750|gb|EGB43753.1| cupin domain-containing protein [Escherichia coli H120] gi|323962457|gb|EGB58039.1| cupin domain-containing protein [Escherichia coli H489] gi|323964563|gb|EGB60037.1| cupin domain-containing protein [Escherichia coli M863] gi|323973458|gb|EGB68644.1| cupin domain-containing protein [Escherichia coli TA007] gi|323977066|gb|EGB72153.1| cupin domain-containing protein [Escherichia coli TW10509] gi|324117506|gb|EGC11412.1| cupin domain-containing protein [Escherichia coli E1167] gi|327253996|gb|EGE65625.1| helix-turn-helix family protein [Escherichia coli STEC_7v] gi|331038662|gb|EGI10882.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331050626|gb|EGI22684.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331061140|gb|EGI33104.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331065274|gb|EGI37169.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331070051|gb|EGI41420.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331080424|gb|EGI51603.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332091697|gb|EGI96777.1| helix-turn-helix family protein [Shigella boydii 5216-82] gi|332094835|gb|EGI99879.1| helix-turn-helix family protein [Shigella boydii 3594-74] gi|332101854|gb|EGJ05200.1| transcriptional regulator PuuR [Shigella sp. D9] gi|332342898|gb|AEE56232.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMNK88] gi|332757959|gb|EGJ88286.1| helix-turn-helix family protein [Shigella flexneri 4343-70] gi|332759548|gb|EGJ89856.1| helix-turn-helix family protein [Shigella flexneri 2747-71] gi|332760399|gb|EGJ90689.1| helix-turn-helix family protein [Shigella flexneri K-671] gi|332767540|gb|EGJ97734.1| DNA-binding transcriptional repressor [Shigella flexneri 2930-71] gi|333005778|gb|EGK25296.1| helix-turn-helix family protein [Shigella flexneri K-218] gi|333007643|gb|EGK27121.1| helix-turn-helix family protein [Shigella flexneri K-272] gi|333019110|gb|EGK38400.1| helix-turn-helix family protein [Shigella flexneri K-304] gi|333019578|gb|EGK38858.1| helix-turn-helix family protein [Shigella flexneri K-227] Length = 185 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|262202131|ref|YP_003273339.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085478|gb|ACY21446.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 116 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R +R + T +E+ + ++SE+E G+ + + + + LD + Sbjct: 6 REALGDSLRRVRTDQGRTLREVSTDARVSLGYLSEVERGQKEASSELLAAICDALDVEIA 65 Query: 79 KLL 81 LL Sbjct: 66 DLL 68 >gi|229553416|ref|ZP_04442141.1| probable transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258538560|ref|YP_003173059.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229313297|gb|EEN79270.1| probable transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257150236|emb|CAR89208.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 100 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ A L+Q+E+ N++G ++ I+ +E G S +I+ + +A+ L Sbjct: 47 EARQNAGLSQQELANKSGVPKTTIARIERG-SNTSIETLTKIANALGKQ 94 >gi|298345338|ref|YP_003718025.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|315655757|ref|ZP_07908655.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|298235399|gb|ADI66531.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|315489821|gb|EFU79448.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 112 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKEA L+Q E+ G + I +E +++ ++ L L +L Sbjct: 53 ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELF 110 >gi|227500587|ref|ZP_03930636.1| possible helix-turn-helix domain protein [Anaerococcus tetradius ATCC 35098] gi|227217292|gb|EEI82634.1| possible helix-turn-helix domain protein [Anaerococcus tetradius ATCC 35098] Length = 289 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF ++IR + L+Q+ + + IS +E K ++DN+ L+ L L Sbjct: 7 KYIFGKFLKDIRNKRNLSQERLAELSFINIKTISNMENAKVNFDLDNLDRLSSILSVDLI 66 Query: 79 K 79 + Sbjct: 67 E 67 >gi|222106747|ref|YP_002547538.1| transcriptional regulator [Agrobacterium vitis S4] gi|221737926|gb|ACM38822.1| transcriptional regulator [Agrobacterium vitis S4] Length = 219 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 8 EPHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 A+ R M + R RK+ +T ++ TG + +S++E G + + Sbjct: 16 LAQDPHAVREPRANNLEMAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISAS 75 Query: 63 IDNMIILAHTLDTPLWKLLK 82 + + L+ L P+ K Sbjct: 76 LGTLQSLSKALGVPMTAFFK 95 >gi|222081446|ref|YP_002540809.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726125|gb|ACM29214.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR + +R + R IR + L+Q E+ ++ + I + E+GK+ + Sbjct: 60 PRSAGRDIDTPSIHPIDRHV-GQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRM 118 Query: 62 NIDNMIILAHTLDTPL 77 + + +A+ L+ P+ Sbjct: 119 SASVLYEIANCLNVPI 134 >gi|196045124|ref|ZP_03112357.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196024126|gb|EDX62800.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 403 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKSLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|89055867|ref|YP_511318.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88865416|gb|ABD56293.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 469 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ R+IR LTQK+ + G + +++++E ++ ++ LA Sbjct: 2 PTQKLYVGAKLRSIRTGVGLTQKDFAAKLGISLPYLNQMENNNRPLSTAVLMGLAQDFGV 61 Query: 76 PLWKL 80 + +L Sbjct: 62 DVTEL 66 >gi|21242911|ref|NP_642493.1| hypothetical protein XAC2176 [Xanthomonas axonopodis pv. citri str. 306] gi|21108408|gb|AAM37029.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 98 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R E + Q+ + N +S + ++E G+ + + +A L + +L+ Sbjct: 25 FGAAVRAARTEQGIGQETLANLAAVERSHMGKIERGEHLPTLAIIFKIARALGCSVAELM 84 >gi|15801869|ref|NP_287889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 EDL933] gi|15831130|ref|NP_309903.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. Sakai] gi|168749060|ref|ZP_02774082.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|168755982|ref|ZP_02780989.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|168762686|ref|ZP_02787693.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|168769383|ref|ZP_02794390.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|168775126|ref|ZP_02800133.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|168782830|ref|ZP_02807837.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|168788374|ref|ZP_02813381.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|168799611|ref|ZP_02824618.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208811113|ref|ZP_03252946.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208815007|ref|ZP_03256186.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208820275|ref|ZP_03260595.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209400310|ref|YP_002270360.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|217329459|ref|ZP_03445539.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254792894|ref|YP_003077731.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. TW14359] gi|261224290|ref|ZP_05938571.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK2000] gi|261257454|ref|ZP_05949987.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK966] gi|291282394|ref|YP_003499212.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|12515475|gb|AAG56505.1|AE005376_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361341|dbj|BAB35299.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769283|gb|EDU33127.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|188016620|gb|EDU54742.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|188999714|gb|EDU68700.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|189356802|gb|EDU75221.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|189361581|gb|EDU80000.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|189367033|gb|EDU85449.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|189371817|gb|EDU90233.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|189377991|gb|EDU96407.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208724619|gb|EDZ74327.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208731655|gb|EDZ80343.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208740398|gb|EDZ88080.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209161710|gb|ACI39143.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|209771738|gb|ACI84181.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771740|gb|ACI84182.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771742|gb|ACI84183.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771744|gb|ACI84184.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771746|gb|ACI84185.1| hypothetical protein ECs1876 [Escherichia coli] gi|217317898|gb|EEC26326.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254592294|gb|ACT71655.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. TW14359] gi|290762267|gb|ADD56228.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|320189942|gb|EFW64594.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. EC1212] gi|320637202|gb|EFX07028.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. G5101] gi|320642569|gb|EFX11817.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. 493-89] gi|320647922|gb|EFX16630.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. H 2687] gi|320653523|gb|EFX21628.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659223|gb|EFX26812.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. USDA 5905] gi|320664016|gb|EFX31203.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. LSU-61] gi|326341032|gb|EGD64825.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1125] gi|326343272|gb|EGD67039.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1044] Length = 185 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 137 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +Q ++ + G + + + E KS +IDN+I+L+ + L +L+ Sbjct: 3 LGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|330980471|gb|EGH78574.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 109 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78 F + + R+ AKL Q E+ R G Q+ IS+LE GKS ++ +A LW Sbjct: 3 FKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKATA-HVAKIADVCGVNALW 59 >gi|309776168|ref|ZP_07671159.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308916119|gb|EFP61868.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 92 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +R++A +T +E+ NR+ ++I ++E G S +I + IL +D Sbjct: 8 PATELTGMKLRELREKAGMTLRELANRSMIDFTYIKKIELGVSDPSIITLDILLQAMDLN 67 Query: 77 LWKLL 81 L Sbjct: 68 LQDFF 72 >gi|302038624|ref|YP_003798946.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300606688|emb|CBK43021.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] Length = 202 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 36/66 (54%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++ + R +RK L+ + + ++ GF+ S+IS++E +++ +I + +A L Sbjct: 19 RKKTHVGDIVRRLRKSRHLSVRTLADKCGFSPSFISQVELRQASPSIASTERIASALGVT 78 Query: 77 LWKLLK 82 L + + Sbjct: 79 LGEFFR 84 >gi|288942483|ref|YP_003444723.1| XRE family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288897855|gb|ADC63691.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 95 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R+ +++Q + + ++S++SELE+GK ID + + T P Sbjct: 1 MLNQALKLTRQFHRMSQAALAEKLSISKSYLSELESGKKIPTIDILERYSATFKVP 56 >gi|257486496|ref|ZP_05640537.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009982|gb|EGH90038.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 171 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R IR LTQ+ + + +++++S +E ++ I+ LA L Sbjct: 14 KQALAAVVRTIRGNLGLTQESLAHAA--SRTYLSRIENAETNPTIEKFAELAEALGLNPV 71 Query: 79 KLL 81 L+ Sbjct: 72 SLM 74 >gi|253690483|ref|YP_003019673.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757061|gb|ACT15137.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 111 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + R L+QK++ G A + I+ E G +I+ LA LD P Sbjct: 10 VFCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIETAQQLAEALDVP 69 Query: 77 L 77 L Sbjct: 70 L 70 >gi|228921209|ref|ZP_04084538.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838424|gb|EEM83736.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 184 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|326440324|ref|ZP_08215058.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 275 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 D R F R +R E TQ+E+ R G + + IS +ETG+ Sbjct: 7 DPEKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPT 56 >gi|254505711|ref|ZP_05117857.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus 16] gi|219551364|gb|EED28343.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus 16] Length = 207 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGEKIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|182438820|ref|YP_001826539.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467336|dbj|BAG21856.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 275 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M RK+ +P D F R R TQ E+ R G + + IS +ETG+ Sbjct: 1 MVNRKQLDPEDPDVS------FGLQLRQARDARGWTQDELAGRMGCSGTHISAVETGRRP 54 Query: 61 IN 62 Sbjct: 55 PT 56 >gi|163745028|ref|ZP_02152388.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] gi|161381846|gb|EDQ06255.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] Length = 227 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R RD +++ + + R+ L+ + +G ++S +S++E G+S+ Sbjct: 32 RAPRDISAMTENNDKILTQLPARLKEARQGQGLSLDAVAKLSGVSRSMVSQIERGESSPT 91 Query: 63 IDNMIILAHTLDTPLWKLL 81 I + L L LL Sbjct: 92 IATLWNLTRALQVDFAGLL 110 >gi|148807441|gb|ABR13513.1| predicted transcriptional regulator [Pseudomonas aeruginosa] Length = 73 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +++Q + +S++ +E G+ I ++ + +A L Sbjct: 6 KALGERIRVQRKACRISQDALALACNIDRSYVGRIERGEVNITVEKLYRIASVLACDPCG 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|150398491|ref|YP_001328958.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030006|gb|ABR62123.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 234 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%) Query: 2 PRRKRDEP--HLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54 P R P AI R + R RK+ +T ++ + T + +S++ Sbjct: 20 PGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKI 79 Query: 55 ETGKSTINIDNMIILAHTLDTPLWKLLK 82 E G ++ ++ + L+ L P+ + Sbjct: 80 ENGNTSPSLTTLQTLSRALGVPITAFFR 107 >gi|83589108|ref|YP_429117.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572022|gb|ABC18574.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 115 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R+ L Q+++ G + ++ E G ++ ++ L+ L +L+ Sbjct: 4 FGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELV 63 >gi|328957520|ref|YP_004374906.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] gi|328673844|gb|AEB29890.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] Length = 166 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE KLTQ+++ + +Q +S ETGK+ +I ++I LA D L LL Sbjct: 7 LKQKRKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSLDNLL 62 >gi|310825965|ref|YP_003958322.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] gi|308737699|gb|ADO35359.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] Length = 150 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK + TQ+E+ +R G ++ +++ E G+S ++ N LA + L L+ Sbjct: 8 NLTALRKMNQYTQEEVASRIGVSRQAVAKWENGESAPDVINCNALAEMYNVSLDDLV 64 >gi|307324180|ref|ZP_07603388.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889911|gb|EFN20889.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 297 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+E +T +E+ +QS IS LE G+ +I+ ++ L T Sbjct: 9 VRRRRLGQELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKVE 68 Query: 77 LWKLL 81 L+ Sbjct: 69 DKALV 73 >gi|300715975|ref|YP_003740778.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061811|emb|CAX58927.1| predicted transcriptional regulator [Erwinia billingiae Eb661] Length = 188 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++R E + + + TG +++ +S +E G+++ M L + +LL Sbjct: 11 LAQRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCIAYGLTMSRLL 70 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ N R +RKE LTQ+++ G +S+ ETG ++ M+ LA +T + Sbjct: 2 KVCLAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVD 61 Query: 79 KLL 81 LL Sbjct: 62 VLL 64 >gi|254254842|ref|ZP_04948159.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] gi|124899487|gb|EAY71330.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] Length = 203 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R+ + + +R E +LT ++ G ++S +SE+E K+ I Sbjct: 8 RRTPASAVPQPPATTPPRVGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTI 67 Query: 64 DNMIILAHTLDTPLWKLL 81 L + L L +L Sbjct: 68 AVAWRLTNALGITLDELF 85 >gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator [Shewanella oneidensis MR-1] gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family [Shewanella oneidensis MR-1] Length = 272 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 19 RMIFVNNFRNIRKEAKL-TQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTP 76 + N + +R +A + +Q + G +QS + E G ++ + LA L+ Sbjct: 7 KKKVGRNIKRLRLKAGIKSQAALAELCGWKSQSRVGNYEAGTRAVSAIDAETLAKVLNVT 66 Query: 77 LWKLL 81 ++L Sbjct: 67 PAEIL 71 >gi|328551781|gb|AEB22273.1| putative transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328910041|gb|AEB61637.1| Uncharacterized HTH-type transcriptional regulator yazB [Bacillus amyloliquefaciens LL3] Length = 75 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I+ R RK TQ+ G + S + E+E G + + A L+ Sbjct: 2 EAEIWGRRIRAFRKLKGYTQEGFAKAIGISVSILGEIERGNRLPSAVIIRDAADALNISA 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 EELAPP 67 >gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 225 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 36 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 95 Query: 80 LLK 82 + Sbjct: 96 FFR 98 >gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens FD-1] Length = 217 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M F +R E +TQ E+ G+ ++S I+++E+G+ + + +A LDT Sbjct: 1 MTFGERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERDPHQSMIAAIAKALDTTPA 60 Query: 79 KLL 81 L+ Sbjct: 61 YLM 63 >gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] Length = 220 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R + LTQKE+ ++ G + IS+ ETGKS +I L + L+ + +LL Sbjct: 10 IATTRTKIGLTQKELADKIGVSDKTISKWETGKSLPDISYYESLCNALNIKVNELL 65 >gi|169796192|ref|YP_001713985.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213157074|ref|YP_002319119.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215483646|ref|YP_002325867.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301347624|ref|ZP_07228365.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510309|ref|ZP_07235546.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301596869|ref|ZP_07241877.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332850551|ref|ZP_08432827.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332865761|ref|ZP_08436556.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|169149119|emb|CAM86996.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213056234|gb|ACJ41136.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213985862|gb|ACJ56161.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332730613|gb|EGJ61927.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332735102|gb|EGJ66186.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 197 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R T + R ++S IS +E G+++ + LA+ L+ PL ++ Sbjct: 9 AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68 >gi|160937793|ref|ZP_02085152.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] gi|158439232|gb|EDP16985.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + K++Q+ + ++ G ++ +++ E G S N+ LA + + + Sbjct: 1 MALSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISE 60 Query: 80 LLKP 83 L+ P Sbjct: 61 LVDP 64 >gi|319637930|ref|ZP_07992696.1| XRE family Transcriptional regulator [Neisseria mucosa C102] gi|317401085|gb|EFV81740.1| XRE family Transcriptional regulator [Neisseria mucosa C102] Length = 86 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLD 74 + IF F+ RK LTQ+++ G A + I+ E G +++ + +A L+ Sbjct: 4 QEIFTRRFKEARKAKNLTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLQKIAEVLE 63 Query: 75 TPL 77 P Sbjct: 64 VPP 66 >gi|315223084|ref|ZP_07864952.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187773|gb|EFU21520.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 79 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ+++ + G + I +E GK ++ I + LD L +L Sbjct: 15 KLKMARVEHDLTQRDLADAIGVTRQTIGLIEAGKYNPSLGLCIAICKRLDKTLDQLF 71 >gi|312889566|ref|ZP_07749116.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297914|gb|EFQ75033.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 83 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+ LT +++ + I ETGK I + ++ LA L+ +LL Sbjct: 13 FGKRLKYLRQSKNLTYRKMALLCNVEYADIQRYETGKVNITLLSLGELAKALEVDPQELL 72 >gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 118 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ KL+Q ++ G QS I+ E G+S +++ ++ A D L LL Sbjct: 4 LGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQSAPSLETLVRYADYFDVSLDYLL 63 >gi|332653727|ref|ZP_08419471.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516813|gb|EGJ46418.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 310 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R LTQ+E+ R ++ +S+ E+ S ++ ++ L T L Sbjct: 1 MSFGENLQFYRAREGLTQEELAERLEVSRQSVSKWESNTSFPEMEKLMTLCSLFQTDLDT 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|299136728|ref|ZP_07029911.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298601243|gb|EFI57398.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 258 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ +Q ++ TG +Q IS +E+G+S + + ++ LA TLD PL + Sbjct: 19 LRYWRRQRGKSQLDLSLDTGVSQRHISFVESGRSVPSRELLLSLAKTLDVPLRE 72 >gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 139 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+A ++Q+++ R G ++ +S+ E +S ++D + LA L Sbjct: 1 MILADKIIMLRKKAGMSQEQLAERLGVSRQSVSKWEGSQSMPDMDKAVKLADLFGLSLDS 60 Query: 80 LLK 82 L++ Sbjct: 61 LIR 63 >gi|302552146|ref|ZP_07304488.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302469764|gb|EFL32857.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 286 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|254512558|ref|ZP_05124624.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221532557|gb|EEE35552.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 468 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +R++ K TQ E+ G + S+I+ LE + ++++ ++ +A Sbjct: 3 KTLIGPRLRQLRRDQKQTQAEMARNLGVSPSYINLLENNQRSLSVQMLMSIAEAYAIDWR 62 Query: 79 KLLK 82 +L K Sbjct: 63 ELTK 66 >gi|159043770|ref|YP_001532564.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911530|gb|ABV92963.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 468 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +R+E K TQ E+ G + ++++ LE + ++++ ++ L T + Sbjct: 3 KTLVGPRLRALRRERKQTQAEMAQALGVSPAYVNLLENNQRSLSVQMLMALTETYNVDWR 62 Query: 79 KLLK 82 L+K Sbjct: 63 DLVK 66 >gi|116252575|ref|YP_768413.1| helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257223|emb|CAK08318.1| putative helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 264 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + ++ R R+ +++Q ++ +Q +S +E+G+ST + D ++ LA LD Sbjct: 2 TPTARSL-GDHLREWRQRRRMSQLDLALEAEISQRHLSFIESGRSTPSRDMLLHLAERLD 60 Query: 75 TPLWK 79 PL Sbjct: 61 VPLRD 65 >gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RK+A LTQ+++ + G + +S E G I+I + LA L Sbjct: 11 GQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYTL 65 >gi|313899270|ref|ZP_07832786.1| cupin domain protein [Clostridium sp. HGF2] gi|312955950|gb|EFR37602.1| cupin domain protein [Clostridium sp. HGF2] Length = 195 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R E K+T K+I T + ++S+LE G ++I D + +A L + Sbjct: 10 GELIKQRRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 64 >gi|310828836|ref|YP_003961193.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] gi|308740570|gb|ADO38230.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] Length = 66 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R +TQK++ G + ++ +E G I + + L L +L Sbjct: 2 GKNLRIKAARAALDMTQKDLAEAVGVTRQTMNAIEKGDYNPTIKLCVAICRVLGKTLDEL 61 Query: 81 L 81 Sbjct: 62 F 62 >gi|266619168|ref|ZP_06112103.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288869316|gb|EFD01615.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 33/62 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RN R++ +++I R + +++ +E+G+ ++D +I L + + ++L Sbjct: 8 FGASLRNAREKRNYRREQIAERAEISPRFLAAIESGRRKPSLDVLIRLVNAIGASFDEIL 67 Query: 82 KP 83 P Sbjct: 68 AP 69 >gi|290894051|ref|ZP_06557025.1| phage protein [Listeria monocytogenes FSL J2-071] gi|290556395|gb|EFD89935.1| phage protein [Listeria monocytogenes FSL J2-071] Length = 73 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ R E LTQK++ N+ G A+ I ++E G +I+ + + L+T + + Sbjct: 8 FKLKRIENGLTQKQLANKVGLAEISIRKIENGVRNPSINTAVRICKILNTKIEVIF 63 >gi|229132613|ref|ZP_04261461.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228650845|gb|EEL06832.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] Length = 405 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 5 LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|256379796|ref|YP_003103456.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827] gi|255924099|gb|ACU39610.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827] Length = 138 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T +E+ + ++SE+E G+ + + + + L+ PL Sbjct: 6 REAIGDRLRHARTTQRRTLREVSRTARVSLGYLSEVERGRKEASSELLAAICDALELPLS 65 Query: 79 KLL 81 +LL Sbjct: 66 ELL 68 >gi|261368378|ref|ZP_05981261.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569577|gb|EFB75112.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 90 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK +TQKE+ R G AQ+ IS E+G ++ + +A +L L Sbjct: 36 KCRKALGITQKELAERMGTAQANISRFESGNYNPSLAFLQKMAQSLGKTL 85 >gi|167913747|ref|ZP_02500838.1| putative transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] Length = 86 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ L+Q+ + + ++++S +E G+ + ++ + + L+ L Sbjct: 9 VGEVLRSLRRRKGLSQEALAHAADMERNYVSLIELGRHSPSVRVIWKICAALEVTPSAFL 68 >gi|160934259|ref|ZP_02081646.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] gi|156866932|gb|EDO60304.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] Length = 162 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R+ K +Q+E+ + G ++ +++ E+G++ ++ N LA + + L+ Sbjct: 13 RNLTVLRQIHKYSQEEVAEKIGVSRQAVAKWESGETAPDLINCDALAELYNVSVDDLI 70 >gi|73749022|ref|YP_308261.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|289433017|ref|YP_003462890.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660738|emb|CAI83345.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|288946737|gb|ADC74434.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R LTQ+E+ ++ G + + +E GK + +++ +A +TP+ ++ Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFETPIEEIF 60 >gi|163939593|ref|YP_001644477.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861790|gb|ABY42849.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 404 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|219668525|ref|YP_002458960.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538785|gb|ACL20524.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q+++ G + I +E GK ++ I + L L L Sbjct: 5 RLKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLF 61 >gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] Length = 66 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LTQ+E+ + G + I +E GK ++ +A + + Sbjct: 3 NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFGVKIEDIF 60 >gi|298244352|ref|ZP_06968158.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297551833|gb|EFH85698.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 442 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ R LTQ+++ GF QS+IS+LE G+ +I + +AH L P Sbjct: 79 VGQVLKHYRSIHHLTQRDLATILGFDQSYISKLENGQGLRDIAVLSRIAHCLAIP 133 >gi|289168327|ref|YP_003446596.1| hypothetical protein smi_1494 [Streptococcus mitis B6] gi|288907894|emb|CBJ22734.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 71 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 8 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 64 >gi|163754491|ref|ZP_02161613.1| transcriptional regulator [Kordia algicida OT-1] gi|161325432|gb|EDP96759.1| transcriptional regulator [Kordia algicida OT-1] Length = 73 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+E + Q+++ + +S +S LE G + + + +A L+ L +L+ Sbjct: 12 GKRVKMLREEKGMAQQDLAAKCNIEKSNLSRLEAGGTNPTLYTLKRIADNLEIKLEELV 70 >gi|126730415|ref|ZP_01746226.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126709148|gb|EBA08203.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 188 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R +R+ LT +++ ++ G + W+S++E S +I ++ LA LD + L Sbjct: 10 LGSDLRTLRRTRGLTLQQLADKLGRSVGWLSQVERDLSEPSITDLRHLAAALDVSVSMLA 69 Query: 82 K 82 + Sbjct: 70 R 70 >gi|296330427|ref|ZP_06872907.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675973|ref|YP_003867645.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] gi|2702242|gb|AAB91591.1| Orf2 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296152430|gb|EFG93299.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414217|gb|ADM39336.1| putative transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] Length = 139 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F R +R+ KLT ++ +G + + IS++E GK T + LA L P L Sbjct: 4 FGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|42522817|ref|NP_968197.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100] gi|39574013|emb|CAE79190.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100] Length = 103 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K D D I+ E + F + IR ++TQ E+ + G + +S+LE G Sbjct: 1 MSTKKSDAIKFLDKIIGEPVSFGATLQAIRLSDEMTQAEMAKKLGITNAHLSQLERGHKF 60 Query: 61 INIDNMIILAHTLDTPL 77 ++ + + A L P Sbjct: 61 VSPERALSFAKKLGYPP 77 >gi|147669788|ref|YP_001214606.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270736|gb|ABQ17728.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 69 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R LTQ+E+ ++ G + + +E GK + +++ +A TP+ ++ Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFKTPIEEIF 60 >gi|327472731|gb|EGF18158.1| transcriptional regulator [Streptococcus sanguinis SK408] Length = 71 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|323499242|ref|ZP_08104219.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315630|gb|EGA68664.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 207 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + ++IR + LT +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGDRIKDIRGKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|227823870|ref|YP_002827843.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227342872|gb|ACP27090.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 125 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R +R+ ++QKE+ G + +++S LE GK + D + +A + Sbjct: 4 FGEAMRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNV 58 >gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291] Length = 243 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + + RK L+Q+ + +QS I+ LE+G N+ LA LD + L Sbjct: 11 FKDRLKEARKNKNLSQENLAKLAEVSQSTIAALESG-RNKKATNIAKLAKILDVSAFWL 68 >gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile QCD-37x79] Length = 149 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R + L Q E+ +QS I E + T ++++ LA + L Sbjct: 1 MFGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|157149688|ref|YP_001449888.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074482|gb|ABV09165.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 71 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA TLDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALF 59 >gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429] gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429] Length = 206 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R + LTQ+++ N Q IS E+GK+T +++ + LA D Sbjct: 4 GEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDV 56 >gi|333004623|gb|EGK24147.1| helix-turn-helix family protein [Shigella flexneri VA-6] Length = 185 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|330809025|ref|YP_004353487.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377133|gb|AEA68483.1| putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 199 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L ++ +Q +S++E + + ++D + L L PL KL Sbjct: 15 LGLQIKRQRQAQDLKLSDVAKIADISQGMLSKIENAQVSTSLDTLSRLCDVLGLPLSKLF 74 >gi|317494137|ref|ZP_07952553.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917910|gb|EFV39253.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 265 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R + +TQ+E+ G +Q I +ETGK + + + LD PL Sbjct: 4 NNIKQLRTQLSITQRELAYMVGTSQQQIQRIETGKVAAKLGLAQTICNALDKPL 57 >gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] Length = 234 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N +RKE LT +++ + G + IS ETGK ++ LA+ D ++ L Sbjct: 9 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 65 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+E +TQK++ + + S I+ LE+G++ +++ +I +A L+T + LL Sbjct: 14 GQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAEVLNTSISFLL 72 >gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R RK+ K++Q E+ R G A+ I+ +E K +++ + LAH L T L L Sbjct: 2 NHVREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLF 59 >gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 247 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N +RKE LT +++ + G + IS ETGK ++ LA+ D ++ L Sbjct: 22 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 78 >gi|229822080|ref|YP_002883606.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567993|gb|ACQ81844.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 488 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ A + R+ R E +LT ++ TG A S +S +E G+ + + + +A Sbjct: 1 MAPAAETSPLTVGRRIRHFRTERRLTLDDLARLTGSAASQLSLVENGRREVRVSLLQQIA 60 Query: 71 HTLDTPLWKLLK 82 LD LL+ Sbjct: 61 RALDVSPADLLE 72 >gi|169627539|ref|YP_001701188.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239506|emb|CAM60534.1| Putative transcriptional regulator [Mycobacterium abscessus] Length = 85 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 1 MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP R +++P A R R R IR +TQ+++ R+G ++ + ++E G+ Sbjct: 1 MPTRPSQNDPERVVAWNRIRQTVGARIRQIRTSQDMTQEQLALRSGVTRNVLIDVEHGRR 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + + + +A L+ + LL Sbjct: 61 GLLYERLFDIAAALEVTVGALL 82 >gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] Length = 291 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N R +RK+ +Q+++ R ++ +S+ E+ ++++IIL+ + + Sbjct: 1 MSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDD 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|167587597|ref|ZP_02379985.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 223 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E+K T EI + ++S++E + I+I +++ +A L+ PL L+ Sbjct: 9 GQRIRRLRRESKKTLLEIATEAKLSVGFLSQVERNLTGISISSLVNVAKALNVPLGALI 67 >gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+A LTQ+++ + G ++ IS E G I+I + L++ Sbjct: 11 GQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYG 62 >gi|187919154|ref|YP_001888185.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717592|gb|ACD18815.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 28/53 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ +I ++ +AH L Sbjct: 15 GSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67 >gi|75758644|ref|ZP_00738762.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904095|ref|ZP_04068190.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228931022|ref|ZP_04093978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|74493903|gb|EAO57001.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228828643|gb|EEM74323.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855180|gb|EEM99744.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 91 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 11/86 (12%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNI---------RKEAKLTQKEIRNRTGFAQSWI 51 M + +D ++ E+ NF+ + R + L+Q+E+ +G AQ I Sbjct: 1 MNKTDKDLREDIKKVVSEQGFV--NFQTLEIVGVLMAERVKRGLSQRELSKLSGVAQKTI 58 Query: 52 SELETGKSTINIDNMIILAHTLDTPL 77 S +E+G+ +I+ ++ LA L L Sbjct: 59 SHIESGEDIPSIETVVKLAKHLGYEL 84 >gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 254 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +++R L+Q ++ G ++ +++ E KS +D +I L + L Sbjct: 1 MSFRDNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 261 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +++R L+Q ++ G ++ +++ E KS +D +I L + L Sbjct: 1 MSFRDNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|229011075|ref|ZP_04168269.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|228750247|gb|EEM00079.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 405 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L LL Sbjct: 5 LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|227485487|ref|ZP_03915803.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236486|gb|EEI86501.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN + RK+A Q E+ G ++ IS +E G ++ + +A L + ++ + Sbjct: 5 NNLADFRKKAGYNQAELGGLVGVSRQTISLIERGDYNPSVTVALTIAKVLGVDINEIFR 63 >gi|226360021|ref|YP_002777799.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226238506|dbj|BAH48854.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 196 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R + + R + S +S +ETG I +D ++ +A L T L +L++ Sbjct: 13 QRIRGLRVARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVE 71 >gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile QCD-63q42] Length = 149 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R + L Q E+ +QS I E + T ++++ LA + L Sbjct: 1 MFGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|197286055|ref|YP_002151927.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194683542|emb|CAR44394.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 97 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R+ LT E+ + G +Q S E G + +++D + A Sbjct: 2 NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 61 Query: 73 LDTPLWKLLK 82 L L + Sbjct: 62 FGISLSDLFQ 71 >gi|163735152|ref|ZP_02142588.1| transcriptional regulator [Roseobacter litoralis Och 149] gi|161391610|gb|EDQ15943.1| transcriptional regulator [Roseobacter litoralis Och 149] Length = 111 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 27/67 (40%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + R +Q E+ G +Q+ +SE+E G ++ ++ + + L Sbjct: 2 SKSNRELINEALTLARLYWGYSQVEMAEALGMSQAMVSEIERGSKSVTLETLERYSEALG 61 Query: 75 TPLWKLL 81 +L+ Sbjct: 62 VKKSQLM 68 >gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 180 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTEFF 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|70729495|ref|YP_259233.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68343794|gb|AAY91400.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 242 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 23/41 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 F + + R+ A+L Q E+ R G Q+ IS+LE GKS Sbjct: 3 FKDRLKTARRHAQLNQTELAERAGLTQTSISDLERGKSKAT 43 >gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145] gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145] Length = 174 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RK+ + TG +++ + ++E +S+ + + LA + L Sbjct: 6 HTVARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQESSPTLATLWKLATGFNVSLSW 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|323525513|ref|YP_004227666.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323382515|gb|ADX54606.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 84 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ L+Q+ + + ++++S +E G+ + ++ + + LD L Sbjct: 7 VGEVLRALRRRKGLSQEALAHAAQMERNYVSLIELGRHSPSVRVIWKICAALDVTPSAFL 66 >gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602] gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602] Length = 188 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R E + + TG +++ + ++E G+S+ + + +A L+ + L+ Sbjct: 9 GSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSEFLE 68 >gi|325680471|ref|ZP_08160020.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8] gi|324107840|gb|EGC02107.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8] Length = 501 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK K+TQ ++ +TG + +S LE+ T +I+ + L L Sbjct: 7 QLLAETVEGRRKSLKITQAQLAEKTGINRGLLSRLESQDFTPSIEQLQALGEALGFEPTD 66 Query: 80 LL 81 + Sbjct: 67 MF 68 >gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 238 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 49 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 108 Query: 80 LLK 82 + Sbjct: 109 FFR 111 >gi|253991748|ref|YP_003043104.1| hypothetical protein PAU_04276 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638523|emb|CAR67144.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783198|emb|CAQ86363.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 203 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R R E +TQK + QS+I+++E G+ +++ + +AH L Sbjct: 121 EYQLVIKALRKARIEKGITQKSLAQALDRPQSFIAKIENGERRLDVVEFVHIAHLLSVDH 180 >gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 175 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ + ++ TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 TP 68 >gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus] Length = 139 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+++ +++ + G + ++S++E G + + + +A L L Sbjct: 22 IRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRRPSAEVLNQIAKALRVSAEVL 76 >gi|209547110|ref|YP_002279028.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538354|gb|ACI58288.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 207 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + R N + R+++ + E+ R+G ++ + E+E G + +I + A Sbjct: 13 DDVERVSATVSQNLKIFRRDSGFSLDELSRRSGVSKGMLVEIEKGTANPSIATLCRAATA 72 Query: 73 LDTPLWKLL 81 L + + Sbjct: 73 LGVSVADFV 81 >gi|167737542|ref|ZP_02410316.1| DNA-binding protein [Burkholderia pseudomallei 14] Length = 187 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|193067087|ref|ZP_03048056.1| transcriptional regulator PuuR [Escherichia coli E110019] gi|192959677|gb|EDV90111.1| transcriptional regulator PuuR [Escherichia coli E110019] Length = 185 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|114567544|ref|YP_754698.1| hypothetical protein Swol_2033 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338479|gb|ABI69327.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 64 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK Q+++ G + I+ +E K ++ + LA L T + +L Sbjct: 3 NNIKELRKALGYRQEDLAACLGVTRQTINAIENQKYNPTLELAMKLAKLLGTNVEELF 60 >gi|300173314|ref|YP_003772480.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811] gi|299887693|emb|CBL91661.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811] Length = 280 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK ++QKE+ G +QS IS +E G ++ + + L+ P+ Sbjct: 9 IRKTRKSRGISQKELGQLIG-SQSMISRIENGLTSPTDRALQQICDILNVPIVDYF 63 >gi|290889566|ref|ZP_06552656.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] gi|290480764|gb|EFD89398.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] Length = 198 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + R+E +TQ ++ ++ +S E GK+ ++D ++ L+ D L Sbjct: 7 MVFSEIISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 66 Query: 80 LLK 82 L+K Sbjct: 67 LIK 69 >gi|307727984|ref|YP_003911197.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307588509|gb|ADN61906.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 98 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R RK + + Q+ + +++++S+LE G+ + +D + +A + Sbjct: 4 RTGLGRALRAARKTSGVPQEGLDVT---SRTYLSQLERGRQSPTLDKLEAIAGGMGVHPL 60 Query: 79 KLL 81 LL Sbjct: 61 SLL 63 >gi|284045281|ref|YP_003395621.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949502|gb|ADB52246.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 201 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +E S A R +R E LT E+ G A S +S LETG + + Sbjct: 14 PANEHTSSQADDDVEERVRGRLRQLRDERGLTLAEVAFAAGMATSTLSRLETGARRLTLA 73 Query: 65 NMIILAHTLDTPLWKLL 81 ++ LA L +L+ Sbjct: 74 HLPALARALGIATDELV 90 >gi|253565785|ref|ZP_04843240.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251946064|gb|EES86471.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 100 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 29/52 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+AK+TQ E+ R G +S+IS +E+G++ + + + + L Sbjct: 40 GKIIEDARKKAKVTQAELARRIGSNRSYISRVESGQTDLRTSTLYRIMNALG 91 >gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074] Length = 211 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE T + TG + S +S LE+G +++ ++ +A D PL +L+ Sbjct: 27 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 86 >gi|229015370|ref|ZP_04172387.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] gi|228745926|gb|EEL95912.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] Length = 240 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++R +TQ+++ ++ ++ IS+ E GKS ++ N++ L++ + + LLK Sbjct: 23 GKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDSLLK 82 >gi|223983720|ref|ZP_03633892.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] gi|223964312|gb|EEF68652.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] Length = 119 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 25/64 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + RK +++ ++ ++ A +I+ +E ++ L LD + + Sbjct: 11 KAFGQAIKAARKAKGISRNQLADKMNIAPRYIASIENSGQHPSLQIFYELVTLLDVSVDQ 70 Query: 80 LLKP 83 P Sbjct: 71 FFFP 74 >gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 198 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 19 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 78 >gi|209809535|ref|YP_002265073.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238] gi|208011097|emb|CAQ81517.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238] Length = 215 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IR + LT +E RTG A+S +S++E + + + LA LD + ++ Sbjct: 36 LGKRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLASGLDIDIPQIF 95 Query: 82 KP 83 +P Sbjct: 96 EP 97 >gi|192290671|ref|YP_001991276.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284420|gb|ACF00801.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 89 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R +R TQ ++ Q IS +E +S + + +A L + + + Sbjct: 4 KLLATNVRRLRLARGWTQDQLAAALEVEQGIISLIENKRSNPTLLMLEAIAEALGSDVAE 63 Query: 80 LLK 82 L K Sbjct: 64 LFK 66 >gi|169334539|ref|ZP_02861732.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis DSM 17244] gi|169259256|gb|EDS73222.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis DSM 17244] Length = 104 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RK+ +TQ+++ + S +S +E G ++ ++ +A+ L+ Sbjct: 8 LGKRLKEERKKQGVTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNIANVLNVS 62 >gi|167917945|ref|ZP_02505036.1| DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 187 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|163737060|ref|ZP_02144478.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] gi|161389664|gb|EDQ14015.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] Length = 205 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP + P + + R RK+ LT + + + G + ++S++E +T Sbjct: 1 MP-QTSATPKPAKTRSSPGPMLGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNAT 59 Query: 61 INIDNMIILAHTLDTPL 77 + + +A L+ L Sbjct: 60 PTLGTLAQIASALEVGL 76 >gi|94986482|ref|YP_594415.1| transcriptional regulator [Lawsonia intracellularis PHE/MN1-00] gi|94730731|emb|CAJ54093.1| predicted transcriptional regulators [Lawsonia intracellularis PHE/MN1-00] Length = 80 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R++ L+Q+ + +++I LE G S + +I LA+ L + Sbjct: 9 FGVMLRTLRQQRGLSQQTLAEFADVERNYIYYLEKGLSDPTLGVLIGLANGLGLNFSE 66 >gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 199 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79 >gi|60683798|ref|YP_209648.1| hypothetical protein pDx14.2p11 [Bacillus mycoides] gi|60416575|emb|CAI40627.1| hypothetical protein [Bacillus mycoides] Length = 240 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++R +TQ+++ ++ ++ IS+ E GKS ++ N++ L++ + + LLK Sbjct: 23 GKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDSLLK 82 >gi|238794119|ref|ZP_04637735.1| hypothetical protein yinte0001_32260 [Yersinia intermedia ATCC 29909] gi|238726517|gb|EEQ18055.1| hypothetical protein yinte0001_32260 [Yersinia intermedia ATCC 29909] Length = 75 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R+ R +TQ+ + + G QS+I+++E G+ +++ + +A L + Sbjct: 8 EYQSVIKSLRDQRIAKGITQESLASALGRPQSFIAKVENGERRLDVVEFVHIAKLLGVKV 67 Query: 78 WKLL 81 +L Sbjct: 68 EDVL 71 >gi|303231732|ref|ZP_07318455.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] gi|302513681|gb|EFL55700.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-049-V-Sch6] Length = 89 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 2/50 (4%) Query: 34 KLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWKLL 81 ++Q+++ + G ++S++S+LE G S ++I+ + +A+ L+ +LL Sbjct: 2 GISQRQLADVVGISRSYLSKLECGYGISGVSIEVVFKIAYCLNVSTSQLL 51 >gi|229060102|ref|ZP_04197472.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603] gi|228719142|gb|EEL70752.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603] Length = 66 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R E TQ+++ R G ++ I+ +E K ++ +A PL ++ Sbjct: 1 MLNNRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAKAFGKPLEEV 60 Query: 81 LK 82 + Sbjct: 61 FE 62 >gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 468 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 59 >gi|283795792|ref|ZP_06344945.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076424|gb|EFE13788.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 66 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M VNN + IR++ + Q E+ TG+ I +E G+ST + + M+ ++ + + Sbjct: 1 MAVVNNIKEIREQRGIYQDELAEATGYCTKTIGRIERGESTPSAEFMLRISKYFNMMVED 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|149920828|ref|ZP_01909291.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149818346|gb|EDM77798.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 120 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +R+ LTQ+ + R + I LE G + ++ ++ L L+ L L+ Sbjct: 16 FGRHVRGLRRARGLTQEGLAERADLSADTIRRLENGGFSPSLVTLVKLTRGLELRLSTLI 75 >gi|149203644|ref|ZP_01880613.1| transcriptional regulator, XRE family with cupin sensor [Roseovarius sp. TM1035] gi|149142761|gb|EDM30803.1| transcriptional regulator, XRE family with cupin sensor [Roseovarius sp. TM1035] Length = 211 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +R+ T + RTG A S I ++E G+ + + +N+I +A D + Sbjct: 24 RADLGARMKAVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDIGME 83 Query: 79 KLL 81 +L Sbjct: 84 RLF 86 >gi|307324371|ref|ZP_07603579.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890102|gb|EFN21080.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 203 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + ++ R + S +S +ETG I++D + +A L T L +L Sbjct: 11 LVRKRIRGLRSALGWSLDDLAARCYLSPSTLSRIETGHRRISLDQLSAIARALGTTLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|300774128|ref|ZP_07083997.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300760299|gb|EFK57126.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 195 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R + LTQ+++ G I +E G+ + +A LD + +L Sbjct: 9 NLSQKRSDKGLTQQKLAEIAGLTTRTIQRIEKGEVIPQGYTLQRIAEALDISIEEL 64 >gi|239930441|ref|ZP_04687394.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291438799|ref|ZP_06578189.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291341694|gb|EFE68650.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 191 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 492 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 26 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 82 >gi|124514630|gb|EAY56142.1| putative transcriptional regulator, XRE family [Leptospirillum rubarum] Length = 164 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ LTQ ++ N G QS +S LE +G+ +++ ++ LA LDT L Sbjct: 31 AYQIRELREQRGLTQTDLANLLGKRQSVVSRLESSGEKGLSLKTLLELASALDTALVLKF 90 Query: 82 KP 83 P Sbjct: 91 VP 92 >gi|160897879|ref|YP_001563461.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363463|gb|ABX35076.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 306 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R F ++ R+ R+ +L+Q+ + + +S +ETG++ + + ++ L L Sbjct: 38 PSARSPFGDHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRLVERLGV 97 Query: 76 PLWK 79 PL + Sbjct: 98 PLRE 101 >gi|58039234|ref|YP_191198.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58001648|gb|AAW60542.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 212 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R R E S A + N R R L+Q+++ G I + E G + + Sbjct: 20 PDRARPESRSSAAAGPVDVHVGNRIRLRRTLMGLSQEKLGEALGLTFQQIQKYERGANRV 79 Query: 62 NIDNMIILAHTLDTPL 77 + LA LD P+ Sbjct: 80 GASRLYDLAQVLDVPI 95 >gi|21232573|ref|NP_638490.1| hypothetical protein XCC3143 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767353|ref|YP_242115.1| hypothetical protein XC_1021 [Xanthomonas campestris pv. campestris str. 8004] gi|21114370|gb|AAM42414.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572685|gb|AAY48095.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 97 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R ++Q+E+ G +S + ++E G+ + ++ ++ L+ L+ Sbjct: 25 FGKAVRAARTARDISQEELATLAGIERSHMGKIERGQHMPTLALILRVSIALNDSAANLM 84 Query: 82 K 82 Sbjct: 85 T 85 >gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+ E+ R+G QS +S +E+G+ D + + L + + Sbjct: 4 GARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAEFF 62 >gi|325291275|ref|YP_004267456.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324966676|gb|ADY57455.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 66 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E + Q+++ G + I +E+G ++ I + L L L Sbjct: 4 KRMKIARMECDMKQEDLAKAVGVTRQTIGMIESGNYNPTLNLCIAICKALGKTLDGLF 61 >gi|323651063|ref|YP_004243490.1| immunity repressor protein [Bacillus subtilis subsp. natto] gi|323461486|dbj|BAJ76903.1| immunity repressor protein [Bacillus subtilis subsp. natto] Length = 161 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 RE+ RK+ L+Q ++ N TG + ++IS LE G+ + LA L Sbjct: 4 REQFDLSKYLLEKRKQKGLSQTQVANDTGLSSAYISMLEKGERKRPTQAVIKKLATALSI 63 Query: 76 PLWKLLK 82 P ++L+ Sbjct: 64 PNIEMLQ 70 >gi|296124304|ref|YP_003632082.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296016644|gb|ADG69883.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 380 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R R A LTQ+++ ++G +++ ++ +E K ++ + L+ TL + L Sbjct: 27 ISANQVRKFRLLAGLTQQQLAEQSGISRTAVTAIEGAKLVPSVAAALALSRTLGASVEDL 86 Query: 81 L 81 Sbjct: 87 F 87 >gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 420 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + R+ L+Q+E+ + G + S + + E G+ + + +A L L Sbjct: 6 GDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 64 >gi|197286053|ref|YP_002151925.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356567|ref|ZP_03840954.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683540|emb|CAR44391.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163323|gb|EEI48250.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 117 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ +T E+ G +Q S E G+ I++D + +L++ L Sbjct: 24 KIVGARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYLLSYIFKVKL 81 >gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 204 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+E+ ++ G ++ +S+ E+ +ST +++ +II++ +LK Sbjct: 4 ADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILK 63 >gi|159905131|ref|YP_001548793.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886624|gb|ABX01561.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 209 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IR E L+ + TG ++ + ++E + I ++ +A+ L Sbjct: 31 HVISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTISTILKIANGLKISFTS 90 Query: 80 LL 81 LL Sbjct: 91 LL 92 >gi|117619340|ref|YP_857051.1| Cro/CI family transcriptional regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560747|gb|ABK37695.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 200 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ +L+ E+ R G ++ + E+E G + +I + LA L + ++ Sbjct: 22 VSRRLKEYRQQGRLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81 >gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 374 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E LTQ++I N G +++ +S+ ETG+S +I + LA + + +L+ Sbjct: 7 ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 65 >gi|323343728|ref|ZP_08083955.1| XRE family transcriptional regulator [Prevotella oralis ATCC 33269] gi|323095547|gb|EFZ38121.1| XRE family transcriptional regulator [Prevotella oralis ATCC 33269] Length = 101 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RK +TQK++ G + +IS LE GK + + +A L Sbjct: 43 YSELLKEERKRQNITQKQLAEMVGKKREYISSLENGKVDMQLSTFFRIAGALG 95 >gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 65 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 NN RKE +Q+ + + G ++ I LE G+ ++ L+ + L P Sbjct: 3 NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYDPSLPLAFKLSAVFGCKIEDLFIP 62 >gi|319760977|ref|YP_004124914.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115538|gb|ADU98026.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 97 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + + G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRTERGIAQESLAHLAGIERSHMGKVERGEHMPTLAIIFKIAGALECSTAVLM 84 >gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 175 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ + ++ TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 TP 68 >gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 66 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK K++Q E+ G ++ I+ +E K ++ LA L + +L Sbjct: 1 MVENRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAEELGATVDEL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 199 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79 >gi|282880753|ref|ZP_06289450.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] gi|281305374|gb|EFA97437.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella timonensis CRIS 5C-B1] Length = 112 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +RDE + R E LTQ+E+ R G ++ IS LE G S I+I Sbjct: 27 ERDEHERKVETALHAYRIGEAIKKARVEQNLTQEELGERIGVKRAQISRLEKGYS-ISIP 85 Query: 65 NMIILAHTLDTPLWKL 80 M + L L Sbjct: 86 TMSKVFKALGVSTASL 101 >gi|256544375|ref|ZP_05471750.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256399907|gb|EEU13509.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 301 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 10 HLSDAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 HL + + ++++I + +RK ++Q ++ G + IS +E G + + + Sbjct: 3 HLEEILEKDKLILLAKKIKEVRKNRNISQLDLSVEAGIDRKTISRIENGVNEPSFSTLYK 62 Query: 69 LAHTLD 74 +++ L+ Sbjct: 63 ISYILN 68 >gi|255014654|ref|ZP_05286780.1| hypothetical protein B2_12149 [Bacteroides sp. 2_1_7] Length = 103 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ER F + RK+ K+TQ E+ + G +++IS +E G + Sbjct: 23 KVGSPEREEFRKEAYSYCVGQIISDARKQEKMTQSELAEKVGTNKTYISRIEKGIIEPGV 82 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + L + +++KP Sbjct: 83 GLFFRIIDALGLKI-EIVKP 101 >gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851 [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 18 ERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER F +RKE +TQ E+ ++ +Q + E G+ I + ++ +A Sbjct: 19 ERDFFIALGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRRRIKVSSLPFVAQIFS 78 Query: 75 TPLWKLL 81 PL +L Sbjct: 79 VPLEELF 85 >gi|254500071|ref|ZP_05112223.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222441369|gb|EEE48047.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 103 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDN 65 + D R+ + R+EA L+Q+E+ + G ++IS++E+GK + D Sbjct: 6 NAKTTDDKRQELRLQAGAWLKAAREEAGLSQRELAGKMGALYYTFISQIESGKGRLPADR 65 Query: 66 MIILAHTLDT 75 + A L Sbjct: 66 YAVYAEALGV 75 >gi|116490172|ref|YP_809716.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|116090897|gb|ABJ56051.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] Length = 192 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + R+E +TQ ++ ++ +S E GK+ ++D ++ L+ D L Sbjct: 1 MVFSEIISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|114769621|ref|ZP_01447231.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114549326|gb|EAU52208.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 190 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +RK +T E+ + G + W+S++E S+ I+ + LA PL Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPL 67 >gi|116695951|ref|YP_841527.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530450|emb|CAJ96797.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 196 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M + ++ P +D + R+ R A T ++ + G ++S IS++E G +T Sbjct: 1 MAKTEQPTPEAAD-SKSATLTLGVKLRHARLVAGYTLLQLAGKAGCSESLISKIERGLAT 59 Query: 61 INIDNMIILAHTLDT 75 + + LA LDT Sbjct: 60 PSFTTLHRLAVALDT 74 >gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 171 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +N+RK L+Q+E+ + + +S+ E G S + + +I LA LDT + L Sbjct: 1 MLNENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSVPDSNMLISLADELDTSVSIL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 457 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + R+ L+Q+E+ + G + S + + E G+ + + +A L L Sbjct: 43 GDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 101 >gi|261493122|ref|ZP_05989658.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496455|ref|ZP_05992838.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307888|gb|EEY09208.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311210|gb|EEY12377.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 64 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R+ L+Q+E+ + G I E G N+ + LA L+ L Sbjct: 2 NKIRQFRRAIGLSQQELASVIGVTTGAIGFYERGLREPNLATIKKLAEALNCKPADL 58 >gi|323342462|ref|ZP_08082694.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463574|gb|EFY08768.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 177 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + LT +E+ +R+ + ++S+LE ++ +I + + L T L K Sbjct: 4 GKRLKQLRTKNGLTLEELASRSELTKGFLSQLENDLTSPSIATLNDIVEALGTNLSVFFK 63 >gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 492 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 26 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 82 >gi|229166643|ref|ZP_04294395.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228616897|gb|EEK73970.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 404 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A+ L LL Sbjct: 4 LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKALQYIANKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|212710302|ref|ZP_03318430.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens DSM 30120] gi|212687109|gb|EEB46637.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens DSM 30120] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ L+ E+ + +G +++ +S+LE+G S ID + +A L PL L Sbjct: 10 GQKVRLLRQARNLSLSELSHLSGISKAALSKLESGDSNPRIDTLESIAAALRFPLSDLFT 69 >gi|71803685|ref|YP_132230.2| hypotethical transcriptional regulator [Photobacterium profundum SS9] Length = 101 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 33/56 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR+ + Q E+ + ++S++SE+E+GK +N++ + ++ D P+ L+ Sbjct: 6 LKIIRQFHNVKQVELAQKLNLSKSYLSEIESGKKPVNLELLDKYSNLFDIPVSSLV 61 >gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 R IR+ A L+Q+ + R+G S IS +E GK ++ + + Sbjct: 11 LGQRLRVIRERAGLSQRALAKRSGIPNSTISLIEGGKINPSVSTLRRV 58 >gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 199 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79 >gi|50119905|ref|YP_049072.1| putative regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49610431|emb|CAG73876.1| putative regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 84 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R E +TQ+ + N G QS+++++E G+ +++ + +AH L +L+ Sbjct: 16 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDASTVLE 72 >gi|76809409|ref|YP_332574.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|167823130|ref|ZP_02454601.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167909924|ref|ZP_02497015.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|226194494|ref|ZP_03790092.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254190850|ref|ZP_04897357.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254260931|ref|ZP_04951985.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76578862|gb|ABA48337.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|157938525|gb|EDO94195.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|225933579|gb|EEH29568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254219620|gb|EET09004.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 187 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|309798569|ref|ZP_07692844.1| conserved domain protein [Streptococcus infantis SK1302] gi|322387445|ref|ZP_08061055.1| transcriptional regulator [Streptococcus infantis ATCC 700779] gi|308117805|gb|EFO55206.1| conserved domain protein [Streptococcus infantis SK1302] gi|321141974|gb|EFX37469.1| transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 69 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDMTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|326316490|ref|YP_004234162.1| helix-turn-helix domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373326|gb|ADX45595.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 187 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R+ L+ E+ R A+S +S+LE G +++ + LA L + +L Sbjct: 12 LLASAVRRERERLGLSVSELAKRARIAKSTLSQLEAGSGNPSLETLWALATALGVQVTRL 71 Query: 81 L 81 + Sbjct: 72 I 72 >gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 156 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R TQK + + G + IS E ++ N +++I LA + + +L Sbjct: 7 NKIKELRIAKGWTQKSLAEKLGVSSQVISNWERAYTSPNQEDLIKLAKVFNVTIDYIL 64 >gi|255281619|ref|ZP_05346174.1| conserved domain protein [Bryantella formatexigens DSM 14469] gi|255267686|gb|EET60891.1| conserved domain protein [Bryantella formatexigens DSM 14469] Length = 123 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F +N R + TQ+E+ + G + +++ +LE K T ++ L+ Sbjct: 5 KTLFATMVKNARMDRHWTQEELAEKLGISLTYLGDLERHKGTPSLPLFCKAMRLLNLSAD 64 Query: 79 KLLKP 83 + P Sbjct: 65 DYVYP 69 >gi|209517719|ref|ZP_03266556.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209501894|gb|EEA01913.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 291 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R ++Q ++ G +Q IS +E+G+S D ++ LA TLD PL + Sbjct: 15 LGSLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPLRE 72 >gi|197104892|ref|YP_002130269.1| hypothetical protein PHZ_c1427 [Phenylobacterium zucineum HLK1] gi|196478312|gb|ACG77840.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 416 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R R + +EI R G + +I +LETG + + D + LA L Sbjct: 51 KIAGEQLRLARLARGYSLEEIGERVGATRQFIHQLETGARSASDDLIAALADELGVTAAF 110 Query: 80 LLKP 83 L +P Sbjct: 111 LGEP 114 >gi|167835768|ref|ZP_02462651.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 187 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens] Length = 198 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 SD + ++IRK L+Q+E+ R G S IS +E + +I ++ Sbjct: 4 ASRPESDPQEAPALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSL 63 Query: 67 IILAHTLDTPLWKLL 81 + + + + Sbjct: 64 RKVLSGIPMSMVEFF 78 >gi|307946156|ref|ZP_07661491.1| putative toxin-antitoxin system, antitoxin component, Xre family [Roseibium sp. TrichSKD4] gi|307769820|gb|EFO29046.1| putative toxin-antitoxin system, antitoxin component, Xre family [Roseibium sp. TrichSKD4] Length = 258 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+E ++Q + +R Q +S LETG++ + + ++ L P+ K L Sbjct: 11 FGQALRALRRELNISQSALADRLSSTQRHLSFLETGRAQPSTQMVDRISRVLGLPISKRL 70 >gi|295100170|emb|CBK89259.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 117 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK A L+Q+ + + G + IS E ++ N + + +L+ + L Sbjct: 1 MLGENILRLRKGANLSQEALGDIIGVTRQMISNWELEETAPNPEQLKLLSKAFNVSADDL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|294790981|ref|ZP_06756139.1| putative Helix-turn-helix domain protein [Scardovia inopinata F0304] gi|294458878|gb|EFG27231.1| putative Helix-turn-helix domain protein [Scardovia inopinata F0304] Length = 169 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P +K + D+ + R + R++R + T +EI + G + ++SE+E G+ Sbjct: 61 PNQKASKNRSGDSDVSLRKVQGGILRSLRTKDHKTLREISEKAGVSLGYLSEVERGQKEA 120 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + D + + L L +L Sbjct: 121 SSDLLTSITEALGVRLSDML 140 >gi|229160744|ref|ZP_04288736.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228622759|gb|EEK79593.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 405 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ + LL Sbjct: 5 LGEKIKALRKEKKLTQTELSG-SELTKSMLSQIENGKATPSMKTLQYIADKLECEMSFLL 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|291287416|ref|YP_003504232.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884576|gb|ADD68276.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + +R + +T +++ +G + S++S+LE + + ++ +A L Sbjct: 3 FGKTVKELRLKHNMTLRDLAKTSGCSISFLSQLERDLISPTVASLRKIADALGV 56 >gi|225571103|ref|ZP_03780120.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] gi|225160184|gb|EEG72803.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] Length = 63 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK L Q+++ R+G ++ I +E K ++ + LA LDT + +L Sbjct: 3 NNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYNPTLELAMKLARLLDTTVEELF 60 >gi|197104922|ref|YP_002130299.1| hypothetical protein PHZ_c1457 [Phenylobacterium zucineum HLK1] gi|196478342|gb|ACG77870.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 111 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP ++ P S + R + R+ A L+Q+++ G A S +S +E G+ Sbjct: 7 MPFARQPNPVFSAEYQQVREV----LVAARRAAGLSQRDLAAALGKAGSHVSMIERGQRR 62 Query: 61 INIDNMIILAHTLDTPLWKL 80 +++ +A L L Sbjct: 63 VDLLEFHRIALALGCDPASL 82 >gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 410 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LTQ ++ + G A++ + +E G+ + +I LA L + LL Sbjct: 7 LGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGERRPSNAELIKLAGFLKVSVHDLL 66 Query: 82 K 82 + Sbjct: 67 R 67 >gi|157692960|ref|YP_001487422.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032] gi|157681718|gb|ABV62862.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032] Length = 111 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + R E + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 120 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RKEA LTQK+I + G Q + E+GK + + A + + L Sbjct: 1 MFPERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|307545411|ref|YP_003897890.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307217435|emb|CBV42705.1| probable transcriptional regulator [Halomonas elongata DSM 2581] Length = 196 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + TG ++S++S++E G + +I + LA L+ + +L Sbjct: 21 RLKLLRKKLGVTLEALAEGTGLSKSYLSKVERGLNNPSIAAALKLAKALNVQVEELF 77 >gi|294500383|ref|YP_003564083.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294350320|gb|ADE70649.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 77 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +R + LTQ+++ ++ G + +S +E G+ ++ + + + ++ L +L Sbjct: 13 NNVKVVRVKMNLTQQQLADKVGITRQTVSLIEKGQYNPSLKLCLQICYVVEETLDELF 70 >gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] Length = 376 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E LTQ++I N G +++ +S+ ETG+S +I + LA + + +L+ Sbjct: 9 ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 67 >gi|322420048|ref|YP_004199271.1| two componentXRE family transcriptional regulator [Geobacter sp. M18] gi|320126435|gb|ADW13995.1| two component transcriptional regulator, XRE family [Geobacter sp. M18] Length = 231 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F R +R+E L+Q ++ + + +IS +E GK ++ ++ LA L+T Sbjct: 5 EAFGIVIRRLRRERTLSQDKLSIASCLDRKFISNIEGGKQQPSLVSIFALASALNTS 61 >gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] Length = 376 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E LTQ++I N G +++ +S+ ETG+S +I + LA + + +L+ Sbjct: 9 ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 67 >gi|134298756|ref|YP_001112252.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051456|gb|ABO49427.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 106 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK ++ ++ +G +Q++IS+LE G+ ID++ + +L L + Sbjct: 9 KITKLRKSVGWSKNKLAKESGLSQAYISQLEAGQKQPTIDSLDRICSSLGLTLAEFF 65 >gi|9630190|ref|NP_046617.1| putative SPbeta phage repressor [Bacillus phage SPBc2] gi|16079161|ref|NP_389985.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310009|ref|ZP_03591856.1| hypothetical protein Bsubs1_11581 [Bacillus subtilis subsp. subtilis str. 168] gi|221314331|ref|ZP_03596136.1| hypothetical protein BsubsN3_11502 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319253|ref|ZP_03600547.1| hypothetical protein BsubsJ_11428 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323529|ref|ZP_03604823.1| hypothetical protein BsubsS_11557 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342058|sp|O31943|YONR_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized HTH-type transcriptional regulator yonR gi|2634522|emb|CAB14020.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025543|gb|AAC13038.1| putative SPbeta phage repressor [Bacillus phage SPbeta] Length = 108 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R +Q+ + + G + + E GK+ ++ + L++ L L Sbjct: 1 MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFL 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 374 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E LTQ++I N G +++ +S+ ETG+S +I + LA + + +L+ Sbjct: 7 ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 65 >gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 274 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R+E +++ ++ G + I+ E G N D ++ +A D + L Sbjct: 3 LFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIAEYFDVTVDYL 62 Query: 81 L 81 + Sbjct: 63 V 63 >gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 174 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK+ L+Q+++ N + +S+ E G S + D++I L+ L T + L Sbjct: 1 MLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|289705933|ref|ZP_06502309.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289557341|gb|EFD50656.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 132 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 2 PRRKRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 PR + P + + + R + R++R+ T +E+ + + ++SE+E G+ Sbjct: 18 PRPRAATPDIKERSMPLLRHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKE 77 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 + + + + LD PL LL+ Sbjct: 78 ASSELLASICQALDIPLSYLLR 99 >gi|239631261|ref|ZP_04674292.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525726|gb|EEQ64727.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 222 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK +TQ+++ + + IS E KS ++ ++ L+ DT L +LL Sbjct: 23 FGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQLL 82 Query: 82 K 82 K Sbjct: 83 K 83 >gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|297193838|ref|ZP_06911236.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197721253|gb|EDY65161.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 289 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185] Length = 191 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|257417719|ref|ZP_05594713.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|45827617|gb|AAS78452.1| BcrR [Enterococcus faecalis] gi|257159547|gb|EEU89507.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 204 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LTQ+++ + +++ IS+ E+GK N++++ ++ + +LL Sbjct: 3 FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNMESLKCISKFFSVTIDELL 62 >gi|83589149|ref|YP_429158.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572063|gb|ABC18615.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 78 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + IF + +R++ L+ +++ + G ++ I++ E G + ++D +I +A D L Sbjct: 6 KKIFALRLKFLREQHNLSTQKLADALGLKSKGAITQFEKGIISPSVDTLISIADFFDVSL 65 Query: 78 WKLL 81 L+ Sbjct: 66 DYLV 69 >gi|319743893|gb|EFV96285.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 150 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E KLTQ ++ + + IS E G N D + L+ + + Sbjct: 7 VGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKTIDDFF 66 Query: 82 KP 83 P Sbjct: 67 PP 68 >gi|297153601|gb|ADI03313.1| transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 161 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ E+ R G +++ +S+LE GK I+ + LA L PL LL Sbjct: 1 MSGSELARRAGLSKATLSQLEAGKGNPTIETLDALAIALRIPLTDLLT 48 >gi|170783251|ref|YP_001711585.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157821|emb|CAQ03026.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 152 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R+ L+Q+++ G +Q+ +S E+G S + + AH L+ + ++P Sbjct: 50 LRRVREHRSLSQEQLGALMGVSQATVSSFESGASEPKLATIRRYAHALNVVVEHSVRP 107 >gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1] gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1] Length = 255 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +++R +Q+ G+++S + E G+S ID +I L+ P+ L+K Sbjct: 6 KNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSEPPIDRLIDLSDHFKLPIDILVK 64 >gi|134096404|ref|YP_001101479.1| hypothetical protein HEAR3251 [Herminiimonas arsenicoxydans] gi|133740307|emb|CAL63358.1| Conserved hypothetical protein; putative cupin domain [Herminiimonas arsenicoxydans] Length = 198 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P ++ E A L R+ R A LT ++ + ++S IS++E G +T Sbjct: 9 PGTEQLEKKSPTASL------GLRLRHARLVAGLTLLQLAQKAACSESLISKIERGSATP 62 Query: 62 NIDNMIILAHTLDTPLWKLL 81 ++ + LA L+T + L+ Sbjct: 63 SLAMLHRLAMALETNISSLM 82 >gi|89053166|ref|YP_508617.1| anaerobic benzoate catabolism transcriptional regulator [Jannaschia sp. CCS1] gi|88862715|gb|ABD53592.1| transcriptional regulator, XRE family with shikimate kinase activity [Jannaschia sp. CCS1] Length = 297 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + AIL + + R R +++++ + +G + ++++LE G I+I + +A Sbjct: 12 IDAAILALQARVGDRVRAARASKRISRRVLSETSGVSPRYLAQLEGGDGNISIGLLFRVA 71 Query: 71 HTLDTPLWKLL 81 LD L L+ Sbjct: 72 DALDVSLEALV 82 >gi|53721872|ref|YP_110857.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|76819198|ref|YP_337591.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|83718127|ref|YP_439754.1| DNA-binding protein [Burkholderia thailandensis E264] gi|126443021|ref|YP_001062243.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|134279324|ref|ZP_01766037.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167616328|ref|ZP_02384963.1| DNA-binding protein [Burkholderia thailandensis Bt4] gi|167723169|ref|ZP_02406405.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167742145|ref|ZP_02414919.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167827698|ref|ZP_02459169.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167914434|ref|ZP_02501525.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167922336|ref|ZP_02509427.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|226197706|ref|ZP_03793281.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237509861|ref|ZP_04522576.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242312177|ref|ZP_04811194.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254183291|ref|ZP_04889883.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254189926|ref|ZP_04896435.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254193108|ref|ZP_04899543.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254300194|ref|ZP_04967640.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52212286|emb|CAH38308.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|76583671|gb|ABA53145.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|83651952|gb|ABC36016.1| DNA-binding protein [Burkholderia thailandensis E264] gi|126222512|gb|ABN86017.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|134249743|gb|EBA49824.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|157810269|gb|EDO87439.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157937603|gb|EDO93273.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|169649862|gb|EDS82555.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184213824|gb|EDU10867.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|225930315|gb|EEH26327.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|235002066|gb|EEP51490.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242135416|gb|EES21819.1| DNA-binding protein [Burkholderia pseudomallei 1106b] Length = 80 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 L ++ + R +R+ A LTQ ++ R QS++S++E G+ ++I Sbjct: 2 LPSIHHPRYVVLRTHLRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 54 >gi|88810779|ref|ZP_01126036.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis Nb-231] gi|88792409|gb|EAR23519.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis Nb-231] Length = 128 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M KR E L A L + ++ + R R+ +TQ + N G +++S+LE GK Sbjct: 42 MAALKRGEEELIPAELGDALMQGESPIRVWRQYRGVTQAALANAAGITAAYVSQLEAGKR 101 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 +++ + +A L + LL Sbjct: 102 QPSVEVLRAMARKLSVDIDDLL 123 >gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium] Length = 75 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ R +R + +TQ+E+ +R G + I+ +E K + +++ +A P+ + + Sbjct: 8 NSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKYSPSLEAAFRIAEVFGVPIGDVFQ 67 >gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 471 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R+ +++Q ++ G + S+++ +E + I + ++ LA +L++ Sbjct: 9 GSRVQRLRRAKRVSQADLAVALGISASYLNLIEHNRRRITVPLLMKLAGYFGIEPGELVE 68 >gi|261758784|ref|ZP_06002493.1| transcriptional regulator [Brucella sp. F5/99] gi|261738768|gb|EEY26764.1| transcriptional regulator [Brucella sp. F5/99] Length = 340 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|260778027|ref|ZP_05886920.1| predicted transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606040|gb|EEX32325.1| predicted transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 207 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGERIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|91779338|ref|YP_554546.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|296157048|ref|ZP_06839885.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|91691998|gb|ABE35196.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia xenovorans LB400] gi|295892934|gb|EFG72715.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ +I ++ +A+ L Sbjct: 15 GSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIANALGV 67 >gi|89897132|ref|YP_520619.1| hypothetical protein DSY4386 [Desulfitobacterium hafniense Y51] gi|89336580|dbj|BAE86175.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 184 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I NN + IR+E KL+ ++ + T ++ + ++E G+S+ I + +A L P Sbjct: 6 QIVANNLKRIREEMKLSLDKVADLTDVSKGMLRQIEAGESSPTIKTIWKIASGLKIP 62 >gi|53718580|ref|YP_107566.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|126440552|ref|YP_001058052.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126453277|ref|YP_001065289.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167718493|ref|ZP_02401729.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167814662|ref|ZP_02446342.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167844691|ref|ZP_02470199.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167893219|ref|ZP_02480621.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167901673|ref|ZP_02488878.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|217419739|ref|ZP_03451245.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237811203|ref|YP_002895654.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242316552|ref|ZP_04815568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254181462|ref|ZP_04888059.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254196408|ref|ZP_04902832.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|52208994|emb|CAH34933.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|126220045|gb|ABN83551.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126226919|gb|ABN90459.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|169653151|gb|EDS85844.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184212000|gb|EDU09043.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397043|gb|EEC37059.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237504755|gb|ACQ97073.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242139791|gb|EES26193.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] Length = 187 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62 >gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 130 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +RKE LTQ ++ G ++S I+ ET + + + + +A + + Sbjct: 1 MTFSDRLKELRKEKNLTQGDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|324992002|gb|EGC23924.1| transcriptional regulator [Streptococcus sanguinis SK405] Length = 71 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|325280366|ref|YP_004252908.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324312175|gb|ADY32728.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 104 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%) Query: 9 PHLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 H+ +R F + R+ LTQ+E+ N G ++ IS +E GK Sbjct: 15 KHIGKKGTPKRDQFEADLNSSLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGK- 73 Query: 60 TINIDNMIILAHTLDTP 76 + + + + Sbjct: 74 NLTFSTIARVFKAMGIS 90 >gi|297184311|gb|ADI20428.1| predicted transcriptional regulators [uncultured alpha proteobacterium EB080_L43F08] Length = 190 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +RK +T E+ + G + W+S++E S+ I+ + LA PL Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPL 67 >gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 D + R + + +RK L+Q ++ G +S E G + I+ +I +A Sbjct: 7 SGDTVDTLRSVVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIA 66 Query: 71 HTLDTPLWKLL 81 + +LL Sbjct: 67 TVFNVAPGELL 77 >gi|291557516|emb|CBL34633.1| Helix-turn-helix [Eubacterium siraeum V10Sc8a] Length = 221 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQK++ G AQ+ +S E GK ++ ++ A + LL Sbjct: 5 FPRILSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRKCGLEFLVKAADYYNVSTDYLL 64 >gi|194017717|ref|ZP_03056327.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC 7061] gi|194010617|gb|EDW20189.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC 7061] Length = 113 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + R E + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 3 LIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|209885004|ref|YP_002288861.1| transcriptional regulator, XRE family with cupin sensor [Oligotropha carboxidovorans OM5] gi|209873200|gb|ACI92996.1| transcriptional regulator, XRE family with cupin sensor [Oligotropha carboxidovorans OM5] Length = 189 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + F+ +R+ + + +E ++TG ++S +S++E G ++ + LA + +L Sbjct: 4 VLATRFKELREGRRWSLREAADKTGVSKSMLSKIERGLTSPTATVLGKLAEGFGISISQL 63 Query: 81 L 81 + Sbjct: 64 V 64 >gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62 >gi|148379637|ref|YP_001254178.1| phage regulatory protein [Clostridium botulinum A str. ATCC 3502] gi|148289121|emb|CAL83215.1| phage regulatory protein [Clostridium botulinum A str. ATCC 3502] Length = 78 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82 R +R + TQ+ + R G Q +IS LE G+ + I + L+H L KLL+ Sbjct: 6 LRKLRTKLGYTQETLGERIGVEQPYISRLENGEIEFMTIGKLKKLSHALQVHPVKLLE 63 >gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|73538955|ref|YP_299322.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|72122292|gb|AAZ64478.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + + ++ R+G +++ IS++E G+++ + L+ PL LL Sbjct: 16 VRVERESREWSLADLAERSGVSKAMISKIERGEASPTATVLGKLSGAFGLPLSMLL 71 >gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 502 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R +R+E LTQ + G + S++++LE + I + ++ L Sbjct: 25 RVVRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTER 84 Query: 73 LDTP 76 D P Sbjct: 85 FDLP 88 >gi|17549183|ref|NP_522523.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431435|emb|CAD18113.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 5 LQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60 >gi|115359028|ref|YP_776166.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284316|gb|ABI89832.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ L+Q + G +S+ + +E GK + + + ++ L L +L Sbjct: 10 GARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQGKHSATLQMLARISQGLGVSLQELF 69 Query: 82 K 82 + Sbjct: 70 E 70 >gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 217 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ RKE K+TQ ++ + G + +S+ ETGK + M L L + Sbjct: 17 DQIMIGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKCMPDASLMPELCEQLGISI 76 Query: 78 WKLL 81 L Sbjct: 77 NDLF 80 >gi|315655103|ref|ZP_07908005.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|315490584|gb|EFU80207.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 179 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R P + R R +R+ LT +++ + + ++SE+E G+ + + Sbjct: 71 RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 130 Query: 66 MIILAHTLDTP 76 + + + L+ P Sbjct: 131 LASICYALEAP 141 >gi|326201174|ref|ZP_08191046.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988742|gb|EGD49566.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 111 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R++ LT+++ + +I ++E G+ T++++ + + L Sbjct: 12 GIRIRTAREKIGLTREQFAEAVDLSALYIGQIERGQRTMSLNTFVRILECLHVDP 66 >gi|302876393|ref|YP_003845026.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302579250|gb|ADL53262.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 118 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPL 77 + + IRKE LTQ+E ++ G ++ + ++E G++ + + L+ P+ Sbjct: 1 MLSEKLKQIRKEMHLTQQEFADKLGISRGYYCDMERGRNKGTNVKVISKLSDVTGKPM 58 >gi|167839435|ref|ZP_02466119.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 80 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 L ++ + R +R+ A LTQ ++ R QS++S++E G+ ++I Sbjct: 2 LPSIHHPRYVVLRTHLRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 54 >gi|114799924|ref|YP_759016.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740098|gb|ABI78223.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 384 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R A +TQ++ G ++ + +E G+ + ++ LA + Sbjct: 6 SSVDPKELGERLRRARTRADVTQEQAAQIIGLSRPTLVAIEKGQRRPQPEELVALAAAYN 65 Query: 75 TPLWKLLK 82 + +LL+ Sbjct: 66 VGVAELLR 73 >gi|313898840|ref|ZP_07832374.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956422|gb|EFR38056.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 150 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + RK++ L+Q+E+ + G ++ IS+ ET ++ +I +A L +L+ Sbjct: 3 LGNSLFHARKKSGLSQEEVAEKIGVSRQTISKWETNETVPDIYQSKKMAKLYRISLDELI 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|306826280|ref|ZP_07459614.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431556|gb|EFM34538.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 116 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 39/80 (48%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 ++K+ ++S ++E+ + N + +R L Q E+ G ++ IS LE + T + Sbjct: 31 KKKKMCYNVSKLRIKEKGMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTPS 90 Query: 63 IDNMIILAHTLDTPLWKLLK 82 + + ++ + P+ + + Sbjct: 91 VVIALKISQIFNEPVESVFR 110 >gi|304390894|ref|ZP_07372846.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325777|gb|EFL93023.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 112 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKEA L+Q E+ G + I +E +++ ++ L L +L Sbjct: 53 ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELF 110 >gi|299069355|emb|CBJ40621.1| putative transcriptional regulator [Ralstonia solanacearum CMR15] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +L+ E+ R G ++S +S++E + + + LA+ L L L Sbjct: 5 LQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60 >gi|293402420|ref|ZP_06646556.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304083|gb|EFE45336.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 72 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+E+ + G + I +E G+ +I I + L L L Sbjct: 5 KIKMARMELDMSQEELAKKVGATRQTIGLIEAGRYNPSIKLCINICIALHKHLDDLF 61 >gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 161 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE+ LTQ+E+ + + I E ++ + + +I++A T L +L+ Sbjct: 3 FNEQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNPPDFEMIILIAKTFGVSLDELI 62 >gi|269956326|ref|YP_003326115.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305007|gb|ACZ30557.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 145 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R+ R+ A L+Q E+ R G A S +S +E+G + + L + P L Sbjct: 3 NIRHARERAGLSQAELARRAGIAPSNLSAIESGTRPASAAMVNRLLDAMGRPSVAL 58 >gi|219669930|ref|YP_002460365.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540190|gb|ACL21929.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 81 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWKL 80 RK ++TQ ++ R G ++S++ET I++ + +A P K Sbjct: 16 GLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPISLKTLFAIADLFHVPPHKF 75 Query: 81 LK 82 L+ Sbjct: 76 LE 77 >gi|167772580|ref|ZP_02444633.1| hypothetical protein ANACOL_03958 [Anaerotruncus colihominis DSM 17241] gi|167665058|gb|EDS09188.1| hypothetical protein ANACOL_03958 [Anaerotruncus colihominis DSM 17241] Length = 101 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N R + L+Q+E+ R + + +E+E + N++ + ++ Sbjct: 26 KFILACNLLEYRLDKHLSQEEMAFRIDLSVTSYAEIERAQVHTNLEILDYISRATGLSPA 85 Query: 79 KLLKP 83 +LL P Sbjct: 86 QLLTP 90 >gi|163761537|ref|ZP_02168609.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] gi|162281251|gb|EDQ31550.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] Length = 216 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 5 KRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 + A+ R + R RK+ +T ++ TG + +S++E G Sbjct: 11 PQILSQDPHAVREPRENNLERAIGHEVRAYRKKLGITVTDLSAATGVSIGMLSKIENGNI 70 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + ++ + L+ L P+ K Sbjct: 71 SPSLTTLQSLSRALGVPVTAFFK 93 >gi|154500023|ref|ZP_02038061.1| hypothetical protein BACCAP_03681 [Bacteroides capillosus ATCC 29799] gi|150271621|gb|EDM98878.1| hypothetical protein BACCAP_03681 [Bacteroides capillosus ATCC 29799] Length = 118 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RKE LTQ+++ + + + I+++E + + + LA + L L+ Sbjct: 9 LGDALRAARKEKSLTQEQLADESHVSTKQIADIEKARRNPSYLILKALAKVIHLSLDSLM 68 Query: 82 KP 83 P Sbjct: 69 YP 70 >gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 193 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER I + +R E+ LT + + + +G +++ IS +E G+++ + + L L Sbjct: 10 ERSI-GERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARICAALGLSL 68 >gi|331002826|ref|ZP_08326340.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413315|gb|EGG92683.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] Length = 104 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ +TQ+E+ G Q I + E S ++ D + ++ + L +L++ Sbjct: 4 IRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELIE 60 >gi|315034706|gb|EFT46638.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315578681|gb|EFU90872.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 83 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NF+ R++ KLTQKE+ + ++ ++ +LE+G S+ + +I+A PL L Sbjct: 12 NFKMEREKLKLTQKELAEKLDLSEVYVRKLESGASSPSTKKAVIIAEFFGKPLDYLF 68 >gi|291453422|ref|ZP_06592812.1| DNA-binding protein [Streptomyces albus J1074] gi|291356371|gb|EFE83273.1| DNA-binding protein [Streptomyces albus J1074] Length = 289 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +++ R +QS IS LE G+ +I+ ++ L Sbjct: 10 NPTVRRRRL-GQELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 68 Query: 73 LDTP 76 + Sbjct: 69 YEVE 72 >gi|289422894|ref|ZP_06424724.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] gi|289156699|gb|EFD05334.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] Length = 212 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IR E LTQ+++ + ++ +S E K+ +I+ +I ++ + L +L+ Sbjct: 3 FGEQIKKIRAEKNLTQQKMADMLNVSRQAVSNWENDKNLPDIEMIINMSRAFNMTLDELV 62 >gi|270291920|ref|ZP_06198135.1| conserved hypothetical protein [Streptococcus sp. M143] gi|322375120|ref|ZP_08049634.1| putative helix-turn-helix protein [Streptococcus sp. C300] gi|270279448|gb|EFA25290.1| conserved hypothetical protein [Streptococcus sp. M143] gi|321280620|gb|EFX57659.1| putative helix-turn-helix protein [Streptococcus sp. C300] Length = 287 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGNVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLQQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|254454592|ref|ZP_05068029.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198268998|gb|EDY93268.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 189 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R +RK LT + G + W+S++E S +I ++ +A LD Sbjct: 7 PEIHTLGADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVLDVS 66 Query: 77 LWKLLK 82 + L + Sbjct: 67 VSSLFR 72 >gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652] gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 231 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 38 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 97 Query: 80 LLK 82 + Sbjct: 98 FFR 100 >gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6] Length = 381 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ LTQ E+ + + IS+ ET +I + LA L + +L++ Sbjct: 7 GTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHGLPDISLLEPLAAALGVSVLELMQ 66 >gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 189 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RKE +LTQ+++ R G +S ETG + ++ ++ LA D + ++ Sbjct: 7 GSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSNMPDLSILVELADFYDVDIRDII 65 >gi|254383003|ref|ZP_04998358.1| hypothetical protein SSAG_02660 [Streptomyces sp. Mg1] gi|194341903|gb|EDX22869.1| hypothetical protein SSAG_02660 [Streptomyces sp. Mg1] Length = 299 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + R +R+ A LTQ + + G + + E+GKS + + + LA L Sbjct: 1 MPVRQFDGHLMRRVRRAADLTQGAVAEKLGVSVPAVVGWESGKSVPDGEKLPALAQALGM 60 Query: 76 PLWKLL 81 L +L Sbjct: 61 DLDELF 66 Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 3/82 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKS 59 +P + D + R+ + ++R +A +Q + TG + ++ E G+ Sbjct: 51 LPALAQALGMDLDELFPRRL--PPDLADLRCDAGYSQYQTAAITGTRSAGPVANAERGRR 108 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 ++ + +LA + LL Sbjct: 109 PLSDSFLPLLAQAYGVSVPDLL 130 >gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62 >gi|118592886|ref|ZP_01550274.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] gi|118434420|gb|EAV41073.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] Length = 191 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ +Q+E+ R G +IS+LE K ++ + + + L + Sbjct: 14 VGLRLRAIREAHGYSQRELAKRAGVTNGFISQLEAAKINTSLSALKRVLDGIPIGLSEFF 73 >gi|53716415|ref|YP_105155.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121597232|ref|YP_991127.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381577|ref|YP_001025521.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126442447|ref|YP_001064011.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126446100|ref|YP_001077587.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126458019|ref|YP_001076933.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167000254|ref|ZP_02266073.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167725174|ref|ZP_02408410.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167744105|ref|ZP_02416879.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167821307|ref|ZP_02452987.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167829646|ref|ZP_02461117.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167899756|ref|ZP_02487157.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167908062|ref|ZP_02495267.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167916410|ref|ZP_02503501.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167924271|ref|ZP_02511362.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217424415|ref|ZP_03455914.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226194042|ref|ZP_03789643.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237509646|ref|ZP_04522361.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238561521|ref|ZP_00441977.2| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242313514|ref|ZP_04812531.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254177387|ref|ZP_04884043.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254182642|ref|ZP_04889236.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254185685|ref|ZP_04892203.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254192472|ref|ZP_04898911.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254203094|ref|ZP_04909456.1| DNA-binding protein [Burkholderia mallei FMH] gi|254208427|ref|ZP_04914776.1| DNA-binding protein [Burkholderia mallei JHU] gi|254296435|ref|ZP_04963891.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52422385|gb|AAU45955.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121225030|gb|ABM48561.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126221938|gb|ABN85443.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126231787|gb|ABN95200.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238954|gb|ABO02066.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746139|gb|EDK53217.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751114|gb|EDK58182.1| DNA-binding protein [Burkholderia mallei JHU] gi|157806343|gb|EDO83513.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157933371|gb|EDO89041.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160698427|gb|EDP88397.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169649230|gb|EDS81923.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184213177|gb|EDU10220.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217392880|gb|EEC32903.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225933987|gb|EEH29973.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|235001851|gb|EEP51275.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238524516|gb|EEP87949.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136753|gb|EES23156.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243063746|gb|EES45932.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826389|gb|ABN00454.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 179 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 56 >gi|13541016|ref|NP_110704.1| transcription regulator [Thermoplasma volcanium GSS1] Length = 194 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +RK ++QK++ TG +QS+I+ LE G + + L K Sbjct: 10 LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEK 63 >gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911] gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911] Length = 69 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK + L+Q+E+ G ++ I+ +E K ++ LA +L + +L Sbjct: 3 NQIKEVRKSSGLSQEELAKACGVSRQTINAIENNKYDPSLALAFQLAESLGMTVDQLF 60 >gi|302559931|ref|ZP_07312273.1| PbsX family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302477549|gb|EFL40642.1| PbsX family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 165 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 15 LGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73 >gi|290960421|ref|YP_003491603.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260649947|emb|CBG73063.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 80 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +FR R EA L+ ++ + G ++S + ++E G++ + N+ +A L + LL P Sbjct: 6 KSFRRRRIEAGLSVTDLARQAGVSKSHLCDVENGRAGFSPKNLKKIADILGCTIRDLLLP 65 >gi|300771128|ref|ZP_07081004.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761798|gb|EFK58618.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 205 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + IRK +T +++ +R G ++ IS++E ++ ++ +I + L+ L + K Sbjct: 23 SRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGALEIDLTEFFK 81 >gi|258653119|ref|YP_003202275.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556344|gb|ACV79286.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 225 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + IR+ + T +E+ +G + ++S++E ++ ++ ++ + TL PL L + Sbjct: 19 GAKLKAIRRAQRRTLEEVAEASGLTKGFLSKIERDLASASVAALLRICATLGIPLSSLFE 78 >gi|228993734|ref|ZP_04153639.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228765945|gb|EEM14594.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 77 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R VNN +R E + +Q E+ NR G ++ I+ +E + ++ +AH L Sbjct: 5 QRGSLVNNLIVLRAEKRWSQTELANRVGVSRQTIASIEANRYNPSLILAFEIAHVLGKEF 64 Query: 78 WKLLK 82 ++ + Sbjct: 65 HEVFQ 69 >gi|167769353|ref|ZP_02441406.1| hypothetical protein ANACOL_00679 [Anaerotruncus colihominis DSM 17241] gi|167668321|gb|EDS12451.1| hypothetical protein ANACOL_00679 [Anaerotruncus colihominis DSM 17241] Length = 114 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78 I N R +R +TQ+++ +G + +S LE K + + +A L Sbjct: 5 QIIQKNIRYLRTTLGITQEQLAFISGLTSACVSRLERDSKCNPTVQTLDHIAEGLKIQTA 64 Query: 79 KLL 81 +L Sbjct: 65 QLF 67 >gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IRK + Q E G +Q +S+ E K ++ +A P + L Sbjct: 62 YARRIREIRKNLGMNQAEFAAALGVSQGSVSKWEAAKEQPRTTALLKIAELAGLPSFSLF 121 >gi|170737741|ref|YP_001779001.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819929|gb|ACA94511.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T ++ R G + ++S++E G S + ++ + L P Sbjct: 14 IRDLRKHRKITLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64 >gi|24372846|ref|NP_716888.1| transcriptional regulator, putative [Shewanella oneidensis MR-1] gi|24346951|gb|AAN54333.1|AE015570_7 transcriptional regulator, putative [Shewanella oneidensis MR-1] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK L+Q+E+ R G S IS +E + ++ ++ + + L Sbjct: 4 GASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62 >gi|21222594|ref|NP_628373.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256786334|ref|ZP_05524765.1| DNA-binding protein [Streptomyces lividans TK24] gi|9857155|emb|CAC04034.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 141 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|150016139|ref|YP_001308393.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902604|gb|ABR33437.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 184 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I + + IR + +L+ E TG +++ + ++E G+S + + ++ L Sbjct: 7 IIGSKLKEIRNKRELSLDEAAKLTGVSKAMLGQIERGQSNPTVSTLWKISTGLKVS 62 >gi|186680864|ref|YP_001864060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463316|gb|ACC79117.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc punctiforme PCC 73102] Length = 531 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + RK L+Q+E+ TG +QSWI ++E G+ +++ ++L L+ Sbjct: 474 LLGEQILQARKNLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQLLLRKVLNM 528 >gi|258515463|ref|YP_003191685.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779168|gb|ACV63062.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 116 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + +R A L QK I G QS IS+ E+G+ I+ D + +A P+ Sbjct: 6 KTIGANIKELRDNAGLGQKHIAGYLGVDQSLISKFESGERAISSDMLDKIAALFCCPVSV 65 Query: 80 LLKP 83 + P Sbjct: 66 IASP 69 >gi|167768271|ref|ZP_02440324.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] gi|167709795|gb|EDS20374.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] Length = 84 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ G + I +E G + + + L+ L L Sbjct: 24 KRIKIARLECDMSQEDLAKTVGVTRQTIGLIEAGNYNPTLKLCLAICKALNKTLDDLF 81 >gi|167590295|ref|ZP_02382683.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T E+ +R G + ++S++E G S + ++ + L P Sbjct: 14 IRDLRKHRKVTLNELADRIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64 >gi|134281019|ref|ZP_01767728.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|134247325|gb|EBA47410.1| DNA-binding protein [Burkholderia pseudomallei 305] Length = 187 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|85706378|ref|ZP_01037472.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] gi|85669151|gb|EAQ24018.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] Length = 468 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R +R++ TQ ++ + S+I+ LE + ++++ ++ LA Sbjct: 2 AKTLIGPRLRQLRRDRGQTQADMARMLNVSPSYINLLENNQRSLSVQMLMSLADAYAVDW 61 Query: 78 WKLLK 82 L + Sbjct: 62 RDLTR 66 >gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae 35/02] Length = 236 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + + RK L+Q+ + +QS I+ LE+G N+ LA LD + L Sbjct: 4 FKDRLKEARKNKNLSQENLAKLAEVSQSTIAALESG-RNKKATNIAKLAKILDVSAFWL 61 >gi|227821987|ref|YP_002825958.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340987|gb|ACP25205.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 466 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +RK+ LTQ + + S+I+ +E + + + ++ LA L L Sbjct: 8 LGPRLRRLRKDLGLTQAHMAADLDVSPSYIALMERNQRPVTAEVLLRLAKAYKIDLSSL 66 >gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] Length = 313 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ+++ + + +S ETG + ++ ++ LA D + +LL Sbjct: 10 LKQCRKEKNLTQEQLAEKFEVSARTVSRWETGINMPDLSILVQLAEYYDVEIRELL 65 >gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] Length = 189 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|167749863|ref|ZP_02421990.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|167657175|gb|EDS01305.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|291531021|emb|CBK96606.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 221 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE LTQK++ G AQ+ +S E GK ++ ++ A + LL Sbjct: 5 FPRILSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRECGLEFLVKAADYYNVSTDYLL 64 >gi|160884700|ref|ZP_02065703.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|237717098|ref|ZP_04547579.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237721923|ref|ZP_04552404.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262405867|ref|ZP_06082417.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647828|ref|ZP_06725380.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806223|ref|ZP_06765070.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|156109735|gb|EDO11480.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|229443081|gb|EEO48872.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229448792|gb|EEO54583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262356742|gb|EEZ05832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636736|gb|EFF55202.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446479|gb|EFG15099.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295085704|emb|CBK67227.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 131 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + + +R E LTQ+++ + + S ++E G++ + + + +A L+ Sbjct: 6 KKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSAL 65 Query: 79 KLL 81 +L Sbjct: 66 ELF 68 >gi|254250154|ref|ZP_04943474.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184] gi|124876655|gb|EAY66645.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184] Length = 242 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 71 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 130 Query: 83 P 83 P Sbjct: 131 P 131 >gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora maris AB-18-032] Length = 178 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R++R++ +T +++ + + +S++E G + ++ + LA DT + +L Sbjct: 1 MLGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATDPSLSTLRKLAQVFDTSIAEL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 118 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +RK+ TQ+++ G Q +S ETG I++ + LA Sbjct: 10 GEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLYG 61 >gi|303235946|ref|ZP_07322549.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella disiens FB035-09AN] gi|302483819|gb|EFL46811.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella disiens FB035-09AN] Length = 66 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R+ R ++ +E+ + S+IS +E +++I + + L L L Sbjct: 8 GNKIRDTRTAQGISVRELAKLSNVNPSYISRVENAHYSVSIVTLAKICKPLGLELVLL 65 >gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] Length = 119 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R A LTQKE+ N+ + S +S E + + + ++ + + L Sbjct: 1 MLGKRLKQLRNSAGLTQKELANKMNISSSAVSMYEADRRDPDTETLVKFSKVFNVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|293402337|ref|ZP_06646474.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304184|gb|EFE45436.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 286 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE KLTQ ++ R +S+ ETGKS + M+ L L + +LL Sbjct: 14 GKFIARCRKEKKLTQAQLAERLSITDRAVSKWETGKSMPDSSIMLELCKLLGITVNELL 72 >gi|189353554|ref|YP_001949181.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189337576|dbj|BAG46645.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T E+ R G + ++S++E G S + ++ + L P Sbjct: 14 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64 >gi|169335374|ref|ZP_02862567.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] gi|169258112|gb|EDS72078.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] Length = 225 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N +RK+ ++Q+ N G ++ IS+ ET S D +++++ D L +L Sbjct: 3 LGNKLYTLRKQKGISQETAANEIGVSRQTISKWETNSSYPEFDKLVLISKLYDISLDEL 61 >gi|168204639|ref|ZP_02630644.1| transcriptional Regulator, XRE family [Clostridium perfringens E str. JGS1987] gi|170663734|gb|EDT16417.1| transcriptional Regulator, XRE family [Clostridium perfringens E str. JGS1987] Length = 71 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + E + N + R + LTQ+ + + G IS E + +++ ++ LA L Sbjct: 2 KVKNEEVNLSKNLKENRLKKNLTQRALAEKCGLDFHTISLNENKERNPSLEIILRLALGL 61 Query: 74 DTPLWKLL 81 + L +LL Sbjct: 62 NISLEELL 69 >gi|167461386|ref|ZP_02326475.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 183 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 7/68 (10%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-------INIDNMIILAHTLD 74 +R+E K + +E ++ + ++I ++E G + + D++ LA Sbjct: 4 LGKYLEQVRREKKFSLREAAQKSDLSYTYIRDIELGMNRKTKKKVKPSPDSLKKLAEAYG 63 Query: 75 TPLWKLLK 82 ++LL+ Sbjct: 64 IEYYELLQ 71 >gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + L L Sbjct: 4 GASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 62 >gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R KL+Q+E+ RTG S IS +E+ S ++ + + + L + Sbjct: 6 GSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64 >gi|85373672|ref|YP_457734.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594] gi|84786755|gb|ABC62937.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594] Length = 207 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R TQK++ R G QS IS++E G + I +++ +A LD L Sbjct: 9 AASIKVARIAKGFTQKQLGERVGLPQSHISKIEGGNVDLQISSLVEIARALDLEL 63 >gi|16080420|ref|NP_391247.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221311317|ref|ZP_03593164.1| hypothetical protein Bsubs1_18271 [Bacillus subtilis subsp. subtilis str. 168] gi|221315644|ref|ZP_03597449.1| hypothetical protein BsubsN3_18187 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320560|ref|ZP_03601854.1| hypothetical protein BsubsJ_18155 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324844|ref|ZP_03606138.1| hypothetical protein BsubsS_18306 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342185|sp|O32237|RGHRB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator rghRB gi|2635880|emb|CAB15372.1| putative transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] Length = 139 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F R +R+ KLT ++ +G + + IS++E GK T + LA L P L Sbjct: 4 FGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|329848824|ref|ZP_08263852.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843887|gb|EGF93456.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 75 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R++R + +Q E+ R G ++ ++ +E GK +++ LA+ + P+ ++ P Sbjct: 5 VRDLRMQRGWSQGELGERLGVSRQAVNAIEVGKHDPSLELTFKLAYLFNLPVEEIFHP 62 >gi|331266049|ref|YP_004325679.1| transcriptional repressor, putative [Streptococcus oralis Uo5] gi|326682721|emb|CBZ00338.1| transcriptional repressor, putative [Streptococcus oralis Uo5] Length = 69 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLFLCQSICRCLGKTLDQLF 62 >gi|293373775|ref|ZP_06620121.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298482606|ref|ZP_07000791.1| prophage L54a [Bacteroides sp. D22] gi|292631265|gb|EFF49897.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298271313|gb|EFI12889.1| prophage L54a [Bacteroides sp. D22] Length = 131 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + + +R E LTQ+++ + + S ++E G++ + + + +A L+ Sbjct: 6 KKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSAL 65 Query: 79 KLL 81 +L Sbjct: 66 ELF 68 >gi|320010212|gb|ADW05062.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 285 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + +R R + R +R+ +T +E+ +R +QS IS LE G+ +I+ ++ Sbjct: 2 PTNVNPTVRRRRL-GQELRRLREIKGMTAEEVADRLLVSQSKISRLENGRRSISQRDVRD 60 Query: 69 LAHTLDT 75 L + Sbjct: 61 LCGVYEV 67 >gi|149007308|ref|ZP_01830966.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225859187|ref|YP_002740697.1| hypothetical protein SP70585_1461 [Streptococcus pneumoniae 70585] gi|307127009|ref|YP_003879040.1| hypothetical protein SP670_0875 [Streptococcus pneumoniae 670-6B] gi|147761112|gb|EDK68080.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225720333|gb|ACO16187.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|306484071|gb|ADM90940.1| conserved domain protein [Streptococcus pneumoniae 670-6B] gi|332074745|gb|EGI85219.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 69 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ + G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDLTQGQLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|219667009|ref|YP_002457444.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537269|gb|ACL19008.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 184 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I NN + IR+E KL+ ++ + T ++ + ++E G+S+ I + +A L P Sbjct: 6 QIVANNLKRIREEMKLSLDKVADLTDVSKGMLRQIEAGESSPTIKTIWKIASGLKIP 62 >gi|330990791|ref|ZP_08314747.1| hypothetical protein SXCC_00701 [Gluconacetobacter sp. SXCC-1] gi|329762231|gb|EGG78719.1| hypothetical protein SXCC_00701 [Gluconacetobacter sp. SXCC-1] Length = 260 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF + R T +I +++ + + +S +E G +++ + +A L ++ Sbjct: 154 EIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIEAGLRNPSLETVYRIAEGLSVSVYY 213 Query: 80 LL 81 L+ Sbjct: 214 LI 215 >gi|306826072|ref|ZP_07459408.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431788|gb|EFM34768.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 287 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGNVYKEIRESKGLTQEEVCGDV-LSRTSLSKIESGKTTPKYENMEFLLRQVNMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 4 RKRDEP--HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 RK+D +S A + + N + RK+ LTQ+ + + G Q +S +E G Sbjct: 30 RKKDTQEVQVSQATRKLAKLVGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDIAP 89 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + +A TL + L + Sbjct: 90 KLERLPDVAATLRCSVADLFR 110 >gi|302189655|ref|ZP_07266328.1| e14 prophage; putative phage repressor [Pseudomonas syringae pv. syringae 642] Length = 138 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +R A +Q + G++ QS + E+G + ++ ++A L P Sbjct: 22 ESLAQRLQRLRNAAGKSQAALAKLCGWSSQSRVGNYESGTREPTLGDIELMAKALGVPYG 81 Query: 79 KLL 81 LL Sbjct: 82 VLL 84 >gi|291534706|emb|CBL07818.1| Predicted transcriptional regulator with C-terminal CBS domains [Roseburia intestinalis M50/1] Length = 78 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I N R R+ +TQ E+ R + I +E G+ +++D + + H L++ Sbjct: 9 EIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSP 66 >gi|291521206|emb|CBK79499.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 128 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R K+ Q E+ + + IS +E G +D+ I + LD LL Sbjct: 12 GKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDVLDVTPDYLL 70 >gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 373 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++RKE +TQ+E+ + G ++ +S+ E+G+S +I + LA + + +LL Sbjct: 7 GANIASLRKEKGVTQEELADYLGISKPAVSKWESGQSYPDILLLPRLAAYFNRTVDELL 65 >gi|262383697|ref|ZP_06076833.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298375948|ref|ZP_06985904.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] gi|301311863|ref|ZP_07217785.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|262294595|gb|EEY82527.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298266985|gb|EFI08642.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] gi|300829965|gb|EFK60613.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 100 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ER F + RK+ K+TQ E+ + G +++IS +E G + Sbjct: 20 KVGSPEREEFRKEAYSYCVGQIISDARKQEKMTQSELAEKVGTNKTYISRIEKGIIEPGV 79 Query: 64 DNMIILAHTLDTPLWKLLKP 83 + L + +++KP Sbjct: 80 GLFFRIIDALGLKI-EIVKP 98 >gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 191 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|241666493|ref|YP_002984577.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861950|gb|ACS59615.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 38 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 97 Query: 80 LLK 82 + Sbjct: 98 FFR 100 >gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK++ L+Q+E+ R G S IS +E + ++ ++ + + L + Sbjct: 3 VGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLGGIPLSLTEFF 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66] Length = 136 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK ++Q+++ G ++ I++ E G+S ++ LA D L +L Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 291 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RKE +Q+++ + ++ I++ ETG +I N+ +A L LL Sbjct: 5 QTLRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISLDDLL 62 >gi|307708405|ref|ZP_07644871.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|307615504|gb|EFN94711.1| conserved domain protein [Streptococcus mitis NCTC 12261] Length = 69 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175] gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175] Length = 191 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|293570008|ref|ZP_06681088.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291587380|gb|EFF19264.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 154 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RN+RK+ LTQ+E+ + ++ IS E G S +++N+ +LA + L+ Sbjct: 3 NRLRNLRKKNNLTQEELSLQLKVSRQTISNWERGFSQPDLENLHLLASFFKVTVSYLI 60 >gi|262184314|ref|ZP_06043735.1| putative transcription regulator [Corynebacterium aurimucosum ATCC 700975] Length = 115 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + +L R R R + +T +E+ + + ++SELE G+ ++ + Sbjct: 15 PAQSTRTPEPLL--REALGLTLRAFRADKGVTLRELASVARVSPGYLSELERGRKEVSSE 72 Query: 65 NMIILAHTLDTPLWKLL 81 + + H LD + +L Sbjct: 73 LLASVCHALDVSVSDVL 89 >gi|237728418|ref|ZP_04558899.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226909896|gb|EEH95814.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 97 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + + G +S + ++E G+ + + +A L+ L+ Sbjct: 25 FGAAVRALRMERGIAQESLAHLAGIERSHMGKVERGEHMPTLALIFKIAGALECSTAVLM 84 >gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 195 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR + +T + TG ++S +S LE G+ +++ ++ +A PL +L+ Sbjct: 16 GARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLLPIALAHQVPLDQLV 74 >gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] Length = 187 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RKE LTQ ++ + +S+ E G +I + LA LD L +L+K Sbjct: 10 ITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVGFPDIKLLEPLADVLDISLLELMK 66 >gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016] gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 257 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+E LTQ I + ++ IS+ E G+ NI+ + +L+ + + L+ Sbjct: 53 FAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYLI 112 >gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + + +RKE LT EI +Q S E G + I+ID+++++A + Sbjct: 14 KIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSLVMIADFFKISI 71 >gi|172058590|ref|YP_001815050.1| helix-turn-helix domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991111|gb|ACB62033.1| helix-turn-helix domain protein [Exiguobacterium sibiricum 255-15] Length = 294 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +RK+ LTQK++ N G +Q+ IS++E+G + +D + L+ L P+ Sbjct: 13 LRRLRKKHNLTQKDLAN--GICSQAEISKIESGTHSPTVDLLYALSRRLQVPI 63 >gi|168183949|ref|ZP_02618613.1| ATP-dependent DNA helicase [Clostridium botulinum Bf] gi|182672887|gb|EDT84848.1| ATP-dependent DNA helicase [Clostridium botulinum Bf] Length = 78 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG---KSTINIDNMIILAHTLDT 75 R R+ + Q+++ +R G Q ++S+LE K +N+D + LA L+ Sbjct: 2 IRIFREHKGIRQEDLASRLGITQPYLSKLENNSIYKINVNVDLIENLAMELNV 54 >gi|163740517|ref|ZP_02147911.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] gi|161386375|gb|EDQ10750.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP + P + + R RK+ LT + + + G + ++S++E +T Sbjct: 1 MP-QTSATPKPAKTRSSPGPMLGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNAT 59 Query: 61 INIDNMIILAHTLDTPL 77 + + +A L+ L Sbjct: 60 PTLGTLAQIASALEVGL 76 >gi|99035914|ref|ZP_01314962.1| hypothetical protein Wendoof_01000192 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 7 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIV 66 Query: 79 KLL 81 L+ Sbjct: 67 DLI 69 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQK++ + + IS E G+ I ++ + +A TL + LL+ Sbjct: 164 GKKIKEWRIVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 223 >gi|45357772|ref|NP_987329.1| hypothetical protein MMP0209 [Methanococcus maripaludis S2] gi|45047332|emb|CAF29765.1| Conserved hypothetical protein [Methanococcus maripaludis S2] Length = 184 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + IR E L+ + TG ++ + ++E + I ++ +A+ L Sbjct: 6 HVISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTITTILKIANGLKISFTS 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|88858936|ref|ZP_01133577.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819162|gb|EAR28976.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 119 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R E L+Q+ + + + I E G +T + M LA L P+ L+ Sbjct: 8 FAYKLRKARLEKDLSQQNLADHLKISVQSIQHWERGANTPKLARMNQLAEILSVPVEYLM 67 >gi|332286204|ref|YP_004418115.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] gi|330430157|gb|AEC21491.1| transcriptional regulator, Cro/CI family protein [Pusillimonas sp. T7-7] Length = 194 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 LT + ++GF + ++S+LE GKST I ++ +A L Sbjct: 2 ARGLTLDALAEKSGFTKGYLSKLENGKSTPPIASLARIARALG 44 >gi|328947475|ref|YP_004364812.1| hypothetical protein Tresu_0574 [Treponema succinifaciens DSM 2489] gi|328447799|gb|AEB13515.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 91 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R L+Q E+ R F+QS+ + +E+G++ ++ +I +A L+T + Sbjct: 12 EKIRLARISKGLSQLEVCTRGNFSQSFYTHVESGRNQPSLMTIIRIAEVLETNPREFF 69 >gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 198 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R E +Q+ + ++ ++ IS E K+ ++ +++IL+ L +L+K Sbjct: 5 KTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKNYPDVHSLLILSDLFGVSLDELIK 63 >gi|299144948|ref|ZP_07038016.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] gi|298515439|gb|EFI39320.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] Length = 131 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + + +R E LTQ+++ + + S ++E G++ + + + +A L+ Sbjct: 6 KKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSAL 65 Query: 79 KLL 81 +L Sbjct: 66 ELF 68 >gi|294102727|ref|YP_003554585.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617707|gb|ADE57861.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 114 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + F +R ++ LTQ ++ QS+IS+ E + +ID + A P+ Sbjct: 5 ELIGQRFNELRSKSGLTQGQMAAYLDVDQSYISKCEKNERQFSIDILEKAASLFGCPVEY 64 Query: 80 LL 81 ++ Sbjct: 65 IV 66 >gi|312199652|ref|YP_004019713.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311230988|gb|ADP83843.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 501 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80 R R+ LTQ+++ ++ GF QS++S++E+G+ I +I + +A L+ + Sbjct: 24 LRAYRQAHGLTQQQLADQLGFDQSYVSKVESGRRAIHDISTLRHIARHLELAPEDV 79 >gi|262197484|ref|YP_003268693.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080831|gb|ACY16800.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 131 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQ+ G + + + +E GKS +++ +A TL+ LL Sbjct: 10 GREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTLEVSADVLL 68 >gi|255280080|ref|ZP_05344635.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269171|gb|EET62376.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + F NN +RK L+Q EI G QS + E G + + M+ L+ Sbjct: 12 PEYVEFGNNMAKLRKARGLSQAEIAAALGTLQSTYAGWEAGTRKVQLTTMLQLSKFFGVS 71 Query: 77 LWKLL 81 + L+ Sbjct: 72 IDVLI 76 >gi|224542992|ref|ZP_03683531.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM 15897] gi|224524130|gb|EEF93235.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M ++K ++ H S+ + + M+ R +RK T +++ NR +SWISE+E G++ Sbjct: 31 MKKKKIEDEHTSELLKYQGML----LRQLRKNTSYTMEDVANRFCKTKSWISEIENGRNN 86 Query: 61 INIDNMIIL 69 I+ +++ L Sbjct: 87 ISSIDLVKL 95 >gi|221209564|ref|ZP_03582545.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221170252|gb|EEE02718.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 200 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T E+ R G + ++S++E G S + ++ + L P Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 79 >gi|167567607|ref|ZP_02360523.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLF 60 >gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 210 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M RKE L+Q + G ++ +S+ ETG+S + ++I LA L + Sbjct: 1 MALGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDVQD 60 Query: 80 LLKP 83 L +P Sbjct: 61 LAEP 64 >gi|288961553|ref|YP_003451863.1| transcriptional regulator [Azospirillum sp. B510] gi|288913833|dbj|BAI75319.1| transcriptional regulator [Azospirillum sp. B510] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR++ L+Q+ + R G IS +E +S+ ++ ++ + + L + Sbjct: 5 VGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRSSPSVSSLRKVLQGIPMSLAEFF 64 >gi|262282190|ref|ZP_06059959.1| transcription regulator [Streptococcus sp. 2_1_36FAA] gi|262262644|gb|EEY81341.1| transcription regulator [Streptococcus sp. 2_1_36FAA] Length = 71 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA TLDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALF 59 >gi|85716570|ref|ZP_01047540.1| hypothetical protein NB311A_11977 [Nitrobacter sp. Nb-311A] gi|85696571|gb|EAQ34459.1| hypothetical protein NB311A_11977 [Nitrobacter sp. Nb-311A] Length = 114 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+ +T + + G + S++ LE G+ + + + A L L+K Sbjct: 4 NRIKELRESQGMTLETLAELVGLSTSYVQRLENGERNLAVKHFAAFATALRVKPEDLIK 62 >gi|114563122|ref|YP_750635.1| helix-turn-helix domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334415|gb|ABI71797.1| helix-turn-helix domain protein [Shewanella frigidimarina NCIMB 400] Length = 367 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F RK A L+ + + G + + I + E G + + N++ LA LD Sbjct: 1 MFAERLERARKAAGLSMNALASEVGLSANAIKKYEHGTTMPSSSNLLKLAKALDVRSEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|331006800|ref|ZP_08330064.1| hypothetical protein IMCC1989_737 [gamma proteobacterium IMCC1989] gi|330419391|gb|EGG93793.1| hypothetical protein IMCC1989_737 [gamma proteobacterium IMCC1989] Length = 136 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N R +R + TQ+E+ G + ISE+E + ++ L L+ Sbjct: 1 MAFKENLRRLRHDKGFTQRELAVACGLRSASISEMERDGGDPKMSTVVKLMKGLECSADA 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|312136006|ref|YP_004003344.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776057|gb|ADQ05544.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 177 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +R E T +++ G ++ E ++ + D ++ +A + + L Sbjct: 1 MFGERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|256377098|ref|YP_003100758.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921401|gb|ACU36912.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R + ++ R + S +S +E G+ + +D ++ LA LDT L +L Sbjct: 11 LVRKRVRALRLAQGWSLDDLATRAKLSPSTLSRIENGQRRLALDQLVTLAKALDTSLDQL 70 Query: 81 LK 82 ++ Sbjct: 71 VE 72 >gi|56962989|ref|YP_174716.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909228|dbj|BAD63755.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 135 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + + +R+E +Q+++ ++ + + ET K +I N++ L+ D Sbjct: 2 HSFGSKLKQLREEQGFSQEQLAKELNVSRQAVWKWETDKGLPDIQNIVRLSELFDVSTDY 61 Query: 80 LLK 82 LLK Sbjct: 62 LLK 64 >gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] Length = 202 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+E+ ++ ++ +S+ E G+S +++ +I+L+ + +LK Sbjct: 5 ERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSIPDLEKVILLSEYFEVTTDYILK 63 >gi|255038652|ref|YP_003089273.1| helix-turn-helix domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254951408|gb|ACT96108.1| helix-turn-helix domain protein [Dyadobacter fermentans DSM 18053] Length = 85 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S+ I + N R IR+ TQ+ + + G +Q+ S++E + I ++ +I +A Sbjct: 1 MSNTIEAKMRAVARNIRKIREYRDYTQEYLAMKLGISQNAYSKIELAYTRITLERLIQIA 60 Query: 71 HTLDTPLWKLL 81 LD LL Sbjct: 61 QILDVDSVDLL 71 >gi|268592470|ref|ZP_06126691.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291311872|gb|EFE52325.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 354 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R A L+ KE+ R G + + I + E +S + +I ++ L Sbjct: 1 MFGERLKRARSAAGLSMKELSLRAGVSANMIKKYEHDESMPSSGVLIKMSRALGVRNEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|224536634|ref|ZP_03677173.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] gi|224521725|gb|EEF90830.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] Length = 130 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + +R E LTQ+++ + + S ++E G++ + + + +A ++ Sbjct: 6 KKIVGQRLQLLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVMNMSAI 65 Query: 79 KLLK 82 L + Sbjct: 66 DLFR 69 >gi|187934809|ref|YP_001885121.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722962|gb|ACD24183.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] Length = 148 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +R LTQ+E+ N+ G +QS I +E K +I LA + + L Sbjct: 1 MLADKVKYLRNNLNLTQEELANKLGISQSSIGMIERNKRPAGRKMLIKLADFFNVTVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|162449406|ref|YP_001611773.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] gi|161159988|emb|CAN91293.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] Length = 371 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ L+Q + R + + +E G++T +D + LA LD + L Sbjct: 9 ANRVRERREARGLSQVALAERARLTRQSVGAIEAGRATPAVDVALRLASALDCSVEVLF 67 >gi|65321317|ref|ZP_00394276.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E ++ ++S IS LET + ++D++ +A + + L+ Sbjct: 4 FGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLM 63 >gi|308175899|ref|YP_003915305.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307743362|emb|CBT74334.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 66 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 26/53 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+ LTQ+++ + G ++ + +E G +ID ++ +A L Sbjct: 7 LGAELQRARKQNGLTQEQLADLAGISERTLRSIERGAGNPSIDAVLSVADVLG 59 >gi|172063826|ref|YP_001811477.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996343|gb|ACB67261.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 65 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ + +RKE Q+++ N G + I+ +E K + LA+ L T + KL +P Sbjct: 3 NSIKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEP 62 >gi|76809006|ref|YP_333079.1| gp68 [Burkholderia pseudomallei 1710b] gi|76578459|gb|ABA47934.1| gp68 [Burkholderia pseudomallei 1710b] Length = 155 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++ Sbjct: 93 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 149 >gi|53717350|ref|YP_105455.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|124381310|ref|YP_001024558.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126446984|ref|YP_001078890.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|254174523|ref|ZP_04881185.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254204157|ref|ZP_04910516.1| DNA-binding protein [Burkholderia mallei FMH] gi|254209136|ref|ZP_04915483.1| DNA-binding protein [Burkholderia mallei JHU] gi|254355586|ref|ZP_04971866.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52423320|gb|AAU46890.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|124289330|gb|ABM98599.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126239838|gb|ABO02950.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147745041|gb|EDK52122.1| DNA-binding protein [Burkholderia mallei FMH] gi|147750359|gb|EDK57429.1| DNA-binding protein [Burkholderia mallei JHU] gi|148023679|gb|EDK82741.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|160695569|gb|EDP85539.1| DNA-binding protein [Burkholderia mallei ATCC 10399] Length = 80 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 L ++ + R +R+ A LTQ ++ R QS++S++E G+ ++I Sbjct: 2 LPSIHHPRYVVLRTHLRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 54 >gi|21222193|ref|NP_627972.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|256786717|ref|ZP_05525148.1| regulatory protein [Streptomyces lividans TK24] gi|289770612|ref|ZP_06529990.1| regulatory protein [Streptomyces lividans TK24] gi|10432486|emb|CAC10320.1| putative regulatory protein [Streptomyces coelicolor A3(2)] gi|289700811|gb|EFD68240.1| regulatory protein [Streptomyces lividans TK24] Length = 449 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R + +R E +TQ+++ + ++IS LE G+ + + + LA L Sbjct: 6 DRNDIGRRVQRLRAERGMTQRQLAEPA-YTPAYISTLEAGRVRPSDEALRHLADRLGVGY 64 Query: 78 WKLLK 82 +L+ Sbjct: 65 EELVT 69 >gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + + +RK +TQ ++ + ++ +S ETG++ ++ + LA + Sbjct: 4 LSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDD 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|320526923|ref|ZP_08028113.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320132891|gb|EFW25431.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 144 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 F+ I+KE + EI R+G +S +SE E GK + I +I +A LD L +L+ Sbjct: 13 FKRIKKEKGINNYEIHKRSGVLESTLSEFERGKHTDLRISTLIKIADALDVTLDELV 69 >gi|308175111|ref|YP_003921816.1| transcriptional repressor RghR RapGH repressor [Bacillus amyloliquefaciens DSM 7] gi|307607975|emb|CBI44346.1| Transcriptional repressor RghR RapGH repressor [Bacillus amyloliquefaciens DSM 7] gi|328555080|gb|AEB25572.1| Transcriptional repressor RghR RapGH repressor [Bacillus amyloliquefaciens TA208] gi|328913435|gb|AEB65031.1| Transcriptional repressor RghR RapGH repressor [Bacillus amyloliquefaciens LL3] Length = 136 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 F R +R++ LT ++ +G + + IS +E GK + LA L P Sbjct: 2 ESFGKQLRTLREKRHLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLADALKIPYE 61 Query: 79 KLLK 82 +L++ Sbjct: 62 ELMQ 65 >gi|307131680|ref|YP_003883696.1| DNA-binding protein [Dickeya dadantii 3937] gi|306529209|gb|ADM99139.1| DNA-binding protein [Dickeya dadantii 3937] Length = 84 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I + R R +TQ+ + + G QS+++++E G+ +++ + +AH L Sbjct: 8 EYQIIIKTLREARIRNGMTQENLASFLGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDH 67 Query: 78 WKLLK 82 +L+ Sbjct: 68 SAVLE 72 >gi|255525754|ref|ZP_05392685.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296188039|ref|ZP_06856431.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255510577|gb|EET86886.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296047165|gb|EFG86607.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 140 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F +N+RKE L+Q+++ + + + IS +E+G+ + + + +A L+ +L Sbjct: 3 FGEFLKNLRKEKGLSQRQLADLCNISNTEISRIESGERQKPSPNILKAIAPHLEISYGEL 62 Query: 81 LK 82 + Sbjct: 63 MT 64 >gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 208 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR + +T + TG ++S +S LE G+ +++ ++ +A PL +L+ Sbjct: 29 GARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLLPIALAHQVPLDQLV 87 >gi|217966211|ref|YP_002351889.1| hypothetical protein LMHCC_2944 [Listeria monocytogenes HCC23] gi|217335481|gb|ACK41275.1| conserved domain protein [Listeria monocytogenes HCC23] gi|307572180|emb|CAR85359.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] Length = 77 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ R +A LTQKE+ G A+ I +LE G+ +I+ + ++ L++ + ++ Sbjct: 5 FKEKRNKAGLTQKELGIAVGLAEISIRKLENGERDPSINTAVKISKALNSNMEEIF 60 >gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] Length = 136 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F ++RK+ +TQ ++ + G +S+ E S +I+++ LA D + Sbjct: 3 KQSFGEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLSFPDINSIPKLAEIFDVSVD 62 Query: 79 KLLK 82 +L++ Sbjct: 63 ELMQ 66 >gi|170734382|ref|YP_001766329.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817624|gb|ACA92207.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 259 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+EAK T E+ + ++S++E + I++ +++ +A L PL L++ Sbjct: 9 GQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIE 68 >gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 243 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 54 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 113 Query: 80 LLK 82 + Sbjct: 114 FFR 116 >gi|107022224|ref|YP_620551.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689169|ref|YP_834792.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892413|gb|ABF75578.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116647258|gb|ABK07899.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 206 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + ER+ R +R T + R+G ++S IS +E ++ + LA Sbjct: 10 DDTGINERI--ARRVRELRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAA 67 Query: 72 TLDTPLWKLL 81 L L L Sbjct: 68 GLGVSLAGLF 77 >gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R ++Q+E+ R G S IS +E+ S ++ + + + L + Sbjct: 5 LGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFF 64 >gi|75761861|ref|ZP_00741789.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490644|gb|EAO53932.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + IR + ++Q+E+ + +S IS ET + + + +N +A L + LL Sbjct: 4 LGDRIKFIRTKKNISQQELADILNVNRSAISLYETNRKSPSRENTYKIATALGVSIDYLL 63 >gi|327467239|gb|EGF12743.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 71 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|326329678|ref|ZP_08195999.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325952443|gb|EGD44462.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E R IR T +++ + S +S LE+GK +++ +I L L L Sbjct: 4 ELKQVGPRIRAIRHSKGWTLEQLAAMAEMSPSTLSRLESGKRQASLELLIPLTRHLGVGL 63 Query: 78 WKLLKP 83 L+ P Sbjct: 64 DSLVTP 69 >gi|326403693|ref|YP_004283775.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050555|dbj|BAJ80893.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 469 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +R+E LTQ+++ +R G + S+++ +E + + +I L TL L Sbjct: 3 KPLIGRIVRRLRQEHGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKVDLA 62 Query: 79 KL 80 L Sbjct: 63 AL 64 >gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + +R+E LTQ+E+ ++ +S E G+ST D + LA + Sbjct: 8 EKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVS 67 Query: 77 LWKLL 81 LL Sbjct: 68 ADYLL 72 >gi|295096644|emb|CBK85734.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 75 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE +TQ ++ G QS+I+++E+G+ +++ + LA +D + +L Sbjct: 14 NALKKARKEKGITQAQLAEALGKPQSFIAKVESGERRLDVVEFVHLARLVDVNISLIL 71 >gi|229589808|ref|YP_002871927.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229361674|emb|CAY48555.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 205 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ L ++ +Q +S++E + + ++D + L L PL KL Sbjct: 21 LGLQIKRQRQAQDLKLSDVAKIADISQGMLSKIENAQVSTSLDTLSRLCDVLGLPLSKLF 80 >gi|257066078|ref|YP_003152334.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256797958|gb|ACV28613.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 304 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R IR+ +++KEI + ++ I +E G++ + +I + + L + Sbjct: 8 KFIGPDLRKIREAKGISRKEISEKVYVSEETIRRIEKGENDPRLSTLIPICNCLGIEIED 67 Query: 80 LL 81 ++ Sbjct: 68 II 69 >gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] Length = 217 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N + R+ LTQ+E+ + A+S +++ ETG S + + +A L+ + Sbjct: 1 MSLASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQPRMGAIQRIASVLNVSVSD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|163753960|ref|ZP_02161083.1| hypothetical protein KAOT1_20097 [Kordia algicida OT-1] gi|161326174|gb|EDP97500.1| hypothetical protein KAOT1_20097 [Kordia algicida OT-1] Length = 93 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + IR+ LTQ ++ +R F S +S +E+G+ + + +A LD Sbjct: 22 RHNLGVKIKEIRESKNLTQVDLASRIDGRFDTSNVSRIESGRINTTVFTLFRIAKALDVN 81 Query: 77 LWKLL 81 + LL Sbjct: 82 IADLL 86 >gi|125718672|ref|YP_001035805.1| YorfE protein [Streptococcus sanguinis SK36] gi|323350334|ref|ZP_08085999.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|125498589|gb|ABN45255.1| YorfE protein, putative [Streptococcus sanguinis SK36] gi|322123519|gb|EFX95190.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|328945063|gb|EGG39219.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 71 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 188 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|76817605|ref|YP_336411.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|76582078|gb|ABA51552.1| DNA-binding protein [Burkholderia pseudomallei 1710b] Length = 236 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 60 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 113 >gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 153 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ KLTQKE+ + A + IS E G++ +DN+ +A P KLL Sbjct: 21 NIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIEQMASIFGIPKSKLL 77 >gi|312881450|ref|ZP_07741244.1| predicted transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309370872|gb|EFP98330.1| predicted transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 207 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + IR + +T +E RTG A+S +S++E + + M LA L + Sbjct: 24 EPLKLGYRIKEIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 83 Query: 78 WKLLKP 83 +L +P Sbjct: 84 PQLFEP 89 >gi|301299974|ref|ZP_07206200.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852429|gb|EFK80087.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 119 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ I + R LT+K + +RTG ++ IS E GK+ N++ + LD P Sbjct: 2 EKRINPEKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFP 60 >gi|291037463|ref|ZP_06568427.1| hypothetical protein GxylN3_01335 [Gluconacetobacter xylinus NBRC 3288] Length = 260 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 IF + R T +I +++ + + +S +E G +++ + +A L ++ Sbjct: 154 EIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIEAGLRNPSLETVYRIAEGLSVSVYY 213 Query: 80 LL 81 L+ Sbjct: 214 LI 215 >gi|302381620|ref|YP_003817443.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192248|gb|ADK99819.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 70 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +TQ E+ +R G + I+ +E GK +++ +A PL ++ + Sbjct: 8 NQVRTLRFLSGEMTQAELGDRIGVTRQTIAAIEAGKYAPSLEAAFRIARVFGKPLEEVFQ 67 >gi|302560110|ref|ZP_07312452.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302477728|gb|EFL40821.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 285 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + Sbjct: 9 VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68 >gi|229827236|ref|ZP_04453305.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] gi|229788854|gb|EEP24968.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] Length = 371 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ N + RKE LTQ+ + G +S+ E+G + +I M+ LA + + Sbjct: 2 KLKLSENIKKYRKEMNLTQEGLAEAFGVTVGAVSKWESGSTVPDIMTMMELADFFNISMD 61 Query: 79 KLL 81 LL Sbjct: 62 ILL 64 >gi|301066017|ref|YP_003788040.1| hypothetical protein LCAZH_0946 [Lactobacillus casei str. Zhang] gi|300438424|gb|ADK18190.1| hypothetical membrane protein [Lactobacillus casei str. Zhang] Length = 202 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK +TQ+++ + + IS E KS ++ ++ L+ DT L +LL Sbjct: 3 FGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|206558960|ref|YP_002229720.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198034997|emb|CAR50869.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 260 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+EAK T E+ + ++S++E + I++ +++ +A L PL L++ Sbjct: 9 GQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIE 68 >gi|167840807|ref|ZP_02467491.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 179 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 56 >gi|206563935|ref|YP_002234698.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198039975|emb|CAR55953.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 185 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 258 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N +++R KLTQ+ + +S IS E +S+ I+ +I + P+ + Sbjct: 3 ILSKNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRSSPTIEFLIDFSKYFKIPIDII 62 Query: 81 LK 82 +K Sbjct: 63 IK 64 >gi|329962680|ref|ZP_08300603.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328529514|gb|EGF56417.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 117 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + IR+ + TQ++I G +S S E G + D + L+ + Sbjct: 6 QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSSLFGCEPFI 65 Query: 80 LLK 82 L + Sbjct: 66 LFE 68 >gi|329917226|ref|ZP_08276450.1| Transcriptional regulator, MerR family [Oxalobacteraceae bacterium IMCC9480] gi|327544593|gb|EGF30073.1| Transcriptional regulator, MerR family [Oxalobacteraceae bacterium IMCC9480] Length = 198 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RKR S R+ R A LT ++ + G ++S IS++E +T ++ Sbjct: 5 RKRVLGIASGTTTAAPATLGLRLRHARLVAGLTLLQLAQKAGCSESLISKIERSLATPSL 64 Query: 64 DNMIILAHTLDT 75 + LA LDT Sbjct: 65 TMLHRLAVALDT 76 >gi|325277349|ref|ZP_08142974.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097539|gb|EGB95760.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 184 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK LT E+ R G + ++S++E G S + ++ ++ L +KL K Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLAK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|312873901|ref|ZP_07733939.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090577|gb|EFQ48983.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 199 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 24/59 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R K TQKE G Q +S E GK+ ID +I +A L L Sbjct: 6 VSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCSVSLDWL 64 >gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 174 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK L+Q+++ N + +S+ E G S + D++I L+ L T + L Sbjct: 1 MLNENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|293603711|ref|ZP_06686130.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292817885|gb|EFF76947.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 109 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + Q+E+ + G +S + ++E G+ + ++ +A L +L+ Sbjct: 33 FGAAVRVARLTQGVAQEELAAKAGIERSHMGKIERGEHMPTLALILRIAAGLKLSAAELV 92 >gi|289644282|ref|ZP_06476368.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505894|gb|EFD26907.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 488 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80 R+ R+ LTQ+++ R GF QS++S++E+G+ I +I + +A L + Sbjct: 24 LRSYRQTFGLTQQQLAERLGFDQSYVSKVESGRRAIHDISTLRHIARRLSLSPEDV 79 >gi|239981569|ref|ZP_04704093.1| DNA-binding protein [Streptomyces albus J1074] Length = 285 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +++ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516] gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516] Length = 172 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +++RK L+Q+++ N + +S+ E G S + D++I L+ L T + L Sbjct: 1 MLNENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus gordonii str. Challis substr. CH1] gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus gordonii str. Challis substr. CH1] gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK ++Q+++ G ++ I++ E G+S ++ LA D L +L Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADYFDVSLDEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 207 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+E LTQ I + ++ IS+ E G+ NI+ + +L+ + + L+ Sbjct: 3 FAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYLI 62 >gi|59800915|ref|YP_207627.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|194098219|ref|YP_002001274.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|268594519|ref|ZP_06128686.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|59717810|gb|AAW89215.1| hypothetical protein, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|193933509|gb|ACF29333.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945] gi|268547908|gb|EEZ43326.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] Length = 145 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R + TQ E+ G Q ++S +E K ++ + LA+ L ++ Sbjct: 74 GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 131 >gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1] Length = 290 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 39/61 (63%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R +++K++ + G ++ ++++LE G++ ++++ + +LA +DTP+ +L+ Sbjct: 14 LGDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTPITELI 73 Query: 82 K 82 + Sbjct: 74 E 74 >gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62 >gi|317490340|ref|ZP_07948825.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325833363|ref|ZP_08165812.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] gi|316910554|gb|EFV32178.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325485287|gb|EGC87756.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] Length = 394 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +R+ +TQ+ + + ++ +S+ + G + +D ++ L T L Sbjct: 1 MSFADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LMR 63 >gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 285 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R+E +++ ++ G + I+ E G N D ++ +A + + L Sbjct: 3 LFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFNVTVDYL 62 Query: 81 L 81 + Sbjct: 63 I 63 >gi|291010159|ref|ZP_06568122.1| hypothetical protein SeryN2_37020 [Saccharopolyspora erythraea NRRL 2338] Length = 393 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + + +R+ AKL+Q+ +G +++ IS+ ETG+ +++ + L + D Sbjct: 321 RGVLGARLKLLRERAKLSQRGAAAVSGVSRTRISDFETGRDVPSVEKLGALLNVYDVS 378 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER+ + +R A L+Q++ +G IS E G+ + + L D Sbjct: 150 SATERISLGARLKTLRDAAGLSQRDAATLSGVDHREISHYELGERVPSEQRLGALLDAYD 209 Query: 75 TPLWK 79 P+ + Sbjct: 210 VPVAE 214 Score = 38.8 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRT---GFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +R+ A L+Q+ + G Q+ IS E+G++ +++ + L + + Sbjct: 237 LGSKLTMLREAAGLSQRAAATQMRIDGINQASISAFESGRAVPSVERLGALLNVYRVSIE 296 Query: 79 K 79 + Sbjct: 297 E 297 >gi|290959392|ref|YP_003490574.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260648918|emb|CBG72032.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 156 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + R + + +RK + L+Q ++ + G I E G + I+ +I +A Sbjct: 9 DTVDTVRSVVGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGITLPGIEQLIRIATI 68 Query: 73 LDTPLWKLL 81 + +LL Sbjct: 69 FNVAPGELL 77 >gi|253752177|ref|YP_003025318.1| DNA-binding membrane protein [Streptococcus suis SC84] gi|253754003|ref|YP_003027144.1| DNA-binding membrane protein [Streptococcus suis P1/7] gi|253755938|ref|YP_003029078.1| DNA-binding membrane protein [Streptococcus suis BM407] gi|251816466|emb|CAZ52102.1| putative DNA-binding membrane protein [Streptococcus suis SC84] gi|251818402|emb|CAZ56230.1| putative DNA-binding membrane protein [Streptococcus suis BM407] gi|251820249|emb|CAR46699.1| putative DNA-binding membrane protein [Streptococcus suis P1/7] gi|319758564|gb|ADV70506.1| putative DNA-binding membrane protein [Streptococcus suis JS14] Length = 158 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +++RK+ LTQ++ + + +S E K+ +++ +I+++ L +L+ Sbjct: 3 FGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLI 62 >gi|257792471|ref|YP_003183077.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476368|gb|ACV56688.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 395 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +R+ +TQ+ + + ++ +S+ + G + +D ++ L T L Sbjct: 1 MSFADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LMR 63 >gi|30263992|ref|NP_846369.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Ames] gi|47778251|ref|YP_022674.1| prophage lambdaba02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186831|ref|YP_030083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|165872207|ref|ZP_02216846.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167633712|ref|ZP_02392036.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|167641029|ref|ZP_02399286.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|170688718|ref|ZP_02879922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|170705922|ref|ZP_02896385.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|177654321|ref|ZP_02936250.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|254683686|ref|ZP_05147546.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254721522|ref|ZP_05183311.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A1055] gi|254736031|ref|ZP_05193737.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254743922|ref|ZP_05201605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Kruger B] gi|254754299|ref|ZP_05206334.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Vollum] gi|254758010|ref|ZP_05210037.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Australia 94] gi|30258636|gb|AAP27855.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda Ba03] gi|47551956|gb|AAT35408.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180758|gb|AAT56134.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|164712154|gb|EDR17692.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167511079|gb|EDR86468.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|167531118|gb|EDR93805.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|170129462|gb|EDS98326.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|170667234|gb|EDT17993.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|172080811|gb|EDT65892.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] Length = 114 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E ++ ++S IS LET + ++D++ +A + + L+ Sbjct: 4 FGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLM 63 >gi|332884436|gb|EGK04695.1| hypothetical protein HMPREF9456_03306 [Dysgonomonas mossii DSM 22836] Length = 97 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 ++I +E +TQK++ +R + +S+ + K I + +A+ LD + +L +P Sbjct: 5 RVKDILREKGITQKDLADRLNITEVGLSKSLSEKGNPTISTLDNIANALDVNITELFEP 63 >gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 136 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK ++Q+++ G ++ I++ E G+S ++ LA D L +L Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 182 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084121|gb|ACY20089.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 141 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R A+++ +++ R G + ++S++E G + D + +A L L Sbjct: 37 IRSQRVAAEVSLRQLAERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSAEVL 91 >gi|256393684|ref|YP_003115248.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359910|gb|ACU73407.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 215 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 A L+ E+ R ++S +S+LE+G +++ + L L P +L P Sbjct: 51 RADLSLSEVARRADLSKSTLSQLESGIGNPSLETLWALCTALGIPFGQLFDP 102 >gi|255975390|ref|ZP_05425976.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] gi|255968262|gb|EET98884.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] Length = 125 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R E KLTQ+E+ + G + + E+GK + + + LA + L Sbjct: 1 MFHVKIKELRNEKKLTQQEVADYLGITRPAYTAYESGKRQPDFETLQKLATLFNVTTDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|291297755|ref|YP_003509033.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566975|gb|ADD39940.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 115 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 PH +L R I R IR+ T ++ + + ++SELE G+ + + + Sbjct: 5 AIPHTPRPLL--RTILGGVLRGIRRHQGRTLSDVADAARVSMQYLSELERGRKEASSEIL 62 Query: 67 IILAHTLDTPLWKLL 81 + L L +L Sbjct: 63 AAVCEALRVELSDVL 77 >gi|222087277|ref|YP_002545812.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724725|gb|ACM27881.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 180 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + AI R IR + L+Q E+ ++ + I + E+GK+ ++ + +A Sbjct: 26 DTQAIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIA 85 Query: 71 HTLDTPL 77 + L+ P+ Sbjct: 86 NCLNVPI 92 >gi|148643588|ref|YP_001274101.1| HTH XRE-like family transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|148552605|gb|ABQ87733.1| predicted transcriptional regulator, HTH XRE-like family [Methanobrevibacter smithii ATCC 35061] Length = 115 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + I +R+ ++QK + +Q ++S++ GK +++ + L Sbjct: 3 VDNKIVGERMEFLRENMGVSQKNLAEYLDISQPYLSQIAAGKRPMSLTILDKLCALFGCS 62 Query: 77 LWKLL 81 LL Sbjct: 63 EQYLL 67 >gi|186473323|ref|YP_001860665.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195655|gb|ACC73619.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +A+ L Sbjct: 13 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGV 66 >gi|107023961|ref|YP_622288.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691048|ref|YP_836671.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105894150|gb|ABF77315.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116649137|gb|ABK09778.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] Length = 259 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+EAK T E+ + ++S++E + I++ +++ +A L PL L++ Sbjct: 9 GQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIE 68 >gi|313905625|ref|ZP_07838987.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469572|gb|EFR64912.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 506 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N + RKE KL+Q+E+ + TG +S +S+LE+ +I + L+ LD + Sbjct: 7 KLLANTVVSKRKEKKLSQQELADATGINRSMLSKLESRDYIPSIPQLEALSEVLDFDPSE 66 Query: 80 L 80 + Sbjct: 67 M 67 >gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 131 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R +R++ L+ ++ RTG + S++S LE G+S + + L + L Sbjct: 16 RQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSVPSFTLLSRLGNELGV 72 >gi|167565527|ref|ZP_02358443.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167572634|ref|ZP_02365508.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 80 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 L +I + R +R+ A LTQ ++ R QS++S++E G+ ++I Sbjct: 2 LPSIHHPRYVILRTHLRALRRAAGLTQTQLAERLRIDQSYLSKIERGERYVDI 54 >gi|163737555|ref|ZP_02144972.1| hypothetical protein RGBS107_18528 [Phaeobacter gallaeciensis BS107] gi|161389081|gb|EDQ13433.1| hypothetical protein RGBS107_18528 [Phaeobacter gallaeciensis BS107] Length = 51 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 27/47 (57%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+++ +S+ISE+E K + +ID + +AH LD +L Sbjct: 1 MSQEQLALAADLDRSYISEIELAKFSASIDVLERIAHALDIAPKELF 47 >gi|149201279|ref|ZP_01878254.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] gi|149145612|gb|EDM33638.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] Length = 209 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +T +++ N G + S++S++E + + + +A LD + + Sbjct: 14 LGRRIRKRRQLMSMTLQDLSNGCGVSVSYLSQIERDNAVPTLGTLAEIAAALDVSIDHFI 73 >gi|29830555|ref|NP_825189.1| DNA-binding protein [Streptomyces avermitilis MA-4680] gi|29607667|dbj|BAC71724.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680] Length = 158 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|330817706|ref|YP_004361411.1| transcriptional regulator [Burkholderia gladioli BSR3] gi|327370099|gb|AEA61455.1| transcriptional regulator [Burkholderia gladioli BSR3] Length = 183 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK+ L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|326445696|ref|ZP_08220430.1| helix-hairpin-helix DNA-binding motif-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 419 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTLDTPL 77 + R +R+ L Q+E +R G +Q+ +S LE G+ ++D + +A P Sbjct: 23 YGAVIRRVRQILGLGQREFADRCGLSQAALSRLENRGGRGGYDMDILARVATAAGLPH 80 >gi|294787640|ref|ZP_06752884.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294483933|gb|EFG31616.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 135 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 34/59 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR+E K +Q+E+ N+ G + + +++E G++ + + + LA +++L++ Sbjct: 5 EKIRKIREEKKWSQEELANKLGLSTNGYAKIERGETRLTLSRLFQLAEIFKLDIFELIQ 63 >gi|294816970|ref|ZP_06775612.1| helix-hairpin-helix DNA-binding motif-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294321785|gb|EFG03920.1| helix-hairpin-helix DNA-binding motif-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 423 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTLDTPL 77 + R +R+ L Q+E +R G +Q+ +S LE G+ ++D + +A P Sbjct: 27 YGAVIRRVRQILGLGQREFADRCGLSQAALSRLENRGGRGGYDMDILARVATAAGLPH 84 >gi|257887020|ref|ZP_05666673.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257898175|ref|ZP_05677828.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] gi|257823074|gb|EEV50006.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257836087|gb|EEV61161.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] Length = 127 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +R K+TQ+E+ ++ G + + E+GK + + LA+ D Sbjct: 4 EMFPEKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDY 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + + +RK +TQ ++ + ++ +S ETG++ ++ + LA + Sbjct: 4 LSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDD 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|218848124|ref|YP_002454675.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842] gi|218546255|gb|ACK98648.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842] Length = 60 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R TQ ++ ++G Q IS +E G +I ++ +A L L +LL Sbjct: 3 KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIASALGINLEELL 60 >gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] Length = 140 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTP 76 E M F R +R+ LTQ ++ G + IS E G+S + LA LDT Sbjct: 7 ENMSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTS 66 Query: 77 LWKLLK 82 L+ Sbjct: 67 HDYLVT 72 >gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42] gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CFN 42] Length = 189 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E LT E+ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEASPTASLLARVCAALGLSL 64 >gi|71279897|ref|YP_269962.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71145637|gb|AAZ26110.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 179 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + KLTQ ++ + ++ ++ +E+ +S +I ++ +A L + L+ Sbjct: 9 IKRLRAQHKLTQTKLADMADIPRATLANMESEQSNPSITLVVKVAQALGVSVDDLI 64 >gi|114049187|ref|YP_739737.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890629|gb|ABI44680.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 191 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2] gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2] Length = 114 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 35/61 (57%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R++ K+TQ+E+ G + IS E G+S+ +++ ++ +A+ L++ L Sbjct: 1 MLSKRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRSSPSVEVLVNIANILNSSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|318062605|ref|ZP_07981326.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actG] gi|318080566|ref|ZP_07987898.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actF] Length = 365 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R A ++Q ++ ++ ++ + +E G ++ + LA L P+ L Sbjct: 8 GERIAEARLAAGMSQGDLASKVALDRTAMVRIEAGDRRVSALELSRLAQALGVPVAHFL 66 >gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + RKE +Q+++ + ++ +S+ E G++ +I+ +I L+ + + Sbjct: 1 MIFAEKLKKERKEKGWSQEDLAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTIDE 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 190 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RKE +TQ+E + + IS ETG + +I ++ +A + + +++ Sbjct: 7 GSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGANMPDISLLVNIAEIFNVSIPEII 65 >gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] Length = 118 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R+ AKLTQ + + ++ +S+ E G S +ID ++ ++ D L KL+ Sbjct: 8 GQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGSLPDIDRLVTMSELFDISLDKLI 66 >gi|288871375|ref|ZP_06117348.2| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288863735|gb|EFC96033.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 195 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I N + +R+E KL+ +E+ + ++S ++++E G+ + + +++ + P Sbjct: 15 PMNTIVAKNIKRLREEKKLSMEELSKLSSVSKSMLAQIERGEGNPTLSTLWKISNGMKVP 74 Query: 77 LWKL-LKP 83 L ++P Sbjct: 75 FDALTVRP 82 >gi|284045487|ref|YP_003395827.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949708|gb|ADB52452.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 80 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R++ L+Q+ + + +G + I E+E I + L L+ PL + Sbjct: 11 FARTLRRQRRKQDLSQEALADASGVSAKHIGEIERENKEPGITTALRLVDGLEEPLGEFF 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|282862576|ref|ZP_06271637.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282562262|gb|EFB67803.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 477 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R ++ R +R+E + Q ++ G + S+ +++E + + ++ +A Sbjct: 7 DRKVYAYAKLRRLRREHGMNQVDMARALGISTSYANQIEQSRRPLTASVLLRIAEVFGV 65 >gi|228966939|ref|ZP_04127977.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228792673|gb|EEM40237.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E R ++S + LE + ++D + +A L + L+ Sbjct: 4 FGQNLKKFRSSRSLTQSEFGERVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63 >gi|229820721|ref|YP_002882247.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566634|gb|ACQ80485.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 281 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R ++Q E+ R G Q +S +E G+S ++ LA +L+ PL + Sbjct: 10 FARELRRWRGMRHVSQLELSLRAGTTQRHVSFIEQGRSRPGRTMVVRLAESLELPLRE 67 >gi|261339303|ref|ZP_05967161.1| hypothetical protein ENTCAN_05544 [Enterobacter cancerogenus ATCC 35316] gi|288319163|gb|EFC58101.1| transcriptional regulator, Cro/CI family [Enterobacter cancerogenus ATCC 35316] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|225568758|ref|ZP_03777783.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] gi|225162257|gb|EEG74876.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] Length = 205 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ TQ+++ + +S+ ETGK ++ + LA L L +LL Sbjct: 18 GSIIKELRERKGYTQRQLAESVCVSDKTVSKWETGKGLPDVGIITELASALGVSLAELL 76 >gi|170745213|ref|YP_001766670.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658814|gb|ACB27868.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 202 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+E L+ + + R+G ++S IS++E ++ + + LA L +L+ Sbjct: 23 AEEIRRRRREQGLSLETLAARSGVSRSMISKIERSEAVPSTVVLSRLAEALGVTFSRLMA 82 Query: 83 P 83 P Sbjct: 83 P 83 >gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ I +R E LTQ ++ G + IS +E G + ++ + +A +L + L Sbjct: 5 EKKI-GKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGSSL 63 Query: 78 WKLL 81 + Sbjct: 64 KQFF 67 >gi|126724437|ref|ZP_01740280.1| Transcriptional Regulator, XRE family protein [Rhodobacterales bacterium HTCC2150] gi|126705601|gb|EBA04691.1| Transcriptional Regulator, XRE family protein [Rhodobacterales bacterium HTCC2150] Length = 199 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++ R+ L+Q+E+ R+G QS IS++E+ + + ++ LAH LD L Sbjct: 9 AASLKSARENKGLSQRELSARSGVPQSHISKIESNAVDLRLSSLASLAHALDLEL 63 >gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 72 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ LTQ+++ G Q IS E G++ ++D I LA L + + + Sbjct: 3 LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAKPSLDVAIRLAKALGVSVEDVFE 59 >gi|15887370|ref|NP_353051.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15154869|gb|AAK85836.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 121 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R +R+ +TQKE+ G + +++S LE GK + D + +A + Sbjct: 4 FAEAVRQLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNI 58 >gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLSGIPMSLVEFF 62 >gi|329964525|ref|ZP_08301579.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328524925|gb|EGF51977.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 127 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + +R E LTQ+++ + + S ++E G++ + + + +A+ L+ Sbjct: 6 KKIVGQRLQLLRMEKNLTQEQMGEQLNLSTSAYCKIEYGETDLTLTRLNKIANILNMSAA 65 Query: 79 KLL 81 +L Sbjct: 66 ELF 68 >gi|325695196|gb|EGD37097.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 71 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|325848843|ref|ZP_08170353.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480487|gb|EGC83549.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 489 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +Q+ + + TG ++ IS +E+ +ID + +LA L + L Sbjct: 17 RKSKNFSQRNLSDLTGINRTMISRIESCNYVPSIDQLQVLAEVLGFDIVDLF 68 >gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 120 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + R + + +RK L+Q ++ G +S E G + I+ +I +A Sbjct: 2 DTVDTLRSVVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATV 61 Query: 73 LDTPLWKLL 81 + +LL Sbjct: 62 FNVAPGELL 70 >gi|293384665|ref|ZP_06630522.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389067|ref|ZP_06633541.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312908458|ref|ZP_07767414.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979359|ref|ZP_07791054.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291078027|gb|EFE15391.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291081593|gb|EFE18556.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310625570|gb|EFQ08853.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311287864|gb|EFQ66420.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 204 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LTQ+++ + +++ IS+ E+GK NI+++ ++ + +LL Sbjct: 3 FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTIDELL 62 >gi|254470871|ref|ZP_05084274.1| helix-turn-helix domain protein [Pseudovibrio sp. JE062] gi|211960013|gb|EEA95210.1| helix-turn-helix domain protein [Pseudovibrio sp. JE062] Length = 160 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E L+Q+++ + G + + +E G + + + + +A LDT L Sbjct: 3 VRKLRIEKGLSQEQLAHMAGISTRTLQRIERG-ANASPETLKCIASALDTDFGDL 56 >gi|170699072|ref|ZP_02890128.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170136030|gb|EDT04302.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|153938184|ref|YP_001392454.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934080|gb|ABS39578.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320440|gb|ADG00818.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 93 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + +R+E +LTQ+E+ ++ +S E NI+N++ L+ + L L Sbjct: 1 MFGDRLKELREEKELTQEELGKLLSVSRQTVSGYEAEVIEPNINNLVRLSDIFNVSLDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|53723158|ref|YP_112143.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134281916|ref|ZP_01768623.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254264128|ref|ZP_04954993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|52213572|emb|CAH39625.1| putative MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134246978|gb|EBA47065.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254215130|gb|EET04515.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 193 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 70 >gi|327398295|ref|YP_004339164.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180924|gb|AEA33105.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR + +T +++ ++G + ++S++E + I ++ +A L + L Sbjct: 3 VGSKIREIRTKKNMTLRDLSKKSGCSLGFLSQVERDLVSPTISSLRRIADALGINIISLF 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|317485946|ref|ZP_07944802.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922796|gb|EFV44026.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 86 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 13 DAILRERMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + + RK KL+Q+++ G +S++S +E G +I+ +I+L Sbjct: 2 KKVPYLKAALGEQLKKARKSIPKLSQEQVAIALGTERSYVSRMERGIILPSINVLILLGE 61 Query: 72 TLDTPLWKLL 81 P LL Sbjct: 62 MYGVPASTLL 71 >gi|282849936|ref|ZP_06259319.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella parvula ATCC 17745] gi|282580373|gb|EFB85773.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella parvula ATCC 17745] Length = 153 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + L+ L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|256389948|ref|YP_003111512.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356174|gb|ACU69671.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 288 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 F R R+ ++Q ++ + +G + +S +ETG++ + + ++ L Sbjct: 21 QFKKQPPTAPAEFGAMLRAWRRTRNVSQLDLSSASGVSTRHLSFMETGRAKPSREMVLRL 80 Query: 70 AHTLDTPLWK 79 A L+ PL + Sbjct: 81 ADELEVPLRE 90 >gi|260881429|ref|ZP_05404380.2| putative transcriptional regulator [Mitsuokella multacida DSM 20544] gi|260848928|gb|EEX68935.1| putative transcriptional regulator [Mitsuokella multacida DSM 20544] Length = 219 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +IRK ++ + +TG ++S ++ +E G + +I + + L L L + Sbjct: 46 NLNHIRKAKGMSLDVVAEQTGVSKSMLAAIEKGAANPSIGVLGKIMSGLRIELTDLTQ 103 >gi|167767683|ref|ZP_02439736.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] gi|167710700|gb|EDS21279.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] Length = 120 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+A TQ++I + ++IS +E + +N+ + A L+ + LL Sbjct: 19 VGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL 78 Query: 82 KP 83 +P Sbjct: 79 RP 80 >gi|256786094|ref|ZP_05524525.1| DNA-binding protein [Streptomyces lividans TK24] gi|289769990|ref|ZP_06529368.1| DNA-binding protein [Streptomyces lividans TK24] gi|9857262|dbj|BAB11923.1| chitinase promoter binding protein 1 [Streptomyces lividans] gi|289700189|gb|EFD67618.1| DNA-binding protein [Streptomyces lividans TK24] Length = 285 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + Sbjct: 9 VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68 >gi|21222829|ref|NP_628608.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|7635951|emb|CAB88448.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 295 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R R R +R+ +T +E+ R +QS IS LE G+ +I+ Sbjct: 9 RPVASSVNPTV---RRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQ 65 Query: 64 DNMIILAHTLDTP 76 + L + Sbjct: 66 RGVRDLCGVYEVE 78 >gi|86139328|ref|ZP_01057897.1| putative DNA-binding protein [Roseobacter sp. MED193] gi|85823831|gb|EAQ44037.1| putative DNA-binding protein [Roseobacter sp. MED193] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R++ + ++ +G +++ +S LE G+ + +++ L P+ +LL Sbjct: 8 LANRLATLRQDRGWSLDQLAQASGISRASLSRLEKGEVSPTAESLGQLCAAYALPMSRLL 67 >gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 20 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 79 >gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 165 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + +RK LTQ E+ + + +S+ E S +I + LA L + Sbjct: 2 ETISIGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVLGVTV 61 Query: 78 WKLLKP 83 LL P Sbjct: 62 DDLLTP 67 >gi|317122381|ref|YP_004102384.1| cupin [Thermaerobacter marianensis DSM 12885] gi|315592361|gb|ADU51657.1| Cupin 2 conserved barrel domain protein [Thermaerobacter marianensis DSM 12885] Length = 254 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 27/47 (57%) Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 T + + +G ++S++S++E G+S I + ++ +A L PL + Sbjct: 46 TLEALSRASGLSKSFLSDIERGRSDITLTSLQRIAQALGVPLAYFFR 92 >gi|300115617|ref|YP_003762191.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541559|gb|ADJ29870.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 76 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 N + +R A LTQ ++ + QS +S++E G++ ++ + + +A LD + L Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKKAHIDQSGLSKIERGENESVTLPMLRKIAKALDCSVVAL 62 Query: 81 LK 82 L+ Sbjct: 63 LE 64 >gi|257063413|ref|YP_003143085.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791066|gb|ACV21736.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 106 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDT 75 ER++ R+ LTQ+++ + + S+IS++E GK ++ ++ LA LD Sbjct: 23 ERLLSVGRAVAKARETNGLTQEQLAHMIDMSDHSFISKIENGKRIPSMQRLLTLADALDV 82 Query: 76 PL 77 + Sbjct: 83 EI 84 >gi|189462857|ref|ZP_03011642.1| hypothetical protein BACCOP_03556 [Bacteroides coprocola DSM 17136] gi|189430473|gb|EDU99457.1| hypothetical protein BACCOP_03556 [Bacteroides coprocola DSM 17136] Length = 105 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R+ LTQ+E+ G ++ IS++E+GKS I +I + Sbjct: 35 FLIGEAIKQTREAKNLTQEELGELMGVKRAQISKIESGKS-ITFSTIIRAFKAMGVNSAN 93 Query: 80 L 80 L Sbjct: 94 L 94 >gi|152969575|ref|YP_001334684.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580692|ref|YP_002239362.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238894056|ref|YP_002918790.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae NTUH-K2044] gi|262043620|ref|ZP_06016729.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936213|ref|YP_003440272.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290510732|ref|ZP_06550102.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|330010156|ref|ZP_08306698.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] gi|150954424|gb|ABR76454.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569750|gb|ACI11526.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238546372|dbj|BAH62723.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038958|gb|EEW40120.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288890922|gb|ADC59240.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289777448|gb|EFD85446.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|328534622|gb|EGF61198.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|111657106|ref|ZP_01407894.1| hypothetical protein SpneT_02001666 [Streptococcus pneumoniae TIGR4] gi|116517019|ref|YP_816720.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|148985331|ref|ZP_01818554.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|148989546|ref|ZP_01820905.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|148990563|ref|ZP_01821689.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|148993017|ref|ZP_01822611.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|148997524|ref|ZP_01825129.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|149002814|ref|ZP_01827740.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|149011664|ref|ZP_01832860.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|168486119|ref|ZP_02710627.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168489588|ref|ZP_02713787.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168491326|ref|ZP_02715469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168493326|ref|ZP_02717469.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|168575882|ref|ZP_02721797.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169834092|ref|YP_001694857.1| hypothetical protein SPH_1553 [Streptococcus pneumoniae Hungary19A-6] gi|194398183|ref|YP_002038070.1| hypothetical protein SPG_1363 [Streptococcus pneumoniae G54] gi|221232161|ref|YP_002511314.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854869|ref|YP_002736381.1| hypothetical protein SPJ_1321 [Streptococcus pneumoniae JJA] gi|225857057|ref|YP_002738568.1| hypothetical protein SPP_1441 [Streptococcus pneumoniae P1031] gi|225860797|ref|YP_002742306.1| hypothetical protein SPT_0851 [Streptococcus pneumoniae Taiwan19F-14] gi|237650477|ref|ZP_04524729.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974] gi|237821792|ref|ZP_04597637.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974M2] gi|298229247|ref|ZP_06962928.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255692|ref|ZP_06979278.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254577|ref|ZP_07340681.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|303259019|ref|ZP_07344998.1| hypothetical protein CGSSp9vBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|303261703|ref|ZP_07347650.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|303264372|ref|ZP_07350292.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|303265829|ref|ZP_07351726.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|303268162|ref|ZP_07353961.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|307068076|ref|YP_003877042.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|116077595|gb|ABJ55315.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|147756579|gb|EDK63620.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|147759108|gb|EDK66102.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|147764095|gb|EDK71027.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|147922529|gb|EDK73648.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|147924201|gb|EDK75301.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|147925089|gb|EDK76170.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|147928218|gb|EDK79235.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|168996594|gb|ACA37206.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|183570815|gb|EDT91343.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183571900|gb|EDT92428.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183574439|gb|EDT94967.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183576644|gb|EDT97172.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|183578217|gb|EDT98745.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357850|gb|ACF56298.1| conserved domain protein [Streptococcus pneumoniae G54] gi|220674622|emb|CAR69186.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723584|gb|ACO19437.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225724319|gb|ACO20171.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|225727030|gb|ACO22881.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|301794461|emb|CBW36896.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301800287|emb|CBW32907.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301802162|emb|CBW34900.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598545|gb|EFL65587.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|302637283|gb|EFL67771.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|302639962|gb|EFL70418.1| hypothetical protein CGSSpBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|302642241|gb|EFL72589.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|302644564|gb|EFL74814.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|302646184|gb|EFL76411.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|306409613|gb|ADM85040.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|327389609|gb|EGE87954.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332073729|gb|EGI84208.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332075003|gb|EGI85475.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332200864|gb|EGJ14936.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] gi|332203252|gb|EGJ17320.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 69 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|33596283|ref|NP_883926.1| putative transcriptional regulatory protein [Bordetella parapertussis 12822] gi|33602055|ref|NP_889615.1| putative transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|33566052|emb|CAE36950.1| putative transcriptional regulatory protein [Bordetella parapertussis] gi|33576493|emb|CAE33571.1| putative transcriptional regulatory protein [Bordetella bronchiseptica RB50] Length = 206 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P P + + R +RK K T + + G + ++S LE G+ + Sbjct: 12 PPMTAKSPPIPAPSPEQ---IGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSA 68 Query: 62 NIDNMIILAHTLDTPLWKLL 81 ++ + +A L + L LL Sbjct: 69 SVGTLHTVAGALGSSLSALL 88 >gi|14324400|dbj|BAB59328.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 196 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +RK ++QK++ TG +QS+I+ LE G + + L K Sbjct: 12 LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEK 65 >gi|85707344|ref|ZP_01038427.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668152|gb|EAQ23030.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 211 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +++R+ T + RTG A S I ++E G+ + + +N+I +A D + Sbjct: 24 RADLGARMKSVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDIGME 83 Query: 79 KLL 81 +L Sbjct: 84 RLF 86 >gi|119775778|ref|YP_928518.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119768278|gb|ABM00849.1| putative transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + + L + Sbjct: 4 GASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVEFF 62 >gi|332877082|ref|ZP_08444833.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684972|gb|EGJ57818.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 142 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RN R +LTQ+E+ R G ++ IS++E+GK + I + + L +LK Sbjct: 9 GSIIRNERIRKRLTQEELGERVGVGKAQISKIESGK-GLTIKTVTKVLDALGISASVVLK 67 >gi|296269081|ref|YP_003651713.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091868|gb|ADG87820.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 122 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R +R T +E+ + ++SE+E G+ + + + + L PL Sbjct: 5 RHLLGDVLRRLRVRQNRTLREVSTLARVSLGYLSEVERGQKEASSELLAAICAALGVPLS 64 Query: 79 KLLK 82 ++L+ Sbjct: 65 QVLR 68 >gi|294629979|ref|ZP_06708539.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] gi|292833312|gb|EFF91661.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] Length = 101 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R+ R +TQ + R G Q+ +S LE G ST I + LA LD+ L Sbjct: 26 LFGKAVRDRRTALGMTQSRLAARAGMTQAAVSRLEHGGSTPTIPLLERLAAALDSTLHLD 85 Query: 81 LKP 83 + P Sbjct: 86 IAP 88 >gi|291485900|dbj|BAI86975.1| hypothetical protein BSNT_05104 [Bacillus subtilis subsp. natto BEST195] Length = 139 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F R +R+ KLT ++ +G + + IS++E GK T + LA L P L Sbjct: 4 FGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|238798761|ref|ZP_04642232.1| hypothetical protein ymoll0001_6250 [Yersinia mollaretii ATCC 43969] gi|238717393|gb|EEQ09238.1| hypothetical protein ymoll0001_6250 [Yersinia mollaretii ATCC 43969] Length = 75 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R +TQ+ + G QS+I+++E G+ +++ + +A L L +L+ Sbjct: 16 LRKQRIAKGITQESLATALGRPQSFIAKVENGERRLDVVEFVHIARLLGVRLEDVLE 72 >gi|257064295|ref|YP_003143967.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791948|gb|ACV22618.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 196 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R A L+Q+ + + ++ +S ETGK+ ++ +++++++ + L+ Sbjct: 3 VGNRIREERDRANLSQEGLAEKIFVSRQTVSNWETGKTYPDVQSLLLMSNLFGVSIDSLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 141 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R++RK+ LTQ+E+ ++ G +S +++ E G+ + I + +A L+ +L Sbjct: 3 LGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPGEL 62 Query: 81 L 81 + Sbjct: 63 M 63 >gi|168483951|ref|ZP_02708903.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|172042755|gb|EDT50801.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|332201874|gb|EGJ15944.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 69 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62 >gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] Length = 171 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 H + ++ ++ +R+E +TQ E+ R G +S E G +I M+ Sbjct: 8 KHKKEGMILDQKKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNYMPDIATMLS 67 Query: 69 LAHTLDTPLWKLL 81 L + + +LL Sbjct: 68 LCEEFEISINELL 80 >gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + +R+E LTQ+E+ ++ +S E G+ST D + LA + Sbjct: 5 EKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVS 64 Query: 77 LWKLL 81 LL Sbjct: 65 ADYLL 69 >gi|160897745|ref|YP_001563327.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363329|gb|ABX34942.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 131 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F R++R E ++Q+ + N +S + ++E G+ + + +A L Sbjct: 53 FGAAVRSLRNERGISQESLANLADIERSHMGKVERGEHMPTLVIVFKIARGLG 105 >gi|160878327|ref|YP_001557295.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426993|gb|ABX40556.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 141 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +RK + TQ+ + + + S ETG++ D + LA P+ Sbjct: 4 ELIAKRLKELRKSFEYTQEFVASYLNIGRQAYSHYETGRNAPTTDTLYKLASLYHIPVND 63 Query: 80 LLK 82 LLK Sbjct: 64 LLK 66 >gi|16081273|ref|NP_393584.1| hypothetical protein Ta0106 [Thermoplasma acidophilum DSM 1728] gi|10639252|emb|CAC11254.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 194 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +RK ++QK++ TG +QS+I+ LE G + + L K Sbjct: 8 EELRKMRKNLGISQKDLAKVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEK 63 >gi|328886831|emb|CCA60070.1| transcription regulator [Streptomyces venezuelae ATCC 10712] Length = 202 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + L+ E+ +R + ++S+LE G +++++ ++ + L + +L Sbjct: 24 GARLRKFRLDRGLSLTEVAHRAEVTKGFLSQLERGLTSVSVPTLLRVCEVLRIGVGELF 82 >gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 136 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK ++Q+++ G ++ I++ E G+S ++ LA D L +L Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|313898507|ref|ZP_07832044.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956889|gb|EFR38520.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 71 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+E+ + G + I +E G+ I I + L L L Sbjct: 5 KIKMARMELNMSQEELAGKVGATRQTIGLIEAGRYNPTIKLCIKICIALHKHLDDLF 61 >gi|312277953|gb|ADQ62610.1| transcriptional regulator, XRE family [Streptococcus thermophilus ND03] Length = 65 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQ ++ G + I +E GK ++ I + TLD L +L Sbjct: 6 RLKAARAEHDMTQGDLAEAIGATRQTIGLIEAGKYNPSLALCIAICKTLDRTLDQLF 62 >gi|298346546|ref|YP_003719233.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|298236607|gb|ADI67739.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 43063] Length = 174 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R P + R R +R+ LT +++ + + ++SE+E G+ + + Sbjct: 66 RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 125 Query: 66 MIILAHTLDTP 76 + + + L+ P Sbjct: 126 LASICYALEAP 136 >gi|197337667|ref|YP_002157850.1| transcriptional regulator, MerR family [Vibrio fischeri MJ11] gi|197314919|gb|ACH64368.1| transcriptional regulator, MerR family [Vibrio fischeri MJ11] Length = 500 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +I+R+ RN+RK LT +++ R + S++S +E GK + D Sbjct: 4 SKSIIRQSHFLGTKIRNLRKRNHLTMEDLSTRCIRVDPENSPSVSYLSMIERGKRVPSAD 63 Query: 65 NMIILAHTLDTP 76 + ++A Sbjct: 64 MLEVIATVFQKE 75 >gi|161520269|ref|YP_001583696.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344319|gb|ABX17404.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 200 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T E+ R G + ++S++E G S + ++ + L P Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 79 >gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 298 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + RK+ ++Q ++ R + + + E G+S +I + L+ LD L Sbjct: 5 KIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDVDL 62 >gi|325971877|ref|YP_004248068.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027115|gb|ADY13874.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 197 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R LTQ+++ + ++ IS+ ETG+ N+ ++ LA + + Sbjct: 1 MQFHEKLKAYRSSYGLTQEQLGEKVFVSRVTISKWETGRGLPNLGSLQQLASLFGISVDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|300703288|ref|YP_003744890.1| hypothetical protein RCFBP_10960 [Ralstonia solanacearum CFBP2957] gi|299070951|emb|CBJ42259.1| protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 98 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RK+A L+Q E+ R QS I + E G+ +++ + + L +L++ Sbjct: 17 LREARKKAGLSQVELAKRLELTQSIIGKCERGERRLDVIELREWCGAIGLTLSELVR 73 >gi|295838009|ref|ZP_06824942.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] gi|295826798|gb|EFG65058.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74] Length = 120 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + LA L L Sbjct: 9 LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67 >gi|295105756|emb|CBL03299.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 154 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ LTQ E+ R + +S E G + ID + ++A P+ KLL Sbjct: 9 EIRERNGLTQAEMAERLFVTRQAVSRWECGDTQPGIDALKLIAAEFHVPIEKLL 62 >gi|259047642|ref|ZP_05738043.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035833|gb|EEW37088.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 70 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK +TQ+E+ N ++ + LE G+ +I +A + + ++ Sbjct: 3 NRLEEIRKAKGITQEELANALEVSRQTVGSLENGRYNPSIILAFKIARFFEVSIEEVF 60 >gi|239930643|ref|ZP_04687596.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291439007|ref|ZP_06578397.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291341902|gb|EFE68858.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 285 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + Sbjct: 9 VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68 >gi|160933447|ref|ZP_02080835.1| hypothetical protein CLOLEP_02293 [Clostridium leptum DSM 753] gi|156867324|gb|EDO60696.1| hypothetical protein CLOLEP_02293 [Clostridium leptum DSM 753] Length = 119 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N+ R +R+ ++Q+E+ R G A S IS E +D + +A + L L+ Sbjct: 4 FGNHLRMLRERYGISQEELGRRVGRAGSVISNYENNIKIPTLDVLTTMARIYNVSLDYLV 63 >gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62 >gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533] gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533] Length = 341 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%) Query: 13 DAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 +I ER I +RK+ L+Q+ + + ++ +S+ E+ +S +I+ ++ L Sbjct: 7 KSINNERTIHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSL 66 Query: 70 AHTLDTPLWKLLK 82 + LLK Sbjct: 67 SELFGVTTDYLLK 79 >gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62 >gi|134294052|ref|YP_001117788.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137209|gb|ABO58323.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|322390694|ref|ZP_08064207.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142600|gb|EFX38065.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 151 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +RK KLTQ ++ Q S E G N++ ++ LA DT LL Sbjct: 8 FGDRLRELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPNLEAVVKLAKLFDTTTDYLL 67 >gi|296127941|ref|YP_003635191.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019756|gb|ADG72992.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 488 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + ++ R++R +T ++ G A S +S LE G + + +A L Sbjct: 14 VDTLVLGRRVRHLRTARGMTLDDLGRAIGRAPSQVSMLENGHREPKLSLLAQVAEALGVE 73 Query: 77 LWKLL 81 L LL Sbjct: 74 LGDLL 78 >gi|258626503|ref|ZP_05721343.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258581214|gb|EEW06123.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] Length = 180 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + +RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKTLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family [Rhizobium etli 8C-3] Length = 219 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] Length = 258 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +RKE L+Q+ + + G + IS+ E + + ++ L++ + Sbjct: 1 MSLGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQGFPETEKLLRLSNIFEVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|321156891|emb|CBW38880.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] Length = 420 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QQLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLFEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E LTQ+++ + G +S+ E G +I+ + L+ L TP+ LL Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETLL 65 >gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 147 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R +R E +TQ E+ N G ++ ++ E + ++ LA L + L Sbjct: 2 NRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQREPKLETWQKLADYLGVSVPYL 58 >gi|308071686|ref|YP_003858295.1| hypothetical protein pCB42_p1 [Leuconostoc citreum] gi|295913739|dbj|BAJ07252.1| hypothetical protein [Leuconostoc citreum] Length = 163 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK+ LTQ+E+ +++ + LE G+ +++ ++ +A+ L P+ L Sbjct: 5 NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGE-DVSLSSLSAIANALSVPISGLF 60 >gi|291550352|emb|CBL26614.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 119 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + RK +++ ++ ++ A +I+ +E ++ + L LD + + Sbjct: 11 KAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQ 70 Query: 80 LLKP 83 P Sbjct: 71 FFFP 74 >gi|283834367|ref|ZP_06354108.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291069908|gb|EFE08017.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|261492432|ref|ZP_05988988.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496386|ref|ZP_05992780.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307971|gb|EEY09280.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311891|gb|EEY13038.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 132 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 NN R L+Q+E+ +TG +QS IS+ E + LA +L Sbjct: 74 NNLGAWRIYRNLSQQEVAEKTGLSQSAISQAERKGNRPQKRTREKLAKIYGCTPEQL 130 >gi|300779705|ref|ZP_07089561.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030] gi|300533815|gb|EFK54874.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030] Length = 135 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78 +++R ++Q+ + + +G ++S +S LE + N+ + LA+ L P Sbjct: 32 RLKSVRTMRGVSQQRLADLSGLSRSQVSNLERNHNNSRRSNDPNLSTIYRLAYALRVPPV 91 Query: 79 KLL 81 LL Sbjct: 92 LLL 94 >gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78] gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF] gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78] Length = 219 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE +T + TG + S +S LE+G ++ ++ LA L +L+ Sbjct: 36 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 95 >gi|302528751|ref|ZP_07281093.1| predicted protein [Streptomyces sp. AA4] gi|302437646|gb|EFL09462.1| predicted protein [Streptomyces sp. AA4] Length = 403 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+ A LTQ + G ++ + +E G +++ ++ LA+ + LL Sbjct: 16 LASRIRGAREAANLTQAQAAAELGVSRPTLIAMEKGTRSVSPPELVKLANAYGRDVATLL 75 Query: 82 KP 83 +P Sbjct: 76 RP 77 >gi|227513209|ref|ZP_03943258.1| hypothetical protein HMPREF0497_2331 [Lactobacillus buchneri ATCC 11577] gi|227083590|gb|EEI18902.1| hypothetical protein HMPREF0497_2331 [Lactobacillus buchneri ATCC 11577] Length = 68 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R++R +++Q E+ Q+ IS +E + +D + A L L Sbjct: 1 MIGTHIRDLRSARQMSQDELGKLVNIDQTLISRVERNHRKVTVDELPKFAKALGVSTEDL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|237730277|ref|ZP_04560758.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] gi|226905816|gb|EEH91734.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|225018752|ref|ZP_03707944.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum DSM 5476] gi|224948480|gb|EEG29689.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum DSM 5476] Length = 97 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F R +R KLTQ ++ R +++ IS E T ++D + L+ Sbjct: 5 FGCRLRELRLNKKLTQTQVARRLNLSKTTISGYENNIKTPSLDVLTQLSILYGVS 59 >gi|183981984|ref|YP_001850275.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183175310|gb|ACC40420.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 108 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + L PL Sbjct: 6 REVIGDVLRGERTSQGRTLREVSDTARVSLGYLSEIERGRKEPSSELLNAICDALQVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 EVL 68 >gi|168211093|ref|ZP_02636718.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168216129|ref|ZP_02641754.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|170710849|gb|EDT23031.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|182381582|gb|EDT79061.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 65 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R A ++Q E+ + G A+ I+ +E K ++D I +A L T L L Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59 >gi|167747596|ref|ZP_02419723.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662] gi|239625078|ref|ZP_04668109.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652958|gb|EDR97087.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662] gi|239521464|gb|EEQ61330.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 113 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RKE KL+ +E+ R +I +LE G ++ + I+ L T L Sbjct: 11 FGAKLRGKRKECKLSYQELAERCHVNHGYIRQLEAGNKLPSVSLLFIICDVLGTSPNYLF 70 >gi|153811409|ref|ZP_01964077.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] gi|149832536|gb|EDM87620.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] Length = 121 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + RK +++ ++ ++ A +I+ +E ++ + L LD + + Sbjct: 13 KAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQ 72 Query: 80 LLKP 83 P Sbjct: 73 FFFP 76 >gi|330996840|ref|ZP_08320709.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] gi|329572283|gb|EGG53942.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] Length = 117 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + IR+ + TQ++I G +S S E G + D + +++ + Sbjct: 6 QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERISNMFGCEPFI 65 Query: 80 LLK 82 L + Sbjct: 66 LFE 68 >gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62 >gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 71 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R +RK+A+L+Q+ + ++ G ++ IS ETG S I+++N +A + Sbjct: 2 RKQTQNRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTID 61 Query: 79 KLL 81 LL Sbjct: 62 YLL 64 >gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + E+ + A+S++S +E +S +I + +A L+ + LL Sbjct: 6 GERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQSNPSISFIEKIADALNVSINLLL 65 >gi|297200537|ref|ZP_06917934.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197709662|gb|EDY53696.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 279 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P D R + R+ R++A L+Q+E+ R + S++ +LE G + D Sbjct: 4 PKDLDPSSSPRALLGAELRHAREKAGLSQEELGQRLFVSGSFVGQLEAGTRRMQADVARQ 63 Query: 69 LAHTLDTP 76 L L T Sbjct: 64 LDEVLGTE 71 >gi|182624949|ref|ZP_02952728.1| transcriptional Regulator, XRE family with Cupin sensor domain [Clostridium perfringens D str. JGS1721] gi|177909955|gb|EDT72365.1| transcriptional Regulator, XRE family with Cupin sensor domain [Clostridium perfringens D str. JGS1721] Length = 66 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79 + +N R IR E + +E+ +G + I +E+GK I +++ LA +LD + K Sbjct: 1 MLGDNLRKIRTEKNIGIRELARISGVSHIIIMNIESGKSRNPTITSIMKLAKSLDITIDK 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62 >gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter sulfurreducens KN400] Length = 142 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +R E LTQK++ G ++I ++E G+ ++ +I ++ L P Sbjct: 6 GHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGEQLPSLKILIGISEALGVP 61 >gi|31795118|ref|NP_857976.1| conjugal transfer protein TrbA [uncultured bacterium] gi|32455873|ref|NP_862526.1| TrbA protein [Pseudomonas sp. ADP] gi|49176918|ref|YP_025421.1| regulatory protein for mating pair formation [Ralstonia eutropha JMP134] gi|72384303|ref|YP_293656.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|13937509|gb|AAK50320.1|U66917_89 TrbA protein [Pseudomonas sp. ADP] gi|31746362|emb|CAD97487.1| TrbA protein [uncultured bacterium] gi|39777498|gb|AAR31073.1| regulatory protein for mating pair formation [Ralstonia eutropha JMP134] gi|72123656|gb|AAZ65799.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 120 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|329941426|ref|ZP_08290705.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329299957|gb|EGG43856.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 278 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP P D R + R+ R++A L+Q+E+ R + S+I +LE G Sbjct: 1 MPG-----PKDLDPSSSPRALLGAELRHAREKAGLSQEELGGRLFVSGSYIGQLEAGTRR 55 Query: 61 INIDNMIILAHTLDTPLW 78 + + +L L + Sbjct: 56 MQPEYARMLDEVLGVDFF 73 >gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains [Synergistetes bacterium SGP1] Length = 140 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+ + Q+E+ + G Q+ IS +E+ ++ D ++ +A L + +LL Sbjct: 5 GANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDVRELL 63 >gi|288353334|ref|YP_003422632.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] gi|285026735|gb|ADC33829.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] Length = 401 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + ++ RK +L+Q+E+ G ++ IS+ E G + ++ + L P+ Sbjct: 21 RFLIPERLKDARKFMRLSQEELGKEIGVSRQAISQFERGDRNPDARTLVGIQSVLKQPI 79 >gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 291 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 35/63 (55%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N + +RK +TQ+++ + ++ +S+ E+G+S ++ ++I+ + Sbjct: 1 MSFSDNLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQSYPEMEKLLIICDMFHCDMDS 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|322420931|ref|YP_004200154.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320127318|gb|ADW14878.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 118 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +TQ+++ TG Q ISELE GK + D LA L +++L Sbjct: 59 GMALRGARYREGMTQRQLAALTGIPQRHISELENGKRQMGRDWARKLAEALRVSDYRVL 117 >gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 171 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IRKE ++QK++ + S S E N + +A L + LL Sbjct: 9 VGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNNREPNALTLKKIADVLSVDVHDLL 68 >gi|37527292|ref|NP_930636.1| hypothetical protein plu3418 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786726|emb|CAE15792.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 82 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I + R R +TQ+ + QS+I+++E G+ +++ + +AH L Sbjct: 8 EYQIVIKALREARIAKGVTQENLAQALDRPQSFIAKVENGERRLDVVEFVHIAHLLSLEP 67 Query: 78 WKLLK 82 L+K Sbjct: 68 SVLIK 72 >gi|330809886|ref|YP_004354348.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377994|gb|AEA69344.1| putative Transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 200 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK K+T E+ R+G ++ + E+E + +I + +A L + ++ Sbjct: 22 VARTLKQARKAKKITLDELSRRSGVSKGMVVEIEKCTANPSIGILCKIAAALGLSVADIV 81 >gi|325954495|ref|YP_004238155.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] gi|323437113|gb|ADX67577.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] Length = 113 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R R+ L+Q+++ G + I E + +ID + LA L T Sbjct: 4 FGKRLREAREAKNLSQQDLAKLIGSVHTVIGRYERDEMKPSIDVVKRLADELGT 57 >gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] Length = 375 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK +LTQ+E+ + ++ IS E+ + ++ ++ILA+ + + + Sbjct: 1 MTLGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNEPDVKTLLILANIFEITVDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|319954799|ref|YP_004166066.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237] gi|319423459|gb|ADV50568.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237] Length = 103 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 RN R+E LTQ+++ +++IS +E S + + + + Sbjct: 45 LRNAREEKNLTQEQLGELVDKKRTYISRVENNGSNLTLKTLYEIVE 90 >gi|311279020|ref|YP_003941251.1| Cupin 2 conserved barrel domain-containing protein [Enterobacter cloacae SCF1] gi|308748215|gb|ADO47967.1| Cupin 2 conserved barrel domain protein [Enterobacter cloacae SCF1] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4] gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4] Length = 194 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + IR LT ++ + +G +++ IS +E +++ + L L L Sbjct: 13 AARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEASPTATLLARLCSALGQSL 67 >gi|126011121|ref|YP_001039946.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] gi|124389390|gb|ABN10832.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] Length = 86 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ RK AKL Q ++ Q I +E GK + +++ L + + Sbjct: 22 EFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDD 81 Query: 80 LL 81 L Sbjct: 82 FL 83 >gi|83717916|ref|YP_440408.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83651741|gb|ABC35805.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 236 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 60 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 113 >gi|81427830|ref|YP_394829.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609471|emb|CAI54517.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ K++ +++ +G + I+++E GKS I+ + L L+ PL L K Sbjct: 12 GEQIKQLRQSKKISVEKLSELSGLSSLTITKIENGKSNPTINTLWKLTKCLEAPLMSLFK 71 >gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 296 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + RKE K++Q+E+ + +S+ E S + + +I LA L + +L Sbjct: 1 MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] Length = 296 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + RKE K++Q+E+ + +S+ E S + + +I LA L + +L Sbjct: 1 MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|322436278|ref|YP_004218490.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164005|gb|ADW69710.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 70 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R Q ++ +G + +S LE GK + + + + LD+ L ++L Sbjct: 8 LGQRIRDLRIARGWRQIDLAEHSGVHEVHLSLLERGKHEVGVQRLKDIVTALDSSLSEIL 67 Query: 82 K 82 K Sbjct: 68 K 68 >gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 420 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + NN +RK+ +TQ+++ N G + +S+ E G++ +I ++ +LA T + ++ Sbjct: 7 VMGNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQTCPDIIHIPLLADVFGTTIDEI 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|304389736|ref|ZP_07371695.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326912|gb|EFL94151.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 174 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R P + R R +R+ LT +++ + + ++SE+E G+ + + Sbjct: 66 RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 125 Query: 66 MIILAHTLDTP 76 + + + L+ P Sbjct: 126 LASICYALEAP 136 >gi|302525598|ref|ZP_07277940.1| hypothetical protein SSMG_01980 [Streptomyces sp. AA4] gi|302434493|gb|EFL06309.1| hypothetical protein SSMG_01980 [Streptomyces sp. AA4] Length = 930 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F +R+ A LTQ+++ R G + + LE G+ + +LA L P Sbjct: 7 ETFDRTLVRLRRAAGLTQEQLAQRCGLSTRGVGNLERGQRHPRRVTVQLLADGLALP 63 >gi|300811797|ref|ZP_07092268.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497213|gb|EFK32264.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 136 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R++RK+ L+QKE+ + Q+ ++ E G S NI + LA D Sbjct: 1 MMLPSKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|295106952|emb|CBL04495.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 75 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF--AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R L+Q+ + G + ++I+ +E GK I ++ + +A L + Sbjct: 12 LGKSIREERLAQGLSQRTLAGMIGQPNSHTYITRVEQGKIKIGLEQLGRIADALGVEVRD 71 Query: 80 LL 81 L+ Sbjct: 72 LI 73 >gi|260887976|ref|ZP_05899239.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838541|ref|YP_004413121.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260862227|gb|EEX76727.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329746305|gb|AEB99661.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 90 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R E LTQKE+ ++G QS IS +E G++ ++ + +A L Sbjct: 37 ARMEQDLTQKELAEKSGVRQSNISRIEKGQAVPSLVTLDKIAKALGKE 84 >gi|271966468|ref|YP_003340664.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509643|gb|ACZ87921.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LT +++ + S +S +E G+ + + +A L L +L+ Sbjct: 7 LGLRVQELRHLRGLTLQQMAGAADVSVSMLSSVERGQKAPTVVVLGRIADGLGVSLAELV 66 >gi|229065719|ref|ZP_04200943.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228715537|gb|EEL67338.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 186 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 8 VGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67 >gi|269124690|ref|YP_003298060.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309648|gb|ACY96022.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 282 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S + R R +RK+ LTQ+ + G+ +S +S++E G+ T + D++ + Sbjct: 1 MSTPSQQAREALGLRLRELRKDGGLTQRRLAELAGWVESKVSKIEHGRQTPSEDDIRLWC 60 Query: 71 HTLDTP 76 + Sbjct: 61 RLVGAE 66 >gi|209549722|ref|YP_002281639.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535478|gb|ACI55413.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 264 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R R+ +++Q ++ +Q +S +E+G++T + D ++ LA L PL Sbjct: 8 LGDHLREWRQRRRMSQLDLALEADISQRHLSFIESGRATPSRDMLLHLAERLGVPLRD 65 >gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 191 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|91782210|ref|YP_557416.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686164|gb|ABE29364.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 98 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 R+ R RK ++Q + +++++S LE GK T +D + +A + PL Sbjct: 4 RLGLARGLRAARKMRGISQDGLGVS---SRTYLSALELGKQTPTLDKLDEIARAIGVHPL 60 Query: 78 WKLL 81 L Sbjct: 61 SVLF 64 >gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|68697729|emb|CAJ14057.1| hypothetical protein [Streptomyces viridochromogenes] Length = 192 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R LT +++ +R + S +S +E G+ + + + L LL Sbjct: 7 LGSRIQELRLSQSLTLQDLADRAAVSVSMLSSVERGRKAPTVVVLARIPEGLGVTAAHLL 66 Query: 82 K 82 Sbjct: 67 T 67 >gi|89097350|ref|ZP_01170240.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088173|gb|EAR67284.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 107 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +R+E K++ E+ + G A+S++S LE ++ +I + ++ L P+ Sbjct: 1 MIGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKISAVLHVPVDT 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 188 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|333031238|ref|ZP_08459299.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] gi|332741835|gb|EGJ72317.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011] Length = 165 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER+ R +RKE + K + + +S +E G+ ++ ID + +A L Sbjct: 95 ERVKIGAKIRELRKEKNIEAKALAQIANIDAANLSRIEQGRYSVGIDILSKIALALG 151 >gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 188 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q E+ + + +S+ E G S + + +I ++ L+TP+ L Sbjct: 20 MLSENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPVSTL 79 Query: 81 L 81 L Sbjct: 80 L 80 >gi|255325181|ref|ZP_05366287.1| helix-turn-helix domain protein [Corynebacterium tuberculostearicum SK141] gi|255297746|gb|EET77057.1| helix-turn-helix domain protein [Corynebacterium tuberculostearicum SK141] Length = 143 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R + +T +E+ + ++SELE G+ ++ + + + H LD + Sbjct: 55 REALGLTLRAFRADKGVTLRELAGVARVSPGYLSELERGRKEVSSELLASVCHALDCSVS 114 Query: 79 KLL 81 +L Sbjct: 115 DVL 117 >gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] Length = 118 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 10 HLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 L E + R+ R++ K++Q E+ G Q+ I +ET +S + ++ + Sbjct: 2 VLPQVSKSENLQEVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMKLEKLFR 61 Query: 69 LAHTLDTPLWKLL 81 +A LD KLL Sbjct: 62 IAEVLDVTPNKLL 74 >gi|160221335|gb|ABX11276.1| XRE-like transcriptional regulator [Burkholderia sp. MBA4] Length = 189 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +A+ L Sbjct: 13 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGV 66 >gi|170759140|ref|YP_001786285.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169406129|gb|ACA54540.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE + Q+E+ + ++ IS LE G+ +I +A + + + Sbjct: 3 NKLEEIRKERGINQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60 >gi|148985572|ref|ZP_01818761.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|147922292|gb|EDK73413.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|301800751|emb|CBW33399.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] Length = 299 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + G +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|59713441|ref|YP_206216.1| MerR family transcriptional regulator [Vibrio fischeri ES114] gi|59481689|gb|AAW87328.1| transcriptional regulator, MerR family [Vibrio fischeri ES114] Length = 500 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +I+R+ RN+RK LT +++ R + S++S +E GK + D Sbjct: 4 SKSIIRQSHFLGTKIRNLRKRNHLTMEDLSTRCIRVDPENSPSVSYLSMIERGKRVPSAD 63 Query: 65 NMIILAHTLDTP 76 + ++A Sbjct: 64 MLEVIATVFQKE 75 >gi|72383761|ref|YP_293115.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|72123104|gb|AAZ65258.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 113 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R+ A +TQ+E Q IS LE G + ++ + +A L T LL Sbjct: 29 FGEAVKIKRRAAGMTQEEFAEVLEMNQQAISRLERGVVSPSLTMVARVAVALRTRPSTLL 88 Query: 82 K 82 + Sbjct: 89 R 89 >gi|15903845|ref|NP_359395.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae R6] gi|116516188|ref|YP_817208.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|15459488|gb|AAL00606.1| Transcriptional activator [Streptococcus pneumoniae R6] gi|116076764|gb|ABJ54484.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] Length = 299 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + G +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|86138032|ref|ZP_01056607.1| probable transcriptional regulator [Roseobacter sp. MED193] gi|85825059|gb|EAQ45259.1| probable transcriptional regulator [Roseobacter sp. MED193] Length = 233 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 37/70 (52%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S+ +R F +++R+ KLT K++ +G A S IS++E + D M+ LA Sbjct: 28 SEEFQDKRAAFGAMVQSLRRAQKLTLKQVSEASGLALSTISKIENSNLSPTYDVMLKLAA 87 Query: 72 TLDTPLWKLL 81 LDT + +L Sbjct: 88 GLDTDIVSIL 97 >gi|125972885|ref|YP_001036795.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256006006|ref|ZP_05430945.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417085|ref|ZP_06248105.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713110|gb|ABN51602.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] gi|255990029|gb|EEU00172.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408487|gb|EFB38745.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940876|gb|ADU74910.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 231 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +R+E +L+QK+I + G + ++ E K + + + LA D + Sbjct: 1 MAFAAMLKQLREEKRLSQKDIADYLGITRQAVASYELAKREPDYEVLKKLADYFDVSIDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ +IRKE +TQ E+ + G +S+ E S ++ ++ LA L + Sbjct: 2 KKQTLGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLSCPDVSSIPQLAEILGVSV 61 Query: 78 WKLLK 82 +L++ Sbjct: 62 DELMQ 66 >gi|313112940|ref|ZP_07798585.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624749|gb|EFQ08059.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 220 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R+E +TQ E+ + +S E G +I+ + LA L L L+ Sbjct: 6 FGAFLAQVRRERNMTQAELAQQLHVTDKAVSRWERGIGLPDINMLEPLADVLGLTLADLM 65 >gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 165 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+ + +++ G + ++S++E G + + + LA L L Sbjct: 14 LGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 72 >gi|227495164|ref|ZP_03925480.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226831616|gb|EEH63999.1| transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 109 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R IR+ T +E+ + + ++SE+E G+ + + ++ + L P Sbjct: 12 REHIGEVLRQIRRAQGSTLREVSAKAQVSLGYLSEIERGQKEASSEMLLSICTALGVPQS 71 Query: 79 KLLK 82 +L+ Sbjct: 72 LVLR 75 >gi|226310713|ref|YP_002770607.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093661|dbj|BAH42103.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 203 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R RK LTQ+E+ + IS E ST D + LA LD Sbjct: 55 LMLSQRLRTARKTKGLTQEELAEHVCTTKGTISNYENNHSTPPNDMLRQLADVLDVTTDW 114 Query: 80 LL 81 LL Sbjct: 115 LL 116 >gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 156 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R AK++ +++ R G + ++S++E G + D + +A L L Sbjct: 28 GEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERGLRKPSADVLSQIAKGLRVSAEVL 85 >gi|324996056|gb|EGC27967.1| transcriptional regulator [Streptococcus sanguinis SK678] Length = 178 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 75 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 132 >gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 204 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ RKE +TQ + + G + IS+ ETGKS + M+ L L + Sbjct: 2 DQIKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKSMPDTGIMLELCEHLKINV 61 Query: 78 WKLL 81 +LL Sbjct: 62 NELL 65 >gi|300908619|ref|ZP_07126082.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|300894026|gb|EFK87384.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 207 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R + TQ+++ R ++ IS E +S +I ++ ++ L LL Sbjct: 3 FADKMKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R ++ RK T K++ G ++ IS+ E GKST + +I + L P Sbjct: 15 RKFNGERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKSTPLFETLIKIVDKLKFP 72 >gi|297539296|ref|YP_003675065.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297258643|gb|ADI30488.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 147 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ +R E +QK++ + Q +I+ +E G I + + LA + ++++ Sbjct: 86 NSLSKLRLERGWSQKQLAEKLNTKQPYIARIENGIDDIQLSTIKKLAKVFGLSIVEIIE 144 >gi|282866678|ref|ZP_06275719.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558464|gb|EFB64025.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 87 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +R +R E T E+ R+G A+ + +LE G++ + LAH Sbjct: 5 PPDPDRDALRVTLARLRNERGWTFDELAGRSGLARRTLIDLEHGRAAGTVTTWHALAHAF 64 Query: 74 DTPLWKLL 81 D P+ +LL Sbjct: 65 DVPIEQLL 72 >gi|268610943|ref|ZP_06144670.1| DNA-binding phage protein [Ruminococcus flavefaciens FD-1] Length = 91 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R + Q E + G + +S E G +ID +I +A T L Sbjct: 1 MFYERVKELRNSLGINQVEFSKKIGVTKQCVSNWENGYIQPSIDMLIKIAKTFSVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|264679510|ref|YP_003279417.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210023|gb|ACY34121.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 265 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R F + R+ R+ +L+Q+ + + +S +ETG++ + + ++ LA L Sbjct: 3 PGARAPFGEHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRLAERLSV 62 Query: 76 PLWK 79 PL + Sbjct: 63 PLRE 66 >gi|257887265|ref|ZP_05666918.1| predicted protein [Enterococcus faecium 1,141,733] gi|257823319|gb|EEV50251.1| predicted protein [Enterococcus faecium 1,141,733] Length = 130 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77 F + +R L ++ ++G + S IS E G+ ++ + L+ L + Sbjct: 3 FGEKLKKLRISRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSI 59 >gi|271966422|ref|YP_003340618.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509597|gb|ACZ87875.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ T + N TG S +S LE GK ++ ++ LA PL L+ Sbjct: 12 VGPRLRALRQARSATLAALANETGLTASTLSRLENGKLLPTLEQLLPLARAHGVPLDDLV 71 >gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] Length = 144 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ KL+Q E+ +R GF++ ++ E G+ + D + +A + L Sbjct: 1 MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|227540308|ref|ZP_03970357.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239844|gb|EEI89859.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 193 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + IRK +T +++ +R G ++ IS++E ++ ++ +I + L+ L + K Sbjct: 11 SRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGALEIDLTEFFK 69 >gi|217969359|ref|YP_002354593.1| XRE family transcriptional regulator [Thauera sp. MZ1T] gi|217506686|gb|ACK53697.1| transcriptional regulator, XRE family [Thauera sp. MZ1T] Length = 99 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 1 MPRR--KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 MP+R +R P + E I F R R + Q+ + + G +S + ++E G Sbjct: 1 MPKRSIQRGRPTGTTTYEAEPAIAFGAAVREERTSQGIAQETLAHMAGIERSHMGKIERG 60 Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82 + + ++ +A L L+ Sbjct: 61 EHVPTLPLILKIARALKCSSAHLMT 85 >gi|254512804|ref|ZP_05124870.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532803|gb|EEE35798.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 200 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ R+ T +E G +S +S++E + + D + L LD +L Sbjct: 21 LGRSIRDARRAKGWTLEEAGRAAGIGRSTLSKIENNHTRPSFDIVRRLTQALDMSTPQLF 80 >gi|169832395|ref|YP_001695343.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] gi|168994897|gb|ACA35509.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] Length = 299 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + G +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a] Length = 500 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 26/58 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R +R+E ++Q E+ G + S+++++E + + ++ + Sbjct: 2 QKTFVGTRLRELREERAMSQVELARLLGISPSYLNQIEHNSRPLTVPVLLRITEAFGV 59 >gi|49082636|gb|AAT50718.1| PA4499 [synthetic construct] Length = 188 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ AK T ++ + +G S++S+ E + ++I ++ +A +L+ PL L Sbjct: 7 GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65 >gi|315641313|ref|ZP_07896389.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315482886|gb|EFU73406.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 53 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 30/52 (57%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 M N + +RK+AK Q + G +++++S+LE + +++ID + +A Sbjct: 1 MSIGENLKVLRKKAKKNQTKFAKDIGISRTYLSDLEHNRKSLSIDTIEKIAK 52 >gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK KLTQ++I + Q+ IS+ E G + + +I L L+T LL Sbjct: 3 NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTVPKNEKLIQLCEILETSSDYLL 60 >gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 432 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 R + +R + L+Q ++ G S IS++E+ ++ +I +A Sbjct: 242 DPQRRAASRFDLGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHIYPSLPALIKMA 301 Query: 71 HTLDTPLWKLL 81 L + Sbjct: 302 EVLSVEIASFF 312 >gi|295102573|emb|CBL00118.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii L2-6] Length = 138 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLW 78 M+F + R EA LTQ E+ + G I E G + + M +A L+T Sbjct: 1 MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTMQKIADALNTTTE 60 Query: 79 KLL 81 LL Sbjct: 61 YLL 63 >gi|296102579|ref|YP_003612725.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057038|gb|ADF61776.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 185 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|294678852|ref|YP_003579467.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477672|gb|ADE87060.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 478 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ + +R+ LTQ ++ G + S+I+ +E + ++ ++ LA D + Sbjct: 6 EKLVIGQRLKVLRQSLGLTQAQMAAELGVSASYITLIEADQRPASVKLLMRLAEVYDLNI 65 Query: 78 WKL 80 +L Sbjct: 66 SEL 68 >gi|227524839|ref|ZP_03954888.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227087996|gb|EEI23308.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 89 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ + ++ + R+EA LTQ ++ R QS I+ +E G + Sbjct: 14 PKFAEAYHADKEKSASALALY-----HTREEAGLTQADLAERANVPQSTIARIERGD-NV 67 Query: 62 NIDNMIILAHTLDT 75 D + +AH + Sbjct: 68 TFDKLAEIAHAMGK 81 >gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] Length = 64 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ L+Q + R A+ I+ +E K ++D + LAH LDT L L Sbjct: 2 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 59 >gi|206895690|ref|YP_002247149.1| helix-turn-helix, putative [Coprothermobacter proteolyticus DSM 5265] gi|206738307|gb|ACI17385.1| helix-turn-helix, putative [Coprothermobacter proteolyticus DSM 5265] Length = 67 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + R+ A LTQ+E+ N + I LE GK ++ + +A ++ PL ++ Sbjct: 4 FICNLKKYRQLAGLTQEELANMVHVRRETIVRLEAGKYNPSLKLAMDIAKAVNAPLEEIF 63 >gi|295838235|ref|ZP_06825168.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] gi|197698209|gb|EDY45142.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] Length = 291 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|55418008|ref|YP_133908.1| TrbA regulator protein [Plasmid pB3] gi|54969562|emb|CAG25998.1| TrbA regulator protein [Plasmid pB3] Length = 120 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|152975886|ref|YP_001375403.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024638|gb|ABS22408.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 64 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +++RK K++Q E+ N ++ I+ +E K ++ +A+ L+ + +L Sbjct: 3 NNIKSLRKVQKISQDELANLCNVSRQTINAIENNKYDPSLVLAFSIANYLNVKVDELF 60 >gi|10955210|ref|NP_044239.1| hypothetical protein R751p28 [Enterobacter aerogenes] gi|77993230|ref|YP_358820.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8] gi|84310686|ref|YP_447016.1| conjugal transfer protein TrbA [uncultured bacterium] gi|115345483|ref|YP_771668.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|466379|gb|AAA17042.1| TrbA [Plasmid R751] gi|1572547|gb|AAC64442.1| TrbA [Enterobacter aerogenes] gi|77733983|emb|CAI10747.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8] gi|84094966|emb|CAJ15577.1| TrbA repressor protein [uncultured bacterium] gi|115286660|gb|ABI92134.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 120 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|325832292|ref|ZP_08165291.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325486128|gb|EGC88582.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 129 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R LT++ + G + + +E+G + +D M ++ L PL +L+ Sbjct: 53 FGEAVRMQRAVCNLTKERLSLMVGINRLTLRRIESGDANPTLDVMYRISEGLGVPLSELI 112 >gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R ++Q+E+ R G S IS +E+ S ++ + + + L + Sbjct: 6 GGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFF 64 >gi|323706165|ref|ZP_08117733.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534458|gb|EGB24241.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 118 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ LT+++ G + +I +E + +++ + +A +L LL Sbjct: 14 VGMRIRAERERIGLTREQFAEAVGVSAMYIGHIERAQRVMSLKTFVRIAKSLHVSTDYLL 73 >gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] Length = 148 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N+ RK L+Q+E+ + G ++ IS+ ET ++ +I +A L + Sbjct: 1 MTLGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQSKQMAQLYHLSLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|304385876|ref|ZP_07368220.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328380|gb|EFL95602.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 196 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ++M + +R++ LTQ E+ ++ + IS E GK+ NI + LA Sbjct: 2 KPEGVDQMSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAEL 61 Query: 73 LDTPLWKL 80 + +L Sbjct: 62 YGVSIDEL 69 >gi|269976576|ref|ZP_06183561.1| toxin-antitoxin system, antitoxin component, Xre family [Mobiluncus mulieris 28-1] gi|269935377|gb|EEZ91926.1| toxin-antitoxin system, antitoxin component, Xre family [Mobiluncus mulieris 28-1] Length = 84 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 ++ + + F R R+ LTQ+ + + G + I+ LE+G ++ +D + Sbjct: 3 SVITRVVASDTEKFAQLVRFHRQAFGLTQQRLADMAGVTRPAITRLESGAPSVRLDTALK 62 Query: 69 LAHTLDTP 76 + L Sbjct: 63 VLDALGVE 70 >gi|268611917|ref|ZP_06145644.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 102 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IRK + ++ +G +Q IS+LE + I+ + L + L + Sbjct: 3 YGTRLREIRKAKGFSMYKLHKESGLSQGHISDLEKCINQPTIETLQKLLTPMGVTLAEFF 62 >gi|302549850|ref|ZP_07302192.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302467468|gb|EFL30561.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 190 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE ++T + TG + S +S LE+G +++ ++ +A L +L+ Sbjct: 10 VGPRLRQMRKEREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIARAHQVALDELV 69 >gi|228949224|ref|ZP_04111491.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810450|gb|EEM56804.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 68 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ ++ N + R E K++Q E+ G ++ IS +ETG+ ++L LD Sbjct: 1 MKDELVLQNRLKVARAEKKISQGELAEMVGVSRQTISSIETGQFCPTAKLALVLCVALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|229029469|ref|ZP_04185551.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|228731822|gb|EEL82722.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 404 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|160942173|ref|ZP_02089488.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] gi|158435064|gb|EDP12831.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] Length = 204 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LTQ+++ + +++ IS+ E+GK NI+++ ++ + +LL Sbjct: 3 FNEKLQQLRIGKNLTQQQLAEQLYVSRTAISKWESGKGYPNIESLKCISRFFSITIDELL 62 >gi|154497828|ref|ZP_02036206.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] gi|150273326|gb|EDN00471.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] Length = 122 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R+ A LTQ+ + ++S +E G +++ + L L Sbjct: 12 GARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQRLCSVLLVS 65 >gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62 >gi|117918776|ref|YP_867968.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117611108|gb|ABK46562.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 191 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|110638814|ref|YP_679023.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110281495|gb|ABG59681.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 99 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R E +TQ+E+ + G +S+IS +E + I + + Sbjct: 41 IQEARIEKGMTQEELAIKCGTTKSYISRIENNIKEVRISTLQKIVEL 87 >gi|297568975|ref|YP_003690319.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296924890|gb|ADH85700.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 123 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 19 RMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++ N R R+ ++ +E+ + + S++S++ETG ID + +A L + Sbjct: 60 RILDGENKIRVWREYRGMSARELASTAQISTSYLSQVETGSREGGIDTLKRIAAALRVSI 119 Query: 78 WKLL 81 L+ Sbjct: 120 DDLV 123 >gi|256397637|ref|YP_003119201.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363863|gb|ACU77360.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 321 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 27/54 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ LT ++ +R G ++ I +E G+ +++ + ++A L L+ Sbjct: 24 ELRRAEGLTLDDLADRAGLHRTSIGLIERGERLLSLTSAAMIASAFGMRLSDLI 77 >gi|255326129|ref|ZP_05367216.1| helix-turn-helix domain protein [Rothia mucilaginosa ATCC 25296] gi|255296840|gb|EET76170.1| helix-turn-helix domain protein [Rothia mucilaginosa ATCC 25296] Length = 74 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F R +RK K+TQ E+ G + I ++E G +I ++ +A L L Sbjct: 12 FGAQVRAVRKYEKITQMELAWMVGLSDKTIRDIERGLPGPSIGAVLKVAQELGIEL 67 >gi|253688262|ref|YP_003017452.1| putative phage repressor [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754840|gb|ACT12916.1| putative phage repressor [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 244 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 + + R L+QK + + G +Q+ I ++E GK++ ++ L++ L P Sbjct: 2 KTTLAERLKTARIAQGLSQKALGDLIGVSQAAIQKIEVGKASQTT-KIVELSNALHVRPE 60 Query: 78 W 78 W Sbjct: 61 W 61 >gi|229892445|gb|ACQ89867.1| VE07 [Enterococcus faecalis] Length = 433 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R +R L+Q++ ++ +++S++S +ETGK TIN + + T Sbjct: 4 QEIRQLRNRLGLSQQQFADKLHWSKSYLSMIETGKRTINKTAIERINQTF 53 >gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E LTQ+++ + G +S+ E G +I+ + L+ L TP+ LL Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETLL 65 >gi|258406011|ref|YP_003198753.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798238|gb|ACV69175.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 25/50 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R + LTQ E+ +TG QS IS +E GK I + LA L+ Sbjct: 62 LRGARNKEGLTQVELAEKTGIPQSHISSMENGKKEIGKERAKRLAEVLNI 111 >gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] Length = 257 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ L+Q+++ G + +S+ E G +T + ++ L+ + +L+ Sbjct: 9 FSEQLIKLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTTPELGKLVQLSDYFQLSIDELV 68 >gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE L+Q E+ + + +S ETG++ NI+ + +L+ D + LL Sbjct: 7 ISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKLLSKLFDVSINTLL 62 >gi|212635362|ref|YP_002311887.1| Repressor of flagellae [Shewanella piezotolerans WP3] gi|212556846|gb|ACJ29300.1| Repressor of flagellae, putative [Shewanella piezotolerans WP3] Length = 116 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLW 78 M N + RK +T+ E+ +R+G + + +S +E G+ + N++ ++ ++ L+T + Sbjct: 1 MTIGENIKLKRKSLGMTRSELIDRSGVSTAQLSRMERGEQNNPNLETLVAISTALNTSID 60 Query: 79 KLL 81 +++ Sbjct: 61 EIV 63 >gi|187919377|ref|YP_001888408.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717815|gb|ACD19038.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 183 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK+ L+Q+E+ R G IS +E + + ++ ++ L + L + Sbjct: 5 VATRLQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus pyogenes M1 GAS] Length = 248 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LT +++ G +S IS+ E G + I + +A K++ Sbjct: 7 FPAMVKELRLSKNLTMEQLAEEVGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMM 66 >gi|324994099|gb|EGC26013.1| transcriptional regulator [Streptococcus sanguinis SK678] gi|332366386|gb|EGJ44137.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 71 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|324991744|gb|EGC23676.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325686944|gb|EGD28968.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325688753|gb|EGD30762.1| transcriptional regulator [Streptococcus sanguinis SK115] gi|325697682|gb|EGD39567.1| transcriptional regulator [Streptococcus sanguinis SK160] gi|327459306|gb|EGF05652.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327462426|gb|EGF08751.1| transcriptional regulator [Streptococcus sanguinis SK1057] gi|332362960|gb|EGJ40749.1| transcriptional regulator [Streptococcus sanguinis SK49] gi|332364603|gb|EGJ42372.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 71 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|302530038|ref|ZP_07282380.1| transcriptional regulator [Streptomyces sp. AA4] gi|302438933|gb|EFL10749.1| transcriptional regulator [Streptomyces sp. AA4] Length = 172 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 23/47 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 RK A L+Q+E+ R G ++ +S E G+ + +D + L Sbjct: 4 AELLTTARKAADLSQQELAERAGTSRPTLSAYERGRKSPTLDTVTRL 50 >gi|258654828|ref|YP_003203984.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558053|gb|ACV80995.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 156 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M R R+ A L +++ G + ++S++E G + + +A +L Sbjct: 7 ESMSLGEMIRRQREMASLPMRQLAAMAGISNPYLSQIERGLRDPSDQVLNAIADSLQMSA 66 Query: 78 WKLLKP 83 L P Sbjct: 67 DSLRPP 72 >gi|229017069|ref|ZP_04173988.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229023250|ref|ZP_04179760.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228738044|gb|EEL88530.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228744242|gb|EEL94325.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 404 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTELAG-SKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|212697015|ref|ZP_03305143.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM 7454] gi|212675985|gb|EEB35592.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM 7454] Length = 489 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +Q+ + + TG ++ IS +E+ +ID + LA L + L Sbjct: 17 RKSKNFSQRNLSDLTGINRTMISRIESCDYVPSIDQLQALAEVLGFDIVDLF 68 >gi|149917149|ref|ZP_01905649.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149822065|gb|EDM81458.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 128 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++D E F + R++RK LTQ+ + + G + I LE G + ++ ++ L+ Sbjct: 1 MTDVYEVEGRRFGRHVRSLRKTRGLTQEALARKAGLSGDTIRRLEGGTFSPSLTTLVRLS 60 Query: 71 HTLDTPLWKLL 81 L+ L +L Sbjct: 61 RGLELRLSTIL 71 >gi|149004582|ref|ZP_01829270.1| hypothetical protein CGSSp14BS69_01039 [Streptococcus pneumoniae SP14-BS69] gi|237650099|ref|ZP_04524351.1| hypothetical protein SpneC1_05127 [Streptococcus pneumoniae CCRI 1974] gi|237822301|ref|ZP_04598146.1| hypothetical protein SpneC19_08349 [Streptococcus pneumoniae CCRI 1974M2] gi|147757531|gb|EDK64557.1| hypothetical protein CGSSp14BS69_01039 [Streptococcus pneumoniae SP14-BS69] Length = 85 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ L QK+I F S +++E G+ + D ++ L+ D LL Sbjct: 3 RRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60 >gi|146319399|ref|YP_001199111.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321603|ref|YP_001201314.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752422|ref|YP_003025563.1| DNA-binding protein [Streptococcus suis SC84] gi|253754248|ref|YP_003027389.1| DNA-binding protein [Streptococcus suis P1/7] gi|253756182|ref|YP_003029322.1| DNA-binding protein [Streptococcus suis BM407] gi|145690205|gb|ABP90711.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692409|gb|ABP92914.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816711|emb|CAZ52353.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251818646|emb|CAZ56481.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251820494|emb|CAR47248.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292559027|gb|ADE32028.1| Predicted transcriptional regulator [Streptococcus suis GZ1] gi|319758828|gb|ADV70770.1| transcriptional regulator [Streptococcus suis JS14] Length = 62 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R ++Q ++ G ++ I+ +E K ++D I LA L T L L Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLF 59 >gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88] gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88] Length = 219 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 33/56 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + R EA ++QK++ + G ++++I+E+ETGK IN + + + L+ L Sbjct: 4 VGRNIKTYRLEANMSQKQLGKKIGVSENFINEIETGKRIINENLIDRIGKILNKDL 59 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 35/64 (54%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ ++ + RKE +T ++ + G +Q +S E G + IN+ +++ +A L Sbjct: 2 KMKQDHLLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASIL 61 Query: 74 DTPL 77 +TP+ Sbjct: 62 ETPI 65 >gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 182 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 4 GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|257141046|ref|ZP_05589308.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 193 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 70 >gi|257784825|ref|YP_003180042.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473332|gb|ACV51451.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 75 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R++RK+ +LTQ+ + R Q+++S++E+G+ + + + A L +L Sbjct: 8 LVGQCLRDLRKKQRLTQETVAERLAGDQAFVSKVESGERGVKLGEVYAFAEALGIEASEL 67 Query: 81 LK 82 ++ Sbjct: 68 IE 69 >gi|209964814|ref|YP_002297729.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209958280|gb|ACI98916.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 232 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPRR ++ + + E + + R R ++Q ++ G + + E G + Sbjct: 1 MPRRTKNAAVAALESVIESHV-ASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNR 59 Query: 61 INIDNMIILAHTLDTPL 77 +++ + LA LD PL Sbjct: 60 VSVGKLYRLAEILDVPL 76 >gi|134302287|ref|YP_001122256.1| transcriptional regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|134050064|gb|ABO47135.1| helix-turn-helix DNA binding protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 71 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ LTQ ++ +G +I E+E GK+T +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSLG 63 >gi|56708158|ref|YP_170054.1| transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|89256451|ref|YP_513813.1| transcriptional regulator [Francisella tularensis subsp. holarctica LVS] gi|110670629|ref|YP_667186.1| transcriptional regulator [Francisella tularensis subsp. tularensis FSC198] gi|115314886|ref|YP_763609.1| transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|156502554|ref|YP_001428619.1| helix-turn-helix domain-containing protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010327|ref|ZP_02275258.1| hypothetical protein Ftulh_06310 [Francisella tularensis subsp. holarctica FSC200] gi|187931886|ref|YP_001891871.1| transcriptional regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|224457260|ref|ZP_03665733.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254367787|ref|ZP_04983808.1| transcriptional regulator [Francisella tularensis subsp. holarctica 257] gi|254370643|ref|ZP_04986648.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874966|ref|ZP_05247676.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|290953909|ref|ZP_06558530.1| transcriptional regulator [Francisella tularensis subsp. holarctica URFT1] gi|295312709|ref|ZP_06803452.1| transcriptional regulator [Francisella tularensis subsp. holarctica URFT1] gi|56604650|emb|CAG45708.1| transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|89144282|emb|CAJ79565.1| transcriptional regulator [Francisella tularensis subsp. holarctica LVS] gi|110320962|emb|CAL09091.1| transcriptional regulator [Francisella tularensis subsp. tularensis FSC198] gi|115129785|gb|ABI82972.1| possible transcriptional regulator [Francisella tularensis subsp. holarctica OSU18] gi|134253598|gb|EBA52692.1| transcriptional regulator [Francisella tularensis subsp. holarctica 257] gi|151568886|gb|EDN34540.1| hypothetical protein FTBG_00435 [Francisella tularensis subsp. tularensis FSC033] gi|156253157|gb|ABU61663.1| helix-turn-helix domain protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|187712795|gb|ACD31092.1| transcriptional regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|254840965|gb|EET19401.1| transcriptional regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159373|gb|ADA78764.1| hypothetical protein NE061598_06205 [Francisella tularensis subsp. tularensis NE061598] Length = 75 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R RK+ LTQ ++ +G +I E+E GK+T +I +I LA +L Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSLG 63 >gi|33593633|ref|NP_881277.1| putative transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33563706|emb|CAE42939.1| putative transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|332383038|gb|AEE67885.1| putative transcriptional regulatory protein [Bordetella pertussis CS] Length = 206 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P P + + R +RK K T + + G + ++S LE G+ + Sbjct: 12 PPMTAKSPPVPAPSPEQ---IGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSA 68 Query: 62 NIDNMIILAHTLDTPLWKLL 81 ++ + +A L + L LL Sbjct: 69 SVGTLHTVAGALGSSLSALL 88 >gi|27377722|ref|NP_769251.1| hypothetical protein blr2611 [Bradyrhizobium japonicum USDA 110] gi|27350867|dbj|BAC47876.1| blr2611 [Bradyrhizobium japonicum USDA 110] Length = 110 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P P+ A L E + ++ R L+++E+ R+G ++ +I+++E GK Sbjct: 33 LPGSCAVPPYSETAFLAE---LGDRLKSSRTRCDLSRRELARRSGISERYIAQIEAGKGN 89 Query: 61 INIDNMIILAHTLD 74 ++I ++ LA + Sbjct: 90 VSIVLLLRLASAIH 103 >gi|84686686|ref|ZP_01014578.1| hypothetical protein 1099457000242_RB2654_00590 [Maritimibacter alkaliphilus HTCC2654] gi|84665360|gb|EAQ11838.1| hypothetical protein RB2654_00590 [Rhodobacterales bacterium HTCC2654] Length = 199 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R+ ++Q+ + + G QS IS++E G + + +++ LA LD L Sbjct: 9 AESLKAARERKGISQRALSAKAGVPQSHISKIENGAVDLRLSSLVELARVLDLEL 63 >gi|113968668|ref|YP_732461.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113883352|gb|ABI37404.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] Length = 191 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A +T L L Sbjct: 8 LAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNTSLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] Length = 116 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R++ LTQ E+ N G + IS E+ ++ + D +I L+ D LL Sbjct: 3 FHLRLKQLRQKKGLTQGELANILGLKPTAISNYESNRNEPSFDKLIALSKEFDVTCDYLL 62 >gi|228918792|ref|ZP_04082190.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840864|gb|EEM86108.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 108 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ + ++S I E + + + +I LA + Sbjct: 2 KTFGNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRLADYFNVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] Length = 64 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ + +R +LTQ+++ ++ G ++ I+ +E GK ++ LAH TP+ + Sbjct: 3 NSIKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFDPSLPLAFKLAHLFHTPIEGIFT 61 >gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 176 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK + L+Q E+ G ++ IS+ E + ++ + L L Sbjct: 1 MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|167767203|ref|ZP_02439256.1| hypothetical protein CLOSS21_01722 [Clostridium sp. SS2/1] gi|317498205|ref|ZP_07956506.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711178|gb|EDS21757.1| hypothetical protein CLOSS21_01722 [Clostridium sp. SS2/1] gi|316894560|gb|EFV16741.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 187 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR ++ + +TG ++S ++++E G + ++ + + L +L+ Sbjct: 11 VAVNLKRIRTSKGMSLDVLSEQTGVSKSMLAQIEKGTANPSLGVLGKITSGLRIEFQELI 70 >gi|157324993|ref|YP_001468419.1| gp34 [Listeria phage A500] gi|66733001|gb|AAY52820.1| gp34 [Listeria phage A500] Length = 73 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ R +A LTQ+E+ G A+ I +LE G+ +I+ + ++ LD+ + ++ Sbjct: 5 FKEKRNKAGLTQRELGIAVGLAEISIRKLENGERDPSINTAVKISKALDSNMEEIF 60 >gi|77412889|ref|ZP_00789093.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161029|gb|EAO72136.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 299 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|325261320|ref|ZP_08128058.1| DNA-binding protein [Clostridium sp. D5] gi|324032774|gb|EGB94051.1| DNA-binding protein [Clostridium sp. D5] Length = 185 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 34/59 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R++ L+ +E+ + A S IS++ETGK++ N+ + + +LD P++ L Sbjct: 7 GKTIKDKRQDMNLSLRELSAISQVAGSTISQIETGKTSPNLLTLKAICDSLDIPVFSLF 65 >gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 114 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 35/60 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+E+ ++ G ++ +S+ E+ +ST +++ +II++ +LK Sbjct: 4 ADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILK 63 >gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 147 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R++ LTQ+++ R + +S ETG++ N D + +L+ D + LL Sbjct: 7 LKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKLLSRVFDVSINTLL 62 >gi|295697361|ref|YP_003590599.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412963|gb|ADG07455.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 143 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F + +R E T +++ R+G + S IS LE G + + LA L+ PL Sbjct: 5 FGVKLKQLRTERGWTLEQLSARSGLSISHISSLERGTRMKPSFQVAVRLARALEVPLATF 64 Query: 81 LK 82 L+ Sbjct: 65 LE 66 >gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ LTQ++ + +S E G + ++D +I ++ + L +LL Sbjct: 7 GEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNNLPDLDILIEISDYYEIDLRELL 65 >gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L] Length = 69 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++IRKE L+Q ++ N G +++ IS +ETG+ +ILA L+ + Sbjct: 9 NRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIALEKKFEDIF 66 >gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length = 477 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R+E LTQ + G + S++++LE + I + ++ L D P Sbjct: 10 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLP 63 >gi|167768912|ref|ZP_02440965.1| hypothetical protein ANACOL_00229 [Anaerotruncus colihominis DSM 17241] gi|167668552|gb|EDS12682.1| hypothetical protein ANACOL_00229 [Anaerotruncus colihominis DSM 17241] Length = 72 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+I N R E +++Q+E+ + + +E+E + N++ + + P Sbjct: 7 RVILACNLLEFRAEKRISQEEMAFQIDLSVKSYAEIERAEVHTNLEILDRIGQVTGMPPA 66 Query: 79 KLLKP 83 +LL P Sbjct: 67 QLLTP 71 >gi|149190536|ref|ZP_01868806.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1] gi|148835660|gb|EDL52627.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1] Length = 106 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A +TQ+++ +TG + S I +E G +I++D+ L+ +L Sbjct: 11 LRRFRDLAGITQEQMAVKTGISLSTIKRIERGVRSISLDDYHKYLDVLELSHIDVL 66 >gi|327441616|dbj|BAK17981.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 260 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RKE + +Q+ + + ++ IS+ E G+ + ++++ + + + LL Sbjct: 3 FGEKLFKLRKEKEYSQEALAEKLNTSRQAISKWENGQGFPETEKILMIGNIFEVSIDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|326330368|ref|ZP_08196678.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] gi|325951905|gb|EGD43935.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium Broad-1] Length = 248 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ A L+Q E+ + G +Q+ +S E G + + + H L Sbjct: 32 LQAARRVAGLSQAELAEQAGTSQATLSAYERGAKSPALKVAERILHATGLEL 83 >gi|307704502|ref|ZP_07641410.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621915|gb|EFO00944.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 116 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ ++ QS + E GK+ ++++N IL+ + LL Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSLENAQILSEYFGVSIPYLL 60 >gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 313 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R +R+E +TQ+++ G +S+ E ++T +I + LA+ D Sbjct: 2 MTIGSTIRQLRQEQDITQEQLAEALGITSRAVSQWECDRTTPDISQLPALANFFDVTTDH 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|302391895|ref|YP_003827715.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203972|gb|ADL12650.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 184 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 IRK+ + ++ T ++S + ++E G S + + +A L+ Sbjct: 9 GTKLHQIRKKKGYSLSKLEEVTEVSKSMLGQIERGTSNPTVKTLWKIAKGLNVS 62 >gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 119 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RKE KLTQ ++ +S I E G + + LA + + LL Sbjct: 9 GNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENGLREPSAGTIAYLAKYFNVSVDYLL 67 >gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 111 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +++R+E L+Q+ + ++ +Q I + E + NID + +A D + L+ Sbjct: 2 NRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLI 59 >gi|293399779|ref|ZP_06643925.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306179|gb|EFE47422.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 65 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +TQKE+ G + ++ +E G +I I + LD L L Sbjct: 6 RIKAARAAKDMTQKELAECVGVTRQTMNAIEKGDYNSSIRLCIAICKALDKTLNDLF 62 >gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] Length = 111 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R R+E +Q+++ ++ +S E G + D + LA + Sbjct: 8 GNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKSMDDFFP 67 Query: 83 P 83 P Sbjct: 68 P 68 >gi|160934666|ref|ZP_02082052.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] gi|156866119|gb|EDO59491.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] Length = 124 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F + +RK+ K+TQK++ + G IS ETG ++ +I LA D + Sbjct: 2 KNLFGAILQELRKDHKITQKDLADILGVTSKTISNYETGSQFPDLLIIIKLAEYFDVNMD 61 Query: 79 KL 80 L Sbjct: 62 YL 63 >gi|126654396|ref|ZP_01726142.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] gi|126589164|gb|EAZ83345.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] Length = 68 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R +RK K+TQ+++ G ++ I +E+GK +++ ++ + Sbjct: 3 NRIRELRKSKKITQEDLSKVVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53 >gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 325 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR E A L R + + R+ R A+++ +++ + G + ++S++E G Sbjct: 53 PRPPAKEAFDPVAALNVRDL-GDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRP 111 Query: 62 NIDNMIILAHTLDTPLWKL 80 + + + +A L L Sbjct: 112 SAEILQQIAKALRISAEVL 130 >gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 202 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +T +++ G + +IS+ E + ++ ++ +A L L +L Sbjct: 17 GAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSLRKIAQVLGVSLQDIL 75 >gi|315657039|ref|ZP_07909924.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492431|gb|EFU82037.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 179 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 31/71 (43%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R P + R R +R+ LT +++ + + ++SE+E G+ + + Sbjct: 71 RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 130 Query: 66 MIILAHTLDTP 76 + + + L+ P Sbjct: 131 LASICYALEAP 141 >gi|313890139|ref|ZP_07823774.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121500|gb|EFR44604.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 168 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + ++KE LTQ E+ QS + E GK+ ++++N IL+ LL Sbjct: 3 NRLKELQKEKGLTQAELAQVINTNQSQYGKYENGKTNLSLENAKILSDYFGVSPAYLL 60 >gi|313899139|ref|ZP_07832664.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956079|gb|EFR37722.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 65 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R LTQ+++ + + I+ +E G +I+ I + L L L Sbjct: 6 KLKAARAAMDLTQEQLAEKVSVTRQTINAIEKGDYNPSINLCITICRVLGKTLNDLF 62 >gi|311108474|ref|YP_003981327.1| hypothetical protein AXYL_05312 [Achromobacter xylosoxidans A8] gi|310763163|gb|ADP18612.1| helix-turn-helix family protein 12 [Achromobacter xylosoxidans A8] Length = 190 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R I + +R+E + E+ R G +++ +S LE + + + L + Sbjct: 12 DRRIAGR-LKALRQERGWSLDELAGRAGLSRATLSRLENAEVSPTASALGKLCGAYGLTM 70 Query: 78 WKLLK 82 +L++ Sbjct: 71 SRLMR 75 >gi|300869668|ref|YP_003784539.1| putative transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300687367|gb|ADK30038.1| putative transcriptional regulator [Brachyspira pilosicoli 95/1000] Length = 141 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK T I + + ++ +E GK I+I N+ +A L+ P+ LL Sbjct: 39 GSRIRIVRKSQNRTISYIADMAKISPKYLQGVEVGKRNISITNLNKIAKVLNIPISLLL 97 >gi|298229344|ref|ZP_06963025.1| Tn5251 transcriptional regulator Cro/CI family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255907|ref|ZP_06979493.1| Tn5251 transcriptional regulator Cro/CI family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503697|ref|YP_003725637.1| replication initiation protein [Streptococcus pneumoniae TCH8431/19A] gi|298239292|gb|ADI70423.1| replication initiation protein [Streptococcus pneumoniae TCH8431/19A] Length = 420 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QQLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLFEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|184201643|ref|YP_001855850.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201] gi|183581873|dbj|BAG30344.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201] Length = 65 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R+EA LTQK++ + +G ++ + +ETG+ + ++ A L Sbjct: 11 IRRARREAGLTQKDLADLSGVSERTVRAIETGRGNPTVAALVATAGVLG 59 >gi|154507559|ref|ZP_02043201.1| hypothetical protein ACTODO_00038 [Actinomyces odontolyticus ATCC 17982] gi|153797193|gb|EDN79613.1| hypothetical protein ACTODO_00038 [Actinomyces odontolyticus ATCC 17982] Length = 101 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 30/50 (60%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 E L+Q+++ RT S+I ++E G+ +++ +++ +AH DT L+ Sbjct: 47 EEPLSQEKLAERTTLHWSYIGQVERGQRNLSLHSILRIAHAQDTDAGGLV 96 >gi|148272408|ref|YP_001221969.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830338|emb|CAN01272.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 209 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R++R+ + + R + S +S +ETG I +D ++ +A L+T L L Sbjct: 10 LVRQRIRSLREARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIAQALETSLDAL 69 Query: 81 LK 82 ++ Sbjct: 70 IE 71 >gi|330943461|gb|EGH45807.1| DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 151 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ + + + +R +Q+++ + +S+IS LE G+ ++ +D LA L+ Sbjct: 4 RIAYGSALKFLRARQDSSQEDLGHA--IDRSYISRLERGERSVTLDVSHSLAEALEVDPL 61 Query: 79 KLL 81 LL Sbjct: 62 TLL 64 >gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 255 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R LTQ+++ G + + E ++T +D + LA + +L+ Sbjct: 6 ENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRATPPLDKLNRLASLFGVSMDQLI 63 >gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 103 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +RK++ L+ ++ N TG + +ISELE + + + ++ + L+ Sbjct: 6 LGKRIKELRKQSGLSTTKLSNLTGISSGYISELENNLKSPSAEILLKIIDALNI 59 >gi|291541833|emb|CBL14943.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 74 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNR-----TGFAQSWISELETGKSTINIDNMIILAHTLD 74 I N R IR+ +TQ++ + +S ++++E G+ I ID + ++ L+ Sbjct: 7 KIVGGNIRKIRESKNITQEQFAAKLQLMGCDITRSAVAKIEVGQRHIYIDELKLIKDILE 66 Query: 75 TPLWKLL 81 T +L+ Sbjct: 67 TTYDELI 73 >gi|255323002|ref|ZP_05364138.1| putative ankyrin repeat protein [Campylobacter showae RM3277] gi|255299864|gb|EET79145.1| putative ankyrin repeat protein [Campylobacter showae RM3277] Length = 412 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R+ + Q+E+ ++ + IS E KS + ++ LA +LL Sbjct: 7 AKNIKDAREGINMLQQELADKLNITRPVISNWENAKSEPSSTQLLKLADIFGVSADRLL 65 >gi|218893591|ref|YP_002442460.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773819|emb|CAW29633.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 187 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ AK T ++ + +G S++S+ E + ++I ++ +A +L+ PL L Sbjct: 7 GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65 >gi|254382154|ref|ZP_04997515.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194341060|gb|EDX22026.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 269 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R ++Q E+ R G + IS +ETG++ + + ++ LA LD Sbjct: 2 TPTTTSSVGALLRTWRGRRGISQLELAGRAGSSSRHISFVETGRARPSEELLLRLADQLD 61 Query: 75 TPLWK 79 P+ + Sbjct: 62 VPVRE 66 >gi|189424198|ref|YP_001951375.1| XRE family plasmid maintenance system antidote protein [Geobacter lovleyi SZ] gi|189420457|gb|ACD94855.1| plasmid maintenance system antidote protein, XRE family [Geobacter lovleyi SZ] Length = 114 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 10 HLSDAILRERMIF--------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +D + R F R +TQ ++ TG Q ISE+E GK I Sbjct: 35 QEADDSIPWREAFPEFAGNEAGTTLSGFRHREGMTQTQLAEATGIPQRHISEMENGKRII 94 Query: 62 NIDNMIILAHTLDTPLWKLL 81 I + LA L +LL Sbjct: 95 GIVSAKRLAEALHCDYRRLL 114 >gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] Length = 509 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 133 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ ++RK +TQ E+ + G +S+ E S +I+ + LA DT + Sbjct: 2 KKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSV 61 Query: 78 WKLLK 82 +L++ Sbjct: 62 DELMQ 66 >gi|282861650|ref|ZP_06270714.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282563466|gb|EFB69004.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 278 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++D S R F R+ R+E TQ+E+ + G++ + +S +ETG+ + Sbjct: 3 RKDLNPDSSP----RAAFGARLRSAREERGWTQEELGEQVGYSGTHLSSVETGRKLPTLR 58 Query: 65 NMIILAHTLDT 75 + L Sbjct: 59 LVRALDRVFGK 69 >gi|228920493|ref|ZP_04083838.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839123|gb|EEM84419.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 404 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ + LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 145 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK KL+Q ++ +R GF++ ++ E G+ + D + +A + L Sbjct: 1 MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|311740707|ref|ZP_07714534.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304227|gb|EFQ80303.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 69 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +L+Q E+ + G ++ I+ +E G + ++ + + H L + ++ Sbjct: 8 VRKWRRWVELSQAELAEKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIF 63 >gi|154484438|ref|ZP_02026886.1| hypothetical protein EUBVEN_02151 [Eubacterium ventriosum ATCC 27560] gi|149734915|gb|EDM50832.1| hypothetical protein EUBVEN_02151 [Eubacterium ventriosum ATCC 27560] Length = 108 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E KL+ E+ + ++S I +LE G + ++ + A + +L Sbjct: 9 GVNLRQLRIENKLSPGEVSDIVDKSESHIMQLERGSRNLTVEMLCKFADVYNADPNTIL 67 >gi|148800315|gb|ABR12880.1| HipB2 [Mesorhizobium sp. CJ1] Length = 100 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 1 MPRRKRDEPH--------LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWIS 52 MPR K+ L + + F + IR+ LTQ++ TG + ++ Sbjct: 1 MPRWKKPSKAEISTLRALLREKAEAGELRFPDAVAEIRRSLGLTQEQFAEITGTTKRQVA 60 Query: 53 ELETGKSTINIDNMIILAHTLDTPL 77 E+ETGK+ ++ + +A L Sbjct: 61 EIETGKANPTVETLQRIAGLFGFSL 85 >gi|157371454|ref|YP_001479443.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157323218|gb|ABV42315.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IR + L+Q+ + +G S IS +E K + I + L L Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 >gi|125974945|ref|YP_001038855.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715170|gb|ABN53662.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 142 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E L+QK++ + G ++ ++ ETGKS + + LA + LL Sbjct: 3 FNEILRQLRTEKNLSQKDVADAIGVDRTTYTKYETGKSQPDFVTIQKLAEFYSVSVDYLL 62 >gi|332358032|gb|EGJ35865.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 62 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|302562689|ref|ZP_07315031.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302480307|gb|EFL43400.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 277 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +L+Q ++ + +S +ETGKS + D ++ LA LD PL + Sbjct: 4 HTVGELLRQWRHRRRLSQLDLAIAADVSARHVSLVETGKSRPSADMVLRLADQLDVPLRE 63 >gi|300786099|ref|YP_003766390.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795613|gb|ADJ45988.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 197 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 39/71 (54%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++DAI + + +R + ++T ++ TG ++S +S LE+G+ +++ ++ +A Sbjct: 1 MTDAITQALAEVGPRLKRVRTQRRVTLADLSAATGISKSTLSRLESGQRKPSLELLLPIA 60 Query: 71 HTLDTPLWKLL 81 PL +L+ Sbjct: 61 QAHQVPLDELV 71 >gi|258540564|ref|YP_003175063.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257152240|emb|CAR91212.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 215 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + R++ LTQ ++ + + IS E G+S +I ++ ++ L + Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actG] gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actF] gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] Length = 509 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ +Q ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|254518453|ref|ZP_05130509.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226912202|gb|EEH97403.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 115 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R++R E +TQ+++ + G ++ IS+ E K + D LA L Sbjct: 2 QSFGERLRSLRLEKDMTQEDVASYFGLHKTRISQYELNKRQADDDMKKKLAEFFGVSLDY 61 Query: 80 LL 81 L+ Sbjct: 62 LM 63 >gi|199599444|ref|ZP_03212837.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199589656|gb|EDY97769.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 216 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + R++ LTQ ++ + + IS E G+S +I ++ ++ L + Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|197302440|ref|ZP_03167495.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC 29176] gi|197298338|gb|EDY32883.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC 29176] Length = 130 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R+E TQK++ ++ S ETG NID + L+ + +LL Sbjct: 12 LAKNLLQLRQEHHYTQKQLGDKLNITHQAYSYYETGHRDPNIDMLTKLSALYGFSIEQLL 71 Query: 82 K 82 Sbjct: 72 T 72 >gi|195867537|ref|ZP_03079540.1| transcriptional regulator, Cro/CI family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660781|gb|EDX54035.1| transcriptional regulator, Cro/CI family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 425 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 37 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 96 Query: 79 KLL 81 L Sbjct: 97 MLF 99 >gi|23664437|gb|AAN39374.1| regulator [Azoarcus evansii] Length = 300 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR +T+K + G ++ ++ LE G ++I + +A L+ L +LL Sbjct: 29 LGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEGGDGNVSIVLLHNIARALNVSLIELL 88 Query: 82 KP 83 P Sbjct: 89 AP 90 >gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H] gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H] Length = 203 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A L+Q+++ ++ G ++S ++ ETG+S ++ LA L LL Sbjct: 83 LGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRSGHVGKHLGSLAQVLGVEPEVLL 142 Query: 82 K 82 Sbjct: 143 T 143 >gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 182 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|323700205|ref|ZP_08112117.1| helix-turn-helix domain protein [Desulfovibrio sp. ND132] gi|323460137|gb|EGB16002.1| helix-turn-helix domain protein [Desulfovibrio desulfuricans ND132] Length = 294 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LT + + RTG +++ I E+G+ I +D + +A L L LL Sbjct: 11 LGERLRAYRIGKNLTPENVAQRTGISRAAIYRYESGQ-PIRVDVLGKIADLLQVSLESLL 69 >gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM 12885] gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 131 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R +R+ LTQ+E+ G ++ I E G+ ++ + LAH L T + Sbjct: 1 MQFADRLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISY 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|297200365|ref|ZP_06917762.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197709485|gb|EDY53519.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 289 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + Sbjct: 9 VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68 >gi|49482914|ref|YP_040138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|258422580|ref|ZP_05685487.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282903282|ref|ZP_06311173.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282905066|ref|ZP_06312924.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908042|ref|ZP_06315873.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282921517|ref|ZP_06329235.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|283957486|ref|ZP_06374939.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295427234|ref|ZP_06819869.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590417|ref|ZP_06949056.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|49241043|emb|CAG39718.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257847232|gb|EEV71239.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|270055331|gb|ACZ58824.1| hypothetical protein SAP033A_008 [Staphylococcus aureus] gi|270300061|gb|ACZ68867.1| hypothetical protein SAP076A_042 [Staphylococcus aureus] gi|270300067|gb|ACZ68873.1| hypothetical protein SAP077A_006 [Staphylococcus aureus] gi|270300132|gb|ACZ68938.1| hypothetical protein SAP078A_013 [Staphylococcus aureus] gi|270300177|gb|ACZ68983.1| hypothetical protein SAP054A_013 [Staphylococcus aureus] gi|270300380|gb|ACZ69186.1| hypothetical protein SAP067A_013 [Staphylococcus aureus] gi|270300493|gb|ACZ69299.1| hypothetical protein SAP075A_013 [Staphylococcus aureus] gi|281334480|gb|ADA61564.1| hypothetical protein SAP019A_018 [Staphylococcus aureus] gi|282166762|gb|ADA80778.1| hypothetical protein SAP102A_031 [Staphylococcus aureus] gi|282315932|gb|EFB46316.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282327707|gb|EFB57989.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331891|gb|EFB61402.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596237|gb|EFC01198.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283790937|gb|EFC29752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295128622|gb|EFG58253.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576716|gb|EFH95431.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|315192996|gb|EFU23400.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 113 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ + +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|15599695|ref|NP_253189.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099916|ref|ZP_01363834.1| hypothetical protein PaerPA_01000937 [Pseudomonas aeruginosa PACS2] gi|116052530|ref|YP_792844.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254238841|ref|ZP_04932164.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719] gi|254244690|ref|ZP_04938012.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192] gi|296391210|ref|ZP_06880685.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313107088|ref|ZP_07793288.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950738|gb|AAG07887.1|AE004863_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587751|gb|ABJ13766.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170772|gb|EAZ56283.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719] gi|126198068|gb|EAZ62131.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192] gi|310879790|gb|EFQ38384.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 187 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ AK T ++ + +G S++S+ E + ++I ++ +A +L+ PL L Sbjct: 7 GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65 >gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] Length = 219 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R+ ++Q+E+ + + +S+ E S + + ++ +A L+ + L Sbjct: 1 MIGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSVPDAEVLMRMASLLEVSVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|325519127|gb|EGC98605.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 203 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E +LT ++ G ++S +SE+E K+ I L + L L +L Sbjct: 26 VGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 >gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] Length = 111 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + RKE + E+ + G A+S++S +E ++ +I + ++ LD + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 104 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RKE +TQ ++ NR +S IS+ E G ++D + ++ + + L Sbjct: 3 LLGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYL 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|302520148|ref|ZP_07272490.1| DNA-binding protein [Streptomyces sp. SPB78] gi|333026104|ref|ZP_08454168.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|302429043|gb|EFL00859.1| DNA-binding protein [Streptomyces sp. SPB78] gi|332745956|gb|EGJ76397.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 120 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + LA L L Sbjct: 9 LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67 >gi|291518909|emb|CBK74130.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 104 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +N R +TQ ++ +IS +E G++ +++ +I + + L +L+ Sbjct: 5 YGEQIKNYRINLGMTQNQVAKELDVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELV 64 >gi|312195167|ref|YP_004015228.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311226503|gb|ADP79358.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 404 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLW 78 M R+ LTQ + G ++ W+S++E G+ I +D + +A L L Sbjct: 1 MTIGERIAFYRRRRGLTQAVLAGLVGRSEDWLSKVERGEREIRRVDLLAEVAKALRVTLG 60 Query: 79 KLL 81 LL Sbjct: 61 DLL 63 >gi|228936982|ref|ZP_04099724.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822697|gb|EEM68587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 114 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E ++ ++S IS LET + ++D++ +A D + L+ Sbjct: 4 FGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLM 63 >gi|226303576|ref|YP_002763534.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226182691|dbj|BAH30795.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 308 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R+ + L+ +E+ R + + +S +ETGK+ +++D + + L L Sbjct: 25 LIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDAL 84 Query: 81 L 81 L Sbjct: 85 L 85 >gi|218290714|ref|ZP_03494796.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239252|gb|EED06451.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 72 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R E LTQ+E+ R G + +++E GK TI+++ ++ + P + + Sbjct: 6 LAKWRIEHGLTQEEMAARCGLKRVTYAKVEYGK-TISVETAQKISRVVGVPWPQFFE 61 >gi|167578195|ref|ZP_02371069.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167819326|ref|ZP_02451006.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167849172|ref|ZP_02474680.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167897769|ref|ZP_02485171.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167906116|ref|ZP_02493321.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|257142894|ref|ZP_05591156.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 69 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 24/38 (63%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R +R+ A LTQ ++ R QS++S++E G+ ++I Sbjct: 6 LRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 43 >gi|197119160|ref|YP_002139587.1| XRE family helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197088520|gb|ACH39791.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter bemidjiensis Bem] Length = 99 Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTL 73 L E F++ F R A +TQ EI R G QS ++ LE GK + +I + AH L Sbjct: 24 LNEEFHFLDQFLKARAAAGVTQAEIAERIGTTQSAVARLESGRGKHSPSIATLEKYAHAL 83 Query: 74 D 74 Sbjct: 84 G 84 >gi|270262720|ref|ZP_06190991.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043404|gb|EFA16497.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IR + L+Q+ + +G S IS +E K + I + L L Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63 >gi|238025512|ref|YP_002909744.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237880177|gb|ACR32509.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 193 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E + G ++ ++S++E G ++ +I ++ +A L Sbjct: 17 LGSKIRALRQRLKRTLDETASAAGISKPFLSQVERGLASPSITSLAGIAQALGV 70 >gi|229014716|ref|ZP_04171824.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|228746581|gb|EEL96476.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ ++ N + R E K++Q E+ G ++ IS +ETG+ ++L LD Sbjct: 1 MKDELVLQNRLKVARAEKKISQGELAEMVGVSRQTISSIETGQFCPTAKLALVLCIALDK 60 Query: 76 PLWKLL 81 +L Sbjct: 61 KFEELF 66 >gi|254387045|ref|ZP_05002322.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194345867|gb|EDX26833.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 223 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ T ++ TG + S +S LE+G+ ++ ++ LA L +L+ Sbjct: 17 VGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQRRPTLELLLPLAKAHRVALDELV 76 >gi|121582580|ref|YP_974109.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42] gi|120608636|gb|ABM44374.1| helix-turn-helix domain protein [Acidovorax sp. JS42] Length = 120 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|152985673|ref|YP_001350449.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960831|gb|ABR82856.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 187 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ AK T ++ + +G S++S+ E + ++I ++ +A +L+ PL L Sbjct: 7 GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65 >gi|15964050|ref|NP_384403.1| hypothetical protein SMc00377 [Sinorhizobium meliloti 1021] gi|15073226|emb|CAC41734.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 263 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + + R +++Q ++ G + +S LETG+ST + ++ LA LD P + Sbjct: 3 FGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSTPSEGMILRLASVLDVPARE 60 >gi|194336961|ref|YP_002018755.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194309438|gb|ACF44138.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 104 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R+R E L + + + R+E LTQ+ + G +S IS +E+ S + Sbjct: 20 PERERFEYEL------QMDLIGQAIKQTRQERNLTQEALGKLIGVQKSQISRIESNASNV 73 Query: 62 NIDNMIILAHTLD 74 ID ++ + + L Sbjct: 74 TIDTLMRVFNALQ 86 >gi|332704615|ref|ZP_08424703.1| helix-turn-helix domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554764|gb|EGJ51808.1| helix-turn-helix domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 110 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 6 RDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 R + R +F + R R +LTQ + R G +S ISE+E GK Sbjct: 30 RAIEEAVQPNVPAREVFPESTPGSVLRGARGLRELTQAGLAARIGVLKSHISEMERGKRP 89 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I D L LD P L Sbjct: 90 IGKDMARRLGQALDFPYRAFL 110 >gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 63 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N +RK+ LTQ ++ + ++ +E K + L+ L+T + KL P Sbjct: 3 NKIEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAFSLSKILNTEVDKLFTP 62 >gi|326943047|gb|AEA18943.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 63 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 2 NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|325522655|gb|EGD01175.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 193 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + P +DA + R +R+ K T E G ++ ++S++E G ++ ++ Sbjct: 4 PTENPRSADAA----AALGSKIRALRQRLKRTLDETATVAGISKPFLSQVERGLASPSLT 59 Query: 65 NMIILAHTLDT 75 ++ +A L Sbjct: 60 SLAGIAQALGV 70 >gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ N + R K++Q ++ R G + IS+ ETG++ + ++I LA + L Sbjct: 5 KIQLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWETGENYPDFMSLISLAQLFEVSLD 64 Query: 79 KLL 81 L+ Sbjct: 65 ILV 67 >gi|306843020|ref|ZP_07475647.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306286812|gb|EFM58353.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|290959624|ref|YP_003490806.1| chitinase-promoter-binding protein [Streptomyces scabiei 87.22] gi|260649150|emb|CBG72264.1| putative chitinase-promoter-binding protein [Streptomyces scabiei 87.22] Length = 289 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + Sbjct: 9 VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68 >gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] Length = 145 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK KL+Q ++ +R GF++ ++ E G+ + D + +A + L Sbjct: 1 MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|239815077|ref|YP_002943987.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801654|gb|ACS18721.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 102 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R E + Q+ + + G +S + ++E G+ + ++ +A L +L+ Sbjct: 25 FGAVVRALRTEDGIAQETLAHLAGIERSHMGKIERGEHMPTLVLVLRIARALGRSAGELM 84 >gi|213019727|ref|ZP_03335532.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994768|gb|EEB55411.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 303 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + TQK++ ++ G I E E G + I D + +A L + LL Sbjct: 170 GQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228 Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQ E+ ++ G A ++ E G I I+ + ++A L + LL Sbjct: 16 GQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLYVIARVLSVNVVDLL 74 >gi|163814918|ref|ZP_02206306.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] gi|158449857|gb|EDP26852.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] Length = 159 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M F +R + L+Q+E+ ++ IS+ E K+ + ++ ++ D L Sbjct: 12 EGMTFGERLYELRNKNNLSQEELAEVLDVSRQSISKWENDKAYPEMTRLLFMSDYFDVSL 71 Query: 78 WKLLK 82 L++ Sbjct: 72 DYLMR 76 >gi|126463028|ref|YP_001044142.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126104692|gb|ABN77370.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] Length = 201 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R LTQ + G + ++E+ETG+ +I + LA L L L Sbjct: 145 LRVYRDLHGLTQAVLAETAGVNRVTVAEIETGRKQGSIATLRALAGALGVTLDDL 199 >gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 74 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ L+Q ++ + G A+ I+ +E K +++ I LA L+T L L Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLF 59 >gi|72163177|ref|YP_290834.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71916909|gb|AAZ56811.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 401 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPL 77 + R+ L+Q+E +++W+S++E G ++ + + +A LD P+ Sbjct: 6 QKALGRKIAQYRRRRGLSQREFAALINRSEAWVSQVERGVRKVDRMSVLAAVAEVLDVPV 65 Query: 78 WKL 80 +L Sbjct: 66 AEL 68 >gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ + TQ+E+ + ++S IS+ E G ++ ++ L D LL Sbjct: 4 LGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFDVSADFLL 63 >gi|329117349|ref|ZP_08246066.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907754|gb|EGE54668.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RKE K++Q ++ + G + I LE G+ +++ L+ + + Sbjct: 3 NNLQELRKEGKISQSDLAEQVGVTRQTIISLEKGRYNASLELAFKLSKYFHVGIEDIF 60 >gi|303229090|ref|ZP_07315894.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302516243|gb|EFL58181.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 216 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R RK L+Q EI R G+ + + I + ETG + + + LA L + LLK Sbjct: 6 NIRYFRKLRNLSQDEIAKRLGYKSFTTIQKWETGMAEPPVGKLYELADILHVSIMDLLK 64 >gi|300088601|ref|YP_003759123.1| XRE family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528334|gb|ADJ26802.1| transcriptional regulator, XRE family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 82 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R+ + +TQ+E+ +R G Q ISE E +++ + + +A+ L + ++P Sbjct: 13 KRLSEYRRLSGITQQELASRIGTKQPVISEFERMMNSLTLGFIERVANALGVEIKIRIQP 72 >gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus GG] gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 176 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK + L+Q E+ G ++ IS+ E + ++ + L L Sbjct: 1 MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|269798478|ref|YP_003312378.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095107|gb|ACZ25098.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 153 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + L+ L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ R G +++ I ++E G+S+ + L+ L + L+ Sbjct: 13 GERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALGLSMSTLI 71 >gi|254359387|ref|ZP_04975659.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|148028574|gb|EDK86534.1| DNA-binding protein [Burkholderia mallei 2002721280] Length = 201 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 25 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 78 >gi|145295867|ref|YP_001138688.1| hypothetical protein cgR_1792 [Corynebacterium glutamicum R] gi|140845787|dbj|BAF54786.1| hypothetical protein [Corynebacterium glutamicum R] Length = 107 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R+ R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80 Query: 74 DTPLWKLL 81 T + +L Sbjct: 81 GTSVADVL 88 >gi|60594530|pdb|1Y9Q|A Chain A, Crystal Structure Of Hth_3 Family Transcriptional Regulator From Vibrio Cholerae Length = 192 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N +N+RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 9 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIASGLE 64 >gi|120599870|ref|YP_964444.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|146292194|ref|YP_001182618.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120559963|gb|ABM25890.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. W3-18-1] gi|145563884|gb|ABP74819.1| transcriptional regulator, XRE family with cupin sensor [Shewanella putrefaciens CN-32] Length = 182 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + + L Sbjct: 4 GASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62 >gi|107025820|ref|YP_623331.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692996|ref|YP_838529.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895194|gb|ABF78358.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116650996|gb|ABK11636.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T ++ R G + ++S++E G S + ++ + L P Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64 >gi|331086036|ref|ZP_08335119.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406959|gb|EGG86464.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 72 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE ++Q+E+ IS+ E G S +I +I L+ L L+ LL Sbjct: 10 IARKRKERNMSQRELAEYLHITDKAISKWERGLSFPDITILIPLSEILGVSLYDLLT 66 >gi|313894435|ref|ZP_07828000.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441259|gb|EFR59686.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 27/45 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R++ +TQ ++ +++G AQS+IS+LE+G + + + L Sbjct: 27 RRQLGMTQYQLADKSGLAQSYISDLESGAIDPRWSTIYRVVNGLG 71 >gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 200 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R LT +++ N TGF+++ IS++E T I + +A L+ + + Sbjct: 9 GERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVTPPITTLAKIAKVLNVKMVYFFE 68 >gi|298385377|ref|ZP_06994935.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298261518|gb|EFI04384.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 103 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 8 EPHLSD-AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 PH + + + RK +TQ+E+ + G ++ +S++E+G + + + Sbjct: 22 TPHRDKYEAELQSFLIGEAIKKARKSQNMTQEELAQKIGVQRAQVSKIESG-RNLTLSTV 80 Query: 67 IILAHTLDTP 76 + + Sbjct: 81 ARVFRAMGME 90 >gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] Length = 194 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK T E+ R+G +Q+ IS++E G S+ + + LA ++ L Sbjct: 15 ARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTSSPSATILSRLASAMNITL 69 >gi|326203817|ref|ZP_08193679.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985915|gb|EGD46749.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 NN + +R+ L Q+++ G ++++S+LE K + M + L Sbjct: 7 NNIQKLRESRGLNQEDLAEVLGVTRTYLSKLENQKFSPGPGLMQKVCSFFGKEL 60 >gi|227512465|ref|ZP_03942514.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC 11577] gi|227084290|gb|EEI19602.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC 11577] Length = 103 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +RK +T E+ + GF+QS+I+ ET ++ N++ + + L T Sbjct: 7 GEKLRKLRKSRGMTAAELSAKMGFSQSYINHFETDRAVPNVNALGKILKYLGT 59 >gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] Length = 377 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +R + +TQ+++ + G ++ +S+ ET + +I+ + +LA + + + Sbjct: 1 MTLGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAIPDIEKLKLLAEIFEVSITE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length = 474 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R+E LTQ + G + S++++LE + I + ++ L D P Sbjct: 7 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLP 60 >gi|332967905|gb|EGK06997.1| XRE family transcriptional regulator [Kingella kingae ATCC 23330] Length = 89 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLD 74 + IF F+ RK K+TQ+++ G A + I+ E G +++ ++ +A LD Sbjct: 5 QQIFTKRFKEARKAKKMTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLVWIAQILD 64 Query: 75 TPL 77 P Sbjct: 65 VPP 67 >gi|325527860|gb|EGD05122.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK K+T ++ R G + ++S++E G S + ++ + L P Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64 >gi|321272347|gb|ADW80228.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 306 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQK++ N+ G I E E G+S ++++ + +A L + LL Sbjct: 163 VGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISIIDLL 222 Score = 41.5 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R E TQK++ + G I E G I I + +A L + L+ Sbjct: 13 VGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEALSVNVKGLV 72 >gi|307324538|ref|ZP_07603745.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889782|gb|EFN20761.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 410 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 + +R LTQ+++ +R G + I LE G + I LA LD L Sbjct: 4 LSVGKRLARLRDIRDLTQEQLADRAGVSVDTIRRLEQGTQRGARIATYQKLAGALDIELA 63 Query: 79 KLL 81 +LL Sbjct: 64 RLL 66 >gi|295106127|emb|CBL03670.1| looped-hinge helix DNA binding domain, AbrB family [Gordonibacter pamelaeae 7-10-1-b] Length = 140 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N ++ R+ LTQ+++ A+ +++ E G S ++ N LA LD L L Sbjct: 1 MIGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDAL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|284042857|ref|YP_003393197.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947078|gb|ADB49822.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R +R L+Q+ + +R G ++++ +E G+ + LA+ LD P Sbjct: 12 PEFVALGRAAREVRARRDLSQEVLGSRGGLHRNYVGAIERGEINPTFRVLSKLAYGLDVP 71 Query: 77 LWKLL 81 L +L Sbjct: 72 LSELF 76 >gi|262199036|ref|YP_003270245.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082383|gb|ACY18352.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 133 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK +LTQ++ R G + + + +E G + ++ +A L LL Sbjct: 14 REARKALELTQEDAAERIGVSAEFYARIERGNALPSVPTFTRIAMALGVSADTLL 68 >gi|163736370|ref|ZP_02143789.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] gi|163741095|ref|ZP_02148487.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385448|gb|EDQ09825.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161390240|gb|EDQ14590.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] Length = 207 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +A E + R +RK T + N+ G A+S +S++E G+ + + + LA Sbjct: 16 SGEAAETEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLA 75 Query: 71 HTLDTPLWKLLK 82 L + +L Sbjct: 76 VGLQISVPQLFT 87 >gi|154496456|ref|ZP_02035152.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] gi|150274539|gb|EDN01616.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L Q+E+ G ++ IS +E G +I + +A T + ++ Sbjct: 5 NRLKELRAAKGLNQQELGALVGASRQTISLIERGDYNPSITLALRIAKVFGTTVEQVF 62 >gi|38707970|ref|NP_945111.1| gp80 [Burkholderia phage phi1026b] gi|38505462|gb|AAR23231.1| gp80 [Burkholderia phage phi1026b] Length = 128 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++ Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 122 >gi|331089117|ref|ZP_08338021.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406017|gb|EGG85541.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RKE KL+Q +I R +S++E GK+T ++ L+ L+ Sbjct: 9 GERIKTRRKELKLSQTDIYERCDITSGALSKIENGKTTPSVIAFYKLSQVLE 60 >gi|318062191|ref|ZP_07980912.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318081002|ref|ZP_07988334.1| regulatory protein [Streptomyces sp. SA3_actF] Length = 284 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ N R +R++ +T + + G+ +S IS +E GK+ ++ ++ Sbjct: 10 ARIALGNRLRALRRQQGITARALAADCGWHESKISRVENGKALPSVQDLTKWTEACGAAP 69 >gi|310830880|ref|YP_003965981.1| hypothetical protein PPSC2_p0524 [Paenibacillus polymyxa SC2] gi|309250347|gb|ADO59913.1| hypothetical protein PPSC2_p0524 [Paenibacillus polymyxa SC2] Length = 90 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 E + F RK T E+ TG +S+I LE G+ + + LA L Sbjct: 23 EMIAFGKWVSEKRKNEGKTLDELAKITGIDKSYIHRLEKGERTNPSFITVYSLATALGKD 82 Query: 77 LWKLLK 82 + +++K Sbjct: 83 IREIIK 88 >gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 183 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R L+Q+ + R G S IS +E+G++ ++ ++ + L + Sbjct: 2 DQLDIGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRANPSVGSLKRILDGLPIGM 61 Query: 78 WKLL 81 + Sbjct: 62 AEFF 65 >gi|260892321|ref|YP_003238418.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864462|gb|ACX51568.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 144 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R L+ KE+ R G + +++ +LE GK + +LA + P +L P Sbjct: 76 KLQALRLSYGLSLKELSRRVGVSATFLGQLERGKKRASPATRELLAQHFNVPEHELFDP 134 >gi|260460417|ref|ZP_05808669.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034062|gb|EEW35321.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RK+ +T ++ T + +S++E G ++ ++ + L+ L P+ + Sbjct: 54 GREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFR 113 >gi|257870000|ref|ZP_05649653.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804164|gb|EEV32986.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 112 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R E KLTQ+E+ ++ G + + E+GK + + +LA L Sbjct: 1 MFPQIIKKLRLEKKLTQQEVADKIGITRPAYTAYESGKREPDFSMLQVLADLFGVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US] gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US] Length = 112 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +N R TQK++ + +S E G++ +ID + LA LD L Sbjct: 3 LAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNEPSIDTLKKLATKLDVSFDYL 61 >gi|302519920|ref|ZP_07272262.1| DNA-binding protein [Streptomyces sp. SPB78] gi|318056959|ref|ZP_07975682.1| DNA-binding protein [Streptomyces sp. SA3_actG] gi|302428815|gb|EFL00631.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 291 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|259909005|ref|YP_002649361.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224964627|emb|CAX56141.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283479016|emb|CAY74932.1| putative DNA-binding protein [Erwinia pyrifoliae DSM 12163] Length = 187 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E + + + TG +++ +S +E +++ + L + + +LL Sbjct: 10 LARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTMSRLL 69 >gi|333026335|ref|ZP_08454399.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332746187|gb|EGJ76628.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 291 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|328956479|ref|YP_004373865.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] gi|328672803|gb|AEB28849.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ ++ R + +Q ++ ++ IS+ E S ++DN++ L+ Sbjct: 1 MLLGEKLKSSRVKKGFSQNDVAEELHISRQSISKWENDISYPDLDNLVKLSTYYQVSTDH 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|291550061|emb|CBL26323.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RN+R++ TQKE+ Q+ S+ E GK + ID I LA + L+ Sbjct: 3 FENIRNLREDNDKTQKEVAAYLNIKQTTYSKYELGKINVPIDVFIKLADYYTVSIDYLV 61 >gi|262191222|ref|ZP_06049420.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] gi|262032888|gb|EEY51428.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] Length = 181 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N +N+RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|255655369|ref|ZP_05400778.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 118 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +RKE LTQ+E+ + G +Q + ET + + LA D + L Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|239817524|ref|YP_002946434.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804101|gb|ACS21168.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 173 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 A+++ E+ +G + S +S +E G + +++ + LA+ L P + Sbjct: 2 AAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPTSRFF 51 >gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 113 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ N R R+ +TQK++ + G + IS E G ++I+I ++ + + L+ L Sbjct: 5 KLRVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLD 64 Query: 79 KL 80 + Sbjct: 65 DI 66 >gi|190574387|ref|YP_001972232.1| putative transcriptional repressor protein [Stenotrophomonas maltophilia K279a] gi|190012309|emb|CAQ45935.1| putative transcriptional repressor protein [Stenotrophomonas maltophilia K279a] Length = 108 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 F + R L+QKE+ R G A I++ E GK ++ LA L P Sbjct: 11 FARRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPMLEIAERLAQALGIP 69 >gi|153826821|ref|ZP_01979488.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|149739342|gb|EDM53588.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] Length = 181 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N +N+RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|254252819|ref|ZP_04946137.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] gi|124895428|gb|EAY69308.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] Length = 232 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++ P DA + ER+ R++R T + R+G ++S IS +E ++ Sbjct: 27 QEETTPPGGDASINERI--ARRVRDLRATRGYTLDALAARSGVSRSMISLVERASASPTA 84 Query: 64 DNMIILAHTLDTPLWKLL 81 + LA L L L Sbjct: 85 VVLDKLAAGLGVSLAALF 102 >gi|50843643|ref|YP_056870.1| putative transcriptional regulator [Propionibacterium acnes KPA171202] gi|50841245|gb|AAT83912.1| putative transcriptional regulator [Propionibacterium acnes KPA171202] Length = 288 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + + + R + T ++ + G ++ + +E G Sbjct: 85 LPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + ++ L+ L L L++P Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167 >gi|134295176|ref|YP_001118911.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138333|gb|ABO54076.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 221 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 DA + ER+ R++R T + R+G ++S IS +E ++ + LA Sbjct: 10 PDAGINERI--ARRVRDLRTLRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAA 67 Query: 72 TLDTPLWKLL 81 L L L Sbjct: 68 GLGVSLAALF 77 >gi|15641970|ref|NP_231602.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590656|ref|ZP_01677990.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121728635|ref|ZP_01681654.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|147674892|ref|YP_001217496.1| transcriptional regulator [Vibrio cholerae O395] gi|153217017|ref|ZP_01950781.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|153801860|ref|ZP_01956446.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|153819310|ref|ZP_01971977.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|153822466|ref|ZP_01975133.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|227082095|ref|YP_002810646.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|229507941|ref|ZP_04397446.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229511823|ref|ZP_04401302.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229515349|ref|ZP_04404809.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229518960|ref|ZP_04408403.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229607486|ref|YP_002878134.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254849056|ref|ZP_05238406.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745280|ref|ZP_05419229.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262156005|ref|ZP_06029125.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|262167921|ref|ZP_06035621.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|298497998|ref|ZP_07007805.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9656508|gb|AAF95116.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547499|gb|EAX57605.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121629098|gb|EAX61543.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|124113941|gb|EAY32761.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124122632|gb|EAY41375.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|126510130|gb|EAZ72724.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|126520042|gb|EAZ77265.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|146316775|gb|ABQ21314.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|227009983|gb|ACP06195.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|227013865|gb|ACP10075.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|229343649|gb|EEO08624.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229348054|gb|EEO13013.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229351788|gb|EEO16729.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229355446|gb|EEO20367.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229370141|gb|ACQ60564.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254844761|gb|EET23175.1| transcriptional regulator [Vibrio cholerae MO10] gi|255737110|gb|EET92506.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262023648|gb|EEY42349.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|262030183|gb|EEY48827.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|297542331|gb|EFH78381.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 181 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N +N+RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|271966668|ref|YP_003340864.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509843|gb|ACZ88121.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 201 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ T ++ TG + S +S LE+G ++ ++ LA L +L+ Sbjct: 12 VGPRLRTLRRQRDTTLADLSATTGISVSTLSRLESGARRPTLELLLPLARAHGVTLDELV 71 >gi|320007231|gb|ADW02081.1| Cupin 2 conserved barrel domain protein [Streptomyces flavogriseus ATCC 33331] Length = 194 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R A L+ E+ R ++ + LE + N ++ LA TL + LL Sbjct: 11 LARNVRAARTRAGLSLDELGRRAKVSKGALVGLEKAQGNPNFATLVRLADTLGISVSALL 70 Query: 82 K 82 + Sbjct: 71 E 71 >gi|257464929|ref|ZP_05629300.1| transcriptional regulator/helix-turn-helix domain-containing protein [Actinobacillus minor 202] gi|257450589|gb|EEV24632.1| transcriptional regulator/helix-turn-helix domain-containing protein [Actinobacillus minor 202] Length = 129 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R+ + +Q+++ + + + + +E G++ +++D + +A LD + L+ P Sbjct: 5 EKIKKLREAKEWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDIVNLISP 64 >gi|326204877|ref|ZP_08194730.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984926|gb|EGD45769.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 108 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ R+ LT++ + +++ ++E G+ ++++ + ++ L L L+K Sbjct: 7 GKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVSLDYLIK 66 >gi|256847858|ref|ZP_05553303.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715547|gb|EEU30523.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 189 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R L+Q+++ + I LE G+ +I+ + ++A L + L Sbjct: 22 MVNTQIKELRVAKGLSQEQLAEAAKVSVRTIQRLEAGQ-DGSIETLNLVAGALGVSVRDL 80 Query: 81 LK 82 + Sbjct: 81 FE 82 >gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 145 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ KL+Q E+ +R GF++ ++ E G+ + D + +A + L Sbjct: 1 MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225017776|ref|ZP_03706968.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum DSM 5476] gi|224949427|gb|EEG30636.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum DSM 5476] Length = 106 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ +R + LTQ E+ G ++ + +E GK + + + +LA P+ L Sbjct: 2 RFKELRNKRDLTQLEVAEYLGITRAAYTNIENGKREADYNTLTMLARLYKVPIGDLF 58 >gi|209546022|ref|YP_002277912.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538879|gb|ACI58812.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L P+ Sbjct: 38 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPMTA 97 Query: 80 LLK 82 + Sbjct: 98 FFR 100 >gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] Length = 94 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK ++QKE+ N G + + + +E+G + + + + + L P LL Sbjct: 4 GNAIKLLRKRKDISQKELSNLCGISANALCSIESGGTFPSKSTIAKICNALKIPESYLL 62 >gi|83941659|ref|ZP_00954121.1| DNA binding protein, putative [Sulfitobacter sp. EE-36] gi|83847479|gb|EAP85354.1| DNA binding protein, putative [Sulfitobacter sp. EE-36] Length = 173 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R L+ + +G ++S +S++E G+S+ I + L L LL Sbjct: 1 MKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 56 >gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 123 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R+E L QKE+ G ++ +S E GK + + LA+ L+ Sbjct: 2 KTIGEKIQILREERNLKQKELAELAGITEATLSRYENGKREPKGEIISKLANVLNVSTDY 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina NCIMB 400] gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor [Shewanella frigidimarina NCIMB 400] Length = 182 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + + L Sbjct: 4 GTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVDFF 62 >gi|297171001|gb|ADI22016.1| predicted transcriptional regulators [uncultured myxobacterium HF0200_01L06] Length = 265 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R + LTQ ++ +R+G + +S +ETG++ + ++ LA L+ P Sbjct: 6 GELLRYWRDKRGLTQFDLADRSGISCRHLSFVETGRAGPSRQTILTLARVLEIP 59 >gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 362 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + LTQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|317508397|ref|ZP_07966068.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC BAA-974] gi|316253305|gb|EFV12704.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC BAA-974] Length = 86 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R T E+ +G ++S I +E GKS N++ M L+ L L +L Sbjct: 10 LIAEELKALRSRRGFTLDELELASGVSRSTIWRIENGKSDPNVEQMTRLSRALGLDLPRL 69 Query: 81 LK 82 ++ Sbjct: 70 VQ 71 >gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] Length = 356 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + LTQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|312139364|ref|YP_004006700.1| transcriptional regulator [Rhodococcus equi 103S] gi|325672755|ref|ZP_08152451.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311888703|emb|CBH48015.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325556632|gb|EGD26298.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 120 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R R T +E+ N + ++SE+E G+ + + + + L+ PL Sbjct: 6 REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEIERGRKEASSELLAAICDALEVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 EVL 68 >gi|295133936|ref|YP_003584612.1| prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] gi|294981951|gb|ADF52416.1| putative prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] Length = 251 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R IR KL+Q+ + + E +S I+ +I +A+ + LL Sbjct: 4 FGKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSEPRIETIIKIANHFSITIDDLL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 356 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + LTQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|289640850|ref|ZP_06473021.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509426|gb|EFD30354.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 79 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R A L+Q+E+ R G Q +I ELE GK +I +D + L Sbjct: 11 ESLGRILQQARLLAGLSQRELARRLGTTQKYIWELEAGKPSIVMDRLFAAMRETGMELST 70 Query: 80 LLKP 83 + P Sbjct: 71 TITP 74 >gi|258507369|ref|YP_003170120.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257147296|emb|CAR86269.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259648728|dbj|BAI40890.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 100 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ A L+Q+E+ N++G ++ I+ +E G + +I+ + +A+ L Sbjct: 47 EARQNAGLSQQELANKSGVPKTTIARIEQG-NNTSIETLTKIANALGKQ 94 >gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461228|gb|EFL24321.1| PbsX family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 133 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + LA L L Sbjct: 13 LREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67 >gi|253576963|ref|ZP_04854287.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843694|gb|EES71718.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 115 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK +L QKE + G +Q +S++E G + + +I L +T L LL Sbjct: 3 LGEKVRTIRKSHELNQKEFALKIGVSQGTLSDIERGVCLPSCETIIALKNTFQCDLNWLL 62 >gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 362 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + LTQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 356 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + LTQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|163858880|ref|YP_001633178.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163262608|emb|CAP44911.1| predicted transcriptional regulator [Bordetella petrii] Length = 99 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ + +R L+Q+ + + +++++S LE G + + L + Sbjct: 3 EQYDIGQAIKTVRTLRGLSQEAFSDVS--SRTYLSTLERGLKNPTLSKLAELCEVMQIHP 60 Query: 78 WKLL 81 L+ Sbjct: 61 LTLM 64 >gi|56476841|ref|YP_158430.1| hypothetical protein ebA2491 [Aromatoleum aromaticum EbN1] gi|56312884|emb|CAI07529.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 140 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R ++Q+ + + G +S + ++E G+ + ++ +A L L+ Sbjct: 67 FGAAVREERMNQAISQEALAHLAGIERSHMGKIERGEHVPTLPLILKIARALKCSSAHLM 126 >gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 136 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+++ +++ G + ++S++E G + + + +A L L Sbjct: 21 IRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVL 75 >gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium longum DJO10A] gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum DJO10A] gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum DJO10A] Length = 362 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + LTQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|107027629|ref|YP_625140.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693658|ref|YP_839191.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105897003|gb|ABF80167.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116651658|gb|ABK12298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 81 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R ++Q+ + + +S + ++E G+ + + N++ ++ L + Sbjct: 15 KQIGRSIRARRLALNISQESLAHLANIDRSHMGKIERGERNVTLLNLLRISRALAWQPSE 74 Query: 80 LL 81 LL Sbjct: 75 LL 76 >gi|331701987|ref|YP_004398946.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129330|gb|AEB73883.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 196 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+ R+ +Q+E+ ++ ++ IS ETGK +I N+++L+ + +L+K Sbjct: 4 GNKIRDYREVRGFSQEELASKIYVSRQTISNWETGKQYPDIQNVLLLSVLFGVSVDELIK 63 >gi|284028971|ref|YP_003378902.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808264|gb|ADB30103.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ A+L+ +++ + G + ++S++E G + D + LA L L Sbjct: 15 VGEYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQLAKALRISAETL 73 >gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp. avium ATCC 25291] Length = 477 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R +R+E LTQ + G + S++++LE + I + ++ L D Sbjct: 2 VRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFD 61 Query: 75 TP 76 P Sbjct: 62 LP 63 >gi|302875482|ref|YP_003844115.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689097|ref|ZP_07631543.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578339|gb|ADL52351.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 132 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 25/53 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R A L+ + + + ++S + ++E GK+ ++ + +A L+ Sbjct: 4 GEKIKQYRNLAGLSIRVLAAKADISKSTLGDIENGKTNTSVKTITSIAEALNV 56 >gi|238061301|ref|ZP_04606010.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883112|gb|EEP71940.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 481 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 28/51 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++R+ AK++ +++ + G + ++S++E G + + + LA L Sbjct: 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64 >gi|227504853|ref|ZP_03934902.1| transcriptional regulator ClgR [Corynebacterium striatum ATCC 6940] gi|227198544|gb|EEI78592.1| transcriptional regulator ClgR [Corynebacterium striatum ATCC 6940] Length = 124 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + +L R R R + +T +E+ + ++SELE G+ Sbjct: 20 VPGAVETPKRAPEPLL--REALGLTLRAFRADKGVTLRELAGVARVSPGYLSELERGRKE 77 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + + + H L+ + +L Sbjct: 78 VSSELLASVCHALEVSVADVL 98 >gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] Length = 509 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ +Q ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|149276668|ref|ZP_01882811.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] gi|149232337|gb|EDM37713.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39] Length = 105 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 17 RER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ER I +N R IR+ TQ+ I + +Q+ S+LE G S I+ID + +A L+ Sbjct: 15 PERRPKIVADNIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAELLE 74 Query: 75 TPLWKLL 81 +L+ Sbjct: 75 VDAGELV 81 >gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|29374945|ref|NP_814098.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|257088816|ref|ZP_05583177.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|281416438|ref|YP_003347358.1| cI repressor protein [Enterococcus phage phiFL4A] gi|29342403|gb|AAO80169.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256997628|gb|EEU84148.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|270209614|gb|ACZ64153.1| cI repressor protein [Enterococcus phage phiFL4A] gi|315160614|gb|EFU04631.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0645] gi|315579460|gb|EFU91651.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 120 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 F + +RK K++Q+E+ G + IS E G + ++ D + ++ D + L Sbjct: 4 FALRLKELRKNKKMSQQELATFLGMKRENISNYERGVITNVSSDTLEKISELFDVSIDYL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|323142495|ref|ZP_08077315.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413072|gb|EFY03971.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 97 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 E + R +R LTQ + G +Q+ + +E G+ + + N++ L L+ Sbjct: 2 QEEIKLIGRRIRLLRTAKNLTQTGLAKEMGISQTHLCNIECGRVPVTLPNLLKLHSLLE 60 >gi|319646699|ref|ZP_08000928.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] gi|317391287|gb|EFV72085.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] Length = 183 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + +RK + ++ + TG ++ ++++E G S+ I + +A+ L Sbjct: 6 KQVAENIKRLRKVRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTS 65 Query: 80 L 80 L Sbjct: 66 L 66 >gi|309774559|ref|ZP_07669585.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917674|gb|EFP63388.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 400 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F +RK+ TQ ++ + +S ET + +I + L+ L Sbjct: 3 KEQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGVSCD 62 Query: 79 KLL 81 +LL Sbjct: 63 ELL 65 >gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 166 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +N RKE LTQ+ + ++ +S+ E S ++DN+I L+ Sbjct: 1 MIGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGV 55 >gi|229827273|ref|ZP_04453342.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] gi|229788891|gb|EEP25005.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] Length = 115 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 R++R E+KLTQ ++ QS I+++E G+ I D + L+ Sbjct: 10 GKRIRSLRYESKLTQTKLSEYLSLDQSMIAKIEKGERNITSDVIEKLS 57 >gi|225019956|ref|ZP_03709148.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] gi|224947320|gb|EEG28529.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] Length = 122 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +N+R +A L QKE+ ++S IS E K+ ++ +I LA + LL Sbjct: 3 FGDKIKNLRTDADLKQKEVAEILKVSRSSISSYEQNKNQPDLHAVIELAKLFNVSTDYLL 62 >gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R + LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|251794117|ref|YP_003008848.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247541743|gb|ACS98761.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E R RK TQ+E+ G + + + LE G + M+ +A+TL Sbjct: 2 ENHQLAQRVRAFRKLKGYTQQELAKVLGVSVAVLGSLERGTRKPDARLMMNIANTLGISY 61 Query: 78 WKLL 81 +L+ Sbjct: 62 EELM 65 >gi|121594519|ref|YP_986415.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|124267592|ref|YP_001021596.1| hypothetical protein Mpe_A2406 [Methylibium petroleiphilum PM1] gi|330824415|ref|YP_004387718.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|120606599|gb|ABM42339.1| transcriptional regulator, XRE family [Acidovorax sp. JS42] gi|124260367|gb|ABM95361.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] gi|329309787|gb|AEB84202.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 99 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 1 MPRR--KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 MP+R +R P + E I F R R + Q+ + + G +S + ++E G Sbjct: 1 MPKRSIQRGRPTGTTTYEAEPAIAFGAAVREERTNQGIAQETLAHMAGIERSHMGKIERG 60 Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82 + + ++ +A L L+ Sbjct: 61 EHVPTLPLILKIARALKCSSAHLMT 85 >gi|328545047|ref|YP_004305156.1| XRE family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326414789|gb|ADZ71852.1| XRE family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 207 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + EP D +R I + + +R + + ++ +G +++ +S LE + + + Sbjct: 14 KDPLPEPSPLDPAQLDRQI-ADRLKALRLQRGWSLDDLARLSGVSRASLSRLENAEVSAS 72 Query: 63 IDNMIILAHTLDTPLWKLL 81 + L PL +L+ Sbjct: 73 AATLGRLCAAHGMPLSRLM 91 >gi|315640505|ref|ZP_07895613.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315483709|gb|EFU74197.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 139 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RKE ++TQ + + +S E GK +I N++ L+ D L +L+K Sbjct: 4 GEKIQLLRKEKQMTQNMVAEVLHVSTQAVSNWERGKGYPDIQNILQLSDLFDVSLDELIK 63 >gi|289522607|ref|ZP_06439461.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504443|gb|EFD25607.1| toxin-antitoxin system, antitoxin component, Xre family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 126 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL--ETGKSTINIDNMIILAHTLDTP 76 R+ F+ I + +TQKE+ +R G +++++S + + + ++ ++ L+ ++ Sbjct: 27 RLQFLEGISAIMESQGITQKELADRMGVSEAYLSRVFNDNVEKNFTLNTLVELSKAVNAE 86 Query: 77 LWKLLKP 83 + ++ P Sbjct: 87 IKIIVTP 93 >gi|262171043|ref|ZP_06038721.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] gi|261892119|gb|EEY38105.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] Length = 217 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + +RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 44 KSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 99 >gi|258621267|ref|ZP_05716301.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] gi|258586655|gb|EEW11370.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] Length = 211 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + +RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 38 KSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 93 >gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302477078|gb|EFL40171.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 110 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + + + + + ++ R IR+E LTQ ++ G +Q+ +S++E G+ Sbjct: 21 VPDAEWESRKQAARTATDAYVVGHHLREIREEQGLTQGQVAASVGISQARVSQIERGEIH 80 Query: 61 INIDNMIILAHTLD 74 N++ M A L Sbjct: 81 -NLETMRAYAEALG 93 >gi|229491001|ref|ZP_04384834.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322117|gb|EEN87905.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 194 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+++++T ++ T + S +S LE+G N++ ++ +A PL L+ Sbjct: 14 GPRLRALRQQSEMTLADLSEATDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 >gi|184160014|ref|YP_001840883.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211608|gb|ACC59005.1| Predicted transcriptional regulator [Acinetobacter baumannii ACICU] Length = 97 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 30/53 (56%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK +++Q E+ G + S++SE+E+GK ++ + + D P+ L+ Sbjct: 9 MRKYHRISQTELSQSLGISNSYLSEIESGKKKPTLELLDKYSEYFDIPVSSLM 61 >gi|307709978|ref|ZP_07646425.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619349|gb|EFN98478.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 114 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 23/49 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + +R + LTQ +I QS I+++E G+ I D + L+ Sbjct: 9 VGKRIKELRISSNLTQDKIAEYLSLNQSMIAKMEKGERNITSDVIEKLS 57 >gi|306844614|ref|ZP_07477201.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275058|gb|EFM56821.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] Length = 470 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R IR E LTQ + G + S+++ +E + + + ++ LA Sbjct: 1 MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 LDLDSL 66 >gi|284098554|ref|ZP_06385940.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283830492|gb|EFC34683.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 399 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S ++R++ N R +R A L+Q E+ G + + +E + + + LA Sbjct: 1 MSTPKPQQRVV--NRLREMRIAAGLSQGEVAESAGITRQALYAMEKDQYLPGTEVALHLA 58 Query: 71 HTLDTPLWKLL 81 L T + L Sbjct: 59 DALGTSVEDLF 69 >gi|302552821|ref|ZP_07305163.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302470439|gb|EFL33532.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 447 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R E LTQ+++ + ++IS LE+G+ + D + LA L +L Sbjct: 9 VIGRRVQRLRVERGLTQRQLAEPV-YTPAYISTLESGRVRPSDDALRHLAGRLGVAFDEL 67 >gi|229021393|ref|ZP_04178016.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|229023660|ref|ZP_04180152.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228737585|gb|EEL88089.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228739894|gb|EEL90268.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 120 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R +RKE K+TQK++ ++S I E + + D + +A+ Sbjct: 2 KTFGNILRELRKEKKITQKDLALTLKLSESTIGMYERNERQPDYDTLNRIANYFKVTTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 150 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +RK KLTQ ++ Q S E G +++ ++ LA DT LL Sbjct: 7 FGDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPSLEAVVKLAKLFDTTTDYLL 66 >gi|221068872|ref|ZP_03544977.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713895|gb|EED69263.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 131 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R+ A+ +Q+++ + +S IS+LE G ++ + L H L + Sbjct: 25 KALGTKLRSYRELAQKSQEQLAHEAEVERSRISKLENGHINPSLLTLATLCHCLGITPAE 84 Query: 80 LLK 82 L + Sbjct: 85 LFE 87 >gi|189465864|ref|ZP_03014649.1| hypothetical protein BACINT_02226 [Bacteroides intestinalis DSM 17393] gi|189434128|gb|EDV03113.1| hypothetical protein BACINT_02226 [Bacteroides intestinalis DSM 17393] Length = 85 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + KE TQKE + G ++++ GK + + +A L+ +W+LL Sbjct: 2 RIKEVIKEKGYTQKEFAEKLGMTTVGLAQIIAGK--PSYTTLEKIADALEVEIWELL 56 >gi|153811873|ref|ZP_01964541.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] gi|149832007|gb|EDM87092.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 IR++ KL+Q++ G + +S E G S NI+ +I+++ + + ++LK Sbjct: 12 AKTILKIRQDNKLSQEQFAEIVGVTRQAVSRWEMGISAPNINTLILMSEKFNIQVDEMLK 71 >gi|116054262|ref|YP_788706.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296387039|ref|ZP_06876538.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111831|ref|ZP_07797624.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa 39016] gi|115589483|gb|ABJ15498.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa UCBPP-PA14] gi|310884126|gb|EFQ42720.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa 39016] Length = 184 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +RK +T + + + + ++S++E G S +D+++ ++ L P Sbjct: 15 VRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVP 65 >gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 197 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E LTQ+++ + G +S+ E G +++ + L+ L TP+ LL Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTPVETLL 65 >gi|311897916|dbj|BAJ30324.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 285 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + +R R + R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L Sbjct: 6 NPTVRRRRL-GAELRRLRELKGMTAEEVAGRLMVSQSKISRLENGRRSISQRDVRDLCDV 64 Query: 73 LDTP 76 + Sbjct: 65 YEVE 68 >gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis BCW-1] Length = 509 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|266625408|ref|ZP_06118343.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288862688|gb|EFC94986.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R + ++TQ+++ TG + I LE GK ++ I ++ ++ P+ L Sbjct: 4 FTCNLKKYRLQKEMTQEQLAQITGVRRETIMRLEAGKYNPSLKLAIDISKAVEAPIEALF 63 >gi|228958063|ref|ZP_04119798.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296502381|ref|YP_003664081.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|228801580|gb|EEM48462.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323433|gb|ADH06361.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 404 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229043538|ref|ZP_04191247.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228725760|gb|EEL77008.1| Transcriptional regulator, Xre [Bacillus cereus AH676] Length = 404 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229144395|ref|ZP_04272800.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228639026|gb|EEK95451.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 404 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|228952164|ref|ZP_04114256.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229189879|ref|ZP_04316889.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228593553|gb|EEK51362.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228807518|gb|EEM54045.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 404 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 200 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R E +TQ ++ G + + E+G+S I D + +A+ L Sbjct: 6 EQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESRIFFDTVCSIANFLGVTPSY 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|188534357|ref|YP_001908154.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] gi|188029399|emb|CAO97276.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99] Length = 187 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D E+ + ++R+E + + + TG +++ +S +E +S+ + L + Sbjct: 2 DVNATEKRL-AQRLCDLRREKSWSLETLAELTGISRASLSRIERAESSPTATLLNRLCNA 60 Query: 73 LDTPLWKLL 81 + +LL Sbjct: 61 YGLTMSRLL 69 >gi|153932590|ref|YP_001385122.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937327|ref|YP_001388591.1| putative immunity repressor protein [Clostridium botulinum A str. Hall] gi|152928634|gb|ABS34134.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933241|gb|ABS38740.1| putative Immunity repressor protein [Clostridium botulinum A str. Hall] Length = 183 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L L + + +++ + TQK + + G ++S+I ++E G++ + + +A Sbjct: 2 LPKKDLGKLIKKAREYKSKKTYKLFTQKMLADEIGKSRSYICDIERGRTYPSFATLSAIA 61 Query: 71 HTLDTPL 77 D PL Sbjct: 62 RACDVPL 68 >gi|111116408|ref|YP_709292.1| putative DNA-binding protein [Pseudomonas putida] gi|111036212|dbj|BAF02402.1| putative DNA-binding protein [Pseudomonas putida] Length = 99 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R R ++ L Q+++ G ++ + ++E G+S + ++ L+ L+ L+ Sbjct: 25 FGNVVREERLKSGLAQEKLALLAGVERAHLGKIERGESLPTLPLIMRLSKALEVKAADLI 84 >gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 150 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ + + +R E LTQKE+ G ++I ++E G+ ++ ++ ++ L P Sbjct: 2 KLKIGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGEQLPSLKILLKISDALSVP 61 Query: 77 LWKLLK 82 + + Sbjct: 62 VASFFQ 67 >gi|154248612|ref|YP_001419570.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162697|gb|ABS69913.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 224 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IR+E LT ++ + +S++E G+ + ++ + ++ L+ P+ L Sbjct: 41 LGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISPSLATLQAISKALNVPITTLF 100 >gi|315035552|gb|EFT47484.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 401 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|304407872|ref|ZP_07389523.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304343355|gb|EFM09198.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 125 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-D 74 L+++ R +R L+ +++ ++G + S+IS +E G+ + + I LA L Sbjct: 4 LKDKNKLGQTIRLLRLTNNLSLRDLAEKSGISYSFISSVEKGRFAPSRETTIALAEALKG 63 Query: 75 TPLWKLL 81 L +LL Sbjct: 64 ADLNELL 70 >gi|296269505|ref|YP_003652137.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092292|gb|ADG88244.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 411 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTP 76 E + F + +R+ ++QKE+ G ++SW+S++E + + + LA+ L Sbjct: 5 EGLTFGARVKELRQRRGMSQKELAAEVGRSESWVSQVERDVQPVERLSVIQALANALGVS 64 Query: 77 LWKLLKP 83 ++L+P Sbjct: 65 -VQVLRP 70 >gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 194 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +R E +TQ + R G + +S+ E G ++ + +L+ L+ LL+ Sbjct: 7 GSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALEVDTDTLLR 66 >gi|212691942|ref|ZP_03300070.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855] gi|212665544|gb|EEB26116.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855] Length = 142 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RN R LTQ+E+ R G ++ IS++E+GK + I + + L +L+ Sbjct: 12 IRNERLRKGLTQEELGKRIGVGKAQISKIESGK-GLTIKTITKVLDALGMSASVILQ 67 >gi|254383920|ref|ZP_04999267.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194342812|gb|EDX23778.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 76 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKE-AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R E A++TQ ++ R G + + +E G+ + +++ +A PL ++ + Sbjct: 8 NRIRVLRFEHAEMTQADLAERIGVTRQTVIAIEKGRYSPSLETAFRIARVFAVPLEQVFQ 67 >gi|160942938|ref|ZP_02090177.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] gi|158445839|gb|EDP22842.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium prausnitzii M21/2] Length = 85 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP R+ + + + R E +TQ + G ++ I+ +E G+ Sbjct: 11 MPTRQERSVSMPKNL---------KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYN 61 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I+ + LD L +L Sbjct: 62 PTINLCRSICKILDKTLDELF 82 >gi|319425493|gb|ADV53567.1| Cupin 2 conserved barrel domain protein [Shewanella putrefaciens 200] Length = 182 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + + L Sbjct: 4 GASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62 >gi|83589232|ref|YP_429241.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572146|gb|ABC18698.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 100 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + LTQ+E+ +TG QS IS LE+G+ ++ ++ ++ L + Sbjct: 31 VARAVIKLRLDYGLTQEELAQKTGVPQSVISRLESGRHLPSLRSLEKISKKLGLQIRLDF 90 Query: 82 KP 83 P Sbjct: 91 IP 92 >gi|26989587|ref|NP_745012.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984467|gb|AAN68476.1|AE016480_3 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 199 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ EP + R +RK +T E+ + +IS+LE S Sbjct: 5 PQPPASEPGGAAP-----QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYP 59 Query: 62 NIDNMIILAHTLDT 75 +I + +A +L Sbjct: 60 SIPALFNIARSLGV 73 >gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661] gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus jannaschii DSM 2661] Length = 79 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+++ + G ++ I +E GK ++ +A + + Sbjct: 16 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 73 >gi|313585026|gb|ADR70745.1| hypothetical transcriptional repressor [Xanthomonas citri subsp. citri] Length = 108 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 F + R L+QKE+ R G A +++ E GK ++ LA L P Sbjct: 11 FARRLQQARLHTGLSQKELGIRAGLDPYVASPRVNQYERGKHEPKLETAERLAQALGIP 69 >gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] Length = 133 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ ++RK +TQ E+ + G +S+ E S +I+ + LA DT + Sbjct: 2 KKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSV 61 Query: 78 WKLLK 82 +L++ Sbjct: 62 DELMQ 66 >gi|313116063|ref|ZP_07801487.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621660|gb|EFQ05191.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 148 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R TQK++ ++ QS +S E+G ID +I +A L + LKP Sbjct: 42 RMAKGWTQKDLADKMRVKQSLVSRWESGDCNYTIDTLIDIADALGLSVQCPLKP 95 >gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKE-AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + A+LTQ E+ R G + + +E G+ + +++ +AH PL + + Sbjct: 8 NRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRYSPSLELAFQIAHVFGVPLADVFQ 67 >gi|226366151|ref|YP_002783934.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244641|dbj|BAH54989.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 128 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R R T +E+ N + ++SE+E G+ + + + + LD PL Sbjct: 6 REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDALDVPLS 65 Query: 79 KLL 81 +L Sbjct: 66 DVL 68 >gi|239617008|ref|YP_002940330.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] gi|239505839|gb|ACR79326.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R +TQ+E+ R G + I +E GK ++ + +A L + +L + Sbjct: 5 IKKVRITKGEITQEELARRVGVTRQTIIYIEKGKFNPSVKLALKIAKVLGCSVEELFE 62 >gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] Length = 516 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ L+ + +G ++S + +E G+ + + +A+ L +L+ Sbjct: 5 VGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVTFGELI 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] Length = 830 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK LT E++ +TG ++S++SE+E G I + + L LL Sbjct: 573 GERLRSARKAVGLTLDELKVKTGLSKSYLSEMENGAKEIQRKHAVGFGPVLGVEPSWLL 631 >gi|330722216|gb|EGH00105.1| Transcriptional regulator2C MerR family [gamma proteobacterium IMCC2047] Length = 200 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R L ++ + G ++ +S +E + + ++D + L +L L L Sbjct: 17 LGAAIRRERVSQGLKIADVASLAGISKGMLSRIENAQVSTSLDTLQRLCDSLGLHLSNLF 76 Query: 82 K 82 K Sbjct: 77 K 77 >gi|327490523|gb|EGF22304.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE K++Q E+ G ++ I+ +E K ++ I LA LDT L L Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|324009966|gb|EGB79185.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|323963980|gb|EGB59472.1| helix-turn-helix protein [Escherichia coli M863] gi|327254078|gb|EGE65707.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|311033076|ref|ZP_07711166.1| hypothetical protein Bm3-1_21479 [Bacillus sp. m3-13] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +++RK AK+TQ+++ + G ++ I +E+GK +++ ++ D + ++ Sbjct: 3 NRIKDLRKAAKMTQEDLAVQVGVSRQSIIAIESGKYNPSLELAYNISKVFDCIIEEVF 60 >gi|309701701|emb|CBJ01009.1| putative transcriptional regulator [Escherichia coli ETEC H10407] gi|323937517|gb|EGB33787.1| helix-turn-helix protein [Escherichia coli E1520] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|307308819|ref|ZP_07588507.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306900624|gb|EFN31236.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 472 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ R++R +LTQ + R G + S+++++E + ++ ++ LA + Sbjct: 5 KLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64 Query: 79 KL 80 +L Sbjct: 65 EL 66 >gi|306813594|ref|ZP_07447777.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] gi|305853041|gb|EFM53485.1| putative DNA-binding transcriptional regulator [Escherichia coli NC101] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|300939145|ref|ZP_07153832.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455960|gb|EFK19453.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|301017870|ref|ZP_07182512.1| helix-turn-helix protein [Escherichia coli MS 69-1] gi|300399967|gb|EFJ83505.1| helix-turn-helix protein [Escherichia coli MS 69-1] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|294794616|ref|ZP_06759752.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454946|gb|EFG23319.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 153 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + L+ L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|293409776|ref|ZP_06653352.1| conserved hypothetical protein [Escherichia coli B354] gi|291470244|gb|EFF12728.1| conserved hypothetical protein [Escherichia coli B354] gi|323976926|gb|EGB72013.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|293414771|ref|ZP_06657420.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] gi|291434829|gb|EFF07802.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|289426044|ref|ZP_06427791.1| cupin domain protein [Propionibacterium acnes SK187] gi|289153587|gb|EFD02301.1| cupin domain protein [Propionibacterium acnes SK187] Length = 288 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + + + R + T ++ + G ++ + +E G Sbjct: 85 LPTKCSIMHCMDTGAEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + ++ L+ L L L++P Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167 >gi|284921317|emb|CBG34385.1| putative transcriptional regulator [Escherichia coli 042] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|281178569|dbj|BAI54899.1| conserved hypothetical protein [Escherichia coli SE15] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|271963706|ref|YP_003337902.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270506881|gb|ACZ85159.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 119 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R +R T +E+ + ++SE+E G+ + + + + L PL Sbjct: 5 RQLLGDVLRRLRVRQSRTLREVSTLARVSLGYLSEVERGQKEASSELLASICGALGVPLS 64 Query: 79 KLLK 82 ++L+ Sbjct: 65 QVLR 68 >gi|218704902|ref|YP_002412421.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|293404913|ref|ZP_06648905.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298380556|ref|ZP_06990155.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300900069|ref|ZP_07118264.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|331646712|ref|ZP_08347815.1| putative oxidoreductase/putative repressor [Escherichia coli M605] gi|218431999|emb|CAR12884.1| putative DNA-binding transcriptional regulator [Escherichia coli UMN026] gi|291427121|gb|EFF00148.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1412] gi|298277998|gb|EFI19512.1| HTH-type transcriptional regulator ydcN [Escherichia coli FVEC1302] gi|300356415|gb|EFJ72285.1| helix-turn-helix protein [Escherichia coli MS 198-1] gi|323187286|gb|EFZ72597.1| helix-turn-helix family protein [Escherichia coli RN587/1] gi|330911245|gb|EGH39755.1| transcriptional regulator yidN, Cro/CI family [Escherichia coli AA86] gi|331045464|gb|EGI17591.1| putative oxidoreductase/putative repressor [Escherichia coli M605] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|218689364|ref|YP_002397576.1| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|218426928|emb|CAR07787.2| putative DNA-binding transcriptional regulator [Escherichia coli ED1a] gi|315298577|gb|EFU57832.1| helix-turn-helix protein [Escherichia coli MS 16-3] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|218553960|ref|YP_002386873.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|256018347|ref|ZP_05432212.1| putative DNA-binding transcriptional regulator [Shigella sp. D9] gi|300901847|ref|ZP_07119882.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|301306843|ref|ZP_07212892.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|332279399|ref|ZP_08391812.1| conserved hypothetical protein [Shigella sp. D9] gi|218360728|emb|CAQ98289.1| putative DNA-binding transcriptional regulator [Escherichia coli IAI1] gi|300406059|gb|EFJ89597.1| helix-turn-helix protein [Escherichia coli MS 84-1] gi|300837928|gb|EFK65688.1| helix-turn-helix protein [Escherichia coli MS 124-1] gi|315253499|gb|EFU33467.1| helix-turn-helix protein [Escherichia coli MS 85-1] gi|332101751|gb|EGJ05097.1| conserved hypothetical protein [Shigella sp. D9] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|218694976|ref|YP_002402643.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300823240|ref|ZP_07103372.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|331667806|ref|ZP_08368670.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331677280|ref|ZP_08377962.1| putative oxidoreductase/putative repressor [Escherichia coli H591] gi|218351708|emb|CAU97423.1| putative DNA-binding transcriptional regulator [Escherichia coli 55989] gi|300524204|gb|EFK45273.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323170076|gb|EFZ55731.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|331065391|gb|EGI37286.1| putative oxidoreductase/putative repressor [Escherichia coli TA271] gi|331075131|gb|EGI46444.1| putative oxidoreductase/putative repressor [Escherichia coli H591] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|215486671|ref|YP_002329102.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312969257|ref|ZP_07783462.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|215264743|emb|CAS09124.1| predicted DNA-binding transcriptional regulator [Escherichia coli O127:H6 str. E2348/69] gi|312286144|gb|EFR14059.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|295131728|ref|YP_003582391.1| cupin domain protein [Propionibacterium acnes SK137] gi|291376789|gb|ADE00644.1| cupin domain protein [Propionibacterium acnes SK137] Length = 288 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + + + R + T ++ + G ++ + +E G Sbjct: 85 LPTKCSIMHCMDTGAEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + ++ L+ L L L++P Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167 >gi|209918706|ref|YP_002292790.1| hypothetical protein ECSE_1515 [Escherichia coli SE11] gi|209911965|dbj|BAG77039.1| conserved hypothetical protein [Escherichia coli SE11] gi|324021052|gb|EGB90271.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|170680755|ref|YP_001743794.1| DNA-binding protein [Escherichia coli SMS-3-5] gi|170518473|gb|ACB16651.1| DNA-binding protein [Escherichia coli SMS-3-5] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|91210676|ref|YP_540662.1| hypothetical protein UTI89_C1653 [Escherichia coli UTI89] gi|117623680|ref|YP_852593.1| hypothetical protein APECO1_579 [Escherichia coli APEC O1] gi|218558366|ref|YP_002391279.1| DNA-binding transcriptional regulator [Escherichia coli S88] gi|237705412|ref|ZP_04535893.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91072250|gb|ABE07131.1| hypothetical protein YdcN [Escherichia coli UTI89] gi|115512804|gb|ABJ00879.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365135|emb|CAR02845.1| putative DNA-binding transcriptional regulator [Escherichia coli S88] gi|222033183|emb|CAP75923.1| Uncharacterized HTH-type transcriptional regulator [Escherichia coli LF82] gi|226900169|gb|EEH86428.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294493300|gb|ADE92056.1| DNA-binding protein [Escherichia coli IHE3034] gi|307627046|gb|ADN71350.1| putative DNA-binding transcriptional regulator [Escherichia coli UM146] gi|312946016|gb|ADR26843.1| putative DNA-binding transcriptional regulator [Escherichia coli O83:H1 str. NRG 857C] gi|315289769|gb|EFU49159.1| helix-turn-helix protein [Escherichia coli MS 110-3] gi|323952682|gb|EGB48551.1| helix-turn-helix protein [Escherichia coli H252] gi|323956844|gb|EGB52577.1| helix-turn-helix protein [Escherichia coli H263] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|82777001|ref|YP_403350.1| hypothetical protein SDY_1742 [Shigella dysenteriae Sd197] gi|81241149|gb|ABB61859.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|74312212|ref|YP_310631.1| hypothetical protein SSON_1704 [Shigella sonnei Ss046] gi|73855689|gb|AAZ88396.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323169618|gb|EFZ55286.1| helix-turn-helix family protein [Shigella sonnei 53G] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|15614377|ref|NP_242680.1| hypothetical protein BH1814 [Bacillus halodurans C-125] gi|10174432|dbj|BAB05533.1| BH1814 [Bacillus halodurans C-125] Length = 297 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76 E + + + +R+ L+Q+++ G Q+ IS +E K+T +D +A L P Sbjct: 2 ETLSVGHKIKTLRQSLGLSQRDLAE--GICTQALISHIEKNKTTPTVDVFFNIAKKLGAP 59 Query: 77 LWKLLK 82 L+ Sbjct: 60 ADYFLE 65 >gi|15801709|ref|NP_287727.1| hypothetical protein Z2285 [Escherichia coli O157:H7 EDL933] gi|15831292|ref|NP_310065.1| hypothetical protein ECs2037 [Escherichia coli O157:H7 str. Sakai] gi|168748967|ref|ZP_02773989.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168759171|ref|ZP_02784178.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168761476|ref|ZP_02786483.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168769035|ref|ZP_02794042.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168774335|ref|ZP_02799342.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168781404|ref|ZP_02806411.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168788512|ref|ZP_02813519.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168799439|ref|ZP_02824446.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|195936926|ref|ZP_03082308.1| hypothetical protein EscherichcoliO157_10762 [Escherichia coli O157:H7 str. EC4024] gi|208810881|ref|ZP_03252714.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208815156|ref|ZP_03256335.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208818249|ref|ZP_03258569.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209397754|ref|YP_002270440.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|217329087|ref|ZP_03445167.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254792977|ref|YP_003077814.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|261224380|ref|ZP_05938661.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261257365|ref|ZP_05949898.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|291282537|ref|YP_003499355.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|12515268|gb|AAG56341.1|AE005362_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361504|dbj|BAB35461.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187770139|gb|EDU33983.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188016678|gb|EDU54800.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|189000937|gb|EDU69923.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189354230|gb|EDU72649.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189361883|gb|EDU80302.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189368111|gb|EDU86527.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189371782|gb|EDU90198.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189378128|gb|EDU96544.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508] gi|208724387|gb|EDZ74095.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208731804|gb|EDZ80492.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208738372|gb|EDZ86054.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209159154|gb|ACI36587.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209771028|gb|ACI83826.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771030|gb|ACI83827.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771032|gb|ACI83828.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771034|gb|ACI83829.1| hypothetical protein ECs2037 [Escherichia coli] gi|209771036|gb|ACI83830.1| hypothetical protein ECs2037 [Escherichia coli] gi|217317526|gb|EEC25954.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254592377|gb|ACT71738.1| predicted DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|290762410|gb|ADD56371.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|320190111|gb|EFW64762.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. EC1212] gi|320637032|gb|EFX06893.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. G5101] gi|320642399|gb|EFX11685.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. 493-89] gi|320647755|gb|EFX16500.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H- str. H 2687] gi|320653362|gb|EFX21499.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659028|gb|EFX26651.1| putative DNA-binding transcriptional regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320663862|gb|EFX31090.1| putative DNA-binding transcriptional regulator [Escherichia coli O157:H7 str. LSU-61] gi|326340694|gb|EGD64491.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1044] gi|326340945|gb|EGD64738.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli O157:H7 str. 1125] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|194431949|ref|ZP_03064239.1| DNA-binding protein [Shigella dysenteriae 1012] gi|331682878|ref|ZP_08383497.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|194419857|gb|EDX35936.1| DNA-binding protein [Shigella dysenteriae 1012] gi|320182531|gb|EFW57422.1| Transcriptional regulator yidN, Cro/CI family [Shigella boydii ATCC 9905] gi|331080509|gb|EGI51688.1| putative oxidoreductase/putative repressor [Escherichia coli H299] gi|332094663|gb|EGI99708.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|148548035|ref|YP_001268137.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512093|gb|ABQ78953.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ EP + R +RK +T E+ + +IS+LE S Sbjct: 5 PQPPASEPGGAAP-----QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYP 59 Query: 62 NIDNMIILAHTLDT 75 +I + +A +L Sbjct: 60 SIPALFNIARSLGV 73 >gi|188494052|ref|ZP_03001322.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331652693|ref|ZP_08353704.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331662905|ref|ZP_08363815.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] gi|188489251|gb|EDU64354.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|331049799|gb|EGI21865.1| putative oxidoreductase/putative repressor [Escherichia coli M718] gi|331058704|gb|EGI30681.1| putative oxidoreductase/putative repressor [Escherichia coli TA143] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|193062540|ref|ZP_03043634.1| DNA-binding protein [Escherichia coli E22] gi|260843745|ref|YP_003221523.1| putative DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|192931662|gb|EDV84262.1| DNA-binding protein [Escherichia coli E22] gi|257758892|dbj|BAI30389.1| predicted DNA-binding transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|323163586|gb|EFZ49411.1| helix-turn-helix family protein [Escherichia coli E128010] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|26247719|ref|NP_753759.1| hypothetical protein c1858 [Escherichia coli CFT073] gi|110641615|ref|YP_669345.1| hypothetical protein ECP_1437 [Escherichia coli 536] gi|191172851|ref|ZP_03034387.1| DNA-binding protein [Escherichia coli F11] gi|227886179|ref|ZP_04003984.1| possible transcriptional regulator [Escherichia coli 83972] gi|300975406|ref|ZP_07172980.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300976462|ref|ZP_07173445.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|301046759|ref|ZP_07193881.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|331657437|ref|ZP_08358399.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] gi|26108121|gb|AAN80321.1|AE016760_180 Hypothetical protein ydcN [Escherichia coli CFT073] gi|47600733|emb|CAE55854.1| hypothetical protein YdcN [Escherichia coli Nissle 1917] gi|110343207|gb|ABG69444.1| hypothetical protein YdcN (putative DNA-binding protein) [Escherichia coli 536] gi|190906857|gb|EDV66460.1| DNA-binding protein [Escherichia coli F11] gi|227836844|gb|EEJ47310.1| possible transcriptional regulator [Escherichia coli 83972] gi|300301320|gb|EFJ57705.1| helix-turn-helix protein [Escherichia coli MS 185-1] gi|300308732|gb|EFJ63252.1| helix-turn-helix protein [Escherichia coli MS 200-1] gi|300410034|gb|EFJ93572.1| helix-turn-helix protein [Escherichia coli MS 45-1] gi|307553442|gb|ADN46217.1| putative HTH-type transcriptional regulator YdcN [Escherichia coli ABU 83972] gi|315290641|gb|EFU50013.1| helix-turn-helix protein [Escherichia coli MS 153-1] gi|320195607|gb|EFW70232.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli WV_060327] gi|324015156|gb|EGB84375.1| helix-turn-helix protein [Escherichia coli MS 60-1] gi|331055685|gb|EGI27694.1| putative oxidoreductase/putative repressor [Escherichia coli TA206] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|16129393|ref|NP_415951.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|89108277|ref|AP_002057.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|157157044|ref|YP_001462706.1| DNA-binding protein [Escherichia coli E24377A] gi|157160911|ref|YP_001458229.1| DNA-binding protein [Escherichia coli HS] gi|170020236|ref|YP_001725190.1| XRE family transcriptional regulator [Escherichia coli ATCC 8739] gi|170081108|ref|YP_001730428.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|191164983|ref|ZP_03026827.1| DNA-binding protein [Escherichia coli B7A] gi|193066983|ref|ZP_03047952.1| DNA-binding protein [Escherichia coli E110019] gi|194436585|ref|ZP_03068686.1| DNA-binding protein [Escherichia coli 101-1] gi|238900660|ref|YP_002926456.1| putative DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|253773591|ref|YP_003036422.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161493|ref|YP_003044601.1| putative DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|256022888|ref|ZP_05436753.1| predicted DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|260855159|ref|YP_003229050.1| putative DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|260867878|ref|YP_003234280.1| putative DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|293433816|ref|ZP_06662244.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|297521909|ref|ZP_06940295.1| putative DNA-binding transcriptional regulator [Escherichia coli OP50] gi|300921799|ref|ZP_07137960.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300928985|ref|ZP_07144486.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300948113|ref|ZP_07162247.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300958230|ref|ZP_07170381.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|301020147|ref|ZP_07184274.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|301326006|ref|ZP_07219420.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301645375|ref|ZP_07245319.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|307138086|ref|ZP_07497442.1| putative DNA-binding transcriptional regulator [Escherichia coli H736] gi|307309783|ref|ZP_07589433.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309794168|ref|ZP_07688592.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|312971601|ref|ZP_07785776.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331642010|ref|ZP_08343145.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|2829660|sp|P77626|YDCN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator ydcN gi|1742340|dbj|BAA15062.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|1787704|gb|AAC74516.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. MG1655] gi|157066591|gb|ABV05846.1| DNA-binding protein [Escherichia coli HS] gi|157079074|gb|ABV18782.1| DNA-binding protein [Escherichia coli E24377A] gi|169755164|gb|ACA77863.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888943|gb|ACB02650.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|190904755|gb|EDV64460.1| DNA-binding protein [Escherichia coli B7A] gi|192959573|gb|EDV90007.1| DNA-binding protein [Escherichia coli E110019] gi|194424617|gb|EDX40603.1| DNA-binding protein [Escherichia coli 101-1] gi|238862307|gb|ACR64305.1| predicted DNA-binding transcriptional regulator [Escherichia coli BW2952] gi|242377187|emb|CAQ31919.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324635|gb|ACT29237.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973394|gb|ACT39065.1| predicted DNA-binding transcriptional regulator [Escherichia coli B str. REL606] gi|253977605|gb|ACT43275.1| predicted DNA-binding transcriptional regulator [Escherichia coli BL21(DE3)] gi|257753808|dbj|BAI25310.1| predicted DNA-binding transcriptional regulator [Escherichia coli O26:H11 str. 11368] gi|257764234|dbj|BAI35729.1| predicted DNA-binding transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|260449440|gb|ACX39862.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|291324635|gb|EFE64057.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088] gi|299881904|gb|EFI90115.1| helix-turn-helix protein [Escherichia coli MS 196-1] gi|300315108|gb|EFJ64892.1| helix-turn-helix protein [Escherichia coli MS 175-1] gi|300421824|gb|EFK05135.1| helix-turn-helix protein [Escherichia coli MS 182-1] gi|300452356|gb|EFK15976.1| helix-turn-helix protein [Escherichia coli MS 116-1] gi|300463050|gb|EFK26543.1| helix-turn-helix protein [Escherichia coli MS 187-1] gi|300847223|gb|EFK74983.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|301076329|gb|EFK91135.1| helix-turn-helix protein [Escherichia coli MS 146-1] gi|306909501|gb|EFN39995.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308122073|gb|EFO59335.1| helix-turn-helix protein [Escherichia coli MS 145-7] gi|310336198|gb|EFQ01398.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|315060712|gb|ADT75039.1| predicted DNA-binding transcriptional regulator [Escherichia coli W] gi|315136074|dbj|BAJ43233.1| putative DNA-binding transcriptional regulator [Escherichia coli DH1] gi|315619613|gb|EFV00138.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320187371|gb|EFW62064.1| Transcriptional regulator yidN, Cro/CI family [Shigella flexneri CDC 796-83] gi|320199440|gb|EFW74031.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli EC4100B] gi|323157392|gb|EFZ43506.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323178085|gb|EFZ63664.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185431|gb|EFZ70792.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378722|gb|ADX50990.1| transcriptional regulator, XRE family [Escherichia coli KO11] gi|323942192|gb|EGB38365.1| helix-turn-helix protein [Escherichia coli E482] gi|323947787|gb|EGB43789.1| helix-turn-helix protein [Escherichia coli H120] gi|323962367|gb|EGB57953.1| helix-turn-helix protein [Escherichia coli H489] gi|323973651|gb|EGB68830.1| helix-turn-helix protein [Escherichia coli TA007] gi|324117665|gb|EGC11569.1| helix-turn-helix protein [Escherichia coli E1167] gi|331038808|gb|EGI11028.1| putative oxidoreductase/putative repressor [Escherichia coli H736] gi|332343099|gb|AEE56433.1| helix-turn-helix family protein YdcN [Escherichia coli UMNK88] Length = 178 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|317470497|ref|ZP_07929885.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] gi|316902012|gb|EFV23938.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] Length = 149 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ N RK++ L+Q+++ + G ++ IS+ ETG++ +I LA L +L+ Sbjct: 3 LGNSLFNARKKSNLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDELI 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|303229040|ref|ZP_07315846.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] gi|302516251|gb|EFL58187.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella atypica ACS-134-V-Col7a] Length = 91 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+ A L+Q+E+ R+G QS I+ +E G +ID + +A L+ Sbjct: 38 RARENAGLSQRELAERSGVPQSTIARIERG-YNTSIDTLSKIAFALNK 84 >gi|302524660|ref|ZP_07277002.1| transcriptional regulator [Streptomyces sp. AA4] gi|302433555|gb|EFL05371.1| transcriptional regulator [Streptomyces sp. AA4] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ L+ + R+G +++ I ++E G++ + LA L L +L+ Sbjct: 9 LAAAVREARQDRALSAGVLAERSGVSRAMIGKIERGEAQPTAVLLSRLATALGLTLSELI 68 >gi|229492212|ref|ZP_04386020.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|229320838|gb|EEN86651.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 292 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R R+ + L+ +E+ R + + +S +ETGK+ +++D + + L L Sbjct: 9 LIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDAL 68 Query: 81 L 81 L Sbjct: 69 L 69 >gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] Length = 109 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N F+N+R + TQ ++ + G ++S +S ETG +++ + +A + + LL Sbjct: 4 FHNIFKNLRMQNHYTQGQMADLLGISRSAVSMYETGNREPDLETLEKIAKFFNVDMNYLL 63 >gi|163838939|ref|YP_001623344.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952415|gb|ABY21930.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 551 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P +R + + + R++RK A +T ++ A S +S +E GK Sbjct: 62 PGTERAASND----EIDVISLGRRVRHLRKSANMTLDDLGLMVDAAPSQLSMIENGKREP 117 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + LA +L + +LL Sbjct: 118 KLSLLNSLAKSLGVSIEQLL 137 >gi|77406024|ref|ZP_00783101.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77175360|gb|EAO78152.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 75 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQK + + F S S++E G+ ++ D +I L++ + LL Sbjct: 4 RRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLL 61 >gi|22537400|ref|NP_688251.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76798004|ref|ZP_00780262.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|22534275|gb|AAN00124.1|AE014249_5 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76586627|gb|EAO63127.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|157419703|gb|ABV55392.1| transcriptional regulator, Cro/CI family protein [Streptococcus dysgalactiae subsp. equisimilis] gi|323127163|gb|ADX24460.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 74 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQK + + F S S++E G+ ++ D +I L++ + LL Sbjct: 3 RRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLL 60 >gi|15595732|ref|NP_249226.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099522|ref|ZP_01363440.1| hypothetical protein PaerPA_01000534 [Pseudomonas aeruginosa PACS2] gi|218889277|ref|YP_002438141.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237245|ref|ZP_04930568.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719] gi|254243628|ref|ZP_04936950.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192] gi|9946402|gb|AAG03924.1|AE004490_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126169176|gb|EAZ54687.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719] gi|126197006|gb|EAZ61069.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192] gi|218769500|emb|CAW25260.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 184 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +RK +T + + + + ++S++E G S +D+++ ++ L P Sbjct: 15 VRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVP 65 >gi|325964657|ref|YP_004242563.1| hypothetical protein Asphe3_33230 [Arthrobacter phenanthrenivorans Sphe3] gi|323470744|gb|ADX74429.1| Helix-turn-helix protein [Arthrobacter phenanthrenivorans Sphe3] Length = 421 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F R R E LTQ E+ ++ S+IS LETG+ + + LA L+ L Sbjct: 5 FGEKLRAERLERGLTQAELGKDL-YSPSYISLLETGRREPTAEVIEELARRLELAPKAL 62 >gi|313499113|gb|ADR60479.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 199 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ EP + R +RK +T E+ + +IS+LE S Sbjct: 5 PQPPASEPGGAAP-----QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYP 59 Query: 62 NIDNMIILAHTLDT 75 +I + +A +L Sbjct: 60 SIPALFNIARSLGV 73 >gi|320105393|ref|YP_004180983.1| Cupin 2 barrel domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923914|gb|ADV80989.1| Cupin 2 conserved barrel domain protein [Terriglobus saanensis SP1PR4] Length = 233 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E ++A + E+ I + +R + + E+ TG + S++S+LETG+ + N+ Sbjct: 15 ESEDAEAFITEKRI-GERIKALRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLA 73 Query: 68 ILAHTLDTPLWKLLKP 83 +A L +P Sbjct: 74 RIAMVFSKDLNYFFEP 89 >gi|266620773|ref|ZP_06113708.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867593|gb|EFC99891.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R R RKE ++ E+ + G A + ++E G ++I+ ++ LAH LD + Sbjct: 4 DRAGVAKRIRQRRKELGMSSAEVAGKIGRAVHYYGDIERGTCGMSIETLLDLAHYLDLSV 63 Query: 78 WKLL 81 +L Sbjct: 64 DYIL 67 >gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 199 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +RK +T E+ + +IS+LE S +I + +A +L Sbjct: 18 QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGV 73 >gi|108757425|ref|YP_634451.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461305|gb|ABF86490.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++R+ TQ ++ G ++ + LE+G + + + +A L L +L+ Sbjct: 10 LARNIRSLRETRGATQAQLSRLAGVPRATWAHLESGAANPTLSVLHRVAAALQVSLEELI 69 >gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens] Length = 182 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R ++Q+E+ R G S IS +E+ S ++ + + + L + Sbjct: 6 GGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFF 64 >gi|52079512|ref|YP_078303.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784877|ref|YP_090706.1| hypothetical protein BLi01105 [Bacillus licheniformis ATCC 14580] gi|52002723|gb|AAU22665.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347379|gb|AAU40013.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 183 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + +RK + ++ + TG ++ ++++E G S+ I + +A+ L Sbjct: 6 KQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTS 65 Query: 80 L 80 L Sbjct: 66 L 66 >gi|89896705|ref|YP_520192.1| hypothetical protein DSY3959 [Desulfitobacterium hafniense Y51] gi|89336153|dbj|BAE85748.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 106 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R+ +TQK++ + G + IS E G ++I+I ++ + + L+ L + Sbjct: 2 AENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDI 59 >gi|118581525|ref|YP_902775.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504235|gb|ABL00718.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 76 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R LTQ ++ TG Q ISE+E GK I + + LA L + LL Sbjct: 25 RHREGLTQVQLAEATGIPQRHISEMENGKRVIGVTSAKKLAEALHSDHRGLL 76 >gi|321272295|gb|ADW80180.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 306 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQK++ N+ G I E E G+S ++++ + +A L + LL Sbjct: 163 VGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISIIDLL 222 Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R E TQK++ + G I + E G I I + +A L + L+ Sbjct: 13 VGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEALSVNVKGLV 72 >gi|320539393|ref|ZP_08039062.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030518|gb|EFW12528.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] Length = 125 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M IRK LTQ+ + + G + I E G S +++ + +A TL Sbjct: 12 MSVSTRLAYIRKSKGLTQQALADAIGLHVTQIKRYEAGTSQPSLEAIKKIAQTLRVTTDS 71 Query: 80 LL 81 L+ Sbjct: 72 LI 73 >gi|332653120|ref|ZP_08418865.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518266|gb|EGJ47869.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L Q+ + + G ++ IS +E G +I + +A T + ++ Sbjct: 3 LGNRLKELRAAKGLNQQGLGSLVGASRQTISLIERGDYNPSITLALRIAKVFGTTVDEVF 62 >gi|302876490|ref|YP_003845123.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307687161|ref|ZP_07629607.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302579347|gb|ADL53359.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E +I N + R E ++Q E+ G ++ IS +ETG +I LD Sbjct: 1 MSEELILKNRLKVARAEKNISQGELARMVGVSRQTISSIETGHFNPTAKLALIFCIALDK 60 Query: 76 PLWKLL 81 L Sbjct: 61 KFEDLF 66 >gi|289168804|ref|YP_003447073.1| transcriptional regulator [Streptococcus mitis B6] gi|288908371|emb|CBJ23213.1| transcriptional regulator [Streptococcus mitis B6] Length = 287 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGEV-LSRTSLSKIESGKATPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|229194032|ref|ZP_04320926.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228589432|gb|EEK47357.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK A LT K + S +S++E G + ++ + +++ L+ PL+ Sbjct: 6 VGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65 >gi|255092294|ref|ZP_05321772.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255100378|ref|ZP_05329355.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|255306320|ref|ZP_05350491.1| putative phage repressor [Clostridium difficile ATCC 43255] gi|255649811|ref|ZP_05396713.1| putative phage repressor [Clostridium difficile QCD-37x79] Length = 118 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +RKE LTQ+E+ + G +Q + ET + + LA + + L Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|148998894|ref|ZP_01826330.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|168576210|ref|ZP_02722104.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194397548|ref|YP_002037696.1| hypothetical protein SPG_0986 [Streptococcus pneumoniae G54] gi|225856709|ref|YP_002738220.1| hypothetical protein SPP_1071 [Streptococcus pneumoniae P1031] gi|307067756|ref|YP_003876722.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755321|gb|EDK62372.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|183577909|gb|EDT98437.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357215|gb|ACF55663.1| conserved domain protein [Streptococcus pneumoniae G54] gi|225725852|gb|ACO21704.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|306409293|gb|ADM84720.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|332200556|gb|EGJ14628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQK+I F S +++E G+ T+ D ++ L++ D LL Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLL 60 >gi|21242245|ref|NP_641827.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107669|gb|AAM36363.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 109 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R R LTQ E+ + IS E+G + DN+ L L L Sbjct: 4 LFPARLREARDRRGLTQAELGKEASLPSTTISHFESGSRKPSFDNLRRLTKVLGVSTDYL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|314922041|gb|EFS85872.1| cupin domain protein [Propionibacterium acnes HL001PA1] gi|314965926|gb|EFT10025.1| cupin domain protein [Propionibacterium acnes HL082PA2] gi|314980669|gb|EFT24763.1| cupin domain protein [Propionibacterium acnes HL110PA3] gi|315091025|gb|EFT63001.1| cupin domain protein [Propionibacterium acnes HL110PA4] gi|315095153|gb|EFT67129.1| cupin domain protein [Propionibacterium acnes HL060PA1] gi|315105385|gb|EFT77361.1| cupin domain protein [Propionibacterium acnes HL050PA2] gi|327328782|gb|EGE70542.1| putative Helix-turn-helix domain protein [Propionibacterium acnes HL103PA1] Length = 197 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 26/75 (34%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 ++ + R + T ++ G ++ + +E G + ++ Sbjct: 2 HYMDTGAEPLAHAIGARVKQQRMARRWTLDQLARYAGVSRRVLVNVEQGAVNPRVGTLLR 61 Query: 69 LAHTLDTPLWKLLKP 83 L+ L L L++P Sbjct: 62 LSDALGVGLPALVEP 76 >gi|313898555|ref|ZP_07832092.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956937|gb|EFR38568.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 72 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L+E +I N + R L+Q ++ G +++ IS +ETG+ +IL L+ Sbjct: 2 LKEELILRNRLKQARTAMHLSQTQLAELVGVSRNTISSIETGQFNPTAKLALILCIALEQ 61 Query: 76 PLWKLL 81 L Sbjct: 62 KFEDLF 67 >gi|307332017|ref|ZP_07611109.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306882357|gb|EFN13451.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 825 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDT 75 R +R A LTQ+E+ R+G + S I LETGK + + +LA LD Sbjct: 8 LRPLRVRAGLTQEELSARSGVSVSTIRRLETGKSRDHRLSTLNLLADALDV 58 >gi|303245781|ref|ZP_07332064.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302493044|gb|EFL52909.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 124 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 18 ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R++ + R +R +T +++ + G + IS++E GK ++ + + +A L Sbjct: 59 DRLLAGEHPVRVLRSHRGMTLQQVADICGVTNAHISQIERGKRCMSTELLQKMAEALRVD 118 Query: 77 LWKLLKP 83 + +LL P Sbjct: 119 I-ELLLP 124 >gi|300858677|ref|YP_003783660.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300686131|gb|ADK29053.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302206384|gb|ADL10726.1| Helix-turn-helix XRE-family like protein [Corynebacterium pseudotuberculosis C231] gi|302330940|gb|ADL21134.1| Helix-turn-helix XRE-family like protein [Corynebacterium pseudotuberculosis 1002] gi|308276627|gb|ADO26526.1| Helix-turn-helix XRE-family like protein [Corynebacterium pseudotuberculosis I19] Length = 129 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 43 PEPLLRQALGAALRAFRADKGITLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 102 Query: 74 DTPLWKLL 81 + +L Sbjct: 103 GATVADVL 110 >gi|282900395|ref|ZP_06308345.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii CS-505] gi|281194708|gb|EFA69655.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii CS-505] Length = 528 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 2 PRRKRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P RK+ + + RK ++Q+E+ G +QSWI ++E G+ Sbjct: 453 PHRKQHRSVKGKRSVKPHDDLLGEQVLQARKAISISQRELAKLAGKSQSWIRDVENGRLK 512 Query: 61 I 61 Sbjct: 513 P 513 >gi|262195991|ref|YP_003267200.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079338|gb|ACY15307.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 152 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 4/76 (5%) Query: 12 SDAILRERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 D R R +F+ R E TQ ++ + G + ++ +E G + + Sbjct: 5 PDENERLRALFLQRLPPVLTEARMERGWTQADVAEQLGVSLAYYGRIERGDHVPSFLMTV 64 Query: 68 ILAHTLDTPLWKLLKP 83 LA L LL P Sbjct: 65 KLARLFALSLDGLLDP 80 >gi|227509901|ref|ZP_03939950.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512835|ref|ZP_03942884.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083835|gb|EEI19147.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227190621|gb|EEI70688.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 78 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK+ KL+Q + + G A+ I+ +E K +++ I +A L T L L Sbjct: 13 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 70 >gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] Length = 155 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 28/55 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + ++R++A +Q+++ + G ++ IS+ E + +DN++ LA Sbjct: 30 LADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLAQIYRVS 84 >gi|254388827|ref|ZP_05004059.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294813122|ref|ZP_06771765.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326441579|ref|ZP_08216313.1| hypothetical protein SclaA2_10964 [Streptomyces clavuligerus ATCC 27064] gi|197702546|gb|EDY48358.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294325721|gb|EFG07364.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 280 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R RK L+Q+E+ +R + ++ ++E GK + D +A LD L Sbjct: 13 RDFMGEELRRRRKAHGLSQRELGDRMFLSGGYVGQIEVGKRRMTED----IAGRLDVEL 67 >gi|115351079|ref|YP_772918.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281067|gb|ABI86584.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 219 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + D + ER+ R++R T + R+G ++S IS +E ++ + Sbjct: 7 PPVDDTGINERI--ARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAVVLDK 64 Query: 69 LAHTLDTPLWKLL 81 LA L L L Sbjct: 65 LAAGLGVSLAGLF 77 >gi|332702859|ref|ZP_08422947.1| helix-turn-helix domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553008|gb|EGJ50052.1| helix-turn-helix domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 123 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ N R +R +T +++ + G + IS++E GK +++ D + +A L T Sbjct: 58 VDRLLAGENPVRVLRSYRGMTLQQVADACGVTNAHISQIEMGKRSMSTDLLKKMATALRT 117 Query: 76 PLWKLL 81 LL Sbjct: 118 DAELLL 123 >gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 194 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + LTQ+E+ R + +S+ E G+ ++ + LA TL + LL Sbjct: 10 IRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQGCPDVSLLPSLAQTLGVEVEGLL 65 >gi|319784815|ref|YP_004144291.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170703|gb|ADV14241.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RK+ +T ++ T + +S++E G ++ ++ + L+ L P+ + Sbjct: 54 GREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFR 113 >gi|291544366|emb|CBL17475.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 322 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + +RK++ +Q+E+ + ++ +S+ E +S +++ M+ L+ Sbjct: 1 MIFADKLIQLRKKSGWSQEELAQQMHVSRQSVSKWEGAQSVPDLEKMVQLSRLFHVTTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|253681078|ref|ZP_04861881.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253562927|gb|EES92373.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 221 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R ++ +T+K++ + G ++ +I E+E+GK IN M ++ L L Sbjct: 5 GSKIREARLKSNITEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDL 59 >gi|209809204|ref|YP_002264742.1| putative HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] gi|208010766|emb|CAQ81159.1| putative HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 504 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S +++R+ RN+RK LT +++ R + S++S +E GK + D Sbjct: 4 SKSLIRQSHFLGTKIRNLRKRNHLTMEDLSTRCVRVDPENSPSVSYLSMIERGKRVPSAD 63 Query: 65 NMIILAHTLDTP 76 + ++A Sbjct: 64 MLEVIATVFQKE 75 >gi|167567621|ref|ZP_02360537.1| DNA-binding regulatory protein [Burkholderia oklahomensis EO147] gi|167569134|ref|ZP_02362008.1| DNA-binding regulatory protein [Burkholderia oklahomensis C6786] Length = 81 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE ++Q+ + + +S + ++E G+ + + N++ +A + +LL Sbjct: 17 LGAAIRARRKELAISQEALADFAEIDRSHMGKIERGERNVTVMNIVRIARAMQLLPSELL 76 Query: 82 K 82 + Sbjct: 77 R 77 >gi|153870922|ref|ZP_02000218.1| transcriptional regulator, XRE family protein [Beggiatoa sp. PS] gi|152072613|gb|EDN69783.1| transcriptional regulator, XRE family protein [Beggiatoa sp. PS] Length = 114 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M + ++ LS + R E ++Q ++ R G ++ I LE G Sbjct: 1 MKKPLKNTRLLSRHTTIVLETLGAMLKAARIECHISQADLAERVGVSRYTIGLLEKGNPN 60 Query: 61 INIDNMIILAHTLDTPL 77 + I + A + PL Sbjct: 61 VAIGTVFEAATIVGIPL 77 >gi|153853942|ref|ZP_01995275.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] gi|149753324|gb|EDM63255.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] Length = 147 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 17 RER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ER M ++ R ++ TQ+ + R ++ IS E KS +I ++I L+ Sbjct: 6 PERRNTDMEIGKKLKDARMKSGFTQETVAERINVSRQTISNWENEKSYPDIISVIELSSL 65 Query: 73 LDTPLWKLLK 82 L LLK Sbjct: 66 YSISLDDLLK 75 >gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 281 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ KLTQKE+ + A + IS E G++ +DN+ + P KLL Sbjct: 41 NIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIEQMTSIFGIPKSKLL 97 >gi|21227029|ref|NP_632951.1| PbsX family transcriptional regulator [Methanosarcina mazei Go1] gi|20905349|gb|AAM30623.1| transcriptional regulator, PBSX family [Methanosarcina mazei Go1] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+ + +R G + I +E GK ++D LA + + + Sbjct: 3 NKIKVYRAMHDLTQENLADRVGVTRQTIHAIEKGKYDPSLDLAFKLARLFNANIEDIF 60 >gi|300814289|ref|ZP_07094561.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511556|gb|EFK38784.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + NN IRK+ +TQK+I N G +IS+LE G S ++ +A L+ + +L Sbjct: 1 MLKNNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEIARFLECGVEEL 60 >gi|300782967|ref|YP_003763258.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792481|gb|ADJ42856.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 421 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R E LTQ+E+ ++ +++S +ETG T + D + A L + Sbjct: 3 ESVGERLRELRTERGLTQRELAGPQ-YSAAYVSSVETGARTPSGDALRFFARQLGIDPDE 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|292491277|ref|YP_003526716.1| hypothetical protein Nhal_1163 [Nitrosococcus halophilus Nc4] gi|291579872|gb|ADE14329.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 101 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R + QKE+ + G ++S +SE+E+GK + + + P Sbjct: 6 LRLMRVFHDMKQKELAEKLGISKSHLSEIESGKKVPTLALLNRYSEVFGIP 56 >gi|239994900|ref|ZP_04715424.1| transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ +R + K++Q+E+ + G ++ IS +ETG+ T ++ + +A P+ ++ Sbjct: 7 NHIHKLRLQHKISQQELADAIGVSRKTISTVETGRFTPSVVIALKIAEYFAIPVEQVF 64 >gi|228986840|ref|ZP_04146968.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772922|gb|EEM21360.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 59 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE ++Q+ + G ++++ISE+E K N+ I +A TL T + + Sbjct: 2 NKLAKFRKEKSISQEILAICVGSSRTYISEIENNKKQPNVKLAIRIAKTLGTNVESIF 59 >gi|222152359|ref|YP_002561534.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113170|emb|CAR40616.1| DNA-binding protein [Streptococcus uberis 0140J] Length = 112 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E LTQ+++ + +++ +LE + I ++ + + LD + Sbjct: 12 KRIRLLRLEKGLTQEQLEEKADLGTNYVYKLENQSTNIKVNTLEKVMTALDVDFEEFF 69 >gi|220913926|ref|YP_002489235.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860804|gb|ACL41146.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 421 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F R R E LTQ E+ ++ S+IS LETG+ + + LA L+ L Sbjct: 5 FGEKLRAERLERGLTQAELGKDL-YSPSYISLLETGRREPTAEVIEELARRLELAPKAL 62 >gi|241664279|ref|YP_002982639.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240866306|gb|ACS63967.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 117 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +LTQ+++ G Q IS E G + + +I LA + PL LL Sbjct: 14 LGKAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQLADVFNVPLESLL 73 Query: 82 K 82 + Sbjct: 74 R 74 >gi|281355570|ref|ZP_06242064.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281318450|gb|EFB02470.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ LT KE + +G + + +S+LE G ++ + ++ TLD L L Sbjct: 7 GRKIHQYRKDKNLTIKEFSDISGISTALVSQLERGIGNPSLSVLRLICRTLDISLSSLF 65 >gi|150398683|ref|YP_001329150.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030198|gb|ABR62315.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 263 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + + R +++Q ++ N G + +S LETG+S ++ LA LD P + Sbjct: 3 FGSRLKEWRGHRRMSQLDLANAAGISARHLSFLETGRSKPTEGMILRLASVLDVPARE 60 >gi|94990047|ref|YP_598147.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|94543555|gb|ABF33603.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 249 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LT +++ G +S IS+ E G + I + +A K++ Sbjct: 7 FPAMVKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMM 66 >gi|94988166|ref|YP_596267.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94993958|ref|YP_602056.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] gi|94541674|gb|ABF31723.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94547466|gb|ABF37512.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] Length = 249 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R LT +++ G +S IS+ E G + I + +A K++ Sbjct: 7 FPAMVKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMM 66 >gi|310767097|gb|ADP12047.1| Predicted transcriptional regulator [Erwinia sp. Ejp617] Length = 187 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E + + + TG +++ +S +E +++ + L + + +LL Sbjct: 10 LARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTMSRLL 69 >gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 190 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E +L+Q+ + ++ +S+ E G S + +N+ LA + L+ Sbjct: 3 KIKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSKPSSENLARLAEIFSVHIQDLM 59 >gi|262283189|ref|ZP_06060956.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261441|gb|EEY80140.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 135 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ + +TQ+ + ++ IS ET K +I ++ L+ + L +LLK Sbjct: 4 GKKLKEARQLSGMTQESVAEELNVSRQTISNWETEKFYPDILYVLQLSDLYEVSLDELLK 63 >gi|227513208|ref|ZP_03943257.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC 11577] gi|227083589|gb|EEI18901.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC 11577] Length = 104 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 30/53 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +RK LT E+ ++ G++QS+IS ET ++T +I+ + + L T Sbjct: 7 GKKLKELRKAKGLTASELGSKMGYSQSYISRFETDRATPDINALGDMLKYLGT 59 >gi|283795783|ref|ZP_06344936.1| conserved domain protein [Clostridium sp. M62/1] gi|291076414|gb|EFE13778.1| conserved domain protein [Clostridium sp. M62/1] Length = 106 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK+ L +E+ +TG + S + ++E G +++ N+ +L +T LL Sbjct: 12 IRDIRKDKGLLIEEVAAKTGISVSTLGQVEQGGRNLSMKNLYMLMEVYETDANTLL 67 >gi|114327151|ref|YP_744308.1| MerR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315325|gb|ABI61385.1| transcriptional regulator, MerR family [Granulibacter bethesdensis CGDNIH1] Length = 464 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R+E +Q+ + R G + S+++ +E + + +I LA TL L Sbjct: 3 RPLIGRTVRRLRQERGESQQSLAVRLGISASYLNLIEHDQRGVTASLLIKLAETLRVDLR 62 Query: 79 KL 80 L Sbjct: 63 AL 64 >gi|113867425|ref|YP_725914.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113526201|emb|CAJ92546.1| shikimate kinase containing a XRE-type HTH DNA-binding domain [Ralstonia eutropha H16] Length = 313 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R++R +++K++ G ++ +++ LETG ++ + +A LD PL + Sbjct: 37 LLGERIRSLRASRGMSRKDLARGAGVSERYLANLETGTGNASVLLLRQVARALDVPLPVV 96 Query: 81 L 81 L Sbjct: 97 L 97 >gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 205 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R R IRK +LT K++ R+G A S +S++E + +++ + + A L+ Sbjct: 15 QLQRKEIGARLRAIRKRHELTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALEV 74 Query: 76 PLWKLLK 82 + ++ + Sbjct: 75 DIAQIFR 81 >gi|15901276|ref|NP_345880.1| transcriptional repressor, putative [Streptococcus pneumoniae TIGR4] gi|15903322|ref|NP_358872.1| transcriptional repressor, putative [Streptococcus pneumoniae R6] gi|298502624|ref|YP_003724564.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|14972912|gb|AAK75520.1| putative transcriptional repressor [Streptococcus pneumoniae TIGR4] gi|15458920|gb|AAL00083.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|298238219|gb|ADI69350.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] Length = 79 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 19 RMIFVNNFRN--IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R N + R E LTQ ++ G + I +E GK ++ + L Sbjct: 8 RTKVAKNLKLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKT 67 Query: 77 LWKLL 81 L +L Sbjct: 68 LDQLF 72 >gi|148260500|ref|YP_001234627.1| hypothetical protein Acry_1500 [Acidiphilium cryptum JF-5] gi|146402181|gb|ABQ30708.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] Length = 469 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +R+E LTQ+++ +R G + S+++ +E + + +I L TL L Sbjct: 3 KPLIGRIVRRLRQEQGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKVDLA 62 Query: 79 KL 80 L Sbjct: 63 AL 64 >gi|297565618|ref|YP_003684590.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850067|gb|ADH63082.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 73 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R+ +++Q ++ +Q I ++E + + ++ LA+ L +L Sbjct: 1 MIGERLKALREARQMSQYDLARAAHVSQGLIWQIEANRKNPGLKTLLRLANALSVSPDQL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 132 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R IRKE K T E+ G S++S +E +I + +A L Sbjct: 7 GEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERNLQQPSIQVIEKIADYLGV 59 >gi|225868447|ref|YP_002744395.1| transcriptional regulator [Streptococcus equi subsp. zooepidemicus] gi|225870630|ref|YP_002746577.1| transcriptional regulator [Streptococcus equi subsp. equi 4047] gi|225700034|emb|CAW94064.1| putative transcriptional regulator [Streptococcus equi subsp. equi 4047] gi|225701723|emb|CAW99080.1| putative transcriptional regulator [Streptococcus equi subsp. zooepidemicus] Length = 65 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE +TQ+E+ + ++ I LE G+ +I +A + + Sbjct: 3 NRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIF 60 >gi|160939527|ref|ZP_02086877.1| hypothetical protein CLOBOL_04421 [Clostridium bolteae ATCC BAA-613] gi|158437737|gb|EDP15499.1| hypothetical protein CLOBOL_04421 [Clostridium bolteae ATCC BAA-613] Length = 468 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----D 74 +V + R R ++Q+++ G + ++S++ETGK+ + + L D Sbjct: 79 ETWVRDIREKRAAYGISQQKLALAAGITRPYLSDIETGKAHPSKALQEAITEALERFNPD 138 Query: 75 TPLWKLL 81 PL L Sbjct: 139 APLEMLF 145 >gi|126740981|ref|ZP_01756664.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126717907|gb|EBA14626.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 204 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + I R+ RKE LT +E +S +S++E ++ + + + L TL+ Sbjct: 19 PDGEILGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELE 78 Query: 77 LWKLL 81 +L Sbjct: 79 TPQLF 83 >gi|119472046|ref|ZP_01614304.1| Predicted transcriptional regulator [Alteromonadales bacterium TW-7] gi|119445181|gb|EAW26473.1| Predicted transcriptional regulator [Alteromonadales bacterium TW-7] Length = 66 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN RKEA L+Q+E+ + ++ IS +ET + T ++ + +A + P+ L Sbjct: 3 NNIAKFRKEAGLSQQELADAISVSRKTISTVETNRFTPSVIIALKIAANFNMPVESLF 60 >gi|317496310|ref|ZP_07954668.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] gi|316913568|gb|EFV35056.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] Length = 64 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ +TQ E+ + G ++ ++S +E K +I L+ P+ L Sbjct: 5 NKISFYRKKNGMTQDELASMLGVSRQFVSSIEGAKKIPSIKLAFQLSDIFGVPVDNLF 62 >gi|309812095|ref|ZP_07705855.1| toxin-antitoxin system, antitoxin component, Xre family [Dermacoccus sp. Ellin185] gi|308433974|gb|EFP57846.1| toxin-antitoxin system, antitoxin component, Xre family [Dermacoccus sp. Ellin185] Length = 60 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+ + + S + +E G+ ++D M+ L+ L L +L Sbjct: 1 MSQEALAHAVDLHLSMVGRVERGEVAPSLDTMMKLSCGLGVELAELF 47 >gi|315501700|ref|YP_004080587.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|315408319|gb|ADU06436.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 213 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R IR T +E+ G + ++SE+E G+ + + + + L L Sbjct: 5 RRVIGGVLRRIRLRQGRTLREVALAAGVSLPYLSEVERGRKEASSEVLAAICRALGIHLA 64 Query: 79 KLLK 82 LL+ Sbjct: 65 DLLE 68 >gi|269968531|ref|ZP_06182537.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] gi|269826866|gb|EEZ81194.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] Length = 210 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK KL+ + R G ++ + E+E G + +I + L+ L + ++ Sbjct: 32 VAARIKEHRKRLKLSLDALSKRAGISKGMLVEVEKGAANPSISTLCKLSAALGISVADIV 91 >gi|227549722|ref|ZP_03979771.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078218|gb|EEI16181.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 467 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 23/57 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + + S+++++E + + + + Sbjct: 3 KTYVGSRLRQLRRERNLSQASLAATLELSASYVNQIEHDVRPLTVPVLKRITEAFGV 59 >gi|169630151|ref|YP_001703800.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242118|emb|CAM63146.1| Possible transcriptional regulatory protein [Mycobacterium abscessus] Length = 116 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 6 REAIGDTLRSARSGQGKTLREVSDSARVSLGYLSEVERGRKEASSELLAAICGALDVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 QVL 68 >gi|330837028|ref|YP_004411669.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748931|gb|AEC02287.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 191 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R LT + R+G +++ +S++E+ K + + ++ L L +L Sbjct: 9 GKNIQKLRMSRNLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKISKGLGVELQDVL 67 >gi|307320352|ref|ZP_07599770.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306894074|gb|EFN24842.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 472 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ R++R +LTQ + R G + S+++++E + ++ ++ LA + Sbjct: 5 KLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64 Query: 79 KL 80 +L Sbjct: 65 EL 66 >gi|297616433|ref|YP_003701592.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297144270|gb|ADI01027.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 128 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ L++ ++ G + ++ +LE G+ +++ + L Sbjct: 6 KALGRRIREQRQKLGLSRSQLAEIIGVSDYYVGQLERGERVMSLAVFMRFVFCLRVSPDY 65 Query: 80 LLK 82 LL Sbjct: 66 LLT 68 >gi|311742480|ref|ZP_07716289.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium marinum DSM 15272] gi|311314108|gb|EFQ84016.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium marinum DSM 15272] Length = 511 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ R+ + LTQ ++ +QS ++ +E G+ + +D + + LD+ L Sbjct: 15 IRDARQHSGLTQAQLATELSTSQSAVNRIEKGQQNLTLDMLARIGKALDSELV 67 >gi|228926909|ref|ZP_04089975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832644|gb|EEM78215.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 114 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E ++ ++S IS LET + ++D++ +A D + L+ Sbjct: 4 FGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLM 63 >gi|226305801|ref|YP_002765761.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184918|dbj|BAH33022.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 194 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+++ +T ++ T + S +S LE+G N++ ++ +A PL L+ Sbjct: 14 GPRLRALRQQSDMTLADLSETTDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 >gi|225376643|ref|ZP_03753864.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans DSM 16841] gi|225211526|gb|EEG93880.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans DSM 16841] Length = 101 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ + ++ N G +QS++ ++E G I+ + + L+ L Sbjct: 4 GEKITYYRKKKNYSVNKLANLAGISQSYLRDIELGNKNPTIEFLSYICEALNISLKDFF 62 >gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 189 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +T E+ N + +++ IS +E +++ + L L L Sbjct: 10 GARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAALGLSLSSFF 68 >gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108] gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 116 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK +K+TQ+++ + G ++ IS E GK + +++ +A L Sbjct: 1 MIGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|17975230|ref|NP_536425.1| putative helix-turn-helix transcriptional regulator [Burkholderia phage phiE125] gi|134288626|ref|YP_001111148.1| gp69 [Burkholderia phage phi644-2] gi|17484091|gb|AAL40342.1|AF447491_70 gp68 [Burkholderia phage phiE125] gi|134132011|gb|ABO60808.1| gp69 [Burkholderia phage phi644-2] Length = 128 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++ Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 122 >gi|83719318|ref|YP_441974.1| DNA-binding protein [Burkholderia thailandensis E264] gi|257138149|ref|ZP_05586411.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653143|gb|ABC37206.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 192 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R +R + + R+ ++S IS +E +S+ + LA L + Sbjct: 5 QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIAS 64 Query: 80 LLK 82 L + Sbjct: 65 LFE 67 >gi|29374946|ref|NP_814099.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29342404|gb|AAO80170.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 70 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R + LTQK + TG ++ I +E G+S + I+LA L+ L Sbjct: 8 LRAARIKKSLTQKRLAELTGVTETTIRNIENGRSCPSFKLSIMLAKLLNVDFETL 62 >gi|333025906|ref|ZP_08453970.1| putative regulatory protein [Streptomyces sp. Tu6071] gi|332745758|gb|EGJ76199.1| putative regulatory protein [Streptomyces sp. Tu6071] Length = 284 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ N R +R++ +T + + G+ +S IS +E GK+ ++ ++ Sbjct: 10 ARIALGNRLRALRRQRGITARALAADCGWHESKISRVENGKALPSVQDLTKWTEACGAAP 69 >gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 236 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK KLT +E+ + ++S +S+ E G+ I+IDN+ ++A LD + KLL Sbjct: 9 VGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68 >gi|302521517|ref|ZP_07273859.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302430412|gb|EFL02228.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 276 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 24/45 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R R +RK TQ+++ +R+ ++ + IS +ETG+ + Sbjct: 13 REALGVKLRQLRKARGWTQEDLADRSAYSPTHISAIETGRKPPTL 57 >gi|291528651|emb|CBK94237.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RN R + +TQKE+ ++ G +S I E G + ++ +A+ L + L P Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70 >gi|237803325|ref|ZP_04590910.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025306|gb|EGI05362.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 105 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F F+ +R +TQ++ + ++ +I LE G+ + ++ ++ LA L L+ Sbjct: 15 FGIAFKRLRHLKGMTQEDFSSV--VSERYIRMLEKGQYSPSLSTIVELAKVLGIGAVSLV 72 >gi|237738629|ref|ZP_04569110.1| predicted protein [Fusobacterium sp. 2_1_31] gi|229424112|gb|EEO39159.1| predicted protein [Fusobacterium sp. 2_1_31] Length = 213 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST---INIDNMIILA 70 + R E L+QKE + G Q ++S +E G+ +++ I++A Sbjct: 5 GRKIKKFRIENNLSQKEFAEKIGVTQGFLSYVENGRLNIESPSLEKKILIA 55 >gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] Length = 236 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK KLT +E+ + ++S +S+ E G+ I+IDN+ ++A LD + KLL Sbjct: 9 VGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68 >gi|167002988|ref|ZP_02268778.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|238561193|ref|ZP_04609475.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|238525188|gb|EEP88617.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243061409|gb|EES43595.1| DNA-binding protein [Burkholderia mallei PRL-20] Length = 69 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 24/38 (63%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R +R+ A LTQ ++ R QS++S++E G+ ++I Sbjct: 6 LRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 43 >gi|254260977|ref|ZP_04952031.1| gp68 [Burkholderia pseudomallei 1710a] gi|254219666|gb|EET09050.1| gp68 [Burkholderia pseudomallei 1710a] Length = 128 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++ Sbjct: 66 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 122 >gi|167647481|ref|YP_001685144.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349911|gb|ABZ72646.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 71 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ R +R E +TQ ++ R G + ++ +E GK + +++ +A L + + Sbjct: 9 NDIRRLRFEHGEMTQADLAQRIGMTRQTVAAIEQGKYSPSLEAAFRIAQVFGVGLDAVFR 68 >gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 81 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +A LTQ E+ G ++ + +E G ++ + +A L+ P+ +L Sbjct: 5 LRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKNPSVGTALRIARALNRPVEELF 60 >gi|33152220|ref|NP_873573.1| hypothetical protein HD1096 [Haemophilus ducreyi 35000HP] gi|33148442|gb|AAP95962.1| hypothetical protein HD_1096 [Haemophilus ducreyi 35000HP] Length = 129 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK L+Q+EI ++ + S ++E GKS IN + +A L+ L+ Sbjct: 4 FEKIRSLRKNHNLSQEEIADKINLSVSGYRKIENGKSRINHKRLEQIAEALEVSPLDLI 62 >gi|158317088|ref|YP_001509596.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112493|gb|ABW14690.1| putative transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 392 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDN 65 D P ++DA+ R F+ R+ TQ +I G QS +SE+ TG+ + +++ Sbjct: 127 DRPEMADAL--ARRDIGTVFKIYRQWTGATQTQIAAVCGLPQSHVSEISTGRRQVTSLEI 184 Query: 66 MIILAHTLDTP 76 +A +D P Sbjct: 185 FERIADGIDIP 195 >gi|332668582|ref|YP_004451589.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332337619|gb|AEE44202.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 176 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R++ T +++ + +++SE+E G+ + + ++ + L L Sbjct: 24 RRLVGAVLRERREDQGRTLRDVALDARVSVAYLSEIERGRKEASSEVLVAVCRALGMRLV 83 Query: 79 KLL 81 L+ Sbjct: 84 DLV 86 >gi|328478348|gb|EGF48126.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 112 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + R++ LTQ ++ + + IS E G+S +I ++ ++ L + Sbjct: 1 MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|259507468|ref|ZP_05750368.1| transcriptional regulator ClgR [Corynebacterium efficiens YS-314] gi|259164956|gb|EEW49510.1| transcriptional regulator ClgR [Corynebacterium efficiens YS-314] Length = 107 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R+ R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 21 PEPLLREALGAALRSFRADKGITLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80 Query: 74 DTPLWKLL 81 + +L Sbjct: 81 GASVADVL 88 >gi|225025876|ref|ZP_03715068.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353] gi|224956798|gb|EEG38007.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353] Length = 64 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q E+ R ++ I +E G I I + H L L +L Sbjct: 5 RLKAARAALDMSQAELAKRVNVSRQTIVAIEKGDYNPTIKLCIAICHELGKTLDELF 61 >gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] Length = 478 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ IF R IR LTQ + G + S+++ +E + + + ++ L+ Sbjct: 3 DQKIFAGPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQRPLTVQLILKLSSVYKVD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VEEL 66 >gi|16265194|ref|NP_437986.1| hypothetical protein SM_b20754 [Sinorhizobium meliloti 1021] gi|15141334|emb|CAC49846.1| probable transcriptional regulator [Sinorhizobium meliloti 1021] Length = 491 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ R++R +LTQ + R G + S+++++E + ++ ++ LA + Sbjct: 24 KLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 83 Query: 79 KL 80 +L Sbjct: 84 EL 85 >gi|25028411|ref|NP_738465.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|23493696|dbj|BAC18665.1| putative transcription regulator [Corynebacterium efficiens YS-314] Length = 108 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R+ R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 22 PEPLLREALGAALRSFRADKGITLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 81 Query: 74 DTPLWKLL 81 + +L Sbjct: 82 GASVADVL 89 >gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 130 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK +TQKE+ ++ S ETGK T +ID ++ ++ + L +L+ Sbjct: 9 NLARYRKARHMTQKELAKMLNISRQAYSNYETGKRTPDIDLLLKISQIYNITLDQLI 65 >gi|302672095|ref|YP_003832055.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396568|gb|ADL35473.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 346 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + R + ++ K++ + G IS E+GK I+ + +A L + Sbjct: 1 MFEKNLKYYRLKKNMSMKDLADAVGVTSMAISNYESGKRQPEIEIINKMAEVLGIKVVDF 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|293400046|ref|ZP_06644192.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306446|gb|EFE47689.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 134 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++M + ++ RK LTQK++ G ++ I + E G ++ + +A+ L+ L Sbjct: 5 DKMDIKDKIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELGLRNPKMETLTKIANALNINL 64 Query: 78 WKLL 81 + + Sbjct: 65 FDFV 68 >gi|284800921|ref|YP_003412786.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284056483|gb|ADB67424.1| transcriptional regulator [Listeria monocytogenes 08-5578] Length = 108 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R +TQ ++ ++ ++ IS+ E G + D + +A + L Sbjct: 1 MFGKILKTLRINRGMTQADLGSKLNISKVSISKYENGNQFPDTDTLKRIADIFNVSTDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|238059861|ref|ZP_04604570.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881672|gb|EEP70500.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 74 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ R +R +TQ E+ +R G + I +E G+ + +++ +A + PL + + Sbjct: 9 NSIRALRFANGEMTQAELADRVGVTRQTIIAIEQGRYSPSLEVAFQIARVFNVPLDDVFE 68 >gi|257789806|ref|YP_003180412.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317489265|ref|ZP_07947782.1| hypothetical protein HMPREF1023_01481 [Eggerthella sp. 1_3_56FAA] gi|257473703|gb|ACV54023.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316911666|gb|EFV33258.1| hypothetical protein HMPREF1023_01481 [Eggerthella sp. 1_3_56FAA] Length = 85 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R LT++ + G + + +E+G + +D M ++ L PL +L+ Sbjct: 9 FGEAVRMQRAVCNLTKERLSLMVGINRLTLRRIESGDANPTLDVMYRISEGLGVPLSELI 68 >gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 68 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LTQ+E+ G + I +E GK ++ +A + + Sbjct: 3 NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGVLIEDIF 60 >gi|210610564|ref|ZP_03288490.1| hypothetical protein CLONEX_00680 [Clostridium nexile DSM 1787] gi|210152423|gb|EEA83429.1| hypothetical protein CLONEX_00680 [Clostridium nexile DSM 1787] Length = 106 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK+ L +E+ +TG + S + ++E G +++ N+ +L +T LL Sbjct: 12 IRDIRKDKGLLIEEVAAKTGISVSTLGQVEQGGRNLSMKNLYMLMEVYETDANSLL 67 >gi|114569540|ref|YP_756220.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340002|gb|ABI65282.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 67 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R +R E + +Q E+ R G ++ I+ +ETGK ++ LA + + + P Sbjct: 3 NRLRVLRAERRWSQAELGERVGVSRQAINAVETGKHDPSLTLAFALAGAFELAIEAVFDP 62 >gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] Length = 321 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK++ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|84503225|ref|ZP_01001310.1| hypothetical protein OB2597_16722 [Oceanicola batsensis HTCC2597] gi|84388466|gb|EAQ01415.1| hypothetical protein OB2597_16722 [Oceanicola batsensis HTCC2597] Length = 75 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 32/53 (60%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +A L QK++ +R QS I+ LE+G+ +++ +++LA + ++LL Sbjct: 10 ARIKAGLGQKDLADRLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPFQLL 62 >gi|331702633|ref|YP_004399592.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129976|gb|AEB74529.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 110 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R++ TQ + ++ IS+ E G + +I+ +I L+ L Sbjct: 1 MVLGQRIKEEREKLGWTQDRLAEELHVSRQAISKWEVGSAYPDIERLIQLSDLFGVSLDS 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 116 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 31/54 (57%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + KE ++QKE RTG A+S IS+ + ++ D ++I+ LD ++LL Sbjct: 10 ELLKEKGMSQKEFAQRTGIAESSISDWKKKRTNPVSDKILIICEVLDVTPYELL 63 >gi|288917479|ref|ZP_06411845.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288351182|gb|EFC85393.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 98 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 4 RKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 R+ EP + R+ F + R +R+ +Q+E+ G QS ++ E G + Sbjct: 13 RRMGEPGARETYQAARLAFELGRSVRELRQRRGWSQEELARAAGMTQSAVARFEAGGTVP 72 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 + + LA LD L + P Sbjct: 73 TLPVLERLAEALDADLDMRVIP 94 >gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 97 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RK+ +TQ+E+ +R G +S I +E G ++ ++ + ++ L+TP Sbjct: 27 AAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 188 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+E + TG +++ + ++E G+S+ + + +A ++ ++ Sbjct: 10 GNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNVAFSTFIE 69 Query: 83 P 83 P Sbjct: 70 P 70 >gi|240143278|ref|ZP_04741879.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257204756|gb|EEV03041.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 210 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RN R A+LTQKE+ R G +S I E G + ++ +A+ L+ + L P Sbjct: 13 IRNFRIAAELTQKELAERCGLNESTIRNYELGNRYPDEATLLNIANHLNVSFFALSDP 70 >gi|172064748|ref|YP_001812398.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171998233|gb|ACB69149.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 115 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R R+ K +Q E+ + S I+ E+G + D + LA+ L+ L Sbjct: 10 LFQERLRAARELRKWSQGELAEKASMPPSSIAHFESGSRKPSFDTLRRLANALEVTTDYL 69 Query: 81 L 81 L Sbjct: 70 L 70 >gi|119960674|ref|YP_949077.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119947533|gb|ABM06444.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 421 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F R R E LTQ E+ ++ S+IS LETG+ + + LA L+ L Sbjct: 5 FGEKLRAERLERGLTQAELGKNL-YSPSYISLLETGRREPTAEVIEELARRLELAPKAL 62 >gi|89889583|ref|ZP_01201094.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7] gi|89517856|gb|EAS20512.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7] Length = 251 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + IR L+Q+ + + + E G+S I+ +I +A+ + +L Sbjct: 4 FGKNIKKIRGIKSLSQQAFADLFDLKRGTLGAYEEGRSEPKIETIIKIANYFSISIDDIL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|28379010|ref|NP_785902.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1] gi|28271848|emb|CAD64753.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1] Length = 75 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ LTQ+E+ + + + +E G+ + D ++ L+ L+ + LL+ Sbjct: 4 KLKYYREAMNLTQEELARHAKVSVAMVQSMENGRRKGSTDTILKLSDALNVTVDDLLR 61 >gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217] gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217] Length = 244 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+ + L+QK++ G Q S +E G+++I ++++ L+ P + Sbjct: 1 MSISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVPTDR 60 Query: 80 LLK 82 +LK Sbjct: 61 ILK 63 >gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] Length = 204 Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE KLTQ+E+ G ++ I E G+ I D LA + + LL Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLL 59 >gi|325524090|gb|EGD02259.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 244 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EAK T E+ + ++S++E + I+I +++ +A L+ PL L+ Sbjct: 9 GQRIRRLRREAKKTLLEVATEARLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 67 >gi|319946290|ref|ZP_08020529.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747546|gb|EFV99800.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 124 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 21 QKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 78 >gi|315612250|ref|ZP_07887164.1| helix-turn-helix domain protein [Streptococcus sanguinis ATCC 49296] gi|331267212|ref|YP_004326842.1| transcriptional regulator [Streptococcus oralis Uo5] gi|315315643|gb|EFU63681.1| helix-turn-helix domain protein [Streptococcus sanguinis ATCC 49296] gi|326683884|emb|CBZ01502.1| transcriptional regulator [Streptococcus oralis Uo5] Length = 288 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F N ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGNVYKEIRESKGLTQEEVCGDV-LSRTSLSKIESGKTTPKYENMEFLLRQVNMTFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|300727575|ref|ZP_07060965.1| helix-turn-helix domain protein [Prevotella bryantii B14] gi|299775164|gb|EFI71766.1| helix-turn-helix domain protein [Prevotella bryantii B14] Length = 161 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R N + IR+E + +++ G + +S +E G+ ++ +D + +A L Sbjct: 95 DRARIGNRIKEIREERGIEARDLARLVGIDAANLSRIENGRYSVGLDILAKIATALGK 152 >gi|289642165|ref|ZP_06474316.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289508011|gb|EFD28959.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 286 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ RK A ++ +++ + G + ++S++E G + + + +A L L Sbjct: 13 IRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL 67 >gi|262404323|ref|ZP_06080878.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] gi|262349355|gb|EEY98493.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] Length = 181 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + +RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKVLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 170 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +++R E TQ+E+ + G IS E G+ +D ++ L + LL Sbjct: 5 SRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGERVPPLDIIVKLVQIFNVSSDYLL 62 >gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] Length = 336 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + N+RK A +Q+E+ + G ++ IS+ E +S +++ ++ L+ Sbjct: 1 MILADKIVNLRKRAGWSQEELAEKMGVSRQSISKWEGAQSVPDMNRILKLSEVFCVSTDY 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|225019957|ref|ZP_03709149.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] gi|224947321|gb|EEG28530.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] Length = 125 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI +++R +A L Q+++ + QS IS E G + ++D +I LA + Sbjct: 1 MIISQRLKDLRSDADLNQQDVADAVNVTQSSISNYELGVNLPDLDVVIKLAKFFNVSSDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|254486081|ref|ZP_05099286.1| regulator of the anaerobic catobolism of benzoate BzdR [Roseobacter sp. GAI101] gi|214042950|gb|EEB83588.1| regulator of the anaerobic catobolism of benzoate BzdR [Roseobacter sp. GAI101] Length = 296 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 +P L +R+ R RK L ++ + +G + ++++LE G+ I++ + Sbjct: 5 AQPIDPGEELIQRL--AVRVREARKARGLPRRVLSEMSGVSPRYLAQLEAGEGNISVILL 62 Query: 67 IILAHTLDTPLWKLL 81 +A LD + LL Sbjct: 63 QRVAQALDLRVEMLL 77 >gi|169833987|ref|YP_001694730.1| Cro/CI family transcriptional regulator [Streptococcus pneumoniae Hungary19A-6] gi|168996489|gb|ACA37101.1| transcriptional regulator, Cro/CI family [Streptococcus pneumoniae Hungary19A-6] Length = 409 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str. 13] gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium perfringens str. 13] Length = 367 Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + RK+ KLTQ+++ + G A+S +S E G NI +I L+ ++ + L+ Sbjct: 9 FSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLI 68 >gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 182 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + + + Sbjct: 3 VGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62 >gi|311063744|ref|YP_003970469.1| transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|310866063|gb|ADP35432.1| Transcriptional regulator [Bifidobacterium bifidum PRL2010] Length = 415 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + +TQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|313114704|ref|ZP_07800206.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622929|gb|EFQ06382.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 231 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE +TQK+ G +Q+ +S E G +D ++ +A + LL Sbjct: 3 FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 >gi|310286841|ref|YP_003938099.1| transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] gi|309250777|gb|ADO52525.1| Transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] Length = 415 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + +TQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|301632617|ref|XP_002945378.1| PREDICTED: hypothetical protein LOC100487190 [Xenopus (Silurana) tropicalis] Length = 81 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R E +Q ++ R G ++++S +E G+++ ++ ++ L LD +L Sbjct: 9 LGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVRMLMRLCMALDVRTADVL 68 >gi|294792860|ref|ZP_06758007.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294456759|gb|EFG25122.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 153 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + L+ L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|291518928|emb|CBK74149.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 105 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +N R +TQ ++ N +IS +E G++ +++ +I + + L +L+ Sbjct: 5 YGEQIKNYRIGLGMTQNQVANALEVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELV 64 >gi|291460791|ref|ZP_06600181.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416595|gb|EFE90314.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 64 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R L+Q+++ + G ++ I+ +E G I + L L +L Sbjct: 5 RMKSARAAKDLSQQQLADLVGVSRQTINAIEKGDYNPTIRLCTAICRALSKTLDELF 61 >gi|297543548|ref|YP_003675850.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841323|gb|ADH59839.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + KLTQKE+ + G +IS++E G ++ I +A+ +T + + Sbjct: 2 NKLKELRIKYKLTQKELAKKLGVTPDYISQIE-GGRIPGMETAIKIANFFNTTIDDIF 58 >gi|254784572|ref|YP_003072000.1| XRE family transcriptional regulator [Teredinibacter turnerae T7901] gi|237683453|gb|ACR10717.1| transcriptional regulator, XRE family [Teredinibacter turnerae T7901] Length = 512 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63 + +++R+ RN+RK LT +++ +R + S++S +E GK + Sbjct: 3 DTKSLMRKAHFLGTKIRNLRKRNNLTIEDLSSRCVKVDAESAPSVSYLSMIERGKRVPSE 62 Query: 64 DNMIILAHTLDTPL 77 + ++A + P Sbjct: 63 SMLEVIARVFEKPP 76 >gi|238018698|ref|ZP_04599124.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC 17748] gi|313893193|ref|ZP_07826770.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|237865169|gb|EEP66459.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC 17748] gi|313442546|gb|EFR60961.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 153 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + L+ L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|224282399|ref|ZP_03645721.1| Xre-type transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313139541|ref|ZP_07801734.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132051|gb|EFR49668.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 415 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + +TQ+ + G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 181 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ + + + R + S +S++E G+++ +I + + L P+ + Sbjct: 6 KKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQNSPSIATLEKICAALQIPIAAIF 63 >gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK +TQ+E+ ++ + LE G+ +I +A +T + ++ Sbjct: 29 NRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYNPSILLAFKIARLFETTIEEVF 86 >gi|23006264|ref|ZP_00048663.1| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase [Magnetospirillum magnetotacticum MS-1] Length = 216 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ LTQ ++ R G +QS + +E G ++++ + + LD+ + L Sbjct: 12 VGALIRGARQNRGLTQTQLAERLGTSQSAVHRIEQGSQNLSLEMLNRIGLALDSEIISLG 71 Query: 82 KP 83 P Sbjct: 72 GP 73 >gi|293377825|ref|ZP_06624010.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|292643535|gb|EFF61660.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 123 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R K+TQ+E+ ++ G + + E+GK + + LA+ D L Sbjct: 1 MFPEKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|227874832|ref|ZP_03992985.1| hypothetical protein HMPREF0577_0286 [Mobiluncus mulieris ATCC 35243] gi|298345795|ref|YP_003718482.1| hypothetical protein HMPREF0573_10669 [Mobiluncus curtisii ATCC 43063] gi|304390501|ref|ZP_07372454.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306818129|ref|ZP_07451860.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|315654474|ref|ZP_07907381.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|315657708|ref|ZP_07910589.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|227844607|gb|EEJ54763.1| hypothetical protein HMPREF0577_0286 [Mobiluncus mulieris ATCC 35243] gi|298235856|gb|ADI66988.1| hypothetical protein HMPREF0573_10669 [Mobiluncus curtisii ATCC 43063] gi|304326257|gb|EFL93502.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649093|gb|EFM46387.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|315491227|gb|EFU80845.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|315491711|gb|EFU81321.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 84 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 ++ + + F R R+ LTQ+ + + G + I+ LE+G ++ +D + Sbjct: 3 SVITRVVASDTAKFAQLVRFHRQAFGLTQQRLADMAGVTRPAITRLESGAPSVRLDTALK 62 Query: 69 LAHTLDTP 76 + L Sbjct: 63 VLDALGVE 70 >gi|254286899|ref|ZP_04961851.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|150423049|gb|EDN14998.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] Length = 181 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N +N+RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|146300851|ref|YP_001195442.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155269|gb|ABQ06123.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 121 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IR+ TQ+ + R G Q+ S++E G ST++ + + +A + + ++K Sbjct: 8 NIKIIRELKNYTQEYMALRLGITQAGYSKIEKGSSTVSFEKLEEIAQVFEMDVRNIIK 65 >gi|53715744|ref|YP_101736.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60683678|ref|YP_213822.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253566443|ref|ZP_04843896.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|255011438|ref|ZP_05283564.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|265767314|ref|ZP_06094980.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|313149255|ref|ZP_07811448.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|52218609|dbj|BAD51202.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60495112|emb|CAH09931.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|251944615|gb|EES85090.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263252619|gb|EEZ24131.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301165190|emb|CBW24760.1| putative transcriptional regulator [Bacteroides fragilis 638R] gi|313138022|gb|EFR55382.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 191 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRENKGISIEELAERSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|126173345|ref|YP_001049494.1| cupin 2 domain-containing protein [Shewanella baltica OS155] gi|152999697|ref|YP_001365378.1| cupin 2 domain-containing protein [Shewanella baltica OS185] gi|160874315|ref|YP_001553631.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|217974352|ref|YP_002359103.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|304409280|ref|ZP_07390900.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|307303638|ref|ZP_07583391.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|125996550|gb|ABN60625.1| transcriptional regulator, XRE family with cupin sensor [Shewanella baltica OS155] gi|151364315|gb|ABS07315.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS185] gi|160859837|gb|ABX48371.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|217499487|gb|ACK47680.1| transcriptional regulator, XRE family [Shewanella baltica OS223] gi|304351798|gb|EFM16196.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|306912536|gb|EFN42959.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|315266550|gb|ADT93403.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS678] Length = 182 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RK L+Q+E+ R G S IS +E + ++ ++ + + L Sbjct: 4 GASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62 >gi|53725908|ref|YP_103548.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643822|ref|ZP_00442565.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121601001|ref|YP_992298.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124383395|ref|YP_001026857.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126450501|ref|YP_001079856.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|166999969|ref|ZP_02265798.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254175449|ref|ZP_04882109.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254202232|ref|ZP_04908595.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207565|ref|ZP_04913915.1| DNA-binding protein [Burkholderia mallei JHU] gi|52429331|gb|AAU49924.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121229811|gb|ABM52329.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124291415|gb|ABN00684.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126243371|gb|ABO06464.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746479|gb|EDK53556.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751459|gb|EDK58526.1| DNA-binding protein [Burkholderia mallei JHU] gi|160696493|gb|EDP86463.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238525262|gb|EEP88690.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064084|gb|EES46270.1| DNA-binding protein [Burkholderia mallei PRL-20] Length = 187 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ + T + TG +S++S++E G S +I + L+ L + +L Sbjct: 4 RLKLLRKQKEWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60 >gi|331005212|ref|ZP_08328606.1| Transcriptional regulator, MerR family [gamma proteobacterium IMCC1989] gi|330420994|gb|EGG95266.1| Transcriptional regulator, MerR family [gamma proteobacterium IMCC1989] Length = 180 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 25/47 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + +RK L+Q+E+ R G S +S +E G+ + ++ ++ L Sbjct: 6 AVRLQKVRKIYGLSQRELAKRAGVTNSSVSMIEQGRVSPSLSSLEKL 52 >gi|323650433|gb|ADX97290.1| C.EcoNIP [Escherichia coli] Length = 78 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R + KL Q+E+ + G Q+++S+ E+G +++ + + L + ++ Sbjct: 16 LKSARIKKKLPQEELASLLGKDQTYVSKYESGIRRLDVVEVFDICKALGINMTDII 71 >gi|302562687|ref|ZP_07315029.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302480305|gb|EFL43398.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 199 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R+ +T ++ TG + S +S +ETG+ ++ ++ LA L +L Sbjct: 14 GPRLRAVRERRGVTLTDVCCATGISPSTLSRIETGRRKPTLEVVLQLAKEYGVGLDEL 71 >gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 97 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 30/54 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RK+ ++Q+E+ +R G +S I +E G ++ ++ + ++ L+TP Sbjct: 27 AAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|260583645|ref|ZP_05851393.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] gi|260158271|gb|EEW93339.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] Length = 133 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E +L+Q+E+ G +QS + E+G+ I D ++ L+ + + LL Sbjct: 7 LSELRREKRLSQEELAKIIGTSQSSVGHWESGRRNIPQDKLLQLSKYFNVSIDYLL 62 >gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] Length = 177 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + + +RKE +TQ+++ + + +S ETG + +I + LA D + Sbjct: 8 DQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSNMPDISLLAQLADFYDVSI 67 Query: 78 WKLL 81 +++ Sbjct: 68 PEII 71 >gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 214 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ + T E+ TG + S +S LE+G ++ ++ LA L L+ Sbjct: 33 VGPRLRALRRQRETTLAELSAATGISVSTLSRLESGTRRPTLEQLLPLARAHGVTLDDLV 92 >gi|229021194|ref|ZP_04177833.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|228740088|gb|EEL90446.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 108 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ ++S I E + + + +I +A + Sbjct: 2 KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE L+Q+E ++ +S +E GK +++ +A + +L Sbjct: 1 MEQLRKEMGLSQEEFARALRVSRQTVSSIENGKYNPSLELAFQIADFFQKTIEELF 56 >gi|220930162|ref|YP_002507071.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000490|gb|ACL77091.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 108 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ R+ LT++ + +++ ++E G+ ++++ +I ++ L L L+K Sbjct: 7 GKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHISLDYLIK 66 >gi|209965957|ref|YP_002298872.1| hypothetical protein RC1_2685 [Rhodospirillum centenum SW] gi|209959423|gb|ACJ00060.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 480 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 33/60 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + + R +R++ KLTQ ++ + G + S+++ +E+ + + + ++ + D L Sbjct: 4 KKAMLGHKVRRLRRDLKLTQAQMADELGISPSYLNLIESNQRPLTVPLLLKIGQIYDVDL 63 >gi|170016279|ref|YP_001723001.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804961|gb|ACA83577.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 199 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + IR+ LTQ+++ + IS E GKS I +++ +++ + L + Sbjct: 1 MLIGVKIKMIREAFDLTQEQLGKELHLTRQTISSWENGKSYPGITDILSISNKYNVSLDE 60 Query: 80 LLK 82 L+K Sbjct: 61 LMK 63 >gi|119509218|ref|ZP_01628368.1| transcriptional regulator [Nodularia spumigena CCY9414] gi|119466060|gb|EAW46947.1| transcriptional regulator [Nodularia spumigena CCY9414] Length = 538 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 + ++ R + RK +L+Q+E+ TG +QSWI ++E G+ Sbjct: 458 LQKKPRRTVKSRRKTNTISDLPGEQILQARKNLQLSQRELAKLTGKSQSWIRDVENGRLK 517 Query: 61 INIDNMIILAHTLDT 75 + ++ +L L+ Sbjct: 518 VKAEDQALLRKVLNI 532 >gi|146302466|ref|YP_001197057.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156884|gb|ABQ07738.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 132 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N IR+ + Q + + G +Q IS +ET + T++ D ++ +A L Sbjct: 11 GRNISRIRELRGMKQGALADAIGTSQQTISSIETSE-TVDFDKLVQIAKALGV 62 >gi|57233927|ref|YP_182049.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57224375|gb|AAW39432.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R LTQ+E+ ++ G + + +E GK + +++ +A P+ ++ Sbjct: 3 NKLRVLRAIHNLTQEELADKLGITRQTVIAIEWGKYSPSLELAFKIASLFKAPIEEIFT 61 >gi|115353126|ref|YP_774965.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283114|gb|ABI88631.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 269 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+EAK T E+ + ++S++E + I++ +++ +A L+ PL L++ Sbjct: 9 GQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIE 68 >gi|326390755|ref|ZP_08212308.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993149|gb|EGD51588.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKEA LTQ EI + G A++ + +E G + D + L + Sbjct: 5 LKKARKEAGLTQAEIAKKVGIARTSYTNIELGIKNPSFDVATKIKRVLRVNNDDIF 60 >gi|326330081|ref|ZP_08196394.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325952126|gb|EGD44153.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 103 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R E +T +E+ + +ISE+E G+ + + + L LD L Sbjct: 13 RRLLGEVLRAQRLERGMTLREVSAEARVSLGYISEVERGQKEASSELLASLCSALDVALS 72 Query: 79 KLLK 82 +L+ Sbjct: 73 DVLR 76 >gi|300933053|ref|ZP_07148309.1| putative transcriptional regulator ClgR [Corynebacterium resistens DSM 45100] Length = 123 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 29/75 (38%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R P R R R ++ + +E+ + + ++SE+E G+ + Sbjct: 10 PMRSDAHPVAPAQEPLLREALGATLREYRSQSGFSLRELASLASVSPGYLSEIERGRKEV 69 Query: 62 NIDNMIILAHTLDTP 76 + + + + H + Sbjct: 70 SSELLASVCHGMGIS 84 >gi|266626094|ref|ZP_06119029.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288861999|gb|EFC94297.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 102 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK L+Q+++ G ++ +++ E S N DN++ L+ + PL +L+ Sbjct: 4 LGKRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLNELV 63 >gi|311739653|ref|ZP_07713488.1| probable transcriptional regulator ClgR [Corynebacterium pseudogenitalium ATCC 33035] gi|311305469|gb|EFQ81537.1| probable transcriptional regulator ClgR [Corynebacterium pseudogenitalium ATCC 33035] Length = 120 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R + +T +E+ + ++SELE G+ ++ + + + H LD + Sbjct: 32 REALGLTLRAFRADKGVTLRELAGVARVSPGYLSELERGRKEVSSELLASVCHALDCSVS 91 Query: 79 KLL 81 +L Sbjct: 92 DVL 94 >gi|221200648|ref|ZP_03573689.1| DNA-binding protein [Burkholderia multivorans CGD2M] gi|221208477|ref|ZP_03581479.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221210397|ref|ZP_03583377.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221169353|gb|EEE01820.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221171665|gb|EEE04110.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221179220|gb|EEE11626.1| DNA-binding protein [Burkholderia multivorans CGD2M] Length = 201 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + + R +R+ K T E G ++ ++S++E G ++ ++ ++ Sbjct: 12 PTENSRSAVAAAALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAG 71 Query: 69 LAHTLDT 75 +A L Sbjct: 72 IAQALGV 78 >gi|152989688|ref|YP_001345474.1| hypothetical protein PSPA7_0078 [Pseudomonas aeruginosa PA7] gi|150964846|gb|ABR86871.1| conserved domain protein [Pseudomonas aeruginosa PA7] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK +++Q + +S++ +E G+ I ++ + +A L Sbjct: 6 KALGERIRMQRKACRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELACDPSS 65 Query: 80 LL 81 LL Sbjct: 66 LL 67 >gi|161519811|ref|YP_001583238.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343861|gb|ABX16946.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 193 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + + R +R+ K T E G ++ ++S++E G ++ ++ ++ Sbjct: 4 PTENSRSAVAAAALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAG 63 Query: 69 LAHTLDT 75 +A L Sbjct: 64 IAQALGV 70 >gi|15903016|ref|NP_358566.1| hypothetical protein spr0972 [Streptococcus pneumoniae R6] gi|116515940|ref|YP_816428.1| hypothetical protein SPD_0951 [Streptococcus pneumoniae D39] gi|148989105|ref|ZP_01820495.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|149019666|ref|ZP_01834985.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|168491958|ref|ZP_02716101.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168494498|ref|ZP_02718641.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|221231810|ref|YP_002510962.1| DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854561|ref|YP_002736073.1| hypothetical protein SPJ_1004 [Streptococcus pneumoniae JJA] gi|15458585|gb|AAK99776.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076516|gb|ABJ54236.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147925328|gb|EDK76406.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|147931041|gb|EDK82021.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|183573788|gb|EDT94316.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183575609|gb|EDT96137.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220674270|emb|CAR68810.1| putative DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225724252|gb|ACO20105.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|301794185|emb|CBW36602.1| putative DNA_binding protein [Streptococcus pneumoniae INV104] gi|332202922|gb|EGJ16990.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 73 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R++ LTQK+I F S +++E G+ T+ D ++ L++ D LL+ Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLLE 61 >gi|21223966|ref|NP_629745.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|3192004|emb|CAA19403.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + R IR++ +TQ ++ G + IS E G +++ + +A L Sbjct: 1 MPARTFSPDALRQIRRQRGVTQYKLAASLGVHNTAISHYENGHRRPDVETLATIADVLGA 60 Query: 76 PLWKLLK 82 + + Sbjct: 61 RMDDFVT 67 >gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505] gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505] Length = 146 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +RK+ + TQ+ + N+ G ++ I++ E +I + + LAH D + L Sbjct: 1 MINSNIATLRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCVRLAHVFDVSIDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|301168264|emb|CBW27854.1| putative DNA binding protein [Bacteriovorax marinus SJ] Length = 95 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + + R+ +L+Q + G +Q+ IS +E GK I + I L L Sbjct: 13 KKETAGDILKRYRESFELSQAALAELIGTSQNNISAIENGKREIGVSVAIKLCAIFPVTL 72 Query: 78 WKLLKP 83 KLL P Sbjct: 73 EKLLIP 78 >gi|260557994|ref|ZP_05830206.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260408504|gb|EEX01810.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 250 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R +R +A L QKE+ +TG QS IS+ E + D + +A L+ Sbjct: 17 GDRLRFLRTQAGLNQKELSKKTGVGQSSISDFENNVKIMAADKLAAIAKALN 68 >gi|229115222|ref|ZP_04244632.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228668362|gb|EEL23794.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 404 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGAKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|227522690|ref|ZP_03952739.1| hypothetical protein HMPREF0519_0399 [Lactobacillus hilgardii ATCC 8290] gi|227090138|gb|EEI25450.1| hypothetical protein HMPREF0519_0399 [Lactobacillus hilgardii ATCC 8290] Length = 103 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +RK +T E+ + GF+QS+I+ ET ++ N++ + + L T Sbjct: 7 GEKLRKLRKSRGITAAELSAKMGFSQSYINHFETDRAVPNVNALGEILKYLGT 59 >gi|213424691|pdb|3F51|A Chain A, Crystal Structure Of The Clp Gene Regulator Clgr From Corynebacterium Glutamicum gi|213424692|pdb|3F51|B Chain B, Crystal Structure Of The Clp Gene Regulator Clgr From Corynebacterium Glutamicum gi|213424693|pdb|3F51|C Chain C, Crystal Structure Of The Clp Gene Regulator Clgr From Corynebacterium Glutamicum gi|213424694|pdb|3F51|D Chain D, Crystal Structure Of The Clp Gene Regulator Clgr From Corynebacterium Glutamicum gi|213424695|pdb|3F51|E Chain E, Crystal Structure Of The Clp Gene Regulator Clgr From Corynebacterium Glutamicum gi|213424696|pdb|3F51|F Chain F, Crystal Structure Of The Clp Gene Regulator Clgr From Corynebacterium Glutamicum gi|213424697|pdb|3F52|A Chain A, Crystal Structure Of The Clp Gene Regulator Clgr From C. Glutamicum gi|213424698|pdb|3F52|E Chain E, Crystal Structure Of The Clp Gene Regulator Clgr From C. Glutamicum Length = 117 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R+ R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80 Query: 74 DTPLWKLL 81 + +L Sbjct: 81 GASVADVL 88 >gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 97 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 30/54 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RK+ ++Q+E+ +R G +S I +E G ++ ++ + ++ L+TP Sbjct: 27 AAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N R +RK KL+Q+++ + ++ I++ E G++ +I +L + Sbjct: 2 KNMIGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIPDIYKFKMLGDIFQVTID 61 Query: 79 KL 80 +L Sbjct: 62 QL 63 >gi|34500490|ref|NP_904261.1| hypothetical protein pUO1_12 [Delftia acidovorans] gi|319765115|ref|YP_004129051.1| hypothetical protein Alide_4472 [Alicycliphilus denitrificans BC] gi|34013311|dbj|BAC81984.1| TrbA [Delftia acidovorans] gi|317119802|gb|ADV02289.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 120 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N + E +T+KE+ NR+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSNRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56 >gi|103486719|ref|YP_616280.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976796|gb|ABF52947.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 261 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +++Q ++ + + +S +ETG+S + + +A L+ P Sbjct: 6 VGEQLREWRVRRRMSQMDLALESEISTRHLSFIETGRSRPSALMLQRIADCLEVP 60 >gi|331090730|ref|ZP_08339577.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399838|gb|EGG79497.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium 2_1_46FAA] Length = 156 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LTQ E+ G + IS E K+ +I L LD + +LL Sbjct: 14 RKEKGLTQVELAEMLGVSDKSISRWENAKTMPDISLYEPLCEALDIQVAELL 65 >gi|319935739|ref|ZP_08010169.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] gi|319809288|gb|EFW05729.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] Length = 154 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ +Q+E+ + + IS E+ + +D +LA+ + L L Sbjct: 1 MLGEKLMRLRKKHGYSQQEVADLISVTRQTISNWESDQGIPTLDKARMLANLYNVSLDDL 60 >gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15] Length = 327 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + RK A TQ+++ R G Q+ I LE S + + +A L L Sbjct: 1 MALGQRLKQARKLAGYTQEQLGERVGLTQAAIGALEKRDSQRS-NKAAEMAEALGVSLLW 59 Query: 80 LL 81 L+ Sbjct: 60 LV 61 >gi|312868622|ref|ZP_07728816.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095831|gb|EFQ54081.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK A ++Q E+ N G ++ IS E + LA L L+ Sbjct: 3 NRIRECRKAAGMSQAELGNIVGLSRQAISLYEINLRMPTFEMWECLASALHVSPAYLV 60 >gi|300742499|ref|ZP_07072520.1| toxin-antitoxin system, antitoxin component, Xre family [Rothia dentocariosa M567] gi|300381684|gb|EFJ78246.1| toxin-antitoxin system, antitoxin component, Xre family [Rothia dentocariosa M567] Length = 75 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 F R IRKE +LTQ E+ G + I ++E GK + +++ A L L Sbjct: 12 FGQRVRRIRKEERLTQLELSYMVGVSDKTIRDIERGKPGPSFGSVLKTAEVLGIYLV 68 >gi|297190852|ref|ZP_06908250.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150643|gb|EFH30705.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 275 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +L+Q E+ R G + IS +ETG+S + D ++ LA LD P+ + Sbjct: 14 LRGWRERRRLSQLELALRAGSSARHISFVETGRSRPSEDMVLRLAEHLDVPVRE 67 >gi|307726999|ref|YP_003910212.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587524|gb|ADN60921.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 303 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A+L +++ R +++ + +LE G+ + ID + LA L LL Sbjct: 21 GERLRAYRIAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLL 78 >gi|239978544|ref|ZP_04701068.1| regulatory protein [Streptomyces albus J1074] gi|291450440|ref|ZP_06589830.1| regulatory protein [Streptomyces albus J1074] gi|291353389|gb|EFE80291.1| regulatory protein [Streptomyces albus J1074] Length = 185 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +LT + R+G + ++S++E ++ ++ ++ +A L+T +L+ Sbjct: 9 VGPAVRRRRRALELTLAAVAERSGLSVPFLSQVENQRARPSLRSLEAVADALETTAVELM 68 >gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 184 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R E + + + TG + + +S++E G S ++ + LA T + L Sbjct: 7 VIGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLRALAGVFGTSVSTL 66 Query: 81 L 81 Sbjct: 67 F 67 >gi|73661421|ref|YP_300202.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493936|dbj|BAE17257.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IRKE +LTQ++ N+ ++ +S E + +I+ ++ +A T + L L+ Sbjct: 3 FGTQIKMIRKENQLTQEQFGNQLNISRQTVSTWENNRYLPDIEMLVEIAKTFNLSLDDLI 62 >gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 204 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK+ KLT + + +R+G + ++S++E +T ++ + ++ LD L Sbjct: 12 VGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGL 67 >gi|229192131|ref|ZP_04319099.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228591338|gb|EEK49189.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 114 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E + ++S + LE + ++D + +A L + L+ Sbjct: 4 FGENLKKFRSSRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63 >gi|228477619|ref|ZP_04062252.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250763|gb|EEK09961.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R RK L+Q E+ G ++ I+ +E K ++ + LA LDT L L Sbjct: 2 NHVREFRKNLGLSQLELAKSIGVSRQTINMIENNKYNPTLELCLNLAKALDTDLNSLF 59 >gi|227508801|ref|ZP_03938850.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191707|gb|EEI71774.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 88 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R+ E + + E++ R+ A LTQ E+ R Q+ I+++E G ++ Sbjct: 10 KRRDSEFNQMYEVEDEKLQTAVALYKARENAGLTQAELAERAQTTQATIAKIERGD-NVS 68 Query: 63 IDNMIILAHTLDTPLW 78 + + +AH L L Sbjct: 69 FEKLSSIAHALGKKLV 84 >gi|225571052|ref|ZP_03780069.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] gi|225160133|gb|EEG72752.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] Length = 279 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE LTQK++ + IS+ E G S +I +I LA LD +LL Sbjct: 16 MRKEKNLTQKDLAQKLDVTDKAISKWERGISCPDISLLIPLAKVLDVTTSELL 68 >gi|187934570|ref|YP_001886346.1| hypothetical protein CLL_A2157 [Clostridium botulinum B str. Eklund 17B] gi|188589133|ref|YP_001921361.1| hypothetical protein CLH_1980 [Clostridium botulinum E3 str. Alaska E43] gi|251778914|ref|ZP_04821834.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187722723|gb|ACD23944.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] gi|188499414|gb|ACD52550.1| conserved domain protein [Clostridium botulinum E3 str. Alaska E43] gi|243083229|gb|EES49119.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 23 VNNF--RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + R + +TQK++ + G ++ ++ +E G I + L L L Sbjct: 2 GRNIPIKVARAQLDMTQKQLAEKVGISRQTMNAIEQGDYNPTIKLCRAICKALGKGLDDL 61 Query: 81 L 81 Sbjct: 62 F 62 >gi|171778687|ref|ZP_02919783.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282644|gb|EDT48068.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R ++Q + + G A+ ++ +E K ++D I LA L T L L Sbjct: 2 NRVKEFRTNLGISQLTLAKQIGIARQTVNLIENNKYNPSLDLCIKLAEALGTDLNTLF 59 >gi|154252274|ref|YP_001413098.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156224|gb|ABS63441.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 117 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F RKE TQ ++ R G +++ ++ +E+G+ + + ++ LA L Sbjct: 8 KAFGRAVATRRKELGFTQADLAGRVGMSRASVANIESGRQNVLLHHVYNLASALQFSKVS 67 Query: 80 LLKP 83 L P Sbjct: 68 DLLP 71 >gi|187919345|ref|YP_001888376.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717783|gb|ACD19006.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 285 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R ++Q ++ G +Q IS +E+G+S + ++ A LD PL + Sbjct: 19 MRHWRDVRGISQLDLSFNAGVSQRHISFIESGRSVPSRQMLMDTAQALDIPLRE 72 >gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51] gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 75 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE LTQ+E+ + G +S+ ET ++ +I + L+ LD + KLL Sbjct: 2 AKNICRYRKEKGLTQEELARKLGVTFQAVSKWETAQTLPDITLLPGLSQLLDISIDKLL 60 >gi|311031854|ref|ZP_07709944.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 110 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + R++ K++ E+ R G A+S++S +E +S ++ + ++ L + Sbjct: 1 MIGERIKKYREQRKMSMSELAERAGVAKSYLSSIERNLQSNPSVQFLEKVSSVLGVNVNT 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|257088817|ref|ZP_05583178.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|256997629|gb|EEU84149.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|315160613|gb|EFU04630.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315579459|gb|EFU91650.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 76 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + LTQK + TG ++ I +E G+S + I+LA L+ L Sbjct: 12 ESLRAARIKKSLTQKRLAELTGVTETTIRNIENGRSCPSFKLSIMLAKLLNVDFETL 68 >gi|300772891|ref|ZP_07082760.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759062|gb|EFK55889.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 104 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + RK AK+TQ+++ + G +S+IS +E G S I + + L Sbjct: 44 GEMIKQERKLAKMTQEQLAEKIGAKKSFISRIENGHSDIQLSTLYKL 90 >gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] Length = 207 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R R+E LTQ E+ + G +Q I +E G T N+I +A L + Sbjct: 1 MSLASRIRQRRQELNLTQTELAEKAGISQQSIESIENG-RTKKPRNIIEIAKALQSHPEW 59 Query: 80 LL 81 LL Sbjct: 60 LL 61 >gi|153810652|ref|ZP_01963320.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174] gi|149833048|gb|EDM88130.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174] Length = 137 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +TQKE+ G ++S I E ++I +D + +A T +L+ Sbjct: 9 VGQEIKKVRYRMGMTQKELGKLIGKSESQIGAYENASASITLDVLFKIAEVTKTKPEELI 68 Query: 82 K 82 Sbjct: 69 T 69 >gi|326802631|ref|YP_004320449.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651355|gb|AEA01538.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + L+QK + G A+ ++ +E + +++ I LA LDT L L Sbjct: 2 NRLKYYRTRSGLSQKALAEEIGVARQTVNMIENDRYNPSLELCIALAKALDTDLNALF 59 >gi|325264127|ref|ZP_08130859.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324030611|gb|EGB91894.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 201 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + R + K++Q+ + ++ G ++ +++ E G S N+ LA + + + Sbjct: 1 MALSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISE 60 Query: 80 LLKP 83 L+ P Sbjct: 61 LVDP 64 >gi|304436877|ref|ZP_07396841.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370076|gb|EFM23737.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 86 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF ++ R IRKE K TQKE G + + E GK+ D +I LA D L L Sbjct: 3 IFKDHLRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLDYL 62 Query: 81 L 81 + Sbjct: 63 V 63 >gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 63 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK KLTQ E+ N G ++ I+ +E K ++ I LA L P+ L Sbjct: 3 NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYNPTLELAIKLARYLRIPVEDLF 60 >gi|293399898|ref|ZP_06644044.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306298|gb|EFE47541.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 135 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +A LTQ+ + + IS ET KS +I ++I L+ + L KLLK Sbjct: 4 GVKLKEARLQAGLTQENVAEEIQVTRQTISNWETEKSFPDIVSVIKLSTLYNISLDKLLK 63 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R L+ +++ G +Q+ IS+ E G T + +I LA LD Sbjct: 1 MSIGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSF 60 Query: 80 LLKP 83 L+P Sbjct: 61 FLRP 64 >gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +R LTQKE+ ++G + I E G + + + + ++ LD + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|223985950|ref|ZP_03635985.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] gi|223962074|gb|EEF66551.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] Length = 94 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 29/77 (37%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + + + F + R ++TQ+E+ + G ++ I +LE + ++ Sbjct: 13 PLKSKKGGEPMASNKYRFESKIHVYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSML 72 Query: 65 NMIILAHTLDTPLWKLL 81 + +A + L Sbjct: 73 LVYNIAKVFGVTIEDLF 89 >gi|152996614|ref|YP_001341449.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150837538|gb|ABR71514.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 203 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Query: 6 RDEPHLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 R + A +R + + IR T +E+ RTG A+S +S++E + + Sbjct: 4 RPSLETATASDPDRFVEPLELGKRVKEIRLSKGWTLEEVGKRTGIARSTLSKIENDQVSP 63 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + L + L+ L +L Sbjct: 64 SFTIVQKLINGLEMDLPQLF 83 >gi|148545072|ref|YP_001272442.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|227364226|ref|ZP_03848322.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683429|ref|ZP_08162945.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532106|gb|ABQ84105.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|227070771|gb|EEI09098.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977779|gb|EGC14730.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 63 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R RK+ KL+Q E+ G A+ I+ +E K + + LAH L T L L Sbjct: 2 NNVRKYRKQQKLSQLELAKEIGVARQTINLIENDKYNPTLGLCLNLAHALHTDLNSLF 59 >gi|323141521|ref|ZP_08076407.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413980|gb|EFY04813.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 30/59 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + +R + + Q E+ G +Q+ +S +E+G++ + ++N++ + + + Sbjct: 4 QVDYKAVGLRIKTLRLKNNIYQTELAKNIGVSQTHMSNIESGRAGLTLENLVKMTNIFN 62 >gi|313638392|gb|EFS03596.1| helix-turn-helix XRE-family like protein [Listeria seeligeri FSL S4-171] Length = 167 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75 M + R +RK +TQKE+ G+ A I++ ETG T ID + +A L+ Sbjct: 1 MSVGSRIRRVRKFRDMTQKELGIALGYDEKSADVRITQYETGTRTPKIDVLNAMAEVLNV 60 Query: 76 PLWKLLKP 83 + L +P Sbjct: 61 NVLSLKEP 68 >gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 108 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R + ++Q E+ + S IS+ E G + +ID + LA + L+ Sbjct: 3 FSVRLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDYLI 62 >gi|229096267|ref|ZP_04227240.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|228687227|gb|EEL41132.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 405 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L LL Sbjct: 5 LGAKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] Length = 102 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + RK+ KLT E+ R G +Q S LE G I +D +I +++ L L Sbjct: 7 IVGQRIKQKRKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGISPQSL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|253991747|ref|YP_003043103.1| hypothetical protein PAU_04275 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638522|emb|CAR67143.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783197|emb|CAQ86362.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 82 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R R +TQ+ + QS+I+++E G+ ++I + +AH L Sbjct: 8 EYQVVIKALREARIAKGVTQENLAQALDRPQSFIAKVENGERRLDIVEFVHIAHLLSLEP 67 Query: 78 WKLLK 82 L+K Sbjct: 68 SVLIK 72 >gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E L+D +R I R +R E + E+ +G +++ +S LE + + + Sbjct: 2 ETTLTDDNAIDRRI-AQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAVSPTANVLG 60 Query: 68 ILAHTLDTPLWKLL 81 L P+ +L+ Sbjct: 61 KLCVAYGLPMSRLM 74 >gi|167758243|ref|ZP_02430370.1| hypothetical protein CLOSCI_00581 [Clostridium scindens ATCC 35704] gi|167664140|gb|EDS08270.1| hypothetical protein CLOSCI_00581 [Clostridium scindens ATCC 35704] Length = 134 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E F N +R + L+Q EI + G QS + ETG I + ++ L+ Sbjct: 12 EYERFGRNLAAMRNKLGLSQYEISEKLGMLQSTYAGYETGTRKIPLSVIVQLSKFFGVEA 71 Query: 78 WKLL 81 L+ Sbjct: 72 DVLI 75 >gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] Length = 224 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RK LTQ+++ R G ++ +S +ETGK+ ++ N IL L+ L Sbjct: 1 MTGDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWL 60 >gi|187477472|ref|YP_785496.1| transcriptional regulator [Bordetella avium 197N] gi|115422058|emb|CAJ48581.1| putative transcriptional regulator [Bordetella avium 197N] Length = 188 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 32/71 (45%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +++ I + R R+ + E+ +R+G +++ IS++E +++ + L+ Sbjct: 1 MNNPIPDPSIAIATRLRIEREARGWSLGELADRSGVSKAMISKIERCEASPTATILGKLS 60 Query: 71 HTLDTPLWKLL 81 L LL Sbjct: 61 GAFGLQLSMLL 71 >gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +R LTQKE+ ++G + I E G + + + + ++ LD + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|268610412|ref|ZP_06144139.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 252 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 28/54 (51%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + ++Q+++ + + +S ETG++ N + + +L+ D + LL Sbjct: 9 ELRNKKGMSQEQLAEKVFVTRQAVSRWETGETQPNTETLKLLSQLFDVSINTLL 62 >gi|269798774|ref|YP_003312674.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|282849601|ref|ZP_06258985.1| DNA-binding protein [Veillonella parvula ATCC 17745] gi|294792537|ref|ZP_06757684.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|269095403|gb|ACZ25394.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] gi|282580538|gb|EFB85937.1| DNA-binding protein [Veillonella parvula ATCC 17745] gi|294456436|gb|EFG24799.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 91 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 27/45 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R++ +TQ ++ +++G AQS+IS+LE+G + + + L Sbjct: 27 RRQLGMTQYQLADKSGLAQSYISDLESGAVDPRWSTIYRVVYGLG 71 >gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 122 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ TQ+E+ G ++ +S E + + + + LA D + L+ Sbjct: 3 YGERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLI 62 >gi|152964472|ref|YP_001360256.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151358989|gb|ABS01992.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 194 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 D R+ R R+ LT + +G ++ + +LE G S + + L Sbjct: 6 SDDTAFTARL--AQVLRAARQARGLTTAALAQASGVSRGSVVKLERGDSQPSAALLGRLC 63 Query: 71 HTLDTPLWKLL 81 L L +L Sbjct: 64 GPLGLTLSELF 74 >gi|118444284|ref|YP_879117.1| LacI/xre family transcriptional regulator [Clostridium novyi NT] gi|118134740|gb|ABK61784.1| Predicted transcriptional regulator, lacI/xre family [Clostridium novyi NT] Length = 221 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ R +A +T+K++ + G A+ +I E+E+GK IN M ++ L L Sbjct: 4 VGSKIRDARLKANMTEKQLAKKIGVAEKFIKEVESGKKVINESVMEKISKVLGKDL 59 >gi|86741461|ref|YP_481861.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86568323|gb|ABD12132.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 250 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + R + R R T +++ + + ++SE+E G + + + + Sbjct: 5 DDAEMPLLRRLVGQALRRRRLAQGRTLRDVADAARVSTPYLSEIERGLKEASSEILAAVC 64 Query: 71 HTLDTPLWKLL 81 L L LL Sbjct: 65 RALHIRLSDLL 75 >gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 359 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE KLTQ+E+ G + +S+ E G S +I + LA L+T + LL Sbjct: 7 GETILKLRKERKLTQEELALMIGISAGAVSKWENGNSMPDISILAPLARALNTSIDTLL 65 >gi|322384025|ref|ZP_08057752.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151372|gb|EFX44562.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 210 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 I IF +N +RK LTQ ++ G S +S+ E K + L+ Sbjct: 2 DDKKIQ---EIFASNINKLRKSKSLTQSDLAKILGVGVSTVSDWEKAKKYPRAGVIEKLS 58 Query: 71 HTLDTP 76 P Sbjct: 59 QHFGIP 64 >gi|317491327|ref|ZP_07949763.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920874|gb|EFV42197.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSHIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|307265009|ref|ZP_07546570.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919994|gb|EFN50207.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 74 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK+A LTQ EI + G A++ + +E G + + + L + Sbjct: 5 LKKIRKQAGLTQAEIAKKVGIARTSYTNIELGIKNPSFNVATKIKKVLGVNNDDIF 60 >gi|317051592|ref|YP_004112708.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316946676|gb|ADU66152.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 147 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 26/51 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R+ L Q + G + + IS++E G ID +I +A+T++ Sbjct: 6 RRMKELREGLNLNQVKFAKLLGTSNTIISDIERGSRNPTIDLLIKIANTVE 56 >gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314] gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314] Length = 138 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTL 73 R IRK +Q+E+ +++ IS LE ++ + + L+ L Sbjct: 21 HTLGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWAL 80 Query: 74 DTPLWKLL 81 D P LL Sbjct: 81 DVPPAALL 88 >gi|255692407|ref|ZP_05416082.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260621875|gb|EEX44746.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 101 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +++ KE K+T + G Q +S + GKST +++ + +A L+ + +L P Sbjct: 4 RIKDVLKEKKVTVVSLAGMIGITQPNMSNIVNGKSTPSLETLEKIASALEVDITELFGP 62 >gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R E ++Q E+ R+G+ ++S I+++E G + + + +A L + LL Sbjct: 17 GNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGINDVPQSKIKAIAEALGVSVGTLL 76 >gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 185 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + + +RK +TQ ++ + ++ +S ETG++ ++ + LA + Sbjct: 4 LSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDD 63 Query: 80 LL 81 L+ Sbjct: 64 LI 65 >gi|171316971|ref|ZP_02906178.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097895|gb|EDT42715.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 218 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + ER+ R++R T + R G ++S IS +E ++ + LA Sbjct: 9 DDTGINERI--ARRVRDLRTLRGYTLDALAARCGVSRSMISLIERASASPTAVVLDKLAA 66 Query: 72 TLDTPLWKLL 81 L L L Sbjct: 67 GLGVSLAGLF 76 >gi|90592588|ref|YP_529848.1| putative transcriptional regulator [Lactobacillus phage KC5a] gi|89891917|gb|ABD78790.1| putative transcriptional regulator [Lactobacillus phage KC5a] Length = 117 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R E LT +E+ + G S +S+ ET K +D LA + P+ LL Sbjct: 3 NRLKELRHEKNLTLRELGEKVGMRNSTLSQYETNKREPKLDTWQKLADFFNVPVDYLL 60 >gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] Length = 128 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + IL+ + + +R EA LTQKE+ +Q I+ E G ++ LA+ Sbjct: 9 NIILKGTTMLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANV 68 Query: 73 LDTPLWKLL 81 + LL Sbjct: 69 FNVSTDYLL 77 >gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 474 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +RKE LTQ + G + S+I+++E + + + + Sbjct: 6 VGSRLRQLRKERDLTQAALAELLGISASYINQIEHDVRPLTPQVLRKITASFGV 59 >gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311] gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311] Length = 239 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+ LTQ+++ + + IS ETG+ N D + L+ + + Sbjct: 6 KFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYEISIND 65 Query: 80 LL 81 Sbjct: 66 FF 67 >gi|326330980|ref|ZP_08197279.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] gi|325951191|gb|EGD43232.1| toxin-antitoxin system, antitoxin component, Xre family [Nocardioidaceae bacterium Broad-1] Length = 268 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ L+Q + + + +S +E G++ + ++ LA L P+ + Sbjct: 18 VGSELRRWRELRSLSQLALATQAEVSTRHVSYVENGRARPTPEMIVRLAEVLRVPMAE 75 >gi|309808081|ref|ZP_07701999.1| replication initiation factor [Lactobacillus iners LactinV 01V1-a] gi|308168683|gb|EFO70783.1| replication initiation factor [Lactobacillus iners LactinV 01V1-a] Length = 401 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|325680567|ref|ZP_08160110.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107704|gb|EGC01977.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 102 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R++ K++ + TG + I +E G I+ + LA L + L ++ Sbjct: 3 VGKKLHKLREDKKMSMYRLTQLTGVSGHHIKGIEEGTRQPTIETLNRLAVALGSSLAEMF 62 >gi|283470181|emb|CAQ49392.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] Length = 401 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 469 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +R+E L+Q + G + S+++++E + + ++ + Sbjct: 3 KTYVGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 59 >gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R+ RK TQ+ + ++ G + S++ LE G T + +A TL +L Sbjct: 6 LGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGTRTPTEPVLRKIASTLQVDYDEL 64 >gi|169334606|ref|ZP_02861799.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis DSM 17244] gi|169259323|gb|EDS73289.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis DSM 17244] Length = 102 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 27/52 (51%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IRK+ +Q+E + + IS ETG+++ +I+ I +A L +L Sbjct: 2 IRKKEGYSQEEAAEKLNVTRQTISNWETGQTSPSIEQSISIAKLYKISLDEL 53 >gi|22537094|ref|NP_687945.1| Tn916, transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|69247638|ref|ZP_00604432.1| Helix-turn-helix motif:Replication initiation factor [Enterococcus faecium DO] gi|69249686|ref|ZP_00605030.1| Helix-turn-helix motif:Replication initiation factor [Enterococcus faecium DO] gi|77411088|ref|ZP_00787441.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|146318584|ref|YP_001198296.1| Tn916, transcriptional regulator, [Streptococcus suis 05ZYH33] gi|146320783|ref|YP_001200494.1| Tn916, transcriptional regulator [Streptococcus suis 98HAH33] gi|182683132|ref|YP_001834879.1| Tn916, transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|210616542|ref|ZP_03291124.1| hypothetical protein CLONEX_03345 [Clostridium nexile DSM 1787] gi|221232076|ref|YP_002511229.1| conjugative transposon replication initiation factor [Streptococcus pneumoniae ATCC 700669] gi|225856798|ref|YP_002738309.1| transcriptional regulator, Cro/CI family [Streptococcus pneumoniae P1031] gi|225861751|ref|YP_002743260.1| transcriptional regulator, Cro/CI family [Streptococcus pneumoniae Taiwan19F-14] gi|227484753|ref|ZP_03915069.1| replication initiation protein [Anaerococcus lactolyticus ATCC 51172] gi|227554323|ref|ZP_03984370.1| replication initiation protein [Enterococcus faecalis HH22] gi|228477742|ref|ZP_04062371.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|229546625|ref|ZP_04435350.1| replication initiation protein [Enterococcus faecalis TX1322] gi|253751708|ref|YP_003024849.1| replication initiation factor [Streptococcus suis SC84] gi|253755114|ref|YP_003028254.1| replication initiation factor [Streptococcus suis BM407] gi|253755578|ref|YP_003028718.1| replication initiation factor [Streptococcus suis BM407] gi|255974486|ref|ZP_05425072.1| transcriptional regulator [Enterococcus faecalis T2] gi|256763495|ref|ZP_05504075.1| transcriptional regulator [Enterococcus faecalis T3] gi|257077695|ref|ZP_05572056.1| transcriptional regulator [Enterococcus faecalis JH1] gi|257086311|ref|ZP_05580672.1| transcriptional regulator [Enterococcus faecalis D6] gi|257090946|ref|ZP_05585307.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257417714|ref|ZP_05594708.1| transcriptional regulator [Enterococcus faecalis AR01/DG] gi|257868782|ref|ZP_05648435.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|258616908|ref|ZP_05714678.1| Tn5251 transcriptional regulator Cro/CI family protein [Enterococcus faecium DO] gi|260562507|ref|ZP_05833016.1| transcriptional regulator [Enterococcus faecium C68] gi|270293240|ref|ZP_06199451.1| putative , transcriptional regulator [Streptococcus sp. M143] gi|288905889|ref|YP_003431111.1| transcriptional regulator, Cro/CI family (Tn916) [Streptococcus gallolyticus UCN34] gi|289422761|ref|ZP_06424600.1| transcriptional regulator, Cro/CI family [Peptostreptococcus anaerobius 653-L] gi|289450523|ref|YP_003475491.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|293563931|ref|ZP_06678350.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|296451796|ref|ZP_06893518.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296881126|ref|ZP_06905062.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|297587359|ref|ZP_06946004.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|300814603|ref|ZP_07094854.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300861585|ref|ZP_07107669.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|302379650|ref|ZP_07268135.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|306832053|ref|ZP_07465207.1| cro/CI family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306834396|ref|ZP_07467513.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|307269829|ref|ZP_07551159.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307272346|ref|ZP_07553603.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307275123|ref|ZP_07556277.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307284023|ref|ZP_07564193.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307289432|ref|ZP_07569385.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|309803154|ref|ZP_07697251.1| replication initiation factor [Lactobacillus iners LactinV 11V1-d] gi|309806369|ref|ZP_07700382.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|309809994|ref|ZP_07703842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312873865|ref|ZP_07733908.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|312952193|ref|ZP_07771071.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|313884186|ref|ZP_07817952.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|313890998|ref|ZP_07824619.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313891726|ref|ZP_07825331.1| DNA-binding helix-turn-helix protein [Dialister microaerophilus UPII 345-E] gi|314948663|ref|ZP_07852037.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317495450|ref|ZP_07953819.1| replication initiation factor [Gemella moribillum M424] gi|319893409|ref|YP_004150284.1| Tn916-associated transcriptional regulator [Staphylococcus pseudintermedius HKU10-03] gi|322376612|ref|ZP_08051105.1| putative , transcriptional regulator [Streptococcus sp. M334] gi|322385335|ref|ZP_08058980.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|322392758|ref|ZP_08066217.1| cro/CI family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|325846333|ref|ZP_08169323.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325911706|ref|ZP_08174113.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|329122035|ref|ZP_08250644.1| cro/CI family transcriptional regulator [Dialister micraerophilus DSM 19965] gi|331267226|ref|YP_004326856.1| Tn916, transcriptional regulator, putative [Streptococcus oralis Uo5] gi|22533954|gb|AAM99817.1|AE014234_7 Tn916, transcriptional regulator, putative [Streptococcus agalactiae 2603V/R] gi|68194098|gb|EAN08639.1| Helix-turn-helix motif:Replication initiation factor [Enterococcus faecium DO] gi|68194756|gb|EAN09235.1| Helix-turn-helix motif:Replication initiation factor [Enterococcus faecium DO] gi|77162811|gb|EAO73769.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|145689390|gb|ABP89896.1| Tn916, transcriptional regulator, putative [Streptococcus suis 05ZYH33] gi|145691589|gb|ABP92094.1| Tn916, transcriptional regulator, putative [Streptococcus suis 98HAH33] gi|182628466|gb|ACB89414.1| Tn916, transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|183217323|gb|ACC59242.1| relaxase [Streptococcus pneumoniae] gi|210149753|gb|EEA80762.1| hypothetical protein CLONEX_03345 [Clostridium nexile DSM 1787] gi|220674537|emb|CAR69099.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae ATCC 700669] gi|225725890|gb|ACO21742.1| transcriptional regulator, Cro/CI family [Streptococcus pneumoniae P1031] gi|225726728|gb|ACO22579.1| transcriptional regulator, Cro/CI family [Streptococcus pneumoniae Taiwan19F-14] gi|227176533|gb|EEI57505.1| replication initiation protein [Enterococcus faecalis HH22] gi|227237275|gb|EEI87290.1| replication initiation protein [Anaerococcus lactolyticus ATCC 51172] gi|228250631|gb|EEK09842.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|229308257|gb|EEN74244.1| replication initiation protein [Enterococcus faecalis TX1322] gi|251815997|emb|CAZ51614.1| replication initiation factor [Streptococcus suis SC84] gi|251817578|emb|CAZ55325.1| replication initiation factor [Streptococcus suis BM407] gi|251818042|emb|CAZ55832.1| replication initiation factor [Streptococcus suis BM407] gi|255967358|gb|EET97980.1| transcriptional regulator [Enterococcus faecalis T2] gi|256684746|gb|EEU24441.1| transcriptional regulator [Enterococcus faecalis T3] gi|256985725|gb|EEU73027.1| transcriptional regulator [Enterococcus faecalis JH1] gi|256994341|gb|EEU81643.1| transcriptional regulator [Enterococcus faecalis D6] gi|256999758|gb|EEU86278.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257159542|gb|EEU89502.1| transcriptional regulator [Enterococcus faecalis ARO1/DG] gi|257802946|gb|EEV31768.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|259906627|gb|ACW84401.1| relaxase [Streptococcus pneumoniae] gi|260073107|gb|EEW61453.1| transcriptional regulator [Enterococcus faecium C68] gi|270279219|gb|EFA25065.1| putative , transcriptional regulator [Streptococcus sp. M143] gi|288732615|emb|CBI14187.1| putative transcriptional regulator, Cro/CI family (Tn916) [Streptococcus gallolyticus UCN34] gi|289156816|gb|EFD05442.1| transcriptional regulator, Cro/CI family [Peptostreptococcus anaerobius 653-L] gi|289185070|gb|ADC91495.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|291604115|gb|EFF33630.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|296259354|gb|EFH06227.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296427876|gb|EFH13787.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|297575340|gb|EFH94059.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|300511222|gb|EFK38471.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300849046|gb|EFK76799.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|302312557|gb|EFK94553.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|304423569|gb|EFM26718.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304425492|gb|EFM28610.1| cro/CI family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306499609|gb|EFM68973.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306503394|gb|EFM72643.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306508241|gb|EFM77357.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306510985|gb|EFM79998.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306513939|gb|EFM82541.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|308164662|gb|EFO66912.1| replication initiation factor [Lactobacillus iners LactinV 11V1-d] gi|308167353|gb|EFO69519.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|308169782|gb|EFO71827.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|310629849|gb|EFQ13132.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|311090647|gb|EFQ49048.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|312620633|gb|EFR32056.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|313119720|gb|EFR42907.1| DNA-binding helix-turn-helix protein [Dialister microaerophilus UPII 345-E] gi|313120622|gb|EFR43740.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313644916|gb|EFS09496.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315027162|gb|EFT39094.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315032840|gb|EFT44772.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315146391|gb|EFT90407.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315154516|gb|EFT98532.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315154991|gb|EFT99007.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315158711|gb|EFU02728.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315163463|gb|EFU07480.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315165389|gb|EFU09406.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315174511|gb|EFU18528.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315575435|gb|EFU87626.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582870|gb|EFU95061.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|316914509|gb|EFV35986.1| replication initiation factor [Gemella moribillum M424] gi|317163105|gb|ADV06648.1| Tn916-associated transcriptional regulator [Staphylococcus pseudintermedius HKU10-03] gi|321144396|gb|EFX39798.1| cro/CI family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321157340|emb|CBW39321.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] gi|321157430|emb|CBW39408.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] gi|321270594|gb|EFX53509.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321282419|gb|EFX59426.1| putative , transcriptional regulator [Streptococcus sp. M334] gi|325476472|gb|EGC79631.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325481597|gb|EGC84636.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325688802|gb|EGD30810.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK115] gi|326683898|emb|CBZ01516.1| Tn916, transcriptional regulator, putative [Streptococcus oralis Uo5] gi|327467087|gb|EGF12599.1| cro/CI family transcriptional regulator [Dialister micraerophilus DSM 19965] gi|327474116|gb|EGF19526.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] gi|329577624|gb|EGG59056.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 401 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium ljungdahlii DSM 13528] gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 344 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++++ F RKE LTQKE+ + ++S +S+ E G S +I ++ + L Sbjct: 1 MKDKAAFGKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGISYPDISLILSICDALKI 60 Query: 76 PLWKLLK 82 +L+ Sbjct: 61 SEHELIT 67 >gi|288560583|ref|YP_003424069.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543293|gb|ADC47177.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 189 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E F ++IR+ +++ +E+ ++G + +E G+ ++ + +A L L Sbjct: 3 ENKKFAQKVKDIRERQQMSIEELAEKSGVKLEVLQAMENGEIIPSLTPLTKMAKALGVRL 62 >gi|284929123|ref|YP_003421645.1| hypothetical protein UCYN_05600 [cyanobacterium UCYN-A] gi|284809582|gb|ADB95287.1| 4Fe-4S protein,Helix-turn-helix protein [cyanobacterium UCYN-A] Length = 532 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 36/72 (50%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+K+ + + + + + + RK+ L+Q+ + + G +QSWI +LE G+ + Sbjct: 460 RKKQQKNSQKNRVKKSSQLSAEKIQYARKKKGLSQRALAKQVGKSQSWIRDLEKGRCSAK 519 Query: 63 IDNMIILAHTLD 74 ++ L L+ Sbjct: 520 AEDRENLQSILE 531 >gi|255324440|ref|ZP_05365557.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] gi|255298346|gb|EET77646.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +L+Q E+ ++ G ++ I+ +E G + ++ + + H L + ++ Sbjct: 8 VRKWRRWLELSQAELADKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIF 63 >gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 188 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R+E + TG +++ + ++E G+S+ + + +A L+ ++ Sbjct: 10 GDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGLNVAFSTFIE 69 Query: 83 P 83 P Sbjct: 70 P 70 >gi|257063582|ref|YP_003143254.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791235|gb|ACV21905.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 76 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I +R + +R+E ++Q+ + + ++ +E+G + I ++ +A LD Sbjct: 9 IESKRKL-GVRIAKLREEKGMSQRRLALVLELDRVTLNRIESGTANPTISTLMRIADGLD 67 Query: 75 TPLWKLL 81 +L Sbjct: 68 VAFEELF 74 >gi|152965402|ref|YP_001361186.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151359919|gb|ABS02922.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 232 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R + T E+ +G + ++S LE ++T ++ ++ L TLD + L + Sbjct: 44 GSRLRAARLAQRRTVAEVAEASGLTKGFLSRLERDRATASVAALVRLCATLDLAVGSLFE 103 Query: 83 P 83 P Sbjct: 104 P 104 >gi|161598530|ref|YP_001573911.1| hypothetical protein pEDINA_p39 [Staphylococcus aureus] gi|27531763|dbj|BAC54531.1| unnamed protein product [Staphylococcus aureus] gi|282166102|gb|ADA80122.1| hypothetical protein SAP099B_021 [Staphylococcus aureus] Length = 64 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEDIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|91790200|ref|YP_551152.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91699425|gb|ABE46254.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 197 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +L+ ++ R G ++S +S++E ++ + + LA L + L Sbjct: 16 VGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDFL 75 >gi|71065694|ref|YP_264421.1| DNA-binding protein [Psychrobacter arcticus 273-4] gi|71038679|gb|AAZ18987.1| probable DNA binding protein, helix turn helix motif [Psychrobacter arcticus 273-4] Length = 101 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + R LTQ + + G S ++ +E+G+ +DN+I LA L Sbjct: 15 KILGERLKTQRLALNLTQAALAEKAGIGVSTVARIESGQ-GGTLDNIIRLAMALGMVH 71 >gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 200 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E +L+Q+E+ R S IS +E + ++ ++ + L + Sbjct: 7 VGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSVSPSVSSLKKILDALPVSI 62 >gi|297342817|gb|ADI33756.1| control protein [Shigella boydii] Length = 75 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +TQK + G QS+IS+ ETG+ I+ +I + + L P + L+ Sbjct: 18 RKRIGVTQKMLSEALGKPQSYISKYETGERRIDAIELIDICNELGVPFYNLI 69 >gi|271969009|ref|YP_003343205.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512184|gb|ACZ90462.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 271 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +++Q ++ +T + +S +ETG+S + D ++ LA LD PL + Sbjct: 14 VGELLRQWRERRRMSQMDLAIQTDISTRHLSFVETGRSKPSRDMILRLAEELDLPLRE 71 >gi|254563686|ref|YP_003070781.1| transcriptional regulator [Methylobacterium extorquens DM4] gi|254270964|emb|CAX26969.1| putative transcriptional regulator [Methylobacterium extorquens DM4] Length = 71 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 L+Q+ + G ++++ LE +D + +A L PL +L Sbjct: 2 AQNLSQERLAADAGVDRAYLGGLERQAENPTVDLLDKVAEALAVPLGELF 51 >gi|218896717|ref|YP_002445128.1| DNA-binding protein [Bacillus cereus G9842] gi|218542568|gb|ACK94962.1| DNA-binding protein [Bacillus cereus G9842] Length = 404 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ + +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGAKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|163840394|ref|YP_001624799.1| trancriptional regulator, PopR-like protein [Renibacterium salmoninarum ATCC 33209] gi|162953870|gb|ABY23385.1| trancriptional regulator, PopR-like protein [Renibacterium salmoninarum ATCC 33209] Length = 123 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R+ T E+ G + ++SE+E G+ + + + + L L Sbjct: 7 RSVHGKILRRARQRQGKTLGEVAQTAGISMQYLSEIERGRKEPSSEILAAVCRALGWSLL 66 Query: 79 KL 80 L Sbjct: 67 NL 68 >gi|126665063|ref|ZP_01736046.1| hypothetical protein MELB17_18384 [Marinobacter sp. ELB17] gi|126630433|gb|EBA01048.1| hypothetical protein MELB17_18384 [Marinobacter sp. ELB17] Length = 96 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N +R A LTQ+++ R G A+ IS LE GK + + A+ Sbjct: 31 NQLITMRTSAGLTQEQLAKRIGTAKGNISRLERGKGNPSWATLEKYANACG 81 >gi|88607013|ref|YP_505749.1| DNA-binding protein [Anaplasma phagocytophilum HZ] gi|35057062|gb|AAN15209.1| putative transcriptional regulator [Anaplasma phagocytophilum] gi|88598076|gb|ABD43546.1| DNA-binding protein [Anaplasma phagocytophilum HZ] Length = 183 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + + + R ++Q ++ +R G + + E G + I I + LA Sbjct: 21 AKPHPVD-EYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELAR 79 Query: 72 TLDTPLWKLL 81 L + L+ Sbjct: 80 VLGIEINDLM 89 >gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R++ LT +++ +TG ++ ++S++E K + + LA L L + Sbjct: 19 GNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALGHFFQ 78 >gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ N R E TQ+E+ R G ++ I+ LE K ++ +A+ + P+ Sbjct: 3 LLLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITD 62 Query: 80 LL 81 + Sbjct: 63 VF 64 >gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03] gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 70 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ L+Q + R A+ I+ +E K ++D + LAH LDT L L Sbjct: 8 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 65 >gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 328 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + ++RK+A +Q+E+ + ++ IS+ E ++ +++ ++ LA Sbjct: 1 MILADKILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAIPDLEKILDLARIFGVTTDY 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 157 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE KLTQKE+ ++ ++ + E G+ I D LA + LL Sbjct: 2 NRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKPDKAQQLADFFGVSVGYLL 59 >gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 224 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +RK LTQ E G + ++SE E GK + + + L+ + L Sbjct: 1 MLNQRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQGKKVPGGEILRRICEKLNANINWL 60 Query: 81 LK 82 L Sbjct: 61 LT 62 >gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 76 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK LTQ E+ G + I+ +E + ++ LA L T + +L Sbjct: 16 NKIKQFRKRLGLTQNELAAECGVTRQTINCVENNRYDPTLELAFKLAKILQTKVDELF 73 >gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family [Rhizobium etli Kim 5] Length = 189 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|196251156|ref|ZP_03149833.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209320|gb|EDY04102.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 136 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 F + R R++ + +++ +TG + +++ LE G + +I +A L PL L Sbjct: 12 FGSTLRYWREKRGYSLQQLYEKTGVSAGYLNRLEKGERRAPSIPIASKIAEALGIPLSLL 71 Query: 81 L 81 L Sbjct: 72 L 72 >gi|83950958|ref|ZP_00959691.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM] gi|83838857|gb|EAP78153.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM] Length = 199 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ L+Q+E+ R+G QS IS++E+ + + ++ LAH LD L Sbjct: 12 LREARENKGLSQRELSKRSGVPQSHISKIESNNVDLRLSSLASLAHALDLEL 63 >gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 117 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RKE K+TQ+++ G +QS I +E + + D +I LA+TL+T + L Sbjct: 1 MLGDKVKLLRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|325919786|ref|ZP_08181781.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] gi|325549742|gb|EGD20601.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] Length = 113 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTL 73 R+IF N R+ R++A+LTQ+ + G A++ I+ E G + ++ LA L Sbjct: 6 ARLIFANRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADAL 65 Query: 74 DTPL 77 PL Sbjct: 66 GMPL 69 >gi|311899729|dbj|BAJ32137.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 282 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P D +F + R IR EA L+Q + G+ S + ++ET K + + Sbjct: 4 PRDLDPAASMAALFGSELRRIRAEANLSQDALGEVLGYTGSLVGQIETAKRSPTQEFAER 63 Query: 69 LAHTLDT 75 L L T Sbjct: 64 LDGALAT 70 >gi|291530057|emb|CBK95642.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 79 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R N IRKE + Q+E+ ++ I LE G+ +I LA + Sbjct: 6 SIERRRTVKNRLEEIRKERGIKQEELAAALEVSRQTIGSLENGRYNPSIILAFKLARYFN 65 Query: 75 TPLWKLL 81 + + Sbjct: 66 MSIEDIF 72 >gi|271964091|ref|YP_003338287.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM 43021] gi|270507266|gb|ACZ85544.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM 43021] Length = 430 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R++ L+Q ++ + + S++S +E+GK T + +LA LD L L Sbjct: 6 LVGQRIKTVRRQRGLSQAQLAH-PELSDSYVSLIESGKRTPTPSVLELLAEKLDCSLTYL 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|270262060|ref|ZP_06190332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043936|gb|EFA17028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 200 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I + + RK+ KLT E+ + G ++ + E+E G + +I + +A L Sbjct: 15 IQTVNEAVSSTIKQHRKDKKLTLDELSRKAGVSKGMLVEIEKGTANPSIAILCKIAAALG 74 Query: 75 TPLWKLL 81 + ++ Sbjct: 75 LSVADIV 81 >gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 175 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 24/50 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R + +Q+++ TG + I +E G++ +++ LA + Sbjct: 3 VRKLRLKRGWSQEQLAELTGVSTRTIQRIERGQTKPSLETQKSLAAVFEV 52 >gi|206564567|ref|YP_002235330.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198040607|emb|CAR56593.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 192 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ ++ ++ +AH L Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 69 >gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC 15579] Length = 220 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + LTQK++ + G A+S+I+E+E+G+ IN M ++ L Sbjct: 7 KIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGK 57 >gi|169335627|ref|ZP_02862820.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] gi|169258365|gb|EDS72331.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] Length = 229 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N +R+E +Q+ + + G ++ +S+ E + +ID ++ L+ P Sbjct: 1 MTIGNKIMTLRRENNFSQEILAEKLGVSRQAVSKWEAEQCLPDIDKIVKLSELFSVPTDY 60 Query: 80 LLK 82 +LK Sbjct: 61 ILK 63 >gi|167757904|ref|ZP_02430031.1| hypothetical protein CLOSCI_00235 [Clostridium scindens ATCC 35704] gi|167664558|gb|EDS08688.1| hypothetical protein CLOSCI_00235 [Clostridium scindens ATCC 35704] Length = 114 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N R + KLTQ E+ + ++ +LE ++ + D + + ++ Sbjct: 8 FGIMLKNARMDKKLTQAELAEILDISLPYLKDLERFRNNPSYDVFEKVIRYFNLSADTVI 67 Query: 82 KP 83 P Sbjct: 68 YP 69 >gi|167032796|ref|YP_001668027.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859284|gb|ABY97691.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 184 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK LT E+ R G + ++S++E G S + ++ ++ L +KL K Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|20092778|ref|NP_618853.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A] gi|19918074|gb|AAM07333.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A] Length = 67 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R LTQ+ + + G + I+ +E GK ++D L+ + + Sbjct: 3 NNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIF 60 >gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 328 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK++ +Q+E+ + ++ IS+ E +S +D ++ L+ Sbjct: 1 MILADKIILLRKKSGWSQEELAEKLNVSRQSISKWEGAQSVPGMDKILQLSEIFGVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] Length = 231 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R +R + E+ G + IS LETGK + + LA L + L Sbjct: 4 GSRIRQLRLAKNIKIAELAEAVGVDAANISRLETGKQKQFSEQTLNRLAQALSVSVPDLF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896883|gb|EFG76511.1| PbsX family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 142 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 29/55 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ A+++ +++ ++G + ++S++E G + + + +A L L Sbjct: 26 IRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSAEVLNQIAKALRVSAEVL 80 >gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] Length = 273 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N +RKE LT +++ + + IS ETGK ++ + LA+ D P Sbjct: 9 NRIAELRKEKGLTLQQVADAVSVGNNTISRYETGKREPKLETWMKLANVFDVP 61 >gi|302530263|ref|ZP_07282605.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439158|gb|EFL10974.1| transcriptional regulator [Streptomyces sp. AA4] Length = 258 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R+ R +L+Q ++ + G Q +S +E G+S ++ +A L PL + Sbjct: 5 FADALRDARSRRRLSQLDLALKAGTTQRHVSFMERGRSLPGRGMVVRVAEALGLPLRE 62 >gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 68 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + IR + TQ ++ + G +QS ++ LE + + +LA + + L Sbjct: 1 MIGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTKHPDAVTLNLLAKAMGVTVDDL 60 Query: 81 LKP 83 L+P Sbjct: 61 LEP 63 >gi|154687495|ref|YP_001422656.1| YvaN [Bacillus amyloliquefaciens FZB42] gi|126363005|emb|CAM35821.1| repressor protein RghR [Bacillus amyloliquefaciens FZB42] gi|154353346|gb|ABS75425.1| YvaN [Bacillus amyloliquefaciens FZB42] Length = 136 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 F R +R++ LT ++ +G + + IS +E GK + LA L P Sbjct: 2 ESFGKQLRTLREKRHLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLADALKIPYE 61 Query: 79 KLLK 82 +L++ Sbjct: 62 ELMQ 65 >gi|172060084|ref|YP_001807736.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992601|gb|ACB63520.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 219 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP R P + + + ER+ R++R T + R+G ++S IS +E ++ Sbjct: 1 MPEFTR--PPVDETGINERI--ARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASAS 56 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + LA L L L Sbjct: 57 PTAVVLDKLAAGLGVSLAGLF 77 >gi|110597669|ref|ZP_01385954.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] gi|110340789|gb|EAT59266.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031] Length = 109 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80 FV R+ + LTQ+ I ++ G +S IS LE+ GK +I + A L L Sbjct: 39 FVRELLLARQRSGLTQEAIASKIGTTKSAISRLESGGKHIPSITTLRKYAEALGCELEIK 98 Query: 81 LKP 83 L P Sbjct: 99 LVP 101 >gi|319935803|ref|ZP_08010232.1| hypothetical protein HMPREF9488_01063 [Coprobacillus sp. 29_1] gi|319809238|gb|EFW05687.1| hypothetical protein HMPREF9488_01063 [Coprobacillus sp. 29_1] Length = 121 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQ + + S +S +ET K+ ++ + ++ L L +L+ Sbjct: 16 GRKIQKLRNMQSLTQAYVAGLADISLSHMSNIETAKTKPSLVTLSRISRILGCTLDELV 74 >gi|309805668|ref|ZP_07699709.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308165028|gb|EFO67270.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] Length = 416 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|300781541|ref|ZP_07091395.1| XRE family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300533248|gb|EFK54309.1| XRE family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 107 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R E ++ R G + ++SE+E G + + + ++ LD Sbjct: 25 REAVGETIREARTERGDRLTDVAERAGVSTQYLSEIERGLKDPSSEVLHAVSGALDLTTR 84 Query: 79 KLLK 82 ++ + Sbjct: 85 EVTR 88 >gi|197105847|ref|YP_002131224.1| hypothetical protein PHZ_c2386 [Phenylobacterium zucineum HLK1] gi|196479267|gb|ACG78795.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 210 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ RK +Q+++ R G Q+ IS +E+G + + LA LD L Sbjct: 31 QLRDARKAKLWSQRDLSERAGIPQAHISRIESGAIDPKVSTLQDLARVLDLDLV 84 >gi|172061981|ref|YP_001809633.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994498|gb|ACB65417.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 271 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+EAK T E+ + ++S++E + I++ +++ +A L+ PL L++ Sbjct: 4 GQRIRRLRREAKKTLLEVAAEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIE 63 >gi|118443353|ref|YP_878274.1| transcriptional regulator [Clostridium novyi NT] gi|118133809|gb|ABK60853.1| putative transcriptional regulator [Clostridium novyi NT] Length = 113 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +T E+ TG QS IS++E GK I +++ LA L+ + + Sbjct: 5 EKLKQLRISRNITTYELSELTGIPQSTISKMENGKRKIEAESLQKLADALNISVNEFF 62 >gi|15679328|ref|NP_276445.1| hypothetical protein MTH1328 [Methanothermobacter thermautotrophicus str. Delta H] gi|3219928|sp|O27383|Y1328_METTH RecName: Full=Uncharacterized HTH-type transcriptional regulator MTH_1328 gi|2622434|gb|AAB85806.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RKE LTQ+E+ R G + I LE G+ + ++ +A L + Sbjct: 5 IREHRKELGLTQEELAERVGVTRQTIIALEKGRYSPSLILAHRIARALGREHIE 58 >gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071] gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071] Length = 184 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE +T + TG + S +S LE+G ++ ++ LA L +L+ Sbjct: 2 GERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 60 >gi|331699134|ref|YP_004335373.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953823|gb|AEA27520.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 175 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ + E+ +G ++ ++S+LE G + ++ ++ LA+ L+T L+ Sbjct: 2 GAAIRSRRRSIGINITELAALSGLSRPFVSQLERGLARPSMRSLTALANALNTTAHALM 60 >gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 175 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE KL+QKEI ++ +S E G+S I + LA + LL Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLL 59 >gi|284028350|ref|YP_003378281.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283807643|gb|ADB29482.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 232 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RK A T + G + +I+ LE G+ + + LA L T L Sbjct: 3 LGPEFRARRKAAGRTIASVAVDAGLSVPYIANLENGRGNPTLATLDRLATALGTHL 58 >gi|188587172|ref|YP_001918717.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351859|gb|ACB86129.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 192 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R+ L K++ TG + +S++E G+ ++ ++ ++ L+ PL Sbjct: 16 GETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPL 70 >gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521] gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521] gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 156 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R RK+A LTQ E+ + S I ET K ++++ + ++ L+ + Sbjct: 1 MTIGARIRTSRKKANLTQAELAKLIDVSPSSIRMYETNKRNVSLEILKKISTALNISISD 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|167771935|ref|ZP_02443988.1| hypothetical protein ANACOL_03308 [Anaerotruncus colihominis DSM 17241] gi|167665733|gb|EDS09863.1| hypothetical protein ANACOL_03308 [Anaerotruncus colihominis DSM 17241] Length = 70 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R + L+Q+E+ R G +E+E ++ + + L+H P+ +L Sbjct: 6 ILAWNLLRHRYDNNLSQEELAWRIGMDVKRYAEIEHAQAHTTLLTLDKLSHATGIPVPEL 65 Query: 81 LKP 83 L P Sbjct: 66 LTP 68 >gi|161508263|ref|YP_001569094.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734835|ref|ZP_04869000.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|282912706|ref|ZP_06320501.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|160369778|gb|ABX30747.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727208|gb|EES95937.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|270269068|gb|ACZ66060.1| hypothetical protein SAP035B_020 [Staphylococcus aureus] gi|270269096|gb|ACZ66088.1| hypothetical protein SAP036A_016 [Staphylococcus aureus] gi|270269128|gb|ACZ66120.1| hypothetical protein SAP042A_015 [Staphylococcus aureus] gi|270300247|gb|ACZ69053.1| hypothetical protein SAP058A_010 [Staphylococcus aureus] gi|270300466|gb|ACZ69272.1| hypothetical protein SAP071A_016 [Staphylococcus aureus] gi|282323431|gb|EFB53748.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|312439078|gb|ADQ78148.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|320143353|gb|EFW35135.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 113 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ + L+ Sbjct: 3 LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITIDHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|114800095|ref|YP_759955.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740269|gb|ABI78394.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 479 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +E+ + R +R+ +TQ ++ G + S+I+ +E + I+ + ++ LA D Sbjct: 5 KEKTLIGPRVRRLRRTLGITQAQMAEDLGVSASYINLIEANQRPISANLLLTLARVYD 62 >gi|21222694|ref|NP_628473.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|8248800|emb|CAB93061.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 279 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP P D R + R+ R+++ L+Q+E+ R + S+I +LE+G Sbjct: 1 MPG-----PKDLDPSSSPRALLGAELRHAREKSGLSQEELGARLFVSGSFIGQLESGTRR 55 Query: 61 INIDNMIILAHTLDTP 76 + + +L LDT Sbjct: 56 MQPEYARLLDDVLDTE 71 >gi|85708237|ref|ZP_01039303.1| hypothetical protein NAP1_03340 [Erythrobacter sp. NAP1] gi|85689771|gb|EAQ29774.1| hypothetical protein NAP1_03340 [Erythrobacter sp. NAP1] Length = 223 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R TQK++ R G QS IS++E G + + +++ +A L L Sbjct: 25 AASVKEARTAKGFTQKQLGGRVGLPQSHISKIENGCVDLQLSSLVEIARALGLEL 79 >gi|315300972|ref|ZP_07872315.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313630659|gb|EFR98449.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 111 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + R + IS E G N D + LA + L Sbjct: 5 KFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|303230548|ref|ZP_07317302.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] gi|302514789|gb|EFL56777.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6] Length = 149 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + LA + L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|284047052|ref|YP_003397392.1| MerR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951273|gb|ADB54017.1| transcriptional regulator, MerR family [Conexibacter woesei DSM 14684] Length = 283 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R++ LT +E R G + S++S +E G+ + + +A P+ + Sbjct: 92 GDTIRRARRDRGLTLREAAARIGVSASFLSSVERGEVGVTTQFVARVADAFLMPMSGM 149 >gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 195 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R T ++ TG + S +S LE+G+ ++ ++ LA + PL +L+ Sbjct: 14 VGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQRRPTLELLLPLARSHRVPLDELV 73 >gi|148256753|ref|YP_001241338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408926|gb|ABQ37432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 271 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ L+Q ++ + +S +ETG++ + D ++ LA LD PL + Sbjct: 17 VGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPLRE 74 >gi|22124613|ref|NP_668036.1| hypothetical protein y0699 [Yersinia pestis KIM 10] gi|45440452|ref|NP_991991.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51594841|ref|YP_069032.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108808978|ref|YP_652894.1| putative transcriptional regulator [Yersinia pestis Antiqua] gi|108810767|ref|YP_646534.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145600549|ref|YP_001164625.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|153950502|ref|YP_001402542.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|153997475|ref|ZP_02022575.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162420428|ref|YP_001608296.1| DNA-binding protein [Yersinia pestis Angola] gi|165925798|ref|ZP_02221630.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165936806|ref|ZP_02225373.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010118|ref|ZP_02231016.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214289|ref|ZP_02240324.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167399645|ref|ZP_02305169.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420662|ref|ZP_02312415.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423333|ref|ZP_02315086.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467386|ref|ZP_02332090.1| DNA-binding protein [Yersinia pestis FV-1] gi|170025937|ref|YP_001722442.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186893849|ref|YP_001870961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930499|ref|YP_002348374.1| putative transcriptional regulator [Yersinia pestis CO92] gi|229839137|ref|ZP_04459296.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896626|ref|ZP_04511793.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229899701|ref|ZP_04514842.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229900965|ref|ZP_04516089.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270489146|ref|ZP_06206220.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294505187|ref|YP_003569249.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|21957418|gb|AAM84287.1|AE013672_5 hypothetical [Yersinia pestis KIM 10] gi|45435309|gb|AAS60868.1| putative transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51588123|emb|CAH19729.1| putative transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108774415|gb|ABG16934.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108780891|gb|ABG14949.1| putative transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349110|emb|CAL22073.1| putative transcriptional regulatory protein [Yersinia pestis CO92] gi|145212245|gb|ABP41652.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289112|gb|EDM39192.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152961997|gb|ABS49458.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|162353243|gb|ABX87191.1| DNA-binding protein [Yersinia pestis Angola] gi|165915455|gb|EDR34065.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165922410|gb|EDR39587.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991025|gb|EDR43326.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204521|gb|EDR49001.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961468|gb|EDR57489.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052149|gb|EDR63557.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057503|gb|EDR67249.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752471|gb|ACA69989.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] gi|186696875|gb|ACC87504.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] gi|229682304|gb|EEO78396.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229687193|gb|EEO79268.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695503|gb|EEO85550.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700404|gb|EEO88436.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262363249|gb|ACY59970.1| putative transcriptional regulatory protein [Yersinia pestis D106004] gi|262367180|gb|ACY63737.1| putative transcriptional regulatory protein [Yersinia pestis D182038] gi|270337650|gb|EFA48427.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294355646|gb|ADE65987.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|320016691|gb|ADW00263.1| putative transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 103 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +N+ +RK +LTQ +I R G ++ IS+ E G+S +D +I +D Sbjct: 33 RKALLNSLVAVRKSKQLTQVDIAKRIGVSRQAISKFEKGESAPTLDTLIGYTAAMDI 89 >gi|332991834|gb|AEF01889.1| DNA-binding protein [Alteromonas sp. SN2] Length = 74 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E NN R +R ++TQ+E+ ++ G + I +E GK + +++ +A D P Sbjct: 3 EHYSITNNIRTLRFLVDEMTQQELASKVGVTRQTIMAIEKGKYSPSLEVAFKIALVFDKP 62 Query: 77 LWKLLK 82 ++ + Sbjct: 63 FNEVFQ 68 >gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 216 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + +RKEA LTQ E+ + G + IS E S N + + L+ + +L Sbjct: 5 GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSEPNSETLSELSKLFGVSVAQL 62 Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++ +E K+++ E R GF + G +I+++I +A L+ LL Sbjct: 86 FKMRIRDLMEEQKMSEDEFAQRVGFHKEEKDAYLYGNKMPSIEDLIKIAGALNVSTDYLL 145 >gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] Length = 113 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R E LTQ+E+ R G IS LE G +++ ++ LA D Sbjct: 6 PTQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVELSVVKLMQLADIFDCR 65 Query: 77 LWKLLK 82 + +LL Sbjct: 66 MDELLT 71 >gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 69 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RK+++L+Q+ + ++ G ++ IS ETG S I+++N +A + LL Sbjct: 7 NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLL 64 >gi|302545781|ref|ZP_07298123.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302463399|gb|EFL26492.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 469 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+E LTQ+ + R ++S +S++E G+ + + A L LL Sbjct: 81 GARIARTRRERGLTQQGLAMRANVSKSLLSKVECGQKPASPSLIAACARALSVTTSDLL 139 >gi|299535967|ref|ZP_07049286.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728572|gb|EFI69128.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 183 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 31/59 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + IR++ L+ ++ TG +++ ++++E G++ + + +A + LL+P Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRMSFSSLLQP 69 >gi|259502266|ref|ZP_05745168.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259169884|gb|EEW54379.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 204 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK+ LTQ ++ ++ + IS E GKS ++ ++ L+ L LL Sbjct: 3 FSTQIKEQRKKLGLTQADVAHQLFVTRQTISNWEQGKSYPDLAMLVKLSEVYRISLDTLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|297200612|ref|ZP_06918009.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|297147685|gb|EDY53778.2| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 195 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|224542166|ref|ZP_03682705.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] gi|224524934|gb|EEF94039.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] Length = 121 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + RK LTQ+ + + IS+ E G S + D +I LA LD + KL Sbjct: 1 MLSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILDVSVSKL 60 Query: 81 L 81 + Sbjct: 61 I 61 >gi|170752098|ref|YP_001758358.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658620|gb|ACB27675.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 239 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + R+ A+LTQ+E+ + G +Q I LE G+ + + LA L LL P Sbjct: 4 LKQFRERARLTQQELADAAGTSQPQIRRLEAGERKLTKEWAERLAPALGINAETLLFP 61 >gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] Length = 170 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + IRKE LTQKE + ++ I + E + I+ + +A LD +L+ Sbjct: 5 GDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVEPRIEVLREIATALDISFSELIN 64 Query: 83 P 83 P Sbjct: 65 P 65 >gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 205 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R + L+Q+E+ R ++ ++++E+G + + A L L LL+ Sbjct: 7 GQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRELAKFAEALGISLGTLLE 66 >gi|15963850|ref|NP_384203.1| hypothetical protein SMc02620 [Sinorhizobium meliloti 1021] gi|307309551|ref|ZP_07589206.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320383|ref|ZP_07599800.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15073025|emb|CAC41484.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306893949|gb|EFN24718.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306900011|gb|EFN30632.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 243 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R RK+ +T ++ + T + +S++E G ++ ++ + L+ L P+ + Sbjct: 57 GHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPITAFFR 116 >gi|150015531|ref|YP_001307785.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901996|gb|ABR32829.1| putative transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 436 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RK+ +T K++ + IS +E+G+S ++D + LA L+T + Sbjct: 2 EILSLGEKIKRRRKQLNMTLKDLA-KDRITPGQISLVESGRSNPSVDLLEYLADALNTNV 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|331092591|ref|ZP_08341410.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400602|gb|EGG80216.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] Length = 148 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE KL+Q+E+ + + +S E + +I + LA + + ++L Sbjct: 3 LGEKLKKYRKERKLSQREVAEKLNVTRQVVSYWECDLTIPDIQILQQLAELYEIDMEEML 62 Query: 82 K 82 + Sbjct: 63 Q 63 >gi|325848872|ref|ZP_08170382.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480516|gb|EGC83578.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 168 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R E +TQ+E+ +TG+ + IS +E G+ ++ + I A+ L T L+ Sbjct: 6 NNIKKRRNELNMTQEELAKKTGYKTKGAISRIEKGERDLSQSQIEIFANALSTTPSYLM 64 >gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 199 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 36/60 (60%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +N+RK ++Q+++ ++ G ++ +S+ E+ +S ++D +II++ D +LK Sbjct: 4 ADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVPDLDKIIIMSEYFDVTTDYILK 63 >gi|291541679|emb|CBL14789.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 64 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R++R++ + Q E+ G Q+ S E G +I ++++I LA + Sbjct: 1 MYFKRLRDLREDHDMKQSEVAEYLGIQQTVYSRYERGFQSIPVEHLIKLADLYKVSTDYI 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 188 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+E + TG +++ + ++E G+S+ + + +A ++ ++ Sbjct: 10 GNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNVAFSSFIE 69 Query: 83 P 83 P Sbjct: 70 P 70 >gi|291087267|ref|ZP_06345889.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075621|gb|EFE12985.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 159 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIIL 69 I +ER M+F + R EA LTQ E+ + G I E G + + + + Sbjct: 13 VIKKERGISMVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKI 72 Query: 70 AHTLDTPLWKLL 81 A L+T LL Sbjct: 73 ADALNTTTEYLL 84 >gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] Length = 341 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ +RK+ +Q+E+ + G ++ IS+ E ST + +++L+ Sbjct: 1 MLLSEKILTLRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|160893361|ref|ZP_02074147.1| hypothetical protein CLOL250_00911 [Clostridium sp. L2-50] gi|156864936|gb|EDO58367.1| hypothetical protein CLOL250_00911 [Clostridium sp. L2-50] Length = 109 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N RK+ LTQ E+ G + +++E G + +D ++ + L Sbjct: 7 HVIGNKLLQFRKKVHLTQIEVAELAGLSDRTYADIERGNVNMRLDTLLRICSVLHITPND 66 Query: 80 LLK 82 +L Sbjct: 67 ILT 69 >gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 ++ + RK K T ++ TGF+ IS E G T + IL L P Sbjct: 12 KLKIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGTRTPRFKDAEILGSALGVSPT 71 Query: 78 WKLL 81 W L Sbjct: 72 WLLF 75 >gi|49478848|ref|YP_039023.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140529|ref|YP_086300.1| transcriptional regulator [Bacillus cereus E33L] gi|118480088|ref|YP_897239.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196043797|ref|ZP_03111034.1| conserved domain protein [Bacillus cereus 03BB108] gi|218906200|ref|YP_002454034.1| hypothetical protein BCAH820_5112 [Bacillus cereus AH820] gi|225866980|ref|YP_002752358.1| hypothetical protein BCA_5143 [Bacillus cereus 03BB102] gi|228930031|ref|ZP_04093041.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936303|ref|ZP_04099102.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948731|ref|ZP_04111009.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124541|ref|ZP_04253726.1| Transcriptional regulator, Cro/CI [Bacillus cereus 95/8201] gi|49330404|gb|AAT61050.1| conserved hypothetical protein, possible transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973998|gb|AAU15548.1| transcriptional regulator [Bacillus cereus E33L] gi|118419313|gb|ABK87732.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196025133|gb|EDX63803.1| conserved domain protein [Bacillus cereus 03BB108] gi|218536022|gb|ACK88420.1| conserved domain protein [Bacillus cereus AH820] gi|225789784|gb|ACO30001.1| conserved domain protein [Bacillus cereus 03BB102] gi|228658881|gb|EEL14536.1| Transcriptional regulator, Cro/CI [Bacillus cereus 95/8201] gi|228811038|gb|EEM57381.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823419|gb|EEM69252.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829530|gb|EEM75157.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|324328934|gb|ADY24194.1| hypothetical protein YBT020_24835 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 75 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN +R E + +Q ++ N+ G ++ I+ +E + ++ +AH L ++ Sbjct: 6 ILQNNLVVLRAEKRWSQTDLANKAGVSRQTIASIEANRYNPSLILAFEIAHILGKEFHEV 65 Query: 81 LK 82 + Sbjct: 66 FQ 67 >gi|107027653|ref|YP_625164.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693636|ref|YP_839169.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737089|ref|YP_001778349.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105897027|gb|ABF80191.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651636|gb|ABK12276.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169819277|gb|ACA93859.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 192 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ ++ ++ +AH L Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 69 >gi|328948034|ref|YP_004365371.1| hypothetical protein Tresu_R0025 [Treponema succinifaciens DSM 2489] gi|328448358|gb|AEB14074.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 109 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 17 RERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ER I F N + R++ +Q+++ + + IS ETG+ + N+ L L Sbjct: 4 TERNIAATFARNLKFFRQKCNYSQEKLAELIDVSPATISNYETGEMWPSRQNLANLVEVL 63 Query: 74 DTPLWKLL 81 ++L Sbjct: 64 KVHPYQLF 71 >gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 143 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +R LTQKE+ ++G + I E G + + + + ++ LD + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISKALDCDISA 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|313905761|ref|ZP_07839120.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469367|gb|EFR64710.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 111 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + L+Q E N A+ ISE+E GK +I+ D + + + + +LL Sbjct: 6 GKKLKEARVKKGLSQDEAANLMNVAKRAISEMEAGKRSISADELAQFSRIYNVDVRELL 64 >gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 182 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RKE LT KEI G + + ++ E ++ +I+++I +A L L Sbjct: 1 MIGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM 5427] gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 189 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK +Q + + G ++ S E N+ + + LD + ++ Sbjct: 10 GTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNNREPNLKTIEKICEILDVTISDIV 68 >gi|258517109|ref|YP_003193331.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780814|gb|ACV64708.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 94 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K DE L+ R ++ R +TQ+E+ R G +S IS LE+G +++ Sbjct: 17 KDDEFKAEYEKLKPRYDVISQIIEARTSQNITQEELALRVGTQKSNISRLESGTYNPSLE 76 Query: 65 NMIILAHTLDTPLWKLLK 82 + +A L + LK Sbjct: 77 FLAKVARCLGKEVQVTLK 94 >gi|152967479|ref|YP_001363263.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] gi|151361996|gb|ABS04999.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] Length = 513 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R R T ++ G AQS +S++E GK + + +A L+ Sbjct: 29 DALTVGRRIRYHRGVRGWTLAQLGEAVGTAQSQLSQVENGKREPRLSLVAAVARALEVTP 88 Query: 78 WKLLKP 83 LL P Sbjct: 89 ADLLDP 94 >gi|91217959|ref|ZP_01254912.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755] gi|91183936|gb|EAS70326.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755] Length = 85 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 26/57 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + + RK ++TQ ++ + + + ++E G++ ++ + +A L Sbjct: 17 KMVGKSVKERRKTLRVTQPQVAELADISVNTLYKIERGQANPTLETLTKVADVLGME 73 >gi|332363049|gb|EGJ40836.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 108 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNESVENVFR 102 >gi|319939030|ref|ZP_08013394.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319812080|gb|EFW08346.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R+ A LTQ+E+ + + QS I+ +E G +I+ M +A L+ L Sbjct: 38 NARQNAGLTQRELADLSHVPQSTIARIERG-HNTSIETMSKIAFALNQKL 86 >gi|317506449|ref|ZP_07964251.1| hypothetical protein HMPREF9336_00621 [Segniliparus rugosus ATCC BAA-974] gi|316255259|gb|EFV14527.1| hypothetical protein HMPREF9336_00621 [Segniliparus rugosus ATCC BAA-974] Length = 112 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R + T +E+ N + ++SE+E G+ + + + + L+ P+ Sbjct: 6 REALGASLRQLRLGQRRTLREVSNAASMSLGYLSEIERGQKEASSELLAAICGALEVPIP 65 Query: 79 KLLK 82 +L+ Sbjct: 66 HVLR 69 >gi|281416439|ref|YP_003347359.1| Cro repressor protein [Enterococcus phage phiFL4A] gi|270209615|gb|ACZ64154.1| Cro repressor protein [Enterococcus phage phiFL4A] Length = 70 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + LTQK + TG ++ I +E G+S + I+LA L+ L Sbjct: 6 ESLRAARIKKSLTQKRLAELTGVTETTIRNIENGRSCPSFKLSIMLAKLLNVDFETL 62 >gi|26988905|ref|NP_744330.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983715|gb|AAN67794.1|AE016410_10 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313499699|gb|ADR61065.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 184 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK LT E+ R G + ++S++E G S + ++ ++ L +KL K Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 208 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D +R + R +R+ L+ +E+ RTG + IS+LE G +T ++ + +L+ Sbjct: 19 PDDGASDRRL-GECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSL 77 Query: 72 TLDTPL 77 L P+ Sbjct: 78 ALQVPI 83 >gi|295694790|ref|YP_003588028.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410392|gb|ADG04884.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 74 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK LTQ+E+ +R + + + +E G T + + + L +L+ Sbjct: 5 LGSRIRAFRKLKNLTQRELADRIHLSVAVLGAIERGAKTPSPHVLRAIGEALGIDEEELV 64 >gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 173 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 33/64 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + +R++ +TQ+++ ++ +S ETG + ++D +I +A + + Sbjct: 2 DQQKIGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSNMPDLDILIEIADYYEIDI 61 Query: 78 WKLL 81 +LL Sbjct: 62 RELL 65 >gi|300770302|ref|ZP_07080181.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762778|gb|EFK59595.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 220 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L+Q+ + IS E ++ ID + +A+ PL L+ Sbjct: 5 GYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63 >gi|227538776|ref|ZP_03968825.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241285|gb|EEI91300.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 220 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L+Q+ + IS E ++ ID + +A+ PL L+ Sbjct: 5 GYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63 >gi|218900380|ref|YP_002448791.1| DNA-binding protein [Bacillus cereus G9842] gi|218541269|gb|ACK93663.1| DNA-binding protein [Bacillus cereus G9842] Length = 63 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 2 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSLF 59 >gi|297618899|ref|YP_003707004.1| XRE family transcriptional regulator [Methanococcus voltae A3] gi|297377876|gb|ADI36031.1| transcriptional regulator, XRE family [Methanococcus voltae A3] Length = 64 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ E+ + G + IS +E GK ++ L+ + + ++ Sbjct: 3 NKIKVFRAMNDLTQDELAKKIGVTRQTISAIEKGKYDPSLIIAFKLSKLFNVKIEEIF 60 >gi|157372360|ref|YP_001480349.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157324124|gb|ABV43221.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 84 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 + ++ R+ A LTQ+++ G A+S IS+ E+G T M LA LD P Sbjct: 1 MVPQRLKSARQRAGLTQEKLGVLAGIDEATARSRISQYESGTYTPTFTTMCALARVLDVP 60 >gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator MJ0272 Length = 66 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+++ + G ++ I +E GK ++ +A + + Sbjct: 3 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 >gi|321157449|emb|CBW39427.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] Length = 420 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|313158570|gb|EFR57964.1| transcriptional regulator, y4mF family [Alistipes sp. HGB5] Length = 70 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + RK K+TQ+ + G + ++++E G+ I+ + + TL L Sbjct: 7 VGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGNPTIEVLEKILDTLGLEL 62 >gi|302188027|ref|ZP_07264700.1| Fis family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 155 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+ I G + ++S+LE GKS+ +D + L+ L+ Sbjct: 9 LRALRAHKGLTQESIPE--GSNRQYLSQLEHGKSSPTLDKLQDLSKAYGASPLLLV 62 >gi|302344010|ref|YP_003808539.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301640623|gb|ADK85945.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 123 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ + R +R +T +++ + G S IS++E GK +++ + + +A L Sbjct: 58 VDRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGKRSMSTELLKKMAEALRV 117 Query: 76 PLWKLL 81 LL Sbjct: 118 DAEMLL 123 >gi|326204530|ref|ZP_08194387.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985323|gb|EGD46162.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 111 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ R++ LT+++ + G + ++ ++E G+ +++ + +A +L Sbjct: 11 GLRIRSEREKIGLTREQFAEQVGISPLYVGQIERGQRAMSLKTFVKIADSLH 62 >gi|228960181|ref|ZP_04121838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799449|gb|EEM46409.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 114 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E + ++S + LE + ++D + +A L + L+ Sbjct: 4 FGENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63 >gi|148379638|ref|YP_001254179.1| phage transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|237795101|ref|YP_002862653.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148289122|emb|CAL83216.1| phage transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|229261266|gb|ACQ52299.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 119 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RK+ ++TQ+E G + +S LE G +ID L+ P+ +L+ Sbjct: 7 LKNDRKQKEMTQEEYAKLIGITRGTLSHLERG-REPSIDTSKKLSQYFGKPITELI 61 >gi|118618704|ref|YP_907036.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570814|gb|ABL05565.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 108 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + L PL Sbjct: 6 REVIGDVLRGERTSQGRTLREVFDTARVSLGYLSEIERGRKEPSSELLNAICDALQVPLS 65 Query: 79 KLL 81 ++L Sbjct: 66 EVL 68 >gi|84385211|ref|ZP_00988243.1| DNA-binding protein [Vibrio splendidus 12B01] gi|84379808|gb|EAP96659.1| DNA-binding protein [Vibrio splendidus 12B01] Length = 188 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + +R+E + + TG +++ + ++E G+S+ + + +A + L Sbjct: 7 VGVNLKRLRQEKGWSLDKTAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSL 62 >gi|331702631|ref|YP_004399590.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129974|gb|AEB74527.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 64 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R+ +L+Q+ I R G ++ IS+ E + +I+N++ L D + +LL Sbjct: 4 LGNNLKEFRQYNELSQEIIACRLGVSRQAISQWEHNLTYPDIENLVRLTQIFDCDINELL 63 >gi|332716375|ref|YP_004443841.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063060|gb|ADY66750.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 472 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E++ R +R+ A+ TQ + R G + S+++++E + ++ ++ L + Sbjct: 4 EKLFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLDV 63 Query: 78 WKL 80 +L Sbjct: 64 TEL 66 >gi|302555762|ref|ZP_07308104.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473380|gb|EFL36473.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 196 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R R A L+ E+ R ++ + LE + N ++ LA TL + LL Sbjct: 16 LAHNVRAARTRAGLSLDELGRRAKVSKGALVGLEKAQGNPNFATLVRLADTLGVSVSALL 75 Query: 82 K 82 + Sbjct: 76 E 76 >gi|298376898|ref|ZP_06986852.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] gi|298265882|gb|EFI07541.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] Length = 101 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK A+LTQ E+ R G + +IS +E G + + + +A + Sbjct: 42 AQILLDARKNARLTQAELAKRIGADKGYISRIERGLTVPTVSTLYRIAAAMG 93 >gi|239637715|ref|ZP_04678683.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596674|gb|EEQ79203.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 66 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI +N + R K++Q+E+ R G ++ I+ +E K ++ I +A L L Sbjct: 1 MIALNRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLND 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|149927186|ref|ZP_01915443.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp. MED105] gi|149824125|gb|EDM83346.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp. MED105] Length = 257 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 33/57 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R++R K++Q ++ R G +Q +S +ETGK++ + + ++ L LD PL + Sbjct: 11 GIRLRDLRARQKISQLDLALRVGVSQRHLSCIETGKASASKEMLLALLEGLDAPLNE 67 >gi|148548763|ref|YP_001268865.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512821|gb|ABQ79681.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 184 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK LT E+ R G + ++S++E G S + ++ ++ L +KL K Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|329891038|ref|ZP_08269381.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846339|gb|EGF95903.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 72 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R A +TQ ++ R G + I +E GK + +++ +A + ++ + Sbjct: 10 NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAQVFGVEIGEVFQ 69 >gi|292490738|ref|YP_003526177.1| hypothetical protein Nhal_0606 [Nitrosococcus halophilus Nc4] gi|291579333|gb|ADE13790.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 127 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 7 DEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 DE ++ + E ++ N + R LTQ ++ + G +QS + +E G+ I Sbjct: 45 DEENIPQEV-VESLVAGENPLKVWRTYRGLTQAQLAEQVGLSQSHLVTMEKGERKGTIKV 103 Query: 66 MIILAHTLDTPLWKL 80 + +A TL + L Sbjct: 104 LKRIAQTLRVDIDDL 118 >gi|291514552|emb|CBK63762.1| Helix-turn-helix [Alistipes shahii WAL 8301] Length = 76 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 V+ + +R+E LTQ+ +R T I +E+G+ +I++ + L + PL Sbjct: 12 KQVVDRLKTVRRERGLTQENVRFDTDLN---IGRIESGRHSISLTTLADLCDYYNVPLED 68 Query: 80 LLK 82 K Sbjct: 69 FFK 71 >gi|226951015|ref|YP_002806106.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841154|gb|ACO83820.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 220 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + R + LTQK++ + G A+++I+E+E+G+ IN M ++ L Sbjct: 4 VSNKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57 >gi|224540522|ref|ZP_03681061.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus DSM 14838] gi|224517863|gb|EEF86968.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus DSM 14838] Length = 105 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+R + E L+ + + R+ LTQ+++ G ++ IS++E+GKS I Sbjct: 23 PKRDKYEADLNA------FLIGEAIKQAREARNLTQEQLGELMGVKRAQISKIESGKS-I 75 Query: 62 NIDNMIILAHTLDTPLWKL 80 + ++ + L Sbjct: 76 SFSTIVRAFKAMGVNTASL 94 >gi|56424516|gb|AAV91189.1| repressor [Vibrio cholerae] gi|56424526|gb|AAV91194.1| repressor [Vibrio cholerae] Length = 85 Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R++R E L Q+E+ N G ++ E G + ++ + LA P+ +L Sbjct: 1 MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|331702111|ref|YP_004399070.1| XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129454|gb|AEB74007.1| transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 66 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK+ ++Q + + G A+ I+ +E K ++ I LA L T L L Sbjct: 2 NRVREYRKQVGISQFALAEKVGVARQTINLIENDKYNPSLKLCISLAEELGTDLNTLF 59 >gi|301799274|emb|CBW31797.1| unnamed protein product [Streptococcus pneumoniae OXC141] Length = 287 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGNV-ISRTSLSKIESGKATPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|302343044|ref|YP_003807573.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301639657|gb|ADK84979.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 249 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H+ +L + + R+ QK+ QS +S +E G+ + + + L Sbjct: 9 HMPSKMLPLPPEIGDRVKAARESFGYNQKDFAELLAIGQSTLSRIENGERPPSPELLYRL 68 Query: 70 AHTL-DTPLWKLL 81 A L +LL Sbjct: 69 ALKFPSVDLRELL 81 >gi|269838403|ref|YP_003320631.1| hypothetical protein Sthe_2392 [Sphaerobacter thermophilus DSM 20745] gi|269787666|gb|ACZ39809.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 406 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ A LTQ+E + G + IS E + T + ++ LA T + LL Sbjct: 7 LGARLRAAREWAGLTQEEAASALGVTHALISYWENDRRTPGLGHLTRLAEIYGTTVTNLL 66 Query: 82 KP 83 P Sbjct: 67 DP 68 >gi|260911954|ref|ZP_05918518.1| hypothetical protein HMPREF6745_2473 [Prevotella sp. oral taxon 472 str. F0295] gi|260633901|gb|EEX52027.1| hypothetical protein HMPREF6745_2473 [Prevotella sp. oral taxon 472 str. F0295] Length = 78 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D I ER ++R+E T +++ + + + LE G++ I + ++I +A+ Sbjct: 8 DMIKSERKRIGVRIASLREEKGYTHEQLAKQADMSIGELIRLEKGRNNIKLVDLIAVANA 67 Query: 73 LDTPLWKL 80 L + L Sbjct: 68 LGVSIELL 75 >gi|256786232|ref|ZP_05524663.1| DNA-binding protein [Streptomyces lividans TK24] gi|289770123|ref|ZP_06529501.1| DNA-binding protein [Streptomyces lividans TK24] gi|289700322|gb|EFD67751.1| DNA-binding protein [Streptomyces lividans TK24] Length = 279 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP P D R + R+ R+++ L+Q+E+ R + S+I +LE+G Sbjct: 1 MPG-----PKDLDPSSSPRALLGAELRHAREKSGLSQEELGARLFVSGSFIGQLESGTRR 55 Query: 61 INIDNMIILAHTLDTP 76 + + +L LDT Sbjct: 56 MQPEYARLLDDVLDTE 71 >gi|228999777|ref|ZP_04159351.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock3-17] gi|229007332|ref|ZP_04164931.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock1-4] gi|228753937|gb|EEM03376.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock1-4] gi|228759984|gb|EEM08956.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock3-17] Length = 70 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + NN +R E + +Q E+ NR G ++ I+ +E + ++ +AH L ++ Sbjct: 1 MLQNNLIALRAEKRWSQTELANRVGVSRQTIASIEANRYNPSLILAFEIAHVLGKEFHEV 60 Query: 81 LK 82 + Sbjct: 61 FQ 62 >gi|229027735|ref|ZP_04183918.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228733571|gb|EEL84372.1| transcriptional regulator, XRE [Bacillus cereus AH1272] Length = 102 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ ++S I E + + + +I +A + Sbjct: 2 KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|229099941|ref|ZP_04230863.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29] gi|228683486|gb|EEL37442.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29] Length = 60 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q+++ N+ G + I LE GK + +A L+ P+ L Sbjct: 1 MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLF 56 >gi|255656468|ref|ZP_05401877.1| transcriptional regulator, XRE family protein [Clostridium difficile QCD-23m63] Length = 65 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 25/56 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ L Q++ ++ IS +E GK +++ ++ + + ++ Sbjct: 5 VEALRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIEEIF 60 >gi|224541678|ref|ZP_03682217.1| hypothetical protein CATMIT_00850 [Catenibacterium mitsuokai DSM 15897] gi|224525395|gb|EEF94500.1| hypothetical protein CATMIT_00850 [Catenibacterium mitsuokai DSM 15897] Length = 140 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 KE KLTQ ++ + TG ++ +S LE +ID + LA LD + L + Sbjct: 5 KEKKLTQAQLADMTGIHRAMLSRLEGQDYIPSIDQLQALAEVLDFEVTDLFE 56 >gi|182684292|ref|YP_001836039.1| hypothetical protein SPCG_1322 [Streptococcus pneumoniae CGSP14] gi|194397840|ref|YP_002037950.1| Tn5251 transcriptional regulator Cro/CI family [Streptococcus pneumoniae G54] gi|307127299|ref|YP_003879330.1| Cro/CI family transcriptional regulator [Streptococcus pneumoniae 670-6B] gi|322388220|ref|ZP_08061824.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|182629626|gb|ACB90574.1| hypothetical protein SPCG_1322 [Streptococcus pneumoniae CGSP14] gi|194357507|gb|ACF55955.1| Tn5251 transcriptional regulator Cro/CI family [Streptococcus pneumoniae G54] gi|218473459|emb|CAV31169.1| hypothetical protein [Streptococcus pneumoniae] gi|306484361|gb|ADM91230.1| transcriptional regulator, Cro/CI family [Streptococcus pneumoniae 670-6B] gi|321140892|gb|EFX36393.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321156830|emb|CBW38817.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] gi|321157363|emb|CBW39343.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] gi|321157383|emb|CBW39362.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] gi|321157408|emb|CBW39386.1| putative conjugative transposon replication initiation factor [Streptococcus pneumoniae] Length = 472 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78 + + R L+Q + TG + ++S++ETGK + D L L D PL Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72 Query: 79 KLL 81 L Sbjct: 73 MLF 75 >gi|169833481|ref|YP_001693628.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae Hungary19A-6] gi|168995983|gb|ACA36595.1| helix-turn-helix domain protein [Streptococcus pneumoniae Hungary19A-6] Length = 287 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGNV-ISRTSLSKIESGKATPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|153009334|ref|YP_001370549.1| hypothetical protein Oant_2004 [Ochrobactrum anthropi ATCC 49188] gi|151561222|gb|ABS14720.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 470 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ K TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHKATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|148985454|ref|ZP_01818659.1| hypothetical protein CGSSp3BS71_08406 [Streptococcus pneumoniae SP3-BS71] gi|147922412|gb|EDK73532.1| hypothetical protein CGSSp3BS71_08406 [Streptococcus pneumoniae SP3-BS71] Length = 97 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGNV-ISRTSLSKIESGKATPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|22536402|ref|NP_687253.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22533229|gb|AAM99125.1|AE014201_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 158 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK+ LTQ ++ QS + E GK++++I+N ILA + LL Sbjct: 3 NRLKELRKDKGLTQADLAKVINTNQSQYGKYENGKTSLSIENSKILADFFGVSIPYLL 60 >gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 234 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N +RKE LT +++ + G + IS ETGK ++ L++ D ++ L Sbjct: 9 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLSNYFDVTVYYL 65 >gi|54301972|ref|YP_131965.1| hypothetical protein PBPRB0292 [Photobacterium profundum SS9] gi|46915392|emb|CAG22165.1| hypothetical protein PBPRB0292 [Photobacterium profundum SS9] Length = 91 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R+E+ LTQ E+ R G IS LE+G+S ++ ++ A L Sbjct: 36 MREESGLTQDEVAERMGTKAPNISRLESGRSNPSLKTLVSYAQACGFKL 84 >gi|332967946|gb|EGK07034.1| transcriptional regulator [Kingella kingae ATCC 23330] Length = 68 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ +Q+E+ R A+ I+ +E + + I LAH LDT L L Sbjct: 3 ANQVRQYRQIKGWSQQELAQRVEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61 >gi|315920969|ref|ZP_07917209.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694844|gb|EFS31679.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 105 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R+ LTQ+++ G ++ IS++E+GKS I+ ++ + Sbjct: 35 FLIGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGVKTAS 93 Query: 80 L 80 L Sbjct: 94 L 94 >gi|303327169|ref|ZP_07357611.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302863157|gb|EFL86089.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 95 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++IR+ TQ ++ G + +I++LE G +I+ ++ +A L + Sbjct: 12 AKTIKDIRESKGWTQAQLAGFAGLSDVYIAKLEQGVRGDSINALVQIAAATGITFADLAR 71 >gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R RK +TQ ++ G + + E+G T+ + + +A TL + Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNA 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 239 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R + LTQ ++ + ++ IS ETG T D++ +AH L+ + Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|271962430|ref|YP_003336626.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505605|gb|ACZ83883.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 117 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 +PH + + R IRK L+QK + R+G +Q +S +E G +I + Sbjct: 21 AQPHSEYEQAGRDLELGDQLREIRKRRGLSQKVVAERSGMSQPALSRIEGGGGIPDIATL 80 Query: 67 IILAHTLDT 75 + L + Sbjct: 81 LRLGAAMGV 89 >gi|256827327|ref|YP_003151286.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583470|gb|ACU94604.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 192 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ L+Q+++ +R G S I+ELE G+ ++ +I + L L L+ Sbjct: 7 LGHKIVTLREAHHLSQQDLADRCGCDVSAIAELEAGEVPPSLAPLIKITRALGVRLGTLM 66 >gi|170016383|ref|YP_001727302.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803240|gb|ACA81858.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 258 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +NIR + LTQ + + ++ +S E G S + + I+A+T D PL +LL Sbjct: 10 LQNIRTKQNLTQVDFAEKIFVSRQTVSNWERGISIPPVTALSIIANTFDVPLTQLL 65 >gi|169333644|ref|ZP_02860837.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] gi|169259638|gb|EDS73604.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R + +++Q+ + ++S I++ E+ K +++N+ ++A D + L+ Sbjct: 3 FSEKLKKLRIDNEMSQENLAELLNVSRSAIAKWESSKGMPDLENIKMIAPIFDVTIDSLI 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] Length = 222 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LTQK + + +S+ ETG+S ++ + L L + +LL Sbjct: 11 IAECRKEKGLTQKALGEKLNVTDRAVSKWETGRSFPDVAILEDLCQELGISVSELL 66 >gi|160934569|ref|ZP_02081955.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] gi|156866022|gb|EDO59394.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] Length = 121 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 25/64 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + RK +++ ++ + A +I+ +E ++ + L LD + + Sbjct: 13 KAFGQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQ 72 Query: 80 LLKP 83 P Sbjct: 73 FFFP 76 >gi|149187671|ref|ZP_01865968.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] gi|148838551|gb|EDL55491.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] Length = 182 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ +R+ A L+Q+E+ R G +IS++E+ + ++ ++ L + + + + Sbjct: 6 GPRFKALRERAGLSQRELAKRAGVTNGFISQIESNAVSPSVASLSKLLSKIPSSMAEFF 64 >gi|146307658|ref|YP_001188123.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575859|gb|ABP85391.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 185 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +RK K+T E+ R G + ++S++E G S + ++ ++ LD P Sbjct: 17 LRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAISEALDVP 64 >gi|134297206|ref|YP_001120941.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140363|gb|ABO56106.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 266 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EAK T E+ + ++S++E + I++ +++ +A+ L PL L+ Sbjct: 9 GQRIRRLRREAKKTLLEVATEAHLSVGFLSQVERNLTGISLSSLVNVANALKVPLGTLI 67 >gi|152986025|ref|YP_001346033.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961183|gb|ABR83208.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 184 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +RK +T + + + + ++S++E G S +D+++ ++ L P Sbjct: 15 VRELRKRKGMTLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVP 65 >gi|92114029|ref|YP_573957.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797119|gb|ABE59258.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 210 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 E + + IR + T +++ RTG A+S +S++E + + + L Sbjct: 15 SGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIENDQISPTFSAVQKLI 74 Query: 71 HTLDTPLWKLLKP 83 L L +LL P Sbjct: 75 GGLGIDLPQLLTP 87 >gi|77919058|ref|YP_356873.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545141|gb|ABA88703.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + + R LT + + N +G + + IS +E G + ++ ++ LA L + Sbjct: 3 KTLIGKKLKTTRLGKGLTIQGLTNLSGVSANMISRIERGLTVPSVKILMKLASALGMSI 61 >gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53] gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53] Length = 239 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R + LTQ ++ + ++ IS ETG T D++ +AH L+ + Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69] gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92] gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1] gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69] gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92] gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2] gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] Length = 239 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R + LTQ ++ + ++ IS ETG T D++ +AH L+ + Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11] gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E] gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11] gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E] gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 239 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R + LTQ ++ + ++ IS ETG T D++ +AH L+ + Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 191 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ I ++E G+S+ I + +A + L L Sbjct: 8 LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNFSLSTFL 67 Query: 82 KP 83 +P Sbjct: 68 EP 69 >gi|306824518|ref|ZP_07457864.1| probable transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433305|gb|EFM36275.1| probable transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 116 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L + Sbjct: 13 QKVKYFRTQKKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALQMTPEEFF 70 >gi|302521750|ref|ZP_07274092.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302430645|gb|EFL02461.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 276 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 D F + R +R TQ+E+ R G + S +S +ETG+ Sbjct: 8 DPARSPGEAFGEHLRRLRDGRGWTQEELAARMGISASHVSAVETGRRPPT 57 >gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 151 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R + +LRE N R IR E TQ ++ G +++ ++E G+S+I Sbjct: 36 PGRAAKGGRNKEELLRE---MGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSI 92 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ + +L T+D L L+ Sbjct: 93 ALEKLALLNETMDIDLNYLIT 113 >gi|260910939|ref|ZP_05917580.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634930|gb|EEX52979.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 110 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 27/76 (35%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 KRD R R LTQ E+ G +S I +LE+GKS I + Sbjct: 24 KRDTMEKRLKEEINAYYVGEAIRKARTAQHLTQDELGKLIGVQRSQICKLESGKSVITLP 83 Query: 65 NMIILAHTLDTPLWKL 80 M + L L Sbjct: 84 TMSRVFQALGISTATL 99 >gi|271966178|ref|YP_003340374.1| hypothetical protein Sros_4808 [Streptosporangium roseum DSM 43021] gi|270509353|gb|ACZ87631.1| hypothetical protein Sros_4808 [Streptosporangium roseum DSM 43021] Length = 223 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +L+++++ R G ++S LE + +D + LA L+T + +LL Sbjct: 11 LGRRVAWRRKELRLSREQLAGRAGIDPGYLSYLEETAAAPTLDTVRKLATALNTNVEELL 70 >gi|239627732|ref|ZP_04670763.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239517878|gb|EEQ57744.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 94 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 LR R + RK+ +TQ E+ R G +S IS LE+G ++D + +A +L Sbjct: 28 LRPRYEAIAQIIAARKQQNMTQAELARRVGTQKSNISRLESGNYNPSLDFLSKVAESLGK 87 Query: 76 PL 77 L Sbjct: 88 SL 89 >gi|167621125|ref|ZP_02389756.1| hypotethical transcriptional regulator [Burkholderia thailandensis Bt4] Length = 102 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R +LTQ E+ R G + S++SE+E G +D + + P + Sbjct: 1 MLYRALKLLRTYHQLTQVELAKRLGISNSYLSEIEKGDKAPGLDLLGKYSEVFKMPTSSI 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|81427908|ref|YP_394907.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609549|emb|CAI54595.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 103 Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 R RK+ LT +E+ ++G + S+IS +E G+ + I + +A L L Sbjct: 7 QMIREHRKQLGLTIEELAEKSGSSYSFISRIERGEVDNLKIKKLNDIAEALGIELIDFF 65 >gi|319937843|ref|ZP_08012245.1| DNA-binding protein [Coprobacillus sp. 29_1] gi|319807073|gb|EFW03689.1| DNA-binding protein [Coprobacillus sp. 29_1] Length = 194 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R E+ L+Q+E+ ++ + IS E GK+ +I+++++L+ L L+K Sbjct: 5 SQIKKYRLESSLSQEELADKIFVTRQTISNWENGKNYPDINSIVLLSTLFGISLDILVK 63 >gi|294794332|ref|ZP_06759468.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454662|gb|EFG23035.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 91 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 27/45 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R++ +TQ ++ +++G AQS+IS+LE+G + + + L Sbjct: 27 RRQLGMTQYQLADKSGLAQSYISDLESGSIDPRWSTIYRVVYGLG 71 >gi|226325033|ref|ZP_03800551.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] gi|225206381|gb|EEG88735.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] Length = 112 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RKE ++TQK++ ++ + +S+ E G S N+ +I +A L + +LL+ Sbjct: 8 LAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADILGITVTELLQ 64 >gi|167737064|ref|ZP_02409838.1| putative DNA-binding protein [Burkholderia pseudomallei 14] Length = 158 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 R IRK A L+Q E+ R A+ ++ +E G+ + + + LA L + Sbjct: 14 ERLRTIRKRAGLSQDELAARASLARPNLASVEQGRRANLRLSTLSRLADVLGVDVVDFF 72 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R DE R+I N + +R EA L+Q+ + + ++++ LE ++ + Sbjct: 75 RSVDEQQPVGEDATARVI--ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMV 132 Query: 64 DNMIILAHTLDTPLWKLLKP 83 ++ LA L + + LL+P Sbjct: 133 VDLQDLADALGSQIPILLEP 152 >gi|139439104|ref|ZP_01772556.1| Hypothetical protein COLAER_01566 [Collinsella aerofaciens ATCC 25986] gi|133775451|gb|EBA39271.1| Hypothetical protein COLAER_01566 [Collinsella aerofaciens ATCC 25986] Length = 75 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R R A ++Q+++ N+ G + S I E G +D +A L L+ Sbjct: 8 FGANLRAARARADMSQEQLANKAGLSASSIIGYENGSMVPGVDKAYAIAQALGCTPNDLM 67 >gi|28870261|ref|NP_792880.1| transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853508|gb|AAO56575.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|331016477|gb|EGH96533.1| transcriptional regulator, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 212 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + L+ + TG +++ ++++E+G+S +I + +A L + L Sbjct: 32 VARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSIAAFL 91 Query: 82 K 82 + Sbjct: 92 E 92 >gi|119387592|ref|YP_918626.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378167|gb|ABL72930.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 211 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +LT +E+ TG + S +S++E + + + +A L L LL Sbjct: 28 LGPRLKALRKGQQLTLQEVARLTGVSTSALSKIERNDLSPTLTTLQRIASGLQVELSALL 87 >gi|26989603|ref|NP_745028.1| XRE family transcriptional regulator [Pseudomonas putida KT2440] gi|148548020|ref|YP_001268122.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|167033897|ref|YP_001669128.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|325276264|ref|ZP_08142055.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|24984484|gb|AAN68492.1|AE016481_8 transcriptional regulator, putative [Pseudomonas putida KT2440] gi|148512078|gb|ABQ78938.1| transcriptional regulator, XRE family [Pseudomonas putida F1] gi|166860385|gb|ABY98792.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] gi|298682210|gb|ADI95276.1| XRE family transcriptional regulator [Pseudomonas putida] gi|313499097|gb|ADR60463.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] gi|324098604|gb|EGB96659.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 181 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ L+Q+E+ R+G S IS++E + + ++ ++ L + L + Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEFF 62 >gi|330821963|ref|YP_004350825.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327373958|gb|AEA65313.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 193 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R+ K T E G ++ ++S++E G ++ +I ++ +AH L Sbjct: 17 LGGKIRALRQRLKRTLDETAGAAGISKPFLSQVERGLASPSITSLAGIAHALGV 70 >gi|311071093|ref|YP_003976016.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942] gi|310871610|gb|ADP35085.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942] Length = 67 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E TQ + + I +E GK + I +A L+ L +L Sbjct: 3 NRVKMARIEKGWTQSQHAAHVSVTRQTIGLIEKGKYNPTLQLCIAIAKALNQTLDQLF 60 >gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R +RK LT + + TG + W+S +E G++ +I ++ +A Sbjct: 5 VGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRDLEKIAALFG 57 >gi|256396383|ref|YP_003117947.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362609|gb|ACU76106.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 189 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 R +R E ++ + ++ +S LE G I+ + +A L P+ LL Sbjct: 14 GARIRRLRLERGVSLSALARDAAVGKATLSGLEDGSRGNPTIETLYAIAGRLGVPIGALL 73 >gi|229069332|ref|ZP_04202622.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229078964|ref|ZP_04211516.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228704378|gb|EEL56812.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228713819|gb|EEL65704.1| Transcriptional regulator, Xre [Bacillus cereus F65185] Length = 404 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ + LL Sbjct: 4 LGEKIKTLRKEKKLTQTELVG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|225573251|ref|ZP_03782006.1| hypothetical protein RUMHYD_01442 [Blautia hydrogenotrophica DSM 10507] gi|225039383|gb|EEG49629.1| hypothetical protein RUMHYD_01442 [Blautia hydrogenotrophica DSM 10507] Length = 114 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N R + KLTQ E+ + ++ +LE ++ + D + + ++ Sbjct: 8 FGIVLKNARMDKKLTQAELAEILDISLPYLKDLERFRNNPSYDVFEKVIRYFNLSADTVI 67 Query: 82 KP 83 P Sbjct: 68 YP 69 >gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] Length = 217 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ ++Q+++ ++ IS ETGK+ +I +M LA + L+ Sbjct: 7 GTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKTLPDIQSMAYLAEVFGVTVDDLV 65 >gi|206970675|ref|ZP_03231627.1| DNA-binding protein [Bacillus cereus AH1134] gi|229178189|ref|ZP_04305560.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|206734311|gb|EDZ51481.1| DNA-binding protein [Bacillus cereus AH1134] gi|228605319|gb|EEK62769.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] Length = 404 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + +S +S++E GK+T ++ + +A L+ + LL Sbjct: 4 LGEKIKTLRKEKKLTQTELVG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7] gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7] Length = 206 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 + + +RKE LTQ+++ N G +S I++ E + + D + L+ D P Sbjct: 1 MTGERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVP 57 >gi|167749383|ref|ZP_02421510.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|167657664|gb|EDS01794.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|291556256|emb|CBL33373.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 108 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE L Q E+ ++S +ETG+S +++ ++ L L+T L Sbjct: 8 LGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNTTPDYFL 67 >gi|160945036|ref|ZP_02092262.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|158442767|gb|EDP19772.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|295104555|emb|CBL02099.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 231 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE +TQK+ G +Q+ +S E G +D ++ +A + LL Sbjct: 3 FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 >gi|91779177|ref|YP_554385.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691837|gb|ABE35035.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 302 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P R DE + + R N+ R+ R ++Q ++ R G +Q IS +E+G Sbjct: 8 PSRLADERAM-NPENPARNTTSNDLGVLLRHWRDLRAVSQLDLSFRAGVSQRHISFIESG 66 Query: 58 KSTINIDNMIILAHTLDTPLWK 79 +S + ++ +A TLD PL + Sbjct: 67 RSVPSRQMLLDIAQTLDIPLRE 88 >gi|73663641|ref|YP_302422.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496156|dbj|BAE19477.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 117 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R++ +Q E+ ++ IS+ E K +ID +I ++ D L +L+K Sbjct: 4 GSKTKEKREQKHWSQDELAEILNISRQSISKWELNKVYPSIDMLIKMSDLFDISLDELIK 63 >gi|42523926|ref|NP_969306.1| hypothetical protein Bd2497 [Bdellovibrio bacteriovorus HD100] gi|39576133|emb|CAE80299.1| conserved hypothetical protein with HTH domain [Bdellovibrio bacteriovorus HD100] Length = 92 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLD 74 +R++ + + + R A L+Q+++ ++ G++ +IS E G S I+ + L Sbjct: 1 MRQKNMLADFLKQKRVSAGLSQRDVADKLGYSTPQFISNWERGVSHPPINALKRLGELYK 60 Query: 75 TPLWKLLK 82 L + Sbjct: 61 VSADDLFE 68 >gi|16804446|ref|NP_465931.1| hypothetical protein lmo2408 [Listeria monocytogenes EGD-e] gi|224503444|ref|ZP_03671751.1| hypothetical protein LmonFR_13202 [Listeria monocytogenes FSL R2-561] gi|254831169|ref|ZP_05235824.1| hypothetical protein Lmon1_07403 [Listeria monocytogenes 10403S] gi|255018503|ref|ZP_05290629.1| hypothetical protein LmonF_13781 [Listeria monocytogenes FSL F2-515] gi|16411896|emb|CAD00486.1| lmo2408 [Listeria monocytogenes EGD-e] Length = 67 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N + IR++ +TQ E+ + ++ I +E GK +++ + +A D P+ + Sbjct: 1 MVVTNIVKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEE 60 Query: 80 LL 81 + Sbjct: 61 IF 62 >gi|119387639|ref|YP_918673.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378214|gb|ABL72977.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 184 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++RK +T E+ G + W+S++E G++T ++ ++ ++ L + Sbjct: 5 VGEDIRSLRKSRGMTLLELAGDVGRSVGWLSQVERGQTTPSVHDLGQISDRLGVNISFFF 64 Query: 82 K 82 + Sbjct: 65 R 65 >gi|326384503|ref|ZP_08206183.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326196848|gb|EGD54042.1| helix-turn-helix domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 106 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R +R T +E+ + ++SE+E G+ + + + + LD P+ Sbjct: 6 REAIGDELRRVRNGQGRTLREVSTDARVSLGYLSEVERGQKEASSELLASICEALDVPIG 65 Query: 79 KLL 81 +L Sbjct: 66 DVL 68 >gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 113 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ KLTQ +I + +Q + E G +N+I +A L+ + L+ Sbjct: 3 FGERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKKPTQENLIKIAQILNVTVDYLV 62 >gi|317497673|ref|ZP_07955988.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895007|gb|EFV17174.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 105 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + ++IR++ LTQ ++ G +IS +E ++ +++ + A L L+ Sbjct: 6 YGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDSLV 65 >gi|258406621|ref|YP_003199362.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798848|gb|ACV69784.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + LTQ E+ +TG AQS +S +E GK I D LA L+ Sbjct: 62 LRAARNRSGLTQVELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLN 110 >gi|219855694|ref|YP_002472816.1| hypothetical protein CKR_2351 [Clostridium kluyveri NBRC 12016] gi|219569418|dbj|BAH07402.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 66 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IR + +TQ+++ + G + I+ +E K ++ L+ TL + +L Sbjct: 3 LLKNKIKTIRNKLGITQEQLAKKCGVVRQTINCIENDKYDPTLELAFKLSKTLKVKVDEL 62 Query: 81 L 81 Sbjct: 63 F 63 >gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718161|gb|EDY62069.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 151 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 15 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73 >gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] Length = 187 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE +T + TG + S +S LE+G ++ ++ LA L +L+ Sbjct: 4 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 63 >gi|167768389|ref|ZP_02440442.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1] gi|167709913|gb|EDS20492.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1] gi|291560359|emb|CBL39159.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 105 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + ++IR++ LTQ ++ G +IS +E ++ +++ + A L L+ Sbjct: 6 YGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDSLV 65 >gi|196033092|ref|ZP_03100505.1| conserved domain protein [Bacillus cereus W] gi|217962470|ref|YP_002341042.1| hypothetical protein BCAH187_A5148 [Bacillus cereus AH187] gi|222098451|ref|YP_002532509.1| transcriptional regulator [Bacillus cereus Q1] gi|229141721|ref|ZP_04270251.1| Transcriptional regulator, Cro/CI [Bacillus cereus BDRD-ST26] gi|229199148|ref|ZP_04325831.1| Transcriptional regulator, Cro/CI [Bacillus cereus m1293] gi|195994521|gb|EDX58476.1| conserved domain protein [Bacillus cereus W] gi|217067696|gb|ACJ81946.1| conserved domain protein [Bacillus cereus AH187] gi|221242510|gb|ACM15220.1| transcriptional regulator [Bacillus cereus Q1] gi|228584419|gb|EEK42554.1| Transcriptional regulator, Cro/CI [Bacillus cereus m1293] gi|228641789|gb|EEK98090.1| Transcriptional regulator, Cro/CI [Bacillus cereus BDRD-ST26] Length = 75 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I NN +R E + +Q ++ N+ G ++ I+ +E + ++ +AH L ++ Sbjct: 6 ILQNNLVVLRAEKRWSQTDLANKAGVSRQTIASIEANRYNPSLILAFEIAHILGKEFHEV 65 Query: 81 LK 82 + Sbjct: 66 FQ 67 >gi|27497171|gb|AAN64201.1| Orf9 [Photorhabdus luminescens] Length = 130 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +IRK +LTQ ++ + + E GK+ D +I LA L+ + LL Sbjct: 16 FGKNLSSIRKSRQLTQLKLADLLDIQPRMVGRWEQGKAKPQFDYIIKLAQILEVSIDHLL 75 >gi|315147042|gb|EFT91058.1| helix-turn-helix protein [Enterococcus faecalis TX4244] Length = 257 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQ++I + IS+ ETG+S +IDN+++L+ + + +L++ Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63 >gi|299132768|ref|ZP_07025963.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298592905|gb|EFI53105.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 117 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F RK LTQ + R G +++ I+ +E+G+ + + ++ LA L+ Sbjct: 8 KAFGQAVATRRKGLNLTQATLAARVGISRASIANIESGRQNVLLHHVYRLASALEFSKVS 67 Query: 80 LLKP 83 L P Sbjct: 68 DLLP 71 >gi|296386710|ref|ZP_06876209.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 179 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + ++TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLETLADKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60 >gi|294786274|ref|ZP_06751528.1| DNA-binding protein [Parascardovia denticolens F0305] gi|315225808|ref|ZP_07867596.1| transcriptional regulator [Parascardovia denticolens DSM 10105] gi|294485107|gb|EFG32741.1| DNA-binding protein [Parascardovia denticolens F0305] gi|315119940|gb|EFT83072.1| transcriptional regulator [Parascardovia denticolens DSM 10105] Length = 115 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 36/72 (50%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 SD LR+R + R +R +L+Q+++ +S++ +E G++ +++D + + Sbjct: 2 DSDDKLRKRRALGDALRRLRANRRLSQEDLALEAAVDRSYLGRIERGEAAMSVDKIWQIC 61 Query: 71 HTLDTPLWKLLK 82 L+ +L Sbjct: 62 QALEVSPVELFT 73 >gi|256962367|ref|ZP_05566538.1| predicted protein [Enterococcus faecalis Merz96] gi|256952863|gb|EEU69495.1| predicted protein [Enterococcus faecalis Merz96] Length = 308 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+I N + R+ +TQ+ + + +IS+ E GK + + L+ + Sbjct: 4 RLIIGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISID 63 Query: 79 KLL 81 LL Sbjct: 64 DLL 66 >gi|300861593|ref|ZP_07107677.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|295114549|emb|CBL33186.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300849054|gb|EFK76807.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315144082|gb|EFT88098.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 257 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQ++I + IS+ ETG+S +IDN+++L+ + + +L++ Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63 >gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 198 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + D++ R +++R+ +T E+ ++TG + S +S LE G ++ ++ LA Sbjct: 1 MDDSLDRTLGAVGARLKHLRQRRTITLVELADQTGISISTLSRLEAGLRRPTLEQLLPLA 60 Query: 71 HTLDTPLWKLL 81 L +L+ Sbjct: 61 RVHGVTLDELV 71 >gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] Length = 226 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R R E ++ R +R ++Q ++ R ++ IS E GK+ Sbjct: 4 PVRGRAEKDGGRVGMK----IGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKTYP 59 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 ++ ++++L+ + L+K Sbjct: 60 DVQSLLLLSEIFGASVDSLIK 80 >gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 433 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + L+Q ++ G S IS++E +I ++ +A L+ L Sbjct: 254 LGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVENNSIYPSIPGLLKMAEILNVSPGYLF 313 >gi|160915810|ref|ZP_02078018.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] gi|158432286|gb|EDP10575.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] Length = 171 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N RN+RK L+Q+E+ + + +S+ E S + ++ LA LDT + L Sbjct: 1 MLNENIRNLRKAKGLSQEELAIKLNVVRQTVSKWEKSLSVPDSSMLVSLAEELDTSVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|152994692|ref|YP_001339527.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835616|gb|ABR69592.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 95 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F+N ++R +A LTQ+++ R +S IS LE G + + ++ AH L Sbjct: 29 FINQLLSMRVQAGLTQEQLAKRMHTQKSNISRLERGNANPSWTTLLKYAHACGFEL 84 >gi|118578914|ref|YP_900164.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501624|gb|ABK98106.1| transcriptional regulator, MerR family [Pelobacter propionicus DSM 2379] Length = 192 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R + IR+ LT++++ R +++ I+ LE G+ ++ +I + TL Sbjct: 1 MTDRNRIGDKITTIRESLGLTREQLAERCDCSETVIAGLEQGELAPSLTPLIKITRTLGV 60 Query: 76 PLWKLL 81 L LL Sbjct: 61 RLGTLL 66 >gi|78060967|ref|YP_370875.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968852|gb|ABB10231.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 193 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ ++ ++ +AH L Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 70 >gi|87122889|ref|ZP_01078757.1| putative transcriptional regulator, [Marinomonas sp. MED121] gi|86161840|gb|EAQ63137.1| putative transcriptional regulator, [Marinomonas sp. MED121] Length = 203 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 6 RDEPHLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 R + A + + + IR T +E+ RTG A+S +S++E + + Sbjct: 4 RPSLETAKAAEPDNFVEPLELGKRVKEIRLSKGWTLEEVSKRTGIARSTLSKIENDQVSP 63 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + L L L +L Sbjct: 64 SFTIVQKLIQGLGMDLPQLF 83 >gi|75758833|ref|ZP_00738946.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493674|gb|EAO56777.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 130 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R L KE+ + G A S IS E + + + + ++ + +LL Sbjct: 6 FGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFETLQKISIYFNVSTDRLL 65 >gi|329847523|ref|ZP_08262551.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842586|gb|EGF92155.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 469 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 17 RERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ER +F + +R + L+Q ++ G + S+++ LE + + ++ LA T D Sbjct: 4 VERKLFLGGRLKRLRYDLNLSQTQMAEDLGVSPSYLNHLERNQRPVTAQVLLKLAATYDL 63 Query: 76 PL 77 L Sbjct: 64 DL 65 >gi|313635253|gb|EFS01552.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL N1-067] gi|313639938|gb|EFS04624.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL S4-171] Length = 111 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + R + IS E G N D + LA + L Sbjct: 5 KFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|309776993|ref|ZP_07671962.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915203|gb|EFP60974.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 99 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 23/44 (52%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +TQ E+ R G +Q IS+ TGKS +ID + + LD Sbjct: 14 MKNMTQSELGERLGLSQKAISKYVTGKSLPSIDTLEKICSILDV 57 >gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] Length = 328 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ +Q+E+ ++ G ++ +S+ E +S +++ +I L+ Sbjct: 1 MILADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDL 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07] gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07] Length = 258 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +RKE ++Q+ + + G + IS+ E + + ++ L++ + Sbjct: 1 MSLGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQGFPETEKLLQLSNIFEVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|288905613|ref|YP_003430835.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288732339|emb|CBI13909.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 147 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R + +LTQ+E+ R + IS ETG++ N D + +L+ + + LL Sbjct: 7 LKNLRDKYQLTQEELAARVLVTRQAISRWETGETQPNTDTLKLLSKEFNVSINTLL 62 >gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829] gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] Length = 328 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ +Q+E+ ++ G ++ +S+ E +S +++ +I L+ Sbjct: 1 MILADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDL 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|217977224|ref|YP_002361371.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217502600|gb|ACK50009.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 137 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +TQ ++ Q ++S+LE G+ + + + +A L+ L+ Sbjct: 73 LKALRKWRGMTQIDLAILADLGQGYLSDLEAGRRRGSRETLHKIAEKLNIEPAWLI 128 >gi|160934847|ref|ZP_02082233.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753] gi|156866300|gb|EDO59672.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753] Length = 96 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N+R++ LTQ ++ NR +++ IS E T + D +I LA LL Sbjct: 5 FGYRLKNLRQQHHLTQTQVANRLNLSKTSISGYENNVKTPSQDVLIKLAGLYRVSTDYLL 64 >gi|85859538|ref|YP_461740.1| Cro/CI family transcriptional regulator [Syntrophus aciditrophicus SB] gi|85722629|gb|ABC77572.1| transcriptional regulator, Cro/CI family [Syntrophus aciditrophicus SB] Length = 128 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLD 74 L+E+ + R R+ TQ+++ G + IS +E GK I+ + LA + Sbjct: 56 LKEKTTPGDTTRIYREAKGWTQEKLGELLGDIPRQHISNMEHGKRPISSNTARKLAKLFN 115 Query: 75 TPLWKLL 81 P+ + + Sbjct: 116 VPMDRFI 122 >gi|78187662|ref|YP_375705.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167564|gb|ABB24662.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 135 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 30/64 (46%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L+ +R + F ++ + ++Q+++ + G +S++S + +G + + M+ Sbjct: 16 LTKKYVRRQGEFAVRLHDLMERGGMSQRQLAEKLGKKESYVSRVLSGSANPTLKTMVEFE 75 Query: 71 HTLD 74 L Sbjct: 76 VALG 79 >gi|115359612|ref|YP_776750.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170701460|ref|ZP_02892415.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171320762|ref|ZP_02909771.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064423|ref|YP_001812074.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284900|gb|ABI90416.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170133622|gb|EDT01995.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171093979|gb|EDT39090.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996940|gb|ACB67858.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 192 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ ++ ++ +A L Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 69 >gi|332362044|gb|EGJ39846.1| repressor protein [Streptococcus sanguinis SK49] Length = 75 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNR-TGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQ+ + + +S S++E+G I+ID++I LA + L L+ Sbjct: 3 KRIRDLREDTDLTQEYVAKKILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLV 61 >gi|300855490|ref|YP_003780474.1| hypothetical protein CLJU_c23140 [Clostridium ljungdahlii DSM 13528] gi|300435605|gb|ADK15372.1| conserved hypothetical protein with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 184 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +I +NIR L+ ++ TG ++ + ++E G S + + ++ L Sbjct: 6 LIIGTKLKNIRLRRNLSLDDVSKLTGVSKGMLGQIERGLSNPTVSTLWKISTGLKVS 62 >gi|298717602|ref|YP_003730244.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361791|gb|ADI78572.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 200 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK KL+ E+ R G ++ + E+E G + +I + +A L + ++ Sbjct: 25 RIKSWRKSQKLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKIAAALGVSVADIV 81 >gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 302 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK++ +TQ+++ ++ G +S+ E G S + D + +A D + L Sbjct: 4 VFSKQLQKLRKQSGITQEQLADKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNL 62 >gi|325678257|ref|ZP_08157885.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110020|gb|EGC04208.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 254 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +A L+Q+++ N+ + +S E G++ + D + +L+ D + +L Sbjct: 7 IRELRTKAGLSQEDLANKVYVTRQAVSRWEKGETVPSTDTLKLLSALFDVSINTIL 62 >gi|240851124|ref|YP_002972526.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268247|gb|ACS51835.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ R L+QK + + G + I + E G + +++ ++ +A L+ P+ Sbjct: 12 LIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPM 68 >gi|258513519|ref|YP_003189741.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777224|gb|ACV61118.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 141 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR K TQKE+ G ++S+I +E G + +++ +I +A L L+ Sbjct: 11 LGKRVAEIR--GKNTQKELAKAIGVSRSYIGNIEQGITVPSLEVLINIAQQYHVSLDWLV 68 >gi|228962123|ref|ZP_04123603.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797559|gb|EEM44692.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 66 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRKE LTQ ++ N ++ IS+ E+G + ++ +++ A+ T + L Sbjct: 8 LREIRKEKGLTQNQLANLLDLDKTSISKYESGIHSPSLRVLVLYANIFGTQIENFLT 64 >gi|298346441|ref|YP_003719128.1| hypothetical protein HMPREF0573_11315 [Mobiluncus curtisii ATCC 43063] gi|304389820|ref|ZP_07371779.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236502|gb|ADI67634.1| hypothetical protein HMPREF0573_11315 [Mobiluncus curtisii ATCC 43063] gi|304326996|gb|EFL94235.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 326 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQ E+ +G QS IS E K I+ LA + P L+ Sbjct: 17 LRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVPAHTLM 72 >gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 143 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +R LTQKE+ ++G + I E G + + + + ++ LD + Sbjct: 1 MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|225181085|ref|ZP_03734532.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168282|gb|EEG77086.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 64 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +++RK+ L Q+++ + G + I+ +E K ++ + LA L+TP+ + + Sbjct: 3 NKIKDLRKQKNLRQEDLALKLGVTRQTINAVENNKYNPTLELAMKLAKLLETPVEDIFQ 61 >gi|225405601|ref|ZP_03760790.1| hypothetical protein CLOSTASPAR_04822 [Clostridium asparagiforme DSM 15981] gi|225042865|gb|EEG53111.1| hypothetical protein CLOSTASPAR_04822 [Clostridium asparagiforme DSM 15981] Length = 70 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++++ N + R + KL+Q ++ G +++ IS +ETG+ +IL L+ Sbjct: 3 DKLVLKNRLKEARSQQKLSQSQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALERKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|160914768|ref|ZP_02076982.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] gi|158433308|gb|EDP11597.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] Length = 69 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 23/58 (39%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E ++Q+++ G + I +E G ++ + + L+ L L Sbjct: 4 KRIKIARLECDMSQEDLAKAVGATRQTIGLIEAGNYNPSLKLCLAICKALNKTLDDLF 61 >gi|85373549|ref|YP_457611.1| hypothetical protein ELI_03610 [Erythrobacter litoralis HTCC2594] gi|84786632|gb|ABC62814.1| hypothetical protein ELI_03610 [Erythrobacter litoralis HTCC2594] Length = 190 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IRK+ LT ++ I LETG +++ M +A L+ L+ Sbjct: 3 NRIRDIRKDKGLTLADLAEACEPPTTAQTIGRLETGMRNLSLKWMERIAAALEVDPEMLV 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|83955982|ref|ZP_00964493.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. NAS-14.1] gi|83839746|gb|EAP78924.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. NAS-14.1] Length = 94 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R E +T +E+ R G ++ +S +E G T+++ + +A L PL++ Sbjct: 5 IRAARLERNMTAQELAERAGVSRPLLSRVEKGDMTVSLGAVFEIATILGVPLFE 58 >gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 204 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +R +L+Q ++ + + IS E ++ +I+ +I ++ LD L + Sbjct: 1 MTFSKSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDE 60 Query: 80 LLK 82 L+ Sbjct: 61 LIT 63 >gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 71 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N + +RK+++L+Q+ + ++ G ++ IS ETG S I+++N +A + Sbjct: 2 RKQTQNRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTID 61 Query: 79 KLL 81 LL Sbjct: 62 YLL 64 >gi|288919540|ref|ZP_06413870.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288349046|gb|EFC83293.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 282 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDN 65 D P +SDA+ R F+ R+ TQ +I G QS +S++ G+ + +++ Sbjct: 17 DRPEMSDAL--ARRDIGAAFKIYRQWTGATQTQIAAVCGLPQSHVSDIMNGRRQVTSLEI 74 Query: 66 MIILAHTLDTP 76 +A + P Sbjct: 75 FERIADGIGIP 85 >gi|312196273|ref|YP_004016334.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311227609|gb|ADP80464.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 203 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R LT + + +G +++ IS++E ++ + L+ L L +L+ Sbjct: 9 LAATVRSARAARGLTVAGLADASGVSRAMISKVERAEAQPTAALLAKLSGALGLTLSELI 68 >gi|257874773|ref|ZP_05654426.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257808939|gb|EEV37759.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 112 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R + TQ+EI R G + + E GK + + LA +L Sbjct: 1 MFPCVIKELRLKKNFTQQEIAERIGITRPAYTAYELGKREPDFSTLQALADLFGVSTDQL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] Length = 509 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1] gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1] Length = 388 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +T E+ ++ G + +S+ E GK+ +++++ L + L P Sbjct: 13 RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTPPSLESIFKLTNVLQFP 65 >gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 147 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + IRKE LTQ+++ + + +S E G++T ID ++A T D P+ Sbjct: 1 MAIGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVAL 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|239817496|ref|YP_002946406.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804073|gb|ACS21140.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 173 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 A+++ E+ +G + S +S +E G + +++ + LA+ L P + Sbjct: 2 AAQVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPTSRFF 51 >gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] Length = 65 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LTQ+E+ G + I +E GK ++ +A + + Sbjct: 3 NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVKIEDIF 60 >gi|189466564|ref|ZP_03015349.1| hypothetical protein BACINT_02939 [Bacteroides intestinalis DSM 17393] gi|189434828|gb|EDV03813.1| hypothetical protein BACINT_02939 [Bacteroides intestinalis DSM 17393] Length = 101 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 25/52 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK A+LTQ E+ R G + +IS +E G + + + +A + Sbjct: 42 AQILLDARKNARLTQAELAKRIGADKGYISRIERGLTVPTVSTLYRIAAAMG 93 >gi|163790416|ref|ZP_02184847.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874320|gb|EDP68393.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 65 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q+++ + + IS +E G I+ I + + L L Sbjct: 6 RLKVARTKKDMSQQQLADAVNVTRQTISAIERGDYNPTINLCIEICKEFNLTLNDLF 62 >gi|160946894|ref|ZP_02094097.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270] gi|158447278|gb|EDP24273.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270] Length = 63 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK+ +TQ+E+ N ++ ++ LE G+ +I +A + ++ Sbjct: 3 NKLEQIRKDRGITQEELANILEVSRQTVNSLENGRYNPSIVLAFKIAKFFGLQIEEIF 60 >gi|150005928|ref|YP_001300672.1| hypothetical protein BVU_3426 [Bacteroides vulgatus ATCC 8482] gi|149934352|gb|ABR41050.1| hypothetical protein BVU_3426 [Bacteroides vulgatus ATCC 8482] Length = 165 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++R R IR + + +++ +G + + +E GK ++ +D + +A L Sbjct: 100 KDRARIGERIRQIRMDRGMEARDLARLSGIDAANLCRIENGKYSVGLDILSKIAAALGK 158 >gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104] gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104] Length = 194 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R+ L Q + G Q I+++E G + + ++A TL L + Sbjct: 7 VGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGTRAVKLAEAAVIARTLGVELDDI 65 >gi|223933601|ref|ZP_03625581.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|302024367|ref|ZP_07249578.1| DNA-binding protein [Streptococcus suis 05HAS68] gi|330833364|ref|YP_004402189.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897727|gb|EEF64108.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329307587|gb|AEB82003.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 62 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R ++Q ++ G ++ ++ +E K ++D I LA L T L L Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLCINLAKALQTDLNSLF 59 >gi|330469565|ref|YP_004407308.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812536|gb|AEB46708.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 266 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ +L+Q E+ R + +S +ETG+S + + ++ LA LD PL + Sbjct: 8 LSVGPALRRWREARRLSQLEMAARADISTRHLSFVETGRSRPSPEMVLRLAEHLDLPLRE 67 >gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family [Rhizobium etli CNPAF512] Length = 189 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|299530377|ref|ZP_07043800.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298721602|gb|EFI62536.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 291 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 34/70 (48%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H + F ++ R+ R+ +L+Q+ + + +S +ETG++ + + ++ L Sbjct: 23 HAAHKPPGALAPFGDHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRL 82 Query: 70 AHTLDTPLWK 79 A L PL + Sbjct: 83 AERLSVPLRE 92 >gi|291519992|emb|CBK75213.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 157 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+R+I N + KE +TQK++ TG +S ISE + ID +++++ L Sbjct: 53 RDRIIMNNQIFKVLKEKGITQKQLSKMTGIPESTISEWKNKGKVPGIDKILLISEALGVS 112 Query: 77 LWKLLK 82 LLK Sbjct: 113 PNTLLK 118 >gi|288870687|ref|ZP_06114960.2| putative, transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866263|gb|EFC98561.1| putative, transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 122 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R++ LT+KE+ + + +I+ +E T ++ LD + + Sbjct: 16 FGQAIKSTREKKGLTRKELAAQIRISPRYIASIENSGQTPSLQVFYRFVTCLDMSVDQFF 75 Query: 82 KP 83 P Sbjct: 76 FP 77 >gi|229070989|ref|ZP_04204216.1| transcriptional regulator, XRE [Bacillus cereus F65185] gi|228712171|gb|EEL64119.1| transcriptional regulator, XRE [Bacillus cereus F65185] Length = 108 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ ++S I E + + + +I +A + Sbjct: 2 KTFGNIIRDLRKQKGITQKELALSLKLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|227485924|ref|ZP_03916240.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227236157|gb|EEI86172.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + +R+E LT +E G +S IS +E G + ++ + + + Sbjct: 3 ENIKKLRQELGLTMEEFGKNLGVTRSAISNIENGYRNLTEQMILAICNVYNV 54 >gi|269797322|ref|YP_003311222.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093951|gb|ACZ23942.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 290 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R RK++ L+Q ++ ++ I++ E+G +I N+ L+ + + +LL Sbjct: 3 FNEKLREYRKQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDELL 62 >gi|224583902|ref|YP_002637700.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468429|gb|ACN46259.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 185 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|168241154|ref|ZP_02666086.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450448|ref|YP_002045645.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408752|gb|ACF68971.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339362|gb|EDZ26126.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|218960438|ref|YP_001740213.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] gi|167729095|emb|CAO80006.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] Length = 356 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK ++ KE+ + G + IS E GK + + ++ ++ + PL L+ Sbjct: 3 VGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEYLV 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|163787647|ref|ZP_02182094.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium ALC-1] gi|159877535|gb|EDP71592.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium ALC-1] Length = 363 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ F IRK LTQ E+ + I +E+G + I++ L + Sbjct: 3 KLDFGKELIKIRKARGLTQAEVAEKCNVTTRTIQRIESGAVKPRSSTIKIISEFLGVNFF 62 Query: 79 K 79 + Sbjct: 63 E 63 >gi|163816403|ref|ZP_02207769.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC 27759] gi|158448400|gb|EDP25395.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC 27759] Length = 213 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RN R + +TQKE+ ++ G +S I E G + ++ +A+ L + L P Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70 >gi|62180172|ref|YP_216589.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127805|gb|AAX65508.1| putative oxidoreductase/putative repressor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714645|gb|EFZ06216.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|16764949|ref|NP_460564.1| repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992775|ref|ZP_02573871.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16420129|gb|AAL20523.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205329040|gb|EDZ15804.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246798|emb|CBG24612.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993529|gb|ACY88414.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158133|emb|CBW17630.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912593|dbj|BAJ36567.1| putative repressor protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224229|gb|EFX49292.1| Transcriptional regulator yidN, Cro/CI family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129874|gb|ADX17304.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988492|gb|AEF07475.1| putative repressor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|16799238|ref|NP_469506.1| hypothetical protein lin0161 [Listeria innocua Clip11262] gi|16412580|emb|CAC95394.1| lin0161 [Listeria innocua Clip11262] Length = 117 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + + + IS E G N D + LA + L Sbjct: 11 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 70 Query: 80 LL 81 Sbjct: 71 FF 72 >gi|325972297|ref|YP_004248488.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027535|gb|ADY14294.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 111 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK++ L QK I + G QS I+ E G + + LA P K+L Sbjct: 9 GNRLKELRKQSGLMQKHIADYLGVDQSLIARFENGDRAMTSATLEKLAMLYCCPASKIL 67 >gi|304403822|ref|ZP_07385484.1| stress protein [Paenibacillus curdlanolyticus YK9] gi|304346800|gb|EFM12632.1| stress protein [Paenibacillus curdlanolyticus YK9] Length = 250 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGK-STINIDNMIILAHTL 73 L E +N +R+ +TQK++ + G+ + S IS LE G+ + +++LA L Sbjct: 181 LYETFQIGHNVERVRRSIGMTQKQLAEKIGYKSASPISRLERGELDRFSHSQLLLLAEAL 240 Query: 74 DTPLWKLL 81 + +LL Sbjct: 241 NVTSRQLL 248 >gi|302536140|ref|ZP_07288482.1| DNA-binding protein [Streptomyces sp. C] gi|302445035|gb|EFL16851.1| DNA-binding protein [Streptomyces sp. C] Length = 287 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 D D LR F + RK A LTQ++ + G++ +++ +E G+ ++ Sbjct: 18 DNQVEPDPDLRN---FGEVLKASRKRAGLTQEQFGPKVGYSVQYVASVEQGRRHPSV 71 >gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 328 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ +Q+E+ ++ G ++ +S+ E +S +++ +I L+ Sbjct: 1 MILADKILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFGVSTDL 60 Query: 80 LLK 82 L+K Sbjct: 61 LVK 63 >gi|228905100|ref|ZP_04069132.1| hypothetical protein bthur0014_62120 [Bacillus thuringiensis IBL 4222] gi|228854543|gb|EEM99169.1| hypothetical protein bthur0014_62120 [Bacillus thuringiensis IBL 4222] Length = 68 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + R +A LTQ+++ + G + +S +E GK ++ + + + ++ L ++ Sbjct: 3 NHVKIGRVKANLTQQQLADVVGITRQTVSLIEKGKYNPSLKLCLQICYAVNAKLDEIF 60 >gi|229177518|ref|ZP_04304897.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W] gi|228605965|gb|EEK63407.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W] Length = 60 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q+++ G + I LE GK + +A L P+ L Sbjct: 1 MKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKVPIEVLF 56 >gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] Length = 174 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + RK+ L+Q+E+ + G ++ IS+ ET ++ +I +A + L +L+ Sbjct: 23 LGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQSKKMASIYNVSLDELI 82 >gi|187929409|ref|YP_001899896.1| putative phage repressor [Ralstonia pickettii 12J] gi|187726299|gb|ACD27464.1| putative phage repressor [Ralstonia pickettii 12J] Length = 302 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F N R + +++Q+ + + +QS I+++E G++ + ++ LA L P+ L Sbjct: 59 FANRVLARRTQLEMSQEALAKKARLSQSTIAQIERGRNRGS-KYVVALADALLVPVRWL 116 >gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94] gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94] Length = 218 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77 N R++A LTQ + + G + IS+ E G + N D + +A L Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSFNGDTLFKVAAALGCSP 60 >gi|196045440|ref|ZP_03112671.1| conserved domain protein [Bacillus cereus 03BB108] gi|196023647|gb|EDX62323.1| conserved domain protein [Bacillus cereus 03BB108] Length = 68 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + R +A LTQ+++ + G + +S +E GK ++ + + + ++ L ++ Sbjct: 3 NHVKIGRVKANLTQQQLADVVGITRQTVSLIEKGKYNPSLKLCLQICYAVNAKLDEIF 60 >gi|167621033|ref|ZP_02389664.1| gp68 [Burkholderia thailandensis Bt4] Length = 103 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R ++TQ + G ++ ++S++ET + D + +A L P+ L++ Sbjct: 41 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 97 >gi|297585237|ref|YP_003701017.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143694|gb|ADI00452.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 195 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWK 79 + +N + +RKE ++ +++ +G ++S + ++E + ++ + LA LD + Sbjct: 1 MLKDNLKKLRKERGMSMRKLAELSGVSRSTLHDIENLNMKSTTLNTLEKLADALDVSVNY 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|254374210|ref|ZP_04989692.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151571930|gb|EDN37584.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 75 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+ LTQ ++ +G +I E+E GKST +I +I LA +L Sbjct: 15 IKKARKKQGLTQADLTGISGLGTRFIGEVENGKSTAHIGKVIQLASSLG 63 >gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 273 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+E L+Q+++ ++ ++ +S+ E+ ++ + +I L+ + L L+ Sbjct: 3 FCDKLIELRRERGLSQEQLADQLDVSRQSVSKWESDQTMPELSKLITLSEIFEVSLDYLM 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|134292421|ref|YP_001116157.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135578|gb|ABO56692.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 193 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R+ K T + G ++ ++S++E G ++ ++ ++ +A L Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 70 >gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 126 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RKE K+TQ+E+ N G ++S +S ET K + + LA + + L Sbjct: 1 MLYERLVELRKERKMTQEELANVLGISRSALSLYETDKRQPDFQTICRLADFFNVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|322372373|ref|ZP_08046909.1| transcriptional regulator [Streptococcus sp. C150] gi|321277415|gb|EFX54484.1| transcriptional regulator [Streptococcus sp. C150] Length = 307 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R +R LT+++ + ++ +ETGKS ++ + LA L+ L +L Sbjct: 6 FGHRLRELRLAQGLTKEKFCEGDEVLSVRQLTRIETGKSQPKLETLEHLARRLNISLSEL 65 Query: 81 L 81 L Sbjct: 66 L 66 >gi|315655012|ref|ZP_07907916.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315490668|gb|EFU80289.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 326 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQ E+ +G QS IS E K I+ LA + P L+ Sbjct: 17 LRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVPAHTLM 72 >gi|290509145|ref|ZP_06548516.1| conserved hypothetical DNA-binding protein [Klebsiella sp. 1_1_55] gi|289778539|gb|EFD86536.1| conserved hypothetical DNA-binding protein [Klebsiella sp. 1_1_55] Length = 200 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK+ K++ E+ R G ++ + E+E ++ +I + LA + + Sbjct: 20 EAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLCRLATAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|228931333|ref|ZP_04094262.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828336|gb|EEM74042.1| Transcription regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 135 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK L+Q+++ ++ G + IS+ E K T +I+N+I+L+ ++ L L+K Sbjct: 11 RKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSDEMNISLDNLIK 63 >gi|224825808|ref|ZP_03698912.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224602032|gb|EEG08211.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 65 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + RK LTQ ++ G +Q+ IS+LE G ++ D LA L + K+L P Sbjct: 4 MKEARKRLGLTQNDLAKAVGASQAHISKLENGTEQVSPDLAKRLAVELGLDVVKILYP 61 >gi|149006628|ref|ZP_01830327.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP18-BS74] gi|307127920|ref|YP_003879951.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|147761926|gb|EDK68889.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP18-BS74] gi|306484982|gb|ADM91851.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|332072878|gb|EGI83359.1| transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein [Streptococcus pneumoniae GA17545] Length = 283 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + F+ IRK LTQ+++ + ++ ++ +E GK + +NM+ L +D L Sbjct: 2 RWDYGQIFKEIRKSKGLTQQDVCGQV-IHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLA 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|104781203|ref|YP_607701.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110190|emb|CAK14897.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 181 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ L+Q+E+ R+G S IS++E + + ++ ++ L + L + Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEFF 62 >gi|53721418|ref|YP_110403.1| DNA-binding regulatory protein [Burkholderia pseudomallei K96243] gi|52211832|emb|CAH37831.1| putative DNA-binding regulatory protein [Burkholderia pseudomallei K96243] Length = 81 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RKE ++Q+ + + +S + ++E G+ + N+I +A + +L Sbjct: 16 LLGAAIRARRKELAMSQEVLADFVEIDRSHLGKIERGERNVTFMNIIRIARVMQLLPSEL 75 Query: 81 LK 82 L+ Sbjct: 76 LR 77 >gi|15903593|ref|NP_359143.1| hypothetical protein spr1550 [Streptococcus pneumoniae R6] gi|116516974|ref|YP_816973.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae D39] gi|148989361|ref|ZP_01820729.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP6-BS73] gi|149002001|ref|ZP_01826955.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP14-BS69] gi|168493613|ref|ZP_02717756.1| transcriptional activator, Rgg/GadR/MutR family, C- domain [Streptococcus pneumoniae CDC3059-06] gi|221232442|ref|YP_002511595.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855136|ref|YP_002736648.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae JJA] gi|237649247|ref|ZP_04523499.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae CCRI 1974] gi|237822007|ref|ZP_04597852.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae CCRI 1974M2] gi|15459215|gb|AAL00354.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077550|gb|ABJ55270.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae D39] gi|147759810|gb|EDK66800.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP14-BS69] gi|147925111|gb|EDK76191.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP6-BS73] gi|183576475|gb|EDT97003.1| transcriptional activator, Rgg/GadR/MutR family, C- domain [Streptococcus pneumoniae CDC3059-06] gi|220674903|emb|CAR69478.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225722302|gb|ACO18155.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae JJA] gi|332074044|gb|EGI84522.1| transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein [Streptococcus pneumoniae GA41301] Length = 283 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + F+ IRK LTQ+++ + ++ ++ +E GK + +NM+ L +D L Sbjct: 2 RWDYGQIFKEIRKSKGLTQQDVCGQV-IHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLA 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|19553167|ref|NP_601169.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62390802|ref|YP_226204.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21324732|dbj|BAB99355.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41326140|emb|CAF20303.1| Predicted transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 107 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R+ R + +T +E+ + + ++SELE G+ ++ + + + H L Sbjct: 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80 Query: 74 DTPLWKLL 81 + +L Sbjct: 81 GASVADVL 88 >gi|22125904|ref|NP_669327.1| hypothetical protein y2012 [Yersinia pestis KIM 10] gi|45441900|ref|NP_993439.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Microtus str. 91001] gi|51596563|ref|YP_070754.1| DNA-binding phage-related protein [Yersinia pseudotuberculosis IP 32953] gi|108807662|ref|YP_651578.1| putative DNA-binding phage-related protein [Yersinia pestis Antiqua] gi|108811942|ref|YP_647709.1| DNA-binding phage-related protein [Yersinia pestis Nepal516] gi|145598128|ref|YP_001162204.1| DNA-binding phage-related protein [Yersinia pestis Pestoides F] gi|149365768|ref|ZP_01887803.1| putative DNA-binding phage-related protein [Yersinia pestis CA88-4125] gi|153950887|ref|YP_001400792.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|162418253|ref|YP_001606667.1| DNA-binding protein [Yersinia pestis Angola] gi|165927217|ref|ZP_02223049.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938615|ref|ZP_02227171.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010729|ref|ZP_02231627.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210450|ref|ZP_02236485.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400901|ref|ZP_02306407.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422141|ref|ZP_02313894.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424955|ref|ZP_02316708.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467109|ref|ZP_02331813.1| DNA-binding protein [Yersinia pestis FV-1] gi|170024166|ref|YP_001720671.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895621|ref|YP_001872733.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218929412|ref|YP_002347287.1| putative DNA-binding phage-related protein [Yersinia pestis CO92] gi|229837841|ref|ZP_04458000.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229894999|ref|ZP_04510177.1| putative DNA-binding phage-related protein [Yersinia pestis Pestoides A] gi|229898402|ref|ZP_04513549.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Orientalis str. India 195] gi|229902249|ref|ZP_04517369.1| putative DNA-binding phage-related protein [Yersinia pestis Nepal516] gi|294503665|ref|YP_003567727.1| putative DNA-binding phage-related protein [Yersinia pestis Z176003] gi|21958841|gb|AAM85578.1|AE013804_2 hypothetical [Yersinia pestis KIM 10] gi|45436763|gb|AAS62316.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Microtus str. 91001] gi|51589845|emb|CAH21477.1| putative DNA-binding phage-related protein [Yersinia pseudotuberculosis IP 32953] gi|108775590|gb|ABG18109.1| DNA-binding phage-related protein [Yersinia pestis Nepal516] gi|108779575|gb|ABG13633.1| putative DNA-binding phage-related protein [Yersinia pestis Antiqua] gi|115348023|emb|CAL20948.1| putative DNA-binding phage-related protein [Yersinia pestis CO92] gi|145209824|gb|ABP39231.1| DNA-binding phage-related protein [Yersinia pestis Pestoides F] gi|149292181|gb|EDM42255.1| putative DNA-binding phage-related protein [Yersinia pestis CA88-4125] gi|152962382|gb|ABS49843.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|162351068|gb|ABX85016.1| DNA-binding protein [Yersinia pestis Angola] gi|165913489|gb|EDR32110.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920885|gb|EDR38133.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990431|gb|EDR42732.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207630|gb|EDR52110.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958953|gb|EDR55974.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049754|gb|EDR61162.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056142|gb|EDR65920.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750700|gb|ACA68218.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] gi|186698647|gb|ACC89276.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] gi|229680584|gb|EEO76680.1| putative DNA-binding phage-related protein [Yersinia pestis Nepal516] gi|229688692|gb|EEO80761.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694207|gb|EEO84254.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702094|gb|EEO90115.1| putative DNA-binding phage-related protein [Yersinia pestis Pestoides A] gi|262362216|gb|ACY58937.1| putative DNA-binding phage-related protein [Yersinia pestis D106004] gi|262365549|gb|ACY62106.1| putative DNA-binding phage-related protein [Yersinia pestis D182038] gi|294354124|gb|ADE64465.1| putative DNA-binding phage-related protein [Yersinia pestis Z176003] Length = 107 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R++ LTQ+E+ R G + IS +E G + N+ + A L Sbjct: 35 RQAMMTELKAARQQCNLTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 90 >gi|312126969|ref|YP_003991843.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776988|gb|ADQ06474.1| helix-turn-helix domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 103 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK T KEI TG + S+IS +E G +++N+ ++ + L + Sbjct: 3 VGSRIRYFRKLYNKTLKEISLDTGLSISFISNIEKGIKKCSLENLEVICSAIGITLSEFF 62 >gi|312865753|ref|ZP_07725975.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098628|gb|EFQ56850.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 209 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK+ TQ+ + TG + I +E G + +++ + ++A+ L+ + +L K Sbjct: 7 VATLRKQRGWTQERLAEETGLSVRTIQRIERGDDS-SLETLGLVANALELSIKELFK 62 >gi|332652423|ref|ZP_08418168.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332517569|gb|EGJ47172.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 75 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 13 DAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIIL 69 + RE+ I F + RK +TQ+ + G + S+++++E+ ++++ + + Sbjct: 2 ETAYREQFIRFGLKVQYYRKLHGMTQEAFADAIGKSWSFVAKVESPTRPFGVSMETIFKI 61 Query: 70 AHTLDTPLWKLLK 82 A L+ P+ KL + Sbjct: 62 AEVLEIPVSKLFE 74 >gi|307352509|ref|YP_003893560.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155742|gb|ADN35122.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 64 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+ + G + I +E GK ++D +A + + ++ Sbjct: 3 NRIKVFRAMHDLTQEGLAKELGVTRQTILAIEKGKYDPSLDLAFKIAKYFNVKIEEVF 60 >gi|288935075|ref|YP_003439134.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889784|gb|ADC58102.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 200 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK+ K++ E+ R G ++ + E+E ++ +I + LA + + Sbjct: 20 EAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLCRLATAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 108 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 37/63 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +N +N RK KLTQ+E+ ++ G + +++ E+GK ++ + + ++ LDTP+ Sbjct: 3 KLIGSNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSD 62 Query: 80 LLK 82 K Sbjct: 63 FFK 65 >gi|126652436|ref|ZP_01724608.1| Transcriptional regulator [Bacillus sp. B14905] gi|126590707|gb|EAZ84822.1| Transcriptional regulator [Bacillus sp. B14905] Length = 183 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 31/59 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + IR++ L+ ++ TG +++ ++++E G++ + + +A + LL+P Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRISFSSLLQP 69 >gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T ++ + +S++E G ++ ++ + L+ L+TP+ Sbjct: 45 GAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALNTPISSFF 103 >gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 122 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ L Q+E+ G ++ +S E + + + + LA + + L+ Sbjct: 3 YGTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDYLV 62 >gi|296163497|ref|ZP_06846243.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295886255|gb|EFG66127.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 124 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +A +TQ+++ G IS E G + + + LA P L+ Sbjct: 16 GQALARARLDADMTQEQVSEALGVNTETISRFERGHTAPPLFRLFELAEVYGVPPETLI 74 >gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 64 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +RKE +TQ+E+ G + I +E GK ++ + + + + + Sbjct: 3 NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYDPSLKLALKIVKFFGVKVEDVFE 61 >gi|152998212|ref|YP_001343047.1| helix-turn-helix domain-containing protein [Marinomonas sp. MWYL1] gi|150839136|gb|ABR73112.1| helix-turn-helix domain protein [Marinomonas sp. MWYL1] Length = 69 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK ++Q+ + ++ +S++ +E G+ + + + +A +++ KLL Sbjct: 8 VGELIRSQRKARGISQEALAAKSKIDRSYMGRIERGEVNVTLKALWDIAASMEIST-KLL 66 Query: 82 KP 83 P Sbjct: 67 IP 68 >gi|331699234|ref|YP_004335473.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953923|gb|AEA27620.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 196 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+E LT + TG + S +S LE+G ++ ++ +A L L+ Sbjct: 15 VGPRLAELRRERDLTLAALSRTTGISTSTLSRLESGHRRATLELLLPIARAYGVGLDDLV 74 >gi|313610053|gb|EFR85399.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 89 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + IRK L+Q+EI + + IS+ E G S + D +I ++ L+T + L Sbjct: 1 MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVSTL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 268 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ RK+ K TQ+E+ + G + IS+ E G +I ++ L L + Sbjct: 2 QQKEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVGYPDISLLLPLCRELGIEV 61 Query: 78 WKLL 81 +LL Sbjct: 62 SQLL 65 >gi|307285484|ref|ZP_07565623.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306502708|gb|EFM71973.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 231 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 27/53 (50%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R E LTQ E+ + + IS E KS NID +I L+ + L +LLK Sbjct: 3 RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLK 55 >gi|304315449|ref|YP_003850596.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588908|gb|ADL59283.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 67 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + LTQ+E+ G + I LE G+ ++ + L + Sbjct: 5 IREYRNKLGLTQEELAEMVGVTRQTIITLERGRYNPSLILAHRITRALGGEHIE 58 >gi|296110828|ref|YP_003621209.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154] gi|295832359|gb|ADG40240.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154] Length = 162 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ RKE K+TQ + + IS E+G++ +IDN+I++A L+ L +LL Sbjct: 3 FSELIKSQRKERKMTQVDFSELLMVSSKTISNWESGRTLPDIDNVILIAKKLNISLDQLL 62 >gi|293380851|ref|ZP_06626887.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312984051|ref|ZP_07791399.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] gi|290922524|gb|EFD99490.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310894553|gb|EFQ43627.1| putative transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 194 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + FR +RK K++ + G ++S + E G++ ++I+ + L + Sbjct: 2 KETYGRKFRKLRKATKISSSKAAEAVGISRSKLERWERGEAGLDIEKVFKLLEVIHVQKI 61 Query: 79 KLL 81 Sbjct: 62 DFF 64 >gi|229004528|ref|ZP_04162267.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228756719|gb|EEM06025.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] Length = 404 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +LTQ E+ + +S +S++E GK+T ++ + LA L+ LL Sbjct: 4 LGEKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|228477905|ref|ZP_04062519.1| putative DNA-binding protein [Streptococcus salivarius SK126] gi|228250395|gb|EEK09635.1| putative DNA-binding protein [Streptococcus salivarius SK126] Length = 307 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R +R LT+++ + ++ +ETGKS ++ + LA L+ L +L Sbjct: 6 FGHRLRELRLAQGLTKEKFCEGDEVLSVRQLTRIETGKSQPKLETLEHLARRLNISLSEL 65 Query: 81 L 81 L Sbjct: 66 L 66 >gi|227357992|ref|ZP_03842334.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906] gi|227161727|gb|EEI46759.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906] Length = 100 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R ++ K + + +Q IS LE G++ I+ ++ L + LD ++ L+ Sbjct: 12 VGSFIRRHRTLLGISGKSLGKKLNLSQQHISRLERGQTNFTIEIILYLLNELDKTIFDLV 71 >gi|213970379|ref|ZP_03398508.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] gi|301381163|ref|ZP_07229581.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato Max13] gi|302062403|ref|ZP_07253944.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato K40] gi|302132576|ref|ZP_07258566.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924850|gb|EEB58416.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] Length = 212 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + L+ + TG +++ ++++E+G+S +I + +A L + L Sbjct: 32 VARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSIAAFL 91 Query: 82 K 82 + Sbjct: 92 E 92 >gi|307150337|ref|YP_003885721.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980565|gb|ADN12446.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 116 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIILAHTLDTPLWK 79 F R RK+ L+Q+E+ G +++S+LE ++ D + LA L + Sbjct: 5 FGQIIRKARKDKGLSQRELAESLGLDFTYLSKLENNRADYAPKEDIIRALAENLGLDAEE 64 Query: 80 LL 81 L+ Sbjct: 65 LI 66 >gi|120610433|ref|YP_970111.1| putative prophage repressor [Acidovorax citrulli AAC00-1] gi|120588897|gb|ABM32337.1| phage repressor protein [Acidovorax citrulli AAC00-1] Length = 230 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 D I + I R R+ A LTQ + R +Q I +E+G D ++ + Sbjct: 2 QSFDTITPVKTI-AERLRAARERAGLTQPALAQRANVSQGTIGNIESGLRKRPRD-LLAI 59 Query: 70 AHTLDT-PLW 78 A L PLW Sbjct: 60 AAALHVSPLW 69 >gi|113461078|ref|YP_719146.1| hypothetical protein HS_0935 [Haemophilus somnus 129PT] gi|112823121|gb|ABI25210.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 143 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ K+TQ+ + R +++ ++ E G+S I I+ ++ +A L+ PL L+ Sbjct: 9 ENIRTFRENKKMTQEMMAERLNVSKTCYAKWERGESQIRIERLVQIAQILEVPLEDLM 66 >gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925] gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925] Length = 108 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RK L Q G +Q+ IS +E G + + + + Sbjct: 3 ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTINDICRIYNVSP 56 >gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 116 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +++R EA LTQKEI + Q + E G + + + A D L Sbjct: 1 MFTERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGGRKPSSETLNKFAEFFDVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|257879449|ref|ZP_05659102.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813677|gb|EEV42435.1| predicted protein [Enterococcus faecium 1,230,933] Length = 133 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 10 HLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 H + I + I R R E +Q ++ G + + +S +E G++ +++ Sbjct: 7 HSMEVIETQPEIDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAM 66 Query: 66 MIILAHTLDT 75 ++ LA L+ Sbjct: 67 LLKLAFVLEK 76 >gi|228996851|ref|ZP_04156485.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] gi|228762912|gb|EEM11825.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] Length = 404 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +LTQ E+ + +S +S++E GK+T ++ + LA L+ LL Sbjct: 4 LGEKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|225378523|ref|ZP_03755744.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans DSM 16841] gi|257438006|ref|ZP_05613761.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|225209626|gb|EEG91980.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans DSM 16841] gi|257199666|gb|EEU97950.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 159 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIIL 69 I +ER M+F + R EA LTQ E+ + G I E G + + + + Sbjct: 13 VIKKERGIPMVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKI 72 Query: 70 AHTLDTPLWKLL 81 A L+T LL Sbjct: 73 ADALNTTTEYLL 84 >gi|190570721|ref|YP_001975079.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356993|emb|CAQ54382.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 304 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G++ + +D + +A L + LL Sbjct: 165 GKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 223 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R E TQK++ + G I + E G I+I+ + + L + L+ Sbjct: 13 VGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72 >gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 69 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E TQ+E+ R G ++ I+ LE K ++ +A+ + L + Sbjct: 13 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSLTDVF 64 >gi|108803769|ref|YP_643706.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765012|gb|ABG03894.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 155 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLWKL 80 R +R+ A L+Q+E+ G++++W++ELE T ++ ++ L L + L Sbjct: 8 GARLRELRERAGLSQEELSEIVGYSRTWVAELERQSRTYVLEILVQKLVAALGVGISDL 66 Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS----TINIDNMIILAHTLDTPLWKLL 81 R +R+ A L+Q+E+ R G A ++ E +++ + LA L+T L+ Sbjct: 89 LRALRERAGLSQEELERRAGLAPGSVARAEGAGEGDEIRASVETLWRLARALETSPTHLV 148 >gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 152 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R +R E K+ Q+++ G ++S I E G+ ++ + +A L Sbjct: 11 ILGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGEREPSLILLREIADFFRVSADFL 70 Query: 81 L 81 L Sbjct: 71 L 71 >gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 476 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 20 MIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I+ R +R+E + Q E+ G + S+++++E + + ++ +A Sbjct: 8 KIYAHAKLRRLRRERGMNQVELARALGLSTSYLNQIEHSQRPLTAPVLLRIAEVFGVDP 66 >gi|325977281|ref|YP_004286997.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177209|emb|CBZ47253.1| Uncharacterized HTH-type transcriptional regulator HI0659 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 91 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +A LTQ+++ + QS I+ +E G +I+ M LA L+ L Sbjct: 36 VANARSKAGLTQRQLSELSHVPQSTIARIERG-HNTSIETMSKLAVALNQEL 86 >gi|326772314|ref|ZP_08231599.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces viscosus C505] gi|326638447|gb|EGE39348.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces viscosus C505] Length = 107 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R E + + R+ N R A ++Q E+ R G QS IS +E G Sbjct: 25 MTEAERAEYNRAAIETEARLQLAELVYNARAAAGISQTELARRAGTRQSVISAIENGAQA 84 Query: 61 INIDNMIILAHTLD 74 + +AH L Sbjct: 85 PGGVMLARIAHALG 98 >gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104] Length = 167 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ+E+ N T I E G++ I D +LA + LL Sbjct: 5 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLL 62 >gi|281491219|ref|YP_003353199.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374960|gb|ADA64478.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 104 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + RK LTQKE+ ++ ++ E G + +I+ + + TL LL Sbjct: 6 LGDKLKASRKSKNLTQKELADKINVKTRTVASYEQGSAYPSIEVLGKICDTLGISSDYLL 65 >gi|284989101|ref|YP_003407655.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062346|gb|ADB73284.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 213 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R IR+ A L+Q+E+ R G ++S ++ E+G+S I++ + A L L Sbjct: 10 LRRIRRTADLSQRELAARIGISKSAVAAAESGRSGIDVRALARAAEVAGLRLALL 64 >gi|29375148|ref|NP_814301.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256852520|ref|ZP_05557895.1| transcriptional regulator [Enterococcus faecalis T8] gi|256964687|ref|ZP_05568858.1| CylR2 [Enterococcus faecalis HIP11704] gi|257085876|ref|ZP_05580237.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|307272302|ref|ZP_07553561.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|21693300|gb|AAM75247.1|AF454824_42 EF0042 [Enterococcus faecalis] gi|29342607|gb|AAO80372.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256712067|gb|EEU27100.1| transcriptional regulator [Enterococcus faecalis T8] gi|256955183|gb|EEU71815.1| CylR2 [Enterococcus faecalis HIP11704] gi|256993906|gb|EEU81208.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|306511024|gb|EFM80035.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315027717|gb|EFT39649.1| helix-turn-helix protein [Enterococcus faecalis TX2137] Length = 66 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 35/62 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +NN + IR++ K++Q E+ ++ I+ +E K ++ + +A+ LDTPL + Sbjct: 1 MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLDTPLEDI 60 Query: 81 LK 82 + Sbjct: 61 FQ 62 >gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] Length = 120 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N+RK+ LTQ + + +QS I+ E+ + +++ D++I L+ Sbjct: 1 MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 164 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ+E+ N T I E G++ I D +LA + LL Sbjct: 2 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLL 59 >gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150] gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150] Length = 229 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ ++Q + G ++S E GK+ N N+ +LA Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56 >gi|289825657|ref|ZP_06544828.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 185 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|262197634|ref|YP_003268843.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080981|gb|ACY16950.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 147 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R LTQ++ R + + + +E G S ++ + +A L Sbjct: 7 KSIGSAARQARTALGLTQEDAAERLDVSVEFYARIERGNSLPSVPTLARIAAVLGVSADA 66 Query: 80 LL 81 LL Sbjct: 67 LL 68 >gi|258406482|ref|YP_003199224.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798709|gb|ACV69646.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 117 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + LTQ E+ +TG AQS +S +E GK I D LA LD Sbjct: 62 LRAARNRSGLTQIELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLD 110 >gi|322614855|gb|EFY11780.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619297|gb|EFY16177.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623108|gb|EFY19950.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628399|gb|EFY25187.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322638630|gb|EFY35325.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640981|gb|EFY37628.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645436|gb|EFY41964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651679|gb|EFY48051.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654419|gb|EFY50741.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661261|gb|EFY57487.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665035|gb|EFY61223.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667779|gb|EFY63939.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671809|gb|EFY67930.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677145|gb|EFY73209.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680191|gb|EFY76230.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685379|gb|EFY81375.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194734|gb|EFZ79923.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199893|gb|EFZ84981.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204415|gb|EFZ89423.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205808|gb|EFZ90771.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213863|gb|EFZ98638.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218217|gb|EGA02928.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219101|gb|EGA03605.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223909|gb|EGA08207.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231997|gb|EGA16104.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234524|gb|EGA18611.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237976|gb|EGA22035.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323246445|gb|EGA30427.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253730|gb|EGA37557.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259005|gb|EGA42655.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260789|gb|EGA44393.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266543|gb|EGA50030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271267|gb|EGA54694.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|213857689|ref|ZP_03384660.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|204927953|ref|ZP_03219154.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323295|gb|EDZ08491.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322634804|gb|EFY31535.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|323243422|gb|EGA27441.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 185 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|195873244|ref|ZP_02696881.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197264542|ref|ZP_03164616.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|195634360|gb|EDX52712.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242797|gb|EDY25417.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 185 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|194735253|ref|YP_002114629.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197300747|ref|ZP_02660781.2| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194710755|gb|ACF89976.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291093|gb|EDY30446.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 185 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|194471472|ref|ZP_03077456.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205358313|ref|ZP_02655078.2| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194457836|gb|EDX46675.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335557|gb|EDZ22321.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 185 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|194445981|ref|YP_002040851.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404644|gb|ACF64866.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|197251173|ref|YP_002146431.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238911841|ref|ZP_04655678.1| transcriptional regulator, XRE family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197214876|gb|ACH52273.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|167549918|ref|ZP_02343676.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325107|gb|EDZ12946.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|161613938|ref|YP_001587903.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363302|gb|ABX67070.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|154687496|ref|YP_001422657.1| YvaO [Bacillus amyloliquefaciens FZB42] gi|126363006|emb|CAM35822.1| hypothetical protein YvaO [Bacillus amyloliquefaciens FZB42] gi|154353347|gb|ABS75426.1| YvaO [Bacillus amyloliquefaciens FZB42] Length = 143 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R+ KLT ++ +G + + IS +E G + LA TL P +L Sbjct: 4 FGKQLRELRRARKLTVNQLAVYSGVSSATISRIENGHRGIPKPATIRKLADTLKIPYEEL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|157369697|ref|YP_001477686.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157321461|gb|ABV40558.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 189 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/71 (12%), Positives = 32/71 (45%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + + + ++R++ + +E+ +TG +++ +S +E +++ + L Sbjct: 1 MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLC 60 Query: 71 HTLDTPLWKLL 81 + +LL Sbjct: 61 SAYGLTMSRLL 71 >gi|110799647|ref|YP_695478.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110803761|ref|YP_698224.1| transcriptional regulator [Clostridium perfringens SM101] gi|169346849|ref|ZP_02865797.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|110674294|gb|ABG83281.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110684262|gb|ABG87632.1| transcriptional regulator [Clostridium perfringens SM101] gi|169296908|gb|EDS79032.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 69 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R A ++Q E+ + G A+ I+ +E K ++D I +A L T L L Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59 >gi|16760275|ref|NP_455892.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141958|ref|NP_805300.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213021706|ref|ZP_03336153.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052213|ref|ZP_03345091.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416599|ref|ZP_03349743.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426252|ref|ZP_03359002.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582138|ref|ZP_03363964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|25512933|pir||AG0668 probable DNA-binding protein STY1459 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502570|emb|CAD01720.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137587|gb|AAO69149.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|306830740|ref|ZP_07463904.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427087|gb|EFM30195.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 68 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R E L+Q + G +++ IS +ETG+ + ++L LD L Sbjct: 9 NNVKQSRLEKNLSQATLAKLVGVSRNTISSIETGQFSPTAKLALLLCIALDKKFEDLF 66 >gi|296451357|ref|ZP_06893095.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296880293|ref|ZP_06904258.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296259773|gb|EFH06630.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296428736|gb|EFH14618.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 106 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +RKE LTQ+E+ + G +Q + ET + + LA D + L Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|253315441|ref|ZP_04838654.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|315130180|gb|EFT86168.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 61 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +TQKE+ N+ G + IS +E G ++ + L+ L ++ Sbjct: 1 MKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIF 56 >gi|237725492|ref|ZP_04555973.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436179|gb|EEO46256.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 162 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ER+ R IR+E + +++ G + +S +E GK ++ ID + +A L Sbjct: 98 ERVRIGGRIRQIREERNMEARDLAKLAGIDAANLSRIENGKYSVGIDILSKIAAVLGK 155 >gi|228920891|ref|ZP_04084230.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838822|gb|EEM84124.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 126 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I + R +R+ L+QK + + G + +S E G+ + + ++A D Sbjct: 6 ILGDRIRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIADYFDV 60 >gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 115 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++R LTQKE+ + IS E G++ +ID + LAH + + + Sbjct: 4 AQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNEPSIDTLKDLAHIFNVSVDYM 61 >gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family [Rhizobium etli IE4771] Length = 190 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R E LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|182433810|ref|YP_001821529.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|182440913|ref|YP_001828632.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462326|dbj|BAG16846.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469429|dbj|BAG23949.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 87 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E T E+ +RTG A+ + E+E G++ ++ +AH LD P+ L Sbjct: 17 LARLRSEHGWTYDELAHRTGLARRTLIEIEQGRTIGSLKTWHAIAHALDVPVDHLF 72 >gi|167574981|ref|ZP_02367855.1| hypothetical protein BoklC_34450 [Burkholderia oklahomensis C6786] Length = 386 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + ++ R AK+TQ GFA++ + +E+GK +++D + A + Sbjct: 10 EVLGARLKSARSLAKMTQDVAAQALGFARTTVVAIESGKRAVSVDELRSFAELYAVSESE 69 Query: 80 LL 81 LL Sbjct: 70 LL 71 >gi|108799691|ref|YP_639888.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119868801|ref|YP_938753.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|108770110|gb|ABG08832.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119694890|gb|ABL91963.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] Length = 272 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R R+ +L+Q ++ + +S LETG+ST + ++ LA LD PL + Sbjct: 15 FGDVLRTWRQRRRLSQLDLAIEADVSARHLSFLETGRSTPSRAMVLRLAEVLDVPLRE 72 >gi|52421239|ref|YP_087151.1| hypothetical protein BFp0025 [Bacteroides fragilis YCH46] gi|254885261|ref|ZP_05257971.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|255016592|ref|ZP_05288718.1| hypothetical protein B2_22006 [Bacteroides sp. 2_1_7] gi|319644450|ref|ZP_07998883.1| hypothetical protein HMPREF9011_04486 [Bacteroides sp. 3_1_40A] gi|52218760|dbj|BAD51352.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|194022233|gb|ACF32649.1| BUN24p11.7 [Bacteroides uniformis] gi|254838054|gb|EET18363.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|317384091|gb|EFV65068.1| hypothetical protein HMPREF9011_04486 [Bacteroides sp. 3_1_40A] Length = 104 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R+ LTQ+E+ N G ++ IS +E GK + + + + Sbjct: 35 FLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGK-NLTFSTIARVFKAMGIS 90 >gi|47564475|ref|ZP_00235520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558627|gb|EAL16950.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 67 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 M FV + R + +TQ+++ G + IS LE GK ++ +A L Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAYDIAKALH 55 >gi|94310168|ref|YP_583378.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354020|gb|ABF08109.1| transcriptional regulator, XRE family with shikimate kinase activity [Cupriavidus metallidurans CH34] Length = 316 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R +++K++ ++ +++ LETG ++ + +A+ LD PL +L Sbjct: 30 LGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANALDVPLPVVL 89 >gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] Length = 191 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ R G +++ I ++E G+S+ + L+ L + L+ Sbjct: 13 GERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALGLSMSTLI 71 >gi|182626310|ref|ZP_02954066.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908408|gb|EDT70950.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 65 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R A ++Q E+ + G + I+ +E K ++D I +A L T L L Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVVRQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59 >gi|157145722|ref|YP_001453041.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895] gi|157082927|gb|ABV12605.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895] Length = 178 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 29/62 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLKALRQQREWSLSRLAEATGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSTFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|154483937|ref|ZP_02026385.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] gi|149734979|gb|EDM50865.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] Length = 98 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK TQ+ + S +E G + I+ + +A LDT L L+ Sbjct: 9 GKRIKELRKAKGYTQESFAEELNISHRTYSGIELGNHSTTIETFVEMASILDTTLDYLI 67 >gi|91787363|ref|YP_548315.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91696588|gb|ABE43417.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 201 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MPR R +A +R+ R RK +LT K++ R+G A S +S++E G+ + Sbjct: 1 MPRSARTPAAAPEA---DRVQLGLRLREHRKARRLTLKDLSGRSGVALSTLSKMELGQMS 57 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + + +A L + +LL Sbjct: 58 VSYEKLAAVARALSLDVGQLL 78 >gi|325298893|ref|YP_004258810.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318446|gb|ADY36337.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 112 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RN R + LTQ+E+ R G ++ IS +E G S I+I M + L Sbjct: 45 GEAIRNARLKQNLTQEELGERIGVQKAQISRMERGYS-ISIPTMSRVFKALGI 96 >gi|313889746|ref|ZP_07823388.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121791|gb|EFR44888.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 121 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLD 74 ++ F +N + +R E K+ Q E+ + G + S ISE E GK T D ++ +A Sbjct: 2 PTQKSYFPSNLKYLRLEKKMEQLELAQKIGRKSASTISEWENGKYTPKQDILLKVADLFQ 61 Query: 75 TPLWKLL 81 + L+ Sbjct: 62 VDINTLV 68 >gi|303229250|ref|ZP_07316046.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302516105|gb|EFL58051.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 148 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + R +Q E+ G + + +S ETG ++D + LA + L + Sbjct: 1 MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|294778793|ref|ZP_06744212.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|294447449|gb|EFG16030.1| DNA-binding protein [Bacteroides vulgatus PC510] Length = 92 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + KE +T E+ ++ G AQ+ +S++ G I + +A L P+ +L + Sbjct: 4 RVKEVCKEKGVTLAEVASKIGVAQASLSKMLGG--NPTIGTLEKIADALGVPVTELFE 59 >gi|288553474|ref|YP_003425409.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288544634|gb|ADC48517.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] Length = 188 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 25/63 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +R E + + T ++ + ++E G+S + + +A L+ Sbjct: 8 KLIGVRLKALRVEQGYSLDHLAQITTVSKPMLGQIERGESNPTVGTLWKIAKGLNVSFTS 67 Query: 80 LLK 82 L+ Sbjct: 68 FLE 70 >gi|284990260|ref|YP_003408814.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063505|gb|ADB74443.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 195 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 30/69 (43%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 E + +R+ +LT ++ +G + ++S+LE +++ ++ ++ + L Sbjct: 4 VSEVEVPRIGGRLKAVRQARRLTLTDVAEASGLTKGFLSKLERDQASASVAALVRVCAAL 63 Query: 74 DTPLWKLLK 82 L + Sbjct: 64 GISPGSLFE 72 >gi|258611915|ref|ZP_05243102.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290892307|ref|ZP_06555302.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293596363|ref|ZP_05230968.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293597004|ref|ZP_05266446.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300764870|ref|ZP_07074859.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] gi|258607134|gb|EEW19742.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290558133|gb|EFD91652.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293584645|gb|EFF96677.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595206|gb|EFG02967.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514357|gb|EFK41415.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] Length = 117 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + + + IS E G N D + LA + L Sbjct: 11 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 70 Query: 80 LL 81 Sbjct: 71 FF 72 >gi|229092725|ref|ZP_04223870.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-42] gi|228690651|gb|EEL44429.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-42] Length = 114 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + +RK L Q+++ + ++S I+ E G S ++ + LA + L Sbjct: 2 KTFSETLKALRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDV 61 Query: 80 L 80 L Sbjct: 62 L 62 >gi|227511236|ref|ZP_03941285.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227085531|gb|EEI20843.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577] Length = 171 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + +Q+++ + + IS E G S ++ N+ +L+ D PL +K Sbjct: 7 QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVK 64 >gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ +TQKE+ + G + + E+G+ T D + +A + L Sbjct: 1 MLGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQRTPPPDILQKIADFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|328945491|gb|EGG39642.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 108 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102 >gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 220 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F RK+ +TQ+E+ +R G ++ I++ E G +++ +I L+ + L Sbjct: 1 MFHLKMIEYRKKNMMTQEELADRLGVSRQTITKWEKGTILPSLEYLIDLSRLFGVTIDHL 60 Query: 81 LK 82 +K Sbjct: 61 VK 62 >gi|254819823|ref|ZP_05224824.1| hypothetical protein MintA_07859 [Mycobacterium intracellulare ATCC 13950] Length = 190 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +T +E+ R G S +S LE+GK + +D++ LA L +LL+ Sbjct: 22 QRGMTLQEVGERAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQ 72 >gi|241896173|ref|ZP_04783469.1| MutR family positive transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870592|gb|EER74343.1| MutR family positive transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 300 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ N +RK KL+ + + G + S++S +E G+S I++D + IL + LD Sbjct: 8 RIKVGNALHKMRKNKKLSLSDFSDI-GLSPSFLSRVENGESGISLDRLYILLNKLDVSFT 66 Query: 79 K 79 + Sbjct: 67 E 67 >gi|238755351|ref|ZP_04616693.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] gi|238706386|gb|EEP98761.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] Length = 123 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFA----QSWISELETGKSTINIDNMIILAHTLDTP 76 + + R+ A L+Q+++ G S +S E G++T + D ++ +A LD P Sbjct: 1 MVPKRLKAAREAAGLSQEKLAELVGIEGVSLNSRLSNYEVGRNTPSFDFIVRIAKALDYP 60 >gi|163782866|ref|ZP_02177862.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] gi|159881987|gb|EDP75495.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] Length = 71 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R+E L+Q+E R G + E+E G+ ++ ++ D W L Sbjct: 1 MVGERVRKLREEKGLSQEEFARRIGIPVDRLREIEEGRLEPCDATLVYISKLFDVSFWWL 60 >gi|157151313|ref|YP_001449689.1| putative transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157076107|gb|ABV10790.1| putative transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 116 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + LD + Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALDMTPEEFF 70 >gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 190 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L D +R I R +R E + ++ +G +++ +S LE + + L Sbjct: 5 LPDDNAIDRRI-AQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAVSPTASVLGKLC 63 Query: 71 HTLDTPLWKLL 81 P+ +L+ Sbjct: 64 VAYGLPMSRLM 74 >gi|89894469|ref|YP_517956.1| hypothetical protein DSY1723 [Desulfitobacterium hafniense Y51] gi|89333917|dbj|BAE83512.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 85 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLWK 79 N RK +TQ ++ + G ++S++ E+E +T++++ + +A+ L K Sbjct: 20 LGLNIAYYRKREGMTQDQLAEKAGMSRSYLGEIEAPNMITTMSLEVLFNIANVLRIKPSK 79 Query: 80 LLK 82 LL+ Sbjct: 80 LLE 82 >gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N +++RK +LTQ E G +++ +S E G S I+ + + + + + Sbjct: 1 MIGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|315657125|ref|ZP_07910009.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492228|gb|EFU81835.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 326 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 23/56 (41%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQ E+ +G QS IS E K I+ LA + P L+ Sbjct: 17 LRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVPAHTLM 72 >gi|296876191|ref|ZP_06900245.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|312867365|ref|ZP_07727574.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|319946640|ref|ZP_08020874.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322389882|ref|ZP_08063423.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|296432902|gb|EFH18695.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|311097066|gb|EFQ55301.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|319746688|gb|EFV98947.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321143463|gb|EFX38900.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 69 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI N + +R L Q E+ G ++ IS LE G+ T ++ I +A P+ Sbjct: 1 MILKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTPSVIIAITIAQIFKEPVEN 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|262374375|ref|ZP_06067650.1| conserved hypothetical protein [Acinetobacter junii SH205] gi|262310632|gb|EEY91721.1| conserved hypothetical protein [Acinetobacter junii SH205] Length = 101 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLW 78 + R R +++Q E+ R G + +S LE G ++++N++ +A L L Sbjct: 14 LLGERLRKQRLFLEMSQAEVAARAGVGVNTVSNLEAG-RNVSVENLVRIAMVLGRLNELQ 72 Query: 79 KLLKP 83 +L KP Sbjct: 73 ELFKP 77 >gi|228952477|ref|ZP_04114558.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807214|gb|EEM53752.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IR + ++QKE+ +S IS ET + + + +N +A L + LL Sbjct: 4 LGERIKSIRTKKNISQKELAEALNVNRSAISLYETNRKSPSRENTYKIATVLGVSIDYLL 63 >gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] Length = 116 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK +K+TQ+++ N G ++ IS E GK + +++ +A L Sbjct: 1 MIGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 103 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N RKE L+ + ++ +Q IS E G + I I++++ +A L+ P+ Sbjct: 6 IIGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNCPIEWF 65 Query: 81 LK 82 + Sbjct: 66 FQ 67 >gi|169334290|ref|ZP_02861483.1| hypothetical protein ANASTE_00688 [Anaerofustis stercorihominis DSM 17244] gi|169259007|gb|EDS72973.1| hypothetical protein ANASTE_00688 [Anaerofustis stercorihominis DSM 17244] Length = 123 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF +N + RK QKEI S S E GK NI + +A L+ L Sbjct: 3 IFSDNLKKFRKLKNFKQKEIAEMLEIDTSTYSNYENGKREPNILTIKKIAKILNVSGDDL 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|126732539|ref|ZP_01748337.1| transcriptional regulator, putative [Sagittula stellata E-37] gi|126706985|gb|EBA06053.1| transcriptional regulator, putative [Sagittula stellata E-37] Length = 433 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 25/65 (38%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R R + Q E+ G + S+++ +E + I ++ +A L Sbjct: 1 MPRDTLTGSRIREKRIAQGMRQSELAKIAGISASYLNLIEHNRRRIGGKLLLEIADALSV 60 Query: 76 PLWKL 80 L Sbjct: 61 EPTHL 65 >gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E LT ++ +G +++ IS +E +++ + + L L Sbjct: 14 GIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAALGLSL 68 >gi|24461679|gb|AAN62248.1|AF440524_35 putative transcriptional regulator [Pseudomonas aeruginosa] Length = 181 Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN R ++ + + G + S +S++ETGK+ + + + +A L P K L Sbjct: 7 IRNQRNLKGISLRSLARELGISASQLSKIETGKAKLTVSVALKIADILQVPASKFL 62 >gi|325002595|ref|ZP_08123707.1| helix-turn-helix domain-containing protein [Pseudonocardia sp. P1] Length = 225 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW------K 79 R +R+ A+L+Q+E+ RTG A+S I +E+ ++D + + L + Sbjct: 21 VRAVRRRAELSQRELAERTGLARSTIGRIESRSLAPSLDTLSAILDVAGLRLVAVDQENR 80 Query: 80 LLKP 83 L++P Sbjct: 81 LVRP 84 >gi|313633852|gb|EFS00575.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067] Length = 167 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75 M + R +RK +TQKE+ G+ A I++ ETG T ID + +A L+ Sbjct: 1 MSVGSRIRRVRKFRDMTQKELGIALGYDEKSADVRITQYETGTRTPKIDVLNAMAEVLNV 60 Query: 76 PLWKLLKP 83 + L +P Sbjct: 61 NVLSLKEP 68 >gi|311069952|ref|YP_003974875.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|310870469|gb|ADP33944.1| transcriptional regulator [Bacillus atrophaeus 1942] Length = 151 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + R RK + ++ G ++S++S++E G +I + ++ TL+ L + Sbjct: 1 MIGRIIRLYRKRKGYSINQLAVEAGVSKSYLSKIERGVHTNPSIQFLKKVSETLEVELTE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 105 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R RK LTQ + + G QS IS++E GK + + + + +A LD Sbjct: 7 RKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLDLEPV 61 >gi|257080321|ref|ZP_05574682.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256988351|gb|EEU75653.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] Length = 379 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER+IF + R LT KE+ + ++ IS E+GK+ D+++ L L P Sbjct: 3 ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62 >gi|240851129|ref|YP_002972531.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268252|gb|ACS51840.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R +L+QK + + G + I + E G + +++ ++ +A L+ P+ Sbjct: 12 LIGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPM 68 >gi|229824149|ref|ZP_04450218.1| hypothetical protein GCWU000282_01453 [Catonella morbi ATCC 51271] gi|229786503|gb|EEP22617.1| hypothetical protein GCWU000282_01453 [Catonella morbi ATCC 51271] Length = 70 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 36/66 (54%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L++ +N R+IR++ +++ + R G ++ ++++E+G+ +N + + A L Sbjct: 2 LKDDHSVGSNIRDIREQLGISKVGLAERIGIHRNAVAKIESGERKLNQKGLKVFARALGV 61 Query: 76 PLWKLL 81 + +L Sbjct: 62 TVQDIL 67 >gi|229547318|ref|ZP_04436043.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256963086|ref|ZP_05567257.1| transcriptional regulator [Enterococcus faecalis HIP11704] gi|257420304|ref|ZP_05597294.1| zinc-binding transcriptional regulator [Enterococcus faecalis X98] gi|307272606|ref|ZP_07553857.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307274524|ref|ZP_07555705.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|312899748|ref|ZP_07759068.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312953750|ref|ZP_07772582.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229307557|gb|EEN73544.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256953582|gb|EEU70214.1| transcriptional regulator [Enterococcus faecalis HIP11704] gi|257162128|gb|EEU92088.1| zinc-binding transcriptional regulator [Enterococcus faecalis X98] gi|306508796|gb|EFM77885.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306510708|gb|EFM79727.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|310628336|gb|EFQ11619.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|311293100|gb|EFQ71656.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315152739|gb|EFT96755.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315154567|gb|EFT98583.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315158937|gb|EFU02954.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315167131|gb|EFU11148.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315171237|gb|EFU15254.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323479183|gb|ADX78622.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 379 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER+IF + R LT KE+ + ++ IS E+GK+ D+++ L L P Sbjct: 3 ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62 >gi|191639822|ref|YP_001988988.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|190714124|emb|CAQ68130.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|327383933|gb|AEA55409.1| Transcriptional regulator, XRE family [Lactobacillus casei LC2W] gi|327387114|gb|AEA58588.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 212 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + R+ A L+Q ++ + + IS E G +D L+ L + L Sbjct: 4 NRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYL 60 >gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+E LT ++ +G +++ IS +E +++ + + L L Sbjct: 10 GIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAALGLSL 64 >gi|158336692|ref|YP_001517866.1| XRE family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306933|gb|ABW28550.1| transcriptional regulator, XRE family [Acaryochloris marina MBIC11017] Length = 278 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ RK KL+Q ++ +Q +S LETG+S + + L+ ++ PL + Sbjct: 14 RHWRKFRKLSQLDLALAANVSQRHVSWLETGRSHPSRAMVERLSEAMNIPLRE 66 >gi|22536732|ref|NP_687583.1| prophage LambdaSa1, Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76799546|ref|ZP_00781676.1| transcription regulator [Streptococcus agalactiae 18RS21] gi|22533575|gb|AAM99455.1|AE014217_10 prophage LambdaSa1, transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76585097|gb|EAO61725.1| transcription regulator [Streptococcus agalactiae 18RS21] Length = 63 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 N + +R++ TQ E+ ++ ++S + LETG S + ++ LA LD + L Sbjct: 5 NLKQLREKKGFTQNELADKANVSRSLVVGLETGSYSETSTASLKKLAKALDVKIKDLF 62 >gi|331696794|ref|YP_004333033.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951483|gb|AEA25180.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 152 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ A L+ +E+ + T + +++S++E G ++ + +A L +LL Sbjct: 29 IRAQRQLANLSLREMASLTSVSNAYLSQVERGLHQPSLKVLRSIADALQLSTEQLL 84 >gi|325697167|gb|EGD39054.1| transcriptional regulator [Streptococcus sanguinis SK160] Length = 108 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNENIENVFR 102 >gi|300786855|ref|YP_003767146.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796369|gb|ADJ46744.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 264 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R R +++Q ++ + +S +ETG+S + D ++ L LD Sbjct: 2 VQPRQRPVGQLLREWRDRRRISQLDLAISADISTRHLSFVETGRSKPSRDMVLRLGEHLD 61 Query: 75 TPLWK 79 PL + Sbjct: 62 VPLRE 66 >gi|296128685|ref|YP_003635935.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296020500|gb|ADG73736.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 446 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+ R+ + L+Q ++ S++S LE G + LA L Sbjct: 19 VSERIRDARERSGLSQADLARAAMMHPSYVSHLERGVRGPGDGALERLARALGV 72 >gi|260597511|ref|YP_003210082.1| 26 kDa repressor protein [Cronobacter turicensis z3032] gi|260216688|emb|CBA30048.1| 26 kDa repressor protein [Cronobacter turicensis z3032] Length = 233 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPL 77 RM N R +R + E+ + + IS LETGK + + LAH L + Sbjct: 2 RMNIGNRVRQLRLAKNMKIAELADAVEVDAANISRLETGKQKQFTEQTLNRLAHALGVTV 61 Query: 78 WKLLK 82 L Sbjct: 62 ADLFT 66 >gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ +TQKE+ G + + E+G+ T D + +A + + L Sbjct: 1 MLGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQRTPPPDILQKIADFFNVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|227534195|ref|ZP_03964244.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188165|gb|EEI68232.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 73 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R+ K++Q + + G A+ I+ +E K ++D + LA TL T L L Sbjct: 8 NRVRDYRRAQKMSQLALAEKIGVARQTINLIENSKYNPSLDLCLKLAWTLKTDLNTLF 65 >gi|227555210|ref|ZP_03985257.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|256958526|ref|ZP_05562697.1| transcriptional regulator [Enterococcus faecalis DS5] gi|257078158|ref|ZP_05572519.1| transcriptional regulator [Enterococcus faecalis JH1] gi|257088416|ref|ZP_05582777.1| transcriptional regulator [Enterococcus faecalis D6] gi|257418088|ref|ZP_05595082.1| transcriptional regulator [Enterococcus faecalis T11] gi|294780734|ref|ZP_06746094.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270000|ref|ZP_07551325.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307283890|ref|ZP_07564063.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307288073|ref|ZP_07568089.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|307290765|ref|ZP_07570663.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|227175668|gb|EEI56640.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|256949022|gb|EEU65654.1| transcriptional regulator [Enterococcus faecalis DS5] gi|256986188|gb|EEU73490.1| transcriptional regulator [Enterococcus faecalis JH1] gi|256996446|gb|EEU83748.1| transcriptional regulator [Enterococcus faecalis D6] gi|257159916|gb|EEU89876.1| transcriptional regulator [Enterococcus faecalis T11] gi|294452174|gb|EFG20616.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498185|gb|EFM67704.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306500951|gb|EFM70266.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306503540|gb|EFM72787.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306513665|gb|EFM82272.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|315026105|gb|EFT38037.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315028652|gb|EFT40584.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315033008|gb|EFT44940.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035227|gb|EFT47159.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315147020|gb|EFT91036.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315163543|gb|EFU07560.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315574630|gb|EFU86821.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315580864|gb|EFU93055.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|327536374|gb|AEA95208.1| cro/CI family zinc-binding transcriptional regulator [Enterococcus faecalis OG1RF] gi|329577544|gb|EGG58980.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 379 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER+IF + R LT KE+ + ++ IS E+GK+ D+++ L L P Sbjct: 3 ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62 >gi|187778017|ref|ZP_02994490.1| hypothetical protein CLOSPO_01609 [Clostridium sporogenes ATCC 15579] gi|187774945|gb|EDU38747.1| hypothetical protein CLOSPO_01609 [Clostridium sporogenes ATCC 15579] Length = 65 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE + Q+E+ + ++ IS LE G+ +I +A + + + Sbjct: 3 NKLEEIRKERGIKQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60 >gi|111023714|ref|YP_706686.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110823244|gb|ABG98528.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 128 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R R T +E+ N + ++SE+E G+ + + + + L+ PL Sbjct: 6 REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDALEVPLS 65 Query: 79 KLL 81 +L Sbjct: 66 DVL 68 >gi|313677582|ref|YP_004055578.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944280|gb|ADR23470.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 87 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + + +R E LTQ+++ + + +S +E S +I + L L Sbjct: 15 KEYFADVLKEVRLEKGLTQQKLCDLANMERVVLSRIERKISFPSIPTLFRLCVVLGIKPS 74 Query: 79 KLLK 82 +++K Sbjct: 75 EIVK 78 >gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 108 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ TQ+E+ + ++ IS+ E G S ++ ++ L+ L Sbjct: 1 MISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISEPDLIMLMQLSQLFSVSTDYL 60 Query: 81 LK 82 + Sbjct: 61 IT 62 >gi|220919779|ref|YP_002495082.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] gi|219952199|gb|ACL62590.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 204 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R+ KLT +++ +R+G + S +S++E + + + + +A + Sbjct: 20 QSLGQRLRELRRSRKLTLQQVSDRSGISLSSLSKIERDELSPTVTTLERIAAGYEI 75 >gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 277 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A+++ +++ + G + ++S++E G + + + +A L L Sbjct: 9 VGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67 >gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 132 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLW 78 M F R +R+ LTQ ++ G + IS E G+S + LA LDT Sbjct: 1 MSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHD 60 Query: 79 KLLK 82 L+ Sbjct: 61 YLVT 64 >gi|308175112|ref|YP_003921817.1| transcriptional repressor rghRB [Bacillus amyloliquefaciens DSM 7] gi|307607976|emb|CBI44347.1| Transcriptional repressor rghRB [Bacillus amyloliquefaciens DSM 7] gi|328555081|gb|AEB25573.1| Transcriptional repressor rghRB [Bacillus amyloliquefaciens TA208] gi|328913436|gb|AEB65032.1| Transcriptional repressor rghRB [Bacillus amyloliquefaciens LL3] Length = 143 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R+ KLT ++ +G + + IS +E G + LA TL P +L Sbjct: 4 FGKQLRELRRARKLTVNQLAVYSGVSSATISRIENGHRGIPKPATIKKLADTLKIPYEEL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|297560612|ref|YP_003679586.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845060|gb|ADH67080.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 272 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 DA ++ F R +R +A LTQ+E+ +QS +S+LE GK D ++ L Sbjct: 2 QEEDADKAAQLRFGKLLRKLRGQAGLTQQELAALAVVSQSTVSDLERGKKGTRRDPVVRL 61 Query: 70 AHTL 73 L Sbjct: 62 DKAL 65 >gi|294787896|ref|ZP_06753140.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC 29453] gi|294484189|gb|EFG31872.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC 29453] Length = 72 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ +Q+E+ R A+ I+ +E + + I LAH LDT L L Sbjct: 3 ANQVRQYRQIKGWSQQELAQRIEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61 >gi|238892802|ref|YP_002917536.1| putative regulatory protein [Klebsiella pneumoniae NTUH-K2044] gi|238545118|dbj|BAH61469.1| putative regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 75 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R+ R +TQ+E+ + G QS+I+++E+G+ +++ + L L+ Sbjct: 10 QLVIKALRDARIACGITQQEVASAFGRPQSFIAKVESGERRLDVVEFVRLCRLLNIEPAS 69 Query: 80 LL 81 +L Sbjct: 70 IL 71 >gi|237795100|ref|YP_002862652.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229262129|gb|ACQ53162.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 73 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82 R +R + TQ+ + R G Q +IS LE G+ + I + L+H L KLL+ Sbjct: 1 MRKLRTKLGYTQETLGERIGVEQPYISRLENGEIEFMTIGKLKKLSHALQVHPVKLLE 58 >gi|224824341|ref|ZP_03697449.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603760|gb|EEG09935.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 194 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK + +++ +G ++S IS +E +++ + LA L L L Sbjct: 7 LAKRIHSLRKSRAYSLEKLAELSGVSRSMISLIERAETSATAAVLNKLADALGVSLASLF 66 >gi|209966969|ref|YP_002299884.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] gi|209960435|gb|ACJ01072.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] Length = 191 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R R P S+ R R +TQ+E+ R G + + E G + + + Sbjct: 7 RGRRGPRQSEEDAAVSAALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAV 66 Query: 64 DNMIILAHTLDTPLWKLLK 82 +I LA+ LDT LL+ Sbjct: 67 PTLIKLANALDTTPADLLE 85 >gi|169826776|ref|YP_001696934.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168991264|gb|ACA38804.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 183 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 31/59 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + IR++ L+ ++ TG +++ ++++E G++ + + +A + LL+P Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRISFSSLLQP 69 >gi|78189814|ref|YP_380152.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78172013|gb|ABB29109.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 100 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 22/47 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R E LTQ+E+ + G + +IS++E + + + + Sbjct: 42 IQQARLEKGLTQEELAEKCGTNKGYISKIENNIKEVRVSTLQKIVEL 88 >gi|29377715|ref|NP_816869.1| zinc-binding Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29345183|gb|AAO82939.1| zinc-binding transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 379 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER+IF + R LT KE+ + ++ IS E+GK+ D+++ L L P Sbjct: 3 ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62 >gi|327439445|dbj|BAK15810.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 133 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R + K +Q ++ G + +SE E GK I+ D + +A L+ + Sbjct: 11 GNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVLEAKVDDFF 69 >gi|326793847|ref|YP_004311667.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] gi|326544611|gb|ADZ89831.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] Length = 185 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + + + R + + E+ A+S +S++E G +I+ + L+ L+ P Sbjct: 8 AQRLISRSLQRERTKKGYSINELSKLAKVAKSTLSQIEAGSGNPSIETVWALSTALNVPF 67 Query: 78 WKLLKP 83 L+ P Sbjct: 68 SALMAP 73 >gi|325917947|ref|ZP_08180117.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535849|gb|EGD07675.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 113 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTL 73 R+IF N R+ R++A+LTQ+ + G A++ I+ E G + ++ LA L Sbjct: 6 ARLIFANRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADAL 65 Query: 74 DTPL 77 PL Sbjct: 66 GMPL 69 >gi|320014977|gb|ADV98548.1| putative DNA-binding phage-related protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 107 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R++ LTQ+E+ R G + IS +E G + N+ + A L Sbjct: 35 RQAMMTELKAARQQCNLTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 90 >gi|313637891|gb|EFS03212.1| transcriptional regulator, putative [Listeria seeligeri FSL S4-171] Length = 293 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R LTQK I A+S + ++E GK + D + ++ L+T L +L+ Sbjct: 5 GTTLKKVRMAQNLTQKNIIGE-DLARSTLEKIENGKRNPSYDKITLICEKLNTSLPELI 62 >gi|238922497|ref|YP_002936010.1| hypothetical protein EUBREC_0071 [Eubacterium rectale ATCC 33656] gi|238874169|gb|ACR73876.1| Hypothetical protein EUBREC_0071 [Eubacterium rectale ATCC 33656] Length = 96 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IRK+ L +E+ +TG + S + ++E G +++ N+ +L +T LL Sbjct: 2 IRDIRKDKGLLIEEVAAKTGISVSTLGQVEQGGRNLSMKNLYMLMEVYETDANSLL 57 >gi|238922230|ref|YP_002935744.1| hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] gi|238873902|gb|ACR73610.1| Hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] Length = 110 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR L Q + + S IS +E + +++ +I + + L Sbjct: 11 ESIGKKLKEIRLSKGLPQDAVASVAEVNTSHISNIENNRVKVSLPTLIYICNALGV 66 >gi|256423759|ref|YP_003124412.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038667|gb|ACU62211.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 111 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++R + +Q ++ +++ ++ I + E G++ +ID +A L L L+ Sbjct: 4 GKIIADLRDKLAWSQTDLADKSSVSRVMIGKYERGEAVPSIDAAKRIADALGVSLDYLV 62 >gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 224 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 34/59 (57%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK+ +Q+++ ++ G A+ +S+ E G++ ++ +I+L+ + +++K Sbjct: 5 EKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIPELNGLILLSELYGVTIDRIVK 63 >gi|239629817|ref|ZP_04672848.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066939|ref|YP_003788962.1| putative transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527429|gb|EEQ66430.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439346|gb|ADK19112.1| Predicted transcriptional regulator [Lactobacillus casei str. Zhang] Length = 67 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ R+ K++Q + + G A+ I+ +E GK ++ + LA TL T L L Sbjct: 2 NRVRDYRRAKKMSQLALAEKIGVARQTINLIENGKYNPSLALCLKLAWTLKTDLNSLF 59 >gi|239623531|ref|ZP_04666562.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521562|gb|EEQ61428.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 115 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+E L+Q + + G I +E + + + L L P + Sbjct: 6 KTLGTVIRKAREEQGLSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLITALRIPADR 65 Query: 80 LLKP 83 + P Sbjct: 66 IFYP 69 >gi|77411971|ref|ZP_00788301.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|77161997|gb|EAO72978.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] Length = 62 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R E K +Q + G ++ I+ +E K ++D I LA L T L L Sbjct: 2 NRVKDYRLETKKSQLALAKEIGVSRQTINMIENNKYNPSLDLCIKLAKALGTDLNALF 59 >gi|319902619|ref|YP_004162347.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108] gi|319417650|gb|ADV44761.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108] Length = 105 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PRR + E +++ + + R+ LTQ+++ G ++ IS++E+GKS + Sbjct: 23 PRRNKYETDINN------FLIGEAIKQARESKNLTQEQLGELMGVQKAQISKIESGKS-V 75 Query: 62 NIDNMIILAHTLDT 75 ++ + Sbjct: 76 TFSTIVRAFKAMGV 89 >gi|300854943|ref|YP_003779927.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435058|gb|ADK14825.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 64 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK+ L Q+++ N + I+ +E K ++ + LA L+T + +L Sbjct: 3 NNIKVLRKQLGLRQEDVANALNVTRQTINAIENSKYNPTLELAMRLAKLLNTTVDELF 60 >gi|283833052|ref|ZP_06352793.1| DNA-binding protein [Citrobacter youngae ATCC 29220] gi|291070671|gb|EFE08780.1| DNA-binding protein [Citrobacter youngae ATCC 29220] Length = 178 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|228906187|ref|ZP_04070075.1| hypothetical protein bthur0013_3710 [Bacillus thuringiensis IBL 200] gi|228853444|gb|EEM98213.1| hypothetical protein bthur0013_3710 [Bacillus thuringiensis IBL 200] Length = 65 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +F+ + +R E T KE+ G + + +E GK D ++ +A L Sbjct: 1 MFIKTLKQLRVEQGYTCKEVAEAVGITEVYYWYIENGKRRPYYDLIVKIAEFFKVKL 57 >gi|222825165|dbj|BAH22322.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 120 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D R R L+Q+++ + + I ETG+ + +D + LA Sbjct: 2 DTQHPIDKQIGERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEA 61 Query: 73 LDTPL 77 L + Sbjct: 62 LSVDM 66 >gi|152986086|ref|YP_001345707.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961244|gb|ABR83269.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 179 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + +TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60 >gi|30023288|ref|NP_834919.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29898849|gb|AAP12120.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] Length = 63 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RK L+Q E+ + A+ I+ +E K ++ I LA L T L L Sbjct: 2 NNVKQYRKSEDLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14] Length = 229 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R E K Q EI + G ++ S+ E+GKS N N+ +A LD P Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLSAIAKILDVP 57 >gi|291438420|ref|ZP_06577810.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291341315|gb|EFE68271.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 449 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R E LTQK++ + +++S LE+G+ + D + LA L + Sbjct: 10 ETIGRRVQKLRVERGLTQKQLAEPV-YTPAYVSTLESGRVRPSDDALRHLADRLGVAFDE 68 Query: 80 L 80 L Sbjct: 69 L 69 >gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 213 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 34/58 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +++RK ++Q+++ + G ++ +S+ E+G+S +I+ +I+++ LLK Sbjct: 6 RIQSLRKTKGISQEQLADELGVSRQAVSKWESGQSMPDIEKIILMSEYFKITTDYLLK 63 >gi|302520357|ref|ZP_07272699.1| regulatory protein [Streptomyces sp. SPB78] gi|302429252|gb|EFL01068.1| regulatory protein [Streptomyces sp. SPB78] Length = 284 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 R+ N R +R++ +T + + G+ +S IS +E GK+ ++ ++ Sbjct: 10 ARIALGNRLRALRRQQGITARALAADCGWHESKISRVENGKALPSVQDLTKWTEA 64 >gi|271967718|ref|YP_003341914.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510893|gb|ACZ89171.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++F R +R+ A+L+Q + +R G Q+ +S LE T + + L TP Sbjct: 13 RVLFGTEMRRLREAAELSQVAVASRLGCTQTQVSRLEKATRTPSRSDAERLDRLFKTP 70 >gi|258515643|ref|YP_003191865.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779348|gb|ACV63242.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 73 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ N R IRK +T + + G + S++E G+ ++ + + +A L+ + ++ Sbjct: 6 VYGNRIRKIRKAKGITSCYVAKKLGMSPGGYSDIERGRRKLSAERVEKIAKILEIDIGEI 65 Query: 81 L 81 Sbjct: 66 F 66 >gi|227549074|ref|ZP_03979123.1| transcription regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078856|gb|EEI16819.1| transcription regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 123 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 3 RRKRDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +R + P +A+ R + R R + ++ + + + + +ISELE G+ Sbjct: 17 KRPLERPVQREAVREPLLREALGMSLRAFRADKNVSLRTLAAKARVSSGYISELERGRKE 76 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + + + LDT + ++L Sbjct: 77 VSSELLASICEALDTTVAEVL 97 >gi|223983799|ref|ZP_03633967.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] gi|223964238|gb|EEF68582.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] Length = 83 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N +RK + Q+E+ ++ I LE G+ +I +A D + Sbjct: 14 RRFMKNRLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYFDVSIE 73 Query: 79 KLL 81 ++ Sbjct: 74 EVF 76 >gi|170741746|ref|YP_001770401.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196020|gb|ACA17967.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 207 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 L+ K I RTG + ++S++E G S+ ++ + LA L+ L L Sbjct: 38 GLSLKAIAARTGLSIGFLSQVERGLSSPSLRVLTQLADLLEVGLASLF 85 >gi|160883371|ref|ZP_02064374.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483] gi|260172676|ref|ZP_05759088.1| hypothetical protein BacD2_12486 [Bacteroides sp. D2] gi|156111091|gb|EDO12836.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483] Length = 116 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R+ LTQ+++ G ++ IS++E+GKS I+ ++ + Sbjct: 46 FLIGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGVKTAS 104 Query: 80 L 80 L Sbjct: 105 L 105 >gi|71908183|ref|YP_285770.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847804|gb|AAZ47300.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 120 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K+D L+ N RK+ TQ+ + R G +S +E G Sbjct: 2 MAVKKKDSAGLAKH-------LGGNLCERRKQLGWTQEIVAERVGVDVETVSRIERGAHL 54 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + LA L LL Sbjct: 55 PSLPTLDRLAVALRCSAGDLL 75 >gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 208 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P E + R +RK LT E+ ++ +IS+LE + Sbjct: 9 PASAPPETGTDNQAPGGPQFLGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLAYP 68 Query: 62 NIDNMIILAHTLDT 75 +I + +A +L Sbjct: 69 SIPALFNIARSLGV 82 >gi|119384106|ref|YP_915162.1| hypothetical protein Pden_1365 [Paracoccus denitrificans PD1222] gi|119373873|gb|ABL69466.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 477 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E++I R +R+ LTQ ++ G + S+++ +E+ + + ++ LA D + Sbjct: 5 EKLIIGQRLRVLRQSLGLTQAQMAAELGVSASYVTLIESDQRPASARFLMRLAEIYDLNI 64 Query: 78 WKL 80 +L Sbjct: 65 AEL 67 >gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 189 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + + +G +++ I ++E G+S+ ++ LA + + LL Sbjct: 13 GARIRAERESRGWSLTNLAENSGVSRAMIHKIERGESSPTATSLAKLAGAFNLSMSALL 71 >gi|315226645|ref|ZP_07868433.1| transcriptional regulator [Parascardovia denticolens DSM 10105] gi|315120777|gb|EFT83909.1| transcriptional regulator [Parascardovia denticolens DSM 10105] Length = 189 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H D+ + R + R++R + T +EI R G + ++SE+E G+ + + + + Sbjct: 88 HQDDSEISLRKVQGGVLRSLRTKDHKTLREISERAGVSLGYLSEVERGQKEASSELLTSI 147 Query: 70 AHTLDTPLWKLL 81 L L +L Sbjct: 148 TEALGVRLSDML 159 >gi|293396430|ref|ZP_06640708.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421219|gb|EFE94470.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IR++ L+Q+ + +G S IS +E K + I + L L Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSL 63 >gi|238921804|ref|YP_002935318.1| hypothetical protein EUBELI_20037 [Eubacterium eligens ATCC 27750] gi|238873476|gb|ACR73184.1| Hypothetical protein EUBELI_20037 [Eubacterium eligens ATCC 27750] Length = 97 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + + Sbjct: 32 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 91 Query: 80 LL 81 + Sbjct: 92 VF 93 >gi|213019728|ref|ZP_03335533.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994769|gb|EEB55412.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 300 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G++ + +D + +A L + LL Sbjct: 161 GKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 219 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R E TQK++ + G I + E G I+I+ + + L + L+ Sbjct: 9 VGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 68 >gi|168210270|ref|ZP_02635895.1| conserved domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711625|gb|EDT23807.1| conserved domain protein [Clostridium perfringens B str. ATCC 3626] Length = 71 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + E++ N + R + LTQ+ + + G IS E + +++ ++ LA L Sbjct: 2 KVKDEKVNLSKNLKENRLKKNLTQRALAEKCGLDFHTISLNENKERNSSLEIILRLALGL 61 Query: 74 DTPLWKLL 81 + L +LL Sbjct: 62 NISLEELL 69 >gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 113 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+E L+Q+++ + ++ I LE G T ++ + +A+ L + LL Sbjct: 17 LGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGTPSLFTVRKVANALGETVSALL 76 >gi|255973582|ref|ZP_05424168.1| CylR2 [Enterococcus faecalis T2] gi|256959429|ref|ZP_05563600.1| CylR2 [Enterococcus faecalis DS5] gi|256960245|ref|ZP_05564416.1| CylR2 [Enterococcus faecalis Merz96] gi|257080295|ref|ZP_05574656.1| CylR2 [Enterococcus faecalis JH1] gi|257423074|ref|ZP_05600064.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|307277414|ref|ZP_07558507.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307285036|ref|ZP_07565186.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307292300|ref|ZP_07572161.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312904701|ref|ZP_07763852.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|55670390|pdb|1UTX|A Chain A, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|55670391|pdb|1UTX|B Chain B, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|146386808|pdb|2GZU|A Chain A, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|146386809|pdb|2GZU|B Chain B, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|322812210|pdb|2XI8|A Chain A, High Resolution Structure Of Native Cylr2 gi|322812211|pdb|2XI8|B Chain B, High Resolution Structure Of Native Cylr2 gi|18139790|gb|AAL60140.1|AF394225_2 CylR2 [Enterococcus faecalis] gi|18104290|gb|AAL59476.1| putative transcription regulator [Enterococcus faecalis] gi|255966454|gb|EET97076.1| CylR2 [Enterococcus faecalis T2] gi|256949925|gb|EEU66557.1| CylR2 [Enterococcus faecalis DS5] gi|256950741|gb|EEU67373.1| CylR2 [Enterococcus faecalis Merz96] gi|256988325|gb|EEU75627.1| CylR2 [Enterococcus faecalis JH1] gi|257164898|gb|EEU94858.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|306496655|gb|EFM66211.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502937|gb|EFM72197.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306505903|gb|EFM75080.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|310631956|gb|EFQ15239.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163478|gb|EFU07495.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|329569606|gb|EGG51374.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 66 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 35/62 (56%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +NN + IR++ K++Q E+ ++ I+ +E K ++ + +A+ L+TPL + Sbjct: 1 MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60 Query: 81 LK 82 + Sbjct: 61 FQ 62 >gi|300788126|ref|YP_003768417.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797640|gb|ADJ48015.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 153 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T ++I + ++SE+E G+ + + + + LD PL Sbjct: 7 REAIGDRLRHARTNQRRTLRDISRAARVSLGYLSEVERGQKEASSELLASICQALDLPLG 66 Query: 79 KLL 81 +LL Sbjct: 67 ELL 69 >gi|299144547|ref|ZP_07037626.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517635|gb|EFI41375.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 73 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK LTQ+E ++ IS +E GK ++D +A + + ++ Sbjct: 5 NKLDELRKINGLTQEEFAKELRVSRQTISAIENGKYNPSLDLAFEIALYFNKTIEEVFT 63 >gi|297161126|gb|ADI10838.1| hypothetical protein SBI_07718 [Streptomyces bingchenggensis BCW-1] Length = 295 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 ++ R+R + R +R+ + L+ E G ++ +S +ETG++ I + + LA Sbjct: 5 ANPTQRQRRL-GEELRKLREASGLSATEAGAHVGLGRAHMSHIETGRTAIPEEKLRALAD 63 Query: 72 TLD 74 Sbjct: 64 VYG 66 >gi|227522962|ref|ZP_03953011.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227089780|gb|EEI25092.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 67 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK+ KL+Q + + G A+ I+ +E K +++ I +A L T L L Sbjct: 2 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 59 >gi|222084616|ref|YP_002543145.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221722064|gb|ACM25220.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 265 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +Q ++ TG +Q IS +E+G+ST N++ LA LD PL + Sbjct: 5 LGPQLRAWRGTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLAEVLDVPLRE 62 >gi|126698959|ref|YP_001087856.1| putative phage repressor [Clostridium difficile 630] gi|254974905|ref|ZP_05271377.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314032|ref|ZP_05355615.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516712|ref|ZP_05384388.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|260682969|ref|YP_003214254.1| putative phage repressor [Clostridium difficile CD196] gi|260686567|ref|YP_003217700.1| putative phage repressor [Clostridium difficile R20291] gi|306519912|ref|ZP_07406259.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|115250396|emb|CAJ68218.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209132|emb|CBA62325.1| putative phage repressor [Clostridium difficile CD196] gi|260212583|emb|CBE03577.1| putative phage repressor [Clostridium difficile R20291] Length = 106 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +RKE LTQ+E+ + G +Q + ET + + LA + + L Sbjct: 1 MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|52078575|ref|YP_077366.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|319648604|ref|ZP_08002818.1| transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52001786|gb|AAU21728.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|317389371|gb|EFV70184.1| transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 69 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I+ R RK TQ+ G + S + E+E G + +A+TL+ + Sbjct: 2 EAEIWGRRIRAYRKLKGYTQEGFAKALGISVSVLGEVERGNRMPTESMLRDVANTLNITV 61 Query: 78 WKL 80 +L Sbjct: 62 EEL 64 >gi|89095877|ref|ZP_01168771.1| DNA-binding protein [Bacillus sp. NRRL B-14911] gi|89089623|gb|EAR68730.1| DNA-binding protein [Bacillus sp. NRRL B-14911] Length = 68 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N R E K+TQ+E+ + G ++ I +E + ++ I +A +D P+ Sbjct: 2 KMLDNKISVYRAEKKMTQQELADAVGVSRQTILSIEKNRYNPSLILAIKIAKAVDKPIMD 61 Query: 80 LL 81 + Sbjct: 62 VF 63 >gi|317508728|ref|ZP_07966381.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC BAA-974] gi|316252976|gb|EFV12393.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC BAA-974] Length = 137 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+++ +++ R G + ++S++E G + M +A L L Sbjct: 18 GEFIRTQRELAQVSLRQLAQRAGVSNPYLSQIERGLRNPSAQVMGQIAKALRLSAEAL 75 >gi|300783560|ref|YP_003763851.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793074|gb|ADJ43449.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 474 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 6/58 (10%), Positives = 25/58 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E+ R++R+ ++Q ++ + S+++++E + + ++ + Sbjct: 2 EKTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGV 59 >gi|302546464|ref|ZP_07298806.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302464082|gb|EFL27175.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 295 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ A++TQ+E+ + G + ++E G + D + LA L LL Sbjct: 5 LARRVAYRRRIARMTQQELADAAGVHVGTLRKIERGARGASDDVIEALAAALGVDPALLL 64 >gi|238917665|ref|YP_002931182.1| hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750] gi|238873025|gb|ACR72735.1| Hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750] Length = 185 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 3 RRKRDEPHLSDAILRER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 R R + I ER ++ N +R A TQ++I G ++ ++ E G++ Sbjct: 20 GRIRIYKDYNTYITTERTDIMLQENLIMLRSFAGKTQEDIAEVIGISRQAYAKWERGETI 79 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 +I+ LA + L+K Sbjct: 80 PDIEKCGRLAEFYGVTMDSLIK 101 >gi|228907416|ref|ZP_04071274.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228852277|gb|EEM97073.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 404 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|240146357|ref|ZP_04744958.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257201519|gb|EEU99803.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 113 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + + +Q+ + + G + +S +E GK+ +++ +I +A+ LDT L L+ Sbjct: 9 GMRIKERRTKKEWSQEMLASTVGNSNPHMSNIEWGKTKVSLATLIDIANALDTTLDALI 67 >gi|225574085|ref|ZP_03782696.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] gi|225038685|gb|EEG48931.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] Length = 153 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + RK+ L+Q+++ + G ++ IS+ ET ++ +I +A + L +L+ Sbjct: 3 LGNSLFHARKKRGLSQEDVAEKLGVSRQTISKWETNETVPDIYQSKRMAMLYNMSLDELI 62 >gi|111017888|ref|YP_700860.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110817418|gb|ABG92702.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 211 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R + + R + S +S +ETG I +D ++ +A L T L +L++ Sbjct: 31 QRIRGLRLARGWSLDVLAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVE 89 >gi|30265281|ref|NP_847658.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47530816|ref|YP_022165.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188093|ref|YP_031346.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118480295|ref|YP_897446.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870026|ref|ZP_02214683.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167636539|ref|ZP_02394835.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641808|ref|ZP_02400049.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689396|ref|ZP_02880588.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170708952|ref|ZP_02899384.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177654077|ref|ZP_02936087.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567768|ref|ZP_03020680.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196045702|ref|ZP_03112932.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867228|ref|YP_002752606.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227818018|ref|YP_002818027.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603683|ref|YP_002869472.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686321|ref|ZP_05150180.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724317|ref|ZP_05186101.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735184|ref|ZP_05192893.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744390|ref|ZP_05202070.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755692|ref|ZP_05207725.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759577|ref|ZP_05211602.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30259959|gb|AAP29144.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505964|gb|AAT34640.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182020|gb|AAT57396.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118419520|gb|ABK87939.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164714349|gb|EDR19869.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510220|gb|EDR85625.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167528071|gb|EDR90871.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126117|gb|EDS95012.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666623|gb|EDT17394.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080960|gb|EDT66039.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561184|gb|EDV15157.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196023533|gb|EDX62210.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788303|gb|ACO28520.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227006050|gb|ACP15793.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229268091|gb|ACQ49728.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 63 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RK L+Q E+ R A+ I+ +E K ++ I LA L T L L Sbjct: 2 NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|134298755|ref|YP_001112251.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051455|gb|ABO49426.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 N +R+ +Q+++ + QS IS +E G ++ + LA L+ + +LL Sbjct: 7 GENVIKLREAKNWSQQDLEEASKVPQSSISRIEKGLLRNPGVETVRKLATALNVSVAELL 66 Query: 82 K 82 + Sbjct: 67 E 67 >gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis CV56] Length = 107 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK L+Q+E+ + ++ IS+ ETGKS +I+L+ D L LLK Sbjct: 7 IKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTGQIILLSEIFDCSLDTLLK 63 >gi|325570645|ref|ZP_08146371.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325156491|gb|EGC68671.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 281 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R+IR + K+TQK + +QS +S +E + N+ M + L L + Sbjct: 6 ESFGQNIRSIRLKRKMTQKMLAEDI-CSQSVLSRIENNEELPNVWVMYQICQRLGVTLDQ 64 Query: 80 LL 81 ++ Sbjct: 65 VM 66 >gi|319948414|ref|ZP_08022553.1| putative transcription regulator [Dietzia cinnamea P4] gi|319437918|gb|EFV92899.1| putative transcription regulator [Dietzia cinnamea P4] Length = 104 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P A R R +R E+ T +++ + + ++SE+E G+ + + + Sbjct: 12 PDQPGATPLLRETLGTVLRGLRGESGRTLRDVADAARVSPGYLSEIERGRKEASSELLAS 71 Query: 69 LAHTLDTPLWKLL 81 ++ L+ L ++L Sbjct: 72 ISGALEVSLGEIL 84 >gi|315274405|ref|ZP_07869367.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] gi|313615952|gb|EFR89134.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] Length = 111 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + + + IS E G N D + LA + L Sbjct: 5 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|310659212|ref|YP_003936933.1| hypothetical protein CLOST_1908 [Clostridium sticklandii DSM 519] gi|308825990|emb|CBH22028.1| conserved protein of unknown function [Clostridium sticklandii] Length = 63 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E + Q ++ G + I +E G ++ I + L+ L L Sbjct: 1 MKIARIECDMNQADLAKLVGVTRQTIGLIEAGDYNPTLNLCIAICKALNKTLNDLF 56 >gi|316932209|ref|YP_004107191.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599923|gb|ADU42458.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 231 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R+ + IRK KLTQ+ + + G I ++E+G+ + + +A Sbjct: 2 ETMERDPAYIAEQVKFIRKMHKLTQENLADAAGLTTRTIEKIESGRHRPDEQTLRSIARA 61 Query: 73 LDTPLWKLLKP 83 + + KP Sbjct: 62 MQIDVRYFEKP 72 >gi|239930398|ref|ZP_04687351.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291438754|ref|ZP_06578144.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291341649|gb|EFE68605.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 275 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 L + R + R +R++ + ++ + +G+ +S++S LE+G+ + M Sbjct: 2 TEQLDAHVESGRAVLGRTLRFLREKEGKSLGQLADASGYDKSYLSRLESGQRLSKVTVME 61 Query: 68 IL-----AHTLDTPLWKLLK 82 L A L LWK+ + Sbjct: 62 DLDTYYGAGGLLVSLWKVAR 81 >gi|323340979|ref|ZP_08081228.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644] gi|323091641|gb|EFZ34264.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644] Length = 493 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK +TQ+E+ ++ G ++ +S LE +I + LA LD L Sbjct: 17 RKAKNMTQQELSDKVGINRALLSRLEQQDFMPSIPQLENLAEVLDFEPSDLF 68 >gi|254476225|ref|ZP_05089611.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214030468|gb|EEB71303.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 207 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK T + N+ G A+S +S++E G+ + + + LA L + +L Sbjct: 27 LGARVRELRKARDWTLEYAANQAGLARSTLSKIENGQMSPTYEALKKLAEGLQITIPQLF 86 Query: 82 K 82 Sbjct: 87 T 87 >gi|167761064|ref|ZP_02433191.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] gi|167661298|gb|EDS05428.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] Length = 71 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 21/58 (36%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q+ + + + I +E GK ++ I + L L L Sbjct: 4 KKMKMARLSLDMSQEMLAAKVDVTRQTIGMIEAGKFNPSLKLCIAICKVLHVTLDDLF 61 >gi|119960859|ref|YP_947357.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119947718|gb|ABM06629.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 113 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R++R+ T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 5 RHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICTALDVPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 HMLR 68 >gi|220929560|ref|YP_002506469.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999888|gb|ACL76489.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 206 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 13 DAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ R F + +R+ ++Q+++ G ++ I+ ET ++ +N+ LA Sbjct: 121 KSVEHSRKEGSFGIRLKRLRRIHNISQEDLGKVLGVGRTAIANWETNQTEPTGENIKKLA 180 Query: 71 HTLDTPLWKLL 81 LL Sbjct: 181 ELFRVTTDYLL 191 >gi|91783258|ref|YP_558464.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687212|gb|ABE30412.1| Putative transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 106 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M + R+ A L+Q ++ R G + ISE+E G+ + D + + A D Sbjct: 1 MSIAERLKEAREIAGLSQGQVAKRLGMHRPTISEIEAGRRKVAADELDLFAELYDVS 57 >gi|86356364|ref|YP_468256.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280466|gb|ABC89529.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 469 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|52140306|ref|YP_086523.1| transcriptional regulator, DNA-binding protein [Bacillus cereus E33L] gi|196039476|ref|ZP_03106781.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|301056723|ref|YP_003794934.1| DNA-binding transcriptional regulator [Bacillus anthracis CI] gi|51973775|gb|AAU15325.1| transcriptional regulator, DNA-binding protein [Bacillus cereus E33L] gi|196029636|gb|EDX68238.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|300378892|gb|ADK07796.1| transcriptional regulator, DNA-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324329202|gb|ADY24462.1| DNA-binding transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 63 Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + RK L+Q E+ R A+ I+ +E K ++ I LA L T L L Sbjct: 2 NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|322832298|ref|YP_004212325.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] gi|321167499|gb|ADW73198.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] Length = 185 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ ++Q++ +G S IS +E K + + + L L + Sbjct: 9 GRRLSEIRQQLGMSQRKAAELSGLTHSAISTIEQDKVSPAVSTLQKLLRVYGLSLSEFF 67 >gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 116 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R E +Q + + G + S++E G + +++ + +A LD + +LL Sbjct: 4 LGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIVELL 63 >gi|295102882|emb|CBL00427.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 233 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE +TQK+ G +Q+ +S E G +D ++ +A + LL Sbjct: 3 FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 >gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 67 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+ L+Q+E+ + G ++ I+ +E K + LA L T + L Sbjct: 9 IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDPTLALAFHLAKELQTTVDNLF 64 >gi|260654993|ref|ZP_05860481.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260630308|gb|EEX48502.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 187 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 25/50 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+E L+Q+++ +G Q I+ +E G+ ID +I L L L Sbjct: 129 RARRELGLSQRKLEEMSGVKQPVIARMELGEINPQIDTVIKLLVPLGKTL 178 >gi|257791280|ref|YP_003181886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475177|gb|ACV55497.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 139 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ +TQ+++ R G + I E G+ + + +A L L+ Sbjct: 4 GSRIRALRESRGMTQRQLAERAGCTDAAIRNYEAGRRALKGSALDAIAGALGVAPEALM 62 >gi|326204985|ref|ZP_08194836.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984851|gb|EGD45696.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 206 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 13 DAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ R F + +R+ ++Q+E+ G ++ I+ ET ++ +N+ LA Sbjct: 121 KSVEHSRKEGSFGIRLKRLRRIHNISQEELGKVLGVGRTAIANWETNQTEPTGENIKKLA 180 Query: 71 HTLDTPLWKLL 81 LL Sbjct: 181 ELFRVTTDYLL 191 >gi|239998665|ref|ZP_04718589.1| putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240013798|ref|ZP_04720711.1| putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240116013|ref|ZP_04730075.1| putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240117623|ref|ZP_04731685.1| putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240125430|ref|ZP_04738316.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|260440861|ref|ZP_05794677.1| putative phage associated protein [Neisseria gonorrhoeae DGI2] Length = 89 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R + TQ E+ G Q ++S +E K ++ + LA+ L ++ Sbjct: 18 GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 75 >gi|239817789|ref|YP_002946699.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804366|gb|ACS21433.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 173 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 25/50 (50%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 A+++ E+ +G + S +S +E G + +++ + LA L P + Sbjct: 2 AAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 51 >gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a] gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a] Length = 215 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 I +++R+ L+Q ++ G+A S + E G ++ D+ ++L L Sbjct: 6 EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 65 Query: 79 KLL 81 K++ Sbjct: 66 KIM 68 >gi|218960459|ref|YP_001740234.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] gi|167729116|emb|CAO80027.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] Length = 240 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR+ + Q ++ S IS++E+G++ +++ + L + L L Sbjct: 1 MIGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTNPSLETLSELVVNYNVNLHWL 60 Query: 81 LK 82 + Sbjct: 61 IT 62 >gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 EDL933] gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 str. EDL933] Length = 215 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 I +++R+ L+Q ++ G+A S + E G ++ D+ ++L L Sbjct: 6 EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 65 Query: 79 KLL 81 K++ Sbjct: 66 KIM 68 >gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai] gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str. 1044] Length = 212 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 I +++R+ L+Q ++ G+A S + E G ++ D+ ++L L Sbjct: 3 EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 62 Query: 79 KLL 81 K++ Sbjct: 63 KIM 65 >gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019] gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019] Length = 215 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78 I +++R+ L+Q ++ G+A S + E G ++ D+ ++L L Sbjct: 6 EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 65 Query: 79 KLL 81 K++ Sbjct: 66 KIM 68 >gi|330824553|ref|YP_004387856.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329309925|gb|AEB84340.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 101 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R+ R + Q+ + + G +S + ++E G+ T + ++ +A L L+ Sbjct: 25 FGAAVRDERTSQGIAQETLAHLAGIERSHVGKIERGEHTPTLPLILKIARALKCSSAHLM 84 >gi|329937113|ref|ZP_08286742.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329303720|gb|EGG47605.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 207 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A LT + + + +S LETG ++ ++ LA T + +LL Sbjct: 19 VAPQLRALRHHAGLTLESAARAADLSPAHLSRLETGHRQPSLPVLLTLARVYGTTVSELL 78 >gi|307329633|ref|ZP_07608791.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884691|gb|EFN15719.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 430 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK +Q + R G + S +S++E G + LA + L +LL Sbjct: 10 GANVAVCRKARGFSQVALARRAGVSVSLLSKIEVGDRALTQGIAAALAQAMGLTLDELL 68 >gi|269976760|ref|ZP_06183735.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|306818115|ref|ZP_07451846.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|269934957|gb|EEZ91516.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|304649079|gb|EFM46373.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 65 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 NN +RK+A +Q+++ G ++ + +E G+ ++ +A T + + + P Sbjct: 3 NNLVTLRKQAGWSQEKLAELLGVSRQTVISIEKGRFDPSLPLAFTIAKTFNCKIEDIFTP 62 >gi|260888022|ref|ZP_05899285.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330838504|ref|YP_004413084.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260862273|gb|EEX76773.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329746268|gb|AEB99624.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 202 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 IF + +RK+A LTQ ++ +Q+ IS ETG + D + L+ + Sbjct: 4 KIFSTKLKYLRKKANLTQVQLAEMLHISQAQISRYETGLDEPSEDCLQALSSAFEI 59 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P +D + F R IR+ +QK+ G +QS IS LE GK+T Sbjct: 72 LPDIPKDSSDGTS------ENFARRLRAIRQYHGKSQKDFAQFLGISQSLISALEIGKAT 125 Query: 61 INIDNMIILAH 71 ++ + L Sbjct: 126 PDLVLIQKLGK 136 >gi|284033167|ref|YP_003383098.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283812460|gb|ADB34299.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 415 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 F R R+ A L+ +++ R G+ S++S++E G+ + D + L Sbjct: 6 FGVQLRRSRQAAALSLRQLATRVGYDHSYLSQVERGRRPGSAD-LAQLCD 54 >gi|268592006|ref|ZP_06126227.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312398|gb|EFE52851.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 101 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RKE +T K++ +Q +S ETG S++++D + + LD +++ Sbjct: 10 VGNYLRKSRKEKNMTGKQLAELINISQQQVSRYETGSSSLSLDQLNEILTVLDKRWIEMI 69 >gi|126731204|ref|ZP_01747012.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] gi|126708506|gb|EBA07564.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] Length = 464 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R E TQ ++ G + S+++ LE + ++++ ++ L Sbjct: 2 KTFIGPRLRRLRIEHGQTQVQMAKELGISTSYVNLLEKNERSVSVPVLLKLFEAYGV 58 >gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus kodakarensis KOD1] Length = 65 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E LTQ+E+ G + I +E GK ++ +A + + Sbjct: 3 NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGLNIEDIF 60 >gi|186687142|ref|YP_001870285.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469445|gb|ACC85244.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 116 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82 + R+ L+Q E+ +TG++ I ++E G+ ++I D + L+ +L+ Sbjct: 6 KLKKTREAKGLSQNELARKTGYSLQNIQKIEQGRAASITFDALGRFCEVLECQPGDILE 64 >gi|333024924|ref|ZP_08452988.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332744776|gb|EGJ75217.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 266 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ + +Q+E+ +R+G + +S +ETGK+ + ++ L+ LD PL + Sbjct: 5 LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPLRE 58 >gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus johnsonii DPC 6026] Length = 288 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|317470678|ref|ZP_07930063.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] gi|316901813|gb|EFV23742.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] Length = 191 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R ++KL+Q E+ + + IS E GK+ ++ ++++L+ L L+ Sbjct: 3 FSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|312865005|ref|ZP_07725233.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311099116|gb|EFQ57332.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 69 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+ KL+Q + G A+ I+ +E GK +++ I LA +LDT L L Sbjct: 2 NRVKEFRQLKKLSQLALAREIGVARQTINLIENGKYNPSLELCIKLAKSLDTDLNSLF 59 >gi|257792106|ref|YP_003182712.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476003|gb|ACV56323.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 63 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R A L+Q ++ G + I +E G + I + TL L L Sbjct: 1 MKAARVAADLSQADLAAAVGATRQTIGLIEAGGYNPTLKLCIAICKTLGCTLDDLF 56 >gi|271966081|ref|YP_003340277.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM 43021] gi|270509256|gb|ACZ87534.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM 43021] Length = 224 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ L ++++ NR G A ++++ +E + I+ + LA LDT +LL Sbjct: 11 LGRRITRRRESLGLDREQLANRAGIAPAYLAYVEQRAAAPAIETINRLACALDTSTAELL 70 >gi|229084745|ref|ZP_04217007.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] gi|228698561|gb|EEL51284.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +LTQ E+ + +S +S++E GK+T ++ + LA L+ LL Sbjct: 4 LGEKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229150820|ref|ZP_04279032.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] gi|228632609|gb|EEK89226.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] Length = 138 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L Q+++ ++S E G++ ++D++ LA D + LL Sbjct: 11 ERLKRLRKLHNLKQRDVAEYLDISESAYGYYEQGRNEPSLDSVRKLAEKYDVSVSYLL 68 >gi|212709326|ref|ZP_03317454.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] gi|212688238|gb|EEB47766.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] Length = 112 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 9 PHLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + + E I+ R IRK + +I + G +Q S E GK I++D Sbjct: 2 KNADEDSKPESNIYSFIIGKELRCIRKRKGFSGAKIAKQLGISQQHYSRYECGKCRISVD 61 Query: 65 NMIILAHTLD 74 ++ + LD Sbjct: 62 TLLSILFVLD 71 >gi|190570720|ref|YP_001975078.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356992|emb|CAQ54381.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 279 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + TQK++ ++ G I E E G + I D + +A L + LL Sbjct: 170 GQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228 Score = 41.1 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQ E+ ++ G A ++ E G I I+ + ++A L + LL Sbjct: 16 GQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLYVIARVLSVNVVDLL 74 >gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] Length = 132 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ RKE LTQ ++ +S+ E G+ ++ + L L L Sbjct: 2 DQKKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRGMPDVSLLQPLCDALGISL 61 Query: 78 WKLL 81 +L Sbjct: 62 NELF 65 >gi|325002546|ref|ZP_08123658.1| Xre family DNA-binding protein [Pseudonocardia sp. P1] Length = 117 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R E + T ++I + ++SE+E G+ + + + + L + Sbjct: 4 REAIGSGLRQARTERRRTLRDISRAARVSLGYLSEVERGRKEPSSELLAAICEALGISVP 63 Query: 79 KLLK 82 LL Sbjct: 64 DLLT 67 >gi|319745678|gb|EFV97977.1| DNA-binding protein [Streptococcus agalactiae ATCC 13813] Length = 197 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|310830889|ref|YP_003965990.1| hypothetical protein PPSC2_p0533 [Paenibacillus polymyxa SC2] gi|309250356|gb|ADO59922.1| hypothetical protein PPSC2_p0533 [Paenibacillus polymyxa SC2] Length = 83 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 F RKE K + ++ N+TG +S+++ LE G +S + + L L L + Sbjct: 19 FGYWVEAKRKELKFSLDDLANKTGIDKSYLARLERGDRSNPSFIAVYSLTKCLGGNLDDI 78 Query: 81 LK 82 + Sbjct: 79 IT 80 >gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] Length = 63 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R +TQ+++ + G ++ I+ +ETGK ++ LA +T + L Sbjct: 3 NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYDPSLPLAFKLARCFETNIEHLF 60 >gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus ATCC 33331] Length = 509 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 116 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK K+TQ+++ N G ++ IS E GK + +++ +A L Sbjct: 1 MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|219856549|ref|YP_002473671.1| hypothetical protein CKR_3206 [Clostridium kluyveri NBRC 12016] gi|219570273|dbj|BAH08257.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 82 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N R + L+Q+E+ R +++IS LE K ++ + + L+ Sbjct: 17 LKNNRLKCGLSQEELAYRCELDRTYISLLEREKRKPTLNVIFKICENLNI 66 >gi|218289095|ref|ZP_03493331.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240678|gb|EED07857.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 391 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R +R+E KLTQ ++ +++ IS E+G+ T + + + +A L Sbjct: 5 FATTLRMLREEKKLTQADLAG-GHLSRTIISLYESGRKTPSYEAIKHIAERLGV 57 >gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335] gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335] Length = 533 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 31/55 (56%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ++ R+ KL+Q+ + R G +QSW+ ++E G+ ++ D+ +L LD Sbjct: 478 KLSGSDINLARQRQKLSQRSLAERLGKSQSWVRDIENGRFKVSRDDQALLRKELD 532 >gi|145299927|ref|YP_001142768.1| DNA-binding transcriptional repressor PuuR [Aeromonas salmonicida subsp. salmonicida A449] gi|142852699|gb|ABO91020.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 187 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ L+Q+ + +G I +E K + ++ ++ L + + PL + Sbjct: 9 KSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLNVYELPLSR 68 Query: 80 LL 81 Sbjct: 69 FF 70 >gi|147678779|ref|YP_001212994.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146274876|dbj|BAF60625.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 97 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 13/87 (14%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNI-------------RKEAKLTQKEIRNRTGFA 47 MP R+ D + F +R RKE +TQK++ ++ G Sbjct: 3 MPFREVDISKIIKQKCESDPEFSRAYRQASAELDLIAQIIKTRKEKGMTQKDVADKAGLT 62 Query: 48 QSWISELETGKSTINIDNMIILAHTLD 74 Q +S +E+ + N N++ +A LD Sbjct: 63 QQMVSRIESREHLPNYRNLVKIADALD 89 >gi|90962813|ref|YP_536728.1| transcriptional regulator [Lactobacillus salivarius UCC118] gi|301299968|ref|ZP_07206194.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|90822007|gb|ABE00645.1| Transcriptional regulator [Lactobacillus salivarius UCC118] gi|300852423|gb|EFK80081.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 123 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + NN ++RK+ ++Q + ++ G + I +LE G ++I+ +I L+ P+ Sbjct: 8 KVLKNNIISLRKKYHVSQIALADKLGVGRDAIIKLENGTRRLSINELIKLSDFFKVPIND 67 Query: 80 LL 81 L+ Sbjct: 68 LI 69 >gi|53714235|ref|YP_100227.1| hypothetical protein BF2945 [Bacteroides fragilis YCH46] gi|253564751|ref|ZP_04842207.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265766272|ref|ZP_06094313.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52217100|dbj|BAD49693.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|251946216|gb|EES86593.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253940|gb|EEZ25405.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 104 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 5 KRDEPHLSD-AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++D P + + R+ LTQ+E+ N G ++ IS +E GK + Sbjct: 19 EKDTPKRDKFEADLHSFLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGK-NLTF 77 Query: 64 DNMIILAHTLDTP 76 + + + Sbjct: 78 STISRVFKAMGIS 90 >gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 99 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER I+ N R +R E +++ ++ I LE G + ++D + + + P+ Sbjct: 20 ERTIY-NRIRVLRTERDMSRAQLAELVDVNPQTIGALERGDHSPSLDLALRICDVFNLPI 78 Query: 78 WKLL 81 + Sbjct: 79 EAIF 82 >gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 210 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R+ Q E+ +R G ++S ++ +E G+S ++ I +A + +L Sbjct: 8 IKELRERRGWPQTELADRAGISRSSLATIEIGRSVPKVETSIKIAKVFGMTVEEL 62 >gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 117 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RKE +TQ+++ G ++ IS E GK + + +A +T L Sbjct: 1 MIGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKGKKAPGRETLEKIADFFNTTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|304397757|ref|ZP_07379634.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304354929|gb|EFM19299.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R+ + RTG +++ + ++E G+S+ + + +A + P Sbjct: 12 LRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62 >gi|289427920|ref|ZP_06429624.1| cupin domain protein [Propionibacterium acnes J165] gi|289158803|gb|EFD07003.1| cupin domain protein [Propionibacterium acnes J165] gi|332676593|gb|AEE73409.1| putative transcriptional regulator [Propionibacterium acnes 266] Length = 288 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P + + + R + T ++ + G ++ + +E G Sbjct: 85 LPTKCIIMHCMDTGAEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 + ++ L+ L L L++P Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167 >gi|317053257|ref|YP_004119024.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952996|gb|ADU72468.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 157 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N FR R +Q+++ G + + +E G ++ + LA + +L Sbjct: 4 GNKFREYRLARAWSQEQLAEMAGLSTRTVQRIENGDR-PGLETLSALASVFGVSVSEL 60 >gi|253690628|ref|YP_003019818.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757206|gb|ACT15282.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 188 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+E + TG +++ + ++E G+S+ + + +A L+ ++ Sbjct: 10 GNTLKTLRQEKGWSLTRSSEETGVSKAMLGQIERGESSPTVATLWKIATGLNVAFSTFIQ 69 Query: 83 P 83 P Sbjct: 70 P 70 >gi|228984945|ref|ZP_04145114.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774768|gb|EEM23165.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 167 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 31/56 (55%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ +Q+++ + + + + E KS +IDN+I+L+ + L +L+K Sbjct: 14 KKLRESKGFSQEDVAKKISVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELIK 69 >gi|255308189|ref|ZP_05352360.1| hypothetical protein CdifA_16466 [Clostridium difficile ATCC 43255] Length = 73 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWKL 80 + RK+ LTQK++ +QS+IS LE ++ I +I L+ LD +KL Sbjct: 2 LKQARKDKNLTQKQLSKIANISQSYISRLEQDIFINSPTIRQIISLSKALDISAYKL 58 >gi|206973030|ref|ZP_03233952.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206731914|gb|EDZ49114.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 108 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ + ++S I E + + + +I +A + Sbjct: 2 KTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|153956225|ref|YP_001396990.1| hypothetical protein CKL_3629 [Clostridium kluyveri DSM 555] gi|146349083|gb|EDK35619.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 76 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N R + L+Q+E+ R +++IS LE K ++ + + L+ Sbjct: 11 LKNNRLKCGLSQEELAYRCELDRTYISLLEREKRKPTLNVIFKICENLNI 60 >gi|15789706|ref|NP_279530.1| hypothetical protein VNG0471C [Halobacterium sp. NRC-1] gi|169235420|ref|YP_001688620.1| transcription regulator-like protein [Halobacterium salinarum R1] gi|10580078|gb|AAG19010.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726486|emb|CAP13271.1| transcription regulator homolog [Halobacterium salinarum R1] Length = 66 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ R R EA L+Q ++ G + I+ +E + +I+ LA D + L P Sbjct: 3 NHVRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLFDP 62 >gi|54296056|ref|YP_122425.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris] gi|148358226|ref|YP_001249433.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby] gi|296105580|ref|YP_003617280.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99 Alcoy] gi|53749841|emb|CAH11222.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris] gi|148279999|gb|ABQ54087.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby] gi|295647481|gb|ADG23328.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99 Alcoy] Length = 94 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R++A LTQ+E+ R G + IS LE G + + + + AH Sbjct: 37 MRQKAGLTQEELAERMGTKKGNISRLEKGNTNPSWNTLEKYAHACG 82 >gi|311069888|ref|YP_003974811.1| transcriptional repressor [Bacillus atrophaeus 1942] gi|310870405|gb|ADP33880.1| transcriptional repressor [Bacillus atrophaeus 1942] Length = 134 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R+E KLT ++ +G + + IS +E GK + LA L P L Sbjct: 3 FGEQLRTLREERKLTVNQLAIYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEDL 62 Query: 81 LK 82 +K Sbjct: 63 MK 64 >gi|307710243|ref|ZP_07646686.1| mutR [Streptococcus mitis SK564] gi|307619005|gb|EFN98138.1| mutR [Streptococcus mitis SK564] Length = 287 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|302521428|ref|ZP_07273770.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302430323|gb|EFL02139.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 275 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 32/58 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ + +Q+E+ +R+G + +S +ETGK+ + ++ L+ LD PL + Sbjct: 10 VGALLRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPLRE 67 >gi|260777358|ref|ZP_05886252.1| hypothetical protein VIC_002752 [Vibrio coralliilyticus ATCC BAA-450] gi|260607024|gb|EEX33298.1| hypothetical protein VIC_002752 [Vibrio coralliilyticus ATCC BAA-450] Length = 270 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNR--------TGFAQSWISELETGKSTINIDNMIILA 70 + F + +R+E +L+Q+E+ + +G Q IS+ E GK+T + + LA Sbjct: 3 KENFSERLKQLREERQLSQEELADLLSSSHRAFSGVNQVMISQWERGKTTPSFVRRVGLA 62 Query: 71 HTLDTP 76 Sbjct: 63 SFFQVE 68 >gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] Length = 335 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK+ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae LMA3894-4] Length = 181 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + +RK L+ TG +++ + ++E G+S+ I + +A L+ Sbjct: 7 KSQIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62 >gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184192|dbj|BAH32296.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 168 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+++ +++ G + ++S++E G + D + +A L L Sbjct: 41 IRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSSEVL 95 >gi|298530403|ref|ZP_07017805.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] gi|298509777|gb|EFI33681.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] Length = 93 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L++ F + R +A LTQ E+ R G Q+ I+ LE+G+ ++ + A Sbjct: 24 LQDEFGFASMLIEARTKAGLTQTELARRMGMKQAGIARLESGRHNPSMKTLQKYAAATGH 83 Query: 76 PLWKLLKP 83 L + P Sbjct: 84 ELSVRMLP 91 >gi|182683080|ref|YP_001834827.1| hypothetical protein SPCG_0110 [Streptococcus pneumoniae CGSP14] gi|182628414|gb|ACB89362.1| hypothetical protein SPCG_0110 [Streptococcus pneumoniae CGSP14] gi|301801071|emb|CBW33738.1| unnamed protein product [Streptococcus pneumoniae INV200] Length = 299 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 14 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 72 Query: 79 K 79 + Sbjct: 73 E 73 >gi|148983502|ref|ZP_01816821.1| hypothetical protein CGSSp3BS71_05209 [Streptococcus pneumoniae SP3-BS71] gi|147923649|gb|EDK74761.1| hypothetical protein CGSSp3BS71_05209 [Streptococcus pneumoniae SP3-BS71] gi|301799283|emb|CBW31809.1| Conserved hypothetical [Streptococcus pneumoniae OXC141] Length = 287 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|149005856|ref|ZP_01829585.1| hypothetical protein CGSSp18BS74_06755 [Streptococcus pneumoniae SP18-BS74] gi|168483749|ref|ZP_02708701.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC1873-00] gi|307126339|ref|YP_003878370.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae 670-6B] gi|147762212|gb|EDK69173.1| hypothetical protein CGSSp18BS74_06755 [Streptococcus pneumoniae SP18-BS74] gi|172042876|gb|EDT50922.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC1873-00] gi|306483401|gb|ADM90270.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B] gi|332205146|gb|EGJ19209.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 282 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|148996522|ref|ZP_01824240.1| hypothetical protein CGSSp11BS70_07500 [Streptococcus pneumoniae SP11-BS70] gi|168577050|ref|ZP_02722879.1| helix-turn-helix domain protein [Streptococcus pneumoniae MLV-016] gi|307066788|ref|YP_003875754.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147757097|gb|EDK64136.1| hypothetical protein CGSSp11BS70_07500 [Streptococcus pneumoniae SP11-BS70] gi|183577291|gb|EDT97819.1| helix-turn-helix domain protein [Streptococcus pneumoniae MLV-016] gi|306408325|gb|ADM83752.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 287 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|138893751|ref|YP_001124204.1| Xre family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196250794|ref|ZP_03149481.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265264|gb|ABO65459.1| Transcriptional regulator Xre family [Geobacillus thermodenitrificans NG80-2] gi|196209744|gb|EDY04516.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 73 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ + G + S + E+E G + + +A L+ + Sbjct: 2 EAERWGRRIRAFRKLKGYTQERLAKELGVSVSILGEIERGNRMPSDSLVEQIAELLNISV 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 EELTPP 67 >gi|15902148|ref|NP_357698.1| hypothetical protein spr0104 [Streptococcus pneumoniae R6] gi|15457641|gb|AAK98908.1| Hypothetical protein spr0104 [Streptococcus pneumoniae R6] Length = 299 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 14 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 72 Query: 79 K 79 + Sbjct: 73 E 73 >gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] Length = 334 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK+ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK ++ ++ + G + IS+ E + + +D + LA TL P L Sbjct: 9 VGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPKLDVVHNLAATLKFPHDYFL 68 Query: 82 KP 83 +P Sbjct: 69 RP 70 >gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1] Length = 182 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ R +R L+Q+E+ R G S IS +E +S ++ + + + + Sbjct: 2 RIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMA 61 Query: 79 KLL 81 + Sbjct: 62 EFF 64 >gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E +TQK++ R + +S+ E G ++ + LA T + LL Sbjct: 29 GQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGCPDVSLLSALADVFGTDIRVLL 87 >gi|229170504|ref|ZP_04298155.1| transcriptional regulator, XRE [Bacillus cereus AH621] gi|228612974|gb|EEK70148.1| transcriptional regulator, XRE [Bacillus cereus AH621] Length = 108 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ + ++S I E + + + +I +A + Sbjct: 2 KTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|222081872|ref|YP_002541237.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726551|gb|ACM29640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 174 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R L+Q+E+ R G S IS +E+ + ++ + + + L + Sbjct: 1 MRHLRVAHNLSQRELAKRAGVTNSTISLIESNSANPSVGALKRILDGIPIGLAEFF 56 >gi|218675074|ref|ZP_03524743.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 469 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|167746263|ref|ZP_02418390.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] gi|167654256|gb|EDR98385.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] Length = 191 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R ++KL+Q E+ + + IS E GK+ ++ ++++L+ L L+ Sbjct: 3 FSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|167033734|ref|YP_001668965.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860222|gb|ABY98629.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 180 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + +TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60 >gi|33598043|ref|NP_885686.1| MerR family transcriptional regulator [Bordetella parapertussis 12822] gi|33602935|ref|NP_890495.1| MerR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33568566|emb|CAE34324.1| probable MerR-family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33574472|emb|CAE38810.1| probable MerR-family transcriptional regulator [Bordetella parapertussis] Length = 271 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 8 EPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 P D +R FR R++ ++ +E + TG S+IS E + Sbjct: 74 APAPQDPARPKRSANTQQLGRQFRVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAV 133 Query: 64 DNMIILAHTLDTPLWKLLKP 83 ++ LA T + +L P Sbjct: 134 ASLQRLAACYGTTVTELSAP 153 >gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 112 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ LT+++ + +++S++E G+ ++ I +A TL L L+ Sbjct: 13 GKRIKAERERNGLTREKFSELVSISPTYLSQIELGQRHPSLPTTIKIASTLHISLDFLV 71 >gi|324995381|gb|EGC27293.1| transcriptional regulator [Streptococcus sanguinis SK678] Length = 108 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102 >gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 190 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +T +E+ R+G + I ++E G ++ +I ++ TL L LL Sbjct: 6 VGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDILPSLTPLIKISRTLGVRLGTLL 65 >gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 164 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+++ LTQ+++ + G IS E G +I+ + +LA + + +LL Sbjct: 7 GKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNYMPDIEMLQLLAKEFNVSINELL 65 >gi|296122323|ref|YP_003630101.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014663|gb|ADG67902.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 196 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 32/75 (42%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 L + + R +R++ + ++ + +G ++S +S++E ++ + Sbjct: 5 SSDLPTPSDAISQMLCHRVRELRQQNGWSLDQLSSASGVSRSMLSQIERNQANPTLAVTA 64 Query: 68 ILAHTLDTPLWKLLK 82 +A + +L++ Sbjct: 65 RIAQAFGLTIGQLVE 79 >gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229322893|gb|EEN88667.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 168 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+++ +++ G + ++S++E G + D + +A L L Sbjct: 41 IRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSSEVL 95 >gi|228982439|ref|ZP_04142698.1| hypothetical protein bthur0002_55720 [Bacillus thuringiensis Bt407] gi|228776622|gb|EEM24930.1| hypothetical protein bthur0002_55720 [Bacillus thuringiensis Bt407] Length = 317 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 ++ F +++R +++ +G + S+I LE G+ + ++ + LA L+ P Sbjct: 176 DQENFGALLKHLRLSKGYALEDVGRLSGVSASYIHLLEKGQRQSPTLETVEKLAEGLEVP 235 Query: 77 LWKLLK 82 + K Sbjct: 236 VQYFFK 241 >gi|228984873|ref|ZP_04145043.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774823|gb|EEM23219.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229109238|ref|ZP_04238837.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228674248|gb|EEL29493.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229149987|ref|ZP_04278212.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228633425|gb|EEK90029.1| Transcriptional regulator, Xre [Bacillus cereus m1550] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229155360|ref|ZP_04283470.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228628075|gb|EEK84792.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|229195999|ref|ZP_04322751.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228587381|gb|EEK45447.1| Transcriptional regulator, Xre [Bacillus cereus m1293] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|225857979|ref|YP_002739489.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|225720626|gb|ACO16480.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] Length = 287 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|218234393|ref|YP_002366467.1| DNA-binding protein [Bacillus cereus B4264] gi|218162350|gb|ACK62342.1| DNA-binding protein [Bacillus cereus B4264] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|163786116|ref|ZP_02180564.1| hypothetical protein FBALC1_13062 [Flavobacteriales bacterium ALC-1] gi|159877976|gb|EDP72032.1| hypothetical protein FBALC1_13062 [Flavobacteriales bacterium ALC-1] Length = 189 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ +N RK TQ+E+ ++T I +E G+ ++ + +LA LD + Sbjct: 2 KKQTLKDNLLYQRKLKGFTQEELADKTTVGVRTIQRIEKGEVQPHLQTVKLLAVGLDVEV 61 Query: 78 WKLLK 82 LLK Sbjct: 62 DDLLK 66 >gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] Length = 171 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK L+Q+++ + ++ IS+ E G + ++DN+I ++ D L Sbjct: 1 MTFSEKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMG-AIPDMDNVIKISRFFDCSLDY 59 Query: 80 LL 81 L+ Sbjct: 60 LM 61 >gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 109 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R++A TQ + G + +S +E G S I+++ + L L +++ Sbjct: 12 GGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGVSADRII 70 >gi|153831210|ref|ZP_01983877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|148873308|gb|EDL71443.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] Length = 181 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N +N+RK L+ TG +++ + ++E G+S+ I + +A + Sbjct: 7 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFE 62 >gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 470 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R +R E L+Q + + G + S++++LE + + + ++ L L Sbjct: 2 KKTFMGVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGV 59 >gi|116515314|ref|YP_815612.1| hypothetical protein SPD_0112 [Streptococcus pneumoniae D39] gi|116075890|gb|ABJ53610.1| conserved hypothetical protein [Streptococcus pneumoniae D39] Length = 287 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L] gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820] gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI] gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L] gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820] gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R E TQ+E+ R G ++ I+ LE K ++ +A+ + P+ + Sbjct: 1 MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDV 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|47565459|ref|ZP_00236500.1| transcriptional regulator, XRE family [Bacillus cereus G9241] gi|47557449|gb|EAL15776.1| transcriptional regulator, XRE family [Bacillus cereus G9241] Length = 404 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ LL Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 183 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + KLTQ+ + + ++ ++ +E + ++ + +A L + +LL Sbjct: 7 GMRIRQLRSQRKLTQQALADMAEIPRATLATVEKDDANPSLAVVYKIARALGLSIDQLL 65 >gi|312131208|ref|YP_003998548.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311907754|gb|ADQ18195.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 96 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 R R+E +LTQ E+ G + +IS++E S + + + + Sbjct: 38 LRKAREEKQLTQAELAEAVGKKREYISKIENNGSNLTLKTLYDIVE 83 >gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612] gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612] Length = 113 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + +RKE LTQ ++ + G + I LE G+ +I +A T + L Sbjct: 43 NRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYNPSIMLAYKIARLFGTTIEAL 99 >gi|320107125|ref|YP_004182715.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319925646|gb|ADV82721.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 112 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 25/54 (46%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE LTQ ++ + G + I E G S +D + LA L +LL Sbjct: 9 RLRKERSLTQPQLAEKIGLHVAQIRRYEAGTSQPTLDVIRSLAVALGVSADELL 62 >gi|291561113|emb|CBL39912.1| transcriptional regulator, XRE family [butyrate-producing bacterium SS3/4] Length = 94 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 24/51 (47%) Query: 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +TQKE+ RTG Q+ IS LE G +I + LA + L P Sbjct: 40 QNMTQKELSERTGINQTEISRLENGSRNPSIKLLQRLAEGMGMTLKISFVP 90 >gi|291523313|emb|CBK81606.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 130 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R RK +LTQ+E+ + + + I+ +E K + + LA L L L+ P Sbjct: 11 QKMREARKNKELTQQELSDLSHVSVKQIANIEKWKMNPSYLILRALAKVLLISLDTLINP 70 >gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 334 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK+ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSKLFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 192 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ + ++ +G +++ I ++E G+S+ + LA + D + +L+ Sbjct: 17 GQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLAGSFDMSMSQLI 75 >gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 70 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +TQK + G ++ I+ +E G+ I + LD L L Sbjct: 7 IKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYNPTIKLCRKICRVLDKSLDDLF 62 >gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] Length = 181 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + N + +RK L+ TG +++ + ++E G+S+ I + +A + Sbjct: 7 KSQIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFE 62 >gi|222147627|ref|YP_002548584.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734615|gb|ACM35578.1| transcriptional regulator [Agrobacterium vitis S4] Length = 469 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IF R +R LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 DHKIFAGPRVRRVRNGLGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|222087937|ref|YP_002545814.1| transcriptional regulator, XRE family [Agrobacterium radiobacter K84] gi|221725385|gb|ACM28541.1| transcriptional regulator, XRE family [Agrobacterium radiobacter K84] Length = 87 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R N R +R ++Q ++ +S+ LE G + + LA L + Sbjct: 3 ARQRVALNLRRLRVLRGISQDDLALAADIERSYAGYLERGGKNPTVTTLEKLAAALSCDI 62 Query: 78 WKLLKP 83 + P Sbjct: 63 SEFFAP 68 >gi|197301908|ref|ZP_03166972.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] gi|197298976|gb|EDY33512.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] Length = 111 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R + TQ+ ++G + S+ +++E G+ +I+ + LA T L Sbjct: 7 KSIGRTLKERRLQLGYTQELAAEKSGISYSYYTKIERGEQLPSIEICVQLAQTFHLSL 64 >gi|168487063|ref|ZP_02711571.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC1087-00] gi|183570019|gb|EDT90547.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC1087-00] Length = 287 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|219847619|ref|YP_002462052.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541878|gb|ACL23616.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 779 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R LTQ E+ R G + + I ++E + + + +LA L P + Sbjct: 9 FGYWVRRRRLALDLTQAELGRRAGVSAAAIRKIEADERRPSCELAELLASALGVPAEE 66 >gi|114568709|ref|YP_755389.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339171|gb|ABI64451.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 115 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + + R ++TQ + + +S +E G S + + + L L+ L Sbjct: 13 LFCSRLKQARSNRRMTQSALAEASDLTVDMVSRIERGTSFPSFNALARLVEALEIDPAFL 72 Query: 81 L 81 Sbjct: 73 F 73 >gi|90424563|ref|YP_532933.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90106577|gb|ABD88614.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 135 Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%) Query: 5 KRDEPHLSDAILR----ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 KR + L +R+ +N R IR+ + Q E+ G +Q+++SE+ETG+ Sbjct: 53 KRALKEGREVALPKAVADRLAKGDNAIRVIREWRDMIQDELAVAVGISQNYLSEIETGRR 112 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + + A L P+ L++ Sbjct: 113 KGPAELQMKFARALGVPIDLLIE 135 >gi|325002074|ref|ZP_08123186.1| DNA-binding protein [Pseudonocardia sp. P1] Length = 184 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 ++ E+ R G A+S +S+LE G +++ + +A P L++P Sbjct: 22 GISSAELARRAGIAKSTLSQLEAGTGNPSVETLWAIAVVAGVPFSTLVEP 71 >gi|323142572|ref|ZP_08077388.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413005|gb|EFY03908.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 125 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R E +Q ++ G + + +S +E G++ +++ ++ LA L+ Sbjct: 16 GQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEK 68 >gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4] gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4] Length = 176 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 D E + R R+ A+++ +++ R G + ++S++E G + + + + Sbjct: 51 VDGDRRSSESQDIGSFIRAQREAAQVSIRQLAERAGVSNPYLSQIERGLRKPSAEVLGQI 110 Query: 70 AHTLDTPLWKL 80 A L L Sbjct: 111 ARGLRLSAEVL 121 >gi|296282575|ref|ZP_06860573.1| transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 104 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R + R +R + +Q E+ R AQS +S++E G+ + +D + + +D Sbjct: 1 MTKRPMINEALRLLRLYCRYSQAEMAERLSVAQSMVSDVERGRKNVTMDLLEAYSRAVDI 60 Query: 76 PLWKLL 81 + +LL Sbjct: 61 RMSQLL 66 >gi|257877834|ref|ZP_05657487.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812000|gb|EEV40820.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 168 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+M F + +R LTQ++ + + +S E ++ +++ +I +A + L Sbjct: 10 EKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFELSL 69 Query: 78 WKLL 81 +L+ Sbjct: 70 DELI 73 >gi|283797098|ref|ZP_06346251.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075515|gb|EFE12879.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 111 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ +++ + + A S++ +E G + ++++ L H L +L Sbjct: 10 GGRIRKCREALGYSRETLAEKADLASSFLGTIELGSGSFTAESLVKLCHALGVSADYIL 68 >gi|218673688|ref|ZP_03523357.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 99 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R RK+ +T ++ TG + +S++E G + ++ + L+ L PL Sbjct: 36 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 95 Query: 80 LLK 82 + Sbjct: 96 FFR 98 >gi|205352715|ref|YP_002226516.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856901|ref|YP_002243552.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272496|emb|CAR37385.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708704|emb|CAR33030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627783|gb|EGE34126.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 178 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|200390330|ref|ZP_03216941.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602775|gb|EDZ01321.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 178 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521] gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521] gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 73 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + +TQKE+ R G ++ ++ +E G+ I + L L L Sbjct: 7 IKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIKLCRSICKVLGKKLDDLF 62 >gi|119899345|ref|YP_934558.1| anaerobic benzoate catabolism transcriptional regulator [Azoarcus sp. BH72] gi|119671758|emb|CAL95672.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 304 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R IR +T+K + G ++ ++ LE G+ ++I + + LD L + Sbjct: 31 MSLGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEAGEGNVSIVLLRHITRALDVSLIE 90 Query: 80 LLKP 83 LL P Sbjct: 91 LLAP 94 >gi|328477982|gb|EGF47897.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 70 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R + LTQ+++ +R ++ +S LE G+ ++ L+H + P+ ++ Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60 >gi|325067367|ref|ZP_08126040.1| helix-turn-helix domain-containing protein [Actinomyces oris K20] Length = 107 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +R E + + R+ N R A ++Q E+ R G QS IS +E G Sbjct: 25 MTEAERAEYNRAAIETEARLQLAELVYNARAAAGISQTELARRAGTRQSVISAIENGAQA 84 Query: 61 INIDNMIILAHTLD 74 + +AH L Sbjct: 85 PGGVMLARIAHALG 98 >gi|325678585|ref|ZP_08158195.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109635|gb|EGC03841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 220 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E +Q+ + + ++ +S E K ++ +++IL+ L +L+K Sbjct: 28 KTIRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKCYPDVHSLLILSDLFGVSLDELIK 86 >gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] Length = 155 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H + I+ ++ +R+E +TQ E+ + G +S E G +I M+ L Sbjct: 9 HKKEGIILDQKKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNYMPDIATMLSL 68 Query: 70 AHTLDTPLWKLL 81 + + +LL Sbjct: 69 CEEFEISINELL 80 >gi|315650501|ref|ZP_07903570.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315487239|gb|EFU77552.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 79 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ RK L+Q + + G ++ I+ +ETGK T ++ +A+ L L+ + Sbjct: 3 NHIERYRKPLGLSQHRLGKKVGVSRIAINRIETGKVTPSLRLANDIANALGVCLYDIF 60 >gi|299145747|ref|ZP_07038815.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|298516238|gb|EFI40119.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 138 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + IRKE ++Q+ + + G++ I+ +E +TI+ID ++ L Sbjct: 78 LGSILALIRKEKAISQRALAEKAGYSHLTIANIERKTTTISIDTLLKTVDVLG 130 >gi|293385315|ref|ZP_06631128.1| DNA-binding protein [Enterococcus faecalis R712] gi|293386573|ref|ZP_06631156.1| DNA-binding protein [Enterococcus faecalis S613] gi|312908107|ref|ZP_07767087.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979000|ref|ZP_07790720.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291077421|gb|EFE14785.1| DNA-binding protein [Enterococcus faecalis R712] gi|291083978|gb|EFE20941.1| DNA-binding protein [Enterococcus faecalis S613] gi|310625918|gb|EFQ09201.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288179|gb|EFQ66735.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 320 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+I N + R+ +TQ+ + + +IS+ E GK + + L+ + Sbjct: 16 RLIIGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISID 75 Query: 79 KLL 81 LL Sbjct: 76 DLL 78 >gi|257437945|ref|ZP_05613700.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199605|gb|EEU97889.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 231 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RKE +TQK+ G +Q+ +S E G +D ++ +A + LL Sbjct: 3 FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62 >gi|284033097|ref|YP_003383028.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283812390|gb|ADB34229.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 801 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74 R R A LTQ + + G ++ +S LE G + I + LA L Sbjct: 10 LRQFRTAAGLTQGGLAEKAGLSEQAVSLLERGTRRRPRIATVHALAEALG 59 >gi|239820501|ref|YP_002947686.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805354|gb|ACS22420.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 173 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 A ++ E+ +G + S +S +E G + +++ + LA L P + Sbjct: 2 AADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 51 >gi|239817491|ref|YP_002946401.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804068|gb|ACS21135.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 173 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 24/50 (48%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 A ++ E+ +G + S +S +E G + +++ + LA L P + Sbjct: 2 AADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 51 >gi|209547982|ref|YP_002279899.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533738|gb|ACI53673.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 469 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLATVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 405 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ G + +S+ E+G S +I+ + +LA + + KLL Sbjct: 6 GKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64 >gi|149010976|ref|ZP_01832281.1| hypothetical protein CGSSp19BS75_10988 [Streptococcus pneumoniae SP19-BS75] gi|225860151|ref|YP_002741660.1| helix-turn-helix domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298501908|ref|YP_003723848.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae TCH8431/19A] gi|303254794|ref|ZP_07340894.1| hypothetical protein CGSSpBS455_05005 [Streptococcus pneumoniae BS455] gi|303259156|ref|ZP_07345134.1| hypothetical protein CGSSp9vBS293_02147 [Streptococcus pneumoniae SP-BS293] gi|303260913|ref|ZP_07346862.1| hypothetical protein CGSSp14BS292_02028 [Streptococcus pneumoniae SP14-BS292] gi|303263240|ref|ZP_07349163.1| hypothetical protein CGSSpBS397_02701 [Streptococcus pneumoniae BS397] gi|147764612|gb|EDK71542.1| hypothetical protein CGSSp19BS75_10988 [Streptococcus pneumoniae SP19-BS75] gi|225726428|gb|ACO22279.1| helix-turn-helix domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298237503|gb|ADI68634.1| helix-turn-helix domain protein [Streptococcus pneumoniae TCH8431/19A] gi|302598231|gb|EFL65277.1| hypothetical protein CGSSpBS455_05005 [Streptococcus pneumoniae BS455] gi|302637750|gb|EFL68236.1| hypothetical protein CGSSp14BS292_02028 [Streptococcus pneumoniae SP14-BS292] gi|302639574|gb|EFL70031.1| hypothetical protein CGSSpBS293_02147 [Streptococcus pneumoniae SP-BS293] gi|302647013|gb|EFL77237.1| hypothetical protein CGSSpBS397_02701 [Streptococcus pneumoniae BS397] gi|327390524|gb|EGE88864.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332077417|gb|EGI87878.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] Length = 287 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 404 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ G + +S+ E+G S +I+ + +LA + + KLL Sbjct: 6 GKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64 >gi|16080419|ref|NP_391246.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] gi|221311316|ref|ZP_03593163.1| hypothetical protein Bsubs1_18266 [Bacillus subtilis subsp. subtilis str. 168] gi|221315643|ref|ZP_03597448.1| hypothetical protein BsubsN3_18182 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320559|ref|ZP_03601853.1| hypothetical protein BsubsJ_18150 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324843|ref|ZP_03606137.1| hypothetical protein BsubsS_18301 [Bacillus subtilis subsp. subtilis str. SMY] gi|296330426|ref|ZP_06872906.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675972|ref|YP_003867644.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] gi|81637534|sp|O32236|RGHR_BACSU RecName: Full=HTH-type transcriptional repressor rghR; AltName: Full=RapGH repressor gi|2635879|emb|CAB15371.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str. 168] gi|2702241|gb|AAB91590.1| Yvan [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|291485899|dbj|BAI86974.1| hypothetical protein BSNT_05102 [Bacillus subtilis subsp. natto BEST195] gi|296152429|gb|EFG93298.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414216|gb|ADM39335.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii str. W23] Length = 135 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 F R +R+E KLT ++ +G + + IS +E GK + LA L P Sbjct: 2 ESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYE 61 Query: 79 KLL 81 L+ Sbjct: 62 GLM 64 >gi|16802162|ref|NP_463647.1| hypothetical protein lmo0114 [Listeria monocytogenes EGD-e] gi|46906354|ref|YP_012743.1| repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092250|ref|ZP_00230042.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095185|ref|ZP_00232797.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|116871527|ref|YP_848308.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217965783|ref|YP_002351461.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|224498185|ref|ZP_03666534.1| helix-turn-helix domain protein [Listeria monocytogenes Finland 1988] gi|224502962|ref|ZP_03671269.1| helix-turn-helix domain protein [Listeria monocytogenes FSL R2-561] gi|226222753|ref|YP_002756860.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes Clip81459] gi|254827546|ref|ZP_05232233.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254832362|ref|ZP_05237017.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes 10403S] gi|254899558|ref|ZP_05259482.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes J0161] gi|254913239|ref|ZP_05263251.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937620|ref|ZP_05269317.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254991791|ref|ZP_05273981.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-064] gi|255016940|ref|ZP_05289066.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL F2-515] gi|255022366|ref|ZP_05294352.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-208] gi|255025309|ref|ZP_05297295.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-003] gi|255028080|ref|ZP_05300031.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes LO28] gi|255519835|ref|ZP_05387072.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-175] gi|284803147|ref|YP_003415012.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284996288|ref|YP_003418056.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|12054764|emb|CAC20620.1| AX protein [Listeria monocytogenes] gi|16409473|emb|CAC98329.1| lmo0114 [Listeria monocytogenes EGD-e] gi|46879618|gb|AAT02920.1| putative prophage LambdaLm01, repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016530|gb|EAL07451.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019452|gb|EAL10193.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|116740405|emb|CAK19525.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217335053|gb|ACK40847.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|225875215|emb|CAS03909.1| Putative repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599922|gb|EEW13247.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258610220|gb|EEW22828.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284058709|gb|ADB69650.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284061755|gb|ADB72694.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|293591239|gb|EFF99573.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307569672|emb|CAR82851.1| repressor protein, putative [Listeria monocytogenes L99] gi|313611579|gb|EFR86184.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria monocytogenes FSL F2-208] gi|328468450|gb|EGF39456.1| hypothetical protein LM1816_04172 [Listeria monocytogenes 1816] gi|328472713|gb|EGF43568.1| hypothetical protein LM220_04442 [Listeria monocytogenes 220] gi|332310528|gb|EGJ23623.1| Bacteriophage-type repressor [Listeria monocytogenes str. Scott A] Length = 111 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + + + IS E G N D + LA + L Sbjct: 5 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|325833116|ref|ZP_08165664.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485672|gb|EGC88139.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 75 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 25/65 (38%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R IR+ L+Q ++ ++ +E+G I+ + +A L + Sbjct: 10 DRKRLGMRVSRIRQAKGLSQSRFAMMLEMSRPTLNMIESGYDNFKINTLARIARGLGVEI 69 Query: 78 WKLLK 82 L K Sbjct: 70 EDLFK 74 >gi|318056750|ref|ZP_07975473.1| transcriptional regulator, XRE family protein [Streptomyces sp. SA3_actG] gi|318079624|ref|ZP_07986956.1| transcriptional regulator, XRE family protein [Streptomyces sp. SA3_actF] Length = 266 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ + +Q+E+ +R+G + +S +ETGK+ + ++ L+ LD PL + Sbjct: 5 LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPLRE 58 >gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 3 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62 >gi|303241851|ref|ZP_07328346.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590626|gb|EFL60379.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 223 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +R++++L+QK+I + G + ++ E K + + + LA + Sbjct: 1 MSFASMLKQLREQSRLSQKDIADYLGITRQAVASYELAKREPDYEILKKLADYFGVSIDY 60 Query: 80 LL 81 +L Sbjct: 61 IL 62 >gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 203 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 34/58 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+E+ ++ G ++ +S+ E+ +ST +++ +II++ +LK Sbjct: 6 RIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYILK 63 >gi|168185803|ref|ZP_02620438.1| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296146|gb|EDS78279.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 221 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 31/56 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ R +A +T+K++ + G A+ +I E+E+GK IN M ++ L L Sbjct: 4 VGSKIRDARLKANVTEKQLARKIGVAEKFIKEVESGKKVINESVMEKISKVLGKDL 59 >gi|196048279|ref|ZP_03115456.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196021016|gb|EDX59746.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 184 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + + S +S++E G + ++ + +++ L+ PL+ Sbjct: 7 GEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIPLFNFF 65 >gi|160946750|ref|ZP_02093953.1| hypothetical protein PEPMIC_00709 [Parvimonas micra ATCC 33270] gi|158447134|gb|EDP24129.1| hypothetical protein PEPMIC_00709 [Parvimonas micra ATCC 33270] Length = 120 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+N + + A L Q E+ ++ QS IS+ GK D + LA L+ L+ Sbjct: 5 FLNRLKAAMQSANLNQCELAKKSNITQSSISDWLNGKYVPKQDKIDALAQALNVTPAYLM 64 >gi|149370530|ref|ZP_01890219.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49] gi|149356081|gb|EDM44638.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49] Length = 104 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R A +Q E+ +TG ++S I+ +E G +I ++I +A +L+ Sbjct: 17 WGEKLSALRVAAGWSQTELAEKTGMSRSSIAGIEKG-RNFSIASLISIARSLE 68 >gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium] Length = 203 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 34/58 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+E+ ++ G ++ +S+ E+ +ST +++ +II++ +LK Sbjct: 6 RIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYILK 63 >gi|73541020|ref|YP_295540.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha JMP134] gi|72118433|gb|AAZ60696.1| transcriptional regulator, XRE family with shikimate kinase activity [Ralstonia eutropha JMP134] Length = 309 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R +++K++ ++ +++ LETG ++ + +A LD PL +L Sbjct: 29 LGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVARALDVPLPVVL 88 >gi|77412137|ref|ZP_00788460.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161797|gb|EAO72785.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 197 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|313625620|gb|EFR95300.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL J1-023] Length = 111 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + + + IS E G N D + LA + L Sbjct: 5 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RRK + I + IRK+ +TQ E G + IS++ETG T Sbjct: 79 RRKYKDVQTKKIIDP--HAIGARLKAIRKDEGMTQGEFGALVGLTHTGISKIETGHRTPE 136 Query: 63 IDNMIILAHTLDTPL 77 I + + +L L Sbjct: 137 IKTALKIKRSLGKTL 151 >gi|302670016|ref|YP_003829976.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394489|gb|ADL33394.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 210 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + LTQ+++ G +S+ E G+S +I + LA+ +T + LL Sbjct: 7 NLKKYRIQKDLTQEDVAEFLGITAQSVSKWERGESYPDITLLPALANIFETSVDLLL 63 >gi|291525631|emb|CBK91218.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 72 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|302865151|ref|YP_003833788.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302568010|gb|ADL44212.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] Length = 213 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R T +E+ G + ++SE+E G+ + + + + L L Sbjct: 5 RRVIGGVLRRTRLRQGRTLREVALAAGVSLPYLSEVERGRKEASSEVLAAICRALGIHLA 64 Query: 79 KLLK 82 LL+ Sbjct: 65 DLLE 68 >gi|238020232|ref|ZP_04600658.1| hypothetical protein GCWU000324_00107 [Kingella oralis ATCC 51147] gi|237868626|gb|EEP69630.1| hypothetical protein GCWU000324_00107 [Kingella oralis ATCC 51147] Length = 152 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ +Q+ + + + + +++E G+ + +D + +A L + LL Sbjct: 23 EKIRKIRELKNFSQENMAEQLQMSVNGYAKIERGEVGLQMDKLEKIADVLGMDVVDLL 80 >gi|229020239|ref|ZP_04177011.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1273] gi|229026464|ref|ZP_04182821.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1272] gi|228734927|gb|EEL85565.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1272] gi|228741079|gb|EEL91305.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1273] Length = 75 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN +R E + +Q ++ N+ G ++ I+ +E + ++ +AH L ++ + Sbjct: 9 NNLVVLRAEKRWSQTDLANKAGVSRQTIASIEANRYNPSLILAFEIAHILGKEFHEVFQ 67 >gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] Length = 339 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + +R+ ++QK+I ++ G +S+ E S + + +A + Sbjct: 2 KTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGSLPEMTMLPDIASLFGIQIDD 61 Query: 80 LLK 82 L + Sbjct: 62 LFE 64 >gi|197106560|ref|YP_002131937.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479980|gb|ACG79508.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 108 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKS 59 MP R +P + I R + R+ A +TQ E+ + G +++S++E+G Sbjct: 1 MP-RPATDPAKAAQIKALRQQAGRWLKAAREAAGMTQAELAEKVGLRYYTFVSQVESGLG 59 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + I+ A L + + Sbjct: 60 RLPIETQAAWATALGLDPGEFAR 82 >gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf] gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf] gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 220 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 29/51 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + LTQK++ + G A+S+I+E+E+G+ IN M ++ L Sbjct: 7 KIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGK 57 >gi|241662308|ref|YP_002980668.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240864335|gb|ACS61996.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 101 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R R + Q+ + + +G +S + ++E G+ + ++ +A L L+ Sbjct: 25 FGASVREERTSQGIAQETLAHLSGIERSHMGKIERGEHVPTLPLILKIARALKCSSAHLM 84 >gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51] gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI ++RK +Q+E+ + ++ IS+ E+ + +I+ ++ LA Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI ++RK +Q+E+ + ++ IS+ E+ + +I+ ++ LA Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|23014107|ref|ZP_00053943.1| COG3800: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 35/68 (51%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ +++ R +R+ KL+Q + + S+++++E + + + ++ +A LD Sbjct: 2 VMNKKLFLGYKLRRLREGKKLSQAALAALLEVSPSYLNQIENNQRPLTVPVLLRIAKVLD 61 Query: 75 TPLWKLLK 82 L L++ Sbjct: 62 VDLATLVE 69 >gi|15595422|ref|NP_248916.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099214|ref|ZP_01363132.1| hypothetical protein PaerPA_01000225 [Pseudomonas aeruginosa PACS2] gi|116053938|ref|YP_788376.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218888966|ref|YP_002437830.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254243326|ref|ZP_04936648.1| hypothetical protein PA2G_04136 [Pseudomonas aeruginosa 2192] gi|9946062|gb|AAG03614.1|AE004460_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115589159|gb|ABJ15174.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126196704|gb|EAZ60767.1| hypothetical protein PA2G_04136 [Pseudomonas aeruginosa 2192] gi|218769189|emb|CAW24949.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 179 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + +TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60 >gi|329116090|ref|ZP_08244807.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906495|gb|EGE53409.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 284 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLWK 79 I N + +RK TQ E+ F++ + IS E G+ + + + ++ L Sbjct: 7 ILGENLKKLRKLFGHTQDELAEILHFSKGNVISYYEKGERYPDQETLEKISDYFHISLDD 66 Query: 80 LL 81 LL Sbjct: 67 LL 68 >gi|326795756|ref|YP_004313576.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] gi|326546520|gb|ADZ91740.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] Length = 203 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P + D E + + IR T +E+ RTG A+S +S++E + + Sbjct: 5 PSLETATSAEPDK-FVEPLELGKRVKEIRLTKGWTLEEVSQRTGIARSTLSKIENDQVSP 63 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + L L L +L Sbjct: 64 SFTIVQKLIKGLGMDLPQLF 83 >gi|308274963|emb|CBX31562.1| hypothetical protein N47_E50740 [uncultured Desulfobacterium sp.] Length = 117 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLD 74 F R A +TQ E+ R G QS I+ LE +GK + ++ + A+ L Sbjct: 33 QFLKARSAAGITQAEVAERIGTTQSVIARLESGSGKHSPSLATLQKYANALG 84 >gi|297571861|ref|YP_003697635.1| XRE family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932208|gb|ADH93016.1| transcriptional regulator, XRE family [Arcanobacterium haemolyticum DSM 20595] Length = 109 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR+E ++ + + + F+Q+ +S +E+GK +D +++L+ L TPL + Sbjct: 7 GTRIREIREEQGMSARALAEKADGVFSQATLSRIESGKREPKLDELLVLSWLLSTPLDE 65 >gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20] Length = 166 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + I + RK+ KLTQ + + IS+ E G + + NMI +A LD Sbjct: 2 VEMKETILAMKLKEYRKKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELD 61 Query: 75 TPLWKLL 81 L LL Sbjct: 62 ISLETLL 68 >gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] Length = 65 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LTQ+++ G + I +E GK ++ +A + + Sbjct: 3 NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFKVKIEDIF 60 >gi|227534620|ref|ZP_03964669.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187721|gb|EEI67788.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 277 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +RK+ K+TQ ++ TG AQ+ IS E ++ +++I A L L Sbjct: 8 ILGPVIKELRKQKKMTQADLSRITGIAQNTISNHENQNRALDENSIIKYAKALGVTPQAL 67 >gi|261344646|ref|ZP_05972290.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567562|gb|EFB73097.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R+ LT E+ R +Q IS E G + I D ++IL + L+ + + Sbjct: 12 GKMLKSYRRRTGLTGTELAKRINVSQQQISRYENGVNNITFDKLMILFNALEMNRYDI 69 >gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 404 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ G + +S+ E+G S +I+ + +LA + + KLL Sbjct: 6 GKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64 >gi|213019906|ref|ZP_03335697.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994507|gb|EEB55164.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 314 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 16 RYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDII 75 Query: 79 KLL 81 L+ Sbjct: 76 DLI 78 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQK++ + + IS E G+ I ++ + +A TL + LL+ Sbjct: 173 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 232 >gi|160914966|ref|ZP_02077180.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] gi|158433506|gb|EDP11795.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] Length = 144 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ RK L+Q+ + + G ++ IS+ ET ++ +I LA L +L+ Sbjct: 4 GNHLMMARKRKGLSQESVAEKLGVSRQTISKWETCETLPDICQAKTLATIYGISLDELIT 63 >gi|114570052|ref|YP_756732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340514|gb|ABI65794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 136 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R E L+Q+ + R G + I + E G I+ + +LA+ L P Sbjct: 18 VGARLRVGRIEFCLSQEALGERFGVSFHQIQKYERGAYRISASRLFVLANALLVP 72 >gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2] gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2] Length = 118 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +++R+ L+ +E+ + GFA+S + E+GK +++ ++ LA + + Sbjct: 2 KQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVDS 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 323 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK A+ +Q+E+ + G ++ IS+ E +S +++ ++ L+ Sbjct: 1 MILADKIIYLRKRAEWSQEELAEQMGVSRQSISKWEGAQSIPDMNRLLKLSQIFGVSTDF 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|313207290|ref|YP_004046467.1| transcriptional regulator, xre family [Riemerella anatipestifer DSM 15868] gi|312446606|gb|ADQ82961.1| transcriptional regulator, XRE family [Riemerella anatipestifer DSM 15868] gi|315023460|gb|EFT36467.1| XRE family transcriptional regulator [Riemerella anatipestifer RA-YM] gi|325335235|gb|ADZ11509.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 101 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 E R++ +TQ+E+ + G +S+IS +E S I + ++ + T Sbjct: 35 ESFQLGVLLEEARRKLGMTQEELAEKCGTNKSYISRIENNASDIRLSTLMKIIQT 89 >gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ ++Q + G ++S E GK+ N N+ ILA Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGV 56 >gi|294789944|ref|ZP_06755165.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294482125|gb|EFG29831.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 58 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R AK+TQ+ + G ++ +S +E G++ + ++++ +A + Sbjct: 4 LGEWVKEARTSAKMTQESLGFELGMTKANVSNMEKGRTNPSFEHILKIAQITNME 58 >gi|282849276|ref|ZP_06258661.1| DNA-binding protein [Veillonella parvula ATCC 17745] gi|282580980|gb|EFB86378.1| DNA-binding protein [Veillonella parvula ATCC 17745] Length = 290 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R ++ L+Q ++ ++ I++ E+G +I N+ L+ + + +LL Sbjct: 3 FNEKLREYRTQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDELL 62 >gi|219668894|ref|YP_002459329.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539154|gb|ACL20893.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 83 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLWK 79 N RK +TQ ++ + G ++S++ E+E +T++++ + +A+ L K Sbjct: 18 LGLNIAYYRKREGMTQDQLAEKAGMSRSYLGEIEAPNMITTMSLEVLFNIANVLRIKPSK 77 Query: 80 LLK 82 LL+ Sbjct: 78 LLE 80 >gi|119962680|ref|YP_946768.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119949539|gb|ABM08450.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 213 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + +T E TG + S +S LE+G+ ++ ++ +A PL +L+ Sbjct: 32 VGPRLRAMRTQRNVTLAEASEATGISVSTLSRLESGQRKPTLELLLPIARLHQVPLEELI 91 >gi|78061653|ref|YP_371561.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77969538|gb|ABB10917.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 185 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82 R++RK K+T ++ R G + ++S++E G S + ++ + L P + L K Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEVLGVPTTYFYSLSK 73 Query: 83 P 83 P Sbjct: 74 P 74 >gi|332202039|gb|EGJ16108.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 287 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|312888747|ref|ZP_07748311.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298747|gb|EFQ75852.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 101 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 E R E LTQ+E+ + G +S+IS++E + + + T Sbjct: 35 ENFKIGAMIHEARLEKGLTQEELAEKVGTTKSYISKIENNIKEVRFSTLKKIVET 89 >gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 413 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +R+E L+Q+ + G ++ +S+ E+ + +++N + L+ L + Sbjct: 1 MTLGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSALPDVNNCVALSRAFGITLAQ 60 >gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 122 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+ L Q+E+ G ++ +S E + + + + LA + L+ Sbjct: 3 YGSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDYLV 62 >gi|303267506|ref|ZP_07353355.1| hypothetical protein CGSSpBS457_08189 [Streptococcus pneumoniae BS457] gi|303269644|ref|ZP_07355403.1| hypothetical protein CGSSpBS458_08119 [Streptococcus pneumoniae BS458] gi|302640846|gb|EFL71234.1| hypothetical protein CGSSpBS458_08119 [Streptococcus pneumoniae BS458] gi|302642943|gb|EFL73241.1| hypothetical protein CGSSpBS457_08189 [Streptococcus pneumoniae BS457] Length = 179 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|296453372|ref|YP_003660515.1| XRE family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182803|gb|ADG99684.1| transcriptional regulator, XRE family [Bifidobacterium longum subsp. longum JDM301] Length = 92 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK------ST 60 S R N + +R E LTQ+ + G ++ +E G+ + Sbjct: 2 AVKDDSKEWARYAKELGVNLQRLRVERGLTQERVAYDAGLSRYQYQRMEWGRIGKDTPAN 61 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + ++ +A L L +LL Sbjct: 62 PTLKTIMAVAQVLGVTLDELL 82 >gi|295101224|emb|CBK98769.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Faecalibacterium prausnitzii L2-6] Length = 272 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LTQ ++ + +S+ ETGK + M+ L + L + +LL Sbjct: 7 GKFIAGCRKEKGLTQAQLAEKLNITDRAVSKWETGKCMPDASIMLELCNILGVTVNELL 65 >gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] Length = 165 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 3 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62 >gi|228964769|ref|ZP_04125876.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228795019|gb|EEM42518.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 167 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ ++ +S +S++E GK+T ++ + +A L LL Sbjct: 4 LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|225853739|ref|YP_002735251.1| helix-turn-helix domain protein [Streptococcus pneumoniae JJA] gi|225722886|gb|ACO18739.1| helix-turn-helix domain protein [Streptococcus pneumoniae JJA] Length = 287 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 331 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK +Q+E+ ++ ++ +S+ E+G + +D +++L+ LL Sbjct: 3 LAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVPELDKILLLSTLFGVSTDTLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RKE KLTQK+I + G + S E G + + + L L+ P Sbjct: 5 EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVP 57 >gi|313898339|ref|ZP_07831876.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956721|gb|EFR38352.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 401 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F +RK+ TQ ++ + +S ET + +I + L+ L Sbjct: 3 KEQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGISCD 62 Query: 79 KLL 81 +LL Sbjct: 63 ELL 65 >gi|298254526|ref|ZP_06978112.1| hypothetical protein SpneCM_02795 [Streptococcus pneumoniae str. Canada MDR_19A] Length = 304 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 168 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK LTQ+++ + +S E G + +ID +I LA + + +L+ Sbjct: 7 GEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNNMPDIDILIELADFYEVDIRELI 65 >gi|251779491|ref|ZP_04822411.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083806|gb|EES49696.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 164 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L + N ++ RK LTQKE + ++ I + E+GK I + +A + + Sbjct: 4 SLTNTINIGKNIKHYRKLEGLTQKEFGAKIHKSEISIRKYESGKGNIPMSTFFDIARSFN 63 Query: 75 TPLWKLLK 82 + LL+ Sbjct: 64 INIVDLLR 71 >gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07] gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07] Length = 403 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ G + +S+ E+G S +I+ + +LA + + KLL Sbjct: 6 GKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64 >gi|166032973|ref|ZP_02235802.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC 27755] gi|166027330|gb|EDR46087.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC 27755] Length = 190 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IR+E K TQ+++ ++ ++ + E G ++ LA L L +L+ Sbjct: 46 NIKKIREEKKYTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLAMELGVTLDELI 102 >gi|157693789|ref|YP_001488251.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682547|gb|ABV63691.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 134 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R+ K++ ++ +G + + IS +E GK + LAH L P L Sbjct: 4 FGEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKRGVPKPLTIKKLAHALKVPYEDL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|40445337|ref|NP_954797.1| hypothetical protein pKB1_p057 [Gordonia westfalica] gi|40217367|emb|CAE09118.1| hypothetical protein [Gordonia westfalica] Length = 124 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 2 PRRKRDEPHLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 P R AI + R E K++Q+ + G +++++ +E G Sbjct: 37 PERPESMSSDPSAISVDETAVMTAVGAAIIARRTELKISQQALARTVGTSRTFLRGIEAG 96 Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82 + + + +A L T L+ Sbjct: 97 ERAPTVVTLTRIARALHTTPSALIT 121 >gi|22537855|ref|NP_688706.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76787796|ref|YP_330325.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76798410|ref|ZP_00780651.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77405968|ref|ZP_00783047.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77409450|ref|ZP_00786144.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|22534750|gb|AAN00579.1|AE014269_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76562853|gb|ABA45437.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76586242|gb|EAO62759.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77171942|gb|EAO75117.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77175420|gb|EAO78210.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 197 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|332826638|gb|EGJ99467.1| hypothetical protein HMPREF9455_00500 [Dysgonomonas gadei ATCC BAA-286] Length = 72 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ L+ ++ ++ + + +E G++ + + + LD L ++ Sbjct: 10 VGLKIREIRESRDLSMMDLADKLDIEYNNLIRIEKGRTNPTLGTLYKICQALDVKLVDIV 69 >gi|289433492|ref|YP_003463364.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169736|emb|CBH26272.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 111 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + R+E L Q+ + R + IS E G N D + LA + L Sbjct: 5 KFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKRLDD 64 Query: 80 LL 81 Sbjct: 65 FF 66 >gi|281490797|ref|YP_003352777.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374555|gb|ADA64075.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 68 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R EA+++Q ++ ++ G + I +E+GK ++ I + L L + Sbjct: 4 KKMKMARIEAEMSQADLADKVGATRQTIGLIESGKFNPSLRLCIDICRVLKKTLNDIF 61 >gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 81 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R R A LTQ E+ G ++ + +E G ++ + +A L+ + +L Sbjct: 3 SSLRKARLRAGLTQSEVARLVGLTRASYTNIERGHKNPSVVTALRIAQVLNRSVEELF 60 >gi|255316687|ref|ZP_05358270.1| hypothetical protein CdifQCD-7_20172 [Clostridium difficile QCD-76w55] Length = 114 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLD 74 +F F+ +RKE LTQ+E+ + T F +S IS+ E K + + A+ Sbjct: 3 LFGERFKGLRKEMGLTQEELVEKFNKLNDTHFNKSTISQYENNKRKPELSILYKWANFYG 62 Query: 75 TPLWKLL 81 L +L Sbjct: 63 VSLDFIL 69 >gi|213019781|ref|ZP_03335584.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994611|gb|EEB55256.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 302 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQK++ N+ G I E E G++ ++++ + +A L + LL Sbjct: 159 VGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEIAKVLSISIIDLL 218 Score = 42.7 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R E TQK++ + G I + E G I I + +A L + L+ Sbjct: 9 VGQKVKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEALSVNVKGLV 68 >gi|198244633|ref|YP_002215542.1| XRE family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939149|gb|ACH76482.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 185 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 15 LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74 Query: 82 KP 83 P Sbjct: 75 SP 76 >gi|297195394|ref|ZP_06912792.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719236|gb|EDY63144.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 197 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 7 DEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 D D RE + R R+ LT + R+G + ++S++E ++ ++ + Sbjct: 2 DAKDAKDTKEREEPLRVGAAVRKRRRALGLTLAAVAARSGLSVPFLSQIENERAHPSMRS 61 Query: 66 MIILAHTLDTPLWKLL 81 + ++ LDT +LL Sbjct: 62 LQRVSDALDTSAERLL 77 >gi|194015481|ref|ZP_03054097.1| YvaO [Bacillus pumilus ATCC 7061] gi|194012885|gb|EDW22451.1| YvaO [Bacillus pumilus ATCC 7061] Length = 134 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R+ K++ ++ +G + + IS +E GK + LAH L P L Sbjct: 4 FGEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKRGVPKPLTIKKLAHALKVPYEDL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|239917249|ref|YP_002956807.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665] gi|281414274|ref|ZP_06246016.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665] gi|239838456|gb|ACS30253.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665] Length = 101 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R++R+ T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 5 RHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKEASSELLASICQALDIPLS 64 Query: 79 KLLK 82 LL+ Sbjct: 65 YLLR 68 >gi|168819389|ref|ZP_02831389.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343670|gb|EDZ30434.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085906|emb|CBY95680.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 178 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|169544294|ref|YP_001693069.1| XRE family transcriptional regulator [Yersinia enterocolitica] gi|168218478|emb|CAP20221.1| transcriptional regulator, XRE family [Yersinia enterocolitica] Length = 83 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ R A +TQ+ + G A+S +S ETG D M + A LD P Sbjct: 5 RLKSARLRAGMTQERLGVLAGIDESTARSRVSHYETGTHKPTYDTMCLFAKVLDVP 60 >gi|168260202|ref|ZP_02682175.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350640|gb|EDZ37271.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|326623288|gb|EGE29633.1| transcriptional regulator, XRE family [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 178 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + + + +G +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|160893918|ref|ZP_02074697.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50] gi|156864296|gb|EDO57727.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50] Length = 65 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 28/51 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 M VNN + IR+ + Q ++ TGF IS +E GK T + + M+ ++ Sbjct: 1 MAVVNNLKEIRESRGIIQDDLAAATGFCTRTISRIERGKCTPSAEFMLRIS 51 >gi|146341868|ref|YP_001206916.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194674|emb|CAL78699.1| putative transcriptional regulatory protein, XRE family [Bradyrhizobium sp. ORS278] Length = 271 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ L+Q ++ + +S +ETG++ + D ++ LA LD PL + Sbjct: 17 VGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPLRE 74 >gi|16078945|ref|NP_389766.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309780|ref|ZP_03591627.1| hypothetical protein Bsubs1_10396 [Bacillus subtilis subsp. subtilis str. 168] gi|221314102|ref|ZP_03595907.1| hypothetical protein BsubsN3_10327 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319024|ref|ZP_03600318.1| hypothetical protein BsubsJ_10243 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323298|ref|ZP_03604592.1| hypothetical protein BsubsS_10362 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342368|sp|O34647|YOBD_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yobD gi|2619003|gb|AAB84427.1| transcription regulator [Bacillus subtilis] gi|2634278|emb|CAB13777.1| transcriptional regulator (phage-related, Xre family) [Bacillus subtilis subsp. subtilis str. 168] Length = 112 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R +RK KLT +++ + G A+S E +D ++ILA D + + Sbjct: 1 MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYI 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|327404439|ref|YP_004345277.1| XRE family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319947|gb|AEA44439.1| transcriptional regulator, XRE family [Fluviicola taffensis DSM 16823] Length = 347 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +N RK L +E+ N G QS IS+ E GK + +I L++ L L +L Sbjct: 5 LQNARKAKGLLSRELANLLGVDQSLISKFENGKRLPSEKQLIELSNVLSINLDEL 59 >gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator [Clostridium botulinum H04402 065] Length = 370 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + ++A + + Sbjct: 2 EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIATLFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|302551760|ref|ZP_07304102.1| XRE family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302469378|gb|EFL32471.1| XRE family transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 402 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK +Q + R G + S +S++E G + LAH + L +LL Sbjct: 23 GANVAVCRKARGFSQVALARRAGVSVSLLSKIEVGDRALTQGIAAALAHAMGLTLDELL 81 >gi|300174082|ref|YP_003773248.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888461|emb|CBL92429.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811] Length = 204 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N+ +N+R + LTQ ++ + IS E K+ +I N+I L+ L Sbjct: 1 MTFGNHLKNVRLQKNLTQDQVAKDFFVTRQTISSWENEKTYPDITNLINLSDYYHISLDT 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|300724905|ref|YP_003714230.1| hypothetical protein XNC1_4123 [Xenorhabdus nematophila ATCC 19061] gi|297631447|emb|CBJ92148.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061] Length = 93 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N ++R EAKLTQ+++ +R G +S IS LE GKS + ++ A L Sbjct: 32 NTLLSMRTEAKLTQQQVADRMGTKESNISRLEKGKSNPTLSTLVNYAKACGFQL 85 >gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 104 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 IR++ KL+Q++ G + +S E G S NI+ +I+++ P+ ++LK Sbjct: 12 AKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPVDEMLK 71 >gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ R+ RK+ L+Q+E+ R G ++ ++ +E K + LA LDT + +L P Sbjct: 3 NSIRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDPTLALAFHLARELDTRVDELFTP 62 >gi|212712673|ref|ZP_03320801.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] gi|212684589|gb|EEB44117.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ R+ LT E+ R +Q IS E G + I+ D +IIL + L+ Sbjct: 12 GRMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNNISFDKLIILFNALEMS 65 >gi|199597846|ref|ZP_03211272.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|258509577|ref|YP_003172328.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591282|gb|EDY99362.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|257149504|emb|CAR88477.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259650844|dbj|BAI43006.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 70 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R + LTQ+++ +R ++ +S LE G+ ++ L+H + P+ ++ Sbjct: 3 NRIEALRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60 >gi|169333754|ref|ZP_02860947.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis DSM 17244] gi|169259603|gb|EDS73569.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis DSM 17244] Length = 118 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RK+ LTQ+++ + S +S +E G ++ ++ LA+ L+ Sbjct: 8 LGKRLKEQRKKQGLTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNLANILNIS 62 >gi|83945188|ref|ZP_00957537.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] gi|83851358|gb|EAP89214.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E++ R +RKE TQ + + S+++ LE + + ++ LA D Sbjct: 6 EKLFAGARLRRLRKELGQTQAQFAESLNVSPSYLNLLERNQRPVTARVLLSLAEAFDV 63 >gi|119773818|ref|YP_926558.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119766318|gb|ABL98888.1| transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 504 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63 +++R+ RN+RK LT +++ +R + S++S +E GK + Sbjct: 3 SEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVPSA 62 Query: 64 DNMIILAHTLDTPL 77 + ++A + Sbjct: 63 AMLEVIAKVFEKSP 76 >gi|332796468|ref|YP_004457968.1| XRE family transcriptional regulator [Acidianus hospitalis W1] gi|332694203|gb|AEE93670.1| XRE family transcriptional regulator [Acidianus hospitalis W1] Length = 190 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + +R+ A LTQ E+ R G +QS+I+++E GK + + L Sbjct: 5 FSELKKLRQIAGLTQAELAKRVGVSQSFIAKIENGKIDPKFSIIKKIYDEL 55 >gi|330944238|gb|EGH46330.1| helix-turn-helix domain protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R L+QK++ + G +Q I+ LE + + + + L LD Sbjct: 53 AETLRTARLRKGLSQKQLASLIGTSQPHIANLEKSGNDVMLSTAVKLCAALDIE 106 >gi|307707806|ref|ZP_07644283.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] gi|307616066|gb|EFN95262.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] Length = 287 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGDV-LSRTSLSKIESGKATPKYENMDFLLRQMNMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 509 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|255528351|ref|ZP_05395157.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185570|ref|ZP_06853979.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7] gi|255507961|gb|EET84395.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049698|gb|EFG89123.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7] Length = 434 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RK+ +T K++ IS +E+GKS ++D + LA+ L+T + Sbjct: 2 EILSLGEKIKRRRKDLNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANALNTSI 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 503 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+ +T G A S +S +E GK + + LA L +LL Sbjct: 35 LGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENGKREPKLSMLRALARELGVSSDELL 94 Query: 82 K 82 + Sbjct: 95 R 95 >gi|229551472|ref|ZP_04440197.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540781|ref|YP_003175280.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229315155|gb|EEN81128.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152457|emb|CAR91429.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 70 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R + LTQ+++ +R ++ +S LE G+ ++ L+H + P+ ++ Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60 >gi|312977847|ref|ZP_07789593.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895154|gb|EFQ44222.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 115 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ + NIR+ ++Q E+ + G ++ ++++E G ++ D + +A L Sbjct: 3 EQELLAKKIVNIRESKNMSQLELSKKAGIERTALNKIEKGTRKVSSDELRRIALALHQSS 62 Query: 78 WKLL 81 LL Sbjct: 63 DNLL 66 >gi|307709755|ref|ZP_07646206.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619457|gb|EFN98582.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 116 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 13 QKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 70 >gi|294664260|ref|ZP_06729632.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605970|gb|EFF49249.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 113 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTL 73 R+IF N R+ R++A+LTQ+ + G A++ I+ E G + ++ LA L Sbjct: 6 ARLIFANRLRHARQKAELTQEALGVAAGLAPEVARTRINRYEKGVNECDLRTAKRLADAL 65 Query: 74 DTPL 77 PL Sbjct: 66 GMPL 69 >gi|257874839|ref|ZP_05654492.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809005|gb|EEV37825.1| predicted protein [Enterococcus casseliflavus EC20] Length = 70 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N + RK KLTQ E+ NR G ++ I LE G T ++ +A L+ L ++ Sbjct: 1 MIINKVQFFRKNKKLTQAELANRVGVSRKTIVSLEKGSYTPSLLLAFQIAKALNMDLTEI 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619] gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619] Length = 259 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R A LTQ+++ + G AQ+ IS+LE+GK+ + ++ +A T Sbjct: 5 ERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQRS-SYLMAIASTCGVS 56 >gi|194442417|ref|YP_002040915.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401080|gb|ACF61302.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 200 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 ++ Sbjct: 80 VV 81 >gi|166032258|ref|ZP_02235087.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC 27755] gi|166027981|gb|EDR46738.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC 27755] Length = 213 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RN R + +TQKE+ ++ G +S I E G + ++ +A+ L + L P Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70 >gi|254254750|ref|ZP_04948067.1| DNA-binding protein [Burkholderia dolosa AUO158] gi|124899395|gb|EAY71238.1| DNA-binding protein [Burkholderia dolosa AUO158] Length = 201 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R+ K T E G ++ ++S++E G ++ ++ ++ +AH L Sbjct: 25 LGGKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 78 >gi|331268935|ref|YP_004395427.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum BKT015925] gi|329125485|gb|AEB75430.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum BKT015925] Length = 432 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ IS +E+GKS ++D + LA++L+ + Sbjct: 2 EILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNISI 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 166 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 4 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 63 >gi|296330344|ref|ZP_06872825.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676051|ref|YP_003867723.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152612|gb|EFG93480.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414295|gb|ADM39414.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 152 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + R RK + ++ +G ++S++S++E G ++ + ++ TL+ L + Sbjct: 1 MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKISATLEVELTE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|282866082|ref|ZP_06275130.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559121|gb|EFB64675.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 206 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ LT + R + + +S LETG+ ++ ++ LA T + +LL Sbjct: 18 VAPRLRDLRRNRGLTLETAARRAELSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL 77 >gi|257453722|ref|ZP_05619008.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus SK60] gi|257448905|gb|EEV23862.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus SK60] Length = 106 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 IF F+ RK KLTQ+++ G A + I+ E G ++ + +A LD P Sbjct: 6 IFTTRFKQARKAKKLTQEQLGIAIGLDEFVASTRINRYEKGIHLPDLQTLARIAEILDVP 65 Query: 77 L 77 Sbjct: 66 P 66 >gi|253681993|ref|ZP_04862790.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] gi|253561705|gb|EES91157.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] Length = 432 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ IS +E+GKS ++D + LA++L+ + Sbjct: 2 EILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNISI 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|227511733|ref|ZP_03941782.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085053|gb|EEI20365.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 241 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N R +RK+ L+Q + +R G + + +SE E+GK T + + +A + + Sbjct: 1 MFAENLRYLRKKHHLSQTTLAHRLGRKSVASVSEWESGKYTPQLAIIEKIATLFNVDVAD 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] Length = 283 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +A TQKE+ + G + IS+ E G S +I + LA + +++ Sbjct: 20 GQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLPRLAEVFHVSVGEII 78 >gi|154483623|ref|ZP_02026071.1| hypothetical protein EUBVEN_01327 [Eubacterium ventriosum ATCC 27560] gi|149735533|gb|EDM51419.1| hypothetical protein EUBVEN_01327 [Eubacterium ventriosum ATCC 27560] Length = 115 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 29/72 (40%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + + ++ N R R LTQ+ + S IS +E S ++++ Sbjct: 2 KQKDEVAKMKEINYKAISNKIRRKRVSMGLTQEYLATAADVNVSHISNIENCHSKVSLNT 61 Query: 66 MIILAHTLDTPL 77 ++ + ++T L Sbjct: 62 LVYICKAMNTTL 73 >gi|59801268|ref|YP_207980.1| hypothetical protein NGO0867 [Neisseria gonorrhoeae FA 1090] gi|194098501|ref|YP_002001563.1| hypothetical protein NGK_0938 [Neisseria gonorrhoeae NCCP11945] gi|254493679|ref|ZP_05106850.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594735|ref|ZP_06128902.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268596937|ref|ZP_06131104.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598888|ref|ZP_06133055.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601243|ref|ZP_06135410.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603564|ref|ZP_06137731.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682044|ref|ZP_06148906.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684254|ref|ZP_06151116.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686512|ref|ZP_06153374.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043928|ref|ZP_06569644.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399131|ref|ZP_06643296.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] gi|59718163|gb|AAW89568.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193933791|gb|ACF29615.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512719|gb|EEH62064.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548124|gb|EEZ43542.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550725|gb|EEZ45744.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268583019|gb|EEZ47695.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585374|gb|EEZ50050.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587695|gb|EEZ52371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622328|gb|EEZ54728.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624538|gb|EEZ56938.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626796|gb|EEZ59196.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012391|gb|EFE04380.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610545|gb|EFF39655.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] Length = 129 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ + TQ+E+ + + + S++E GKS IN+D + +A + + +LL Sbjct: 6 KIRTLREVNQWTQEEMAEKLEMSVNGYSKIERGKSGINLDKLRQIAQIFNIDVVELL 62 >gi|116618839|ref|YP_819210.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097686|gb|ABJ62837.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 129 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLD 74 + + F ++IR++ T ++ + F+ +++S++E G ++ + +A L Sbjct: 1 MVTKEQFGQKIKHIREKKHYTVRQAALQGNFSSAYLSQIENGNKNIPKVETLYRIAKGLR 60 Query: 75 TPLWKLL 81 ++L Sbjct: 61 ISKDEIL 67 >gi|330718084|ref|ZP_08312684.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 67 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK K +Q E+ G + I+ +E K +++ LA L + +L Sbjct: 3 NNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYDPSLELAFKLASILLVRVDELF 60 >gi|304439390|ref|ZP_07399302.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372172|gb|EFM25766.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 67 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R ++Q+++ N G + I LE G+ ++ +A + ++ Sbjct: 1 MISNRIKEFRARNSMSQEDLANAVGVRRETIGNLENGRYNPSLVLAWNIAKVFGVTIEEI 60 Query: 81 LK 82 Sbjct: 61 FT 62 >gi|302552372|ref|ZP_07304714.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302469990|gb|EFL33083.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 195 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGDYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL J2-003] Length = 158 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ +Q ++ + GF++ ++ E G + ++ +A + L Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|229588939|ref|YP_002871058.1| putative DNA-binding regulatory protein [Pseudomonas fluorescens SBW25] gi|229360805|emb|CAY47663.1| putative DNA-binding regulatory protein [Pseudomonas fluorescens SBW25] Length = 175 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + ++G +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF 60 >gi|227357903|ref|ZP_03842249.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC 29906] gi|227161876|gb|EEI46900.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC 29906] Length = 101 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + +RK + L+ E+ G +Q +S +E G+ ++ ++ + D P+ Sbjct: 5 KILGREIKFLRKRSLLSGCELAKAFGISQQHLSRIERGEVQWSVSFLLRVCAFFDIPMIH 64 Query: 80 LLK 82 +K Sbjct: 65 FIK 67 >gi|281420727|ref|ZP_06251726.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] gi|281405019|gb|EFB35699.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] Length = 104 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+E LTQK++ G QS++S++ET + ++ + + + + + ++ Sbjct: 18 RLRTKREERGLTQKQLAGMLGLPQSYVSKIETCERRMDFIELRSICNLMGISVVDFMQ 75 >gi|225573421|ref|ZP_03782176.1| hypothetical protein RUMHYD_01613 [Blautia hydrogenotrophica DSM 10507] gi|225039231|gb|EEG49477.1| hypothetical protein RUMHYD_01613 [Blautia hydrogenotrophica DSM 10507] Length = 65 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q E+ NR G + I +E G ++ I + LD L L Sbjct: 5 RMKLARMEKDLSQIELANRIGVTRQTIGMIEAGDYNPSLKLCIAICRELDKTLDDLF 61 >gi|221215562|ref|ZP_03588525.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221164550|gb|EED97033.1| DNA-binding protein [Burkholderia multivorans CGD1] Length = 342 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EAK T E+ + ++S++E + I+I +++ +A L+ PL L+ Sbjct: 73 GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 131 >gi|188587111|ref|YP_001918656.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351798|gb|ACB86068.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 118 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R +R+ A TQ+EI + ++ I+ +E G I+ N++ +A L ++ Sbjct: 4 ILGEQIRVLRESAGKTQEEIAFKMNCSRQKIARIEKGLVDISYSNILDIARILQISPREI 63 >gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 158 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ +Q ++ + GF++ ++ E G + ++ +A + L Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|146300326|ref|YP_001194917.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154744|gb|ABQ05598.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 131 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N IR+ + Q+ + + G Q IS +E + T++ +I +A LD Sbjct: 11 GRNISRIRELKDMKQEALADALGITQQTISNIENSE-TVDEQRLIEIAKALDVS 63 >gi|28210273|ref|NP_781217.1| transcriptional regulator [Clostridium tetani E88] gi|28202709|gb|AAO35154.1| transcriptional regulator [Clostridium tetani E88] Length = 436 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ IS +E+GKS ++D + L+ LD + Sbjct: 4 EILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLSEALDVSI 62 Query: 78 WKLLK 82 L++ Sbjct: 63 EYLME 67 >gi|33594034|ref|NP_881678.1| MerR family transcriptional regulator [Bordetella pertussis Tohama I] gi|33564108|emb|CAE43378.1| probable MerR-family transcriptional regulator [Bordetella pertussis Tohama I] gi|332383451|gb|AEE68298.1| MerR family transcriptional regulator [Bordetella pertussis CS] Length = 279 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 8 EPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 P D +R FR R++ ++ +E + TG S+IS E + Sbjct: 82 APAPQDPARPKRSANTQQLGRQFRVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAV 141 Query: 64 DNMIILAHTLDTPLWKLLKP 83 ++ LA T + +L P Sbjct: 142 ASLQRLAACYGTTVTELSAP 161 >gi|332668877|ref|YP_004451885.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337915|gb|AEE44498.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 74 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R A ++TQ E+ R G + + +E G+ + ++ +A L PL ++ + Sbjct: 9 NRIRALRFAADEMTQAELARRIGVTRQTVIAIEQGRYSPTLEMAFQIARVLGVPLDEVFQ 68 >gi|323356755|ref|YP_004223151.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273126|dbj|BAJ73271.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 102 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R++R++ T +++ +R A ++SE+E G+ + + + +A LD P+ Sbjct: 5 RQEIGEVLRDLRQQKGRTLRQVASRASVALGYLSEVERGQKEASSEILASVAEALDVPIS 64 Query: 79 KLLK 82 +++ Sbjct: 65 SIMR 68 >gi|303229753|ref|ZP_07316533.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302515513|gb|EFL57475.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 100 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPL 77 R+ +TQ+E+ RTG QS+IS LE G I + + + D PL Sbjct: 27 RRHYHITQQELAKRTGLLQSYISGLEKGNIDPRISTLCRIVNGFDNMPL 75 >gi|284047025|ref|YP_003397365.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951246|gb|ADB53990.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 284 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R R +++Q E+ R G Q +S +E G+S ++ LA +L+ L + Sbjct: 12 FASELRRWRNARRVSQLELALRAGTTQRHVSYIEQGRSRPGRTMVVRLAESLELSLRE 69 >gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 165 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 3 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62 >gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 74 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +F RK +LTQ ++ R G + + IS E G S + + +AH L + Sbjct: 5 QAKLFGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKV 64 Query: 78 WKLLK 82 LL Sbjct: 65 DWLLT 69 >gi|158423643|ref|YP_001524935.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158330532|dbj|BAF88017.1| helix-turn-helix XRE-family-like protein [Azorhizobium caulinodans ORS 571] Length = 217 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ KLT K++ RTG + S +S++E + ++ D ++ L + L + +L Sbjct: 15 LGECLKAARQARKLTLKQVAERTGLSLSTLSKVENHQMSLTYDKLLQLTNGLGIAIAELF 74 >gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +R+E K++Q+E + IS E K+ ++ ++ ++ PL +LK Sbjct: 4 GETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKNYPDLQTLVKISDESGVPLDSMLK 63 >gi|117623603|ref|YP_852516.1| putative regulator [Escherichia coli APEC O1] gi|115512727|gb|ABJ00802.1| putative regulator [Escherichia coli APEC O1] Length = 139 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ L+Q ++ G+ QS I E G + + + ++L L +LL Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 >gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp. X514] gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X514] gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 137 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+E L QK++ G S E GK +++ + L+ + + LL Sbjct: 10 FSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLL 69 >gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +R+ +Q ++ + I ++E+GK I ++ +A L L K+ Sbjct: 19 GLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNPTIFSLYEIAIALGVSLSKV 76 >gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 163 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK LTQ+++ + G IS+ ETG+ +I + ILA L + +LLK Sbjct: 7 GKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEMLGITVNELLK 66 >gi|254237537|ref|ZP_04930860.1| hypothetical protein PACG_03617 [Pseudomonas aeruginosa C3719] gi|313112202|ref|ZP_07797979.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|126169468|gb|EAZ54979.1| hypothetical protein PACG_03617 [Pseudomonas aeruginosa C3719] gi|310884481|gb|EFQ43075.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 179 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 34/57 (59%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + ++TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLETLADKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60 >gi|332638098|ref|ZP_08416961.1| hypothetical protein WcibK1_05343 [Weissella cibaria KACC 11862] Length = 112 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + R++ + TQ + ++ IS+ E G + +ID ++ +++ L Sbjct: 1 MILGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDS 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|332523522|ref|ZP_08399774.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314786|gb|EGJ27771.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 121 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLD 74 ++ F +N + +R E K+ Q E+ ++ G + S ISE E GK T D ++ +A Sbjct: 2 PTQKSYFPSNLKYLRLEKKMEQLELAHKIGRKSASTISEWENGKYTPKQDILLKVADLFQ 61 Query: 75 TPLWKLL 81 + L+ Sbjct: 62 VDINTLV 68 >gi|270299969|gb|ACZ68775.1| hypothetical protein SAP073A_008 [Staphylococcus aureus] Length = 72 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|229186773|ref|ZP_04313930.1| Transcription regulator [Bacillus cereus BGSC 6E1] gi|228596708|gb|EEK54371.1| Transcription regulator [Bacillus cereus BGSC 6E1] Length = 137 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK L+Q+++ ++ G + IS+ E K T +I+N+I+L+ ++ L L+K Sbjct: 13 RKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSEEMNISLDNLIK 65 >gi|281421595|ref|ZP_06252594.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] gi|281404350|gb|EFB35030.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella copri DSM 18205] Length = 128 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 24/47 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RK +TQ+++ + + A S I ++E+GK ++ + + L Sbjct: 73 RKALGITQQDLADMSEIAISTIKKIESGKGNPSLSTVEKIMDILGME 119 >gi|254381609|ref|ZP_04996973.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194340518|gb|EDX21484.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 231 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R L+++E+ + G ++I+ LE ++ I ++ +A L + Sbjct: 21 RTDLGRRIAARRTALGLSREELGRKCGADGNYIAYLEEHAASPAIGTLVRMADALGVTVD 80 Query: 79 KL 80 L Sbjct: 81 DL 82 >gi|168241225|ref|ZP_02666157.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462878|ref|ZP_02696809.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450536|ref|YP_002045707.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408840|gb|ACF69059.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633981|gb|EDX52333.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205339118|gb|EDZ25882.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 200 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 ++ Sbjct: 80 VV 81 >gi|115524479|ref|YP_781390.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518426|gb|ABJ06410.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 119 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R+ +LTQ E+ R G +++ ++ +E+G+ + + ++ LA L+ L Sbjct: 12 FGRLVASRRRALELTQAELAARVGMSRASVANIESGRQNVLLHHVYSLASALEFSKPADL 71 Query: 82 KP 83 P Sbjct: 72 LP 73 >gi|16765008|ref|NP_460623.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|168230089|ref|ZP_02655147.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168260130|ref|ZP_02682103.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194471773|ref|ZP_03077757.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197264385|ref|ZP_03164459.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204927706|ref|ZP_03218907.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|16420191|gb|AAL20582.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194458137|gb|EDX46976.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197242640|gb|EDY25260.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204323048|gb|EDZ08244.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205335305|gb|EDZ22069.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350683|gb|EDZ37314.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246856|emb|CBG24672.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993597|gb|ACY88482.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158192|emb|CBW17690.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912655|dbj|BAJ36629.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224291|gb|EFX49354.1| Putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129933|gb|ADX17363.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988551|gb|AEF07534.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 200 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 ++ Sbjct: 80 VV 81 >gi|56419029|ref|YP_146347.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378871|dbj|BAD74779.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 120 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +R + KLT +++ + G + S+ E G+S +ID + LA + L Sbjct: 1 MFPNRLKMLRLQKKLTHQDMADFLGITRQGYSKYENGQSQPDIDTINKLAEFFNVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|87120069|ref|ZP_01075965.1| Helix-turn-helix motif protein [Marinomonas sp. MED121] gi|86164771|gb|EAQ66040.1| Helix-turn-helix motif protein [Marinomonas sp. MED121] Length = 215 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H + LR RN R L E+ + +Q IS++E + + ++D + L Sbjct: 22 HGTSTKLRLEDYIAMQIRNKRVSQNLKISEVARISKISQGMISKIENAQVSTSLDTLGKL 81 Query: 70 AHTLDTPLWKLL 81 ++ + +L Sbjct: 82 CDSIGLSISQLF 93 >gi|85704294|ref|ZP_01035397.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] gi|85671614|gb|EAQ26472.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] Length = 136 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I R R + T + + G + + E+G + +++ + IL++ L P +L Sbjct: 11 IVGRVLRRTRLASGHTMTSLAAQCGVTHQQLQKYESGSNRVSVSRLFILSNALGIPPAEL 70 Query: 81 L 81 + Sbjct: 71 I 71 >gi|119384129|ref|YP_915185.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373896|gb|ABL69489.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 119 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ R +TQ+++ + G I + ETG + ++ + +A +D P Sbjct: 9 VGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAVDVP 63 >gi|300853248|ref|YP_003778232.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300433363|gb|ADK13130.1| putative DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 67 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R E + Q E+ N+ G ++ ++ LE GK +I M ++ LD P+ L Sbjct: 2 GLKIKLKRIERGIKQYELANKVGISRYYMQLLEKGKAKNPSIAVMKAISKELDMPVQDLF 61 >gi|237650850|ref|ZP_04525102.1| hypothetical protein SpneC1_09064 [Streptococcus pneumoniae CCRI 1974] gi|237821341|ref|ZP_04597186.1| hypothetical protein SpneC19_03317 [Streptococcus pneumoniae CCRI 1974M2] Length = 178 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|229194113|ref|ZP_04320982.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228589370|gb|EEK47320.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] Length = 108 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ ++S I E + + + +I +A Sbjct: 2 KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|227820316|ref|YP_002824287.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339315|gb|ACP23534.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 472 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ R +R+ + TQ + R G + S+++++E + ++ ++ LA + Sbjct: 5 KLYIGRKVRELREANRATQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64 Query: 79 KL 80 +L Sbjct: 65 EL 66 >gi|255519174|ref|ZP_05386850.1| putative prophage repressor [Clostridium difficile QCD-97b34] Length = 109 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+ L+QKE +Q+ IS +E G T+ + + + LL Sbjct: 3 NRIKELRQIKHLSQKEFGETLNLSQNHISSIEKGVRTVTDRTINDICDKYNVNKKWLLT 61 >gi|159897816|ref|YP_001544063.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890855|gb|ABX03935.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 268 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ L+Q ++ + + +S LETG+S + D ++ LA L+ PL + Sbjct: 7 GSLIRTWRQRRHLSQLDLASDANISTKHLSFLETGRSLPSRDMLLHLAEHLEVPLRE 63 >gi|284043287|ref|YP_003393627.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947508|gb|ADB50252.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 88 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + DA R + R R+E LTQ+ + RTG Q I ELE G ++ L Sbjct: 1 MPDATPFLRAL-GRALRERREELGLTQEAVSLRTGVPQRRIWELEAGIGNPTARTLLRLV 59 Query: 71 HTLDTPLWKLLK 82 LD P +L Sbjct: 60 SGLDMPCSELFT 71 >gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] Length = 509 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|153853196|ref|ZP_01994605.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] gi|149753982|gb|EDM63913.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] Length = 66 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R++ K++Q E+ G + I LE G ++ +A + + + Sbjct: 5 NIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYNPSLVLAAKIAKVFNVTIEDMF 61 >gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300] gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300] Length = 165 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 3 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62 >gi|300711725|ref|YP_003737539.1| transcriptional regulator, XRE family protein [Halalkalicoccus jeotgali B3] gi|299125408|gb|ADJ15747.1| transcriptional regulator, XRE family protein [Halalkalicoccus jeotgali B3] Length = 179 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R E LTQ + R G +Q I+ +E G + + + LD Sbjct: 7 QDLRERRIELDLTQSALAERAGVSQPLIARIEGGDVDPRLSTLRRIVEALD 57 >gi|283786292|ref|YP_003366157.1| phage repressor protein [Citrobacter rodentium ICC168] gi|282949746|emb|CBG89365.1| putative phage repressor protein [Citrobacter rodentium ICC168] Length = 231 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 N R +R + ++ + G + +S +ETGK + ++ A+ L + +L Sbjct: 4 GNRIRELRLARGMKISDLADAVGIDGANVSRVETGKQKSFTEQSLSKYANALGVDVAELF 63 Query: 82 KP 83 P Sbjct: 64 TP 65 >gi|168186931|ref|ZP_02621566.1| putative phage related transcriptional regulator [Clostridium botulinum C str. Eklund] gi|169295256|gb|EDS77389.1| putative phage related transcriptional regulator [Clostridium botulinum C str. Eklund] Length = 122 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 I + R E LTQ+++ + G + S I ++E+G+ + LA +T Sbjct: 3 IISKRLKESRTEVNLTQQQLAEKIGVSTSIIGDIESGRRVASKKTAKKLADFFNT 57 >gi|167567558|ref|ZP_02360474.1| helix-turn-helix domain protein [Burkholderia oklahomensis EO147] gi|167572602|ref|ZP_02365476.1| helix-turn-helix domain protein [Burkholderia oklahomensis C6786] Length = 304 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R R D+I R R A+L +++ +R +++ + +LE G+ + Sbjct: 9 KRPRGARFDFDSI-------GERLRAYRMAAELRSEDVADRLNISRAAVYKLERGEI-VK 60 Query: 63 IDNMIILAHTLDTPLWKLL 81 ID + LA L LL Sbjct: 61 IDTLERLAALFGVSLANLL 79 >gi|163746698|ref|ZP_02154055.1| transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] gi|161379812|gb|EDQ04224.1| transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] Length = 430 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R A L Q E+ ++G + S+++ +E + I ++ +A L L Sbjct: 7 GSRIRERRVMAGLKQAELAQQSGISASYLNLIEHNRRRIGGKLLLNIAQALGVEPQAL 64 >gi|159038045|ref|YP_001537298.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916880|gb|ABV98307.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 524 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RR + + M R+ L+Q+ + G Q W+ ++ET ++ ++ Sbjct: 104 RRASAGQGDGVRGMTDDMTIGQRVAFYRRRRGLSQEVLAGLVGKTQEWLRKVETNRADLD 163 Query: 63 -IDNMIILAHTLDTPLWKLL 81 + + +A LD PL L+ Sbjct: 164 RLSVIRAIAKALDVPLGDLI 183 >gi|159036440|ref|YP_001535693.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915275|gb|ABV96702.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 394 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINID---NMIILAHTLDTPL 77 + R R ++Q + G +Q +IS++E+G +ID +I +A L + Sbjct: 6 VGSRIRYWRIRRGGMSQTVLAGLAGLSQPYISQVESGHR--SIDRRSTLIAIAAALQVTV 63 Query: 78 WKLL 81 LL Sbjct: 64 ADLL 67 >gi|116250534|ref|YP_766372.1| HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255182|emb|CAK06256.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 469 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|160878433|ref|YP_001557401.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427099|gb|ABX40662.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 276 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 26/52 (50%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK KLTQKE+ + G +S+ E G S +I + L+ L +LL Sbjct: 14 RKIKKLTQKELAAKLGVTDKAVSKWERGLSCPDISLLSTLSDILGVTTGELL 65 >gi|73668235|ref|YP_304250.1| XRE family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72395397|gb|AAZ69670.1| transcriptional regulator, XRE family [Methanosarcina barkeri str. Fusaro] Length = 74 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R LTQ+ + + G + I +E GK +++ LA D + + Sbjct: 3 NNIKVYRAMHDLTQENLAEKVGVTRQTIHAIEKGKYDPSLELAFKLARLFDVRIEDIF 60 >gi|84687568|ref|ZP_01015443.1| hypothetical protein 1099457000232_RB2654_21803 [Maritimibacter alkaliphilus HTCC2654] gi|84664358|gb|EAQ10847.1| hypothetical protein RB2654_21803 [Rhodobacterales bacterium HTCC2654] Length = 113 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ + R R LTQ ++ +G + I+++E G+ ++ + LA L Sbjct: 48 VDRILNGESPLRVWRAYRGLTQVKLSEMSGVNRVQIADIEAGRKNGSVATLKALAGALGV 107 Query: 76 PLWKLL 81 + +++ Sbjct: 108 TIDEIV 113 >gi|94985466|ref|YP_604830.1| putative prophage repressor [Deinococcus geothermalis DSM 11300] gi|94555747|gb|ABF45661.1| LexA-like repressor [Deinococcus geothermalis DSM 11300] Length = 236 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M RR + D + R + L+Q+ G +Q + SE+E G+ Sbjct: 1 MARRPKLTTIKPD--------WARALEIRRLQLGLSQELAAEAGGLSQPYYSEIERGERE 52 Query: 61 INIDN---MIILAHTLDTPLWKL 80 + ++ LA L L L Sbjct: 53 LTTLTHSKLLGLARALGWTLADL 75 >gi|331087784|ref|ZP_08336710.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409765|gb|EGG89201.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] Length = 181 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+E LTQ+++ ++ ++ + E G ++ LA LD + +L+ Sbjct: 37 NIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDELI 93 >gi|324991594|gb|EGC23527.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 158 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N + +RK +LTQ E G +++ +S E G S I+ + + + + + Sbjct: 1 MIGDNIKYLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|325970042|ref|YP_004246233.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025280|gb|ADY12039.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 353 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R + + + + + G + + I + E G+S + +I LA +L Sbjct: 1 MFAERLKRARVSSGFSMQNLATKVGISANMIKKYEHGESMPSSATLIRLAASLGLKSEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 109 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R++A TQ + G + +S +E G S I+++ + L L +++ Sbjct: 12 GGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGVSADRII 70 >gi|293568751|ref|ZP_06680065.1| putative transcriptional regulator [Enterococcus faecium E1071] gi|291588468|gb|EFF20302.1| putative transcriptional regulator [Enterococcus faecium E1071] Length = 410 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R R+E TQ+ + + G ++S +S++E G ++ + + ++ +L Sbjct: 3 QVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLILDSLQE 62 Query: 76 PLW 78 L Sbjct: 63 ELV 65 >gi|257871213|ref|ZP_05650866.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805377|gb|EEV34199.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 67 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R++ L+Q + G A+ I+ +E K ++D I LA L T L L Sbjct: 2 NRVREFRQKMNLSQNALAKEIGVARQTINLIENNKYNPSLDLCIKLAKVLQTDLNSLF 59 >gi|256842347|ref|ZP_05547850.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262384742|ref|ZP_06077875.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301312235|ref|ZP_07218152.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|256735954|gb|EEU49285.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262293723|gb|EEY81658.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300829657|gb|EFK60310.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 154 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R+ +N + R+ L QK + + G +Q +S++E+ K ++ + + +A L Sbjct: 10 QRVHHGHNIASARRMKGLVQKTLADLLGMSQQRLSQIESTKI-VSDEILQKVAEITGVSL 68 Query: 78 WKL 80 L Sbjct: 69 EDL 71 >gi|302517506|ref|ZP_07269848.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302426401|gb|EFK98216.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 398 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ +Q I G + ++S +E G++ ++ + LA L P+ LL Sbjct: 4 LGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALL 63 >gi|240949823|ref|ZP_04754152.1| hypothetical protein AM305_01724 [Actinobacillus minor NM305] gi|240295740|gb|EER46435.1| hypothetical protein AM305_01724 [Actinobacillus minor NM305] Length = 186 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ + TQ+E+ + + +++E G + N+D + ++ + +LL Sbjct: 58 EKIRQLREARQWTQEEMATKLSMSTQGYAKIERGDTRSNLDRLEQISEVFGIDMVELL 115 >gi|219853616|ref|YP_002470738.1| hypothetical protein CKR_0273 [Clostridium kluyveri NBRC 12016] gi|219567340|dbj|BAH05324.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 186 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R + LT K + +TG + ++S+ E G +TI ++++ +A L+ Sbjct: 11 GEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNV 63 >gi|153952958|ref|YP_001393723.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146345839|gb|EDK32375.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 179 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R + LT K + +TG + ++S+ E G +TI ++++ +A L+ Sbjct: 4 GEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNV 56 >gi|13471465|ref|NP_103031.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022207|dbj|BAB48817.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 187 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R + E+ R+G +++ +S +E G ++ ++ +A L L+ Sbjct: 13 GRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLI 71 >gi|330835893|ref|YP_004410621.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4] gi|329568032|gb|AEB96137.1| XRE family transcriptional regulator [Metallosphaera cuprina Ar-4] Length = 184 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R+ A LTQ E+ R G +QS+I+++E G + + + L PL ++ Sbjct: 6 KDLRKMRESAGLTQSELAKRVGVSQSYIAKIEKGSVDPRLSIVRRIMDELS-PLIEI 61 >gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 66 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ +Q E+ + G ++ I+ LETGK ++ +A P+ ++ Sbjct: 3 SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYDPSLPLAFRIARLFGEPIEQVF 60 >gi|307137999|ref|ZP_07497355.1| putative regulator [Escherichia coli H736] gi|331641924|ref|ZP_08343059.1| putative regulator [Escherichia coli H736] gi|331038722|gb|EGI10942.1| putative regulator [Escherichia coli H736] Length = 140 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ L+Q ++ G+ QS I E G + + + ++L L +LL Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 >gi|302388002|ref|YP_003823824.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198630|gb|ADL06201.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 138 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLW 78 M+F + R EA LTQ E+ + G I E G + + + +A L+T Sbjct: 1 MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTE 60 Query: 79 KLL 81 LL Sbjct: 61 YLL 63 >gi|289450287|ref|YP_003474554.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184834|gb|ADC91259.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 243 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N R RK KLTQ ++ + ++ +++ E+G+ +++ + +A L L +L Sbjct: 13 IIGDNIRFFRKRLKLTQSDLGSLINKGKATVAKYESGQIILDVQTLYEIARALGVNLEQL 72 Query: 81 L 81 L Sbjct: 73 L 73 >gi|264678025|ref|YP_003277932.1| regulatory protein [Comamonas testosteroni CNB-2] gi|262208538|gb|ACY32636.1| putative regulatory protein [Comamonas testosteroni CNB-2] Length = 102 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +F+ R +A LTQ ++ Q+W+S++E G +++ + + + LD PL Sbjct: 34 KVFLKLLMQSRLDAGLTQVQLAELLEEDQTWVSKVERGVRRLDLVELTLWCNALDLPL 91 >gi|304317550|ref|YP_003852695.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779052|gb|ADL69611.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 438 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IRK K+ Q+E++++ + +IS +E+G+ST++ + +A L+ Sbjct: 7 GERLKKIRKMLKMKQRELQDK-NITRGFISMIESGRSTMSKETASAIAKKLNK 58 >gi|255036855|ref|YP_003087476.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254949611|gb|ACT94311.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 192 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +RK +T +EI + G +S +S++E ++ ++ M+ L LD L K Sbjct: 11 NKLKEVRKSKGVTLQEIADEAGVTKSLVSQIENSRTIPSLPVMLGLIKALDIDLNVFFK 69 >gi|254466890|ref|ZP_05080301.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687798|gb|EDZ48280.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 218 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R+ + ++ TG + + +S +E G+ + ++ +A L Sbjct: 32 GPKLRSLRQGKDMGLAQLGEHTGLSAAMLSRIERGQVFPTLATLLRIAMVFGVGLDHFFG 91 Query: 83 P 83 P Sbjct: 92 P 92 >gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72] gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057] Length = 242 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R E +TQ EI + +S + E+G++ N N+ LA L Sbjct: 17 GKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALASILGVS 70 >gi|318062399|ref|ZP_07981120.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077608|ref|ZP_07984940.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 398 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ +Q I G + ++S +E G++ ++ + LA L P+ LL Sbjct: 4 LGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALL 63 >gi|310830502|ref|YP_003965603.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] gi|309249969|gb|ADO59535.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 291 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 17 RERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHT 72 ER I F + +++R+ T ++ TG + S+I+ +E G+ + ++ + LA Sbjct: 149 TERAISDNFGSLIKHLRERKGYTLDDMSISTGISSSYINRIEKGERKSPSVKVIQKLATA 208 Query: 73 LDTPLWKLL 81 LDT LL Sbjct: 209 LDTNYMDLL 217 >gi|308186781|ref|YP_003930912.1| hypothetical protein Pvag_1273 [Pantoea vagans C9-1] gi|308057291|gb|ADO09463.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 25/51 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R+ + RTG +++ + ++E G+S+ + + +A + P Sbjct: 12 LRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62 >gi|331647421|ref|ZP_08348513.1| putative regulator [Escherichia coli M605] gi|331043145|gb|EGI15283.1| putative regulator [Escherichia coli M605] Length = 139 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ L+Q ++ G+ QS I E G + + + ++L L +LL Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 >gi|296533427|ref|ZP_06896012.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296266247|gb|EFH12287.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 189 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ + E+ R+G +++ IS++E + + + L+ L +LL Sbjct: 10 LAQRLKTEREARGWSLSELAERSGVSKAMISKIERDEVSPTAALLGRLSGAFGLSLSQLL 69 >gi|257868230|ref|ZP_05647883.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874497|ref|ZP_05654150.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257802344|gb|EEV31216.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808661|gb|EEV37483.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 176 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+M F + +R LTQ++ + + +S E ++ +++ +I +A L Sbjct: 18 EKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFQLSL 77 Query: 78 WKLL 81 +L+ Sbjct: 78 DELI 81 >gi|237733365|ref|ZP_04563846.1| predicted protein [Mollicutes bacterium D7] gi|229383577|gb|EEO33668.1| predicted protein [Coprobacillus sp. D7] Length = 79 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E LTQ E+ TG +S I+ E + +D +I LA+ L L Sbjct: 4 GKRLRKLRIEHNLTQNEVSILTGIKRSSIASYELNEQLPPVDKLIQLANLYKVSLDYL 61 >gi|225376748|ref|ZP_03753969.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans DSM 16841] gi|225211374|gb|EEG93728.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans DSM 16841] gi|291524817|emb|CBK90404.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528861|emb|CBK94447.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291539146|emb|CBL12257.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 67 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E L+Q+E+ + + I+ LE GK ++ I + L+ L L Sbjct: 5 RLKLARVEMNLSQEELAAKVNVTRPTINLLEGGKFNPSLQLCIRICKVLNKTLNDLF 61 >gi|295836675|ref|ZP_06823608.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] gi|197699706|gb|EDY46639.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] Length = 276 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 D F + R +R TQ+E+ R G + S +S +ETG+ Sbjct: 8 DPARSPGEAFGEHLRRLRDGQGWTQEELAARMGISASHVSAVETGRRPPT 57 >gi|167770416|ref|ZP_02442469.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] gi|167667423|gb|EDS11553.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + +R+ ++Q+ + + G + ETGK + ++ LA + LL+P Sbjct: 3 NLKALRESKGVSQQTVADYLGITRQAYGNYETGKRQADYAALLRLAAFFGVSVDALLQP 61 >gi|148994310|ref|ZP_01823574.1| hypothetical protein CGSSp9BS68_07247 [Streptococcus pneumoniae SP9-BS68] gi|168489414|ref|ZP_02713613.1| helix-turn-helix domain protein [Streptococcus pneumoniae SP195] gi|147927340|gb|EDK78372.1| hypothetical protein CGSSp9BS68_07247 [Streptococcus pneumoniae SP9-BS68] gi|183572073|gb|EDT92601.1| helix-turn-helix domain protein [Streptococcus pneumoniae SP195] gi|332075783|gb|EGI86250.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332204131|gb|EGJ18196.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 287 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|154687854|ref|YP_001423015.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] gi|126363018|emb|CAM35832.1| hypothetical protein RBAM03558 [Bacillus amyloliquefaciens FZB42] gi|154353705|gb|ABS75784.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] Length = 67 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +R A ++Q ++ + I+ +E K + +AH L+T + K+ Sbjct: 3 NNIKKLRTAADISQNDLAKLCNVTRQTINAIENNKYDPTLSLAFSIAHALNTGIDKVF 60 >gi|25012010|ref|NP_736405.1| hypothetical protein gbs1972 [Streptococcus agalactiae NEM316] gi|76787285|ref|YP_330541.1| transcriptional regulator [Streptococcus agalactiae A909] gi|24413553|emb|CAD47631.1| Unknown [Streptococcus agalactiae NEM316] gi|76562342|gb|ABA44926.1| transcriptional regulator, putative [Streptococcus agalactiae A909] Length = 164 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +R+ +TQ E+ N+ G + + E KS +I + +A + + Sbjct: 1 MTFAKRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDY 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|270654679|ref|ZP_06222291.1| DNA-binding protein [Haemophilus influenzae HK1212] gi|270317067|gb|EFA28714.1| DNA-binding protein [Haemophilus influenzae HK1212] Length = 81 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +L+Q+++ + + S +++E G++ + D ++ +A + L L+ Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62 >gi|257065731|ref|YP_003151987.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256797611|gb|ACV28266.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 296 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + IF ++IR + L+Q+ + + IS +E K ++DN+ L+ L L Sbjct: 5 KYIFGKFLKDIRNKRNLSQERLAELSFINIKTISNMENAKVNFDLDNLDRLSSILFVDLI 64 Query: 79 K 79 + Sbjct: 65 E 65 >gi|116511497|ref|YP_808713.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107151|gb|ABJ72291.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 85 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RN R LTQ ++ + F++ + E GK NI+ + LA + + KL++ Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVDKLIR 85 >gi|172057104|ref|YP_001813564.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989625|gb|ACB60547.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 395 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK KLTQ ++ + +S +S +E K+T ++ + +AH L + L Sbjct: 1 MLGQRIKSLRKAKKLTQSDVADGI-MTKSMLSMIENEKATPSLPALQSIAHRLHVSIDAL 59 Query: 81 L 81 L Sbjct: 60 L 60 >gi|325291464|ref|YP_004277328.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059317|gb|ADY63008.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 121 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R +R+ +TQKE+ G + +++S LE GK + D + +A + Sbjct: 4 FAEAVRLLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNI 58 >gi|311110004|ref|YP_003982855.1| helix-turn-helix domain-containing protein 1 [Achromobacter xylosoxidans A8] gi|310764693|gb|ADP20140.1| helix-turn-helix domain protein 1 [Achromobacter xylosoxidans A8] Length = 96 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +RK L+Q+ + + +++++S LE + + + + L+ Sbjct: 3 AKHSLAAALRTVRKARGLSQEAFSDVS--SRTYLSVLERDLKSPTLSKLSDICDVLNVHP 60 Query: 78 WKLL 81 LL Sbjct: 61 VTLL 64 >gi|295425504|ref|ZP_06818196.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] gi|295064795|gb|EFG55711.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] Length = 121 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 + R++ KLTQ+++ +G + ++IS LE K+ I+I + +A L+T + Sbjct: 5 LGDEISRRRRDQKLTQEDLAELSGLSVNFISRLERTKNQNISIQKLDSIACALNTTTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|291534410|emb|CBL07522.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 242 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RER+I IRKE L+Q ++ G +++ +E GK + + +LA P Sbjct: 9 RERII------QIRKERGLSQNQLAKDFGISRTHYCNVENGKKPVTESFLKVLASGYKIP 62 Query: 77 L 77 + Sbjct: 63 M 63 >gi|229815069|ref|ZP_04445406.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] gi|229809299|gb|EEP45064.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] Length = 206 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ + R E L+Q ++ R ++ IS E G++ ++ ++++L++ + L+ Sbjct: 3 LGSHIKEHRTELGLSQDDLAERIYVSRQTISNWECGRTYPDVQSLLLLSNVFGVTVDSLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|307153522|ref|YP_003888906.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983750|gb|ADN15631.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 533 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R+K+ + S + RK ++Q+E+ G +QSWI +LE G+ Sbjct: 460 RKKQQRINKSPKSKTSHRLSAEQILTARKRQGISQRELAQMIGKSQSWIRDLERGRFCAK 519 Query: 63 IDNMIILAHTLD 74 ++ + L L+ Sbjct: 520 PEDQVRLQKILN 531 >gi|114565053|ref|YP_752567.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114336346|gb|ABI73728.1| transcriptional regulator, XRE family [Shewanella frigidimarina NCIMB 400] Length = 511 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINIDN 65 +++R+ RN+RK LT +++ R + S++S +E GK + D Sbjct: 5 KSLMRKTHFLGTKIRNLRKRNNLTMEDLSARCVRVDSGNSPSVSYLSMIERGKRVPSADM 64 Query: 66 MIILAHTLDTP 76 + ++A Sbjct: 65 LAVIAVVFQKE 75 >gi|332976082|gb|EGK12950.1| helix-turn-helix domain protein [Desmospora sp. 8437] Length = 359 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ +TQ+++ G ++ I+ E G+ST + + LA TL P+ LL Sbjct: 9 QLRPLREQLTVTQEDLGRSVGVSRQTIAAWEKGESTPTVAQLFSLARTLGVPVEILL 65 >gi|307707599|ref|ZP_07644080.1| putative transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307616312|gb|EFN95504.1| putative transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 116 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 13 QKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEITPEEFF 70 >gi|294992409|gb|ADF57341.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] Length = 142 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +RK TQ + G + S ETGK T + + LA + + Sbjct: 4 KLLPQKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDD 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 140 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + RKE ++Q+E + ++ +S E K+ +ID++I +++ D L +L+K Sbjct: 15 NKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKTLPDIDHLIDISNLYDLSLDELIK 73 >gi|227501064|ref|ZP_03931113.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227216837|gb|EEI82235.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 95 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE + Q ++ N G ++ IS +E G ++ + LA D + + Sbjct: 31 NKLSEIRKEKGINQTDLGNMVGVSRQTISLIERGDYNPSVMVALSLARVFDMRVEDIF 88 >gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 39/66 (59%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +++ F + +RKE +TQ+E+ ++ G ++ I+ ETG++ + + + ++A+ L T Sbjct: 1 MTDKIKFKERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILST 60 Query: 76 PLWKLL 81 LL Sbjct: 61 TTDYLL 66 >gi|71906945|ref|YP_284532.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71846566|gb|AAZ46062.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 273 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK KL+Q+++ G +Q I +E+G+ ++ L L P+ + Sbjct: 3 NRVQQFRKALKLSQRQLAEAVGTSQQQIQRIESGQIAAKLEMAAKLCAALQKPMEVVF 60 >gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3] gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3 gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3] Length = 223 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78 + RK AKLTQ ++ R G Q+ IS LE GKS + LA LW Sbjct: 6 RIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGT-SYIAQLASACGVSALW 59 >gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +A +T E+ R+G +++ I +E +S+ + L LD L ++ Sbjct: 14 GRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSATAALLNKLCAALDVTLSDVV 72 >gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] Length = 165 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 3 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62 >gi|324993316|gb|EGC25236.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|325694019|gb|EGD35937.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327461585|gb|EGF07916.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327473309|gb|EGF18729.1| transcriptional regulator [Streptococcus sanguinis SK408] gi|327489444|gb|EGF21237.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 108 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102 >gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 255 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + ++Q E+ + ++ +S E G++ N + + +L+ LD + LL Sbjct: 9 ELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVLDVSINTLL 62 >gi|288904825|ref|YP_003430047.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288731551|emb|CBI13106.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 65 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R ++Q + + G A+ ++ +E K ++D I LA L T L L Sbjct: 2 NRVREFRLNLGISQLALAKQIGVARQTVNLIENNKYNPSLDLCIKLAEALQTDLNTLF 59 >gi|257056503|ref|YP_003134335.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] gi|256586375|gb|ACU97508.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017] Length = 158 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T ++I + ++SE+E G+ + + + + L+ PL Sbjct: 6 REAIGDRLRHARTTKRRTLRDISRAAKVSLGYLSEVERGQKEASSELLASICEALELPLG 65 Query: 79 KLL 81 +LL Sbjct: 66 ELL 68 >gi|260587016|ref|ZP_05852929.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] gi|260542638|gb|EEX23207.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] Length = 120 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK L+Q E+ N G ++ IS+ E +S + +++L+ L L+ Sbjct: 3 FNEKLIELRKSKGLSQDELGNALGVSRQTISKWELAQSYPDFQRLVLLSDYFGLSLDALV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|218132335|ref|ZP_03461139.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291086949|ref|ZP_06344978.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|217992673|gb|EEC58675.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291076456|gb|EFE13820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 204 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIILAHTLDTPL 77 F + + +R TQ+E+ T + I E G+ + N++ LA LD Sbjct: 30 KTFADRLKELRNIRNYTQEELGKITNISVQSIRRYEQGRLNEEPSAYNLLQLAKALDVTP 89 Query: 78 WKLL 81 LL Sbjct: 90 EYLL 93 >gi|218133297|ref|ZP_03462101.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] gi|217992170|gb|EEC58174.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] Length = 154 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F++ +RKE TQ+E+ ++ G + +S G+ + ++ +A L + Sbjct: 34 ETFISRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGERVPTVTTIVSIAQVLGASVDY 93 Query: 80 LL 81 L+ Sbjct: 94 LV 95 >gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686] gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 182 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMVEFF 64 >gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2] Length = 178 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 25/62 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R ++ + + G + + +S++E G + ++ + L+ + L Sbjct: 1 MLGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTEPSLSTLRALSAVFGESMAAL 60 Query: 81 LK 82 + Sbjct: 61 FR 62 >gi|222053496|ref|YP_002535858.1| plasmid maintenance system antidote protein, XRE family [Geobacter sp. FRC-32] gi|221562785|gb|ACM18757.1| plasmid maintenance system antidote protein, XRE family [Geobacter sp. FRC-32] Length = 116 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQK + TG Q ISE+E GK +I + LA L+ +LL Sbjct: 61 LRAYRNREGLTQKRLAEMTGIPQHHISEMENGKRSIGKERAKRLAEALNCDYRRLL 116 >gi|36958742|gb|AAQ87210.1| Transcriptional regulator [Sinorhizobium fredii NGR234] Length = 181 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M R +RK LT +++ + + ++S++E ++ + I + ++ TL Sbjct: 1 MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGV 56 >gi|89896410|ref|YP_519897.1| hypothetical protein DSY3664 [Desulfitobacterium hafniense Y51] gi|89335858|dbj|BAE85453.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 103 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%) Query: 7 DEPHLSDAILR-ERM------IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 D + + + ER + R+ L+QK++ + G Q I+ LE+ K+ Sbjct: 15 DLYNDPNIVPPAERAKIDFEVALIGKLIEAREAKGLSQKQLADLAGLKQPAIARLESMKA 74 Query: 60 TINIDNMIILAHTLDTPL 77 T ID + + H L L Sbjct: 75 TPQIDTLFKILHPLGYTL 92 >gi|16760810|ref|NP_456427.1| regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25512966|pir||AG0738 probable regulator STY2066 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503107|emb|CAD05610.1| putative regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|323977012|gb|EGB72099.1| helix-turn-helix protein [Escherichia coli TW10509] gi|324012832|gb|EGB82051.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 139 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R++ L+Q ++ G+ QS I E G + + + ++L L +LL Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76 >gi|325690086|gb|EGD32090.1| transcriptional regulator [Streptococcus sanguinis SK115] Length = 108 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102 >gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 197 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER I + + +R + LT + +G +++ IS +E G+++ + + L L Sbjct: 14 ERSI-GDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEASPTASLLARICAALGLSL 72 >gi|300854654|ref|YP_003779638.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434769|gb|ADK14536.1| predicted transcription regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 27/57 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +F + + R++ LTQ+++ + +++ I +LETG + + + + Sbjct: 1 MFSDKLKRYRRDLGLTQRDLGRKLDLSKATIGQLETGLKEPSRILLEKIYKISGKNM 57 >gi|294787002|ref|ZP_06752256.1| putative Helix-turn-helix domain protein [Parascardovia denticolens F0305] gi|294485835|gb|EFG33469.1| putative Helix-turn-helix domain protein [Parascardovia denticolens F0305] Length = 170 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H D+ + R + R++R + T +EI R G + ++SE+E G+ + + + + Sbjct: 69 HQDDSEISLRKVQGGVLRSLRTKDHKTLREISERAGVSLGYLSEVERGQKEASSELLTSI 128 Query: 70 AHTLDTPLWKLL 81 L L +L Sbjct: 129 TEALGVRLSDML 140 >gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 117 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RKEA LTQ+E+ +Q I E G+ I+ + +A + L Sbjct: 1 MFPKRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGERKPKIEAINNIAKYFNVSTEYL 60 >gi|229182053|ref|ZP_04309349.1| transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228601468|gb|EEK58993.1| transcriptional regulator, XRE [Bacillus cereus 172560W] Length = 108 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ ++S I E + + + +I +A Sbjct: 2 KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12] gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12] gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] Length = 123 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RK+ TQ E+ + +Q I E G++ N + + LAH + L Sbjct: 1 MLKDRIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAEPNSEALTKLAHLFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|224583844|ref|YP_002637642.1| hypothetical protein SPC_2069 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468371|gb|ACN46201.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|213616057|ref|ZP_03371883.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 156 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|207856821|ref|YP_002243472.1| hypothetical protein SEN1367 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708624|emb|CAR32946.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|125624656|ref|YP_001033139.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493464|emb|CAL98438.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300071447|gb|ADJ60847.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 85 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RN R LTQ ++ + F++ + E GK NI+ + LA + + KL++ Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVDKLIR 85 >gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R E TQ ++ RTG ++ + +E K T +++ +A + + Sbjct: 1 MIQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYTPSLELAFKIAQVFGVEITTV 60 Query: 81 LKP 83 P Sbjct: 61 FSP 63 >gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus ND03] Length = 229 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ ++Q + G ++S E GK+ N N+ +LA Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56 >gi|291531440|emb|CBK97025.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 108 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLWKL 80 RKE L Q E+ ++S +ETG+S +++ ++ L L+ TP + L Sbjct: 8 LGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNATPDYFL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|240851111|ref|YP_002972513.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268234|gb|ACS51822.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ R +L+QK + + G + I + E G + +++ ++ +A L+ P+ Sbjct: 12 LIGKRIRHRRISIELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPM 68 >gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126] gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126] Length = 229 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ ++Q + G ++S E GK+ N N+ +LA Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56 >gi|225027560|ref|ZP_03716752.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] gi|224955076|gb|EEG36285.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] Length = 180 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E + RK+ LTQKE+ + G +S+ E G+S ++ + L L+ Sbjct: 14 MVEPIKVGRFIAQNRKDLNLTQKELAEKLGVTDRAVSKWENGRSIPDVGIIESLCKELNI 73 Query: 76 PLWKLL 81 + + Sbjct: 74 SIGEFF 79 >gi|149919009|ref|ZP_01907494.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820162|gb|EDM79581.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 125 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 E F + R +R E LTQ+ + R+G + + LE GK + + + L Sbjct: 5 QRSDPEARRFGRHIRALRSERGLTQELLAERSGLSADSVRSLENGKFSPSRGTLRKLCTG 64 Query: 73 LDTPL 77 LD + Sbjct: 65 LDLQM 69 >gi|149020301|ref|ZP_01835193.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] gi|147930603|gb|EDK81585.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] Length = 198 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+E KL+QKEI GF+ +E G+S I + +LA + LL Sbjct: 2 NRLKELRQEKKLSQKEIAETLGFSLRSFQRMENGESQIKPEKAQLLADYFGVSVANLL 59 >gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9] Length = 229 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ ++Q + G ++S E GK+ N N+ +LA Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56 >gi|152985545|ref|YP_001349953.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960703|gb|ABR82728.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 + RK A L+Q ++ G Q+ IS+LE GKS + +A PLW Sbjct: 6 RIKAARKHANLSQVQLAQAVGMTQTSISDLERGKSRAT-SFVAQIAGACGVNPLW 59 >gi|62180230|ref|YP_216647.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127863|gb|AAX65566.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714702|gb|EFZ06273.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR+ ++Q + G ++S E GK+ N N+ +LA Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56 >gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449] gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449] Length = 228 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +R E ++TQK+ RTG + + E G + D + ++ + P+ Sbjct: 1 MIGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPM 57 >gi|323359589|ref|YP_004225985.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275960|dbj|BAJ76105.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 107 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN------IDNMIILAHTLDT 75 F N R R +A LTQ+++ + +LE G+S + ++ L+ L Sbjct: 33 FGANLRRARLDAGLTQEDVAVSARISLFTYQKLEKGESNPGTPANPRLQTLLALSAVLGV 92 Query: 76 PLWKLL 81 + L+ Sbjct: 93 SIEDLV 98 >gi|297626497|ref|YP_003688260.1| XRE family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922262|emb|CBL56834.1| Helix-turn-helix XRE-family like proteins [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 97 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R++ R R + T +++ + ++SE+E G+ + + + + L+ PL Sbjct: 3 RVLLGQTLREQRIHDRRTLRDVSLAARVSLGYLSEVERGQKEASSELLFSICQALNVPLS 62 Query: 79 KLLK 82 ++L+ Sbjct: 63 EILR 66 >gi|229823422|ref|ZP_04449491.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC 51271] gi|229787197|gb|EEP23311.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC 51271] Length = 71 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ KL+Q + G A+ I+ +E K ++D + LA+ L+T L L Sbjct: 2 NRVRELRQSRKLSQLALAKEVGVARQTINLIENDKYNPSLDLCLKLAYALETDLNTLF 59 >gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 65 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 28/57 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E +Q ++ R G ++ I+ +ETG+ ++ +A + P+ + + Sbjct: 5 MRQLRSELGWSQADLAERLGVSRQTINAIETGRYDPSLPLAFKIAKVFERPIEGIFE 61 >gi|227874912|ref|ZP_03993064.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|306818236|ref|ZP_07451966.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|227844489|gb|EEJ54646.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|304648975|gb|EFM46270.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 114 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 34/73 (46%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 H R R++R+ +T +++ R + ++SE+E G+ + + + + Sbjct: 9 HKPSDPPVLRRELGEVLRDLRQSRSMTLRDVSARARVSLGYLSEIERGQKEASSELLAAI 68 Query: 70 AHTLDTPLWKLLK 82 + LD P+ +L+ Sbjct: 69 CYALDAPVSFVLR 81 >gi|227832157|ref|YP_002833864.1| hypothetical protein cauri_0327 [Corynebacterium aurimucosum ATCC 700975] gi|262183991|ref|ZP_06043412.1| hypothetical protein CaurA7_08368 [Corynebacterium aurimucosum ATCC 700975] gi|227453173|gb|ACP31926.1| hypothetical protein cauri_0327 [Corynebacterium aurimucosum ATCC 700975] Length = 85 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR K+ +P + L F R+E + Q+ + + G ++S + +E G S + Sbjct: 7 PRHKQGKPAGDNPQLIA---LGEGFAQRRRELGILQQALAEKAGISRSTLHTIEHGGSGV 63 Query: 62 NIDNMIILAHTLDTPL 77 + +I +A LD + Sbjct: 64 RWEKVIAVAEALDLEM 79 >gi|254510869|ref|ZP_05122936.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534580|gb|EEE37568.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 179 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + L+ + TG +++ + ++E G+S+ I + +A PL L+ Sbjct: 1 MRAASGLSLSRVAEMTGVSKAMLGQIERGESSPTIATLWKIAKGFQLPLSALI 53 >gi|168185962|ref|ZP_02620597.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] gi|169295926|gb|EDS78059.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] Length = 107 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + +N + RKE ++ ++ G + S++S+LE KS +++ + LA L+ + Sbjct: 1 MLGDNIKAFRKEKGMSLNKLAKSAGMSPSYLSDLENNKSVNPSMEKLNKLAEILEVRIED 60 Query: 80 LLK 82 K Sbjct: 61 FYK 63 >gi|58617626|ref|YP_196825.1| putative transcriptional regulator [Ehrlichia ruminantium str. Gardel] gi|58417238|emb|CAI28351.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Gardel] Length = 201 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K P S + + R ++Q ++ N+ G + + E G + Sbjct: 45 MSGQKSATPK-SRPHPVD-ECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNR 102 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I I + LA L+ + ++ Sbjct: 103 IVISRLYQLASVLNVEVRDIM 123 >gi|325290759|ref|YP_004266940.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966160|gb|ADY56939.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 105 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RKE +TQ E+ G Q+ I+ +E K+ + + + L L + P Sbjct: 38 ARKEKGMTQAELDALCGINQTHIARIENNKADPQLSTIFKILRPLGKTLAVVDVP 92 >gi|311069889|ref|YP_003974812.1| putative transcriptional repressor [Bacillus atrophaeus 1942] gi|310870406|gb|ADP33881.1| putative transcriptional repressor [Bacillus atrophaeus 1942] Length = 139 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +RK LT ++ +G + + IS +E GK + LA TL P L Sbjct: 4 FGEQLRALRKARHLTVNQLAIYSGVSSATISRIENGKRGIPKPATIRKLADTLKMPYENL 63 Query: 81 L 81 + Sbjct: 64 M 64 >gi|296394527|ref|YP_003659411.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181674|gb|ADG98580.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 112 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Query: 2 PRRKRDEPHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56 PR + P L A+ E R+ + Q E G +S +S++E Sbjct: 6 PREEGAAPDLGYAVPMEHAALFNKHVGAEIALWRRVLDMGQDEFAAMVGIERSRLSKIEN 65 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83 GK +D + +A +DT + LL+P Sbjct: 66 GKLAARMDEFLAVAALVDTNVVDLLQP 92 >gi|228931409|ref|ZP_04094334.1| hypothetical protein bthur0010_60490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828215|gb|EEM73925.1| hypothetical protein bthur0010_60490 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 190 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 27/46 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 N +RKE ++Q+++ + G ++++ISE+E K N+ I + Sbjct: 2 NRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKI 47 >gi|218133316|ref|ZP_03462120.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC 43243] gi|217992189|gb|EEC58193.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC 43243] Length = 217 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R E K++Q + TG+ +S I+++E G+ I+ + A L +L+ Sbjct: 12 KNIRERRIELKMSQDTLAELTGYRDRSSIAKIEKGEVDISESKIREFAKALKVSPGELM 70 >gi|295840749|ref|ZP_06827681.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197696319|gb|EDY43252.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 75 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P DA+ R + R+ R L+Q+++ RTG + + +E+G + + Sbjct: 2 PPEPDALDAFRRQLADRIRDHRLWRNLSQEQVAERTGLSAHTVQRIESGTRETKVSYLFR 61 Query: 69 LAHTLDTPLWKLL 81 L H LD + LL Sbjct: 62 LTHALDCEVRDLL 74 >gi|38637847|ref|NP_942821.1| putative regulatory protein [Ralstonia eutropha H16] gi|32527185|gb|AAP85935.1| putative regulatory protein [Ralstonia eutropha H16] Length = 167 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N + R LTQ+++ + G ++ ++ +E G + ++ L L L Sbjct: 5 LLGNAIQRKRVALGLTQQQLADMAGLSRQSLNGIEHGSVNATLQSLGRLMDVLGLAL 61 >gi|56413411|ref|YP_150486.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362334|ref|YP_002141971.1| hypothetical protein SSPA1132 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127668|gb|AAV77174.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093811|emb|CAR59293.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|86136992|ref|ZP_01055570.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826316|gb|EAQ46513.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 204 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + R+ RKE LT +E +S +S++E ++ + + + L TL+ Sbjct: 19 PDGEVLGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELE 78 Query: 77 LWKLL 81 +L Sbjct: 79 TPQLF 83 >gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] Length = 127 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +RK+ LTQKE+ + +QS I+ E + + + +A+ D + Sbjct: 1 MSFGHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEILPTSETLSKIANYFDVSIDF 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|310829679|ref|YP_003962036.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612] gi|308741413|gb|ADO39073.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612] Length = 243 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +RK KLTQ ++ R G A + +S E+G+ ++ M L + D +L Sbjct: 9 FPARLRELRKSHKLTQAQMAARLGIAPASLSYYESGERLPDLRVMDTLYNEFDVSFEYML 68 >gi|302387113|ref|YP_003822935.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302197741|gb|ADL05312.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 140 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLW 78 M+F + + +R A ++Q+E+ NRTG + I E+ + ++ + L L T + Sbjct: 1 MLFGDRIKELRNLADMSQQELANRTGLSLRSIQNYESNQRYPKDVAILNKLCAALGTTIE 60 Query: 79 KLLK 82 +L+K Sbjct: 61 ELMK 64 >gi|260554213|ref|ZP_05826469.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260404661|gb|EEW98175.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 101 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLW 78 + R R +++Q E+ R G + +S LE G ++++N++ +A L L Sbjct: 14 LLGERLRKQRLFLEMSQTEVAARAGVGVNTVSNLEAG-RNVSVENLVRIAMVLGRLNELQ 72 Query: 79 KLLKP 83 +L KP Sbjct: 73 ELFKP 77 >gi|253316015|ref|ZP_04839228.1| hypothetical protein SauraC_07702 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257426314|ref|ZP_05602723.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428649|ref|ZP_05605046.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431575|ref|ZP_05607946.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433971|ref|ZP_05610323.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257436875|ref|ZP_05612918.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|282915390|ref|ZP_06323166.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282926055|ref|ZP_06333701.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|293509091|ref|ZP_06667875.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293511865|ref|ZP_06670558.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293550575|ref|ZP_06673246.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|257270886|gb|EEV03072.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274520|gb|EEV06026.1| helix-turn-helix containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277677|gb|EEV08354.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281109|gb|EEV11252.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257283786|gb|EEV13910.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|270300313|gb|ACZ69119.1| hypothetical protein SAP065B_019 [Staphylococcus aureus] gi|281334218|gb|ADA61302.1| hypothetical protein SAP013A_027 [Staphylococcus aureus] gi|281334580|gb|ADA61664.1| hypothetical protein SAP026A_011 [Staphylococcus aureus] gi|282165943|gb|ADA79963.1| hypothetical protein SAP095A_012 [Staphylococcus aureus] gi|282165989|gb|ADA80009.1| hypothetical protein SAP096A_026 [Staphylococcus aureus] gi|282166399|gb|ADA80415.1| hypothetical protein SAP085C_016 [Staphylococcus aureus] gi|282166455|gb|ADA80471.1| hypothetical protein SAP088A_032 [Staphylococcus aureus] gi|282166595|gb|ADA80611.1| hypothetical protein SAP093C_026 [Staphylococcus aureus] gi|282166914|gb|ADA80930.1| hypothetical protein SAP084B_016 [Staphylococcus aureus] gi|282166965|gb|ADA80981.1| hypothetical protein SAP086A_019 [Staphylococcus aureus] gi|282167021|gb|ADA81037.1| Transcriptional regulator, XRE family [Staphylococcus aureus] gi|282312457|gb|EFB42862.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282320717|gb|EFB51052.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|290918638|gb|EFD95715.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291094657|gb|EFE24932.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291465307|gb|EFF07840.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] Length = 64 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +Q+E+ N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEDIKEQRELKGWSQEELTNILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|238911950|ref|ZP_04655787.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|229148382|ref|ZP_04276660.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635082|gb|EEK91634.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 79 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ V+ + R E LTQ+E+ + I +E K ++ I +A +LD L + Sbjct: 14 LMSVSKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDE 73 Query: 80 LL 81 L Sbjct: 74 LF 75 >gi|255655114|ref|ZP_05400523.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451102|ref|ZP_06892844.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880545|ref|ZP_06904507.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260109|gb|EFH06962.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428499|gb|EFH14384.1| DNA-binding protein [Clostridium difficile NAP07] Length = 183 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E ++ + TG +++ + ++E G+S+ + + ++ LL Sbjct: 8 VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLL 67 >gi|240147061|ref|ZP_04745662.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257200784|gb|EEU99068.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 334 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI RK+ +Q+E+ + ++ +S+ E+ +S ++ +I L+ L Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEILGVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|212696766|ref|ZP_03304894.1| hypothetical protein ANHYDRO_01308 [Anaerococcus hydrogenalis DSM 7454] gi|212676265|gb|EEB35872.1| hypothetical protein ANHYDRO_01308 [Anaerococcus hydrogenalis DSM 7454] Length = 116 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F RKE +TQK+I + + +S+ E GKS +I ++ LA LD L Sbjct: 6 KKDFGEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLV 65 Query: 79 KLLK 82 LL+ Sbjct: 66 NLLE 69 >gi|167549848|ref|ZP_02343606.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168235794|ref|ZP_02660852.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168819468|ref|ZP_02831468.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194734886|ref|YP_002114693.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198246100|ref|YP_002215480.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352653|ref|YP_002226454.1| hypothetical protein SG1453 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|194710388|gb|ACF89609.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291185|gb|EDY30538.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940616|gb|ACH77949.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272434|emb|CAR37321.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324984|gb|EDZ12823.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205343756|gb|EDZ30520.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085841|emb|CBY95617.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614917|gb|EFY11842.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619357|gb|EFY16237.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623169|gb|EFY20011.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628458|gb|EFY25246.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634866|gb|EFY31597.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638569|gb|EFY35264.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640896|gb|EFY37544.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645375|gb|EFY41903.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651740|gb|EFY48112.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654360|gb|EFY50682.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661201|gb|EFY57427.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662671|gb|EFY58878.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322671870|gb|EFY67991.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677085|gb|EFY73149.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680253|gb|EFY76292.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685318|gb|EFY81314.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194137|gb|EFZ79335.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199377|gb|EFZ84471.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203486|gb|EFZ88510.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205869|gb|EFZ90832.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217196|gb|EGA01917.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219108|gb|EGA03611.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227274|gb|EGA11444.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232058|gb|EGA16165.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234585|gb|EGA18672.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238038|gb|EGA22097.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243361|gb|EGA27380.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246168|gb|EGA30153.1| hypothetical protein SEEM9199_07956 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259102|gb|EGA42748.1| hypothetical protein SEEM8283_04720 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260430|gb|EGA44043.1| hypothetical protein SEEM8284_18305 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266482|gb|EGA49969.1| hypothetical protein SEEM8285_00870 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271206|gb|EGA54633.1| hypothetical protein SEEM8287_05157 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326627719|gb|EGE34062.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|146311635|ref|YP_001176709.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318511|gb|ABP60658.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 175 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ + ++ + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LATTLKTERQARGWSLSKLADETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 SP 68 >gi|126698714|ref|YP_001087611.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100133|ref|ZP_05329110.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306023|ref|ZP_05350195.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250151|emb|CAJ67972.1| Transcriptional regulator, RmlC-type [Clostridium difficile] Length = 183 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E ++ + TG +++ + ++E G+S+ + + ++ LL Sbjct: 8 VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLL 67 >gi|254974648|ref|ZP_05271120.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092038|ref|ZP_05321516.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255313774|ref|ZP_05355357.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516456|ref|ZP_05384132.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649554|ref|ZP_05396456.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682721|ref|YP_003214006.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686319|ref|YP_003217452.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519681|ref|ZP_07406028.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260208884|emb|CBA61852.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212335|emb|CBE03128.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E ++ + TG +++ + ++E G+S+ + + ++ LL Sbjct: 8 VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLL 67 >gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705] gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 298 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F N + +R + + Q+++ G ++ IS+ E+ K+ +D ++++ L Sbjct: 1 MSFRANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|16760223|ref|NP_455840.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142008|ref|NP_805350.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161903|ref|ZP_03347613.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426582|ref|ZP_03359332.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586064|ref|ZP_03367890.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213645936|ref|ZP_03375989.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864716|ref|ZP_03386835.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513334|pir||AI0661 conserved hypothetical DNA-binding protein STY1400 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502518|emb|CAD01666.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137637|gb|AAO69199.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 200 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|302347097|ref|YP_003815395.1| helix-turn-helix protein [Prevotella melaninogenica ATCC 25845] gi|302151032|gb|ADK97293.1| helix-turn-helix protein [Prevotella melaninogenica ATCC 25845] Length = 135 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RM+ N K+ ++QKE + ++S +S +G ID + ++ LD L Sbjct: 26 RMMIAAKIGNALKDKGISQKEFAKKLKKSESEVSSWLSGDRNFTIDTLTEISLALDISLL 85 Query: 79 K 79 Sbjct: 86 D 86 >gi|218690034|ref|YP_002398246.1| putative transcriptional regulator [Escherichia coli ED1a] gi|218427598|emb|CAR08499.2| Putative transcriptional regulator [Escherichia coli ED1a] Length = 115 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLD 74 R IF + R A L+QK++ G A + I+ E G +I LA TL+ Sbjct: 14 REIFCKRLKEARTAAGLSQKKLGIAAGIDEFVASTRINRYEKGVHEADIHTAQKLAETLN 73 Query: 75 TPL 77 PL Sbjct: 74 VPL 76 >gi|206559412|ref|YP_002230173.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|206561186|ref|YP_002231951.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035450|emb|CAR51327.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037228|emb|CAR53149.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 206 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D + ER+ R +R T + R+G ++S IS +E ++ + LA Sbjct: 10 DDTGINERI--ARRVRGLRAVRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAA 67 Query: 72 TLDTPLWKLL 81 L L L Sbjct: 68 GLGVSLAGLF 77 >gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1] Length = 290 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 37/61 (60%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R +++K++ + G ++ ++++LE G++ ++++ + +LA +DT + L+ Sbjct: 14 LGDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTAITDLI 73 Query: 82 K 82 + Sbjct: 74 E 74 >gi|323481312|gb|ADX80751.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 306 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N +++RKE KLTQK++ TG +QS + + E G I+ + I L+ L+ Sbjct: 10 GNILKSLRKEQKLTQKKLSELTGISQSALVKYENGTRGISKNVDIALSKALNV 62 >gi|307244718|ref|ZP_07526820.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306491895|gb|EFM63946.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 71 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + + Q+E+ ++ IS +E G +I + LA D + + Sbjct: 5 NKLKEYRAQKGINQQELGKLVDVSRQTISLIERGDYNPSITLCLKLAKLFDVNVEDIF 62 >gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 155 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 32/80 (40%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M D + + + R+ R+ A+++ +++ G + ++S++E G Sbjct: 1 MVDEPDDMSSAARVVAGAAQDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERGLRK 60 Query: 61 INIDNMIILAHTLDTPLWKL 80 + D + +A L L Sbjct: 61 PSADVLAQIAKGLRVSSEVL 80 >gi|289168188|ref|YP_003446457.1| transcriptional regulator [Streptococcus mitis B6] gi|288907755|emb|CBJ22592.1| transcriptional regulator [Streptococcus mitis B6] Length = 287 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 I FR RKE L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 3 ILSEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|288574560|ref|ZP_06392917.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570301|gb|EFC91858.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 134 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ +TQ E+ + +++++ LE + T ++ + L L L+ Sbjct: 27 GLRIKLLRESLGMTQLELAEKADISRTYVQALEGNRKTPSVKLLGKLGDILKVDPGSLI 85 >gi|317128355|ref|YP_004094637.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473303|gb|ADU29906.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 73 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + R RKE ++ E+ TG ++S++S +E G K +I+ + + H+L+ P+ Sbjct: 1 MIGEIIRKKRKERGISLSELSRMTGVSKSYLSYIERGMKKNPSIEVIKRIFHSLNLPITM 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 471 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R+E LTQ + + S++++LE + I + ++ L P Sbjct: 7 GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLP 60 >gi|190570687|ref|YP_001975045.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356959|emb|CAQ54347.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 305 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 7 RYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDII 66 Query: 79 KLL 81 L+ Sbjct: 67 DLI 69 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQK++ + + IS E G+ I ++ + +A TL + LL+ Sbjct: 164 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 223 >gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] Length = 380 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + +LTQ+++ + G + +S E G + +I + +A + L +L+ Sbjct: 16 LGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLPTIASYFEITLDELM 75 >gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] Length = 137 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R RK +TQ ++ G + + E+G + + + +A L + Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNA 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169815025|gb|ACA89608.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3] Length = 356 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 + RK +LT+KE+ ++G ++ LETGK + +++ + LA L P Sbjct: 5 SKLAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSMETLETLAQVLGYP 58 >gi|146301187|ref|YP_001195778.1| helix-turn-helix domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155605|gb|ABQ06459.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101] Length = 335 Score = 46.9 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R++ L +E+ G Q+ IS+ E+G D +I L+ L+ L+ Sbjct: 5 LKNAREQKGLKTRELAQLAGIDQALISKFESGTRKPTKDQVIKLSQLLEIDYETLM 60 >gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020] Length = 233 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + RK A+LTQ E+ R+G Q+ +SE+E G + + Sbjct: 26 RLKQARKHARLTQAELAERSGIKQASVSEIERGLTRTS 63 >gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] Length = 150 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+E LTQ+++ ++ ++ I E G ++ LA LD + +L+ Sbjct: 6 NIKKFREEKNLTQQQLADKLYVSRQTICRWENGSRCPDLITAKKLALELDVSMDELI 62 >gi|328956459|ref|YP_004373845.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] gi|328672783|gb|AEB28829.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] Length = 183 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R R LTQ++I + +S E K+ NI + L+ + + Sbjct: 1 MSLGQSLREARAAKDLTQEDIAKVLYVTRQTVSRWEQNKTLPNIFVLQELSSLYGLSIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 110 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R+ L+Q+++ + ++ +++ E+ K +I N+ +A + L Sbjct: 3 MTLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 272 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK TQ+E+ + + IS+ ETG+S+ +I + LA L T + L+ Sbjct: 6 QNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISLLPDLAFALGTDINSLM 63 >gi|322812212|pdb|2XJ3|A Chain A, High Resolution Structure Of The T55c Mutant Of Cylr2. gi|322812213|pdb|2XJ3|B Chain B, High Resolution Structure Of The T55c Mutant Of Cylr2 Length = 66 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 34/62 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +NN + IR++ K++Q E+ ++ I+ +E K ++ + +A+ L+ PL + Sbjct: 1 MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDI 60 Query: 81 LK 82 + Sbjct: 61 FQ 62 >gi|289649967|ref|ZP_06481310.1| XRE family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|320321116|gb|EFW77260.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330988517|gb|EGH86620.1| XRE family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 221 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R A L+Q E+ + G Q IS+LETGK+ + ++ +A L+ Sbjct: 4 LADRLKIARAHAGLSQGELALKAGIKQPVISQLETGKNAGS-SFVVSIAKACGVNAEWLV 62 >gi|189219415|ref|YP_001940056.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] gi|189186273|gb|ACD83458.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] Length = 386 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 19 RMIFVNN-----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + +F+NN R R L+QKE+ + G ++ I +E G N + LA L Sbjct: 3 KKLFLNNTLSSPLRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVL 62 Query: 74 DTPLWKLL 81 + + L Sbjct: 63 EKTVEFLF 70 >gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424] Length = 533 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 4 RKRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RK+ + + + RK ++Q+E+ G +QSWI +LE G+ T Sbjct: 460 RKKQQRINKNPKSKISHRLSAEQILTARKRQGISQRELAQLIGKSQSWIRDLERGRFTAK 519 Query: 63 IDNMIILAHTLDTP 76 ++ + L L+ Sbjct: 520 PEDQLRLQKILNLS 533 >gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262] gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262] Length = 158 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ +Q ++ + GF++ ++ E G + ++ +A + L Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|328910532|gb|AEB62128.1| yqaE hypothetical protein [Bacillus amyloliquefaciens LL3] Length = 126 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +RK+ KL+QK + + G A+S IS E + + ++ A D LL Sbjct: 3 FGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNEREPDYATLVKFADFFDVSTDFLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|326407841|gb|ADZ64912.1| putative transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 64 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R EA+++Q ++ + G + I +E+GK ++ I + L L + Sbjct: 1 MKMARIEAEMSQADLADEVGVTRQTIGLIESGKFNPSLRLCIDICRVLKKTLNDIF 56 >gi|318060294|ref|ZP_07979017.1| DNA-binding protein [Streptomyces sp. SA3_actG] gi|318077735|ref|ZP_07985067.1| DNA-binding protein [Streptomyces sp. SA3_actF] Length = 279 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMII 68 + R +F + + RK A LTQ+++ G++ IS +E G+ +D Sbjct: 10 PEPSETLR-VFGSVVKAFRKRAGLTQEQLAEALGYSVDMISSIEQGRRMPQPDFVDATER 68 Query: 69 LAHTLDT 75 + Sbjct: 69 ELDAVGM 75 >gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 79 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R++R +TQ E+ R G + + +E G+ + +++ +A PL + Sbjct: 9 NSIRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFKVPLDDVF 67 >gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268] gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268] Length = 203 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE +TQ E+ + G + +S+ ETGKS + M+ L L + +LL Sbjct: 7 GKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKSMPDSGIMLELCGFLKINVNELL 65 >gi|154483010|ref|ZP_02025458.1| hypothetical protein EUBVEN_00708 [Eubacterium ventriosum ATCC 27560] gi|149736095|gb|EDM51981.1| hypothetical protein EUBVEN_00708 [Eubacterium ventriosum ATCC 27560] Length = 117 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N +++R + ++ E+ R +QS + +LE G + ++ID + L LDT Sbjct: 20 VGNTIKSLRIKKNVSVFELAYRAKISQSHVYQLEEGSNKMSIDLLYRLMDALDT 73 >gi|55820628|ref|YP_139070.1| transcriptional repressor [Streptococcus thermophilus LMG 18311] gi|55822519|ref|YP_140960.1| transcriptional repressor [Streptococcus thermophilus CNRZ1066] gi|55736613|gb|AAV60255.1| transcriptional repressor, putative [Streptococcus thermophilus LMG 18311] gi|55738504|gb|AAV62145.1| transcriptional repressor, putative [Streptococcus thermophilus CNRZ1066] Length = 72 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 16 LRERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 LR R N R + E +TQ ++ G + I +E GK ++ I + TL Sbjct: 2 LRRRGHVAKNLRLKVAQAEHDMTQGDLAEAVGATRQTIGLIEAGKCNPSLALCIAICKTL 61 Query: 74 DTPLWKLL 81 D L +L Sbjct: 62 DRTLDQLF 69 >gi|16126969|ref|NP_421533.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235758|ref|YP_002518195.1| MerR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13424327|gb|AAK24701.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964931|gb|ACL96287.1| transcriptional regulator, MerR family [Caulobacter crescentus NA1000] Length = 284 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + I R + R R+ LTQ + G + ++SELE GK T+ + ++ + Sbjct: 213 QVPQPIKSPRAL-GQLVRQARERMGLTQAAFADAAGVGRRFVSELENGKPTLELGKVMAV 271 Query: 70 AHTLDTPL 77 L Sbjct: 272 CAAAGLDL 279 >gi|85708070|ref|ZP_01039136.1| hypothetical protein NAP1_02505 [Erythrobacter sp. NAP1] gi|85689604|gb|EAQ29607.1| hypothetical protein NAP1_02505 [Erythrobacter sp. NAP1] Length = 262 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 22/40 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 F N +R++ +Q+E+ R +Q IS LETG+S Sbjct: 3 FGNILARLRRDRGWSQEELAMRADLSQRHISFLETGRSKP 42 >gi|331086080|ref|ZP_08335163.1| hypothetical protein HMPREF0987_01466 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407003|gb|EGG86508.1| hypothetical protein HMPREF0987_01466 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 106 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +R + ++ +++ G ++S+I+++E GK+ ++ + L Sbjct: 6 LFYKRLTQLRNKQGISARDMSLSLGQSESYINKIENGKALPSMSAFFYICDFLKIHPRDF 65 Query: 81 L 81 Sbjct: 66 F 66 >gi|307329171|ref|ZP_07608337.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] gi|306885201|gb|EFN16221.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length = 296 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +D R+R F R +R+ A LT E G Q S +E G++ ++ + + L Sbjct: 5 ADPTYRQRR-FGIEVRRLREAAGLTVGEAAQVVGMRQPHFSNVEAGRTGLSAERLQKLTE 63 Query: 72 TLD 74 L Sbjct: 64 ALG 66 >gi|291547752|emb|CBL20860.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 160 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+EA L+Q+E+ NR ++ IS E KS +++++++L+ L L+ Sbjct: 3 LGKQIKMHRQEAHLSQEELANRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDNLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|254975129|ref|ZP_05271601.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314256|ref|ZP_05355839.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516935|ref|ZP_05384611.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650038|ref|ZP_05396940.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|306519573|ref|ZP_07405920.1| putative phage repressor [Clostridium difficile QCD-32g58] Length = 113 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F F+ +R+E KLTQ E+ ++ T F +S IS+ E K I+ + A D Sbjct: 4 FGERFKQLREEKKLTQDELVSKFNKVYFTSFNKSTISQYENNKRKPEINILENWADFFDV 63 Query: 76 PLWKLL 81 + LL Sbjct: 64 SIDYLL 69 >gi|159898574|ref|YP_001544821.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891613|gb|ABX04693.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 84 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ N R++R EA +TQ+ + + G + + LE G+ +++ +A TP Sbjct: 2 AKLMIHNRIRHLRVEAHGMTQQALADHVGITRQTVIALEQGRYYPSLELAFRIALLFGTP 61 Query: 77 LWKLLK 82 L ++ + Sbjct: 62 LEQVFQ 67 >gi|114569052|ref|YP_755732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339514|gb|ABI64794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 68 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E +Q+ + + ++ ++ LETGK ++ LA P+ + Sbjct: 3 NQLRELRGEKGWSQQALADHLDVSRQTVNALETGKYDPSLPLAFKLARLFGEPIESIF 60 >gi|85701408|ref|YP_459993.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta] gi|89152506|ref|YP_512337.1| transcription regulator [Bacillus phage Fah] gi|76445729|gb|ABA42719.1| transcription regulator [Bacillus phage Fah] gi|76564034|gb|ABA46423.1| transcriptional regulator, putative [Bacillus phage Cherry] gi|81097471|gb|ABB55414.1| putative transcriptional regulator [Bacillus phage Gamma] gi|83658644|gb|ABC40428.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta] Length = 118 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +R+E LTQ ++ G +S+ ETG + + + A L P+ LL Sbjct: 6 FKDRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLL 65 >gi|75761940|ref|ZP_00741861.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898416|ref|YP_002446827.1| DNA-binding protein [Bacillus cereus G9842] gi|74490571|gb|EAO53866.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540574|gb|ACK92968.1| DNA-binding protein [Bacillus cereus G9842] Length = 67 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ + G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 IF 62 >gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 369 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E +TQ+++ + G +S+ ET ++ +I + LA+ D Sbjct: 1 MTIGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAPDISQLPALANFFDVTTDH 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|227820908|ref|YP_002824878.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227339907|gb|ACP24125.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 469 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E IF R IR +LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|254474485|ref|ZP_05087871.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214028728|gb|EEB69563.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 204 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 28/56 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK+ +T + + + +G + ++S++E +T ++ + +A L+ L Sbjct: 12 VGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLAQIAAALEVGL 67 >gi|241203160|ref|YP_002974256.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857050|gb|ACS54717.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 469 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|108758128|ref|YP_635571.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108462008|gb|ABF87193.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 126 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R LTQ ++ R G A LE G ++ N+ L L+ P +L Sbjct: 8 MLGAASRAARVRMGLTQADVAERIGMASEVYGRLERGHMLPSVQNLRRLCMVLNVPPHEL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|26989844|ref|NP_745269.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984749|gb|AAN68733.1|AE016505_6 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 180 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + +TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60 >gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152] gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 201 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +RK+ + T E+ TG + S +S LE+G ++ ++ LA L + Sbjct: 6 EAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDE 65 Query: 80 LL 81 L+ Sbjct: 66 LV 67 >gi|315640950|ref|ZP_07896045.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315172537|gb|EFU16554.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX1346] gi|315483301|gb|EFU73802.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 88 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R+EA LTQ E+ + QS I+ +E G ++ D + +A L L Sbjct: 33 LYHAREEAGLTQAELAQKAHTTQSTIARIERGD-NVSFDKLDDIARALGKKLV 84 >gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 185 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 33/60 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +RK ++Q+E+ + G ++ +S+ E+G+S +++ +I ++ +LK Sbjct: 4 ADRIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQSLPDLEKIITMSDYFGVTTDYILK 63 >gi|302339845|ref|YP_003805051.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] gi|301637030|gb|ADK82457.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] Length = 393 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +N + R + KLTQ ++ +G + I +E K + + ++ LD L L+KP Sbjct: 31 SNIKRYRSKKKLTQHDLSELSGISLPAIKNIERKKGLPRTNTLRAISKALDCRLQDLVKP 90 >gi|296115539|ref|ZP_06834169.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295977934|gb|EFG84682.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 97 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 6 RDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R P R F+ R+ LTQ + R G QS++++ ETG+ I++ Sbjct: 13 RSIPAELGPWWRAAQFFIRRSLLIAARRGKGLTQATLAERLGKPQSYVAKYETGERRIDV 72 Query: 64 DNMIILAHTLDTPLWKLL 81 + + + +L Sbjct: 73 IEFLDITTAIGLDAADIL 90 >gi|229550955|ref|ZP_04439680.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229315670|gb|EEN81643.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 290 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + F + IR +TQ ++ + ++ +S E ++ +++ + +A Sbjct: 82 KPSEVVILNFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARI 141 Query: 73 LDTPLWKLL 81 L L+ Sbjct: 142 FSVSLDTLI 150 >gi|217960750|ref|YP_002339314.1| DNA-binding protein [Bacillus cereus AH187] gi|217064586|gb|ACJ78836.1| DNA-binding protein [Bacillus cereus AH187] Length = 67 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F+ + R + +TQ+++ G + IS LE GK ++ +A L + + + Sbjct: 1 MAFITRIKEYRAKLNMTQEDLAKNVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|149924794|ref|ZP_01913136.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149814326|gb|EDM73926.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 119 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 11 LSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 ++ R I F + R++R LTQ+ + R+ + I LE G + +++ + Sbjct: 6 SAEPAEVVRKIDPKQFGRHLRSLRNARGLTQELLAERSDLSSDTIRRLEAGTFSPSLNTL 65 Query: 67 IILAHTLDTPLWKLL 81 +A L L L Sbjct: 66 AGVASGLRLRLSTLF 80 >gi|149279478|ref|ZP_01885608.1| hypothetical protein PBAL39_16801 [Pedobacter sp. BAL39] gi|149229771|gb|EDM35160.1| hypothetical protein PBAL39_16801 [Pedobacter sp. BAL39] Length = 71 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +R + ++Q + R G +Q+ S++E G+ + ++ + +A L+ + L Sbjct: 5 IVNQKIKVLRNKLGISQTMMAERLGISQNAFSKIELGQIDLTLNRLYKIADVLEVDVLDL 64 Query: 81 LK 82 ++ Sbjct: 65 VR 66 >gi|217975318|ref|YP_002360069.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500453|gb|ACK48646.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 104 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE----LETGKSTINIDNMIILAHTLDTPL 77 + R +A +TQ ++ + G Q+ S E G+ T +I+ + +A L PL Sbjct: 9 KRLKEARTKAGITQADLGAKIGIHQNSASSRMNHYELGRHTPDINTLQRIADELGVPL 66 >gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 118 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +RK + ++Q + + G + E G ++ +I ++ D Sbjct: 5 RSFVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 64 Query: 79 KLL 81 +LL Sbjct: 65 ELL 67 >gi|167036464|ref|YP_001664042.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114890|ref|YP_004185049.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855298|gb|ABY93706.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927981|gb|ADV78666.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 69 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + KLTQKE+ G +IS++E G ++ I +A+ +T + ++ Sbjct: 2 NKLKELRIKYKLTQKELAKNLGVTPDYISQIERG-RIPGMETAIKIANFFNTTVDEIF 58 >gi|309779758|ref|ZP_07674514.1| DNA-binding protein [Ralstonia sp. 5_7_47FAA] gi|308921457|gb|EFP67098.1| DNA-binding protein [Ralstonia sp. 5_7_47FAA] Length = 72 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 EA LTQ ++ + G QS++S++E G+ +++ + TP +++K Sbjct: 20 EAGLTQVQLAEKLGKGQSYVSKVERGEQYLDVLEFVEWCEACSTPSEQVIK 70 >gi|307705208|ref|ZP_07642078.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621230|gb|EFO00297.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 73 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQK+I F S +++E G+ + D ++ L++ D LL Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHALTEDVLVTLSNFYDVSTDYLL 60 >gi|302523760|ref|ZP_07276102.1| predicted protein [Streptomyces sp. AA4] gi|302432655|gb|EFL04471.1| predicted protein [Streptomyces sp. AA4] Length = 334 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 33/71 (46%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 ++ ++ + R N R+ R AK+TQ+++ G Q ++++E+G + + Sbjct: 45 PGEQGEMASTVTSRRKQLGNELRHARNAAKMTQQQVAEVLGCTQGKVNKIESGAVGVKLG 104 Query: 65 NMIILAHTLDT 75 ++ + + Sbjct: 105 DVRTMLNAFGI 115 >gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 122 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++R+ ++Q+E+ G ++ IS E G+ + + +A+ Sbjct: 2 EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVS 60 >gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK +Q ++ G + S ETGK ++ +A T LL Sbjct: 12 FSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLL 71 >gi|269126360|ref|YP_003299730.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311318|gb|ACY97692.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 284 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 R+R + R +R+ A L E+ G++ + +S LETG++TI + L Sbjct: 3 DSPTARKRQL-GIQLRKLREAAGLRNAELAELMGWSTTKMSRLETGQTTITAAEVEQLCD 61 Query: 72 TLDTPLWKL 80 L L Sbjct: 62 HLGVEDVDL 70 >gi|256544578|ref|ZP_05471950.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256399467|gb|EEU13072.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 132 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLW 78 M F + R +R+ LTQ+E+ G + IS E G+S + LA LDT Sbjct: 1 MSFESKLRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYRKIYDKLAEVLDTSHD 60 Query: 79 KLLK 82 L+ Sbjct: 61 YLVT 64 >gi|229131388|ref|ZP_04260287.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] gi|229165389|ref|ZP_04293175.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228618093|gb|EEK75132.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228652079|gb|EEL08017.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] Length = 83 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 14 QVRRNGVKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGT 73 Query: 76 PLWKLL 81 + KL Sbjct: 74 TVDKLF 79 >gi|262198866|ref|YP_003270075.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082213|gb|ACY18182.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 139 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK L Q+++ + G + + S +E G + ++D I + L Sbjct: 7 KSMGRAAREARKALGLIQEQVADLLGVSPEFYSRIERGVAHPSLDTFIGMVEVLKVDADV 66 Query: 80 LL 81 L+ Sbjct: 67 LI 68 >gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016] gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 375 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 25 NFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R RKE +TQ+++ + G +++ +S+ E+G S +I + LA + + +L Sbjct: 8 NIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDEL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 115 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R + KL Q+++ + G ++ + E GK + + ++ +A+ + LL Sbjct: 11 FGDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQGKREPDYETLLKIANFFGVSVDYLL 70 Query: 82 K 82 Sbjct: 71 T 71 >gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] Length = 132 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I IRK +T K++ + +Q IS E G I++D +I L + LD P+ + Sbjct: 31 LIIGRQIYFIRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPIDQ 90 Query: 80 LL 81 Sbjct: 91 FF 92 >gi|197250724|ref|YP_002146366.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200389331|ref|ZP_03215942.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|197214427|gb|ACH51824.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199601776|gb|EDZ00322.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 200 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + ++ Sbjct: 22 VSQRIKQFRSQKKISLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADVV 81 >gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521] gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521] gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 198 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPL 77 R I + R+E L+ +++ RTGF S + ETG I ID LA L+ Sbjct: 8 REIVAR-IKKRREELNLSYEDLSKRTGFGSSTLQRYETGAINRIPIDRFEELAKGLEIEP 66 Query: 78 WKLL 81 +KL+ Sbjct: 67 YKLM 70 >gi|153940900|ref|YP_001392913.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936796|gb|ABS42294.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320889|gb|ADG01267.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 220 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + LTQK++ + G A+++I+E+E+G+ IN M ++ L Sbjct: 7 KIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57 >gi|153955107|ref|YP_001395872.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347965|gb|EDK34501.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 372 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 25 NFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R RKE +TQ+++ + G +++ +S+ E+G S +I + LA + + +L Sbjct: 5 NIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDEL 64 Query: 81 L 81 L Sbjct: 65 L 65 >gi|88657852|ref|YP_507902.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] gi|88599309|gb|ABD44778.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] Length = 213 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 6 RDEPHLSDAILRE--RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +D + + I + R ++Q ++ N+ G + + E G + I I Sbjct: 61 KDLKNSTTKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVI 120 Query: 64 DNMIILAHTLDTPLWKLL 81 + LA L+ + ++ Sbjct: 121 SRLYQLASVLNVEVRDIM 138 >gi|68171793|ref|ZP_00545135.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] gi|13511828|gb|AAC02808.2| hypothetical transcriptional regulator [Ehrlichia chaffeensis] gi|67998784|gb|EAM85494.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] Length = 213 Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%) Query: 6 RDEPHLSDAILRE--RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 +D + + I + R ++Q ++ N+ G + + E G + I I Sbjct: 61 KDLKNSTTKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVI 120 Query: 64 DNMIILAHTLDTPLWKLL 81 + LA L+ + ++ Sbjct: 121 SRLYQLASVLNVEVRDIM 138 >gi|325660971|ref|ZP_08149598.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472478|gb|EGC75689.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] Length = 181 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+E LTQ+++ ++ ++ + E G ++ LA LD + +L+ Sbjct: 37 NIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDELI 93 >gi|307707493|ref|ZP_07643975.1| transcriptional activator [Streptococcus mitis NCTC 12261] gi|307616445|gb|EFN95636.1| transcriptional activator [Streptococcus mitis NCTC 12261] Length = 287 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|307327218|ref|ZP_07606406.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306887109|gb|EFN18107.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 200 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 E D L ER+I R R+ A + + R G +++ +S++E ++ ++ + Sbjct: 3 AEAGDDDKAL-ERII-AVRAREYRQAAGASVGGMAQRVGISKAMLSKIENAQTACSLTTL 60 Query: 67 IILAHTLDTPLWKLLK 82 LA L P+ L + Sbjct: 61 SRLARGLGVPVTALFR 76 >gi|307332662|ref|ZP_07611696.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306881694|gb|EFN12846.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 398 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+E LTQ+ + R ++S +S++E G+ + + A L LL Sbjct: 10 GARIARTRRERDLTQQGLAMRANVSKSLLSKVECGQRPASPSLIAACARALSVTTSDLL 68 >gi|257484266|ref|ZP_05638307.1| hypothetical protein PsyrptA_13492 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008336|gb|EGH88392.1| hypothetical protein PSYTB_01194 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 133 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + IRK L+Q ++ + +++++S+LE G+S+ ++ M L+ L Sbjct: 1 MPIKNAIAAALKAIRKARGLSQYKLAEVS--SRTYVSKLERGQSSPTLEMMSTLSSPLGL 58 Query: 76 PL 77 Sbjct: 59 SP 60 >gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 68 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R R++ TQ ++ R G ++ I+ +E G+ ++ LA +T + L P Sbjct: 3 NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYDPSLPLAFKLARVFETTIEDLFFP 62 >gi|166030550|ref|ZP_02233379.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] gi|166029712|gb|EDR48469.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] Length = 114 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 L+ + M N + R TQ+EI + G A+S + E+ K +I + Sbjct: 16 HKLTKEKTGDSMQVGLNIKIKRIGRGYTQEEIADAIGVARSTYTRYESDKRLPDIYKLCA 75 Query: 69 LAHTLDTPLWKLL 81 LA D L L+ Sbjct: 76 LADYFDVSLDDLV 88 >gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 69 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R LTQ+E+ ++ G + + +E GK + +++ +A T + ++ Sbjct: 3 NKLKVLRAINNLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAALFKTTIEEVFT 61 >gi|126739214|ref|ZP_01754908.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719831|gb|EBA16539.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 462 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 31/64 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R+ +LTQK+ + G + +++++E ++ ++ LA Sbjct: 3 TQKLYAGAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|148655090|ref|YP_001275295.1| helix-turn-helix domain-containing protein [Roseiflexus sp. RS-1] gi|148567200|gb|ABQ89345.1| helix-turn-helix domain protein [Roseiflexus sp. RS-1] Length = 119 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ER + R+ +LTQ E+ +R G + S+IS +E G+S+ I + LA Sbjct: 2 PSFNER--VGEVIKRKRQRDRLTQAELGSRIGVSGSYISSIENGQSSARIAEIEALATVF 59 Query: 74 DTPLWKLL 81 T ++LL Sbjct: 60 RTTAFELL 67 >gi|89101060|ref|ZP_01173900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084233|gb|EAR63394.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN +RK+ +Q + R G ++ I +E GK + ++ +A T DT + + Sbjct: 3 NNLAELRKKHGFSQDRLAVRLGVSRQTIISIEKGKYSPSLPLAFQIAKTFDTTIEHIF 60 >gi|95928598|ref|ZP_01311345.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95135388|gb|EAT17040.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 82 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK L+Q + G Q +S++E G+S +D + L LD L Sbjct: 15 LRAARKRKGLSQTKAGKSVGIDQPTLSKIERGESNARLDTLFRLLAALDMEL 66 >gi|332665558|ref|YP_004448346.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332334372|gb|AEE51473.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 85 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I +N R R + Q + G + W +LE G+ +D ++++A + + Sbjct: 8 KIVASNVRIWRGHLGIKQHVVAAELGVCRKWYGDLENGRVRFKVDQLLVIAQLFNISPGE 67 Query: 80 LLK 82 K Sbjct: 68 FFK 70 >gi|323706042|ref|ZP_08117612.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534656|gb|EGB24437.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 431 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IRK K+ QKE++++ + +IS +E+G+ST++ + +A L+ Sbjct: 7 GERLKKIRKMLKMKQKELQDK-NITRGFISMIESGRSTMSKETASAIAKKLNK 58 >gi|322806889|emb|CBZ04459.1| putative DNA-binding protein [Clostridium botulinum H04402 065] Length = 102 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + IR +T E+ G QS IS++E K I I+++ LA+T + Sbjct: 43 KEIRINKNITTYELSELIGIPQSTISKIENSKRKIKIESLQKLANTFHVSI 93 >gi|310764970|gb|ADP09920.1| RstR1 [Erwinia sp. Ejp617] gi|310764977|gb|ADP09927.1| RstR1 [Erwinia sp. Ejp617] Length = 122 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F F +RK+ LTQ ++ ++ G + + E+G++ ++D + +A T Sbjct: 13 MSFSARFLQLRKQHGLTQPQMADKVGIHLTQVRRYESGETQPSLDILKRIAVTFSVSADW 72 Query: 80 LL 81 L+ Sbjct: 73 LI 74 >gi|291279452|ref|YP_003496287.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754154|dbj|BAI80531.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 193 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E M + +R++ +LT +++ +G + ++S++E + + ++ +A L+ + Sbjct: 11 ELMTIGKKVQELRQKKQLTLRQLSKLSGCSLGFLSQVERDLVSPTVSSLKKIADALEVNI 70 Query: 78 WKLL 81 Sbjct: 71 MHFF 74 >gi|288904450|ref|YP_003429671.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306830483|ref|ZP_07463653.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977446|ref|YP_004287162.1| hypothetical protein SGGBAA2069_c02460 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731175|emb|CBI12723.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304427508|gb|EFM30610.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177374|emb|CBZ47418.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 208 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK+ L+Q E N ++ +S E GKS +++ +I ++ + L+K Sbjct: 2 NINELRKKNNLSQDEFANLFHVSRQTVSSWENGKSYPDVEMLIKISQHFGISVDDLVK 59 >gi|228990754|ref|ZP_04150719.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] gi|228769280|gb|EEM17878.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] Length = 404 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +LTQ ++ + +S +S++E GK+T ++ + LA L+ LL Sbjct: 4 LGEKIKALRKEKRLTQTQLAG-SELTKSMLSQIENGKATPSMKTLQYLASQLECEASFLL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|169349918|ref|ZP_02866856.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] gi|169293486|gb|EDS75619.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] Length = 194 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R++ ++Q+E+ + ++ IS ET KS ++ ++I L++ + L ++ Sbjct: 4 GSQIKKFREQQNISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDDFIR 63 >gi|119944087|ref|YP_941767.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119862691|gb|ABM02168.1| transcriptional regulator, XRE family [Psychromonas ingrahamii 37] Length = 518 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 S ++R+ RN+RK LT ++ R + S++S +E GK D Sbjct: 4 SKTLIRQSHFLGTKIRNLRKRNNLTLDDLSARCVKLEPECAPSVSYLSMIERGKRVPGED 63 Query: 65 NMIILAHTLDTPL 77 + ++A + Sbjct: 64 MLEVIAQVFQKNM 76 >gi|146299913|ref|YP_001194504.1| XRE family plasmid maintenance system antidote protein [Flavobacterium johnsoniae UW101] gi|146154331|gb|ABQ05185.1| plasmid maintenance system antidote protein, XRE family [Flavobacterium johnsoniae UW101] Length = 136 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N IR+ + Q+ + G Q +S +E G TI D + +A L Sbjct: 11 GRNISRIRELRGMKQEALAFAIGVTQQTVSNIE-GSETIEDDKLDAIAEVLGVS 63 >gi|54026748|ref|YP_120990.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018256|dbj|BAD59626.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 392 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 R++RK LTQ+E+ + +G + S I +LE G + ++ LA L Sbjct: 5 LGERVRSVRKRRGLTQRELADASGLSVSLIRKLEQGDRPNVRVETARKLAVALRV 59 >gi|332199304|gb|EGJ13382.1| transcriptional activator [Streptococcus pneumoniae GA41317] Length = 303 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|307250892|ref|ZP_07532820.1| Helix-turn-helix domain protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857142|gb|EFM89270.1| Helix-turn-helix domain protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 134 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR+ + +Q+++ + + + +++E G++ + +D + +A LD + +L++ Sbjct: 5 EKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDVVELIQ 63 >gi|306826725|ref|ZP_07460027.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] gi|304431014|gb|EFM34021.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] Length = 195 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|289449795|ref|YP_003474502.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184342|gb|ADC90767.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 66 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK+ K+TQ+E+ N G + I+ +ETGK ++ +A D + ++ Sbjct: 3 NTISQLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIF 60 >gi|262197418|ref|YP_003268627.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080765|gb|ACY16734.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 140 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R LTQ+ R G + + + +E G + ++ + +A + L+ Sbjct: 10 GRTMRRARTAQGLTQERAAERIGVSVEFYARIERGNAHPSVPTLYRIASAFEVSADALI 68 >gi|221201483|ref|ZP_03574522.1| repressor protein CI [Burkholderia multivorans CGD2M] gi|221207961|ref|ZP_03580967.1| repressor protein CI [Burkholderia multivorans CGD2] gi|221172146|gb|EEE04587.1| repressor protein CI [Burkholderia multivorans CGD2] gi|221178751|gb|EEE11159.1| repressor protein CI [Burkholderia multivorans CGD2M] Length = 132 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R RK A+LTQK++ ++ G Q+ ISELE + + +A L Sbjct: 6 YGKRLRAARKGARLTQKQLADKVGLKQATISELENDEYDGSAKT-AAIADVLGV 58 >gi|77457536|ref|YP_347041.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381539|gb|ABA73052.1| putative DNA-binding regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 180 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + ++G +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF 60 >gi|330508079|ref|YP_004384507.1| hypothetical protein MCON_2169 [Methanosaeta concilii GP-6] gi|328928887|gb|AEB68689.1| conserved domain protein [Methanosaeta concilii GP-6] Length = 74 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R LTQ+E+ + G + + +E GK + ++D +A + ++ Sbjct: 3 NRVRVYRAINDLTQEELAKKIGVTRQTVLAIEKGKYSPSLDLAFKMAKIFGVKIEEIF 60 >gi|302343975|ref|YP_003808504.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301640588|gb|ADK85910.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 104 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R++ + R +R +T +++ + G S IS++E GK +++ + + +A L Sbjct: 40 DRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGKRSMSTELLKKMAEALRVD 99 Query: 77 LWKLL 81 LL Sbjct: 100 AELLL 104 >gi|260427221|ref|ZP_05781200.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421713|gb|EEX14964.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E LT ++ + +G +++ +S LE + + + + L + +LL Sbjct: 11 RRLAQLRAERGLTLDQLASASGVSRAALSRLEKAEVSPTAEVLGKLCTAYGLTMSRLL 68 >gi|256061267|ref|ZP_05451417.1| hypothetical protein Bneo5_12993 [Brucella neotomae 5K33] Length = 470 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|228909080|ref|ZP_04072909.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228850588|gb|EEM95413.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 108 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R++RK+ +TQKE+ + ++S I E + + + +I +A D Sbjct: 2 KTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFDVSTDF 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 142 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 1 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] Length = 325 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK+ L+Q+++ ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSIPDIEKIVNLSEFFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 1 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|90309028|gb|ABD93637.1| hypothetical transcriptional regulator [Ehrlichia muris] Length = 216 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 K+D + A + R ++Q ++ + G + + E G + I I Sbjct: 64 KKDLKNCIKARPHPVDECVGKEIKRQRIMRGMSQNQLATKLGITFQQVQKYEKGTNRIVI 123 Query: 64 DNMIILAHTLDTPLWKLL 81 + LA L+ + ++ Sbjct: 124 SRLYQLATVLNVEVRDIM 141 >gi|49081770|gb|AAT50285.1| PA0535 [synthetic construct] Length = 185 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 26/51 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +RK +T + + + + +S++E G S +D+++ ++ L P Sbjct: 15 VRELRKRKGITLQALADGIRRSVGLVSQVERGLSRPAVDDLVAISQVLGVP 65 >gi|83593377|ref|YP_427129.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576291|gb|ABC22842.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 188 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ L+Q+E+ R G IS +E +S+ ++ ++ + + L + Sbjct: 5 VGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQSSPSVASLRKVLQGIPMTLAEFF 64 >gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4] gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4] Length = 479 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R+E LTQ G + S++++LE + ++ ++ Sbjct: 2 GARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGV 54 >gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 165 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G+ I+ +I L+ LL Sbjct: 3 LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62 >gi|283785313|ref|YP_003365178.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282948767|emb|CBG88362.1| putative transcriptional regulator [Citrobacter rodentium ICC168] Length = 178 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLKTLRSQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFI 67 Query: 82 KP 83 P Sbjct: 68 AP 69 >gi|258516791|ref|YP_003193013.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780496|gb|ACV64390.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 109 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK KLT +++ + + +Q IS LE + + +++ + + L+ L Sbjct: 10 GKRIKELRKTRKLTTRQLADLSDISQPVISRLENNERSADVELIKRICKALEITLQDFFT 69 >gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] Length = 65 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LTQ+E+ G + I +E GK ++ +A + + Sbjct: 3 NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGLKIEDVF 60 >gi|268592014|ref|ZP_06126235.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312406|gb|EFE52859.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 93 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R E LT E+ +Q IS E G+S I+ID++ I L Sbjct: 22 AKYLKSARIEKSLTGTELGKLLNLSQQQISRYENGQSAISIDSLHIYLKALGK 74 >gi|225375839|ref|ZP_03753060.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] gi|225212274|gb|EEG94628.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] Length = 142 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + +RK TQ + G + S ETGK T + + LA + + Sbjct: 4 KLLPQKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDD 63 Query: 80 LL 81 LL Sbjct: 64 LL 65 >gi|70728777|ref|YP_258526.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343076|gb|AAY90682.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 180 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + ++G +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF 60 >gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 117 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +RK + ++Q + + G + E G ++ +I ++ D Sbjct: 5 RSFVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 64 Query: 79 KLL 81 +LL Sbjct: 65 ELL 67 >gi|223932164|ref|ZP_03624168.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899145|gb|EEF65502.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 74 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+IR++ LTQ+ + + +S +++E G+ T++ + +I L++ + LL Sbjct: 3 RRIRDIREDHDLTQQNVSDYLSITRSAYAKIERGEHTLSAEVLIQLSNLYNVSTDYLL 60 >gi|325262061|ref|ZP_08128799.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033515|gb|EGB94792.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +RKE +TQ + ++ + E GK +I +I +A + L L+ Sbjct: 8 GRNIRRLRKERNMTQLHLAKILHLHRATLCSYEIGKRLPDIFILISIADAFEVSLDILV 66 >gi|320324207|gb|EFW80287.1| Fis family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328631|gb|EFW84632.1| Fis family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 155 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+ I G + ++S+LE GKS+ +D + L+ L+ Sbjct: 9 LRALRAHKGLTQESIPE--GSNRQYLSQLEHGKSSPTLDKLQDLSEAYGASPLLLV 62 >gi|313498869|gb|ADR60235.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 180 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + +TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60 >gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1] gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1] gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1] gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 182 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 71 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R IR+ L QK + +TG +Q +S+ ETGK+ ID +A LD + L Sbjct: 6 RIREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDL 61 >gi|195978222|ref|YP_002123466.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974927|gb|ACG62453.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 69 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK+ +TQ+E+ N ++ I LE G+ +I +A D + ++ Sbjct: 3 NRLEEIRKQKGITQEELANALEVSRQTIGSLENGRYNPSITLAFKIARFFDLTIEQIF 60 >gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 134 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78 M F + + +R++ LTQ E+ ++ G IS ET G D +A + + Sbjct: 1 MSFGSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60 Query: 79 KLLK 82 LL Sbjct: 61 FLLT 64 >gi|163790666|ref|ZP_02185094.1| hypothetical protein CAT7_11435 [Carnobacterium sp. AT7] gi|159874114|gb|EDP68190.1| hypothetical protein CAT7_11435 [Carnobacterium sp. AT7] Length = 91 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 27/52 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++R+E +TQKE+ + +Q+ I+ +E ++ + +A L+ L Sbjct: 27 LASLRREKNITQKELAEKVHVSQAQIARVENFSYAPSLKTITKIADGLNLEL 78 >gi|23502065|ref|NP_698192.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|23348021|gb|AAN30107.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] Length = 470 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|148547808|ref|YP_001267910.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148511866|gb|ABQ78726.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 180 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + +TG +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60 >gi|99081720|ref|YP_613874.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038000|gb|ABF64612.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 491 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R LTQK+ + G + +++++E ++ ++ LA Sbjct: 32 TQKLYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLD 91 Query: 77 LWKL 80 + +L Sbjct: 92 VTEL 95 >gi|325523992|gb|EGD02186.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 205 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R T + R+G ++S IS +E ++ + LA L L L Sbjct: 19 ARRVRDLRTGQGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLF 77 >gi|312960098|ref|ZP_07774610.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|311285592|gb|EFQ64161.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 193 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E ++RK KLT ++ + + ++S++E G S + ++ ++H LD Sbjct: 12 QEELATLAALIHDLRKHKKLTLAQLAQKIERSVGFVSQVERGLSRPTVADLTAISHALDV 71 Query: 76 P 76 P Sbjct: 72 P 72 >gi|331660882|ref|ZP_08361814.1| DNA-binding protein [Escherichia coli TA206] gi|315298933|gb|EFU58187.1| helix-turn-helix protein [Escherichia coli MS 16-3] gi|331051924|gb|EGI23963.1| DNA-binding protein [Escherichia coli TA206] Length = 74 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R R +TQ+E+ G QS+I+++E G+ ++I + L + Sbjct: 8 EYQMVIKALREARVAGHITQEELGKALGRPQSFIAKVENGERRLDIVEFVHLCRLVGIDP 67 Query: 78 WKLL 81 ++ Sbjct: 68 VSII 71 >gi|257083082|ref|ZP_05577443.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256991112|gb|EEU78414.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 257 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQ++I + +S+ ETG+S +IDN+++L+ + + +L++ Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63 >gi|256960587|ref|ZP_05564758.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384412|ref|ZP_06630293.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389773|ref|ZP_06634215.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312906563|ref|ZP_07765564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312910745|ref|ZP_07769584.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951083|gb|EEU67715.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078260|gb|EFE15624.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291080931|gb|EFE17894.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310627432|gb|EFQ10715.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311289008|gb|EFQ67564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 257 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQ++I + +S+ ETG+S +IDN+++L+ + + +L++ Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63 >gi|322421967|ref|YP_004201190.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128354|gb|ADW15914.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 305 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI--DNMIILA 70 L I R IR+ KLTQ + N G IS E +I DN LA Sbjct: 10 KVPLPSVAIDGIRIRTIRETKKLTQLYVANVVGVTTDTISRWEN-NRYPSIKRDNAQKLA 68 Query: 71 HTLDTPLWKLLKP 83 L+ L ++L+P Sbjct: 69 DALEVTLEEILQP 81 >gi|256372684|ref|YP_003110508.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] gi|256009268|gb|ACU54835.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 352 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 28/55 (50%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ L+Q+++ + G ++ ++ +E+G ++ + LA + +L Sbjct: 6 RRLRRVRGLSQQQVADALGISRQAVAGIESGAFEPSLPVAMALARFFGVSVEELF 60 >gi|221642312|ref|YP_002533399.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1] gi|221243247|gb|ACM15956.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1] Length = 66 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q ++ N+ G + I LE GK ++ +A L P+ L Sbjct: 6 RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62 >gi|149186994|ref|ZP_01865302.1| hypothetical protein ED21_25131 [Erythrobacter sp. SD-21] gi|148829383|gb|EDL47826.1| hypothetical protein ED21_25131 [Erythrobacter sp. SD-21] Length = 190 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IRKE +T ++ + LETG +++ M L L L+ Sbjct: 3 NRIRDIRKEKGMTLADLAEACTPPTTPQTVGRLETGMRNLSLKWMERLGAALGVEPEMLV 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|70731387|ref|YP_261128.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68345686|gb|AAY93292.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 65 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R +R +Q E+ R ++ ++ +ETG+ ++ +A + P+ + P Sbjct: 3 NQLRELRTRQGWSQAELATRLEVSRQTVNAIETGRYDPSLPLAFKIARAFEMPIESIFSP 62 >gi|330819542|ref|YP_004348404.1| helix-turn-helix domain protein [Burkholderia gladioli BSR3] gi|327371537|gb|AEA62892.1| helix-turn-helix domain protein [Burkholderia gladioli BSR3] Length = 304 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A+L +++ R +++ + +LE G+ + ID + LA L LL Sbjct: 22 GERLRAYRMAAELRSEDLAERLDISRAAVYKLERGEI-VKIDTLERLATLFGVSLANLL 79 >gi|307308409|ref|ZP_07588113.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306901012|gb|EFN31620.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 470 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E IF R IR +LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|282883282|ref|ZP_06291880.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281296912|gb|EFA89410.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 67 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + NN IRK+ +TQK+I N G +IS+LE G S ++ ++ L+ + +L Sbjct: 1 MLKNNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEISRFLECGVEEL 60 >gi|261325274|ref|ZP_05964471.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261301254|gb|EEY04751.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 472 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|229060141|ref|ZP_04197511.1| Transcriptional regulator, XRE [Bacillus cereus AH603] gi|228719181|gb|EEL70791.1| Transcriptional regulator, XRE [Bacillus cereus AH603] Length = 107 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RKE KL Q+++ + G A++ + E G + + +I LA + + L Sbjct: 1 MFGTRLHTLRKERKLRQEDMAKQLGIARTTYAMYEQGNREPDYNTLIKLATFFEVSIDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + R EA LTQ ++ G + I+ +E G + + LA L T + L + Sbjct: 8 NALKAARTEAGLTQADLAELVGVTRKTINTVENGVFVPSTVLSLKLARALGTSVEALFQ 66 >gi|30021440|ref|NP_833071.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|206969324|ref|ZP_03230279.1| DNA-binding protein [Bacillus cereus AH1134] gi|218232223|ref|YP_002368049.1| DNA-binding protein [Bacillus cereus B4264] gi|29896994|gb|AAP10272.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|206736365|gb|EDZ53523.1| DNA-binding protein [Bacillus cereus AH1134] gi|218160180|gb|ACK60172.1| DNA-binding protein [Bacillus cereus B4264] Length = 66 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTRIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 IF 62 >gi|15964466|ref|NP_384819.1| hypothetical protein SMc00769 [Sinorhizobium meliloti 1021] gi|15073643|emb|CAC45285.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 470 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E IF R IR +LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|323704452|ref|ZP_08116031.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536518|gb|EGB26290.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 132 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + LTQK++ + QS +S+LE+G+ I+ + ++ L Sbjct: 41 KIYEFRIKNDLTQKQLAEKLEIKQSMVSKLESGQYNPTIEQLWKISKKLG 90 >gi|320176833|gb|EFW51862.1| Putrescine utilization regulator [Shigella dysenteriae CDC 74-1112] Length = 185 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S I +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAICTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|304438972|ref|ZP_07398895.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372638|gb|EFM26221.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 68 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK +TQ+E+ N ++ I LE G+ +I +A + + Sbjct: 3 NRLEEIRKSRGITQEELANILEVSRQTIGSLENGRYNPSIILAFKIAKFFKLTIEDIF 60 >gi|295108150|emb|CBL22103.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 110 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R + L+QKE+ + + IS+ ET K D ++ L LL Sbjct: 3 FGNRLRKLRNQNGLSQKEVAIAISVSVNAISQYETNKRFPEPDVLVRLCKYYKISADYLL 62 >gi|288905863|ref|YP_003431085.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732589|emb|CBI14161.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 416 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 22/49 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+ L Q + G +QS IS E GK T++++ + Sbjct: 6 LQRFRKKTGLNQSDFAKTVGISQSLISRYELGKKTLSVETFHKIKSAFG 54 >gi|260102595|ref|ZP_05752832.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083622|gb|EEW67742.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 292 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A LTQ E+ ++S+ S++E G I+ D ++ + + Sbjct: 4 GKLLRETRLVAGLTQTEMAAVA-ISESFYSKVERGVHNIDADTLVEVLKANHINPVQFF 61 >gi|238917699|ref|YP_002931216.1| hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC 27750] gi|238873059|gb|ACR72769.1| Hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC 27750] Length = 213 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RN R + +TQKE+ ++ G +S I E G + ++ +A+ L + L P Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70 >gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] Length = 120 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 29/72 (40%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + ++ + + IR + +++++ G +++ I E G+ + N D ++ Sbjct: 1 MDNSFELSSKLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGERSPNADYLVQFY 60 Query: 71 HTLDTPLWKLLK 82 L LL Sbjct: 61 KHFGINLHWLLT 72 >gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] Length = 194 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ LTQ+++ ++ +S+ E G ++ + L+ L +L Sbjct: 7 GKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVLGVSPETVL 65 >gi|195978988|ref|YP_002124232.1| transcriptional regulator PlcR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975693|gb|ACG63219.1| transcriptional regulator PlcR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 285 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RKE LTQKE+ G Q+ IS++E G++T ++D L LD + Sbjct: 9 IKTKRKEKGLTQKELAE--GICVQAVISKIEKGETTPSVDIFFKLVKKLDIDM 59 >gi|170720494|ref|YP_001748182.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169758497|gb|ACA71813.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 229 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + + RK A+LTQ E+ TG Q+ IS+LE G+S + N +A Sbjct: 3 YKDRIKAARKHARLTQAELAAMTGINQASISDLERGRSQRSSYN-STIARACGVS 56 >gi|148560660|ref|YP_001259108.1| hypothetical protein BOV_1147 [Brucella ovis ATCC 25840] gi|148371917|gb|ABQ61896.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 472 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|83717192|ref|YP_440203.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83651017|gb|ABC35081.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 66 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R RKE ++Q+ + + +S + ++E G+ + N+I +A + +L Sbjct: 1 MLGAAIRARRKELAMSQEVLADFVEIDRSHLGKIERGERNVTFMNIIRIARVMQLLPSEL 60 Query: 81 LK 82 L+ Sbjct: 61 LR 62 >gi|327461171|gb|EGF07504.1| hypothetical protein HMPREF9394_1037 [Streptococcus sanguinis SK1057] Length = 523 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + R LTQ + + ++ IS E G INI ++I A L+ L Sbjct: 1 MIGNFLKQKRLAMGLTQDFVAKQLNISRQAISNWENGSRDINIRDLIAYAKILEISFEDL 60 >gi|317403733|gb|EFV84218.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 194 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R+ T K+ TG + S +S++E G + DN+I +A L+ + +L Sbjct: 8 VLAQRLRALRQARDWTLKQAALATGVSASTLSKIENGLLSPTYDNLIKIAAGLELDVAEL 67 Query: 81 LK 82 Sbjct: 68 FT 69 >gi|309389332|gb|ADO77212.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM 2228] gi|309389630|gb|ADO77510.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM 2228] Length = 92 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 25/54 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R E LTQKE+ +R G QS IS LE +++ + +AH L Sbjct: 34 KQIIRYRIENNLTQKELADRIGTKQSAISRLENDDYNPSVEFLDKVAHAFGKKL 87 >gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 335 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +++R +TQ+++ G ++ +++ E+ ++ +D ++ + D + Sbjct: 1 MSFRDNLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKICQVFDCTIDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LVQ 63 >gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 192 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R+ L+Q+++ + ++ +++ E+ K +I N+ +A + L Sbjct: 3 MTLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|208742303|ref|YP_002267755.1| transcriptional regulator [Bacillus cereus] Length = 66 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q ++ N+ G + I LE GK ++ +A L P+ L Sbjct: 6 RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62 >gi|166032239|ref|ZP_02235068.1| hypothetical protein DORFOR_01942 [Dorea formicigenerans ATCC 27755] gi|226325646|ref|ZP_03801164.1| hypothetical protein COPCOM_03459 [Coprococcus comes ATCC 27758] gi|166027962|gb|EDR46719.1| hypothetical protein DORFOR_01942 [Dorea formicigenerans ATCC 27755] gi|225205770|gb|EEG88124.1| hypothetical protein COPCOM_03459 [Coprococcus comes ATCC 27758] Length = 106 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R R+EA +TQ+ + + + + +E T ++ + L + L ++LK Sbjct: 5 GKAIRRYREEAGITQERLAELVDISTNHLGAIEREVKTPTMETFVKLLNVLGAEPNEVLK 64 >gi|161526194|ref|YP_001581206.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343623|gb|ABX16709.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 281 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EAK T E+ + ++S++E + I+I +++ +A L+ PL L+ Sbjct: 9 GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 67 >gi|298207938|ref|YP_003716117.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus HTCC2559] gi|83850579|gb|EAP88447.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus HTCC2559] Length = 187 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ RK+ L+Q+E+ + + I +ET K+ + ++ L + L Sbjct: 4 LGQKIKDARKQKGLSQEELADSAKVSLRTIQRIETNKNEPRGKTLHLICTALQLNIEDL 62 >gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces venezuelae ATCC 10712] Length = 509 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R+ TQ ++ + +QS ++ +E G I+++ + + LD+ + L Sbjct: 10 GKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67 >gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1178 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R++R+ A LTQ + ++G + ++++E G + ++ + L L L Sbjct: 10 FGRRLRHLRRLAGLTQAALAGQSGVSLEHLNKIERGAAAPSLAAVESLQQALGVEPASLF 69 >gi|291550735|emb|CBL26997.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 643 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F +RK TQ ++ + G ++S + E G T + + + ++ L L Sbjct: 2 KTKFNEYLTKLRKSRVYTQAQMAEKLGISRSTYTNYENGNRTPDFEVLERISEVLACSLD 61 Query: 79 KLL 81 +L Sbjct: 62 ELF 64 >gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1] Length = 163 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RKE TQ+ + + G +S ETG ++ +++L+ D + ++ Sbjct: 5 MIGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIPPVECLVMLSDIYDVSINEI 64 Query: 81 L 81 + Sbjct: 65 V 65 >gi|237717327|ref|ZP_04547808.1| transcriptional regulator [Bacteroides sp. D1] gi|262406092|ref|ZP_06082642.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294648160|ref|ZP_06725703.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|229443310|gb|EEO49101.1| transcriptional regulator [Bacteroides sp. D1] gi|262356967|gb|EEZ06057.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292636544|gb|EFF55019.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] Length = 191 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] Length = 137 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R RK +TQ ++ G + + E+G + + + +A TL + Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNA 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|213964545|ref|ZP_03392745.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213952738|gb|EEB64120.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 144 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+IR + T +E+ + ++SELE G+ ++ + + + L + Sbjct: 63 REALGETLRDIRSRSGQTLRELSENAAISPGYLSELERGRKEVSSELLASVCAALGVTVS 122 Query: 79 KLL 81 L+ Sbjct: 123 DLM 125 >gi|167461941|ref|ZP_02327030.1| hypothetical protein Plarl_05195 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 68 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +TQ+E+ N+ G + ++IS LE + L+ L+ P+ +L Sbjct: 8 ETFIRARVLQGMTQRELANKCGLSYAYISLLERSVKPVGPATAKKLSEVLNRPMEELF 65 >gi|146280153|ref|YP_001170310.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC 17025] gi|145558394|gb|ABP73005.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC 17025] Length = 82 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P + +R R R KL+QK++ TG AQS IS++E G + ++D + Sbjct: 2 PTSPSSPIRSLRQAGAVLRARRTARKLSQKQLGEMTGTAQSTISDIENGVVSASLDVYLR 61 Query: 69 LAHTLDTPL 77 L L L Sbjct: 62 LLEALGAEL 70 >gi|148240891|ref|YP_001220392.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411267|gb|ABQ39720.1| putative transcriptional regulator (Helix-turn-helix motif) [Bradyrhizobium sp. BTAi1] Length = 108 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLW 78 M + + +R + K + +++ + G +++ I +LETGK S +I+ + LA + + Sbjct: 1 MALASKIKELRLKKKKSLQDVADDVGASKAHIWDLETGKSSNPSIELLTKLAKCFEVSVA 60 Query: 79 KLL 81 +L+ Sbjct: 61 ELI 63 >gi|315163833|gb|EFU07850.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 433 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 29/50 (58%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + +RK +LTQ++ ++ +++S++S +ETGK TI + + T Sbjct: 4 QEIKQLRKRLRLTQQQFADKLHWSKSYLSMIETGKRTITKTAIERINQTF 53 >gi|307324662|ref|ZP_07603868.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889544|gb|EFN20524.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 403 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80 R+ TQ+++ + G++QS IS LE G+ + ++D + ++A L + Sbjct: 11 GEAISAARRARGWTQQQLADICGYSQSTISRLERGRQSARDVDVLALVADRLGMDPSDV 69 >gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] Length = 100 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RKE +T + + G +Q +S E G + INI+++++++ L TP+ Sbjct: 7 LVGKRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPI 63 >gi|284034602|ref|YP_003384533.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813895|gb|ADB35734.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 807 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWK 79 F + R++R A LTQ+ + R+G + I LE G+ + LA L Sbjct: 9 FAHLLRHLRTTAGLTQERLAERSGLSPQAIGALEGGRRQYPRPTTVAQLADALSLSPED 67 >gi|270490569|ref|ZP_06207643.1| toxin-antitoxin system, antitoxin component, Xre family [Yersinia pestis KIM D27] gi|270339073|gb|EFA49850.1| toxin-antitoxin system, antitoxin component, Xre family [Yersinia pestis KIM D27] Length = 94 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R++ LTQ+E+ R G + IS +E G + N+ + A L Sbjct: 22 RQAMMTELKAARQQCNLTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 77 >gi|256854918|ref|ZP_05560282.1| predicted protein [Enterococcus faecalis T8] gi|307290768|ref|ZP_07570666.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|256710478|gb|EEU25522.1| predicted protein [Enterococcus faecalis T8] gi|306498188|gb|EFM67707.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|315028649|gb|EFT40581.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 257 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQ++I + +S+ ETG+S +IDN+++L+ + + +L++ Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63 >gi|256617991|ref|ZP_05474837.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257091482|ref|ZP_05585843.1| predicted protein [Enterococcus faecalis CH188] gi|312905563|ref|ZP_07764677.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256597518|gb|EEU16694.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257000294|gb|EEU86814.1| predicted protein [Enterococcus faecalis CH188] gi|310631292|gb|EFQ14575.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315576531|gb|EFU88722.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 257 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQ++I + +S+ ETG+S +IDN+++L+ + + +L++ Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63 >gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 182 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RKE LT KEI G + + ++ E ++ +I+++I +A L L Sbjct: 1 MIGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|238925959|ref|YP_002939477.1| hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656] gi|238877636|gb|ACR77343.1| Hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656] Length = 183 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSW-ISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + IR K+TQKE+ + G I + E G D + +A LD + L Sbjct: 3 FNLKLKKIRTFRKMTQKELSEKIGLTDQHRIVQYEKGVRVPKKDLVDKMAKALDVNPYTL 62 >gi|291298297|ref|YP_003509575.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567517|gb|ADD40482.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 262 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R + LTQ+++ R G + +S +ETG+S ++ + LD PL Sbjct: 14 GELIRHWRGQRHLTQQQLSIRCGVSTRHLSFIETGRSRPTASMILRVCEELDVPLRH 70 >gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 233 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M + R +A ++Q ++ + G +Q I ++E G++ + + +A ++ Sbjct: 6 MSIAKRLLDARIKAGMSQADLAEKVGVSQQSIQKIEAGQTN-SPRRISDIAKAVNVS 61 >gi|222084212|ref|YP_002542738.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721660|gb|ACM24816.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 121 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R +R ++QKE+ +++S LE GK T D + +A + Sbjct: 4 FGEAVRKLRARKGVSQKEMAAALNVTPAYLSALEHGKRGTPTFDLLQRIAGYFNI 58 >gi|168181028|ref|ZP_02615692.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182668073|gb|EDT80052.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|322807884|emb|CBZ05459.1| putative transcription regulator, lacI/xre family [Clostridium botulinum H04402 065] Length = 220 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + LTQK++ + G A+++I+E+E+G+ IN M ++ L Sbjct: 7 KIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57 >gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 435 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E + R R + Q E+ G + S+++ +E + I +I LA L+ Sbjct: 1 MPESSMIGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLEV 60 Query: 76 PLWKL 80 L Sbjct: 61 EPSAL 65 >gi|148381499|ref|YP_001256040.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153933346|ref|YP_001385874.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936871|ref|YP_001389281.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148290983|emb|CAL85119.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152929390|gb|ABS34890.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152932785|gb|ABS38284.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 220 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + LTQK++ + G A+++I+E+E+G+ IN M ++ L Sbjct: 7 KIKEARLKKGLTQKQLAKKLGVAENFINEIESGRKIINESLMNRISKVLGK 57 >gi|91215398|ref|ZP_01252369.1| hypothetical protein P700755_09798 [Psychroflexus torquis ATCC 700755] gi|91186350|gb|EAS72722.1| hypothetical protein P700755_09798 [Psychroflexus torquis ATCC 700755] Length = 94 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F +N RKE ++Q+ + + G + +IS +E G+ I + N +LA+ L + Sbjct: 35 FGEIIKNRRKELHMSQENLAQKVGKKRPYISRIENGE-DIRLSNFSLLANALGLSI 89 >gi|91976194|ref|YP_568853.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682650|gb|ABE38952.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 273 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ L+Q ++ + +S +ETG++ + D ++ LA LD PL + Sbjct: 19 VGDYLRQWRQRRHLSQLDLAVDAEISARHLSFVETGRAAPSRDMVMRLAERLDVPLRE 76 >gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 115 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + + R +R +L+Q E+ +Q I++ E GK+ + + LA D Sbjct: 2 KSMIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSAD 61 Query: 79 KLL 81 LL Sbjct: 62 YLL 64 >gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 250 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ +Q+++ + G + +S+ ETG +T + +I L+ + + +L+ Sbjct: 3 FREQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLI 62 >gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163] gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163] Length = 250 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ +Q+++ + G + +S+ ETG +T + +I L+ + + +L+ Sbjct: 3 FREQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLI 62 >gi|296284192|ref|ZP_06862190.1| hypothetical protein CbatJ_11236 [Citromicrobium bathyomarinum JL354] Length = 230 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + R+ + IRK LTQ+ + + G + I ++E+G+ I + +A Sbjct: 2 DTLKRDPEYIAEQVKLIRKMFSLTQENLADAAGLSSRTIEKIESGRHRPEIQTLRSIARA 61 Query: 73 LDTPLWKLLKP 83 + + KP Sbjct: 62 VQFDVNVFAKP 72 >gi|257416604|ref|ZP_05593598.1| transcriptional regulator [Enterococcus faecalis AR01/DG] gi|257158432|gb|EEU88392.1| transcriptional regulator [Enterococcus faecalis ARO1/DG] gi|315161718|gb|EFU05735.1| helix-turn-helix protein [Enterococcus faecalis TX0645] Length = 433 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RK +LTQ++ + +++S++S +ETGK TI ++ + T Sbjct: 4 QEIKILRKRLQLTQQQFAEKLDWSKSYLSMIETGKRTITKKSIEKIRKTFH 54 >gi|302875737|ref|YP_003844370.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689168|ref|ZP_07631614.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578594|gb|ADL52606.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 434 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + +RKE T K++ IS +E+GKS ++D + LA+TL + Sbjct: 2 EILSLGEKIKRLRKEKGFTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANTLHCTV 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|300361873|ref|ZP_07058050.1| XRE family transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354492|gb|EFJ70363.1| XRE family transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 129 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80 + R+ ++TQ+++ + + ++IS++E G I+I + +A L T + L Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDAIAKALQTSVITL 71 Query: 81 L 81 + Sbjct: 72 I 72 >gi|219871029|ref|YP_002475404.1| transcriptional regulator/helix-turn-helix domain-containing protein [Haemophilus parasuis SH0165] gi|219691233|gb|ACL32456.1| transcriptional regulator/helix-turn-helix domain-containing protein [Haemophilus parasuis SH0165] Length = 129 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 31/60 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R+ +Q+++ + + + + +E G++ +++D + +A LD + L+ P Sbjct: 5 EKIRKLRETKLWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDIVNLISP 64 >gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] Length = 334 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + RK+ TQ+++ + G ++ +S+ E+ + ++ +I LA + Sbjct: 16 MILADKIIEERKKNGWTQEDLAQKLGVSRQSVSKWESAGAIPDLKKIIQLADLFEVSTDY 75 Query: 80 LLK 82 LLK Sbjct: 76 LLK 78 >gi|67078283|ref|YP_245903.1| transcriptional regulator [Bacillus cereus E33L] gi|66970589|gb|AAY60565.1| transcriptional regulator [Bacillus cereus E33L] Length = 66 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q+++ N+ G + I LE GK + +A L P+ L Sbjct: 6 RMKEYRVRLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 62 >gi|324990569|gb|EGC22505.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325688320|gb|EGD30339.1| transcriptional regulator [Streptococcus sanguinis SK72] Length = 108 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102 >gi|307318972|ref|ZP_07598403.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306895386|gb|EFN26141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 470 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E IF R IR +LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|304315772|ref|YP_003850917.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777274|gb|ADL67833.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 438 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ L Q +I F++ +IS +E GK ++ + +A+ L+ PL L Sbjct: 6 LGKKIREERKKLFLKQGDISGD-EFSKGYISLIEKGKINPSLKALDFIANKLNKPLVYFL 64 >gi|295099748|emb|CBK88837.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 67 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +TQKE+ ++ I+ +E G+ I + LD L L Sbjct: 7 MKAARASKDMTQKELAEAVDVSRQTINMIEKGEYNPTIKLCRAICRALDKTLDDLF 62 >gi|294676430|ref|YP_003577045.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475250|gb|ADE84638.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 120 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ R +TQ+++ ++ G I + ETG + ++ + +A LD P Sbjct: 9 VGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADALDVP 63 >gi|257079599|ref|ZP_05573960.1| cro/CI family transcriptional regulator [Enterococcus faecalis JH1] gi|294780879|ref|ZP_06746233.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|256987629|gb|EEU74931.1| cro/CI family transcriptional regulator [Enterococcus faecalis JH1] gi|294452005|gb|EFG20453.1| DNA-binding protein [Enterococcus faecalis PC1.1] Length = 433 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RK +LTQ++ + +++S++S +ETGK TI ++ + T Sbjct: 4 QEIKILRKRLQLTQQQFAEKLDWSKSYLSMIETGKRTITKKSIEKIRKTFH 54 >gi|194335906|ref|YP_002017700.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194308383|gb|ACF43083.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 91 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 3 RRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +RK + P + + F R RK A LTQ+++ + +S +S +E Sbjct: 10 KRKDESPDFAKTFEQGYEQFRIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSED 69 Query: 61 INIDNMIILAHTLDTPL 77 I + + A L L Sbjct: 70 IRLSTLSHYAEALGKKL 86 >gi|190890421|ref|YP_001976963.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190695700|gb|ACE89785.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 469 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|168186759|ref|ZP_02621394.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] gi|169295309|gb|EDS77442.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] Length = 432 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ IS +E+GKS ++D + LA +L+ + Sbjct: 2 EILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAESLNISI 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|152970487|ref|YP_001335596.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894976|ref|YP_002919710.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|262044571|ref|ZP_06017627.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003723|ref|ZP_08304741.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955336|gb|ABR77366.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547292|dbj|BAH63643.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038115|gb|EEW39330.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536860|gb|EGF63164.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 189 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 VP 68 >gi|94991134|ref|YP_599234.1| transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94544642|gb|ABF34690.1| Transcriptional regulator [Streptococcus pyogenes MGAS10270] Length = 195 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|5852826|gb|AAD54225.1|AF143443_4 MesF [Leuconostoc mesenteroides] gi|30909074|gb|AAP37399.1| MesF [Leuconostoc mesenteroides subsp. mesenteroides] Length = 87 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK A ++Q ++ Q +S E+G+ +ID++I ++ LD + +L Sbjct: 27 GPNLKKYRKLANISQFKLGQLLNVNQVTVSHYESGQRVPDIDSLIKISDILDVDIKDIL 85 >gi|85859123|ref|YP_461325.1| transcriptional regulator helix turn helix [Syntrophus aciditrophicus SB] gi|85722214|gb|ABC77157.1| transcriptional regulator helix turn helix [Syntrophus aciditrophicus SB] Length = 117 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 24/50 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R + LTQK++ G Q ISE+E GK I + L L+ Sbjct: 62 LRALRAKENLTQKQLAELIGIPQRHISEMENGKRPIGKEMAKRLGKALNV 111 >gi|327468930|gb|EGF14402.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 108 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 44 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102 >gi|327462801|gb|EGF09123.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 116 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 70 >gi|315640521|ref|ZP_07895629.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483725|gb|EFU74213.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 209 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + TQ+E+ N ++ IS E +S +I +++ L+ + L +LLK Sbjct: 4 GEQLKRARSQIGKTQEEVANALHVSRQTISSWENKRSYPDISSLLNLSDYYNLSLDRLLK 63 >gi|313889294|ref|ZP_07822945.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122342|gb|EFR45430.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 367 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE +TQ+E+ ++ +S+ ETG+S +I + LA + + +L+ Sbjct: 5 GENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 >gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 367 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE +TQ+E+ ++ +S+ ETG+S +I + LA + + +L+ Sbjct: 5 GENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 >gi|302549961|ref|ZP_07302303.1| transcriptional regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302467579|gb|EFL30672.1| transcriptional regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 201 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + ++ R T + R G ++ + ++E ++ ++ ++ + L + Sbjct: 20 QSLARSVKHWRAVRGFTLDVLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 79 Query: 80 LL 81 LL Sbjct: 80 LL 81 >gi|291516023|emb|CBK65233.1| Helix-turn-helix [Alistipes shahii WAL 8301] Length = 69 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + RK K+TQ+ + G + ++++E G+ I+ + + TL L Sbjct: 4 VGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGNPTIEVLEKILDTLGLEL 59 >gi|289550066|ref|YP_003470970.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315659305|ref|ZP_07912169.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179598|gb|ADC86843.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315495730|gb|EFU84061.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 71 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R +K++Q E+ G ++ I+ +E GK ++ + +A TL T L L Sbjct: 9 NKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLF 66 >gi|261856939|ref|YP_003264222.1| XRE family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837408|gb|ACX97175.1| transcriptional regulator, XRE family [Halothiobacillus neapolitanus c2] Length = 184 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R +L+Q+ + RTG A + IS +E+G+++ ++ + + + L + Sbjct: 5 VGFRLRLVRLRHQLSQRALAKRTGVAHATISLIESGRTSPSVSALKRILAGIPMTLGEFF 64 >gi|218515801|ref|ZP_03512641.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] Length = 469 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|205374685|ref|ZP_03227479.1| putative phage repressor [Bacillus coahuilensis m4-4] Length = 115 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R+ L+Q+E+ + + I + E G+ + ++ L+ LD P +L+ Sbjct: 4 FGEHLKMQRELHGLSQEELAFKARLGKRTIEKYENGEQIPDTQTILKLSTVLDIPASELM 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|220910730|ref|YP_002486040.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] gi|219867502|gb|ACL47839.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 825 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LTQ +I G +Q+ +S E TI+ + +I A L T + LL Sbjct: 5 LRGVRERAGLTQSQIAAMLGLSQAQVSRYEQDPGTISTELLIRWAQALGTDIPTLL 60 >gi|170756661|ref|YP_001783198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|170758689|ref|YP_001788899.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169121873|gb|ACA45709.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169405678|gb|ACA54089.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 220 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + LTQK++ + G A+++I+E+E+G+ IN M ++ L Sbjct: 7 KIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57 >gi|169829011|ref|YP_001699169.1| hypothetical protein Bsph_3551 [Lysinibacillus sphaericus C3-41] gi|168993499|gb|ACA41039.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 68 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R +RK K+TQ+++ G ++ I +E+GK +++ ++ + Sbjct: 3 NRIRELRKSRKITQEDLSKLVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53 >gi|149001805|ref|ZP_01826778.1| hypothetical protein CGSSp14BS69_08755 [Streptococcus pneumoniae SP14-BS69] gi|147760263|gb|EDK67252.1| hypothetical protein CGSSp14BS69_08755 [Streptococcus pneumoniae SP14-BS69] Length = 171 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|15676049|ref|NP_273179.1| hypothetical protein NMB0121 [Neisseria meningitidis MC58] gi|254805833|ref|YP_003084054.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|7225338|gb|AAF40580.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|254669375|emb|CBA08502.1| putative transcriptional regulator [Neisseria meningitidis alpha14] gi|254671139|emb|CBA08177.1| DNA-binding protein [Neisseria meningitidis alpha153] gi|254672825|emb|CBA06986.1| DNA-binding protein [Neisseria meningitidis alpha275] gi|261391659|emb|CAX49107.1| putative DNA-binding protein [Neisseria meningitidis 8013] gi|308388339|gb|ADO30659.1| hypothetical protein NMBB_0127 [Neisseria meningitidis alpha710] gi|316985966|gb|EFV64905.1| helix-turn-helix family protein [Neisseria meningitidis H44/76] Length = 125 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|83952252|ref|ZP_00960984.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837258|gb|EAP76555.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 477 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ R R LTQK+ R G + +++++E ++ ++ LA Sbjct: 12 PMAPRKLYAGAKLRETRSRLGLTQKDFAARLGVSLPYLNQMENNNRPVSTTVVLALAQEF 71 Query: 74 DTPLWKL 80 + +L Sbjct: 72 GFDVTEL 78 >gi|119356485|ref|YP_911129.1| XRE family transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119353834|gb|ABL64705.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides DSM 266] Length = 91 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 3 RRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +RK + P + + F R RK A LTQ+++ + +S +S +E Sbjct: 10 KRKDESPDFAKTFEQGYEQFRIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSED 69 Query: 61 INIDNMIILAHTLDTPL 77 I + + A L L Sbjct: 70 IRLSTLSHYAEALGKKL 86 >gi|117924636|ref|YP_865253.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117925852|ref|YP_866469.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117926017|ref|YP_866634.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117608392|gb|ABK43847.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] gi|117609608|gb|ABK45063.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] gi|117609773|gb|ABK45228.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 104 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLDTPLWK 79 F + RKEA LTQ+EI R G +S +S LE+ K + +I + A + L Sbjct: 40 RTFLSARKEAGLTQEEIAKRMGTTKSAVSRLESSLGDHKHSPSIATLRKYAKAVGCKLEI 99 Query: 80 LLKP 83 L P Sbjct: 100 KLVP 103 >gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 131 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + R +R + L+Q+E+ + S I+ E GK +I LA + P Sbjct: 1 MFNDRIRKLRNDKGLSQRELAKMLKISPSTIAMYELGKREPDIAMFQRLADFFNVP 56 >gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 205 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ D LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDYLLK 63 >gi|330971410|gb|EGH71476.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + I R+ LTQ ++ R + S LE GK+++++ +I L+ Sbjct: 1 MPKIIAAADKQIGQMIAKRRRALGLTQDQLAERLSMGREAYSRLELGKTSLSVPKLIQLS 60 Query: 71 HTLDTPLWKLLK 82 LD+ L +L+ Sbjct: 61 GALDSGLAELVT 72 >gi|327192173|gb|EGE59146.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 469 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|325473869|gb|EGC77057.1| helix-turn-helix domain-containing protein [Treponema denticola F0402] Length = 120 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R R R KLTQ ++ + G + +IS +ETG+ I+ +L+ Sbjct: 57 KRQTPAKTLRFYRTLNKLTQLQLAEKLGVTKQFISNMETGQKPISRKTAYLLSDIFGI 114 >gi|322806813|emb|CBZ04382.1| putative DNA-binding protein [Clostridium botulinum H04402 065] Length = 77 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELET---GKSTINIDNMIILAHTLDT 75 + IRK + QK++ NR G +QS++S+LE + T+ ID + LA L+ Sbjct: 2 LKAIRKHKGIKQKDLANRLGVSQSYLSKLENYSIYEVTVTIDIIKSLAIELNI 54 >gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 205 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ D LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDYLLK 63 >gi|291564063|emb|CBL42879.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SS3/4] Length = 120 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N+RK L+Q+E+ N ++ IS+ E+ +S + +++L+ L +L+ Sbjct: 3 FNEKLINLRKSKGLSQEELGNELKVSRQTISKWESCQSYPDFQRLVLLSDYFGLTLDELV 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|291540446|emb|CBL13557.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 172 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + R L Q E+ + S++E G ++D ++ + L LL+ Sbjct: 12 AQNLKEYRISHNLKQTEMADLLKMNYQNYSKMERGVYQPSLDKLLEICDILMLTPNDLLQ 71 >gi|262403095|ref|ZP_06079655.1| hypothetical protein VOA_001077 [Vibrio sp. RC586] gi|262350594|gb|EEY99727.1| hypothetical protein VOA_001077 [Vibrio sp. RC586] Length = 223 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S I + F +++R + L Q ++ + G ++ +S E G+ T +ID + + Sbjct: 1 MSTEIKADESTFGGRLKSVRTQLGLNQSQMAGQIGVSKDTLSRYERGELTPSIDVLKRII 60 Query: 71 HTLDTP 76 + + Sbjct: 61 ESYSSE 66 >gi|257876868|ref|ZP_05656521.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811034|gb|EEV39854.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 281 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R+IR + K+TQK + +QS +S +E + N+ M + L L + Sbjct: 6 ESFGQNIRSIRLKRKMTQKMLAEDI-CSQSVLSRIENNEELPNVWVMYQICQRLGVTLDQ 64 Query: 80 LL 81 ++ Sbjct: 65 VM 66 >gi|257867973|ref|ZP_05647626.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874303|ref|ZP_05653956.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802056|gb|EEV30959.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808467|gb|EEV37289.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 281 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F N R+IR + K+TQK + +QS +S +E + N+ M + L L + Sbjct: 6 ESFGQNIRSIRLKRKMTQKMLAEDI-CSQSVLSRIENNEELPNVWVMYQICQRLGVTLDQ 64 Query: 80 LL 81 ++ Sbjct: 65 VM 66 >gi|90419918|ref|ZP_01227827.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335959|gb|EAS49707.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 472 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E IF R IR LTQ + G + S+++ +E + + + ++ L+ T D Sbjct: 3 ENKIFAGPRIRRIRNGLGLTQTAMAEELGISPSYLNLIERNQRPLTVQLILKLSQTYDVD 62 Query: 77 LWKL 80 + L Sbjct: 63 IGDL 66 >gi|17987085|ref|NP_539719.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|225852683|ref|YP_002732916.1| hypothetical protein BMEA_A1231 [Brucella melitensis ATCC 23457] gi|256044838|ref|ZP_05447742.1| hypothetical protein Bmelb1R_10124 [Brucella melitensis bv. 1 str. Rev.1] gi|256113744|ref|ZP_05454548.1| hypothetical protein Bmelb3E_13308 [Brucella melitensis bv. 3 str. Ether] gi|17982745|gb|AAL51983.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|225641048|gb|ACO00962.1| protein of unknown function DUF955 [Brucella melitensis ATCC 23457] gi|326409205|gb|ADZ66270.1| helix-turn-helix domain-containing protein [Brucella melitensis M28] gi|326538914|gb|ADZ87129.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 470 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|58696655|ref|ZP_00372209.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58537179|gb|EAL60281.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 279 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + TQK++ ++ G I E E G +TI D + +A L + LL Sbjct: 146 GQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 204 >gi|25011800|ref|NP_736195.1| hypothetical protein gbs1761 [Streptococcus agalactiae NEM316] gi|77413672|ref|ZP_00789856.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413341|emb|CAD47420.1| Unknown [Streptococcus agalactiae NEM316] gi|77160272|gb|EAO71399.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 197 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIYSLLLLSQIFQVSLDQLIK 63 >gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] Length = 118 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 30/54 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +R++ LTQ+E ++ G +Q +S +E +++I + I++ P+ Sbjct: 2 SKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIISQYFHVPI 55 >gi|306840350|ref|ZP_07473120.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306844086|ref|ZP_07476680.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275529|gb|EFM57261.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306289682|gb|EFM60876.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|257056871|ref|YP_003134703.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586743|gb|ACU97876.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 382 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID---NMIILAHTLDTPLWK 79 R +R+ LT ++ G + ++S++E G+ + +D ++ +A L L Sbjct: 5 GATIRRLRRWRGLTIEQAAGLAGITKGYLSKIENGR--VAVDKRSTLVAIADALRVSLVD 62 Query: 80 L 80 + Sbjct: 63 I 63 >gi|225861745|ref|YP_002743254.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298229349|ref|ZP_06963030.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255903|ref|ZP_06979489.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503691|ref|YP_003725631.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] gi|225726429|gb|ACO22280.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298239286|gb|ADI70417.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] Length = 287 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|254515932|ref|ZP_05127992.1| helix-turn-helix domain protein [gamma proteobacterium NOR5-3] gi|219675654|gb|EED32020.1| helix-turn-helix domain protein [gamma proteobacterium NOR5-3] Length = 265 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 28/53 (52%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R+ L+Q + +Q +S LE+G+S + + ++ +A L+ PL + Sbjct: 13 KQWRQRRHLSQLHLAETAAISQRHLSWLESGRSQPSREMVLKIAEALEVPLRE 65 >gi|212694772|ref|ZP_03302900.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855] gi|237710957|ref|ZP_04541438.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237727255|ref|ZP_04557736.1| transcriptional regulator [Bacteroides sp. D4] gi|265750545|ref|ZP_06086608.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|212662626|gb|EEB23200.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855] gi|229434111|gb|EEO44188.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229454801|gb|EEO60522.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|263237441|gb|EEZ22891.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 191 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ +++ E+ R+G A+ I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRL 62 >gi|217961401|ref|YP_002339969.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|229140647|ref|ZP_04269198.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|217066800|gb|ACJ81050.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|228642820|gb|EEK99100.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R LTQ E + ++S + LE + ++D + +A L + L+ Sbjct: 4 FGENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGISVDALM 63 >gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 128 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKLL 81 R RKE ++Q E+ + G +Q IS +E G I + +I LA P+ L+ Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIPCNLLIKLADIFHVPIDILI 68 >gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 132 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%) Query: 1 MPRRKRDEPHLS-DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M R P + DA+L R R+ LTQ ++ Q IS E G Sbjct: 1 MTTRPTSLPDDAQDALLAAR--VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTR 58 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + + L+ LD + +LL+ Sbjct: 59 MPTLHRLQQLSDALDCSVDQLLQ 81 >gi|302537873|ref|ZP_07290215.1| DNA-binding protein [Streptomyces sp. C] gi|302446768|gb|EFL18584.1| DNA-binding protein [Streptomyces sp. C] Length = 282 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ ++Q E+ R + IS +ETG+S + + ++ LA LD P+ + Sbjct: 26 VGALLRTWRERRGISQLELAGRADSSSRHISFIETGRSRPSEEMVLRLADRLDVPVRE 83 >gi|294629832|ref|ZP_06708392.1| PE-PGRS family protein [Streptomyces sp. e14] gi|292833165|gb|EFF91514.1| PE-PGRS family protein [Streptomyces sp. e14] Length = 410 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RN R+ A ++Q+++ + + ++E G+ ++++++ LA L T L Sbjct: 6 ENVRNHRRRAGMSQEQLAEAASLSVGVVRKVEQGQ-NVSVESLNALARALGTETSSLF 62 >gi|257051447|ref|YP_003129280.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256690210|gb|ACV10547.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 181 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R+ R+ A ++Q+E+ ++ S I +LE G + D L LD L + Sbjct: 94 FDQRIRSAREAADMSQEELADQLNEKASLIRKLEHGDHLPSDDVQQKLERALDIELTE 151 >gi|229096925|ref|ZP_04227894.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|228686535|gb|EEL40444.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F +++RK L Q+++ + ++S I+ E G S ++ + LA + L L Sbjct: 4 FSETLKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDVL 62 >gi|255280273|ref|ZP_05344828.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269364|gb|EET62569.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 421 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F RKE +TQKE R +S +S+ E G S +I + + L+ Sbjct: 11 KKTFGAFVLRRRKELGMTQKEFAARLYVTESAVSKWERGMSYPDITLIRSICSVLEVSEH 70 Query: 79 KLLK 82 +LL Sbjct: 71 ELLT 74 >gi|163791646|ref|ZP_02186042.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] gi|159873068|gb|EDP67176.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ ++ R + K +Q ++ + ++ IS+ E S +DN++ L+ + Sbjct: 1 MLLGKKLKSSRVKKKYSQNDVAEQLHISRQSISKWENDISYPELDNLVKLSTYYQVSIDH 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|42520474|ref|NP_966389.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630361|ref|YP_002727152.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630755|ref|YP_002727546.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410213|gb|AAS14323.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592342|gb|ACN95361.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592736|gb|ACN95755.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + TQK++ ++ G I E E G +TI D + +A L + LL Sbjct: 170 GQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 228 Score = 38.1 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQ E+ + G ++ E G I I+ + ++A L LL Sbjct: 16 GQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 74 >gi|29348192|ref|NP_811695.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253569505|ref|ZP_04846915.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298386116|ref|ZP_06995673.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|29340095|gb|AAO77889.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251841524|gb|EES69605.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298261344|gb|EFI04211.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 191 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|86139756|ref|ZP_01058323.1| hypothetical protein MED193_02595 [Roseobacter sp. MED193] gi|85823647|gb|EAQ43855.1| hypothetical protein MED193_02595 [Roseobacter sp. MED193] Length = 85 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 32/53 (60%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +A L QK++ +R QS ++ +E+G+ I++ +++LA + +++L Sbjct: 20 ARIKAGLGQKDLADRLKCHQSLVARIESGERRIDVVELVVLARAIGFDPFEVL 72 >gi|170718165|ref|YP_001785192.1| helix-turn-helix domain-containing protein [Haemophilus somnus 2336] gi|168826294|gb|ACA31665.1| helix-turn-helix domain protein [Haemophilus somnus 2336] Length = 134 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR+ + +Q+++ + + + +++E G++ + +D + +A LD + +L++ Sbjct: 5 EKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDVVELIQ 63 >gi|330468607|ref|YP_004406350.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811578|gb|AEB45750.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 77 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN R +R ++TQ ++ R G + + +E G+ + +++ +A L + + Sbjct: 9 NNIRALRFAHDEMTQADLAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFGVRLDDVFQ 68 >gi|256825390|ref|YP_003149350.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] gi|256688783|gb|ACV06585.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] Length = 507 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 28/52 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R+ R +TQ ++ + +QS ++ +E GK ++++ + ++ LD Sbjct: 10 GNLIRDARLHRGMTQTQVADILNTSQSAVARMEQGKQNLSLETVAKVSEALD 61 >gi|206725168|dbj|BAG71784.1| repressor of rdgA and rdgB [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 + + R L+QK + + G +Q+ I ++E GK++ ++ L++ L P Sbjct: 2 KTTLAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKASQTT-KIVELSNALHVRPE 60 Query: 78 W 78 W Sbjct: 61 W 61 >gi|311748183|ref|ZP_07721968.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] gi|126576672|gb|EAZ80920.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] Length = 63 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+ R +TQ+++ G ++ I+ +E K ++ ++ + P+ + + Sbjct: 3 NRVRDFRTAKGMTQEDLAEIIGVSRQTINAIEKEKFDPSLPTAFKMSKLFEKPIEDIFQ 61 >gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] Length = 181 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+A ++Q+E+ R G S IS +E + ++ ++ + + L + Sbjct: 3 VGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNVSPSVSSLQKVLSGMSMTLLEFF 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813] Length = 164 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ+ + + G + E GK+ I D LA + + LL Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQALADYFNVSVGYLL 59 >gi|293375426|ref|ZP_06621707.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325844490|ref|ZP_08168217.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292645979|gb|EFF64008.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325489164|gb|EGC91548.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 325 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + I +E +TQ E+ G + ++++ GK +++ + L + L + Sbjct: 17 QLLTQKLKEIAQEKGMTQSELA--AGITPRDHLNKILNGKRNPSLELLYQLCNKLRVDIR 74 Query: 79 KLLK 82 L++ Sbjct: 75 VLIE 78 >gi|290957377|ref|YP_003488559.1| hypothetical protein SCAB_29011 [Streptomyces scabiei 87.22] gi|260646903|emb|CBG70001.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 131 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R E KL +E+ R+G ++ LE GK T D + L LD P L Sbjct: 9 FGEYLHGLRHERKLGVRELARRSGIDAGGLTRLERGKITPQPDTLKALGAALDVPFADLF 68 >gi|239832075|ref|ZP_04680404.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239824342|gb|EEQ95910.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 20 KMAPRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENY 79 Query: 74 DT 75 Sbjct: 80 QI 81 >gi|182625365|ref|ZP_02953138.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] gi|177909362|gb|EDT71814.1| putative helix-turn-helix domain protein [Clostridium perfringens D str. JGS1721] Length = 224 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82 R++ +++ ++ G + ++I++LE G K+ +++ + +A+ L+ PL L+ Sbjct: 11 REKKGISKSQLAREIGVSPAYITKLENGEKTNPSLELKVKIANALEQPLTVFLE 64 >gi|126658934|ref|ZP_01730076.1| transcriptional regulator, XRE family protein [Cyanothece sp. CCY0110] gi|126619732|gb|EAZ90459.1| transcriptional regulator, XRE family protein [Cyanothece sp. CCY0110] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 30/55 (54%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R+ A LTQ E+ R QS++S+ E G+ +++ + + + L+ LLK Sbjct: 7 NARQSANLTQTELSKRLNKPQSYVSKYERGERRLDVIEFLEVCNALNIDPVILLK 61 >gi|318061088|ref|ZP_07979809.1| putative DNA-binding protein [Streptomyces sp. SA3_actG] gi|318078370|ref|ZP_07985702.1| putative DNA-binding protein [Streptomyces sp. SA3_actF] Length = 280 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S+ R+ R +R EA L K + G+ +S +S LE G+ T + ++ A Sbjct: 1 MSNDFQSARVALGARLRELRTEAGLDGKSVAELLGWQRSKVSRLENGRQTASRPDLETWA 60 Query: 71 HTLDTP 76 + P Sbjct: 61 QAVGRP 66 >gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 182 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R L+Q+E+ R G S IS +E K + ++ ++ + + L Sbjct: 4 GARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKVSPSVSSLKKVLDGIPISLADFFT 63 >gi|296102379|ref|YP_003612525.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056838|gb|ADF61576.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 175 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ + ++ TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LATTLKTQRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 TP 68 >gi|293402278|ref|ZP_06646416.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304385|gb|EFE45636.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 153 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK++ +Q+E+ + + IS E G+S D I LA L L Sbjct: 1 MLKDKLIALRKKSGYSQQELADLLSLTRQTISNWENGQSAPTFDKAIELAAIYHISLDDL 60 >gi|320008070|gb|ADW02920.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ T + TG A S +S +ETG+ ++ ++ LA L L Sbjct: 14 GPRLRAARERHGSTLAGVSCATGIAPSTLSRIETGRRKPTLEVVLRLAEEYGVSLDYL 71 >gi|256848775|ref|ZP_05554209.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|295692650|ref|YP_003601260.1| regulatory protein munl [Lactobacillus crispatus ST1] gi|256714314|gb|EEU29301.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|295030756|emb|CBL50235.1| Regulatory protein munl [Lactobacillus crispatus ST1] Length = 249 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ +F+ +R LTQ+++ +S+ S +E G S+I DN++ + + + + Sbjct: 1 MMIGEHFKRVRNSKNLTQEQMAAGI-VNRSFYSRVENGSSSITADNLMKILYKHGLAMTE 59 Query: 80 LLK 82 L+ Sbjct: 60 FLR 62 >gi|302528495|ref|ZP_07280837.1| transcriptional regulator [Streptomyces sp. AA4] gi|302437390|gb|EFL09206.1| transcriptional regulator [Streptomyces sp. AA4] Length = 149 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T ++I + ++SE+E G+ + + + + L+ PL Sbjct: 6 REAIGDRLRHARTNQRRTLRDISRAARVSLGYLSEVERGQKEASSELLASICEALELPLG 65 Query: 79 KLL 81 +LL Sbjct: 66 ELL 68 >gi|271966776|ref|YP_003340972.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509951|gb|ACZ88229.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 198 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E + +E+ RTG ++S +S LE + + + L + +LL Sbjct: 21 LADRLAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAMLGKLCAAYGRTMSQLL 80 >gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 202 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ ++ +++ TG +S++S++E + +I + ++ + +LL Sbjct: 23 LGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAVPSITTALKVSRVFGQTVGQLL 82 >gi|153853770|ref|ZP_01995126.1| hypothetical protein DORLON_01117 [Dorea longicatena DSM 13814] gi|149753520|gb|EDM63451.1| hypothetical protein DORLON_01117 [Dorea longicatena DSM 13814] Length = 77 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE L Q + ++ IS +ETGK +++ ++ + ++ Sbjct: 9 NKVEQLRKERGLNQDDFAKMLRVSRQTISSIETGKYNPSLELAFAISDFFGKRIEEIF 66 >gi|148998521|ref|ZP_01825962.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576609|ref|ZP_02722475.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068599|ref|YP_003877565.1| transposase-like protein, IS1515 [Streptococcus pneumoniae AP200] gi|147755714|gb|EDK62760.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577671|gb|EDT98199.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410136|gb|ADM85563.1| Transposase-like protein, IS1515 [Streptococcus pneumoniae AP200] Length = 415 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|115374631|ref|ZP_01461910.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|310819938|ref|YP_003952296.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|115368397|gb|EAU67353.1| putative transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|309393010|gb|ADO70469.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 124 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R I + R R A LTQ ++ + + S LE G ++ N+ +L Sbjct: 15 EPSRPLRSIVGDTLRAARLRAHLTQVDVAHLIDIDPAVYSRLERGLRLPSLQNLYLLCTA 74 Query: 73 LDTPLWKLL 81 L +LL Sbjct: 75 LRATPNELL 83 >gi|77408842|ref|ZP_00785569.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae COH1] gi|77172528|gb|EAO75670.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae COH1] Length = 71 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R + Q E+ TG ++ IS +E G+ T ++ + ++ L Sbjct: 3 LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKISQVFKESLEN 62 Query: 80 LL 81 + Sbjct: 63 VF 64 >gi|332664686|ref|YP_004447474.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333500|gb|AEE50601.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 113 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R E K TQKE+ +R GF+ +++++ G + ++ + + L Sbjct: 39 LRYLR-EHKTTQKELADRLGFSPQYVNKIVKGSENLTLETICKIQKALGI 87 >gi|322390208|ref|ZP_08063739.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143070|gb|EFX38517.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 116 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ ++Q+E+ R +I++LE + I ++ + L+ + Sbjct: 12 AQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVISALELTPEEFF 70 >gi|317055038|ref|YP_004103505.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315447307|gb|ADU20871.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E +I N+ + R E +++Q + G +++ IS +ETG+ + +I+ LD Sbjct: 3 ETLILKNHLKEARAEKRISQGALAKMVGVSRNTISSIETGQFSPTAKLALIICIALDKKF 62 Query: 78 WKLL 81 +L Sbjct: 63 EELF 66 >gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206] gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206] Length = 216 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RKE K+ Q + G + IS+ E ++ N +N++ LA L Sbjct: 4 QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDY 63 Query: 80 LLK 82 LLK Sbjct: 64 LLK 66 >gi|294814576|ref|ZP_06773219.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294327175|gb|EFG08818.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 283 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D +ER F R +R+ K TQ E+ R G++ IS +ET + L Sbjct: 13 PDGSPQER--FGVRVRRLREARKWTQDELAARMGYSGRHISAIETANKPPTLPVARALDI 70 Query: 72 TLDTP 76 Sbjct: 71 AFGLE 75 >gi|260565561|ref|ZP_05836045.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265991265|ref|ZP_06103822.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995101|ref|ZP_06107658.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265999437|ref|ZP_05466359.2| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260151629|gb|EEW86723.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262766214|gb|EEZ12003.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263002049|gb|EEZ14624.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093955|gb|EEZ17889.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 472 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|254714255|ref|ZP_05176066.1| hypothetical protein BcetM6_13066 [Brucella ceti M644/93/1] gi|254717691|ref|ZP_05179502.1| hypothetical protein BcetM_15065 [Brucella ceti M13/05/1] Length = 470 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|254393477|ref|ZP_05008616.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197707103|gb|EDY52915.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 279 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D +ER F R +R+ K TQ E+ R G++ IS +ET + L Sbjct: 9 PDGSPQER--FGVRVRRLREARKWTQDELAARMGYSGRHISAIETANKPPTLPVARALDI 66 Query: 72 TLDTP 76 Sbjct: 67 AFGLE 71 >gi|163843452|ref|YP_001627856.1| hypothetical protein BSUIS_A1235 [Brucella suis ATCC 23445] gi|254693892|ref|ZP_05155720.1| hypothetical protein Babob3T_04377 [Brucella abortus bv. 3 str. Tulya] gi|254701927|ref|ZP_05163755.1| hypothetical protein Bsuib55_13872 [Brucella suis bv. 5 str. 513] gi|254704472|ref|ZP_05166300.1| hypothetical protein Bsuib36_11190 [Brucella suis bv. 3 str. 686] gi|254706633|ref|ZP_05168461.1| hypothetical protein BpinM_06519 [Brucella pinnipedialis M163/99/10] gi|254710258|ref|ZP_05172069.1| hypothetical protein BpinB_08297 [Brucella pinnipedialis B2/94] gi|256031752|ref|ZP_05445366.1| hypothetical protein BpinM2_14069 [Brucella pinnipedialis M292/94/1] gi|256369612|ref|YP_003107122.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|294852525|ref|ZP_06793198.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026] gi|163674175|gb|ABY38286.1| protein of unknown function DUF955 [Brucella suis ATCC 23445] gi|255999774|gb|ACU48173.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|294821114|gb|EFG38113.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026] Length = 470 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|163839475|ref|YP_001623880.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952951|gb|ABY22466.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 144 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 35/77 (45%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P ++ R + R++R+ T +E+ + + ++SE+E G+ + + Sbjct: 24 KVAPGAQKKMVVLRHEIGDVLRDLRQRQGRTLREVSHNARVSLGYLSEVERGQKEASSEL 83 Query: 66 MIILAHTLDTPLWKLLK 82 + + LD P +L+ Sbjct: 84 LSSICSALDVPFSLMLR 100 >gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S] Length = 158 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +RK+ +Q ++ + GF++ ++ E G + ++ +A + L Sbjct: 1 MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|186470871|ref|YP_001862189.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197180|gb|ACC75143.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 234 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R +LT K + + G ++S +S++E G +T ++ + +A LDT + L+ Sbjct: 45 LGTRLRHARMVQQLTLKALAEQAGCSESLLSKVEGGHATPSLATLHRIALALDTNIAALV 104 >gi|116510851|ref|YP_808067.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106505|gb|ABJ71645.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 107 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + RK L+Q+E+ ++ I + ETGKS D +I+L+ D L LLK Sbjct: 7 IKENRKLKNLSQEELAKELHISRQSILKWETGKSLPTTDQLILLSEIFDCSLDTLLK 63 >gi|70725716|ref|YP_252630.1| hypothetical protein SH0715 [Staphylococcus haemolyticus JCSC1435] gi|68446440|dbj|BAE04024.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 65 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R K++Q E+ G ++ I+ +E K ++ I +A TL L L Sbjct: 2 NKVKVYRGVKKISQLELARSVGVSRQTINMIENDKYNPSLKLCINIAKTLGVTLNDLF 59 >gi|58699659|ref|ZP_00374339.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533824|gb|EAL58143.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 226 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 16 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 75 Query: 79 KLL 81 L+ Sbjct: 76 DLI 78 Score = 41.9 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R + TQK++ + + IS E G+ I ++ + +A TL Sbjct: 173 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 226 >gi|332283797|ref|YP_004415708.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7] gi|330427750|gb|AEC19084.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7] Length = 111 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +RK A LTQ ++ +R G + + LE+G + ++ +A + L +L P Sbjct: 9 LEALRKAAGLTQGQLADRAGLNRMTVQRLESGSLDPRVSTLLEMARAMGMEL--MLVP 64 >gi|322377590|ref|ZP_08052080.1| DNA-binding protein [Streptococcus sp. M334] gi|321281355|gb|EFX58365.1| DNA-binding protein [Streptococcus sp. M334] Length = 303 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P + Sbjct: 1 MLIGQKIKEIRIEKGISRSDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|313124417|ref|YP_004034676.1| hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280980|gb|ADQ61699.1| Hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 143 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ + R++RK+ L+QKE+ + Q+ ++ E G S +I + L D Sbjct: 6 MMLPSKLRDLRKKHGLSQKELAEKLMTTQAKVASWENGDSVPDISYIAKLTVLYDVSADY 65 Query: 80 LLK 82 LLK Sbjct: 66 LLK 68 >gi|296503848|ref|YP_003665548.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296324900|gb|ADH07828.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 IF 62 >gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ + +Q E+ R G ++ I+ LETGK ++ +A + + Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|238924501|ref|YP_002938017.1| hypothetical protein EUBREC_2142 [Eubacterium rectale ATCC 33656] gi|238876176|gb|ACR75883.1| Hypothetical protein EUBREC_2142 [Eubacterium rectale ATCC 33656] Length = 108 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +E L ++ +G + IS G T +DN+++LA LD + LL Sbjct: 6 FSERLSHCMQEHHLNGNDLAALSGVTAATISRYLNGLRTPTVDNVVLLADALDVSVDYLL 65 >gi|167747600|ref|ZP_02419727.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] gi|167652962|gb|EDR97091.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] Length = 110 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LT +++ + +I +LE+GK ++ ++ L L+T LL Sbjct: 6 LGRKIREKRKQCGLTSQQLADLCHVHDGYIRQLESGKKVPSMPLLLSLCDELETSPNYLL 65 Query: 82 K 82 + Sbjct: 66 E 66 >gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 168 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LANKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62 >gi|332830202|gb|EGK02830.1| hypothetical protein HMPREF9455_01080 [Dysgonomonas gadei ATCC BAA-286] Length = 80 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+++ + R A LTQ+E+ + + I LE GK ++ I ++ L P+ + Sbjct: 18 FISHLKEYRILAGLTQEELAEKVNVRRETIIRLEAGKYNPSLKLGIDISRVLKAPIEDIF 77 Query: 82 K 82 + Sbjct: 78 E 78 >gi|330832565|ref|YP_004401390.1| nucleotide sugar dehydrogenase [Streptococcus suis ST3] gi|329306788|gb|AEB81204.1| nucleotide sugar dehydrogenase [Streptococcus suis ST3] Length = 496 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +Q+E+ + TG ++ IS+LE G+ +I ++ L++ LD + L Sbjct: 19 RKELGYSQQELSDLTGINRAMISKLEQGEYLPSIPQLLSLSNVLDFEINSLF 70 >gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 354 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + +RK +TQ+++ G + +S+ ET S +I + LA L T L Sbjct: 2 KENLGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSSCPDITLLCPLARALGTNLD 61 Query: 79 KLLK 82 LL+ Sbjct: 62 TLLQ 65 >gi|319938782|ref|ZP_08013146.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811832|gb|EFW08098.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L Q E+ + G ++ +S +E G+ ++ + +AH + + Sbjct: 5 NRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEYAPSVIIALKIAHIFGENVENVF 62 >gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK LTQ E+ G +S+ E GK ++ L L L +L+ Sbjct: 7 GNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65 >gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 116 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +R +L+Q E+ +Q I++ E GK+ + + LA D L Sbjct: 1 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] Length = 475 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 23/57 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +RKE L+Q + + S+++++E + + + + Sbjct: 3 KTYVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGV 59 >gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2] gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2] Length = 207 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK ++TQKE+ N+ IS+ E S ++D ++ L+ LL Sbjct: 5 GENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNISYPDLDMLVKLSQLFHISTDALL 63 >gi|227329055|ref|ZP_03833079.1| XRE family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 112 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + RN R E +T +E+ R G ++ + E G +I + LA + PL+ Sbjct: 19 LLGLMLRNARIERNMTVEELAERAGVSRGLVYRAEEGDMGCSIGAVFELATLVGVPLF 76 >gi|326443632|ref|ZP_08218366.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 273 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 A R +F R R++A LTQ+ + + ++S +S +E + Sbjct: 6 KAAPSARQLFGTKLRRYREDAGLTQEALGLKVQISKSHLSRIENAE 51 >gi|218283651|ref|ZP_03489613.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] gi|218215711|gb|EEC89249.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] Length = 145 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R ++Q++ G ++ +S++E G+++++ N++ + + Sbjct: 24 GTRVKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAICRQFNV 76 >gi|254390786|ref|ZP_05005998.1| hypothetical protein SSCG_03325 [Streptomyces clavuligerus ATCC 27064] gi|197704485|gb|EDY50297.1| hypothetical protein SSCG_03325 [Streptomyces clavuligerus ATCC 27064] Length = 105 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R RK A +TQ + R G ++ I+ +E G + + ++A L+ +LL P Sbjct: 14 IREARKRAGVTQVYLGRRAGLSRGSIANIEAGTQVPPLYRLALIALALNVQPAELLPP 71 >gi|169786969|ref|YP_001708781.1| putative HTH-like transcriptional regulator [Acinetobacter baumannii AYE] gi|293611364|ref|ZP_06693661.1| transcriptional regulator [Acinetobacter sp. SH024] gi|169147130|emb|CAM84797.1| putative HTH-like transcriptional regulator [Acinetobacter baumannii AYE] gi|292826375|gb|EFF84743.1| transcriptional regulator [Acinetobacter sp. SH024] Length = 101 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLW 78 + R R +++Q E+ R G + +S LE G ++++N++ +A L L Sbjct: 14 LLGERLRKQRLFLEMSQAEVAARAGVGVNTVSNLEAG-RNVSVENLVRIAMVLGRLNELQ 72 Query: 79 KLLKP 83 +L +P Sbjct: 73 ELFQP 77 >gi|167834922|ref|ZP_02461805.1| hypothetical protein Bpse38_00430 [Burkholderia thailandensis MSMB43] Length = 131 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+ LTQ+++ +R ++ E G S +D + LA L LL Sbjct: 3 FSDRLAMLRKQRGLTQQQLADRAKVHLVQVNRYEAGASRPAVDVVKRLAVALSVSADALL 62 >gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] Length = 159 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK LTQ E+ G +S+ E GK ++ L L L +L+ Sbjct: 7 GNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65 >gi|161619141|ref|YP_001593028.1| hypothetical protein BCAN_A1208 [Brucella canis ATCC 23365] gi|161335952|gb|ABX62257.1| protein of unknown function DUF955 [Brucella canis ATCC 23365] Length = 470 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|170725048|ref|YP_001759074.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810395|gb|ACA84979.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 239 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ R E +Q E+ G QS++S+LE KS + + L L + Sbjct: 1 MTIGKQIKHFRAERNFSQPELAELAGIEQSYLSKLENDKSIPSNEIFRNLLSALSVNTQE 60 Query: 80 LL 81 + Sbjct: 61 FI 62 >gi|32475356|ref|NP_868350.1| transcription regulator [Rhodopirellula baltica SH 1] gi|32445897|emb|CAD78628.1| similar to transcription regulator [Rhodopirellula baltica SH 1] Length = 362 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+Q ++ R G + + E+G+ ++I M +A L +L++ Sbjct: 22 QLKQARQSLGLSQLQLAMRAGVSSRTVQFAESGQ-NVSIGTMRRIAGALGMQADQLVR 78 >gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 122 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++R+ ++Q+E+ G ++ IS E G+ + + +A+ Sbjct: 2 EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVS 60 >gi|296315170|ref|ZP_06865111.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768] gi|296837979|gb|EFH21917.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +RK +++Q E+ G ++ I+ +E K ++ LA L + +L Sbjct: 1 MVENRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAAELGATVDEL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|260430343|ref|ZP_05784316.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418372|gb|EEX11629.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 303 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + ++ +E+ NR G +++ + E G+ + I+ +I LA L+ L LL Sbjct: 9 GQRLRAFRLGSGMSAEEVANRIGISRTAVYRFEKGEV-VKIETLIGLAELLNVSLPTLL 66 >gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] Length = 275 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE LTQKE+ ++ IS+ E G S +I +I L+ LD ++L Sbjct: 13 LRKEKNLTQKELADKLNITNKAISKWERGISCPDISLLIPLSDILDVTTNEIL 65 >gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS] gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS] gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3] gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)] gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)] gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253] Length = 216 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RKE K+ Q + G + IS+ E ++ N +N++ LA L Sbjct: 4 QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDY 63 Query: 80 LLK 82 LLK Sbjct: 64 LLK 66 >gi|150005248|ref|YP_001299992.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254883715|ref|ZP_05256425.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294777357|ref|ZP_06742809.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|319643440|ref|ZP_07998063.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149933672|gb|ABR40370.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254836508|gb|EET16817.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294448825|gb|EFG17373.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|317384845|gb|EFV65801.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 191 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ +++ E+ R+G A+ I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRL 62 >gi|170721568|ref|YP_001749256.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169759571|gb|ACA72887.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 181 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R+ L+Q+E+ R+G S IS++E + + ++ ++ L + L + Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMTLAEFF 62 >gi|126700569|ref|YP_001089466.1| putative phage repressor [Clostridium difficile 630] gi|209901281|ref|YP_002290920.1| putative phage repressor [Clostridium phage phiCD27] gi|115252006|emb|CAJ69842.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|199612162|gb|ACH91335.1| putative phage repressor [Clostridium phage phiCD27] Length = 151 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPL 77 N +N R E ++ +++ N+TG ++S + ETG I +D + ILAH LD Sbjct: 14 NRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALDESP 68 >gi|66395466|ref|YP_239823.1| ORF016 [Staphylococcus phage 2638A] gi|62635893|gb|AAX91004.1| ORF016 [Staphylococcus phage 2638A] Length = 206 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK+ + Q ++ + G + S ISE E GK T + + LA + + Sbjct: 1 MFSKNLKYLRKKYDMEQIDLAKKLGRKSASSISEWEKGKYTPKMKTLSELARLFNVSIND 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|299536569|ref|ZP_07049881.1| hypothetical protein BFZC1_11132 [Lysinibacillus fusiformis ZC1] gi|298728053|gb|EFI68616.1| hypothetical protein BFZC1_11132 [Lysinibacillus fusiformis ZC1] Length = 68 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 28/51 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R +RK K+TQ+E+ + G ++ I +E+GK +++ ++ + Sbjct: 3 NRIRELRKLKKITQEELSKQVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53 >gi|261219534|ref|ZP_05933815.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261322029|ref|ZP_05961226.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260924623|gb|EEX91191.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294719|gb|EEX98215.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 472 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|261214180|ref|ZP_05928461.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261314092|ref|ZP_05953289.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317820|ref|ZP_05957017.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261752493|ref|ZP_05996202.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755152|ref|ZP_05998861.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265988850|ref|ZP_06101407.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|260915787|gb|EEX82648.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261297043|gb|EEY00540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261303118|gb|EEY06615.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261742246|gb|EEY30172.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261744905|gb|EEY32831.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661047|gb|EEZ31308.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 472 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 346 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ LTQ+E+ R G +++ E G S +I + +A LD L L Sbjct: 4 GEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHSHPDILLLAPIARLLDISLDTLF 62 >gi|251779221|ref|ZP_04822141.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083536|gb|EES49426.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 94 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RK+ L Q++I ++S E+G + ++ +I LA + L Sbjct: 1 MLGERLAELRKDKGLKQEDIGKILRISRSTYGNYESGYAEPSVSILIDLAKFYNVSL 57 >gi|206580811|ref|YP_002238246.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|290509290|ref|ZP_06548661.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] gi|206569869|gb|ACI11645.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|289778684|gb|EFD86681.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] Length = 189 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 VP 68 >gi|254392664|ref|ZP_05007839.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294815277|ref|ZP_06773920.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197706326|gb|EDY52138.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294327876|gb|EFG09519.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 275 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 A R +F R R++A LTQ+ + + ++S +S +E + Sbjct: 8 KAAPSARQLFGTKLRRYREDAGLTQEALGLKVQISKSHLSRIENAE 53 >gi|189349090|ref|YP_001944718.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189333112|dbj|BAG42182.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 276 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EAK T E+ + ++S++E + I+I +++ +A L+ PL L+ Sbjct: 4 GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 62 >gi|158425156|ref|YP_001526448.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332045|dbj|BAF89530.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 192 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + ++ R+ +++ IS++E G+++ + + LA L + Sbjct: 8 LARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIF 67 >gi|126731939|ref|ZP_01747742.1| putative DNA-binding protein [Sagittula stellata E-37] gi|126707471|gb|EBA06534.1| putative DNA-binding protein [Sagittula stellata E-37] Length = 162 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 27/49 (55%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +T ++ R+G +++ +S +E +++ + + LA P+ +L+ P Sbjct: 1 MTLNDLEARSGVSRATLSRIEKAEASPTAETLGKLATAFAVPISRLIAP 49 >gi|86750866|ref|YP_487362.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573894|gb|ABD08451.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 273 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R R+ L+Q ++ + +S +ETG++ + D ++ LA LD PL + Sbjct: 20 GDYLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVMRLAERLDVPLRE 76 >gi|86159419|ref|YP_466204.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775930|gb|ABC82767.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 477 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R++ LTQ ++ +R G + S+++ +E + + +I LA + L L Sbjct: 8 LGAKVRALRRQRNLTQAQLADRLGISASYLNLIEHHRRPLPAQLLIKLADLFELDLKSL 66 >gi|194337693|ref|YP_002019487.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194310170|gb|ACF44870.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 134 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 4 RKRDEPHLSDAI-LRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 RK ER F I K + +TQ+++ + G +S+IS + G + Sbjct: 6 RKAAAAVSPTTRRFVERQGAFAVRVTEIMKVSGITQRQLAEKLGKNESYISRIVAGWANP 65 Query: 62 NIDNMIILAHTLDTPLWKL 80 + ++ L + ++ Sbjct: 66 TLKTIVEFEVALGQNVIEI 84 >gi|327460652|gb|EGF06987.1| putative transcriptional regulator [Streptococcus sanguinis SK1] Length = 116 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 70 >gi|325266057|ref|ZP_08132743.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] gi|324982695|gb|EGC18321.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] Length = 102 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RK+ +L+Q+ + + ++ ++ +E + I LA LDT L L Sbjct: 35 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKALDTDLNALF 92 >gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942330|ref|ZP_07849178.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951464|ref|ZP_07854514.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993125|ref|ZP_07858511.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996008|ref|ZP_07861086.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589762|gb|EFR68607.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592365|gb|EFR71210.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596421|gb|EFR75266.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598947|gb|EFR77792.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642303|gb|EFS06883.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 95 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKE L+Q E+ + Q +S +TG++ M +L+ L P+ +L Sbjct: 29 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 86 >gi|317057144|ref|YP_004105611.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449413|gb|ADU22977.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 258 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E L+Q ++ G +++ + +E GK+TI + +LA D P+ ++ Sbjct: 12 EKIVALRTERGLSQNQLAEALGASRTHYNGIEHGKATITNSYINMLAEFYDVPVEDIV 69 >gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 469 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 23/57 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R E L+Q + + S+++++E + + ++ ++ Sbjct: 3 KTFVGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGV 59 >gi|291537213|emb|CBL10325.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 177 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + R L Q E+ + S++E G ++D ++ + L LL+ Sbjct: 12 AQNLKEYRISHNLKQTEMADLLKMNYQNYSKMERGVYQPSLDKLLEICDILMLTPNDLLQ 71 >gi|260891949|ref|YP_003238046.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864090|gb|ACX51196.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 144 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R+ LT KE+ R G + +++ LE G+ + +LA + P +L P Sbjct: 76 KLQALRRSYGLTLKELSRRVGISATFLGLLERGEKRASPATRELLAQHFNVPEHELFDP 134 >gi|260566283|ref|ZP_05836753.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260155801|gb|EEW90881.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] Length = 472 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|192360811|ref|YP_001984256.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686976|gb|ACE84654.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107] Length = 152 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R + +Q+++ TG + I +E G S ++ + LA + Sbjct: 3 VRKLRLQRGWSQEQLAELTGLSIRTIQRIERG-SKPGLETIKSLASVFEVDP 53 >gi|257894935|ref|ZP_05674588.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|294620540|ref|ZP_06699842.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] gi|121309458|dbj|BAF44068.1| hypothetical protein [Enterococcus faecium] gi|257831314|gb|EEV57921.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|291599794|gb|EFF30797.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] Length = 105 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E +LTQ+++ ++ IS E G++ + +N+I A D L +L Sbjct: 7 IKQKRIEKQLTQEDLAEMLLVSKKTISNWENGRTIPDTENLIQFAKLFDLSLDNIL 62 >gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125] gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125] Length = 107 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F R +RK+ LT KE+ + A+S IS E G ++D ++ +A ++ L Sbjct: 1 MFPERLRYLRKKHGLTMKELGKKINVAESTISGYENGNRKPDMDTLVKMAEYFNSSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|327394419|dbj|BAK11841.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 153 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ L+Q+ + G S IS +E K + + + L L + Sbjct: 9 GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67 >gi|307328736|ref|ZP_07607908.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885685|gb|EFN16699.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 204 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 S + ++R+E + E+ RTG ++S +S LE G+ + + L Sbjct: 16 DSGIVEPLEARLATRLGDLRRERGWSLDELARRTGISRSTLSRLERGEISPTAALLNTLC 75 Query: 71 HTLDTPLWKLL 81 + + +LL Sbjct: 76 AAYERTMSRLL 86 >gi|300115054|ref|YP_003761629.1| XRE family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540991|gb|ADJ29308.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 84 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR+ +++Q E+ G QS IS +E + + ++ LA L L+ Sbjct: 15 VGESVRIIRELQEMSQNELAKLAGIPQSTISAIENDRVNLGVERAKQLALALKCHPAVLV 74 Query: 82 KP 83 P Sbjct: 75 FP 76 >gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +N N RK L+Q+ + ++ G ++ +S+ E S + N+I +A + + + Sbjct: 1 MSLGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSKPSTQNLIKMATLFECDIKE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|261222350|ref|ZP_05936631.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998315|ref|ZP_06110872.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260920934|gb|EEX87587.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262552783|gb|EEZ08773.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 472 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|269795030|ref|YP_003314485.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269097215|gb|ACZ21651.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 242 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D R R T E+ +G + S++S+LE G++ ++ ++ ++A Sbjct: 15 DPEQSADRRLGTVVRARRHALGRTLVEVAGSSGLSHSFLSQLERGRARPSMRSLYLIAQA 74 Query: 73 LDTPLWKLL 81 L T LL Sbjct: 75 LGTTQQALL 83 >gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyces sp. AA4] gi|302433807|gb|EFL05623.1| DNA-binding protein [Streptomyces sp. AA4] Length = 474 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 5/58 (8%), Positives = 25/58 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R++R+ ++Q ++ + S+++++E + + ++ + Sbjct: 2 DKTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGV 59 >gi|256159923|ref|ZP_05457641.1| hypothetical protein BcetM4_13064 [Brucella ceti M490/95/1] gi|256255153|ref|ZP_05460689.1| hypothetical protein BcetB_12846 [Brucella ceti B1/94] Length = 470 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK LTQ ++ ++ G +Q +S LE + ++++M+ +A L L+ Sbjct: 3 NKIKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN--SLEDMLPIAQYFGVSLDYLV 58 >gi|227530294|ref|ZP_03960343.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227349771|gb|EEJ40062.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 203 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R+E LTQ E+ + + +S E K+ +++ ++ +++ L LL Sbjct: 3 FGEQIKERRQELDLTQAEVAEKYFVTRQAVSNWEHDKTYPDLNMLVKISNVYQISLDSLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 212 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M + RK+ LTQK++ + ++ IS E G+ +I ++ L+ Sbjct: 6 MSISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFGIS 62 >gi|187933142|ref|YP_001884801.1| AraC family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721295|gb|ACD22516.1| transcriptional regulator, AraC family [Clostridium botulinum B str. Eklund 17B] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + R+ LT ++ ++G A +I+ELE GK ++ + L+ L+ L+ Sbjct: 8 KEFRELKNLTVSKLSYKSGVAIGYITELENGKYKNPSLQIICKLSKALNITPNDLI 63 >gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 122 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK +Q ++ G + S ETGK ++ +A T LL Sbjct: 12 FSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLL 71 >gi|163789807|ref|ZP_02184244.1| possible transcriptional regulator [Carnobacterium sp. AT7] gi|159875029|gb|EDP69096.1| possible transcriptional regulator [Carnobacterium sp. AT7] Length = 104 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R K+TQ+E+ + ++ IS E G++ +I+++I+++ L KL+K Sbjct: 6 RLKQRRNTLKMTQEEVAEKIHVSRQTISNWENGRNLPDINSLILISEIYAISLDKLMK 63 >gi|225156053|ref|ZP_03724535.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] gi|224803150|gb|EEG21391.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] Length = 94 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 N + +R++ LTQ+E GF + E+E+G K + ++ + LA L+ Sbjct: 9 ENLKLLRQQHGLTQEEFAAIAGFNYKYYQEIESGRKKQVLLETVDRLADAYTIKPSALI 67 >gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + + ++G +++ + ++E G+S+ + LA + LL Sbjct: 13 GARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGESSPTASLLAKLAGAFGMSMSALL 71 >gi|145595917|ref|YP_001160214.1| cupin 2 domain-containing protein [Salinispora tropica CNB-440] gi|145305254|gb|ABP55836.1| Cupin 2, conserved barrel domain protein [Salinispora tropica CNB-440] Length = 215 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + T ++ +TG + S +S LE+G ++ ++ LA L +L+ Sbjct: 31 VGPRLRALRHKRATTLTDLSAQTGISVSTLSRLESGTRRPTLELLLPLARAHGVTLDELV 90 >gi|87119866|ref|ZP_01075762.1| hypothetical protein MED121_01460 [Marinomonas sp. MED121] gi|86164568|gb|EAQ65837.1| hypothetical protein MED121_01460 [Marinomonas sp. MED121] Length = 228 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDT 75 + F + IRK Q+ + + G ++ +S E G+ + +++ + L+ Sbjct: 9 KSSFGVKLKEIRKLGGWNQEVLAAQLGISRDTLSRYERGELSPSLEVFGKMMSIFSALEI 68 Query: 76 PLWKLL 81 +L Sbjct: 69 TAEDML 74 >gi|324324347|gb|ADY19607.1| prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + +RK L Q+++ + ++S I+ E G S ++ + LA + L Sbjct: 2 KTFSETLKTLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDV 61 Query: 80 L 80 L Sbjct: 62 L 62 >gi|300723769|ref|YP_003713076.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|300723780|ref|YP_003713087.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|297630293|emb|CBJ90947.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|297630304|emb|CBJ90958.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] Length = 123 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RKE TQ+++ ++ G S E G S ID +A L+ Sbjct: 11 MSFSDKLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADM 70 Query: 80 LL 81 LL Sbjct: 71 LL 72 >gi|289643382|ref|ZP_06475503.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289506780|gb|EFD27758.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 407 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLD 74 + E RK L+Q + G ++SW+S++E G ++ + + +A L+ Sbjct: 1 MTEPSTVGERLAFHRKRRGLSQVALGKLIGRSESWVSQVERGTRMVDRLSVLAQVADALN 60 Query: 75 TPLWKL 80 P+ +L Sbjct: 61 IPVSEL 66 >gi|260592611|ref|ZP_05858069.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella veroralis F0319] gi|260535381|gb|EEX17998.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella veroralis F0319] Length = 110 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R LTQ E+ + G ++ I LE+G+S I + M + L Sbjct: 42 GEAIRKARLSQNLTQDELGKKIGVQRAQICRLESGRSVITLPIMSRVFQALGI 94 >gi|260168886|ref|ZP_05755697.1| transcriptional regulator, Cro/CI family protein [Brucella sp. F5/99] Length = 470 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|226948717|ref|YP_002803808.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841592|gb|ACO84258.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 120 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RK+ ++TQ++ G + +S LE G +ID L+ P+ +L+ Sbjct: 7 LKNDRKQKEMTQEQYAELVGITRGTLSHLERG-REPSIDTSKKLSKYFKKPISELI 61 >gi|269214077|ref|ZP_05983549.2| DNA-binding protein [Neisseria cinerea ATCC 14685] gi|269144591|gb|EEZ71009.1| DNA-binding protein [Neisseria cinerea ATCC 14685] Length = 157 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 37 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 95 >gi|225627656|ref|ZP_03785693.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261758376|ref|ZP_06002085.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|225617661|gb|EEH14706.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261738360|gb|EEY26356.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] Length = 472 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63 >gi|254465017|ref|ZP_05078428.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685925|gb|EDZ46407.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 462 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 31/64 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R+ +LTQK+ + G + +++++E ++ ++ LA Sbjct: 3 TQKLYAGAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|154496243|ref|ZP_02034939.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC 29799] gi|150274326|gb|EDN01403.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC 29799] Length = 67 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE ++TQ+E+ G + I LE G+ ++ LA + +L Sbjct: 3 NRIAQLRKEGRITQEELAEAVGVTRQTIISLENGRYNASLLLAHKLAQYFHLTIEELF 60 >gi|126739320|ref|ZP_01755013.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719420|gb|EBA16129.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 260 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F N + RK +L+Q ++ + IS LETG+S + + ++ L+ L PL Sbjct: 5 FGNTLKEWRKLRRLSQLDLALSAQVSARHISFLETGRSRPSREMVLRLSEELQVPL 60 >gi|68248909|ref|YP_248021.1| hypothetical protein NTHI0420 [Haemophilus influenzae 86-028NP] gi|68057108|gb|AAX87361.1| hypothetical protein NTHI0420 [Haemophilus influenzae 86-028NP] Length = 144 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RM R +R+ +Q+E+ R + + +++E G++ +++D + +A LD + Sbjct: 4 RMNVHEKIRKLRETKHWSQEEMAERMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDIV 63 Query: 79 KLL 81 +L+ Sbjct: 64 ELI 66 >gi|332654591|ref|ZP_08420334.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516555|gb|EGJ46161.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 237 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R+E ++Q+ G +Q+ +S E G + ++ LL Sbjct: 8 FARTLSLLRQEKGVSQRAAAAELGISQALMSHYENGIREPGLSFVVKACDYYGVSADYLL 67 >gi|323359528|ref|YP_004225924.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275899|dbj|BAJ76044.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 183 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 L+ E+ R G A++ +S+LE+G +++ + LA L+ P L+ Sbjct: 20 DLSVSELARRAGVAKATVSQLESGGGNPSVETLWALATALEIPFAILV 67 >gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68] Length = 240 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDT 75 R+ N R++A LTQ + + G + IS+ E G + N D + +A L Sbjct: 21 RKMKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQC 80 Query: 76 PL 77 Sbjct: 81 SP 82 >gi|315033824|gb|EFT45756.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] Length = 109 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK LTQ+++ N G A++ + E GK T +++ +A L Sbjct: 1 MFANRLKQLRKSKPHLTQQDMANILGVAKTTYASYEQGKRTPDVEIQNKIADYFGVTLDY 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 147 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 R +R++ ++TQ E+ + G + + + E G + I D +I+LA L T L+ Sbjct: 4 GERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPSSLM 63 >gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 237 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 R R +RKE KLTQ+++ + G + + + E ++T N+I L L PL Sbjct: 3 RETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPL 62 Query: 78 W 78 W Sbjct: 63 W 63 >gi|260220496|emb|CBA28091.1| hypothetical protein Csp_A05550 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 110 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IRK ++Q++ + +++++S LE + + + LA L LL Sbjct: 6 LAKSLRTIRKSKGISQEDFGLIS--SRTYVSSLERKLKSPTLSKVDELAAVLGVHPLTLL 63 >gi|326203199|ref|ZP_08193064.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325986457|gb|EGD47288.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK+ ++Q+E+ ++ I LE G+ +I +A + ++ Sbjct: 3 NRLEQIRKQRGISQEELARVLEVSRQTIGSLENGRYNPSIILAFKIAIYFKMNIEEIF 60 >gi|238796433|ref|ZP_04639941.1| DNA-binding phage-related protein [Yersinia mollaretii ATCC 43969] gi|238719638|gb|EEQ11446.1| DNA-binding phage-related protein [Yersinia mollaretii ATCC 43969] Length = 84 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R++ LTQ+E+ +R G + IS +E G + N+ + A L Sbjct: 11 RQAMMTELKAARQQCNLTQEEVAHRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 66 >gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 1 MIGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] Length = 218 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M N + +R + L+QKE+ G + +S E G + + +A Sbjct: 1 MSIGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIADHFGI 56 >gi|168182462|ref|ZP_02617126.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237794872|ref|YP_002862424.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182674430|gb|EDT86391.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229260963|gb|ACQ51996.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 370 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + ++A + + Sbjct: 2 EKLLIGKVIYRLRKEKAITQEQLANFIGVSTAAVSKWESGTSYPDITLLSVIATFFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|153939048|ref|YP_001391690.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934944|gb|ABS40442.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319719|gb|ADG00097.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 I N + IR E L+ ++ + ISE+E GK ++N + +A+ L+ + Sbjct: 4 ILGQNIKKIRTEKGLSAYKLSKLARVGTTTISEIENGKRQSLNSTTIEKIANALNISTDR 63 Query: 80 LL 81 L+ Sbjct: 64 LM 65 >gi|90419013|ref|ZP_01226924.1| possible helix-turn-helix protein [Aurantimonas manganoxydans SI85-9A1] gi|90337093|gb|EAS50798.1| possible helix-turn-helix protein [Aurantimonas manganoxydans SI85-9A1] Length = 137 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK K+T + + +G ++S+I E+E ++ + + + +A LDT + L+ Sbjct: 38 ERVRRLRKAKKMTLEALAEASGSSRSYIWEIENRPETKPSAEKLARIAEALDTTVEFLM 96 >gi|9635701|ref|NP_061614.1| hypothetical protein phiPV83p25 [Staphylococcus prophage phiPV83] gi|162290131|ref|YP_001604114.1| putative transcriptional regulator [Staphylococcus phage phiMR11] gi|8918771|dbj|BAA97831.1| unnamed protein product [Staphylococcus prophage phiPV83] gi|161958561|dbj|BAF95116.1| putative transcriptional regulator [Staphylococcus phage phiMR11] gi|298693614|gb|ADI96836.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED133] Length = 85 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 +F N R I ++ +++ N TG ++S IS + GK+ +N++ + LA L + Sbjct: 5 EVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVS 64 Query: 79 KLLK 82 +L Sbjct: 65 ELFT 68 >gi|78188068|ref|YP_378406.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78170267|gb|ABB27363.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 109 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKLLK 82 R++A +TQ+ + + G +S +S LE+ GK ++ + A + L L Sbjct: 43 RELLLARQQAGMTQEAVAEKIGTTKSAVSRLESAGKHVPSLSTLRKYAEAVGCELEIKLT 102 Query: 83 P 83 P Sbjct: 103 P 103 >gi|57651276|ref|YP_185241.1| hypothetical protein SACOL0349 [Staphylococcus aureus subsp. aureus COL] gi|66395939|ref|YP_240285.1| ORF061 [Staphylococcus phage 96] gi|296277349|ref|ZP_06859856.1| hypothetical protein SauraMR_13427 [Staphylococcus aureus subsp. aureus MR1] gi|297590097|ref|ZP_06948737.1| helix-turn-helix DNA binding protein [Staphylococcus aureus subsp. aureus MN8] gi|57285462|gb|AAW37556.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|62636360|gb|AAX91471.1| ORF061 [Staphylococcus phage 96] gi|297577225|gb|EFH95939.1| helix-turn-helix DNA binding protein [Staphylococcus aureus subsp. aureus MN8] gi|315193377|gb|EFU23774.1| hypothetical protein CGSSa00_04586 [Staphylococcus aureus subsp. aureus CGS00] Length = 85 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 +F N R I ++ +++ N TG ++S IS + GK+ +N++ + LA L + Sbjct: 5 EVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVS 64 Query: 79 KLLK 82 +L Sbjct: 65 ELFT 68 >gi|29028583|ref|NP_803273.1| HTH DNA binding protein [Staphylococcus phage 11] gi|66395559|ref|YP_239915.1| ORF058 [Staphylococcus phage 42E] gi|88195746|ref|YP_500555.1| helix-turn-helix DNA binding protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920507|gb|AAL82248.1| HTH DNA binding protein [Staphylococcus phage 11] gi|62636052|gb|AAX91163.1| ORF058 [Staphylococcus phage 42E] gi|87203304|gb|ABD31114.1| helix-turn-helix DNA binding protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|329728903|gb|EGG65323.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 89 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 +F N R I ++ +++ N TG ++S IS + GK+ +N++ + LA L + Sbjct: 5 EVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVS 64 Query: 79 KLLK 82 +L Sbjct: 65 ELFT 68 >gi|218767191|ref|YP_002341703.1| hypothetical protein NMA0153 [Neisseria meningitidis Z2491] gi|121051199|emb|CAM07470.1| hypothetical protein NMA0153 [Neisseria meningitidis Z2491] gi|319411396|emb|CBY91807.1| putative DNA-binding protein [Neisseria meningitidis WUE 2594] Length = 126 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] Length = 237 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 R R +RKE KLTQ+++ + G + + + E ++T N+I L L PL Sbjct: 3 RETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPL 62 Query: 78 W 78 W Sbjct: 63 W 63 >gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 80 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK +TQK++ +S I+++E G S ++ + +A L + +LL Sbjct: 5 GIQIKALRKSLNMTQKQLAELVKLDESMINKIENGHSVGSVQTLSKIAAALKVSITELL 63 >gi|322374209|ref|ZP_08048742.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150] gi|321276914|gb|EFX53986.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 29/57 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+ +TQ+++ ++ G + I LE + +++ + +A + + +L Sbjct: 10 NLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEELF 66 >gi|300857320|ref|YP_003782304.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437435|gb|ADK17202.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 222 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R E ++QK++ + G ++ +I+E E+GK +N + + L+ L + Sbjct: 4 VGQKIKLARTEMGISQKQLAKKLGVSEKFINEAESGKRIVNQNIIDKLSKILGKSI 59 >gi|291087366|ref|ZP_06346240.2| putative transcriptional regulator SinR [Clostridium sp. M62/1] gi|291075503|gb|EFE12867.1| putative transcriptional regulator SinR [Clostridium sp. M62/1] Length = 140 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 F+ R +AK TQ E+ + G ++ LE + ++D ++ L L+ P +L P Sbjct: 41 FKKYRLDAKRTQDEVAEKVGITTRFLMALENEEKRPSLDILLRLVDVLNIPGDAILHP 98 >gi|166032548|ref|ZP_02235377.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] gi|166026905|gb|EDR45662.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] Length = 150 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+E LTQ+++ ++ ++ + E G ++ LA LD + +L+ Sbjct: 6 NIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDELI 62 >gi|254241644|ref|ZP_04934966.1| hypothetical protein PA2G_02348 [Pseudomonas aeruginosa 2192] gi|126195022|gb|EAZ59085.1| hypothetical protein PA2G_02348 [Pseudomonas aeruginosa 2192] Length = 96 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +RK L+Q+ + + +++++S LE + + + L +D Sbjct: 3 AKYSLAKALKTVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLHKLTELCEVMDVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|260906742|ref|ZP_05915064.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N +++RK A LTQ ++ RTG ++ I E G ++ + +A +L+T + ++ Sbjct: 6 SNLKHVRKAAGLTQAQLAQRTGVSRQTIIATERGDYAPSVYLALRIARSLETTVEEIF 63 >gi|91785146|ref|YP_560352.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689100|gb|ABE32300.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 229 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 34/76 (44%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P ++ + N +R E +L+ + +G +++ ++++E+ +S +I + Sbjct: 17 ASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVL 76 Query: 67 IILAHTLDTPLWKLLK 82 +A L + L+ Sbjct: 77 CKVAAALKVSVAAFLR 92 >gi|77463742|ref|YP_353246.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77388160|gb|ABA79345.1| Predicted transcriptional regulators [Rhodobacter sphaeroides 2.4.1] Length = 428 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R R + L Q ++ G + S+++ +E + I + + LA L Sbjct: 1 MPMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60 Query: 76 PLWKLL 81 LL Sbjct: 61 EAQTLL 66 >gi|17547329|ref|NP_520731.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429632|emb|CAD16317.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 96 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +RK L+Q+ + + +++++S LE + + + L +D Sbjct: 3 AKYSLAKALKTVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLHKLTELCEVMDVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|103487098|ref|YP_616659.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977175|gb|ABF53326.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 71 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R +Q E+ +R ++ ++ +ETGK ++ LA D P+ ++ Sbjct: 3 NQLKVLRAMRNWSQAELADRLDVSRQAVNAIETGKYDPSLPLAFKLARLFDMPIEEIF 60 >gi|322411768|gb|EFY02676.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 73 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQKE+ F S +++E G+ ++ + +I +++ + LL Sbjct: 3 QRIRDLREDNDLTQKEVATILSFTHSAYAKIERGERILSAEVLIKISNIYGVNIDYLL 60 >gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 122 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++R+ ++Q+E+ G ++ IS E G+ + + +A+ Sbjct: 2 EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVS 60 >gi|289192276|ref|YP_003458217.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938726|gb|ADC69481.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 317 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + +R+ ++ ++ G ++ I + ET + ++D I + LD PL K Sbjct: 124 KIDGKVLKEVREAMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVAIKIEEFLDVPLVK 183 Query: 80 ---LLKP 83 L +P Sbjct: 184 GIDLFEP 190 >gi|255526755|ref|ZP_05393656.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255509533|gb|EET85872.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ N + R E ++Q+++ N G ++ IS +ETG+ +ILA L Sbjct: 3 DKTNLNNRLKVARAELNISQQQLANMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|229605809|ref|YP_002876513.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae MJ-1236] gi|229372295|gb|ACQ62717.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae MJ-1236] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R++R E L Q+E+ N G ++ E G + ++ + LA P+ +L Sbjct: 4 MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL 63 Query: 81 L 81 + Sbjct: 64 V 64 >gi|219670446|ref|YP_002460881.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540706|gb|ACL22445.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 77 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 NN R R +T KE+ RTG ++S+LE G + I ++ L P Sbjct: 5 NNLREWRLANGMTLKELARRTGLDYRYLSQLEKGLRKGTPNTWIKISKELQVP 57 >gi|196033516|ref|ZP_03100928.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W] gi|195993950|gb|EDX57906.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W] Length = 115 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +R+E LTQ ++ G +S+ ETG + + + A L P+ LL Sbjct: 3 FKDRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLL 62 >gi|146302601|ref|YP_001197192.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157019|gb|ABQ07873.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 133 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N IR+ + Q + + G +Q IS +ET + T++ D ++ +A L Sbjct: 11 GRNISRIRELRGMKQGALADAIGTSQQTISSIETSE-TVDFDKLVEIAKALGV 62 >gi|85707435|ref|ZP_01038515.1| probable transcriptional regulator [Roseovarius sp. 217] gi|85668023|gb|EAQ22904.1| probable transcriptional regulator [Roseovarius sp. 217] Length = 373 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLD 74 RER++F R RK A L+ + + R + IS+ E K + ++ L L Sbjct: 11 RERIMFGQRLRLARKRAGLSMQALAERVTPSVSAQAISKYEADKMMPSSSVLVGLGKALG 70 Query: 75 TPLWKLL 81 L LL Sbjct: 71 VSLDFLL 77 >gi|327537762|gb|EGF24467.1| transcription regulator [Rhodopirellula baltica WH47] Length = 347 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+ L+Q ++ R G + + E+G+ ++I M +A L +L++ Sbjct: 7 QLKQARQSLGLSQLQLAMRAGVSSRTVQFAESGQ-NVSIGTMRRIAGALGMQADQLVR 63 >gi|304395940|ref|ZP_07377822.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356309|gb|EFM20674.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 82 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + IR+ TQ E+ + G Q+ IS E + ++ + L L+ L Sbjct: 8 LANQLKFIRQRNGWTQSELAKKVGLKQATISHFENAPDSTSLATLFKLLQALEVSL 63 >gi|302671595|ref|YP_003831555.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396068|gb|ADL34973.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 370 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK LTQ+E+ G +S+ E+G + +I ++ LA + LL Sbjct: 7 ENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLADFFSISVDVLL 64 >gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 302 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK++ +TQ+++ ++ G +S+ E G S + D + +A D + L Sbjct: 4 VFSKQLQMLRKQSGITQEQLADKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNL 62 >gi|316933837|ref|YP_004108819.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601551|gb|ADU44086.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 152 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R EA L+Q++ G + + + E+GK+ I+ + +LA P+ Sbjct: 32 AARLRVARIEAGLSQEKTAEALGLSFQQVQKYESGKNRISPGKLAVLAALYGKPI 86 >gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 166 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 25 VIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 84 Query: 81 L 81 L Sbjct: 85 L 85 >gi|225075479|ref|ZP_03718678.1| hypothetical protein NEIFLAOT_00484 [Neisseria flavescens NRL30031/H210] gi|313667416|ref|YP_004047700.1| hypothetical protein NLA_0600 [Neisseria lactamica ST-640] gi|224953198|gb|EEG34407.1| hypothetical protein NEIFLAOT_00484 [Neisseria flavescens NRL30031/H210] gi|313004878|emb|CBN86304.1| hypothetical protein NLA_0600 [Neisseria lactamica 020-06] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|251796863|ref|YP_003011594.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247544489|gb|ACT01508.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 68 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ + Q+E+ ++ I LE G+ +I +A + ++ Sbjct: 3 NRLEEHRKQHGINQEELAAALEVSRQTIGSLENGRYNPSILLAFRIARFFGKSIEEVF 60 >gi|126740822|ref|ZP_01756507.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718118|gb|EBA14835.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 186 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IR A ++ TG +++ + ++E G+S+ I + +A PL L++ Sbjct: 9 NLKEIRASAAVSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFRIPLSALIE 66 >gi|159901692|ref|YP_001547938.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894731|gb|ABX07810.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 804 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F ++ R LTQ+ + R G + S + +LET + + + LA Sbjct: 2 ETFGRWLKHQRISHDLTQEALAERIGCSVSLLKKLETHQRRPSKQIITRLATIFKV 57 >gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea ananatis AJ13355] Length = 230 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 N R++RK + +E+ G + IS LETGK + ++ +A L + +L Sbjct: 4 GNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVSELF 63 >gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 168 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|304394918|ref|ZP_07376802.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357171|gb|EFM21534.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 200 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + RK KL+ + +R G ++ + E+E G + +I + +A L + ++ Sbjct: 22 VSESIKRWRKSQKLSLDALSHRAGISKGMLVEIEKGAANPSIAILCKVAAALGVSVADIV 81 >gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 117 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +RK + ++Q + + G + E G ++ +I ++ D Sbjct: 5 RSYVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 64 Query: 79 KLL 81 +LL Sbjct: 65 ELL 67 >gi|302538345|ref|ZP_07290687.1| regulatory protein [Streptomyces sp. C] gi|302447240|gb|EFL19056.1| regulatory protein [Streptomyces sp. C] Length = 218 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ A LT + R + + +S LETG+ ++ ++ LA T T + +LL Sbjct: 29 VAPQLRELRRRAGLTLEAAAARARLSPAHLSRLETGRRQPSLPLLLGLARTYGTTVSELL 88 >gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 182 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 466 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 8/57 (14%), Positives = 24/57 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +RKE L+Q + + S+++++E +++ ++ + Sbjct: 3 KTFVGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGV 59 >gi|163815718|ref|ZP_02207090.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC 27759] gi|158449023|gb|EDP26018.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC 27759] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 M NN R IR++ + Q ++ GF+ + +E G ST + + M+ ++ + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGFSTKTVGRIERGDSTPSAEFMLRISKYFN 55 >gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 182 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] Length = 179 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + + IRK L+ TG +++ + ++E G+S+ I + ++ L+ Sbjct: 7 KSQIAAHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGESSPTISTLWKISSGLE 62 >gi|331270556|ref|YP_004397048.1| putative transcriptional regulator, lacI/xre family [Clostridium botulinum BKT015925] gi|329127106|gb|AEB77051.1| Predicted transcriptional regulator, lacI/xre family [Clostridium botulinum BKT015925] Length = 221 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R ++ +T+K++ + G ++ +I E+E+GK IN M ++ L L Sbjct: 5 GSKIKEARLKSNMTEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDL 59 >gi|328955768|ref|YP_004373101.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456092|gb|AEB07286.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +++RK +TQ + +++ + +E G+ + +A L L Sbjct: 6 QKQLGARIKSLRKTRIGMTQDAFARKCAIDETYYAAIEQGRHNPTFLMLKKIASGLRVSL 65 Query: 78 WKLLK 82 +LLK Sbjct: 66 SELLK 70 >gi|325919915|ref|ZP_08181904.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549624|gb|EGD20489.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 461 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 23/53 (43%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + R + +R+ LTQ E+ R + S+++++E + + + Sbjct: 1 MPHTQPPLRHQLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRPLTL 53 >gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] Length = 72 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 NN + R +A L+Q+++ + G ++ I +E G+ ++ LA + + L P Sbjct: 3 NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYDPSLPLAFQLAAKFECLIEDLFIP 62 >gi|291532702|emb|CBL05815.1| Helix-turn-helix [Megamonas hypermegale ART12/1] Length = 76 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLW 78 + RK + TQ+E+ R + S++S +E G + I ++ ++ LD + Sbjct: 10 LIGARIAYFRKLKRYTQEELAFRASISTSYLSRIERGIYSKGVPISTLMQISKALDIDIK 69 Query: 79 KLLK 82 L + Sbjct: 70 LLFE 73 >gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 211 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + RK+ LTQ + + + IS E GKS +++ ++ ++ + LL Sbjct: 3 FSTQIKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKSYPDLNTLVRISDFYQISIDSLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|254995332|ref|ZP_05277522.1| hypothetical protein AmarM_05275 [Anaplasma marginale str. Mississippi] Length = 187 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q ++ +R G + + E G + I I + LA L + L+ Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|239942469|ref|ZP_04694406.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 486 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E ++ + R +R+E + Q ++ G + S+ +++E G+ + ++ +A Sbjct: 7 EHKVYAHSKLRRLRRERGMNQVDMARALGISASYANQIELGQRPLTASVLLQIAKVFGV 65 >gi|227328284|ref|ZP_03832308.1| hypothetical protein PcarcW_13540 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 88 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +A LTQ+++ G A+S IS+ E+G + M A L+ P Sbjct: 5 RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP 60 >gi|300776559|ref|ZP_07086417.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300502069|gb|EFK33209.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 86 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 11 LSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 S +LR M+ F N + IR + E+ + F S ++ E GK I+ M+ + Sbjct: 2 DSKEVLRLFMLEFSENLKKIRATKYNSMDEVAQNSNFDSSNYNKFENGKGNPTIETMLKM 61 Query: 70 AHTLDTPLWKLL 81 + +L Sbjct: 62 SSAFGITPKELF 73 >gi|197303443|ref|ZP_03168482.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] gi|197297441|gb|EDY32002.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] Length = 368 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E K+TQ+E+ + G +++ +S+ E+G S +I + LA + + +L+ Sbjct: 7 AKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVSIDELI 65 >gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W] gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W] Length = 116 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK K+TQ+++ N G ++ IS E GK + +++ +A + L Sbjct: 1 MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] Length = 95 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A+ +E N R +R +L Q ++ + ++ +S E G + +I +I +A Sbjct: 22 AMKKEENAVGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGITLPDIYLLIEIADFF 81 Query: 74 DTPLWKL 80 L +L Sbjct: 82 RISLDEL 88 >gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 183 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF N + R++ LTQ E+ N+ + IS ETGK+ +I+N+I+++ L+ L Sbjct: 1 MIFHNLIKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISLDD 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|116695165|ref|YP_840741.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113529664|emb|CAJ96011.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 300 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + +Q + G +Q IS LE+G++ + + ++ LA L PL + Sbjct: 21 LRYWRSKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQ 74 >gi|86651824|gb|ABD14429.1| transcriptional regulator [Anaplasma centrale] Length = 187 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q ++ +R G + + E G + I I + LA L + L+ Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|254365396|ref|ZP_04981441.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|289553470|ref|ZP_06442680.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|308405959|ref|ZP_07494554.2| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|134150909|gb|EBA42954.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|289438102|gb|EFD20595.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|308364965|gb|EFP53816.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323718593|gb|EGB27757.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 118 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + L PL Sbjct: 12 REVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLPLS 71 Query: 79 KLL 81 +L Sbjct: 72 VVL 74 >gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++N R++R++ +Q++I + Q S+ E GK+ I +D+MI+LA + + Sbjct: 3 YLNRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLAEFYNVDM 58 >gi|284041700|ref|YP_003392040.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945921|gb|ADB48665.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 274 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R+ +L+Q ++ G + +S +ETG+S + + ++ LA LD PL Sbjct: 11 RSGVGPLLRGWRQRRRLSQLDLALEAGVSARHLSFVETGRSKPSSEMVLHLAEQLDVPLR 70 Query: 79 K 79 + Sbjct: 71 E 71 >gi|288935233|ref|YP_003439292.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889942|gb|ADC58260.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 189 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 7 LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 VP 68 >gi|300780988|ref|ZP_07090842.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300532695|gb|EFK53756.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 120 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R + +T +E+ + + ++SELE G+ ++ + + + LDT + Sbjct: 32 REALGMSLRAFRADKGVTLRELATQARVSPGYLSELERGRKEVSSELLASVCLALDTTVS 91 Query: 79 KLL 81 LL Sbjct: 92 DLL 94 >gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 157 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 16 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 75 Query: 81 L 81 L Sbjct: 76 L 76 >gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 111 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +++R + L+Q+ + ++ +Q I + E + NID + +A D + L+ Sbjct: 2 NRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLI 59 >gi|28871876|ref|NP_794495.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28855129|gb|AAO58190.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 146 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + R +R+ + + Q + G +QS IS LE G+S++ ++ + +A L+ Sbjct: 3 RIAFASALRFVRRHSSVLQADFE--GGVSQSHISRLERGESSVTLERLEEIAAHLNVHPL 60 Query: 79 KLL 81 L+ Sbjct: 61 SLI 63 >gi|331085319|ref|ZP_08334405.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408102|gb|EGG87592.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 150 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R+E LTQ+++ ++ ++ + E G ++ LA LD + +L+ Sbjct: 6 NIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDELI 62 >gi|325846459|ref|ZP_08169374.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481217|gb|EGC84258.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE K+TQ+E+ + ++ I LE G+ +I +A + + Sbjct: 3 NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60 >gi|319744842|gb|EFV97180.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 72 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R + Q E+ TG ++ IS +E G+ T ++ + ++ L Sbjct: 4 LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKISQVFKESLEN 63 Query: 80 LL 81 + Sbjct: 64 VF 65 >gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.] Length = 433 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR + +Q E+ G S IS++E+ + ++ +I +A TL Sbjct: 254 LGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQIYPSLPALIKIAETLSV 307 >gi|291448916|ref|ZP_06588306.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291351863|gb|EFE78767.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 277 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R++ +++Q E+ R + IS +ETG+S + D ++ LA LD P+ + Sbjct: 14 LRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEHLDVPVRE 67 >gi|261414728|ref|YP_003248411.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371184|gb|ACX73929.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 130 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + + +R TQ+++ ++ G + +S +E GK I LA+ L T Sbjct: 66 ARSTPAESLKLLRTTFGYTQQQLADKAGITKQQVSAMERGKEPIGRKMAHRLANALGTSY 125 Query: 78 WKLL 81 L Sbjct: 126 KNLF 129 >gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +SD + R+ LTQ ++ G + +S +E GKS ++ ++ L+ Sbjct: 1 MSDKTEQLVQSIGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSVPSVLRLLELS 60 Query: 71 HTLDTPLWKLLK 82 + LL Sbjct: 61 EIFGCEVADLLT 72 >gi|238063738|ref|ZP_04608447.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885549|gb|EEP74377.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 403 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80 + R +TQ++ +R G ++SW+ ++E G + + N+ +A L L L Sbjct: 17 VGRRVAHWRVRRNMTQQQFADRLGKSKSWVDKVERGVRRLERVSNLREVAEALRIDLEML 76 Query: 81 L 81 L Sbjct: 77 L 77 >gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 101 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R R + + I ER + ++RK LTQ ++ G Q IS++E+GK+ ++ Sbjct: 17 QRARIDAIKQEMIDAER---GHELASLRKAQGLTQSQVAEAMGVTQGRISQIESGKTRLD 73 Query: 63 IDNMIILAHTLDTPL 77 + M H + L Sbjct: 74 TETMAAYLHAIGGEL 88 >gi|206973277|ref|ZP_03234199.1| conserved domain protein [Bacillus cereus AH1134] gi|206732161|gb|EDZ49361.1| conserved domain protein [Bacillus cereus AH1134] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q+++ G + I LE GK + +A L PL L Sbjct: 6 RMKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPLEVLF 62 >gi|199599583|ref|ZP_03212967.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] gi|199589527|gb|EDY97649.1| putative transcriptional regulator [Lactobacillus rhamnosus HN001] Length = 92 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ A LTQ+E+ R QS I+ +E G+ + D M +A L L Sbjct: 41 RERAGLTQRELAERADVPQSTIARIEHGQ-NTSFDTMSKIAFALGKKL 87 >gi|89070253|ref|ZP_01157577.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] gi|89044173|gb|EAR50331.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] Length = 187 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +R+ L+Q+E+ RTG IS++E+ + ++ + + P+ Sbjct: 8 QMVAQRLRVVRQSRGLSQRELARRTGVGSGTISQIESMATQPSVAVLKKILD--GVPM 63 >gi|238784124|ref|ZP_04628138.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia bercovieri ATCC 43970] gi|238714970|gb|EEQ06968.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia bercovieri ATCC 43970] Length = 196 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R ++T K++ + G ++S +S+LE ++ ++ + LA L+T + L+ Sbjct: 15 LGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|303241397|ref|ZP_07327900.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591006|gb|EFL60751.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 128 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + +R E LTQ + +++ +S E G N D +I ++ + + LL Sbjct: 4 FGDKLKMLRLEKNLTQNGLAKHLNVSKANVSRYELGTRQPNFDTLISISAFFNVSIDWLL 63 >gi|256396427|ref|YP_003117991.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362653|gb|ACU76150.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 77 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R EA LTQ ++ G QS++S+ E+G +++ + +A L T + +L+ Sbjct: 17 LRELRHEADLTQVQVAAALGVPQSFVSKYESGDRRLDLIELHHVAKALGTTVQTILE 73 >gi|258653000|ref|YP_003202156.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556225|gb|ACV79167.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 73 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ R +R A +TQ ++ +R G + + +E G+ + +++ +AH L + + Sbjct: 9 NSIRALRFAAGEMTQADLADRIGVTRQTVIAIEQGRYSPSLEMAFRIAHVFGVGLDAVFQ 68 >gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 327 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + N RK+ ++Q ++ R + + + E G+S +I L+ L L Sbjct: 5 KMIGNKITEARKKINISQVQLAQRLFISPQAVGKWERGESMPDIITFNRLSEILGVDL 62 >gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + +R A TQ+ + ++ G ++ I+ +E G + + LA L+T Sbjct: 6 LGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFIPSTIVALDLARALNT 59 >gi|145301000|ref|YP_001143841.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853772|gb|ABO92093.1| putative transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 180 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R +A L+Q+E+ R+G +IS++E + + ++ ++ + + L Sbjct: 4 GHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVSSLRKVLEGIPMSLASFFT 63 >gi|116629496|ref|YP_814668.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116095078|gb|ABJ60230.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 129 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80 + R+ ++TQ+++ + + ++IS++E G I+I + +A L T + L Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDTIAKALQTSVITL 71 Query: 81 L 81 + Sbjct: 72 I 72 >gi|221133625|ref|ZP_03559930.1| transcriptional regulator, XRE family protein [Glaciecola sp. HTCC2999] Length = 521 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINIDNMIIL 69 R+ + RN+RK LT ++ +R + S++S +E GK + D + ++ Sbjct: 14 RKTHLLGTKVRNLRKRNNLTLDDLSSRCIRFDANNAPSVSYLSMIERGKRVPSWDMLDVI 73 Query: 70 AHTLDTPL 77 A Sbjct: 74 AQVFQKEP 81 >gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 410 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 24/53 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R+ L+Q+ + G ++ ++ +E+G +++ + LA Sbjct: 7 LGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGTRSVSTLELTRLADLYG 59 >gi|83945538|ref|ZP_00957885.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83851114|gb|EAP88972.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 71 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N + +R EA LTQ ++ R G + I+ +E G T + + +A L P+ Sbjct: 3 RSGLENAMKALRAEAGLTQADLAARVGVTRKTINTVENGVFTPSALLALKIARALGQPVE 62 Query: 79 KLL 81 ++ Sbjct: 63 QVF 65 >gi|319776281|ref|YP_004138769.1| hypothetical protein HICON_17530 [Haemophilus influenzae F3047] gi|329123426|ref|ZP_08251990.1| DNA-binding protein [Haemophilus aegyptius ATCC 11116] gi|317450872|emb|CBY87097.1| conserved hypothetical protein [Haemophilus influenzae F3047] gi|327471008|gb|EGF16463.1| DNA-binding protein [Haemophilus aegyptius ATCC 11116] Length = 127 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +L+Q+++ + + S +++E G++ + D ++ +A + L L+ Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62 >gi|296271002|ref|YP_003653634.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093789|gb|ADG89741.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 406 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R++ +Q+E+ NR G + I ++E G T ++ + LA L ++ Sbjct: 8 GAQLRALRQQLGWSQEELANRAGLSTGVIKKIE-GGGTARMETLRALARALGVHTVWFVR 66 Query: 83 P 83 P Sbjct: 67 P 67 >gi|269958434|ref|YP_003328221.1| putative transcriptional regulator [Anaplasma centrale str. Israel] gi|269848263|gb|ACZ48907.1| putative transcriptional regulator [Anaplasma centrale str. Israel] Length = 187 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q ++ +R G + + E G + I I + LA L + L+ Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|239944537|ref|ZP_04696474.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239990997|ref|ZP_04711661.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379] gi|291448000|ref|ZP_06587390.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291350947|gb|EFE77851.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 344 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R++R+ A LTQ + + G + I+ +E G+ + +D + L L+ Sbjct: 16 QLVGAQLRHLRRLAGLTQAALAEQLGVGEDTIASIEQGRRALQLDLAVQLDELLE 70 >gi|262199984|ref|YP_003271193.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262083331|gb|ACY19300.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 199 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +LTQ++ R + + + +E GKS +I + L Sbjct: 7 KTIGRAAREARTALQLTQEDAAERIHVSVEFYARIERGKSLPSIGTFARIVSALGVSADA 66 Query: 80 LL 81 LL Sbjct: 67 LL 68 >gi|221232058|ref|YP_002511210.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|220674518|emb|CAR69079.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] Length = 286 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + + RKE +QK + G QS IS++E G D + LA+ L PL Sbjct: 3 ILSDKLKAKRKEKGFSQKTLSE--GICEQSQISKIERGNYMPAADLLYKLANRLQVPL 58 >gi|218901695|ref|YP_002449529.1| hypothetical protein BCAH820_0556 [Bacillus cereus AH820] gi|218539522|gb|ACK91920.1| conserved domain protein [Bacillus cereus AH820] Length = 49 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 24/47 (51%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+++ G + ++SE+E GK ++ I +A L + + Sbjct: 1 MSQEKLAKEVGITRQYLSEIENGKKQPSVIIAIKIAKVLKIKVEDIF 47 >gi|125717170|ref|YP_001034303.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|262283414|ref|ZP_06061180.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|125497087|gb|ABN43753.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] gi|262260905|gb|EEY79605.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 116 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ ++Q+E+ R +I++LE + I ++ + L+ + Sbjct: 12 AQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVISALELTPEEFF 70 >gi|73537860|ref|YP_298227.1| XRE family transcriptional regulator [Ralstonia eutropha JMP134] gi|72121197|gb|AAZ63383.1| transcriptional regulator, XRE family [Ralstonia eutropha JMP134] Length = 294 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +Q + G +Q IS LE+G+S + + ++ LA L PL + Sbjct: 18 LRYWRGRRGYSQLALSLAAGVSQRHISFLESGRSRPSREMVLALAERLGVPLRQ 71 >gi|56417165|ref|YP_154239.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] gi|255004638|ref|ZP_05279439.1| hypothetical protein AmarV_05075 [Anaplasma marginale str. Virginia] gi|23168718|gb|AAN08687.1| transcriptional regulator [Anaplasma marginale str. South Idaho] gi|23168730|gb|AAN08693.1| transcriptional regulator [Anaplasma marginale] gi|23168742|gb|AAN08699.1| transcriptional regulator [Anaplasma marginale] gi|23168754|gb|AAN08705.1| transcriptional regulator [Anaplasma marginale] gi|23168766|gb|AAN08711.1| transcriptional regulator [Anaplasma marginale str. Washington Okanogan] gi|56388397|gb|AAV86984.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] Length = 187 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q ++ +R G + + E G + I I + LA L + L+ Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89 >gi|22536979|ref|NP_687830.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76787451|ref|YP_329560.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76799305|ref|ZP_00781471.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 18RS21] gi|77405543|ref|ZP_00782634.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae H36B] gi|77410671|ref|ZP_00787030.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|22533834|gb|AAM99702.1|AE014229_3 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76562508|gb|ABA45092.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76585348|gb|EAO61940.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 18RS21] gi|77163207|gb|EAO74159.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae CJB111] gi|77175850|gb|EAO78628.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae H36B] Length = 71 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R + Q E+ TG ++ IS +E G+ T ++ + ++ L Sbjct: 3 LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKISQVFKESLEN 62 Query: 80 LL 81 + Sbjct: 63 VF 64 >gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 210 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +Q E+ R G Q I+ E+G + + +I L+ L + LL Sbjct: 3 AYKISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYLL 61 >gi|315169296|gb|EFU13313.1| helix-turn-helix protein [Enterococcus faecalis TX1341] Length = 445 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 32/56 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 17 KAVRGVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 72 >gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 182 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|300718505|ref|YP_003743308.1| XRE family transcriptional regulator [Erwinia billingiae Eb661] gi|299064341|emb|CAX61461.1| XRE family transcriptional regulator [Erwinia billingiae Eb661] Length = 95 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75 F + R +QK + G A + I+ E G ++D + LA L+ Sbjct: 9 ETFCKRLKQARLAKGFSQKSLGIAAGIDEFVASTRINRYEKGIHEADLDTVQRLAEALEV 68 Query: 76 PLWKLL 81 P+ L Sbjct: 69 PVAYLF 74 >gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301] Length = 223 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + IRK+ +TQ+++ R G ++ +S +ETGK+ ++ N IL L+ L Sbjct: 3 ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWL 59 >gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 232 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ + +S ETG + ++ +I +A D + ++L Sbjct: 7 GEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMNMPDLSVLIQMAEFYDVEVKEIL 65 >gi|260893216|ref|YP_003239313.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865357|gb|ACX52463.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 93 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R R E LTQ+E+ R G QS I+ LE+G+++ + + +A LD Sbjct: 25 PEYRLLAELVRR-RLEKGLTQEELARRIGTRQSAIARLESGRTSPTLRMLKKVADALDAD 83 Query: 77 LWKLLKP 83 L L+P Sbjct: 84 LEVRLRP 90 >gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis M163/99/10] gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] Length = 182 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|226328473|ref|ZP_03803991.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198] gi|225203206|gb|EEG85560.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198] Length = 109 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R++ K+T+ E+ R G S+LE G I +D +I +++ L L+ Sbjct: 6 VGNRIKMLRRQLKITENEMSERLGITMLHYSQLEDGHIKITVDQLITISYILGVTPQSLI 65 >gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +RKE KLTQ+E+ + G + IS E G ++ + L+ + Sbjct: 21 GDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNVS 74 >gi|325662274|ref|ZP_08150889.1| hypothetical protein HMPREF0490_01627 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471526|gb|EGC74747.1| hypothetical protein HMPREF0490_01627 [Lachnospiraceae bacterium 4_1_37FAA] Length = 106 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F +R + ++ +++ G ++S+I+++E GK+ ++ + L Sbjct: 6 LFYKRLTQLRNKQGISARDMSLSLGQSESYINKIENGKALPSMSAFFYICDFLKIHPRDF 65 Query: 81 L 81 Sbjct: 66 F 66 >gi|300174085|ref|YP_003773251.1| putative transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888464|emb|CBL92432.1| Putative transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 193 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D E R +R+ ++ ++ TG + S IS+ E G++ I +MI + Sbjct: 3 DNTFSEIQNLGRLIREMRQSRGVSANDLVQVTGLSHSVISKFERGQTDIQFSSMIKILSA 62 Query: 73 LDTPLWKL 80 + L L Sbjct: 63 MSLTLEDL 70 >gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 191 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + ++ R G +++ I ++E G+S+ + L+ + L+ Sbjct: 13 GARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSMLI 71 >gi|227503434|ref|ZP_03933483.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306836322|ref|ZP_07469302.1| transcriptional regulator [Corynebacterium accolens ATCC 49726] gi|227075937|gb|EEI13900.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304567793|gb|EFM43378.1| transcriptional regulator [Corynebacterium accolens ATCC 49726] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R + +T +E+ + + ++SELE G+ ++ + + + H LD + Sbjct: 37 REALGLTLRAFRADKSVTLRELASVARVSPGYLSELERGRKEVSSELLASVCHALDASVS 96 Query: 79 KLL 81 +L Sbjct: 97 DVL 99 >gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82] Length = 216 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RKE K+ Q + G + IS+ E ++ N +N++ LA+ L Sbjct: 4 QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDY 63 Query: 80 LLK 82 L+K Sbjct: 64 LIK 66 >gi|118589234|ref|ZP_01546640.1| transcriptional regulator, XRE family protein [Stappia aggregata IAM 12614] gi|118437934|gb|EAV44569.1| transcriptional regulator, XRE family protein [Stappia aggregata IAM 12614] Length = 272 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +++Q + + +Q +S LE+G+S + D ++ LA L+ PL + Sbjct: 12 LRQWRQHRRMSQLALASEADISQRHLSFLESGRSRPSRDMVMHLAGHLNIPLRE 65 >gi|222055496|ref|YP_002537858.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564785|gb|ACM20757.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 117 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHT 72 L E F++ F R A +TQ E+ R G QS I+ LE+ GK + +I + AH Sbjct: 23 ALDEEFRFLDEFLKARAAAGVTQAEVAERIGTTQSAIARLESGGGKHSPSIATLQKYAHA 82 Query: 73 LD 74 L Sbjct: 83 LG 84 >gi|111656768|ref|ZP_01407642.1| hypothetical protein SpneT_02001945 [Streptococcus pneumoniae TIGR4] Length = 73 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ L QK+I F S +++E G+ + D ++ L+ D LL Sbjct: 3 RRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60 >gi|58699926|ref|ZP_00374515.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533557|gb|EAL57967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 293 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + TQK++ ++ G I E E G +TI D + +A L + LL Sbjct: 184 GQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 242 Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQ E+ + G ++ E G I I+ + ++A L LL Sbjct: 30 GQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 88 >gi|323498569|ref|ZP_08103562.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316458|gb|EGA69476.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 103 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 R+IRK+ +TQ+E+ + G A + IS+ ETGK + + +A L P Sbjct: 7 RRLRHIRKKQGITQEELGYKLGMEPAGASARISQYETGKHAPDYATVKRIADVLQAP 63 >gi|313893962|ref|ZP_07827528.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|313441526|gb|EFR59952.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 91 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ A LTQ+++ ++G QS I+ +E G + +I + +A LD Sbjct: 36 IAKAREAAGLTQRDLAEKSGVPQSTIARIEQG-ANTSISTLCKIAFALDKQ 85 >gi|312873589|ref|ZP_07733636.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090842|gb|EFQ49239.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 228 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF R++ LT +E+ + G A+S IS +G+ I+ + +A+ +T ++ Sbjct: 5 KIIFGQMIDYFRRQNNLTMEELGQKLGKAKSSISRWVSGERYPKIEEIEQIANFFNTDIY 64 Query: 79 KLL 81 L+ Sbjct: 65 TLI 67 >gi|307244174|ref|ZP_07526289.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492324|gb|EFM64362.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 188 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RK LT K+ + +G + + +S+LE G ++ + +A T++T L LL+ Sbjct: 8 NRLIEYRKSNNLTIKDFSDMSGISTALLSQLERGVGNPSLSVLNSIADTMNTSLSSLLE 66 >gi|303248493|ref|ZP_07334751.1| plasmid maintenance system antidote protein, XRE family [Desulfovibrio fructosovorans JJ] gi|302490113|gb|EFL50033.1| plasmid maintenance system antidote protein, XRE family [Desulfovibrio fructosovorans JJ] Length = 119 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 24/56 (42%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R LTQ + TG + ISE+E G+ I N +LA L +LL Sbjct: 62 LAGARYREGLTQIALAEATGIPRRHISEMENGRRPIGKKNARLLAEALKIDPRRLL 117 >gi|300172714|ref|YP_003771879.1| transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887092|emb|CBL91060.1| Transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] Length = 126 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLD 74 + + F + + IR+ T ++ + + +++S++E G ++ + +A L Sbjct: 1 MVTKETFGSQLKKIREIKGFTVRQTAMQGHISPAYLSQIENGNKNIPKVETLYKIASGLR 60 Query: 75 TPLWKLL 81 +L Sbjct: 61 ISNDDIL 67 >gi|269794408|ref|YP_003313863.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096593|gb|ACZ21029.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 64 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R +R+ A L+Q + G ++ I+ +ETGK ++ I +A T + ++ Sbjct: 3 NDVRALREAAGLSQAALGTVLGVSRQTINSIETGKYDPSLPLAIAIARHFTTTVEEIF 60 >gi|240948027|ref|ZP_04752444.1| helix-turn-helix domain-containing protein [Actinobacillus minor NM305] gi|240297643|gb|EER48120.1| helix-turn-helix domain-containing protein [Actinobacillus minor NM305] Length = 148 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 33/59 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR+ + +Q+++ + + + +++E G++ + +D + +A LD + +L++ Sbjct: 5 EKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDVVELIQ 63 >gi|261400045|ref|ZP_05986170.1| DNA-binding protein [Neisseria lactamica ATCC 23970] gi|269210268|gb|EEZ76723.1| DNA-binding protein [Neisseria lactamica ATCC 23970] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|221199730|ref|ZP_03572773.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia multivorans CGD2M] gi|221208665|ref|ZP_03581665.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia multivorans CGD2] gi|221171476|gb|EEE03923.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia multivorans CGD2] gi|221179969|gb|EEE12373.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia multivorans CGD2M] Length = 342 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+EAK T E+ + ++S++E + I+I +++ +A L+ PL L+ Sbjct: 73 GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 131 >gi|184201232|ref|YP_001855439.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201] gi|183581462|dbj|BAG29933.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201] Length = 110 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R++R+ T +E+ + + ++SE+E G+ + + + + LD P+ Sbjct: 5 RQEIGEVLRSVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLASICTALDIPMS 64 Query: 79 KLLK 82 ++L+ Sbjct: 65 QMLR 68 >gi|169342934|ref|ZP_02863962.1| UDP-glucose 6-dehydrogenase [Clostridium perfringens C str. JGS1495] gi|169298843|gb|EDS80917.1| UDP-glucose 6-dehydrogenase [Clostridium perfringens C str. JGS1495] Length = 492 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RKE +TQ+++ + T ++ IS LE+ +I + L L+ L Sbjct: 8 LLAKKVIESRKEKNITQQQLADLTNINRAMISRLESMDYIPSIPQLEKLGEVLEFEPISL 67 Query: 81 L 81 Sbjct: 68 F 68 >gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 29/58 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R +R++ +TQ+ + G + S+++++E + + + ++ L TL Sbjct: 2 KKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGI 59 >gi|163857884|ref|YP_001632182.1| anaerobic benzoate catabolism transcriptional regulator [Bordetella petrii DSM 12804] gi|163261612|emb|CAP43914.1| aroK1 [Bordetella petrii] Length = 302 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 11 LSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 L R R +R +T+K + TG ++ ++ LE G +I Sbjct: 5 LDKESPESRREPFLVALGERVRRLRAIRGMTRKSLSQATGVSERHLANLEHGVGNASILV 64 Query: 66 MIILAHTLDTPLWKLL 81 ++ +A + L +L+ Sbjct: 65 LLQIAKAFNCALAELV 80 >gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195] gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195] gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678] Length = 229 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + RKE TQ I + G ++ +S E+G ++ +N+ LA L L Sbjct: 1 MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|149915319|ref|ZP_01903846.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149810608|gb|EDM70449.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 466 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 29/65 (44%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +++ R R+ LTQK+ + G + +++++E ++ ++ LA Sbjct: 2 PTQKLYAGAKLRETRQRLGLTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGF 61 Query: 76 PLWKL 80 + +L Sbjct: 62 DVTEL 66 >gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185] gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185] Length = 229 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + RKE TQ I + G ++ +S E+G ++ +N+ LA L L Sbjct: 1 MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|110679476|ref|YP_682483.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109455592|gb|ABG31797.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 468 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +R+ TQ E+ + G + ++I+ LE + ++++ ++ L + Sbjct: 3 KTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWR 62 Query: 79 KLL 81 L+ Sbjct: 63 SLV 65 >gi|302670073|ref|YP_003830033.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394546|gb|ADL33451.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 90 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R E K+TQ+E+ ++G QS IS +E G ++ + LA L L Sbjct: 36 AARIEKKMTQQELSQKSGVRQSNISRIEKGVCVPTLNTLNELAKGLGKRL 85 >gi|296110822|ref|YP_003621203.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] gi|295832353|gb|ADG40234.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] Length = 93 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 NN R +R K+TQ ++ QS I+ E G +IDN++ +A L Sbjct: 27 GNNIRYLRYANKITQYQLAKILHVTQSTIAHYENGTRIPDIDNLMDIARNLG 78 >gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 345 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKEA +TQ+E+ NR G +++ E S +I+ + +A LD L LL Sbjct: 7 IKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLL 62 >gi|229589661|ref|YP_002871780.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361527|emb|CAY48403.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 185 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E ++RK KLT ++ + + ++S++E G S + ++ ++H LD Sbjct: 4 QEELATLAALIHDLRKHKKLTLAQLAQKIERSVGFLSQVERGLSRPTVADLTAISHALDV 63 Query: 76 P 76 P Sbjct: 64 P 64 >gi|228477777|ref|ZP_04062405.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250469|gb|EEK09683.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R+ +TQ+++ ++ G + I LE + +++ + +A + + +L + Sbjct: 10 NLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEELFR 67 >gi|163745005|ref|ZP_02152365.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanibulbus indolifex HEL-45] gi|161381823|gb|EDQ06232.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanibulbus indolifex HEL-45] Length = 196 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 25/51 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R LT +++ +G + ++S++E G +T ++ + +A L Sbjct: 1 MRKQRHRLSLTLQQLGEASGVSVGYLSQVERGLATPSLGTLSQIAVALQVE 51 >gi|153854463|ref|ZP_01995741.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814] gi|149752989|gb|EDM62920.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814] Length = 499 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N N RKE +TQ+++ + TG +S IS LE +I + L TLD L Sbjct: 14 LLANLVTNRRKEKHMTQQDLADITGINRSMISRLEKEDFIPSIPQLEQLGETLDFEPQTL 73 Query: 81 L 81 Sbjct: 74 F 74 >gi|312887802|ref|ZP_07747389.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299621|gb|EFQ76703.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 100 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 17 RERMIFVNNFRN---------IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 +R F F RK LTQ E+ ++ G +++IS++E + + + Sbjct: 24 PKREKFEQGFEEFKLGVLIHEARKAKGLTQTELADKCGTTKAYISKVENDVQDVRVATLR 83 Query: 68 IL 69 + Sbjct: 84 KI 85 >gi|296157333|ref|ZP_06840169.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295892669|gb|EFG72451.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 229 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 34/76 (44%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P ++ + N +R E +L+ + +G +++ ++++E+ +S +I + Sbjct: 17 ASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVL 76 Query: 67 IILAHTLDTPLWKLLK 82 +A L + L+ Sbjct: 77 CKVAAALKVSVAAFLR 92 >gi|222086297|ref|YP_002544830.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221723745|gb|ACM26901.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 267 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R + + R R+ +L+Q E +Q +S +E+G++ + D ++ LA LD Sbjct: 3 MPARSL-GDYLREWRQRRRLSQLEFALEAEISQRHLSFIESGRALPSRDMLMHLAERLDV 61 Query: 76 PLWK 79 PL Sbjct: 62 PLRD 65 >gi|221141579|ref|ZP_03566072.1| hypothetical protein SauraJ_08055 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302344735|ref|YP_003813104.1| hypothetical protein pSK1_p06 [Staphylococcus aureus] gi|281336089|gb|ADA62638.1| hypothetical protein SAP025A_019 [Staphylococcus epidermidis] gi|282166337|gb|ADA80353.1| hypothetical protein SAP109A_023 [Staphylococcus epidermidis] gi|282166672|gb|ADA80688.1| hypothetical protein SAP098A_019 [Staphylococcus aureus] gi|282166876|gb|ADA80892.1| hypothetical protein SAP100A_001 [Staphylococcus aureus] gi|300492209|gb|ADK23690.1| hypothetical protein [Staphylococcus aureus] gi|302751831|gb|ADL66008.1| putative XRE-family transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 203 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK+ LTQ+ + + I +E G+ ++ + + +++ LD + +L + Sbjct: 4 SKIAKLRKDKSLTQENLAEKACVTVRTIQRIEAGEE-VSSETLKNISNALDVTINELFE 61 >gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] Length = 201 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ A LTQ E+ + + E G + ++ ++ ++A L+T + LL Sbjct: 7 VGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNTLPDVQSLQLVAKALNTKVDGLL 66 >gi|153956442|ref|YP_001397207.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856749|ref|YP_002473871.1| hypothetical protein CKR_3406 [Clostridium kluyveri NBRC 12016] gi|302387477|ref|YP_003823299.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|146349300|gb|EDK35836.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570473|dbj|BAH08457.1| hypothetical protein [Clostridium kluyveri NBRC 12016] gi|302198105|gb|ADL05676.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 107 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 21/62 (33%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R A +TQ + + G +I +E + ++ + L + Sbjct: 8 FGQTIKEARIAAGMTQDALAEQVGVTPRYIMAIENENKHPRMPVLLKIIRALKISADTIF 67 Query: 82 KP 83 P Sbjct: 68 YP 69 >gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN +RK A TQ+++ + G ++ I+ +E G + + ++ TL + L + Sbjct: 10 NNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYVPSTVLALKISQTLKCTVDDLFQ 68 >gi|72162200|ref|YP_289857.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915932|gb|AAZ55834.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 171 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTG-----FAQSWISELETGKSTIN 62 P + + + N R IR+ L+ E+ R I+ +E G+ ++ Sbjct: 6 TPRRPNTLGPTGLQVAANIRRIRQLRGLSTTEMARRLTERGRPITAVAITNVEHGRRRVD 65 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 +D+++ A LD LL P Sbjct: 66 VDDLVAFAAVLDVSPSALLLP 86 >gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + ++A + + Sbjct: 2 EKLLIGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTSYPDITLLPVIATFFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|148256218|ref|YP_001240803.1| HTH-type transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408391|gb|ABQ36897.1| putative HTH-type transcriptional regulator (with cupin domain) [Bradyrhizobium sp. BTAi1] Length = 214 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 29/47 (61%) Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + + ++G +++ + ++ETGKS I + +A+ LD P +LL+ Sbjct: 47 SLERLARQSGVSRAMLGQIETGKSVPTISVLWKIANALDVPFAQLLE 93 >gi|238798535|ref|ZP_04642013.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia mollaretii ATCC 43969] gi|238717622|gb|EEQ09460.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia mollaretii ATCC 43969] Length = 196 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R ++T K++ + G ++S +S+LE ++ ++ + LA L+T + L+ Sbjct: 15 LGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|150390882|ref|YP_001320931.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950744|gb|ABR49272.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 131 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R + ++TQK++ + +Q+ IS+LE+G+ I + ++ L L+K Sbjct: 44 RIDQEITQKQLAEKLKVSQAMISKLESGEYNPTIGQLWKISKKLGWTFEVLMK 96 >gi|325831949|ref|ZP_08165046.1| hypothetical protein HMPREF9404_4290 [Eggerthella sp. HGA1] gi|325486270|gb|EGC88722.1| hypothetical protein HMPREF9404_4290 [Eggerthella sp. HGA1] Length = 50 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 26/47 (55%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q G ++ ++ ++E+GK+ +D + +A LDT + +L Sbjct: 1 MSQTSFALMVGVSRKYLIDIESGKANPTVDMLERIAGGLDTTVGRLF 47 >gi|309798715|ref|ZP_07692980.1| putative transcriptional regulator [Streptococcus infantis SK1302] gi|308117658|gb|EFO55069.1| putative transcriptional regulator [Streptococcus infantis SK1302] Length = 116 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L + Sbjct: 13 QKVKYFRTQKKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIVALKMTPEEFF 70 >gi|307331049|ref|ZP_07610179.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306883346|gb|EFN14402.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 284 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Query: 6 RDEPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 RD+ ++ E F + +R EA LTQ++ R ++ ++++++E G+ Sbjct: 5 RDDMRMTKDSEPETSESLKTFGAVLKALRDEAGLTQEQFAPRVRYSATYVAKMEQGRRFP 64 Query: 62 NIDNMIILAHTLDTPLWKLL 81 + + L P ++L Sbjct: 65 PKELIPRAEEVLGAPAVRVL 84 >gi|322433358|ref|YP_004210575.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321165747|gb|ADW71448.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 84 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + E +QK++ G ++ ++E GK I + + ++ L + +L Sbjct: 21 LGERIYALITERGWSQKKLAELAGIHADYVHDVEYGKKEICLRMLARISAALGCKMSDML 80 Query: 82 K 82 + Sbjct: 81 E 81 >gi|270289873|ref|ZP_06196099.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281410|gb|EFA27242.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] Length = 188 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R++ LTQ E+ ++ + IS E GK+ NI + LA + + Sbjct: 1 MSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDE 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|253991420|ref|YP_003042776.1| hypothetical protein PAU_03947 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782870|emb|CAQ86035.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 88 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R L+Q +I+N TG ++ +S +E G+ I++ ++ + L+ P+ + Sbjct: 19 IVGSRLMVARSHRGLSQNDIQNATGIDRATLSRIENGRQHISLYQLLQILTVLEIPIEEF 78 Query: 81 LK 82 L+ Sbjct: 79 LR 80 >gi|190571946|ref|YP_001967670.1| conjugal transfer protein TrbA [Comamonas testosteroni CNB-1] gi|311109687|ref|YP_003982539.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans A8] gi|119943684|gb|ABM06206.1| TrbA [Comamonas testosteroni CNB-1] gi|310764376|gb|ADP19824.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans A8] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 32/59 (54%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 A IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 3 KATPLYNYIFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMQDIAK 61 >gi|149179909|ref|ZP_01858414.1| transcriptional activator [Bacillus sp. SG-1] gi|148852101|gb|EDL66246.1| transcriptional activator [Bacillus sp. SG-1] Length = 418 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M + R R + KLTQ+E+ TG + S++S++E ++T + + + +L L L Sbjct: 1 MTIGSKIRYHRMKKKLTQEELA--TGILSVSYLSKIENNQTTASSEVIELLCKRLGIELL 58 Query: 79 K 79 + Sbjct: 59 Q 59 >gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86] gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56] Length = 136 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R++A LT K++ + G +S IS E+G ++ ++++ LA + + L+ Sbjct: 8 FSLMVKTLRQQAGLTMKQLAEKMGKTESAISRWESGDNSPKLEDINALADFFNVDMNTLV 67 >gi|119503754|ref|ZP_01625836.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] gi|119460262|gb|EAW41355.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] Length = 66 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N + +R E TQ ++ + + ++ +E GK ++ +A P+ + P Sbjct: 3 NRLKVLRAEHDWTQADLAAQLNVTRQTVNAIEKGKYDPSLPLAFKIAGVFQMPIDHIFFP 62 >gi|91218312|ref|ZP_01255257.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755] gi|91183521|gb|EAS69919.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755] Length = 103 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 RN R+E LTQ+++ +++IS +E S + + + + Sbjct: 45 LRNAREEKNLTQEQLGELIDKKRTYISRVENNGSNLTLKTLFDIVE 90 >gi|72161652|ref|YP_289309.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915384|gb|AAZ55286.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 267 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R+ A L+Q+E+ + + +S +E G I D++ + L P Sbjct: 12 GQKIREHRQHAGLSQEELAKLVALSPTMLSAMERGTRGIKRDHVERIDAALGIP 65 >gi|15672114|ref|NP_266288.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12722980|gb|AAK04230.1|AE006251_6 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] Length = 106 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +N R R A LTQKE+ ++ + E G+ +++ + +A+ + LL Sbjct: 40 FSSNLRQKRAIAGLTQKELGKLLYSSKQAVCNWEHGRREPSLEVVQEMANVFKCSIDDLL 99 Query: 82 K 82 K Sbjct: 100 K 100 >gi|154247535|ref|YP_001418493.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161620|gb|ABS68836.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 130 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P L D ++ + R + ++Q+ + G I + E GK+ I +++ Sbjct: 2 PTLKDKTKELDVVIGFRVKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLVM 61 Query: 69 LAHTLDTPLWKLLK 82 +A L LL+ Sbjct: 62 IADFLKVSALFLLR 75 >gi|329577950|gb|EGG59368.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 365 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 3 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54 >gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 167 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC 13813] Length = 230 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +N + +R E + +Q E+ N ++ ++ E+GKS N N+ LA LD P Sbjct: 4 GSNLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVP 57 >gi|312887654|ref|ZP_07747246.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299869|gb|EFQ76946.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 124 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 13/77 (16%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP+R + + F+ RK LTQ +I + G Q + + E+G + Sbjct: 1 MPKRPVTD-------------YAKRFKIFRKYKDLTQIQIADVLGVTQPAVQKWESGATD 47 Query: 61 INIDNMIILAHTLDTPL 77 ++I+ + L L+ L Sbjct: 48 LSIEIIQKLRDKLNMSL 64 >gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 345 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKEA +TQ+E+ NR G +++ E S +I+ + +A LD L LL Sbjct: 7 IKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLL 62 >gi|271499443|ref|YP_003332468.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|307129761|ref|YP_003881777.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937] gi|270342998|gb|ACZ75763.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] gi|306527290|gb|ADM97220.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937] Length = 88 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +A LTQ+++ G A+S IS+ E+G + M A L+ P Sbjct: 5 RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP 60 >gi|259416970|ref|ZP_05740890.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348409|gb|EEW60186.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 462 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R LTQK+ + G + +++++E ++ ++ LA Sbjct: 3 TQKLYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|302531671|ref|ZP_07284013.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302440566|gb|EFL12382.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 193 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R ++ E+ TG + S +S LE+G+ +++ ++ + L P + Sbjct: 12 EQIAPRLRRARDHRGVSLAELSRSTGISTSTLSRLESGQRKPSLELLLPITAALGIPFDE 71 Query: 80 LL 81 ++ Sbjct: 72 IV 73 >gi|304315787|ref|YP_003850932.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777289|gb|ADL67848.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 62 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ KLTQK+I N + S+ S +E G ++ +A + + +L Sbjct: 6 KLIQERKKQKLTQKDIANILEISLSYYSAIERGIRNPTLELAKKIAELFNKTIEELF 62 >gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 96 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +++RKE +TQ ++ ++S ++ E ++ ++ ++ + L L Sbjct: 1 MLGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVEPSLSVLVKISDRFNVSLDYL 60 Query: 81 LK 82 L+ Sbjct: 61 LE 62 >gi|229113235|ref|ZP_04242730.1| hypothetical protein bcere0018_54440 [Bacillus cereus Rock1-15] gi|228670261|gb|EEL25609.1| hypothetical protein bcere0018_54440 [Bacillus cereus Rock1-15] Length = 60 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q+++ N+ G + I LE GK + ++ L+ P+ L Sbjct: 1 MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDISKVLEAPIETLF 56 >gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 134 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78 M F + +R++ LTQ E+ ++ G IS ET G D +A + + Sbjct: 1 MSFGAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60 Query: 79 KLLK 82 LL Sbjct: 61 FLLT 64 >gi|227358409|ref|ZP_03842744.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227161367|gb|EEI46420.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 104 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I RKE +T +EI + +Q S +E G + I ++++ +A L +L Sbjct: 10 IIAYRIMQKRKELGMTGREIAHSLEISQQHYSRIENGHTKITVEHLFSIAFILGVKPKEL 69 Query: 81 L 81 L Sbjct: 70 L 70 >gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] Length = 300 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+A ++Q+++ R ++ +++ ET T +++N+ ++ L L Sbjct: 1 MLSETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGTPDVENLRAISALFQISLDDL 60 Query: 81 LK 82 L+ Sbjct: 61 LE 62 >gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 135 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ + TQ+++ + ++S IS+ E G ++ ++ L + LL Sbjct: 4 LGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLL 63 >gi|149019378|ref|ZP_01834740.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] gi|147931248|gb|EDK82227.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] Length = 69 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRYLGKTLDQLF 62 >gi|172064970|ref|YP_001815682.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997212|gb|ACB68129.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 304 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A+L +++ R +++ + +LE G+ + ID + LA L L+ Sbjct: 22 GERLRAYRMAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLM 79 >gi|99035917|ref|ZP_01314965.1| hypothetical protein Wendoof_01000195 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R E TQK++ + G I + E G I+I+ + +A L + L+ Sbjct: 13 VGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGALSVSITDLI 72 Query: 82 K 82 Sbjct: 73 T 73 Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G+ + + +A L + LL Sbjct: 166 VGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRVATPLGKLYEIAEALSISITDLL 225 Query: 82 K 82 Sbjct: 226 T 226 >gi|86159944|ref|YP_466729.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776455|gb|ABC83292.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 265 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + A+ F R R+ L+Q E+ R G Q +S +E G+S + +I LA Sbjct: 1 MPIALPATATSFPGALRRWRRVRSLSQLELALRAGTTQRHLSFIEQGRSHPGREMVIRLA 60 Query: 71 HTLDTPLWK 79 TL L + Sbjct: 61 ETLGLTLRE 69 >gi|83859767|ref|ZP_00953287.1| hypothetical protein OA2633_07199 [Oceanicaulis alexandrii HTCC2633] gi|83852126|gb|EAP89980.1| hypothetical protein OA2633_07199 [Oceanicaulis alexandrii HTCC2633] Length = 149 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R + +Q+++ +G ++ I E G T +++ + LA + D ++ Sbjct: 7 LRALRLDKGWSQEQLAAISGLSERTIQRAERGD-TPSLETVGALAASFDLSSAQM 60 >gi|331086447|ref|ZP_08335527.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406213|gb|EGG85736.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 22/55 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R ++Q+ + +G S I + E G D ++ +A+ L + Sbjct: 4 GEKIKYFRNMRGISQETLGQLSGINSSTIKKYEYGIRNPKPDQLLKIANALGISI 58 >gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 120 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R + TQ E+ N+ ++ I+ E G+ +I + L++ + L L+ Sbjct: 5 GSKIRVERNKHGWTQVELANKMNLSKQTINNWEHGRRIPDIQTLKELSNLFNVSLEYLV 63 >gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 169 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE LTQ+ + + G + E GK+ I D LA + LL Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQTLADFFGVSVGYLL 59 >gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 114 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R++ KLTQ E+ G + +S E+ ++ + + +I L+ D LL Sbjct: 3 FNIRLKQLRQKHKLTQSELAEILGLKPTAVSNYESRRNEPSFEKLIALSRYFDVSCDYLL 62 >gi|158348425|ref|YP_001522916.1| Predicted transcription regulator [Bacillus virus 1] gi|190410765|gb|ACE78285.1| predicted transcription regulator [Bacillus virus 1] Length = 78 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWKLL 81 R++R+ +TQ+E+ G + I ++E G K + + M +A + + Sbjct: 5 LRDVRRSFDITQEELAKAVGTTRQTIHKIERGKLKRAPSYELMYAIAQFFGKKVEDIF 62 >gi|147668711|ref|YP_001213529.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269659|gb|ABQ16651.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 61 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R+ R + +Q E+ + G ++ LE GK + + LA L+ + Sbjct: 3 KTLRDHRLDKFWSQAELAKQAGIGADTVNRLENGKQNPSFITIRKLAKALNVKPEDI 59 >gi|154251324|ref|YP_001412148.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155274|gb|ABS62491.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 263 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 14 AILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 AI+ R+ N R R+ + E+ G + ++SE+ETGK M +A Sbjct: 58 AIVAHRIADGENPVRVWREYRGMKAIELARAAGMSAPYLSEIETGKKDGTFRTMAGIAEV 117 Query: 73 LDTPLWKLLKP 83 L L L P Sbjct: 118 LRVSLDDLAPP 128 >gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] Length = 269 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 22/61 (36%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RKE LTQ+E+ I +E G T + + L + + Sbjct: 6 LGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVTPRSYTIKNILSALGKSIDDVF 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|49081996|gb|AAT50398.1| PA0906 [synthetic construct] Length = 238 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 + RK A L+Q ++ G Q+ IS+LE GKS + +A PLW Sbjct: 6 RIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRAT-SFVAQIAGACGVNPLW 59 >gi|238786359|ref|ZP_04630292.1| DNA-binding phage-related protein [Yersinia bercovieri ATCC 43970] gi|238712730|gb|EEQ04809.1| DNA-binding phage-related protein [Yersinia bercovieri ATCC 43970] Length = 100 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + ++ RK LTQ+++ + G + IS +E G S N+ + A L Sbjct: 34 RKALMQQLKDARKALHLTQQDVAQKIGTQKQNISRMENGGSVPNLATLSRYAAALG 89 >gi|172057739|ref|YP_001814199.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990260|gb|ACB61182.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 294 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76 N + IR+E TQ E+ G +Q+ IS++E G+++ +D + +A P Sbjct: 9 GNEIKRIRQERNWTQSELCQ--GICSQAEISKIENGRNSPTVDLLQQIAERFHVP 61 >gi|110638280|ref|YP_678489.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280961|gb|ABG59147.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 259 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + RK+ TQ+++ R G +S + E G++ ++ + ILA +T + L Sbjct: 3 VISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTILARLFETTVDAL 62 Query: 81 L 81 + Sbjct: 63 I 63 >gi|330967852|gb|EGH68112.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 125 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P+ D + ++ R +N + +R + L+ + TG ++ ++++E+G+S Sbjct: 14 PQGSSDSTQSDEDLIGPR--VAHNLQRLRSKRYLSMDALARLTGVNRAMLAQIESGRSVP 71 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 +I + +A L + L+ Sbjct: 72 SIKVLCKIAKGLKVSIAAFLE 92 >gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 205 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + + G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|325107714|ref|YP_004268782.1| hypothetical protein Plabr_1144 [Planctomyces brasiliensis DSM 5305] gi|324967982|gb|ADY58760.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 109 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST----INIDNMIILAHTLDTPL 77 F R +R+ L+Q+++ + G ++IS++E K + + LA LD Sbjct: 3 FGERLRELRQAKNLSQRDLAEQVGVNFTYISKIENEKLDFAQFPGEELIRKLAKALDADE 62 Query: 78 WKLL 81 +LL Sbjct: 63 DELL 66 >gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 272 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + RKE TQ+E+ + G + +S+ E + ++ + L TL+ + Sbjct: 2 KEKLARSIAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSID 61 Query: 79 KLL 81 KLL Sbjct: 62 KLL 64 >gi|239942022|ref|ZP_04693959.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 268 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + +++ Sbjct: 1 MRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDVRIV 56 >gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 161 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ + ++ Q +S E G + +ID + +++ + P+ + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|168699333|ref|ZP_02731610.1| hypothetical protein GobsU_07427 [Gemmata obscuriglobus UQM 2246] Length = 76 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78 + N + +R + TQ ++ +G S IS++E+G+ + ++ ++ LA+ L + Sbjct: 11 VLAKNAKRMRGDR--TQADLAEASGLTVSQISQIESGRPENPPSVRTLVALANGLGVDVS 68 Query: 79 KLLK 82 +LLK Sbjct: 69 ELLK 72 >gi|149007465|ref|ZP_01831108.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|168484288|ref|ZP_02709240.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|168492034|ref|ZP_02716177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|147761037|gb|EDK68006.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|172042463|gb|EDT50509.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|183573657|gb|EDT94185.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|332071967|gb|EGI82455.1| transcriptional activator [Streptococcus pneumoniae GA17545] gi|332199415|gb|EGJ13492.1| transcriptional activator [Streptococcus pneumoniae GA47368] Length = 303 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|159037281|ref|YP_001536534.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916116|gb|ABV97543.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 397 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R+ A + + T F++ ++S +ETG+ D + H L P+ Sbjct: 19 LGAHLRAAREAAGHSLAGMAALTHFSKPYLSLVETGRRQATPDIVERYEHALGVPI 74 >gi|327402685|ref|YP_004343523.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318193|gb|AEA42685.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 86 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + RK TQ ++ + IS LE G+ + +I + LA L +L Sbjct: 9 LFGEFIKQKRKSLNWTQNDLAEKINNDFQNISRLERGEVSPSIFWISELAKGFGCSLGEL 68 Query: 81 LK 82 + Sbjct: 69 MT 70 >gi|317490202|ref|ZP_07948690.1| hypothetical protein HMPREF1023_02390 [Eggerthella sp. 1_3_56FAA] gi|316910696|gb|EFV32317.1| hypothetical protein HMPREF1023_02390 [Eggerthella sp. 1_3_56FAA] Length = 114 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M ++E L +R+ + +R L+Q + G IS LE G Sbjct: 11 MSEMSKNEKMARKDPLVQRLSADLGSRLLEVRTSEGLSQNTLAEMVGTKHPRISNLEGGL 70 Query: 59 STINIDNMIILAHTLDTPLWKLL 81 + + +++ LA LD +LL Sbjct: 71 VDVRLSDIVKLARALDVNPGELL 93 >gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 128 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+ + +++ G + ++S++E G + + + +A L L Sbjct: 9 LGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAETL 67 >gi|304379184|ref|ZP_07361927.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304342230|gb|EFM08126.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 238 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKIFELAKALNV 57 >gi|291525427|emb|CBK91014.1| Helix-turn-helix [Eubacterium rectale DSM 17629] Length = 112 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + LTQ+++ + +I ++E G+S I++ + + +TL +L Sbjct: 11 GKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANELF 69 >gi|270156583|ref|ZP_06185240.1| helix-turn-helix domain protein [Legionella longbeachae D-4968] gi|289164956|ref|YP_003455094.1| hypothetical protein LLO_1621 [Legionella longbeachae NSW150] gi|269988608|gb|EEZ94862.1| helix-turn-helix domain protein [Legionella longbeachae D-4968] gi|288858129|emb|CBJ11995.1| hypothetical protein LLO_1621 [Legionella longbeachae NSW150] Length = 106 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD---TP 76 M F + ++R ++TQ E+ R G ++ ++S++E + + I ++ L P Sbjct: 22 MTFGSLIHSLRISDEITQVELAKRVGVSKQFLSDVEHNRKDVGIAFAKKISDALGYSIEP 81 Query: 77 LWKLL 81 L +LL Sbjct: 82 LIELL 86 >gi|268595110|ref|ZP_06129277.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268548499|gb|EEZ43917.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] Length = 229 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RK L+Q+ + +QS I+ LE+G N+ LA LD + L Sbjct: 1 MKEARKNKNLSQENLAKLAEVSQSTIAALESG-RNKKATNIAKLAKILDVSAFWL 54 >gi|238923321|ref|YP_002936836.1| hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656] gi|238874995|gb|ACR74702.1| Hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656] Length = 112 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R + LTQ+++ + +I ++E G+S I++ + + +TL +L Sbjct: 11 GKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANELF 69 >gi|229103032|ref|ZP_04233721.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228680447|gb|EEL34635.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] Length = 114 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F +++RK L Q+++ + ++S I+ E G S ++ + LA + L L Sbjct: 4 FSETLKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDVL 62 >gi|261366533|ref|ZP_05979416.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571346|gb|EFB76881.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 124 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK KLTQ+E+ + + + + E G+ + + + L+ L L+ Sbjct: 7 LGRRIQKARKVKKLTQQELADLSHVSLKHVQSCERGEKNPSFEVLRAFGKVLNLSLDSLM 66 >gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 103 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N RKE L+ + ++ +Q IS E G + I ID+++ +A L P+ Sbjct: 6 IIGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMCPIEWF 65 Query: 81 LK 82 K Sbjct: 66 FK 67 >gi|220936034|ref|YP_002514933.1| hypothetical protein Tgr7_2873 [Thioalkalivibrio sp. HL-EbGR7] gi|219997344|gb|ACL73946.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 101 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R R + + Q+ + + G +S + ++E G+ + ++ +A L L+ Sbjct: 25 FGAVVREERTDQGIAQETLAHLAGIERSHMGKIERGEHIPTLPLILKIARALKCSSAHLM 84 >gi|167758281|ref|ZP_02430408.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC 35704] gi|167664178|gb|EDS08308.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC 35704] Length = 67 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IR+E L Q+E+ + ++ I LE G+ +I +A + + Sbjct: 3 NRLEEIRREHGLKQEELADILEVSRQTIGSLENGRYNPSIILAFKIARYFHRNIEDIF 60 >gi|281356298|ref|ZP_06242790.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281316990|gb|EFB01012.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 16 LRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +RE++I + RKE K+T + + +RTG +S++E ++ ++ ++ +A L+ Sbjct: 1 MREQLIALGTRIKMARKERKMTLQTLADRTGLTAGLLSKIENFRTIPSLPVLVDIAAALE 60 Query: 75 TPLWKLLK 82 T L + + Sbjct: 61 TDLAEFFR 68 >gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89] gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1] gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88] gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989] gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89] gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1] gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3] gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989] gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88] gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034] gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146] gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C] gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252] gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167] Length = 216 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RKE K+ Q + G + IS+ E ++ N +N++ LA+ L Sbjct: 4 QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDY 63 Query: 80 LLK 82 L+K Sbjct: 64 LMK 66 >gi|56808631|ref|ZP_00366358.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 195 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLNQLIK 63 >gi|145638927|ref|ZP_01794535.1| possible transcriptional regulator [Haemophilus influenzae PittII] gi|145271899|gb|EDK11808.1| possible transcriptional regulator [Haemophilus influenzae PittII] gi|309750896|gb|ADO80880.1| Putative DNA-binding protein [Haemophilus influenzae R2866] Length = 127 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +L+Q+++ + + S +++E G++ + D ++ +A + L L+ Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62 >gi|329725145|gb|EGG61635.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 112 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N R R + LTQ ++ + ++ IS ETG T D++ +AH L+ + Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 94 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR++ +Q +I G + IS E K+ ++ ++I LA L +L Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTILDSASLIRLADFYQISLDEL 60 >gi|325918018|ref|ZP_08180182.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535782|gb|EGD07614.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 128 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQ----SWISELETGKSTINIDNMIILAHTLD 74 R +F R+ L+Q+ + +R G + S I+ E + I DN+ LA LD Sbjct: 7 RALFAARLAQARQLRGLSQRALGDRMGLGKEKGSSRINRYEHQVTAIGFDNLNTLAQVLD 66 Query: 75 TPLWKLL 81 P+ LL Sbjct: 67 VPVAYLL 73 >gi|325298681|ref|YP_004258598.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318234|gb|ADY36125.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R +++ E+ RTG I +E ++ ++ +A L L Sbjct: 6 IIGEKIKDLRTAKEISIDELAERTGLTAGQIERIENNIDIPSLAPLLKIARALGVRL 62 >gi|302531776|ref|ZP_07284118.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4] gi|302440671|gb|EFL12487.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4] Length = 505 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80 R R+ ++Q+ + + +G +QS++S LE+G + + A L + +L Sbjct: 115 GARLRQAREARGISQQALADESGISQSFLSRLESGARLLTGRGLLETFAEALGCSVAEL 173 >gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 135 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ + TQ+++ + ++S IS+ E G ++ ++ L + LL Sbjct: 4 LGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLL 63 >gi|295093301|emb|CBK82392.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 255 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + L+Q ++ + + +S E G++ N D + +L+ LD + LL Sbjct: 9 ELRTKRGLSQDDLAEKVMVTRQAVSRWENGETVPNTDTLKLLSKELDVSINTLL 62 >gi|282864596|ref|ZP_06273651.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282560535|gb|EFB66082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 203 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ T + TG S +S +ETG+ ++ + LA L +L Sbjct: 14 GPRLRAARERHGATLAGVSCATGVPPSTLSRIETGRRRPTLEVLTRLAKEYGASLDEL 71 >gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 203 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R++ ++QKE+ + G Q +S E G + + +++ L+ P L Sbjct: 2 ERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYL 58 >gi|239944946|ref|ZP_04696883.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239991410|ref|ZP_04712074.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] gi|291448407|ref|ZP_06587797.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291351354|gb|EFE78258.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 282 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ KL+Q ++ R + +S +ETG++ + + ++ LA LD PL Sbjct: 24 LRAWRRRRKLSQLDLALRADSSTRHLSCVETGRARPSRELVLRLAEHLDIPLRD 77 >gi|83590550|ref|YP_430559.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573464|gb|ABC20016.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 67 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +R+E L+Q ++ + G QS + +E G+ + M LA + Sbjct: 3 RFMRNEKLYQLRRERGLSQVKVASAVGITQSAYAMIERGQRYPRKETMKKLADYFGLTVD 62 Query: 79 KLL 81 +L Sbjct: 63 ELF 65 >gi|42519281|ref|NP_965211.1| hypothetical protein LJ1411 [Lactobacillus johnsonii NCC 533] gi|41583569|gb|AAS09177.1| hypothetical protein LJ_1411 [Lactobacillus johnsonii NCC 533] Length = 129 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80 + R+ ++TQ+++ + + ++IS++E G I+I + +A L T + L Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDAIAKALQTSVITL 71 Query: 81 L 81 + Sbjct: 72 I 72 >gi|66045941|ref|YP_235782.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63256648|gb|AAY37744.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 203 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R+ + M + +R+ KL+Q+E+ R+G + IS +E + + Sbjct: 4 PLRRGAASFTGYLSHKATMDTGARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSP 63 Query: 62 NIDNMIILAHTLDTPLWKLLK 82 +I ++ L + L Sbjct: 64 SISSLKKLLEGIPMTLADFFT 84 >gi|15896492|ref|NP_349841.1| LacI/xre family transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15026320|gb|AAK81181.1|AE007820_7 Predicted transcriptional regulator, lacI/xre family [Clostridium acetobutylicum ATCC 824] Length = 243 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR++AKL+QK+ + G A+ +I+E+E G+ + + + Sbjct: 26 GEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVVTESLIHRIKKLYGK 78 >gi|20091114|ref|NP_617189.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19916214|gb|AAM05669.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 79 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R LTQ+ + G + + LE GK ++ +A LDT L +L Sbjct: 15 RIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDELF 71 >gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P] gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P] Length = 257 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +++R KLTQ+ + +S IS E +S+ ID +I + P+ ++K Sbjct: 6 KNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPIDIIIK 64 >gi|319649461|ref|ZP_08003617.1| hypothetical protein HMPREF1013_00221 [Bacillus sp. 2_A_57_CT2] gi|317398623|gb|EFV79305.1| hypothetical protein HMPREF1013_00221 [Bacillus sp. 2_A_57_CT2] Length = 87 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 M F + R+ A LTQ+EI + ++S IS+ ET K T+++ +I A Sbjct: 1 MTFGAVLKACRERAGLTQEEIAEKLHRSRSCISKFETDKKTLDVATLIKWADV 53 >gi|294631570|ref|ZP_06710130.1| regulatory protein [Streptomyces sp. e14] gi|292834903|gb|EFF93252.1| regulatory protein [Streptomyces sp. e14] Length = 282 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S + R R++R +A LT E+ R G+ S LE G++ D++ Sbjct: 6 SSSAQEARERVARRLRDLRADAGLTGTELAVRCGWTHPKTSRLENGRTPPTPDDIRRWCQ 65 Query: 72 TLDTP 76 D Sbjct: 66 ACDAE 70 >gi|317050739|ref|YP_004111855.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945823|gb|ADU65299.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 221 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +L+ +++ G S++ ++ETGK +N+ + LA L+ + L P Sbjct: 17 SKRLSSEKLGEAVGIEGSYVRQIETGKRKLNLIILERLASALEVNIAALFDP 68 >gi|270261258|ref|ZP_06189531.1| putative DNA-binding protein [Serratia odorifera 4Rx13] gi|270044742|gb|EFA17833.1| putative DNA-binding protein [Serratia odorifera 4Rx13] Length = 154 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E +Q+++ G + + +E G+ ++D + +A L + L Sbjct: 5 RIRQLRLEKGWSQEQLATIAGLSTRTVQRIENGEQ-ASLDTLTAIAAALGLLVSDL 59 >gi|257067792|ref|YP_003154047.1| putative transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558610|gb|ACU84457.1| predicted transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 190 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+E +L+ + R+ ++ ++++E G++ ++ + +A L T Sbjct: 11 EQLGERIRAARQELELSVGALAERSDVSRRMLTQIELGQANPSVAILDRIAAGLGTTFAA 70 Query: 80 LL 81 L+ Sbjct: 71 LM 72 >gi|229009876|ref|ZP_04167096.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] gi|228751494|gb|EEM01300.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] Length = 83 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 14 QVRRNGVKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGT 73 Query: 76 PLWKLL 81 + KL Sbjct: 74 TVDKLF 79 >gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 114 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++A L+Q+++ G + I + E G +T+NI + +A L + Sbjct: 14 IRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTTLNIIKLQHIAAALKVAVTDFF 69 >gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ R G +++ I ++E G+S+ + L+ + L+ Sbjct: 15 RIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLI 71 >gi|148380348|ref|YP_001254889.1| DNA-biding phage protein [Clostridium botulinum A str. ATCC 3502] gi|148289832|emb|CAL83940.1| putative DNA-biding phage protein [Clostridium botulinum A str. ATCC 3502] Length = 83 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N RKE ++Q ++ + +QS++S +E + + + +A LD L++ Sbjct: 6 NVEEYRKENFISQNKLAKKINISQSYLSSVEREIKSPTLRMLYRIAEELDVCPRLLIR 63 >gi|332533207|ref|ZP_08409074.1| repressor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037286|gb|EGI73741.1| repressor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 66 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKEA L+Q+++ + ++ IS +ET + T ++ + +A +T + L Sbjct: 3 NKIAKYRKEAGLSQQDLADLIAVSRKTISTVETARFTPSVIIALKIAKHFNTSVESLF 60 >gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 183 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF N + RK+ LTQ ++ N+ + IS ETGK+ +I+N+I+++ L+ L Sbjct: 1 MIFHNLIKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSLDD 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 4 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 63 >gi|320528557|ref|ZP_08029714.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131143|gb|EFW23716.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 145 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + IR KLTQKE+ +G + I E G + N + + +A L+ + Sbjct: 1 MISGKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNKEQLRKIADALNCDIST 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|319938413|ref|ZP_08012808.1| hypothetical protein HMPREF9488_03644 [Coprobacillus sp. 29_1] gi|319806501|gb|EFW03165.1| hypothetical protein HMPREF9488_03644 [Coprobacillus sp. 29_1] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + Q+E+ +R G +S++E G + D + + LD +LL Sbjct: 1 MKQQELADRIGINMQSLSKIERGVNYPTFDTLEKIMEVLDVTPNELL 47 >gi|307325002|ref|ZP_07604207.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889500|gb|EFN20481.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R A L+ E+ R ++ + LE + N ++ LA TL + L+ Sbjct: 11 LAYNVRTARTRAGLSLDELGRRAKVSKGSLFALEKAQGNPNFATLVRLADTLGVSVSALM 70 Query: 82 K 82 + Sbjct: 71 E 71 >gi|300782025|ref|YP_003762316.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299791539|gb|ADJ41914.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 461 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 3 RRKRDEPHLSDAILRERMIFVNN----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 R+ P + R + + ++ ++Q++I TG +QS +SE+ G+ Sbjct: 12 RQSHAVPADAWEQPEMRTALASREISAVYRLLRKHGVSQRQIAAMTGQSQSEVSEILKGR 71 Query: 59 STINIDNMIILAHTLDTP 76 + D + +A L P Sbjct: 72 QVMAYDVLTRIADGLGVP 89 >gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 96 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE L+ + + + G +Q +S E G + I ++ + + L+ P+ Sbjct: 8 GKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIKVNTLYSITQALNIPIDSFF 66 >gi|302522576|ref|ZP_07274918.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302431471|gb|EFL03287.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 279 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMII 68 + R +F + + RK A LTQ+++ G++ IS +E G+ +D Sbjct: 10 PEPSETLR-VFGSVVKAFRKRAGLTQEQLAEGLGYSVDMISSIEQGRRMPQPEFVDATER 68 Query: 69 LAHTLDT 75 + Sbjct: 69 ELDAVGM 75 >gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N + +R + L+QKE+ G + +S E G + + +A +K Sbjct: 1 MSIGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIAD-----HFK 55 Query: 80 LLK 82 +LK Sbjct: 56 ILK 58 >gi|225375005|ref|ZP_03752226.1| hypothetical protein ROSEINA2194_00628 [Roseburia inulinivorans DSM 16841] gi|225213077|gb|EEG95431.1| hypothetical protein ROSEINA2194_00628 [Roseburia inulinivorans DSM 16841] Length = 105 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +F R R++ K+TQ+E+ R + E+E KS + + +++ +D L Sbjct: 6 LFAQKLREKREQKKITQRELAERLNMCTRTVIEIEKCKSNPKFETVALISEEMDISL 62 >gi|222152254|ref|YP_002561429.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113065|emb|CAR40420.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 311 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +RK+ ++T++ + + + + ++ +E+G+S ++ + +A L PL Sbjct: 4 LGLKMKELRKKKQMTREALCGDESELSVRQLARIESGQSNPSLAKALFIAKKLGVPLSDF 63 Query: 81 LKP 83 + P Sbjct: 64 VNP 66 >gi|182438568|ref|YP_001826287.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467084|dbj|BAG21604.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 283 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R+ A LTQ+E+ + +S I+ +E G+ + ++ L L T Sbjct: 5 YGEWLKAQREAAGLTQQELADLAFMTRSHIAHIEAGRRMPSGEDAQRLDRALGT 58 >gi|153805880|ref|ZP_01958548.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185] gi|149130557|gb|EDM21763.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R++ +T +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLREDKSITIEELAQRSGLAMEQIERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] Length = 68 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N+ + +R +TQ+++ + G ++ I +E K ++ LA + + + Sbjct: 3 NHLKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYDPSLSLAFRLARCFGVKIEDIFE 61 >gi|116617234|ref|YP_817605.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432765|ref|ZP_03914730.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096081|gb|ABJ61232.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351479|gb|EEJ41740.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 195 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R+ ++ ++ TG ++S IS+ E G++ I + +MI + + L L Sbjct: 14 LGRLIRGMREARGVSVNDLVRATGLSRSMISKFERGQTDIQLSSMIKIFSAMSLTLDDL 72 >gi|329925525|ref|ZP_08280399.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328939808|gb|EGG36148.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 68 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E R RK LTQ+E+ R+G + + + +E G + +A L+ L Sbjct: 2 ENKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGNRRAEEQMLAQIADVLEITL 61 Query: 78 WKL 80 +L Sbjct: 62 QEL 64 >gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 168 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|320155761|ref|YP_004188140.1| hypothetical protein VVM_01799 [Vibrio vulnificus MO6-24/O] gi|319931073|gb|ADV85937.1| hypothetical protein VVMO6_00915 [Vibrio vulnificus MO6-24/O] Length = 76 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + L+ + + GF++S++ ++E I ++ + LA LD + LL Sbjct: 9 AQNIIDKRTKIGLSSSDASIKAGFSRSYLGKVERDGVRITVEKLYQLARVLDCEVADLL 67 >gi|313887651|ref|ZP_07821333.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846260|gb|EFR33639.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 63 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ + IR + L Q+E+ + ++ ++ +E K ++ LA L+T + KL Sbjct: 3 NHIKEIRGQKGLLQQELADICNVSRQTVNAIENNKYDPTLELAFKLAAALETTVDKLF 60 >gi|302545983|ref|ZP_07298325.1| XRE family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463601|gb|EFL26694.1| XRE family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 524 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76 + + R TQ+ + G + W++++E G+ ID + LA L P Sbjct: 119 DHLSIGERIAFYRNRRGYTQEVLAGLVGHSTDWLAKVERGRRKPPRIDKLGELARVLRVP 178 Query: 77 LWKLL 81 L L+ Sbjct: 179 LGDLI 183 >gi|291301709|ref|YP_003512987.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570929|gb|ADD43894.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 397 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81 R R+ ++TQ + G + + +LE G+ ID+++ +A+ LD P+ L+ Sbjct: 7 GKVIRGGRQRRRMTQAALAESAGVSIDLVRKLEQGQRNSARIDSLMAIANALDMPVGDLI 66 >gi|320006669|gb|ADW01519.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 285 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R L+Q ++ R G Q +S +E+ +S + ++ LA L+ L + Sbjct: 29 FPRALRELRTRRHLSQLDLALRAGTTQRHLSFIESRRSDPGRNMVVRLAEALELSLRE 86 >gi|257891593|ref|ZP_05671246.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257827953|gb|EEV54579.1| transcriptional regulator [Enterococcus faecium 1,231,410] Length = 147 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R + ++ R E ++Q ++ G ++ +++++E G T +I M + L+ Sbjct: 3 QRNLDYRLLKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTASIKTMRKIFDQLE 59 >gi|254719247|ref|ZP_05181058.1| hypothetical protein Bru83_06846 [Brucella sp. 83/13] gi|265984243|ref|ZP_06096978.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837996|ref|ZP_07470854.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264662835|gb|EEZ33096.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406920|gb|EFM63141.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 478 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R IR++ + TQ R G + S+++++E + ++ ++ LA Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61 >gi|228943047|ref|ZP_04105548.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955929|ref|ZP_04117866.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976620|ref|ZP_04137063.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783089|gb|EEM31225.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803756|gb|EEM50438.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816632|gb|EEM62756.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 60 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82 R R + TQ ++ ++G Q IS++E+G+ N+ +A L +L+K Sbjct: 2 IREARLQKGWTQLDLAKKSGVPQPTISQIESGERKYPTYQNIKKIAEALGIKTEELMK 59 >gi|228936772|ref|ZP_04099562.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229199177|ref|ZP_04325858.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228584283|gb|EEK42420.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228822891|gb|EEM68733.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 79 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|226328868|ref|ZP_03804386.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] gi|225202054|gb|EEG84408.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] Length = 112 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + RKE T +I + G +Q S E G + I++ +++LA+ L+TP++ Sbjct: 20 LVGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERGMNKIDLSYLVLLANYLNTPIY 77 >gi|145641622|ref|ZP_01797199.1| possible transcriptional regulator [Haemophilus influenzae R3021] gi|145273669|gb|EDK13538.1| possible transcriptional regulator [Haemophilus influenzae 22.4-21] Length = 127 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +L+Q+++ + + S +++E G++ + D ++ +A + L L+ Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62 >gi|81427688|ref|YP_394685.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609327|emb|CAI54373.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 189 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R + LTQ+ + ++ ++ IS E GK+ ++ ++ +++ D L + Sbjct: 1 MLATTLKKRRIDLHLTQQAVADQLHTSRQTISNWENGKNYPDVPMLVAISNLYDLSLDDM 60 Query: 81 LK 82 LK Sbjct: 61 LK 62 >gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +RKE +TQ E+ + G +Q + E G+ I + ++ +A L + Sbjct: 24 MALGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRRRIKVSSLPSVAQIFSVSLEE 83 Query: 80 LL 81 + Sbjct: 84 VF 85 >gi|77462735|ref|YP_352239.1| MerR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461627|ref|YP_001042741.1| hypothetical protein Rsph17029_0858 [Rhodobacter sphaeroides ATCC 17029] gi|221638596|ref|YP_002524858.1| MerR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332557618|ref|ZP_08411940.1| Transcriptional regulator, MerR family protein [Rhodobacter sphaeroides WS8N] gi|77387153|gb|ABA78338.1| transcriptional regulator, MerR family [Rhodobacter sphaeroides 2.4.1] gi|126103291|gb|ABN75969.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC 17029] gi|221159377|gb|ACM00357.1| Transcriptional regulator, MerR family [Rhodobacter sphaeroides KD131] gi|332275330|gb|EGJ20645.1| Transcriptional regulator, MerR family protein [Rhodobacter sphaeroides WS8N] Length = 461 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R + LTQK R G + +++++E ++ ++ LA + Sbjct: 3 QKLYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDV 62 Query: 78 WKL 80 KL Sbjct: 63 TKL 65 >gi|322386548|ref|ZP_08060175.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] gi|321269467|gb|EFX52400.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] Length = 136 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 34/57 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++IR+ +LTQ+ + R ++S I+ E+GK +I N+I ++ D L +L+K Sbjct: 7 LKDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQLIK 63 >gi|304388922|ref|ZP_07370969.1| DNA-binding protein [Neisseria meningitidis ATCC 13091] gi|304337056|gb|EFM03243.1| DNA-binding protein [Neisseria meningitidis ATCC 13091] Length = 126 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|294023754|ref|YP_003547073.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677534|dbj|BAI99050.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 138 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP R + + + + +++ RK ++TQ ++ + G W+ E+E+G Sbjct: 1 MPLRSTTQVTEPERLGQIKLLSGKIIEERRKHVRMTQSQLAAKVGIGVRWLREIESGNPK 60 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 I+N A L L+ P Sbjct: 61 STIENHFRCAFALGMAASHLIFP 83 >gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] Length = 109 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R++A TQ + G + +S +E G S I+++ + L L +++ Sbjct: 12 GGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGISADRII 70 >gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3 str. Ether] gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 182 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|239991923|ref|ZP_04712587.1| putative DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 273 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R++ +++Q E+ R + IS +ETG+S + D ++ LA LD P+ + Sbjct: 10 LRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEHLDVPVRE 63 >gi|237747834|ref|ZP_04578314.1| transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229379196|gb|EEO29287.1| transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 122 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +R ++TQK++ G Q+ +SE+E G I++D + + Sbjct: 64 GMALRGLRAREEITQKQLAAVLGIQQTRVSEMENGVRPISVDMAKRIGKAYNIS 117 >gi|187939911|gb|ACD39048.1| transcription regulator protein [Pseudomonas aeruginosa] Length = 97 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +RK L+Q+ + + +++++S LE + + + L ++ Sbjct: 1 MTAKHSLATAIRTVRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTLHKLTELCEVMEV 58 Query: 76 PLWKLLK 82 LL Sbjct: 59 HPLTLLT 65 >gi|229917672|ref|YP_002886318.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469101|gb|ACQ70873.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 396 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ K+TQ ++ +S +S +E GK+ ++ ++ LA LD + +L Sbjct: 1 MIGERIKTLRKQKKMTQTQLAEGI-VTKSMLSMIENGKAEASMRSLRELASRLDVSMQQL 59 Query: 81 LK 82 L Sbjct: 60 LT 61 >gi|70731399|ref|YP_261140.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68345698|gb|AAY93304.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R A + E+ R A+S +S+LE G +I+ + LA + + + Sbjct: 16 LLAMAIKRERLNAGFSVSELAKRAAVAKSTLSQLEAGLGNPSIETLWALAQAMGLQVTRF 75 Query: 81 LK 82 + Sbjct: 76 FQ 77 >gi|57239584|ref|YP_180720.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58579573|ref|YP_197785.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|38098396|gb|AAR10929.1| hypothetical transcriptional regulator [Ehrlichia ruminantium] gi|57161663|emb|CAH58593.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58418199|emb|CAI27403.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] Length = 201 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M +K P S + + R ++Q ++ N+ G + + E G + Sbjct: 45 MSGQKSTTPK-SRPHPVD-ECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNR 102 Query: 61 INIDNMIILAHTLDTPLWKLL 81 I I + LA L+ + ++ Sbjct: 103 IVISRLYQLASVLNVEVRDIM 123 >gi|58699142|ref|ZP_00373967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534342|gb|EAL58516.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 312 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 16 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 75 Query: 79 KLL 81 L+ Sbjct: 76 DLI 78 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G+ I ++ + +A TL + LL Sbjct: 173 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISITDLL 231 >gi|315925644|ref|ZP_07921854.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621185|gb|EFV01156.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 235 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R RK+ LT + + ++S +S+ E G +I+I+ + LA L + +LL Sbjct: 9 GHNIRIYRKKNGLTLDALSDLVFKSKSALSKYENGDISIDIETLYELAEALHIHVEQLL 67 >gi|315652878|ref|ZP_07905850.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315484872|gb|EFU75282.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 91 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ A L+Q+++ + QS I+ +E G +I+ + LA L L Sbjct: 36 VAHARQSAGLSQRQLAKISHVPQSTIARIECG-RNTSIETINKLALALGKKL 86 >gi|306833638|ref|ZP_07466765.1| Cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424408|gb|EFM27547.1| Cro/CI family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 74 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQK + + F S +++E G+ ++ D +I L++ + LL Sbjct: 3 RRLRDLREDNDFTQKYVAEKLSFTHSAYAKIERGERILSADVIIKLSNLYNVSTDYLL 60 >gi|295189233|gb|ADF83420.1| putative transcription regulator [Lactobacillus phage LBR48] Length = 127 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 ++ F + + +R E T ++ + + S+ S++E GK + +A L Sbjct: 3 VDKTKFGSQLKKLRNEKGFTVRQAALQANLSNSFWSQVENGKRNIPKPITLEKMAKGLRV 62 Query: 76 PLWKLL 81 ++ Sbjct: 63 SKEQIF 68 >gi|290476510|ref|YP_003469415.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] gi|289175848|emb|CBJ82651.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] Length = 92 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 31/57 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M+ + RKE +T E+ +R +Q +S E G + I++++++ ++ L TP Sbjct: 5 MLVGKRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTP 61 >gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 68 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E ++Q ++ G Q +S ETG+ST M +A + Sbjct: 4 KLKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRPPMMQKIADYFGVSKDDIF 60 >gi|261400347|ref|ZP_05986472.1| helix-turn-helix protein [Neisseria lactamica ATCC 23970] gi|269209981|gb|EEZ76436.1| helix-turn-helix protein [Neisseria lactamica ATCC 23970] Length = 111 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 RK + LTQ ++ R + +S LE G + ++ ++ LA Sbjct: 8 QTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIFGCETAD 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|255025462|ref|ZP_05297448.1| transcriptional repressor, putative [Listeria monocytogenes FSL J2-003] Length = 68 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IR++ +TQ+++ + +Q+ S+ ETGK +I +A D + LL Sbjct: 4 KNIRSIREDNDMTQQQMADLLNVSQNTYSQYETGKIEWTASTLIKIADYFDVSIDYLL 61 >gi|225570227|ref|ZP_03779252.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] gi|225161022|gb|EEG73641.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] Length = 195 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R++ K++Q+E+ + ++ +S ET KS ++ ++IIL++ + L +K Sbjct: 4 GLRIKKLREQQKISQEELALKIFVSRQTVSNWETNKSCPDVKSLIILSNVFNVSLDSFIK 63 >gi|224542424|ref|ZP_03682963.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM 15897] gi|224524655|gb|EEF93760.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM 15897] Length = 117 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQS----WISELETGKSTINIDNMIILAHTL 73 R IF + R++A LTQKE+ G Q I+ E G ++ +A +L Sbjct: 8 ARSIFAQRLKAAREDAGLTQKELGMSVGLPQEAAAVRINRYEKGVHDADLATARRIAQSL 67 Query: 74 DTPLWKL 80 PL L Sbjct: 68 GVPLAFL 74 >gi|170781611|ref|YP_001709943.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156179|emb|CAQ01321.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 102 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T +++ ++ A ++SE+E G+ + + + +A LDTP+ Sbjct: 5 RQEIGDVLRDFRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVADALDTPIS 64 Query: 79 KLLK 82 +++ Sbjct: 65 VIMR 68 >gi|168487127|ref|ZP_02711635.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] gi|183569965|gb|EDT90493.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] Length = 303 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|225165113|ref|ZP_03727276.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] gi|224800308|gb|EEG18707.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] Length = 79 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++ E+ R+G +Q +S +E G +D ++ +A LD L KLL+ Sbjct: 1 MSMGEVAWRSGLSQPMVSYVERGTRMPTLDTLLRMADALDLSLPKLLR 48 >gi|126347615|emb|CAJ89327.1| putative transcriptional regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 194 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R R A L+ E+ R ++ + LE + N ++ LA TL + L+ Sbjct: 11 LAHNVRAARTRAGLSLDELGRRAKVSKGALVALEKAQGNPNFATLVRLADTLGISVSSLM 70 Query: 82 K 82 + Sbjct: 71 E 71 >gi|91772690|ref|YP_565382.1| MerR family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91711705|gb|ABE51632.1| HTH-type transcriptional regulator [Methanococcoides burtonii DSM 6242] Length = 192 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E+ N R R++ +T +E+ N + I +LE G+ ++ ++ +A L Sbjct: 1 MTEKNSVGENIRQFREDRSMTVEELANESQSNVELIEKLEKGELIPSLTPLLKIARALGV 60 Query: 76 PL 77 L Sbjct: 61 RL 62 >gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330] gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457] gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str. Tulya] gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513] gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94] gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13] gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis M292/94/1] gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1 str. Rev.1] gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33] gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1] gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94] gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99] gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94] gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13] gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330] gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94] gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33] gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1] gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13] gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28] gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90] Length = 182 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|313888969|ref|ZP_07822628.1| replication initiation factor [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844955|gb|EFR32357.1| replication initiation factor [Peptoniphilus harei ACS-146-V-Sch2b] Length = 391 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R L+Q + TG + ++S++ETGK + L LW+ L+ Sbjct: 3 QHLKEKRLAYGLSQNRLAIATGITRQYLSDIETGKVKPS--------DELQQSLWETLE 53 >gi|312961427|ref|ZP_07775930.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] gi|311284322|gb|EFQ62900.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] Length = 200 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +T E+ R G ++ + E+E + +I + +A L + ++ Sbjct: 22 VARTLKQARQAQSITLDELSRRAGVSKGMVVEIEKCTANPSIGILCKIAAALGLSVADIV 81 >gi|295106164|emb|CBL03707.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 98 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R T KE+ G ++S++SE+E G + + LD L L Sbjct: 1 MIGETLKKLRGIYGYTAKELSELLGISRSYLSEIENGDKQPTYRLLEKYSDILDIKLSSL 60 Query: 81 L 81 + Sbjct: 61 M 61 >gi|269215841|ref|ZP_06159695.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130791|gb|EEZ61867.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 72 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 20/57 (35%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q ++ G + I +E G ++ I + L L L Sbjct: 8 RMKAARAARDMSQGDLAAAVGATRQTIGLIEAGGYNPTLNLCIAICRALGCTLNDLF 64 >gi|302873084|ref|YP_003841717.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688759|ref|ZP_07631205.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302575941|gb|ADL49953.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 118 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+E ++ ++S+ ++E G+ N+ + L+ P+ L Sbjct: 5 KIKELRKEMGLTQEEFASKLEISRSYYCDIERGRLKGTNVKIISKLSDVTGKPMEYFL 62 >gi|241765791|ref|ZP_04763733.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241364329|gb|EER59474.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 87 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RK LTQ + +R G +QS +S LE ++++ ++ L L Sbjct: 14 LGTVLQAARKAQGLTQSALASRVGLSQSRVSHLELNAHELSVEQLLAWCAALGLEL 69 >gi|170702549|ref|ZP_02893425.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170132537|gb|EDT00989.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 304 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A+L +++ R +++ + +LE G+ + ID + LA L L+ Sbjct: 22 GERLRAYRMAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLM 79 >gi|206971583|ref|ZP_03232533.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206733568|gb|EDZ50740.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 63 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R E T KE+ G + + +E GK D ++ +A L L Sbjct: 2 KTLKQLRVEQGYTCKEVAEAVGITEVYYWYIENGKRRPYYDLIVKIADFLKVKL 55 >gi|15609882|ref|NP_217261.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15842285|ref|NP_337322.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31793919|ref|NP_856412.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|121638623|ref|YP_978847.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662587|ref|YP_001284110.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148823933|ref|YP_001288687.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167966752|ref|ZP_02549029.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215404713|ref|ZP_03416894.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215412559|ref|ZP_03421287.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215431685|ref|ZP_03429604.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215446996|ref|ZP_03433748.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218754485|ref|ZP_03533281.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219558754|ref|ZP_03537830.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224991115|ref|YP_002645804.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253798173|ref|YP_003031174.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254232844|ref|ZP_04926171.1| hypothetical protein TBCG_02682 [Mycobacterium tuberculosis C] gi|254551804|ref|ZP_05142251.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187762|ref|ZP_05765236.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260201873|ref|ZP_05769364.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260206056|ref|ZP_05773547.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289444289|ref|ZP_06434033.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289448401|ref|ZP_06438145.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289570923|ref|ZP_06451150.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289575442|ref|ZP_06455669.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289746548|ref|ZP_06505926.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289754850|ref|ZP_06514228.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289758872|ref|ZP_06518250.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289762917|ref|ZP_06522295.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|294994163|ref|ZP_06799854.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297635354|ref|ZP_06953134.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297732351|ref|ZP_06961469.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298526212|ref|ZP_07013621.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|306777026|ref|ZP_07415363.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306780929|ref|ZP_07419266.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306785555|ref|ZP_07423877.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306790151|ref|ZP_07428473.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306794234|ref|ZP_07432536.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306798652|ref|ZP_07436954.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306804508|ref|ZP_07441176.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306807452|ref|ZP_07444120.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306968808|ref|ZP_07481469.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306973141|ref|ZP_07485802.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307080850|ref|ZP_07490020.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|313659684|ref|ZP_07816564.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|2624267|emb|CAA15541.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13882578|gb|AAK47136.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31619513|emb|CAD94951.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] gi|121494271|emb|CAL72749.1| Possible transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601903|gb|EAY60913.1| hypothetical protein TBCG_02682 [Mycobacterium tuberculosis C] gi|148506739|gb|ABQ74548.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148722460|gb|ABR07085.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224774230|dbj|BAH27036.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319676|gb|ACT24279.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289417208|gb|EFD14448.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289421359|gb|EFD18560.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289539873|gb|EFD44451.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289544677|gb|EFD48325.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289687076|gb|EFD54564.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289695437|gb|EFD62866.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289710423|gb|EFD74439.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289714436|gb|EFD78448.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298496006|gb|EFI31300.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|308214538|gb|EFO73937.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308326186|gb|EFP15037.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308329740|gb|EFP18591.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308333347|gb|EFP22198.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308337371|gb|EFP26222.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308341034|gb|EFP29885.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308346181|gb|EFP35032.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308348839|gb|EFP37690.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308353560|gb|EFP42411.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308357403|gb|EFP46254.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308361356|gb|EFP50207.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|326904360|gb|EGE51293.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328457946|gb|AEB03369.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 112 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + L PL Sbjct: 6 REVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLPLS 65 Query: 79 KLL 81 +L Sbjct: 66 VVL 68 >gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC 23330] Length = 206 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N R E L+Q + G QS I ++E G + ++ LAH L T + Sbjct: 1 MSFNERVKNRRLELGLSQAALGKLAGVPQSTIGQIENG-RNKSSTKILELAHALQTTVEY 59 Query: 80 LL 81 L+ Sbjct: 60 LV 61 >gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 168 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 138 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R+ A+L+ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67 >gi|313499638|gb|ADR61004.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 185 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +RK ++T K++ +G S +S++E + +++ + + A L+ + +L + Sbjct: 2 GQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLFR 61 >gi|312621117|ref|YP_003993845.1| hypothetical protein pPHDD1_p163 [Photobacterium damselae subsp. damselae] gi|311872838|emb|CBX86929.1| hypothetical protein [Photobacterium damselae subsp. damselae] Length = 91 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N+ ++R+++ LTQ E+ + G IS LE+G+S ++ ++ A L Sbjct: 31 NSLISMREKSGLTQDEVAEKMGTKAPNISRLESGRSNPSLKTLVSYAQACGFKL 84 >gi|302672228|ref|YP_003832188.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396701|gb|ADL35606.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 277 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE LTQ +I IS+ ETGK+ + M+ L L + +LL Sbjct: 7 GKFIAGLRKEKGLTQAQIAEMLNITDRAISKWETGKNMPDSSIMLELCGILGITVNELL 65 >gi|257053231|ref|YP_003131064.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256691994|gb|ACV12331.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 75 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ R+ + L+Q+ + + I+ +E + +++ + LA + P+ L P Sbjct: 3 NSLTEYREASGLSQRALAEHVAVTRQTINAVEGNRYDPSVELVFKLAAFFEVPVEDLFHP 62 >gi|238921821|ref|YP_002935335.1| hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC 27750] gi|238873493|gb|ACR73201.1| Hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC 27750] Length = 154 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ K+T K++ ++G S I + ET ++ + +A LD +++ L Sbjct: 14 LARTIRKYREARKMTMKQLSIKSGIKLSTIKKYETDNRNPKLEQLEKIAAALDVSVFEFL 73 >gi|238019742|ref|ZP_04600168.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC 17748] gi|237863266|gb|EEP64556.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC 17748] Length = 91 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%) Query: 4 RKRDEPHLSDAILRERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + R+ P L+++ L E+ N R+ A LTQ+++ ++G QS I+ +E G + Sbjct: 12 KDRNNPTLTESYLEEKAKLENALAVLKAREAAGLTQRDLAKKSGVPQSTIARIEKG-ANT 70 Query: 62 NIDNMIILAHTLDTP 76 ++ M +A LD Sbjct: 71 SLSTMCKIAFALDKQ 85 >gi|237794998|ref|YP_002862550.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] gi|229264088|gb|ACQ55121.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] Length = 141 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +R+ KLTQ E+ N+ AQS I +E K +I LA + L Sbjct: 1 MLGDKIKQLRENKKLTQHELANKLNIAQSTIGMIEGNKRPAGRKTLIKLADFFGVSVDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|257792707|ref|YP_003183313.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476604|gb|ACV56924.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 312 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F +N +++R +TQ E+ G ++ +++ E KS +D ++ L + L Sbjct: 1 MSFRDNLQHLRDTRNMTQSELAMLVGVSRQSVAKWEAEKSYPEMDKLLKLCDLFECTLDD 60 Query: 80 LLK 82 L++ Sbjct: 61 LVR 63 >gi|227542316|ref|ZP_03972365.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum ATCC 51866] gi|227181916|gb|EEI62888.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum ATCC 51866] Length = 123 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R + LT +++ + + ++SELE G+ ++ + + + L + Sbjct: 42 REALGTALRTFRADNHLTLRQLADLARVSPGYLSELERGRKEVSSELLASVCRALGVSVA 101 Query: 79 KLL 81 +L Sbjct: 102 DVL 104 >gi|227512467|ref|ZP_03942516.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC 11577] gi|227522692|ref|ZP_03952741.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii ATCC 8290] gi|227084292|gb|EEI19604.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC 11577] gi|227090140|gb|EEI25452.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii ATCC 8290] Length = 67 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R + KL+Q ++ ++G QS IS +E G + LA L+ +LL Sbjct: 4 NQLRFFRDKQKLSQTDLAVKSGVKQSTISSIERG-VDPTGRTLRKLAQALNVTTDELL 60 >gi|117621486|ref|YP_857504.1| DNA-binding transcriptional repressor PuuR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562893|gb|ABK39841.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 3/75 (4%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P + R+ L+Q+ + +G I +E K + ++ ++ Sbjct: 15 DNPMTDKGVA---QSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASL 71 Query: 67 IILAHTLDTPLWKLL 81 L + PL + Sbjct: 72 QKLLSVYELPLSRFF 86 >gi|37783322|gb|AAP44573.1| unknown protein [Lactobacillus sakei] Length = 165 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ KE L+Q E+ + G + IS +E G +++ A +L Sbjct: 1 MSHVTKEMGLSQTELAEKIGVQKQTISNIERGIRYPTFESLEKFATVFHATPIQLF 56 >gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316] gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316] Length = 112 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R EA LTQKE+ +Q I+ E G ++ LA+ + L Sbjct: 1 MLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|238794383|ref|ZP_04637994.1| DNA-binding phage-related protein [Yersinia intermedia ATCC 29909] gi|238726284|gb|EEQ17827.1| DNA-binding phage-related protein [Yersinia intermedia ATCC 29909] Length = 99 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + ++ RK LTQ+++ + G + IS +E GKS N+ + A L Sbjct: 34 RKALMTQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLATLSRYAAALG 89 >gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 168 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|317481430|ref|ZP_07940497.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|316902415|gb|EFV24302.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 92 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 E LTQ+ + + Q +IS++ GK ++++ + + + L + + L Sbjct: 39 ELGLTQQMLAEKMNCTQQYISKVLKGKKNMSLETICKIENALGIEIIRSL 88 >gi|313107823|ref|ZP_07793997.1| hypothetical protein PA39016_001140025 [Pseudomonas aeruginosa 39016] gi|310880499|gb|EFQ39093.1| hypothetical protein PA39016_001140025 [Pseudomonas aeruginosa 39016] Length = 62 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RK +++Q + +S++ +E G+ I ++ + +A L LL P Sbjct: 3 RKVCRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELACDPSSLLPP 56 >gi|309378536|emb|CBX22808.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 126 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +NI + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63 >gi|291525582|emb|CBK91169.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528252|emb|CBK93838.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 66 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGNSTPSAEFMLRISKYFNM 56 >gi|240851130|ref|YP_002972532.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268253|gb|ACS51841.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 117 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ R L+QK + + G + I + E G + ++ ++ +A LD P+ Sbjct: 12 LIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSAGCLLEIAQKLDVPI 68 >gi|229015775|ref|ZP_04172754.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] gi|228745532|gb|EEL95555.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] Length = 83 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 15 VRRKDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTT 74 Query: 77 LWKLL 81 + KL Sbjct: 75 VDKLF 79 >gi|237731603|ref|ZP_04562084.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907142|gb|EEH93060.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 178 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 28/62 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R + + + + TG +++ + ++E +S+ + + +A L+ P + Sbjct: 8 LATTLKTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFI 67 Query: 82 KP 83 P Sbjct: 68 SP 69 >gi|261400526|ref|ZP_05986651.1| DNA-binding protein [Neisseria lactamica ATCC 23970] gi|313669239|ref|YP_004049523.1| hypothetical protein NLA_19700 [Neisseria lactamica ST-640] gi|269209789|gb|EEZ76244.1| DNA-binding protein [Neisseria lactamica ATCC 23970] gi|313006701|emb|CBN88169.1| hypothetical protein NLA_19700 [Neisseria lactamica 020-06] Length = 134 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IR+ +Q+ + + + + +++E G+ + +D + +A L + LL Sbjct: 5 EKIRKIRELKNFSQENMAEQLQMSVNGYAKIERGEVGLQMDKLEKIADVLGMDVVDLLT 63 >gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445] gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 182 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|160915054|ref|ZP_02077267.1| hypothetical protein EUBDOL_01062 [Eubacterium dolichum DSM 3991] gi|158432853|gb|EDP11142.1| hypothetical protein EUBDOL_01062 [Eubacterium dolichum DSM 3991] Length = 424 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R + R R++ +T + G + ++SE+E G+ + + L + +D Sbjct: 11 SELKRKLTGALLRYYREDENMTINFVAESLGINKGYLSEIERGRKEPSSQMLEKLTNFMD 70 Query: 75 T 75 Sbjct: 71 I 71 >gi|121633999|ref|YP_974244.1| hypothetical protein NMC0113 [Neisseria meningitidis FAM18] gi|120865705|emb|CAM09432.1| hypothetical protein NMC0113 [Neisseria meningitidis FAM18] Length = 125 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ K +Q+++ + + +++E G++ +N+ + LA +W LLK Sbjct: 5 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNVPRLEQLAQIFKIDMWDLLK 63 >gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 277 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE TQ+E+ + G +S+ ET ++ +I + L+ LD + KLL Sbjct: 5 LAKNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKLL 64 >gi|15596103|ref|NP_249597.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100364|ref|ZP_01364282.1| hypothetical protein PaerPA_01001389 [Pseudomonas aeruginosa PACS2] gi|116048830|ref|YP_792370.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893125|ref|YP_002441994.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254239258|ref|ZP_04932581.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719] gi|296390740|ref|ZP_06880215.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313105790|ref|ZP_07792053.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9946808|gb|AAG04295.1|AE004525_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584051|gb|ABJ10066.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126171189|gb|EAZ56700.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719] gi|218773353|emb|CAW29165.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310878555|gb|EFQ37149.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 237 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 + RK A L+Q ++ G Q+ IS+LE GKS + +A PLW Sbjct: 6 RIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRAT-SFVAQIAGACGVNPLW 59 >gi|332310433|gb|EGJ23528.1| Putative repressor protein [Listeria monocytogenes str. Scott A] Length = 84 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IR +TQ E G + S +S++E G + I +A+ + ++ Sbjct: 9 NNLKKIRIAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYGKSVGEIF 66 >gi|304439396|ref|ZP_07399308.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372178|gb|EFM25772.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 71 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ N + IR E KLTQK + + G +++ IS +ETG+ +IL LD Sbjct: 3 DKLELKNRLKEIRSEKKLTQKNLADMVGVSRNTISSIETGEFCPTSRLALILCIALDKKF 62 Query: 78 WKLL 81 + Sbjct: 63 EDIF 66 >gi|293597074|ref|ZP_05267060.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293585265|gb|EFF97297.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] Length = 75 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IR +TQ E G + S +S++E G + I +A+ + ++ Sbjct: 17 NNLKKIRIAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYGKSVGEIF 74 >gi|293382140|ref|ZP_06628083.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388549|ref|ZP_06633052.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|304440304|ref|ZP_07400193.1| cro/CI family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|312905764|ref|ZP_07764786.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312909040|ref|ZP_07767900.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291080423|gb|EFE17787.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291082071|gb|EFE19034.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|291166678|gb|EFE28724.1| transcriptional regulator [Filifactor alocis ATCC 35896] gi|304371056|gb|EFM24673.1| cro/CI family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|310628243|gb|EFQ11526.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311290602|gb|EFQ69158.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 391 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R L+Q + TG + ++S++ETGK + L LW+ L+ Sbjct: 3 QHLKEKRLAYGLSQNRLAIATGITRQYLSDIETGKVKPS--------DELQQSLWETLE 53 >gi|290957415|ref|YP_003488597.1| regulatory protein [Streptomyces scabiei 87.22] gi|260646941|emb|CBG70040.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 276 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R +R EA LT + R G Q +S++ETG+ + D + L LD Sbjct: 4 LGARLRVLRAEAGLTGAVLAQRAGVGQPTVSKVETGRMVPSADVLDRLTRALD 56 >gi|257898371|ref|ZP_05678024.1| predicted protein [Enterococcus faecium Com15] gi|257836283|gb|EEV61357.1| predicted protein [Enterococcus faecium Com15] Length = 130 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77 F + +R L ++ ++G + S IS E G+ ++ + L+ L + Sbjct: 3 FGEKLKKLRTSRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSI 59 >gi|224823540|ref|ZP_03696649.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603995|gb|EEG10169.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 205 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ KL+ E+ R G ++ + E+E + +I + +A L + ++ Sbjct: 22 VAAKLKQHRKKQKLSLDELSRRAGVSKGMLVEIEKCIANPSIAILCKIAAALGVSVADIV 81 >gi|197302037|ref|ZP_03167098.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] gi|197298846|gb|EDY33385.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] Length = 336 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI RK+ +Q+E+ + ++ +S+ E+ S ++ ++ +A + Sbjct: 3 MILSEKIAEERKKNGWSQEELAEKLSVSRQAVSKWESASSVPDLQKLLRMAKIFEVSTDY 62 Query: 80 LLK 82 LLK Sbjct: 63 LLK 65 >gi|197284430|ref|YP_002150302.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681917|emb|CAR41287.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 101 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I RKE +T +EI + +Q S +E G + I ++++ +A L +L Sbjct: 7 IIAYRIMQKRKELGMTGREIAHSLEISQQHYSRIENGHTKITVEHLFSIAFILGVKPKEL 66 Query: 81 L 81 L Sbjct: 67 L 67 >gi|153931878|ref|YP_001384723.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935604|ref|YP_001388244.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|170757150|ref|YP_001782087.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|152927922|gb|ABS33422.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931518|gb|ABS37017.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169122362|gb|ACA46198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 82 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + + +R++ LTQ +I + +S ++ E G +I ++ +A + L Sbjct: 1 MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|187925298|ref|YP_001896940.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187716492|gb|ACD17716.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 229 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 34/75 (45%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P ++ + N +R E +L+ + +G +++ ++++E+ +S +I + Sbjct: 18 SPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLC 77 Query: 68 ILAHTLDTPLWKLLK 82 +A L + L+ Sbjct: 78 KVAAALKVSVAAFLR 92 >gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC 12472] gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 115 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK + Q+++ + G IS LE G+ + ++ LA L + LL Sbjct: 14 GQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVLGCSVNDLL 72 >gi|83592461|ref|YP_426213.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575375|gb|ABC21926.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 104 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R+ ++Q+E+ TG QS IS++E + + ++I LAH + L Sbjct: 9 AKALKEAREAKAMSQRELSANTGVPQSHISKIERNGVDLRLSSLIALAHGVGLDLV 64 >gi|16798820|ref|NP_463498.1| putative repressor protein [Listeria phage A118] gi|254825099|ref|ZP_05230100.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254901047|ref|ZP_05260971.1| XRE family transcriptional regulator [Listeria monocytogenes J0161] gi|254914003|ref|ZP_05264015.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|5823635|emb|CAB53823.1| putative repressor protein [Listeria phage A118] gi|293592020|gb|EFG00355.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594342|gb|EFG02103.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] Length = 80 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + IR +TQ E G + S +S++E G + I +A+ + ++ Sbjct: 5 NNLKKIRIAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYGKSVGEIF 62 >gi|83858372|ref|ZP_00951894.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853195|gb|EAP91047.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633] Length = 76 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + R + L+++E+ R I +E G+ I+ + L+ TL L L Sbjct: 7 FQNRVKTYRVDCGLSRQELATRVQVHPQTIGAIERGQFNPTIEVALRLSETLGVGLDALF 66 >gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 101 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+E +Q ++ + Q IS E+G +I + LA + + LL+ Sbjct: 3 RIKELRQEKDFSQIQLAKQFDITQQTISNYESGVREPSITTLKNLADFFNVSIDYLLE 60 >gi|332981127|ref|YP_004462568.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698805|gb|AEE95746.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 74 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + ++IR + T +++ +G + ++ ++E +S +++ + +A+ L+ Sbjct: 1 MIGKKLKSIRNKRGYTLRQLEKLSGVSHGFLCDIEHDRSDPSLETLHKIANALEIEPAYF 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 109 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +R LTQKE+ ++G + I E G + + + + ++ T D + Sbjct: 1 MISGKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISA 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|320094251|ref|ZP_08026052.1| cro/CI family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978817|gb|EFW10359.1| cro/CI family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 71 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 NN + +R E + TQ E G ++ + +E GK ++ +A + + P Sbjct: 3 NNVKELRSEQRWTQAEFGASLGVSRQTVIAIENGKYDPSLGLAFKIASVFGKCIEDIFYP 62 >gi|312901705|ref|ZP_07760974.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311291174|gb|EFQ69730.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315148196|gb|EFT92212.1| helix-turn-helix protein [Enterococcus faecalis TX4244] Length = 427 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 3 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54 >gi|301310342|ref|ZP_07216281.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|300831916|gb|EFK62547.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 83 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + E +T + + G ++ +S + TGKS+ ++DN+I +A L+ + +L+ Sbjct: 4 RIKEFMNERNITSAWLAKQVGISKVAVSNIVTGKSSPSLDNIIKIASVLNVSITELI 60 >gi|296533827|ref|ZP_06896363.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265845|gb|EFH11934.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 192 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E L+ +E+ RTG +++ +S LE +++ + L L ++ Sbjct: 18 LARLRAEQGLSLEELAGRTGISRATLSRLERAEASPTAAMLGRLCTAYGRTLSWMM 73 >gi|293380466|ref|ZP_06626533.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus 214-1] gi|290922973|gb|EFD99908.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus 214-1] Length = 120 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + +IR ++Q E+ + ++ ++++E G I+ D + +A L Sbjct: 3 DQELLARKIVSIRNSQDMSQLELAQKANIERTALNKIEKGTRKISSDELKRIALALHQSS 62 Query: 78 WKLL 81 LL Sbjct: 63 DDLL 66 >gi|255692636|ref|ZP_05416311.1| DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260621612|gb|EEX44483.1| DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 191 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ +T +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKALREDKTITIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|145636517|ref|ZP_01792185.1| hypothetical protein CGSHiHH_08567 [Haemophilus influenzae PittHH] gi|145270342|gb|EDK10277.1| hypothetical protein CGSHiHH_08567 [Haemophilus influenzae PittHH] Length = 95 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 25/52 (48%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R + +T+ ++ N + S+++ LE GK N+ + + L P L+ Sbjct: 11 RTQKGITKTQLANDANISISYLTLLEQGKREPNLTTINSICKALQIPPSILI 62 >gi|110800265|ref|YP_696047.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110674912|gb|ABG83899.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 114 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N + +RKE LTQ ++ N + S I E + T + + + L++ + + L Sbjct: 1 MFGNRLKTLRKEKDLTQAQLANILKTSASAIGMYEQNRRTPDTETLQTLSNYFNVSVDYL 60 Query: 81 L 81 + Sbjct: 61 I 61 >gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium] Length = 63 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK+ +TQ+++ G + I+ +E K ++ L+ L + +L Sbjct: 3 NKIKAIRKKLGITQEQLAKECGVVRQTINCIENDKYDPTLELAFKLSKMLKVKVDELF 60 >gi|323492256|ref|ZP_08097414.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis LMG 20546] gi|323313569|gb|EGA66675.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis LMG 20546] Length = 185 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ + L+ E+ R A+S +S+LE G +I+ + + LD P +L++ Sbjct: 12 AATLSRERQRSGLSLSEVAKRAQIAKSTLSQLENGAGNPSIETLWSICVVLDIPFSRLIE 71 >gi|293605930|ref|ZP_06688300.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292815717|gb|EFF74828.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 106 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + RK LTQ + R G +QS +S LE ++++ +I L L Sbjct: 33 LGSVLQAARKAQGLTQSALAIRIGLSQSRVSHLELHPHELSVEQLITWCSALGLELV 89 >gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 167 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|260430989|ref|ZP_05784960.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260414817|gb|EEX08076.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 466 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R LTQKE + G + +++++E I+ ++ LA Sbjct: 3 TQKLYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPISTTVVLALAQEFGMD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|227484822|ref|ZP_03915138.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237182|gb|EEI87197.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK +TQ+E+ ++ + LE G+ +I +A + + + Sbjct: 3 NRLEEIRKHKGITQEELAKILEVSRQTVGSLENGRYNPSIILAFKIARYFEMAIEDIF 60 >gi|189349776|ref|YP_001945404.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189333798|dbj|BAG42868.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 97 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R +RK L+Q+ + + +++++S LE + + + L +D Sbjct: 1 MTAKHSLATAIRTVRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTMHKLTELCEVMDV 58 Query: 76 PLWKLLK 82 LL Sbjct: 59 HPLTLLT 65 >gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] Length = 194 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +LTQ ++ + IS+ E G +I L+ D L KLL Sbjct: 7 GKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDLEKLL 65 >gi|104781495|ref|YP_607993.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95110482|emb|CAK15190.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 180 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 33/57 (57%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ +T + + ++G +S++S++E G +T +I + LA L+ + +L Sbjct: 4 RLKLLRKKLGITLEVLAEKSGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60 >gi|84498439|ref|ZP_00997209.1| putative DNA-binding protein [Janibacter sp. HTCC2649] gi|84381182|gb|EAP97066.1| putative DNA-binding protein [Janibacter sp. HTCC2649] Length = 122 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R +L+ +++ + G + ++S+LE G + + + LA L+ L Sbjct: 12 LGDYLREQRLSHRLSLRQLSDLAGISNPYLSQLERGLKRPSAEILQQLAKGLEVSAETL 70 >gi|83952965|ref|ZP_00961693.1| hypothetical protein ISM_17405 [Roseovarius nubinhibens ISM] gi|83835656|gb|EAP74957.1| hypothetical protein ISM_17405 [Roseovarius nubinhibens ISM] Length = 85 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +A L Q E+ + QS I+ LE+G+ +++ +++LA + +++L Sbjct: 15 QALVDARIKAGLGQAELATKLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPYEVL 72 >gi|256960273|ref|ZP_05564444.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256950769|gb|EEU67401.1| conserved hypothetical protein [Enterococcus faecalis Merz96] Length = 396 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + R L+Q + TG + ++S++ETGK + L LW+ L+ Sbjct: 8 QHLKEKRLAYGLSQNRLAIATGITRQYLSDIETGKVKPS--------DELQQSLWETLE 58 >gi|302557278|ref|ZP_07309620.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302474896|gb|EFL37989.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 273 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ +++Q E+ R G + IS +ETG+S + + ++ LA LD P+ + Sbjct: 20 LRAWREQRRVSQLELALRAGSSARHISFVETGRSRPSEEMVLRLAEHLDVPVRE 73 >gi|261402920|ref|YP_003247144.1| transcriptional regulator, XRE family [Methanocaldococcus vulcanius M7] gi|261369913|gb|ACX72662.1| transcriptional regulator, XRE family [Methanocaldococcus vulcanius M7] Length = 314 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW- 78 I N + +R+ ++ ++ G ++ I + ET + ++D I + LD PL Sbjct: 122 KIDGNVLKEVRESMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVAIKIEEFLDVPLVR 181 Query: 79 --KLLKP 83 L +P Sbjct: 182 GIDLFEP 188 >gi|296129386|ref|YP_003636636.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296021201|gb|ADG74437.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 120 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R+ T +E+ + + ++SE+E G+ + + + + LD P+ Sbjct: 5 RREIGDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLSSICDALDVPMS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 LVLR 68 >gi|225019710|ref|ZP_03708902.1| hypothetical protein CLOSTMETH_03663 [Clostridium methylpentosum DSM 5476] gi|224947555|gb|EEG28764.1| hypothetical protein CLOSTMETH_03663 [Clostridium methylpentosum DSM 5476] Length = 77 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLD 74 ER I + RK TQ+ + S+IS++E T ++++ + +A L+ Sbjct: 7 ERYIKLGLKIQYYRKLRGFTQETFAEAIDKSWSFISKIESPTTIRGVSLETLFKMADVLE 66 Query: 75 TPLWKLLK 82 +KL+K Sbjct: 67 IEPYKLIK 74 >gi|154484851|ref|ZP_02027299.1| hypothetical protein EUBVEN_02569 [Eubacterium ventriosum ATCC 27560] gi|210610460|ref|ZP_03288417.1| hypothetical protein CLONEX_00607 [Clostridium nexile DSM 1787] gi|149733804|gb|EDM49923.1| hypothetical protein EUBVEN_02569 [Eubacterium ventriosum ATCC 27560] gi|210152453|gb|EEA83459.1| hypothetical protein CLONEX_00607 [Clostridium nexile DSM 1787] Length = 66 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNM 56 >gi|116873523|ref|YP_850304.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742401|emb|CAK21525.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 426 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RN+RK+ +T K++ + + +++ +E G T +I+ ++ LA L+ P L Sbjct: 3 LIGLRIRNLRKQKGMTLKDVSHGI-VSIPYLANIENGVKTASIETLMHLARRLEVPEETL 61 Query: 81 L 81 L Sbjct: 62 L 62 >gi|50121363|ref|YP_050530.1| regulator of pectin lyase production [Pectobacterium atrosepticum SCRI1043] gi|49611889|emb|CAG75338.1| regulator of pectin lyase production [Pectobacterium atrosepticum SCRI1043] Length = 244 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 + + R L+QK + + G +Q+ I ++E GK++ ++ L++ L P Sbjct: 2 KTTLAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKASQTT-KIVELSNALHIRPE 60 Query: 78 W 78 W Sbjct: 61 W 61 >gi|319744195|gb|EFV96562.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 129 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK+A LTQKEI + G +Q + E G +N LA + L L+ Sbjct: 15 FSERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGVKMPTHENSKKLARLFNITLDTLM 74 >gi|315036199|gb|EFT48131.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 438 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 14 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 65 >gi|313829196|gb|EFS66910.1| cupin domain protein [Propionibacterium acnes HL063PA2] Length = 194 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + T ++ + G ++ + +E G + ++ L+ L L L++ Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72 Query: 83 P 83 P Sbjct: 73 P 73 >gi|289191957|ref|YP_003457898.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938407|gb|ADC69162.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+++ + G ++ I +E GK ++ +A + + Sbjct: 3 NKLKIYRAMYNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 >gi|229100015|ref|ZP_04230935.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] gi|228683443|gb|EEL37401.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R E TQ+E+ R G ++ I+ LE K ++ +A+ + P+ + Sbjct: 1 MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANEFEKPITDV 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|256376030|ref|YP_003099690.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920333|gb|ACU35844.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 512 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 30/58 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R++ +Q ++ +QS I+ +E G ++++ + ++ LD+ + + +P Sbjct: 17 IRASRRQRGWSQAQLATAVSTSQSAINRIEQGGQNLSLEMLSRISEALDSGIVSIGQP 74 >gi|254388231|ref|ZP_05003467.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294817295|ref|ZP_06775937.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701954|gb|EDY47766.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294322110|gb|EFG04245.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 389 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 + +RK L+Q+++ +G + S I +LE G T ++ + LA LD P L+ Sbjct: 6 GRKLKEVRKRRGLSQRDLAKASGVSLSLIRKLEQGDYGTPMLETLRKLASVLDIPTMCLV 65 >gi|167589784|ref|ZP_02382172.1| helix-turn-helix domain protein [Burkholderia ubonensis Bu] Length = 304 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A+L +++ R +++ + +LE G+ + ID + LA L L+ Sbjct: 22 GERLRAYRMAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLM 79 >gi|154498771|ref|ZP_02037149.1| hypothetical protein BACCAP_02762 [Bacteroides capillosus ATCC 29799] gi|150272161|gb|EDM99365.1| hypothetical protein BACCAP_02762 [Bacteroides capillosus ATCC 29799] Length = 80 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWKLL 81 N + RKE +T ++ + ++ ++E+ + +++ ++ L + KL Sbjct: 19 RNIKKYRKEKGMTSAQLAELVDLSHDFVRQIESERVGHNFSVETFYKISVALGVSMDKLA 78 Query: 82 K 82 + Sbjct: 79 R 79 >gi|154500969|ref|ZP_02039007.1| hypothetical protein BACCAP_04655 [Bacteroides capillosus ATCC 29799] gi|150269993|gb|EDM97512.1| hypothetical protein BACCAP_04655 [Bacteroides capillosus ATCC 29799] Length = 79 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + IF R +RK+ QK + + + ISE+E G ++ + ++ + Sbjct: 1 MTTKEIFSQRMRELRKQTGQPQKVLAELLDVSVNQISEMEKGTRMTTLEKLAVICQHYNV 60 Query: 76 PLWKLL 81 LL Sbjct: 61 SADYLL 66 >gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] Length = 108 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R +R++ +Q E+ R + S++ETG + INI + +AH + Sbjct: 3 VIGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLEQIAHLFQVSTMDI 62 Query: 81 L 81 + Sbjct: 63 I 63 >gi|157370471|ref|YP_001478460.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322235|gb|ABV41332.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 187 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R + + + TG +++ + ++E G+S+ + + +A + L Sbjct: 8 LAQTLRSLRSQRGWSLAQAAENTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSAFL 67 Query: 82 K 82 + Sbjct: 68 E 68 >gi|86355802|ref|YP_467694.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86279904|gb|ABC88967.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 121 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R +R +++Q ++ G I + E G + ++ + +A L + L Sbjct: 8 IVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLGVEISAL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 126 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + + +R + + Q E+ QS IS+ E +ST N + + +A + Sbjct: 1 MAFSDKLKQLRTKKGIKQSELAEILHLRQSSISDYENNRSTPNPETIKKIAEYFNVSANY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|332800290|ref|YP_004461789.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332698025|gb|AEE92482.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + +RK+ L+Q E+ RT F QS IS++E + + + I+A L + + Sbjct: 1 MFGQKIKQLRKQNNLSQSELARRTRIFNQSQISKIENNTRFLKANELKIIADALGVKVEE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ +Q+E G ++ +S+ E +ST ++ +I ++ Sbjct: 1 MILADKIIELRKKNGWSQEEFAEMLGVSRQSVSKWEGAQSTPELNRLIQMSKIFSVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|300856321|ref|YP_003781305.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436436|gb|ADK16203.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ N + R E ++Q+++ G ++ IS +ETG+ +ILA L Sbjct: 3 DKTNLNNRLKVARAELNISQQQLATMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKF 62 Query: 78 WKLL 81 L Sbjct: 63 EDLF 66 >gi|294630753|ref|ZP_06709313.1| transcriptional regulator [Streptomyces sp. e14] gi|292834086|gb|EFF92435.1| transcriptional regulator [Streptomyces sp. e14] Length = 442 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 RR+R +++A R I R R + +QK++ G+ QS +S LE G+ T + Sbjct: 12 RRRRGPWQMAEAHSEARRI-GEVIRQARVLQRRSQKDVAAALGYHQSKVSRLEGGQGTED 70 Query: 63 IDNMIILAHTLDTPLWKL 80 I + +A L P +L Sbjct: 71 IRVLRAVAQELKIPPQQL 88 >gi|291541574|emb|CBL14684.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 69 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F RK+ L+Q E+ ++GF + I E GK +I+++N L L + Sbjct: 6 FAEILLKSRKQKSLSQSELAKKSGFTKRAIQYWEKGKKSISLENADRLLTALGVEI 61 >gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103] gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103] Length = 181 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +R+ + +TG +++ + ++E G+S+ + + +A + P Sbjct: 8 LGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62 >gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 374 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65 >gi|227513203|ref|ZP_03943252.1| repressor protein [Lactobacillus buchneri ATCC 11577] gi|227083584|gb|EEI18896.1| repressor protein [Lactobacillus buchneri ATCC 11577] Length = 80 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R + LT ++I ++ G ++S+ S +E G+ + + +A L T Sbjct: 5 LRETRLKKGLTMQQIADKVGISKSYYSLIERGERRASYELTFKIAKILKTKP 56 >gi|256375244|ref|YP_003098904.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919547|gb|ACU35058.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 403 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI-DNMIILAHTLDTPLWKLL 81 N RK L+Q+E+ + +E G+ + ++ LA L LL Sbjct: 7 ENLARFRKARNLSQEELAVAASVGVDTVGRIERGERSTTRPSTIVKLARALGVSADSLL 65 >gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 470 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 23/57 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R E L+Q + + S+++++E + + ++ ++ Sbjct: 3 KTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGV 59 >gi|188587728|ref|YP_001920281.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188498009|gb|ACD51145.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 121 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 N +N R E KLT K++ + +G S IS++ETGK+ + + LA +LD + Sbjct: 5 GNFLKNKRIEKKLTLKDLSDLSGVGPSTISDIETGKALNPRMITLQKLASSLDISVNDFF 64 Query: 82 K 82 + Sbjct: 65 E 65 >gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] Length = 206 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 + + +RKE LTQ+++ N G +S I++ E + + + + L+ + P Sbjct: 1 MTGQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVP 57 >gi|209551999|ref|YP_002283915.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539592|gb|ACI59523.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 466 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ R +R K Q + R G + S+++++E+ + ++ ++ L + Sbjct: 5 KLFIGKKVRELRLLHKANQSQFAERLGISTSYLNQIESNQRPVSAAVLLALVDKFQLDMS 64 Query: 79 KL 80 L Sbjct: 65 DL 66 >gi|126733832|ref|ZP_01749579.1| DNA-binding protein [Roseobacter sp. CCS2] gi|126716698|gb|EBA13562.1| DNA-binding protein [Roseobacter sp. CCS2] Length = 196 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IRK K+T ++ + G + W+S++E KS I ++ +A LD + L Sbjct: 19 LGADVRAIRKARKMTLIDLSDAMGRSVGWLSQVERDKSYPTIADLNKMAALLDVSVSSFL 78 Query: 82 K 82 + Sbjct: 79 Q 79 >gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1] gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1] Length = 470 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 7/57 (12%), Positives = 23/57 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R E L+Q + + S+++++E + + ++ ++ Sbjct: 3 KTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGV 59 >gi|19352384|ref|NP_598142.1| TrbA protein [uncultured bacterium] gi|58616620|ref|YP_195829.1| conjugal transfer protein TrbA [Achromobacter xylosoxidans A8] gi|19070051|emb|CAD24367.1| TrbA protein [uncultured bacterium] gi|58416218|emb|CAI47813.1| transcriptional regulator [Achromobacter xylosoxidans] Length = 119 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 IF N + E +T+KE+ +R+G + S++S+L TGK+ ++ M +A Sbjct: 5 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMQDIAK 55 >gi|163940990|ref|YP_001645874.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863187|gb|ABY44246.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ + G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRAKVHMTQEDLAKKVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4] gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 196 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +RE + R +R+E +LT +E+ TG ++ +S++E + T I ++ +A Sbjct: 5 KPEIRELKL-GEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVTPPIATLLKIAKG 63 Query: 73 LDT 75 L Sbjct: 64 LKV 66 >gi|332637058|ref|ZP_08415921.1| hypothetical protein WcibK1_00055 [Weissella cibaria KACC 11862] Length = 127 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I N + + K+ ++T + G + + IS+ GK+ ID + +A Sbjct: 7 KAIMGRNIKRLIKQREITAARLAEIVGVSTATISDWSNGKTYPRIDKIEAMADYFGVSKS 66 Query: 79 KLLK 82 L++ Sbjct: 67 DLVE 70 >gi|330831530|ref|YP_004394482.1| putative transcriptional regulator [Aeromonas veronii B565] gi|328806666|gb|AEB51865.1| Putative transcriptional regulator [Aeromonas veronii B565] Length = 180 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R +A L+Q+E+ R+G +IS++E + + ++ ++ + + L Sbjct: 4 GHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVASLRKVLEGIPMSLASFFT 63 >gi|325262169|ref|ZP_08128907.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033623|gb|EGB94900.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 70 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +N R +R++ +TQ+++ N+ + +S E GK +I +I +A D L +L Sbjct: 7 GHNIRLLRRKHHMTQEQVANKLYMKRQTLSNYEIGKRIPDIYEIIKIADLFDISLDEL 64 >gi|315576305|gb|EFU88496.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582797|gb|EFU94988.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 427 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 3 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54 >gi|317132885|ref|YP_004092199.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470864|gb|ADU27468.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 113 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +TQ + ++ + I +ETGK + + + L P + +P Sbjct: 15 ARISRGMTQTALADKIEVSLRTIIAIETGKRNPTFEVLYKIIQELSIPADLIFRP 69 >gi|307710856|ref|ZP_07647283.1| hypothetical protein SMSK321_1212 [Streptococcus mitis SK321] gi|307617301|gb|EFN96474.1| hypothetical protein SMSK321_1212 [Streptococcus mitis SK321] Length = 303 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P + Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 133 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK+ + TQK++ R S IS+ E G + + LA L T LL Sbjct: 21 FGQKVAQLRKKKRFTQKQLAERIDVTPSTISKYEHGTHRPPVFILAKLAEELGTTTDFLL 80 Query: 82 K 82 + Sbjct: 81 E 81 >gi|326442721|ref|ZP_08217455.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 273 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R+ +T +E+ R +QS IS LE G+ +I+ ++ L + Sbjct: 2 GLELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 54 >gi|182434926|ref|YP_001822645.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775443|ref|ZP_08234708.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178463442|dbj|BAG17962.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655776|gb|EGE40622.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 273 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R++ +++Q E+ R + IS +ETG+S + D ++ LA L+ P+ + Sbjct: 14 LRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEELNVPVRE 67 >gi|70729814|ref|YP_259553.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344113|gb|AAY91719.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 283 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 25/41 (60%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R +R++A+L+Q ++ + G +Q +S +ETG++ + Sbjct: 25 VGAQLRQLRRQARLSQLDLALQAGISQRHLSCVETGRAQPS 65 >gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 168 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|320324237|gb|EFW80316.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. glycinea str. B076] Length = 135 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + +R LTQK + + + +++++S+LE +S++ +D + L+ TL+ Sbjct: 4 KTAFAAVLKAMRNSRGLTQKHLSDAS--SRTYLSKLERAQSSLTLDKLQALSQTLELSPL 61 Query: 79 KLL 81 L+ Sbjct: 62 TLV 64 >gi|319441554|ref|ZP_07990710.1| putative transcription regulator [Corynebacterium variabile DSM 44702] Length = 136 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R++A+ T +++ + ++SELE G+ ++ + + + H L + Sbjct: 42 REALGTTLRAFREDARRTLRDLAVAASVSPGYLSELERGRKEVSSELLASICHALGVNVS 101 Query: 79 KLL 81 +++ Sbjct: 102 RVI 104 >gi|262283491|ref|ZP_06061257.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] gi|262260982|gb|EEY79682.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] Length = 288 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + + RKE KL+QKE+ + G Q IS LE G+ T D + LA L + Sbjct: 4 LLASRLKQRRKELKLSQKELAD--GICKQGQISRLENGEYTPGSDLLHELAKRLKVSM 59 >gi|251788539|ref|YP_003003260.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537160|gb|ACT05781.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 82 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ E + + R R +TQ+ + QS+I+++E G+ +++ + LA Sbjct: 1 MASTYTTEYQLVIKTLREARIAKGITQEMLAQALERPQSFIAKVENGERRLDVVEFVQLA 60 Query: 71 HTLDTPLWKLL 81 L ++L Sbjct: 61 RLLALDPAQVL 71 >gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] Length = 367 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+E +TQ+++ G ++S +S+ ETG + +I + LA + + L+ Sbjct: 7 GKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNAYPDICLLPELATLFNISVDTLM 65 >gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 370 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + +A + + Sbjct: 2 EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 370 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + +A + + Sbjct: 2 EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|156741559|ref|YP_001431688.1| XRE family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232887|gb|ABU57670.1| transcriptional regulator, XRE family [Roseiflexus castenholzii DSM 13941] Length = 119 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ER + R+ +LTQ E+ R G + S+IS +E G+S+ I ++ LA Sbjct: 2 PSFNER--VGEVIKRKRQRDRLTQAELGGRIGVSGSYISSIENGQSSARIADIEALAVVF 59 Query: 74 DTPLWKLL 81 T + LL Sbjct: 60 RTTAFDLL 67 >gi|325688604|gb|EGD30621.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] gi|328945288|gb|EGG39441.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 116 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ ++Q+E+ R +I++LE + I ++ + L+ + Sbjct: 12 AQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVIAALELTPEEFF 70 >gi|325264845|ref|ZP_08131573.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029834|gb|EGB91121.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 693 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + F +R + LTQ ++ G ++S + E GK T ++ +I +A L Sbjct: 2 AKTEFHERLTALRTGSSLTQTQMAELLGISRSTYANYEVGKRTPDLKMLIKIADVFTCSL 61 Query: 78 WKLL 81 +L+ Sbjct: 62 DELV 65 >gi|297172231|gb|ADI23210.1| hypothetical protein [uncultured Gemmatimonadales bacterium HF0770_11C06] Length = 185 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 F + R R+ ++ + + G + +++S++E G + + LA L +L Sbjct: 6 FGSGIRQRRRTRNVSLRRLAQDAGLSGAYLSQIERGLVPPPSSAKIKALAVALGESPDEL 65 Query: 81 L 81 + Sbjct: 66 I 66 >gi|302541529|ref|ZP_07293871.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302459147|gb|EFL22240.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 286 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +PR +L R R +++Q E+ R + IS +ETG+S Sbjct: 7 LPRAPSRFRYLRGMTTVAPPGVGALLRAWRDRRRISQLELALRADSSARHISFIETGRSR 66 Query: 61 INIDNMIILAHTLDTPLWK 79 + + ++ LA LD P+ + Sbjct: 67 PSQEMVLRLADHLDVPVRE 85 >gi|257867307|ref|ZP_05646960.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873640|ref|ZP_05653293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257801363|gb|EEV30293.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807804|gb|EEV36626.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 91 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ A LTQ+E+ QS I+ +E G + + + LA L L Sbjct: 36 LMKARESAGLTQRELAELAAVPQSTIARIERGD-NTSFETLSKLASALGKTL 86 >gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 86 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR E LTQ E+ R Q+ IS+LE+G+ + + + LD L + Sbjct: 11 VGDAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLMALDMDLHIMP 70 Query: 82 KP 83 KP Sbjct: 71 KP 72 >gi|253690481|ref|YP_003019671.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757059|gb|ACT15135.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 105 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68 + + R IF ++ R L+QK + G A + I+ E G N+ Sbjct: 2 NTRQQHRDIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTASR 61 Query: 69 LAHTLDTPL 77 LA LD PL Sbjct: 62 LAEALDVPL 70 >gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 138 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R A ++Q+E+ ++ ++ +S+ ETG S +I + L+ D + ++ Sbjct: 6 ERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDYIV 63 >gi|225374593|ref|ZP_03751814.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] gi|225213545|gb|EEG95899.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] Length = 179 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 22/55 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R ++Q+ + +G + I + E G D ++ +A+ L + Sbjct: 4 GEKIKYFRNMRGISQETLGQLSGINSATIKKYEYGIRNPKPDQLLKIANALGISI 58 >gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 223 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEARQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|325969996|ref|YP_004246187.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025234|gb|ADY11993.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 175 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F+ +RKE KLTQ+++ R + +S ETG + ++D ++ +A + Sbjct: 10 FKELRKEKKLTQEQVSVRLNVSNRTVSRWETGSTMPDLDVLMQMADFYEV 59 >gi|313668496|ref|YP_004048780.1| DNA-binding protein [Neisseria lactamica ST-640] gi|313005958|emb|CBN87415.1| putative DNA-binding protein [Neisseria lactamica 020-06] Length = 110 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 RK + LTQ ++ R + +S LE G + ++ ++ LA Sbjct: 7 QTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIFGCETAD 66 Query: 80 LL 81 LL Sbjct: 67 LL 68 >gi|258593006|emb|CBE69317.1| putative transcriptional regulator [NC10 bacterium 'Dutch sediment'] Length = 104 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ K++Q+E+ + Q +S +E G + I+ + +A L L Sbjct: 39 VALEITRAREARKMSQRELADALKTKQQTVSRIERGAQNVTIETLDKIARALGRGLQVRF 98 Query: 82 KP 83 P Sbjct: 99 VP 100 >gi|312200129|ref|YP_004020190.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 273 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+ R+ A ++ +++ + G + ++S++E G + + + +A L L Sbjct: 9 LGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL 67 >gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 126 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +++RK +TQK+I + G + S I E + +++ + +A + + L Sbjct: 1 MIGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQNRREPDLETVQKIADFFNVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|228938896|ref|ZP_04101496.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971777|ref|ZP_04132398.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978386|ref|ZP_04138763.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228781403|gb|EEM29604.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228787867|gb|EEM35825.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820745|gb|EEM66770.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939396|gb|AEA15292.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 404 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLE 55 >gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 109 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R +R++ +Q E+ R + S++ETG + INI + +A+ + + Sbjct: 3 IIGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLAQIANLFEVSTMDI 62 Query: 81 L 81 + Sbjct: 63 I 63 >gi|227873927|ref|ZP_03992147.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840233|gb|EEJ50643.1| transcriptional regulator [Oribacterium sinus F0268] Length = 191 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R E LTQ + R ++ IS E KS +I+++I+L+ L+ + L+K Sbjct: 4 GKKIKYYRNEKSLTQDNLAERIFVSRQTISNWENDKSYPDINSIILLSEVLEVSVDNLIK 63 >gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1] gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1] Length = 138 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R A ++Q+E+ ++ ++ +S+ ETG S +I + L+ D + ++ Sbjct: 6 ERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDYIV 63 >gi|261403945|ref|YP_003240186.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280408|gb|ACX62379.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 68 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E R RK LTQ+E+ R+G + + + +E G + +A L+ L Sbjct: 2 ENKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGNRRAEEQMLAQIADVLEITL 61 Query: 78 WKL 80 +L Sbjct: 62 QEL 64 >gi|154498814|ref|ZP_02037192.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] gi|150272204|gb|EDM99408.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] Length = 198 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M R R+ +TQKE+ ++ +S++E + ++ + LA L P Sbjct: 1 MTLGQKIREARQSKGMTQKELVGDY-ITRNMLSKIENDSAIPSVRTLEYLAGALGFP 56 >gi|114567062|ref|YP_754216.1| hypothetical protein Swol_1542 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337997|gb|ABI68845.1| hypothetical protein Swol_1542 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 102 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 27/45 (60%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + L+QK++ ++ G Q+ ++++E+G I+ + +A+ L Sbjct: 46 RLKHGLSQKKLADKLGVTQAMVAKMESGDYNYTIEQLWKIANKLG 90 >gi|119387177|ref|YP_918232.1| hypothetical protein Pden_4472 [Paracoccus denitrificans PD1222] gi|119377772|gb|ABL72536.1| protein of unknown function DUF955 [Paracoccus denitrificans PD1222] Length = 464 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R R A LTQ+ +R G + ++S++E ++ ++ LA Sbjct: 3 TQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFSVD 62 Query: 77 L 77 L Sbjct: 63 L 63 >gi|116494490|ref|YP_806224.1| transcriptional regulator [Lactobacillus casei ATCC 334] gi|116104640|gb|ABJ69782.1| Predicted transcriptional regulator [Lactobacillus casei ATCC 334] Length = 62 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN +R KLTQ+E+ + + I+ +E K + LA L+T + +L + Sbjct: 3 NNIHALRMRQKLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAECLETTVDQLFQ 61 >gi|15672309|ref|NP_266483.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511183|ref|YP_808399.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281490873|ref|YP_003352853.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12723193|gb|AAK04425.1|AE006269_10 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106837|gb|ABJ71977.1| Predicted transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281374631|gb|ADA64151.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] gi|300069966|gb|ADJ59366.1| Transcriptional regulator, Cro/CI family protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326405905|gb|ADZ62976.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 97 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ + L+Q+++ + ++ I+ +E K + LA TL T + +L Sbjct: 3 NKIRELRRLSHLSQEDVAHIAHVSRQTINAIENDKYDPELTLAFKLAETLGTTVDELF 60 >gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + +RK ++Q ++ G +S E G + I+ +I +A + Sbjct: 5 RSVIGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTTLPGIEQLIRIATVFNVAPG 64 Query: 79 KLL 81 +LL Sbjct: 65 ELL 67 >gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] Length = 194 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE KL+QKEI ++ +S E G+S I + +LA + LL Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQMLADFFGVHIGYLL 59 >gi|307705640|ref|ZP_07642491.1| hypothetical protein SMSK597_1597 [Streptococcus mitis SK597] gi|307620816|gb|EFN99901.1| hypothetical protein SMSK597_1597 [Streptococcus mitis SK597] Length = 303 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P + Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|253755143|ref|YP_003028283.1| DNA-binding protein [Streptococcus suis BM407] gi|251817607|emb|CAZ55354.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 76 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQK + N F+ + +++E G+ + D ++ L+ + LL Sbjct: 3 QRIRDLREDHDLTQKFVANLLSFSHTNYAKIERGEIALTADVLVQLSKLYNVSTDYLL 60 >gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 157 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 16 VIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 75 Query: 81 L 81 L Sbjct: 76 L 76 >gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] Length = 378 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK LTQ+++ N G + IS E G ++ +I L+ TLD L +LL Sbjct: 7 GKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDISLNELL 65 >gi|188585373|ref|YP_001916918.1| transcriptional regulator [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350060|gb|ACB84330.1| transcriptional regulator [Natranaerobius thermophilus JW/NM-WN-LF] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R E +LTQ+++ R + IS +E GK ++ + + L L L Sbjct: 6 KIKSARLEQELTQEQLAKRVKATRQTISLIEAGKYNPSLKLCLAICKVLGKTLDDLF 62 >gi|163795463|ref|ZP_02189430.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159179449|gb|EDP63980.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 481 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L + + + R R + L+Q E+ + G + S+++ +E + + + + L + + Sbjct: 6 LDRKAMLGHKIRRFRLDQGLSQTEMAAQIGISPSYLNLIEHNQRPVTVPLLFKLGNAFEI 65 Query: 76 PLWK 79 L + Sbjct: 66 DLKE 69 >gi|134045177|ref|YP_001096663.1| XRE family transcriptional regulator [Methanococcus maripaludis C5] gi|132662802|gb|ABO34448.1| putative transcriptional regulator, XRE family [Methanococcus maripaludis C5] Length = 218 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 6 RDEPHLSDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + + ER I +N N + R++ K+TQ ++ +G +QS +S LE GK I Sbjct: 3 KSGKMYDKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 60 >gi|89896146|ref|YP_519633.1| hypothetical protein DSY3400 [Desulfitobacterium hafniense Y51] gi|219670564|ref|YP_002460999.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335594|dbj|BAE85189.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540824|gb|ACL22563.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 98 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RKE L+Q E+ +G Q+ I+ LE ++ + ++ L + L L Sbjct: 31 SQIVEARKEKGLSQTELEAISGIKQTHIARLENNRNDPQLTTILKLLYPLGMTL 84 >gi|310827692|ref|YP_003960049.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612] gi|308739426|gb|ADO37086.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612] Length = 180 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 23/43 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 F N R IR+E ++Q+E+ + ++ +S+ E G ++ Sbjct: 3 FSENLRRIRRERGISQEELAEQLKVSRQAVSKWEQGNGYPEVE 45 >gi|302528211|ref|ZP_07280553.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302437106|gb|EFL08922.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 283 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A++ +E+ R G + +S +E GK+ + ++ + +A L T LL Sbjct: 18 VRQARTRARMPLRELARRIGVSAGTLSAVENGKTGLTVERLGRIADALGTSAADLL 73 >gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 112 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + R +R +L+Q E+ +Q I++ E GK+ + + LA D L Sbjct: 1 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|258655308|ref|YP_003204464.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558533|gb|ACV81475.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 148 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + P + R + R R+ T ++ R G + +SE+E G+ + Sbjct: 49 GTRTPGPAPARREPLWREVSGAVLREERRRQGRTLADVAGRAGMSVQHLSEVERGRKEAS 108 Query: 63 IDNMIILAHTLDTPLWKLLK 82 + + A +L L + + Sbjct: 109 SEMLAAAAGSLGLSLAEFTR 128 >gi|195937967|ref|ZP_03083349.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. EC4024] Length = 174 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 1 MSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 56 >gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + L+ + + G +++ ++++E+G+S +I + +A L + L Sbjct: 35 VAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSVAAFL 94 Query: 82 K 82 + Sbjct: 95 E 95 >gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris] gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ + +Q E+ R G ++ I+ LETGK ++ +A + + Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|150390025|ref|YP_001320074.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949887|gb|ABR48415.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +RKE L Q+++ N+ G + I +E K ++ + LA LDT + +L + Sbjct: 3 NKLKTLRKELGLRQEDVANQLGVTRQTIIAIENDKYNPTLELAMKLARFLDTTVEELFQ 61 >gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 180 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 28/58 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + TG +++ + ++E +S+ + + +A L+ P + P Sbjct: 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSLFITP 68 >gi|306834543|ref|ZP_07467656.1| transcriptional activator [Streptococcus bovis ATCC 700338] gi|304423345|gb|EFM26498.1| transcriptional activator [Streptococcus bovis ATCC 700338] Length = 283 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F +++IR+ LTQ+EI + A+S ++ +E G+ D I L ++ L Sbjct: 2 RWVFGKVYKDIRQSKGLTQEEICDDM-LARSTLARIEGGQVIPKFDTFIFLLQQINMNLE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|317152263|ref|YP_004120311.1| Cupin 2 barrel domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942514|gb|ADU61565.1| Cupin 2 conserved barrel domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 186 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ R+ KL+ +++ RTG + +I +E ++ ++ LA L L Sbjct: 5 GTRIRSYRERQKLSIEDLAERTGLTEEFIQAVEGTDMYPSLRPLVKLARALGVRL 59 >gi|238892801|ref|YP_002917535.1| putative regulatory protein [Klebsiella pneumoniae NTUH-K2044] gi|238545117|dbj|BAH61468.1| putative regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 76 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R+ R + +TQ ++ G QS+++++E G+ +++ +A L Sbjct: 8 EYQLVIKLLRSARIDRGITQSQLAKSLGKPQSFVAKVENGERRLDVIEFAAIARLLSLDP 67 Query: 78 WKLL 81 ++L Sbjct: 68 AEIL 71 >gi|291302869|ref|YP_003514147.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572089|gb|ADD45054.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 205 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 25 NFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +R LT ++ R T + I +E+G+ +++D + LA L P Sbjct: 19 RLRQLRDRLGLTVDDVVERCRRLGATDVTDNIIWNIESGRRKLSLDVTVTLAAALGVPFM 78 Query: 79 KLLKP 83 LL P Sbjct: 79 SLLVP 83 >gi|209964154|ref|YP_002297069.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209957620|gb|ACI98256.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 100 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDT 75 R R + +R++ LTQ+E+ NR GF ++I+++E G+ + D A L Sbjct: 15 RLRRAGGVELKRLREDRGLTQRELANRVGFDYYTFIAQIEGGRGRLPPDRYQSYADALGV 74 Query: 76 PLWKLLK 82 P + Sbjct: 75 PHQDFAR 81 >gi|254385028|ref|ZP_05000362.1| regulatory protein [Streptomyces sp. Mg1] gi|194343907|gb|EDX24873.1| regulatory protein [Streptomyces sp. Mg1] Length = 182 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ LT + R+G + ++S++E ++ ++ ++ +A L+T +LL Sbjct: 5 VRKRRRALHLTLAAVSARSGLSVPFLSQIENERARPSMRSLERVADALETTAVELL 60 >gi|169350485|ref|ZP_02867423.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] gi|169292805|gb|EDS74938.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] Length = 117 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N +RK+ L+Q+++ + + IS E+ + N + + L+ D + + Sbjct: 1 MTLGENILKLRKKQGLSQEQLGYQIDVTRQTISNWESEDTAPNPEQLKRLSKVFDISVDE 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|160939581|ref|ZP_02086929.1| hypothetical protein CLOBOL_04473 [Clostridium bolteae ATCC BAA-613] gi|158437372|gb|EDP15136.1| hypothetical protein CLOBOL_04473 [Clostridium bolteae ATCC BAA-613] Length = 366 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + N + IR+ L+Q+ + G + S IS ETG S + + ++ L D + Sbjct: 27 ARRVLKTNIKKIREVEGLSQEAFGKKYGKSMSSISNYETGMSLPSFEFLLTLREQYDFSM 86 Query: 78 WKLLK 82 + + Sbjct: 87 EEFIT 91 >gi|117617483|ref|YP_854772.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558890|gb|ABK35838.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 180 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 30/55 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + +R +A L+Q+E+ R+G +IS++E + + ++ ++ + + L Sbjct: 4 GHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVASLRKVLEGIPMSL 58 >gi|104781316|ref|YP_607814.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110303|emb|CAK15010.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 186 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R++RK T ++ R + ++S++E G S + ++ ++ L P Sbjct: 11 LARLVRDLRKHRGFTLDDLATRMNRSVGFLSQVERGLSRPTVADLTAISEALQVP 65 >gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 142 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 1 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|152975865|ref|YP_001375382.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024617|gb|ABS22387.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 66 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F+ + R +TQ+++ R G + IS LE GK ++ +A TL T + + Sbjct: 1 MAFITKIKEARARLHMTQEDLAKRVGVRRETISHLEKGKYNPSLQLAHDIAKTLQTTIDE 60 Query: 80 LL 81 + Sbjct: 61 IF 62 >gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] Length = 129 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE +TQ E+ + G +S+ E S +++++ LA + +L++ Sbjct: 3 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLSYPDVNSLPKLAGIFGISVDQLMQ 59 >gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905] Length = 218 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77 N R++A LTQ + + G + IS+ E G + N D + +A L Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 >gi|295107458|emb|CBL05001.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 79 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R E LTQ+E+ R G QS + LE+G + + + +A L L Sbjct: 26 ARAEQNLTQRELAERCGMRQSAFARLESGNANPTLKTLQQVAKGLGKKL 74 >gi|291525638|emb|CBK91225.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291540997|emb|CBL14108.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 116 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IR + TQ ++ + S++E G+ ++++ M+ + L Sbjct: 8 VGNTLRSIRNKYGYTQNDMAESLDVSYIHYSQIEQGRHRMSLELMLKIVTKYGVDPNTLF 67 >gi|256374197|ref|YP_003097857.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918500|gb|ACU34011.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 460 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R +R+ ++Q++I TG +QS +SE+ G+ + D + +A+ L P Sbjct: 34 YRLLRR-HGVSQRQIAALTGQSQSEVSEILKGRQVMAYDVLTRIANGLGVP 83 >gi|222147026|ref|YP_002547983.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734016|gb|ACM34979.1| transcriptional regulator [Agrobacterium vitis S4] Length = 131 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F + R +R+ ++QK++ G +++S LE G+ + D + +A + Sbjct: 4 FGDAVRGLRERKGVSQKDMAKAIGVTPAYLSALEHGRRGKPSFDLLQRIAGYFNI 58 >gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11] gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11] Length = 218 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77 N R++A LTQ + + G + IS+ E G + N D + +A L Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 >gi|254390294|ref|ZP_05005512.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811246|ref|ZP_06769889.1| putative AfsR-like transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703999|gb|EDY49811.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294323845|gb|EFG05488.1| putative AfsR-like transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 759 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 9/75 (12%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +RK + + D I F + R RKEA+++ E+ R +++ ++S +ETGK++ + Sbjct: 8 KRKVELFAMDDPIN-----FGSELRRRRKEAQMSISEMARRVHYSKGYLSRVETGKASGS 62 Query: 63 IDNMIILAHTLDTPL 77 LA D L Sbjct: 63 ----PALAQACDREL 73 >gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638] gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012] gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638] gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012] gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74] Length = 218 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77 N R++A LTQ + + G + IS+ E G + N D + +A L Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 >gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 370 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + ++A + + Sbjct: 2 EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|163869009|ref|YP_001610239.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018686|emb|CAK02244.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 146 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P PH +D + R RK K++QKE+ +R G I + E G + + Sbjct: 6 PYFPTKNPHSNDISI------GRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRV 59 Query: 62 NIDNMIILAHTLDTPLW 78 + +A LD ++ Sbjct: 60 GAGRLQEIADILDISIF 76 >gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 370 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 35/64 (54%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+++ +RKE +TQ+++ N G + + +S+ E+G S +I + ++A + + Sbjct: 2 EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTI 61 Query: 78 WKLL 81 LL Sbjct: 62 DTLL 65 >gi|30019824|ref|NP_831455.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127108|ref|ZP_04256105.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|29895369|gb|AAP08656.1| Transcriptional regulator, XRE family [Bacillus cereus ATCC 14579] gi|228656224|gb|EEL12065.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] Length = 404 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLE 55 >gi|29377017|ref|NP_816171.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344483|gb|AAO82241.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 427 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 3 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54 >gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27] gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27] Length = 218 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77 N R++A LTQ + + G + IS+ E G + N D + +A L Sbjct: 2 KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60 >gi|75761795|ref|ZP_00741729.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228900366|ref|ZP_04064595.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74490707|gb|EAO53989.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859253|gb|EEN03684.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 404 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RKE KLTQ + + +S +S++E GK+T ++ + +A L+ Sbjct: 4 LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLE 55 >gi|30265072|ref|NP_847449.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778382|ref|YP_021927.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65317017|ref|ZP_00389976.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870871|ref|ZP_02215523.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228930058|ref|ZP_04093068.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948759|ref|ZP_04111036.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124568|ref|ZP_04253753.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|30259749|gb|AAP28935.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47552087|gb|AAT34402.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713380|gb|EDR18905.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228658908|gb|EEL14563.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|228810891|gb|EEM57235.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829557|gb|EEM75184.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 79 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +AH + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|332637654|ref|ZP_08416517.1| hypothetical protein WcibK1_03097 [Weissella cibaria KACC 11862] Length = 70 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R R LTQKE+ N G + I+ +E G + I +A LDT L L Sbjct: 3 NSVRKYRTLKGLTQKELANAIGVTRQTIALIEKGTYNPTMKLAIAIATQLDTDLNSLF 60 >gi|302134931|ref|ZP_07260921.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 134 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ F + +R LTQ+ + + +++++S+LE +S+ ++ + L+ L Sbjct: 4 KIAFAAVLKAMRAGKGLTQRNLAEVS--SRTYVSKLERAQSSPTLEMISALSGPLSINPL 61 Query: 79 KLL 81 L+ Sbjct: 62 SLV 64 >gi|299536255|ref|ZP_07049568.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728241|gb|EFI68803.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 388 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 19 RMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IF + R KL+ E+ + + +S+ E+GKS + + ++L L P Sbjct: 2 KKIFNGQRLKEARLYNKLSITELAEKLNVTKQMVSKYESGKSDPSFEKSLLLTDILGYP 60 >gi|291485970|dbj|BAI87045.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 152 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + R RK + ++ +G ++S++S++E G ++ + ++ TL+ L + Sbjct: 1 MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|269218392|ref|ZP_06162246.1| DNA-binding protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212251|gb|EEZ78591.1| DNA-binding protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 99 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%) Query: 11 LSDAILRERM---IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-------- 59 + D+ ER IF R RKE L+Q+++ R ++ +E+ +S Sbjct: 1 MPDSSPLERQLANIFAMTIRARRKELGLSQEQVALRADIDRNHYQLMESARSDRRSNKAV 60 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 + + LA+ L+ P+ LL Sbjct: 61 NPRLFTLFRLANALELPVEDLL 82 >gi|256958187|ref|ZP_05562358.1| transcriptional regulator [Enterococcus faecalis DS5] gi|256948683|gb|EEU65315.1| transcriptional regulator [Enterococcus faecalis DS5] Length = 427 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 30/52 (57%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + L+ Sbjct: 3 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54 >gi|326204396|ref|ZP_08194254.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985428|gb|EGD46266.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 86 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R IR E LTQ E+ R G + +I +E+G +T + + I+A +LD + Sbjct: 5 LRKIRDELNLTQAEVAKRVGVTRQFIGMIESGAATPHPETAKIIATSLDLEKY 57 >gi|256848201|ref|ZP_05553644.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714799|gb|EEU29777.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 76 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81 N + R E + Q+++ + + ++IS++E G + I + LA L+ + +L+ Sbjct: 5 GINVASRRHELGMIQEKLAELSDLSINFISKVERGAATDIKAGTLQSLAKALNVSMDELM 64 >gi|240851106|ref|YP_002972508.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268229|gb|ACS51817.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 157 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 27/57 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+ R L+QK + + G + I + E G + ++ ++ +A L+ P+ Sbjct: 46 LIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEKGLNRVSAKCLLEIAQKLEVPI 102 >gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 64 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R +R A L+Q+ + R G ++ I+ +E G+ ++ I LA + ++ Sbjct: 3 NDVRELRGSAGLSQQALGERLGVSRQTINAIEQGRYDPSLPLAIRLARFFGRTVEEVF 60 >gi|194397827|ref|YP_002037955.1| putative transcriptional activator [Streptococcus pneumoniae G54] gi|194357494|gb|ACF55942.1| putative transcriptional activator [Streptococcus pneumoniae G54] Length = 287 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRXKRKEXXLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|163741613|ref|ZP_02149004.1| hypothetical protein RG210_19665 [Phaeobacter gallaeciensis 2.10] gi|161385347|gb|EDQ09725.1| hypothetical protein RG210_19665 [Phaeobacter gallaeciensis 2.10] Length = 171 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++A T ++ R G + + S +E G S + +D + +LA + L++ Sbjct: 38 QTLKQAREQAGFTLEQAAERIGISGASFSRMENGLSKVTMDRLEMLAALYEVSASALVE 96 >gi|161525495|ref|YP_001580507.1| helix-turn-helix domain-containing protein [Burkholderia multivorans ATCC 17616] gi|160342924|gb|ABX16010.1| helix-turn-helix domain protein [Burkholderia multivorans ATCC 17616] Length = 98 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R +RK L+Q+ + + +++++S LE + + + L +D Sbjct: 3 TAKHSLATAIRTVRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTMHKLTELCEVMDVH 60 Query: 77 LWKLLK 82 LL Sbjct: 61 PLTLLT 66 >gi|154509075|ref|ZP_02044717.1| hypothetical protein ACTODO_01592 [Actinomyces odontolyticus ATCC 17982] gi|293192294|ref|ZP_06609405.1| putative Helix-turn-helix domain protein [Actinomyces odontolyticus F0309] gi|153798709|gb|EDN81129.1| hypothetical protein ACTODO_01592 [Actinomyces odontolyticus ATCC 17982] gi|292820209|gb|EFF79203.1| putative Helix-turn-helix domain protein [Actinomyces odontolyticus F0309] Length = 104 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R IR+ T +E+ + + ++SE+E G+ + + + + L PLW Sbjct: 12 RSELGDVLRGIRQRQGRTLREVSSEAQVSLGYLSEVERGQKEASSELLEAITSALRVPLW 71 Query: 79 KLLK 82 +L+ Sbjct: 72 FVLR 75 >gi|121607724|ref|YP_995531.1| anaerobic benzoate catabolism transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552364|gb|ABM56513.1| transcriptional regulator, XRE family with shikimate kinase activity [Verminephrobacter eiseniae EF01-2] Length = 315 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 + +A + R +R + LT+K + G ++ ++ LE G +I Sbjct: 17 PQAAAPTDEAKNPLLVALGERVRKLRAQRGLTRKAVALAAGISERHLANLEYGTGNASIL 76 Query: 65 NMIILAHTLDTPLWKL 80 + +A L L +L Sbjct: 77 VLQQVAGALHCSLAEL 92 >gi|90415002|ref|ZP_01222963.1| hypothetical helix-turn-helix XRE-family like protein [Photobacterium profundum 3TCK] gi|90323872|gb|EAS40475.1| hypothetical helix-turn-helix XRE-family like protein [Photobacterium profundum 3TCK] Length = 115 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R R R+ +LTQ +I G A+ ++ETGK+ ++ +A L T Sbjct: 17 TDRKALAQRIRVARECRELTQVKIAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTD 76 Query: 77 LWKLLK 82 LL Sbjct: 77 YRFLLT 82 >gi|27817699|emb|CAD61126.1| putative transcription regulator [Cupriavidus oxalaticus] Length = 97 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IRK L+Q+ + + +++++S LE + ++ + L ++ Sbjct: 3 AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|27365376|ref|NP_760904.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|27361523|gb|AAO10431.1| Predicted transcriptional regulator [Vibrio vulnificus CMCP6] Length = 76 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + L+ + + GF++ ++ ++E I ++ + LA LD + LL Sbjct: 9 AQNIIDKRTKIGLSSSDASIKAGFSRGYLGKVERDGVRITVEKLYQLARVLDCEVTDLL 67 >gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 94 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR++ +Q +I G + IS E K+ ++ ++I LA L +L Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSVSLIRLADFYQISLDEL 60 >gi|325299457|ref|YP_004259374.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324319010|gb|ADY36901.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 96 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PRR + E L+ + RN R+ K+TQ ++ + G +S+IS++E+ + Sbjct: 20 PRRDKIEAELAS------LRVGIQIRNAREARKMTQSQLAEKIGKERSFISKVESDGKNL 73 Query: 62 NIDNMIIL 69 + + + Sbjct: 74 TLSTLYDI 81 >gi|312194192|ref|YP_004014253.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311225528|gb|ADP78383.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 306 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 29/57 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R+E+ LT E+ R+G +Q IS++E + T + +++ A LD P Sbjct: 15 ETVGAALARLRRESGLTGVEVAKRSGVSQGQISKIENSRVTPSQADVVRFAGALDLP 71 >gi|290956627|ref|YP_003487809.1| regulator protein [Streptomyces scabiei 87.22] gi|260646153|emb|CBG69246.1| putative regulator protein [Streptomyces scabiei 87.22] Length = 410 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTP 76 + + R+ TQ + G + W+S++E G + ID + LA L P Sbjct: 6 DHLSIGQRIAFYRERRGYTQPVLAGLVGHSTDWLSKIERGVRKPPRIDKLAELARVLRVP 65 Query: 77 LWKLL 81 L L+ Sbjct: 66 LSDLM 70 >gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 149 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RKE +TQ+E+ G + S + ET + + + +A L Sbjct: 1 MLNERIKKLRKERDITQEELAKNIGVSTSMVGMYETNARKPSYEVLSKIAKYFRVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|167957582|ref|ZP_02544656.1| UDP-N-acetylglucosamine transferase [candidate division TM7 single-cell isolate TM7c] Length = 508 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + R TQ ++ +QS I+ +E G I+++ + + L P+ + Sbjct: 11 GNLIQENRIMRGWTQAQLAEALDTSQSAINRIEKGGQNISLEMIARIGEVLARPIVNI 68 >gi|164686229|ref|ZP_02210259.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM 16795] gi|164601831|gb|EDQ95296.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM 16795] Length = 60 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R+E L QK + G S+ +E G ++D I + D + ++ + Sbjct: 2 SKLKQLREERGLPQKAVAKSVGITTSYYGMIELGTRRPSLDLAIRICKYFDLSVEEVFE 60 >gi|161503250|ref|YP_001570362.1| hypothetical protein SARI_01318 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864597|gb|ABX21220.1| hypothetical protein SARI_01318 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 200 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R++ K++ E+ +G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRRQKKISLDELSRLSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|157370308|ref|YP_001478297.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157322072|gb|ABV41169.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IR++ L+Q+ +G S IS +E K + I + L L Sbjct: 9 GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSL 63 >gi|460026|gb|AAC98432.1| repressor protein [Streptococcus pneumoniae] gi|183217361|gb|ACC59280.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|218473421|emb|CAV31131.1| hypothetical protein [Streptococcus pneumoniae] Length = 75 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRN-RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQ+ + +S S++E+G I+ID++I LA + L L+ Sbjct: 3 KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLV 61 >gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 169 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 4 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 63 >gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R E LTQ + G Q + ++E+G ST N N+ LA LD Sbjct: 1 MSVGERIKKRRVELGLTQANLAELAGIIQQSLQKIESG-STKNPRNLKALADALDCTPEF 59 Query: 80 L 80 L Sbjct: 60 L 60 >gi|329939039|ref|ZP_08288413.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus M045] gi|329301924|gb|EGG45817.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus M045] Length = 249 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ + +Q+E+ NR+ + +S +ETG++ + ++ LA LD PL + Sbjct: 5 LRGWRERRRFSQQELSNRSAVSTRHLSRVETGRARPTPEMILHLADHLDVPLRE 58 >gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 167 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|311110859|ref|ZP_07712256.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] gi|311066013|gb|EFQ46353.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri MV-22] Length = 112 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80 + R+ ++TQ+++ + + ++IS++E G I+I + +A L T + L Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDTIAKALQTSVITL 71 Query: 81 L 81 + Sbjct: 72 I 72 >gi|304407914|ref|ZP_07389564.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304342933|gb|EFM08777.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 72 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N R++R +TQ+++ + G + I +E GK + +++ +A L ++ Sbjct: 8 SNIRSLRFNHGEMTQQQLADLVGVTRQTIVAIEKGKYSPSLELAFRIARVFKLSLEEVFT 67 >gi|302519226|ref|ZP_07271568.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302428121|gb|EFK99936.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 279 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + + R R+ R+ A TQ + R +Q+ +S +E+GK T ++ ++ ++ Sbjct: 4 DPETLGQSRNDLAEMLRDQRRRAGKTQTWLARRCAMSQTKVSNIESGKLTPSLLDVEMML 63 Query: 71 HTLDT 75 L Sbjct: 64 EALGV 68 >gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 255 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 27/54 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + ++Q E+ + ++ +S E G++ N + + +L+ D + LL Sbjct: 9 ELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLL 62 >gi|226328630|ref|ZP_03804148.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] gi|225203363|gb|EEG85717.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] Length = 97 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R++R+ +T E+ G +Q S E G++ I+ + + L++ D Sbjct: 12 KLVGKKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLYCLSYFFDVEPEY 71 Query: 80 LL 81 L Sbjct: 72 FL 73 >gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 328 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ +Q+++ + ++ +S+ E+ S +++ +I LA + Sbjct: 1 MILADKIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSIPDLNRIITLAEIFEVSTDF 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|169830936|ref|YP_001716918.1| XRE family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637780|gb|ACA59286.1| putative transcriptional regulator, XRE family [Candidatus Desulforudis audaxviator MP104C] Length = 91 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R + +TQ + R G QS I+ LE+G++ +I + +A+ LD L ++P Sbjct: 37 RVKMGVTQAALAARIGTTQSVIARLESGRANPSIAFLKKIANALDADLDVSIRP 90 >gi|167462392|ref|ZP_02327481.1| hypothetical protein Plarl_07505 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 78 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ RK+ ++Q+++ G ++S I +E+G+ ++ + LA +T +L Sbjct: 7 QQFQIFRKKYNVSQRKVSIDLGVSESHIRNIESGRGNPDVILLFKLAKYFNTSPEELF 64 >gi|119433803|gb|ABL74963.1| TlmR2 [Streptoalloteichus hindustanus] Length = 399 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 RK A L Q ++ R + S + ++E G N + +A L P KL Sbjct: 10 GRTIARFRKAAGLNQHQLAARANISLSLLQKVEIGDRAANHSTIAGVARALHLPPEKL 67 >gi|123441160|ref|YP_001005148.1| putative transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088121|emb|CAL10909.1| putative transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 196 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R +T K++ + G ++S +S+LE ++ ++ + LA L+T + L+ Sbjct: 15 LGMRLRHARVAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|116249777|ref|YP_765615.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|241206954|ref|YP_002978050.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254425|emb|CAK05499.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|240860844|gb|ACS58511.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 125 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 F R +R ++QKE+ + +++S LE GK D + +A + Sbjct: 4 FGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58 >gi|114799059|ref|YP_759118.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739233|gb|ABI77358.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 143 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 LSDA +R + R R LTQ ++ + G + I + ETG + I+ + +A Sbjct: 6 LSDANQVDRQV-GERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQIA 64 Query: 71 HTLDT 75 L+ Sbjct: 65 EVLEV 69 >gi|39995474|ref|NP_951425.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39982237|gb|AAR33698.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] gi|298504474|gb|ADI83197.1| transcriptional regulator, XRE family [Geobacter sulfurreducens KN400] Length = 306 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMII 68 H I R IR+ +LTQ + + G IS E + ++ DN Sbjct: 7 HSDRTPTPIVAIDGTTIRRIREAKRLTQLYVASVVGVTTDTISRWENNRYPSVKRDNAEK 66 Query: 69 LAHTLDTPLWKLLK 82 LA L+ L +L+ Sbjct: 67 LAQALEVSLEDILR 80 >gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] Length = 73 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN R +R+ LTQ E+ R G + + +E G+ + ++ ++ T L + Sbjct: 9 NNIRALREAEGLTQAELARRIGVTRQTLIAIEQGRYSPTLELAFQISRNFGTGLDDVF 66 >gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 148 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE KLTQ+E+ G ++ I E G+ I D LA + + LL Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLL 59 >gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 181 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +R+ + +TG +++ + ++E G+S+ + + +A + P Sbjct: 8 LGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62 >gi|239981315|ref|ZP_04703839.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] Length = 105 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R+ LTQ+E+ +R G ++ IS++E G + + + A L Sbjct: 37 GRKLAELRRARGLTQQEVADRMGVSKGRISQIERGHLSGQ-EVLARFATALG 87 >gi|255284008|ref|ZP_05348563.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265461|gb|EET58666.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ LTQ E+ ++ S E K + + ++++A P+ L+ Sbjct: 6 LGKKLRALRERRHLTQAEVSALLHIERAAYSNYENDKRIPSFETLLLIADFYGVPVEYLI 65 Query: 82 K 82 + Sbjct: 66 R 66 >gi|222151832|ref|YP_002560992.1| hypothetical protein MCCL_1589 [Macrococcus caseolyticus JCSC5402] gi|222120961|dbj|BAH18296.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 415 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RN+RKE KLT + + + +S +E K+ +++++ +A L T + LL Sbjct: 4 LGSRIRNLRKEKKLTLEALAGDY-MTKGMLSLIENNKNNPSMESLEYIAERLGTSVSALL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|222081941|ref|YP_002541306.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726620|gb|ACM29709.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 471 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ER IF R +R +TQ + + + S+++ +E + + + ++ L+ Sbjct: 1 MVERKIFAGPKVRRVRNGLGMTQIAMADALEISPSYLNLIERNQRPLTVQLLLKLSSAFK 60 Query: 75 TPLWKL 80 L L Sbjct: 61 IDLDDL 66 >gi|197285845|ref|YP_002151717.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683332|emb|CAR44039.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 375 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N R R +L+ +++ R G + +I LE+G + + LA L Sbjct: 4 GSNLRLARLYHELSLEQVAERVGKTRQYIQRLESGYALPTKELTDELAFVLQV 56 >gi|167771894|ref|ZP_02443947.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM 17241] gi|167665692|gb|EDS09822.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM 17241] Length = 188 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK+ ++ +E+ + + S++S++E K+ ++ + ++ L + KLL Sbjct: 4 LGMNIKAERKKQNISLQELASWVQVSTSFLSQIENEKNEPSLTTLKRISTCLGVTVSKLL 63 >gi|90962618|ref|YP_536534.1| Cro/CI family transcriptional regulator [Lactobacillus salivarius UCC118] gi|90821812|gb|ABE00451.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius UCC118] gi|300215223|gb|ADJ79639.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius CECT 5713] Length = 267 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + +R E TQKEI + +S E G + LA+ + P+ L Sbjct: 2 NRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYL 58 >gi|52079830|ref|YP_078621.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785200|ref|YP_091029.1| YqaE [Bacillus licheniformis ATCC 14580] gi|52003041|gb|AAU22983.1| probable transcriptional regulator (phage-related) [Bacillus licheniformis ATCC 14580] gi|52347702|gb|AAU40336.1| YqaE [Bacillus licheniformis ATCC 14580] Length = 122 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R +RK L+QK++ G A+S IS E + + +I +A D + L Sbjct: 3 FGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSIDYL 62 Query: 81 LK 82 L+ Sbjct: 63 LR 64 >gi|42779585|ref|NP_976832.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47567216|ref|ZP_00237930.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|42735501|gb|AAS39440.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556059|gb|EAL14396.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 83 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 15 VRRKDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTT 74 Query: 77 LWKLL 81 + KL Sbjct: 75 VDKLF 79 >gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] Length = 205 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 205 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 205 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 205 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] Length = 71 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ + R +LTQ ++ ++ IS +E G+ +++ LA D + + +P Sbjct: 3 NDLKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYNPSLELAFHLAEYFDCSIEDIFEP 62 >gi|289642438|ref|ZP_06474584.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289507783|gb|EFD28736.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 120 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R++ T +E+ + + ++SE+E G+ + + + + L L Sbjct: 5 RRMLGEALRRRRQDQHRTLREVSSNARVSLGYLSEIERGQKEASSELLASICDALGVRLA 64 Query: 79 KLLK 82 LL+ Sbjct: 65 DLLR 68 >gi|257877769|ref|ZP_05657422.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811935|gb|EEV40755.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 74 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQ +I +QS S E G+ I I +I LA+ +T + L+ Sbjct: 2 FQRIRDLREDNDLTQHQIATLLNISQSTYSRYENGELEIPIQTLIKLANYYNTSIDYLV 60 >gi|305681555|ref|ZP_07404361.1| repressor protein CI family protein [Corynebacterium matruchotii ATCC 14266] gi|305658715|gb|EFM48216.1| repressor protein CI family protein [Corynebacterium matruchotii ATCC 14266] Length = 95 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R+ A + Q ++ ++TG +++ I+ +ETG++ + I+A Sbjct: 19 RVKLAREYAGMQQHDLADKTGLSRTSIANMETGRTKPRKKTITIIASATGV 69 >gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 191 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ R G +++ I ++E G+S+ + L+ + L+ Sbjct: 15 RIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLI 71 >gi|210617044|ref|ZP_03291379.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] gi|210149567|gb|EEA80576.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] Length = 333 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI +RK+ +Q+E+ + ++ +S+ E+ S ++ +++L+ Sbjct: 1 MILAEKIMELRKKNGWSQEELAEKIHVSRQSVSKWESSASIPDLSKILLLSQVFGVSTDY 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLR 63 >gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 205 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|111221926|ref|YP_712720.1| hypothetical protein FRAAL2501 [Frankia alni ACN14a] gi|111149458|emb|CAJ61148.1| Putative multi-domain regulatory protein [Frankia alni ACN14a] gi|116633610|emb|CAH69512.1| putative AfsR-like regulatory protein [Frankia alni] Length = 734 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 11 LSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMI 67 ++D R F R +R+ LTQ+E+ G + +S LE G+ T + Sbjct: 1 MNDPSGPARKARSFAAVLRELREARSLTQQELAAAAGLSVDAVSALERGRRTQPQPHTVR 60 Query: 68 ILAHTLD 74 LA L Sbjct: 61 SLASALQ 67 >gi|222055067|ref|YP_002537429.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564356|gb|ACM20328.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 115 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ A ++Q+++ G ++ I + E GK +N D + +A L + + Sbjct: 16 QLRERAGISQEKLAEHVGVSKGQIQKYEYGKDKMNTDKLQRVADALSVSVQEFF 69 >gi|121595255|ref|YP_987151.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42] gi|120607335|gb|ABM43075.1| helix-turn-helix domain protein [Acidovorax sp. JS42] Length = 97 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IRK L+Q+ + + +++++S LE + ++ + L ++ Sbjct: 3 AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R A +TQ E+ R G + + +E GK + +++ +A TPL + + Sbjct: 9 NRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKYSPSLEVAFQIAEVFKTPLTDVFE 68 >gi|330981004|gb|EGH79107.1| hypothetical protein PSYAP_20928 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 104 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R+ L+Q+ + +S+ ++E G+ I ID +I LA L+ L+ Sbjct: 14 LRRRKGLSQENL---ISIDRSYWGQIERGEVNITIDVLIRLATLLEVEPASLI 63 >gi|326797649|ref|YP_004315468.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548413|gb|ADZ76798.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 193 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N + RK +T +E+ +R ++ IS++E + ++ +I + +LD L Sbjct: 10 GNQIKERRKNKGITVQELADRASVSKGLISQIENNRVIPSLMVLIEIIKSLDVDL 64 >gi|229082949|ref|ZP_04215370.1| transcriptional regulator [Bacillus cereus Rock4-2] gi|228700349|gb|EEL52914.1| transcriptional regulator [Bacillus cereus Rock4-2] Length = 186 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 31/60 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+++ + ++ IS E ++ +I N+++++ + L L+K Sbjct: 4 GRQIQYLRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVK 63 >gi|225571494|ref|ZP_03780490.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] gi|225159571|gb|EEG72190.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] Length = 73 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R ++Q+++ + I +E GK ++ + + L L L Sbjct: 4 KKMKLARINMDMSQEDLARHVDVTRQTIGMIEAGKFNPSLRLCLAICRALGVTLNDLF 61 >gi|295838540|ref|ZP_06825473.1| regulatory protein [Streptomyces sp. SPB74] gi|197697836|gb|EDY44769.1| regulatory protein [Streptomyces sp. SPB74] Length = 279 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + + R R+ R+ A TQ + R +Q+ +S +E+GK T ++ ++ ++ Sbjct: 4 DPETLGQSRNDLAEMLRDQRRRAGKTQTWLARRCAMSQTKVSNIESGKLTPSLLDVEMML 63 Query: 71 HTLDT 75 L Sbjct: 64 EALGV 68 >gi|134097736|ref|YP_001103397.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006304|ref|ZP_06564277.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910359|emb|CAM00472.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 399 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R+ L+QKE+ + G ++SW+S++E G ++D + +L Sbjct: 8 GERIRIYRQRRGLSQKELAHLVGRSESWLSQVERGIR--SVDRLSVLVDVARV 58 >gi|78186700|ref|YP_374743.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166602|gb|ABB23700.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 107 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLLK 82 RK + +TQ + ++ G +S IS LE GK T +I + A + L L+ Sbjct: 41 RELLAARKRSGMTQDAVASKIGTTKSAISRLEACGKHTPSITTLRKYAEAVGCDLIIKLE 100 Query: 83 P 83 P Sbjct: 101 P 101 >gi|56695987|ref|YP_166341.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677724|gb|AAV94390.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 465 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R IR LTQK+ + G + +++++E ++ ++ LA Sbjct: 3 TQKLYAGAKLREIRNRLSLTQKDFAAKLGVSLPYLNQMENNNRPVSTSVVLALAQEFGLD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|146278343|ref|YP_001168502.1| hypothetical protein Rsph17025_2308 [Rhodobacter sphaeroides ATCC 17025] gi|145556584|gb|ABP71197.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R + LTQK R G + +++++E ++ ++ LA + Sbjct: 3 QKLYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDV 62 Query: 78 WKL 80 KL Sbjct: 63 TKL 65 >gi|312905525|ref|ZP_07764639.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631254|gb|EFQ14537.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 418 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R R+E TQ+ + + G ++S +S++E G ++ + + ++ +L Sbjct: 3 QVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQE 62 Query: 76 PLW 78 + Sbjct: 63 EIV 65 >gi|269123234|ref|YP_003305811.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] gi|268314560|gb|ACZ00934.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] Length = 77 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK +TQ+++ + +IS +E G T ++ +A +LDT ++ + Sbjct: 3 NRIKEVRKVKNITQQKLVENISITRQYISLIELGNETPSLKVANEIAMSLDTCIYSIF 60 >gi|302530338|ref|ZP_07282680.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439233|gb|EFL11049.1| transcriptional regulator [Streptomyces sp. AA4] Length = 183 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R++ T E+ TG + S +S LE+G+ ++ ++ ++ PL +L+ Sbjct: 12 VGPRLRHFRRQRNCTLDELSTATGISISTLSRLESGQRKATLELLLPISRAHRVPLDELV 71 >gi|239628526|ref|ZP_04671557.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518672|gb|EEQ58538.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 114 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R + + ++ Q ++ TG S +SE +G+ + I N I++A D L L+ Sbjct: 8 FNENLRLLLIQKEMKQADLCRMTGIQTSLMSEYISGRKSPTIRNAILIADAFDISLDTLV 67 >gi|237801497|ref|ZP_04589958.1| Fis family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024356|gb|EGI04413.1| Fis family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 154 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R IR A L +++ ++ +++ +E G+ +I+I+ + + L Sbjct: 4 REALGQVLREIRVAAGLRREDCS--AALSREYLAGVERGQRSISIEKLHSICDCLGITP 60 >gi|284992987|ref|YP_003411541.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066232|gb|ADB77170.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 170 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R A+++ +E+ G + ++S++E G + + + +A L L Sbjct: 44 VGEFIREQRSAARVSLRELARTAGVSNPYLSQVERGLRKPSAEILAAIAKGLKISAETL 102 >gi|226949745|ref|YP_002804836.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841807|gb|ACO84473.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 124 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 I N + IR E L+ ++ + ISE+E+GK ++N + +A+ L+ K Sbjct: 4 ILGENIKKIRTEKGLSAYKLSKLAKVGTTTISEIESGKRQSLNSTTIEKIANALNISTDK 63 Query: 80 LL 81 L+ Sbjct: 64 LM 65 >gi|226306228|ref|YP_002766188.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229490856|ref|ZP_04384691.1| putative transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|226185345|dbj|BAH33449.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229322246|gb|EEN88032.1| putative transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 126 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R ++ R R T +E+ N + ++SE+E G+ + + + + L PL Sbjct: 6 REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDALAVPLS 65 Query: 79 KLL 81 +L Sbjct: 66 DVL 68 >gi|255505268|ref|ZP_05345130.3| conserved domain protein [Bryantella formatexigens DSM 14469] gi|255269040|gb|EET62245.1| conserved domain protein [Bryantella formatexigens DSM 14469] Length = 86 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++R F + R ++TQ+E+ + G ++ I +LE + ++ +A D Sbjct: 15 KDRYKFESKIHIYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLAYSIAKVFDVT 74 Query: 77 LWKLL 81 + L Sbjct: 75 IEDLF 79 >gi|169827791|ref|YP_001697949.1| DNA-binding protein [Lysinibacillus sphaericus C3-41] gi|168992279|gb|ACA39819.1| DNA-binding protein [Lysinibacillus sphaericus C3-41] Length = 417 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE KLT + + + +S++E K+ +++++ +A L +LL Sbjct: 4 LGARIRKLRKEKKLTLEALAGD-RLTKGMLSQIENEKAKPSMESLDYIAERLGVKASELL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|154497138|ref|ZP_02035834.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] gi|150273537|gb|EDN00665.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M RKE L+Q+ + ++ G ++ I + E+ S ++ ++ L+ P+ Sbjct: 1 MTVGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGW 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|126650699|ref|ZP_01722915.1| DNA-binding protein [Bacillus sp. B14905] gi|126592364|gb|EAZ86382.1| DNA-binding protein [Bacillus sp. B14905] Length = 416 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RKE KLT + + + +S++E K+ +++++ +A L +LL Sbjct: 4 LGARIRKLRKEKKLTLEALAGD-RLTKGMLSQIENEKAKPSMESLDYIAERLGVKASELL 62 Query: 82 K 82 + Sbjct: 63 E 63 >gi|111225688|ref|YP_716482.1| putative regulatory protein [Frankia alni ACN14a] gi|111153220|emb|CAJ64970.1| Putative protein; Putative regulatory protein [Frankia alni ACN14a] Length = 277 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + +R R +R+ LT + TG +Q IS+LE G+ + ++ IL Sbjct: 2 DPERYVADRETLAARLRELRRATGLTGVQAAASTGMSQPKISKLENGRLLPSEHDVEILL 61 Query: 71 HTL 73 Sbjct: 62 DLY 64 >gi|110803374|ref|YP_699815.1| LacI family transcription regulator [Clostridium perfringens SM101] gi|110683875|gb|ABG87245.1| DNA-binding protein [Clostridium perfringens SM101] Length = 223 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|94264958|ref|ZP_01288729.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|94265765|ref|ZP_01289500.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453700|gb|EAT04081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93454561|gb|EAT04839.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 101 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + RK LTQ + + G QS IS++E GK + + + + +A LD Sbjct: 7 KKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLDLEPV 61 >gi|49187883|ref|YP_031136.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167634898|ref|ZP_02393216.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639942|ref|ZP_02398210.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685616|ref|ZP_02876839.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707037|ref|ZP_02897494.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652240|ref|ZP_02934743.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567224|ref|ZP_03020139.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033157|ref|ZP_03100570.1| DNA-binding protein [Bacillus cereus W] gi|218906227|ref|YP_002454061.1| DNA-binding protein [Bacillus cereus AH820] gi|227817802|ref|YP_002817811.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603307|ref|YP_002869269.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687363|ref|ZP_05151220.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725376|ref|ZP_05187159.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254733728|ref|ZP_05191444.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254740566|ref|ZP_05198257.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254753172|ref|ZP_05205208.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761515|ref|ZP_05213536.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|49181810|gb|AAT57186.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167512023|gb|EDR87401.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529648|gb|EDR92397.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128140|gb|EDS97010.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670080|gb|EDT20820.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172082246|gb|EDT67312.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561728|gb|EDV15698.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195994586|gb|EDX58541.1| DNA-binding protein [Bacillus cereus W] gi|218539421|gb|ACK91819.1| DNA-binding protein [Bacillus cereus AH820] gi|227005411|gb|ACP15154.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229267715|gb|ACQ49352.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 73 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +L+Q ++ G ++ IS +E G +I + +AH + P+ ++ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFT 63 >gi|56418607|ref|YP_145925.1| hypothetical protein GK0072 [Geobacillus kaustophilus HTA426] gi|261417572|ref|YP_003251254.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297528447|ref|YP_003669722.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319765229|ref|YP_004130730.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|56378449|dbj|BAD74357.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261374029|gb|ACX76772.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297251699|gb|ADI25145.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317110095|gb|ADU92587.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 73 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ + G + S + E+E G + + +A L+ + Sbjct: 2 EAERWGRRIRAFRKLKGYTQERLAKELGISVSILGEIERGNRMPSDSLVGQIAERLNISV 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 EELAPP 67 >gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 94 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR++ +Q +I G + IS E K+ ++ ++I LA L +L Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 94 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR++ +Q +I G + IS E K+ ++ ++I LA L +L Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 67 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E LTQ E+ +R ++ ++ LETGK ++ LA + + + Sbjct: 3 NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYDPSLPLAFRLARLFGLRIEDIFQ 61 >gi|325279953|ref|YP_004252495.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311762|gb|ADY32315.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 74 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +RK LT +E+ S +S+ E+G I + ++ L+ L L KL Sbjct: 11 FGQKLQQLRKNQSLTLQELEAIVDIDNSNLSKYESGSIDIRLTSLYKLSKALGITLSKLF 70 Query: 82 K 82 + Sbjct: 71 E 71 >gi|323126423|gb|ADX23720.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 110 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR + +TQ+++ + ++ +LE + I I+ + + + LD + Sbjct: 11 AKRIRKIRLQRGMTQEQLEEKADLGVNYAYKLENLATNIKINTLEKVLNALDITITDFF 69 >gi|319939730|ref|ZP_08014087.1| XRE family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811068|gb|EFW07379.1| XRE family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 61 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ ++ RK L+Q ++ + G ++ I+ +E K ++ I LA L T L L Sbjct: 2 NHVKDFRKNLGLSQLDLAKQIGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59 >gi|307293728|ref|ZP_07573572.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] gi|306879879|gb|EFN11096.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] Length = 467 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R ++ R +R+E L Q + G + S+++ LE + + ++ LA+ D Sbjct: 4 DRKLYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDID 63 Query: 77 LWKLL 81 + + Sbjct: 64 IRDFV 68 >gi|291535748|emb|CBL08860.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis M50/1] gi|291538243|emb|CBL11354.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis XB6B4] Length = 334 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI RK+ +Q+E+ + ++ +S+ E+ +S ++ +I L+ Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEIFGVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|260427243|ref|ZP_05781222.1| helix-turn-helix domain protein [Citreicella sp. SE45] gi|260421735|gb|EEX14986.1| helix-turn-helix domain protein [Citreicella sp. SE45] Length = 228 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R+ + IRK LTQ+ + + +G I ++E+G+ + + LA Sbjct: 2 ETMERDAQYIATQCKYIRKMFSLTQENLADASGLTVRTIQKVESGRHVPEVQTLRSLARG 61 Query: 73 LDTPLWKLLKP 83 L + KP Sbjct: 62 LGFDITVFSKP 72 >gi|253580532|ref|ZP_04857797.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848262|gb|EES76227.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 105 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + +N+R++ LTQ ++ + G +IS +E ++ +++ + A L Sbjct: 2 ETENYGSLIKNLRQKMGLTQNQVADSLGVTPGYISNVENNRTAMSLRILTYYARLTGCSL 61 Query: 78 WKLL 81 L+ Sbjct: 62 DSLV 65 >gi|258406639|ref|YP_003199380.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798866|gb|ACV69802.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 468 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 26/54 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I N R R E L+Q + TG +Q +S E KST+ D + LA TL Sbjct: 3 IAGNQLRETRLELGLSQARLAELTGISQHLLSAYELEKSTLAPDLIQKLASTLQ 56 >gi|209551516|ref|YP_002283433.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537272|gb|ACI57207.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 125 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 F R +R ++QKE+ + +++S LE GK D + +A + Sbjct: 4 FGEAIRKLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58 >gi|153812486|ref|ZP_01965154.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] gi|149831411|gb|EDM86499.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] Length = 70 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI N + +R++ LTQK++ + ++ I+ +ETGK ++ +A + + + Sbjct: 1 MILKNRVKELREKEGLTQKKLGEKVNVSRQAINAIETGKYDPSLWLAYDIAQLFNMSIEE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|94272166|ref|ZP_01292081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93450214|gb|EAT01505.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 100 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + RK LTQ + + G QS IS++E GK + + + + +A LD Sbjct: 6 KKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLDLEPV 60 >gi|332072175|gb|EGI82661.1| transcriptional activator [Streptococcus pneumoniae GA41301] Length = 299 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|293433580|ref|ZP_06662008.1| DNA-binding protein [Escherichia coli B088] gi|291324399|gb|EFE63821.1| DNA-binding protein [Escherichia coli B088] Length = 200 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK+ K++ E+ R G ++ + E+E ++ +I + LA + + Sbjct: 20 EAVSQRIKLYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSITMLCRLAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|260575913|ref|ZP_05843908.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259021839|gb|EEW25140.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 465 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R IR LTQK ++ G + +++++E ++ ++ LA T Sbjct: 3 TQKLYAGVKLREIRARLGLTQKAFADKLGVSLPYLNQMENNHRPVSASVVLALAQEFGTD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|237737466|ref|ZP_04567947.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421328|gb|EEO36375.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 152 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F + R++ L+QK++ + G I ++E G I + ++ L+ Sbjct: 10 FALLIKKFREDRGLSQKQLAEKAGIGSGTIGDIERGDRKGKISTLDKISKALN 62 >gi|308235749|ref|ZP_07666486.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114657|ref|YP_003985878.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946151|gb|ADP38855.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ K+TQ+E+ N G + I+ +ETGK ++ +A D + ++ Sbjct: 7 RLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIF 60 >gi|149182579|ref|ZP_01861050.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] gi|148849715|gb|EDL63894.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1] Length = 177 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 28/46 (60%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +RKE K TQ++I ++ +S+ +++E G+ + D +A+ L+ Sbjct: 10 LRKERKFTQQQIADKAFIDRSYYAQIEKGERKPSDDVAKKIANILE 55 >gi|126180158|ref|YP_001048123.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862952|gb|ABN58141.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 68 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R +A +TQ+E+ + G + I LE GK ++ +AHTL + + ++ Sbjct: 4 RIRELRAKAGITQEELAQQVGVRRETIVFLEKGKYNPSLKLAYKVAHTLGSTIEEVFT 61 >gi|126179762|ref|YP_001047727.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862556|gb|ABN57745.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+ + N G + I +E GK +++ +A + + Sbjct: 3 NRIKVYRAMHDLTQEGLANELGVTRQTILAIEKGKYDPSLELAFKIAGFFGVTIEDIF 60 >gi|328882155|emb|CCA55394.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 254 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 7 DEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 D A R+ F ++R + LTQ + R G Q IS +E G + + Sbjct: 18 DTDEYEKAHQDARLAFMLGQMVYDLRTKLGLTQTALAERAGMKQPAISRIEGGGTVPTLP 77 Query: 65 NMIILAHTLDTPLWKLLKP 83 + LA LD L P Sbjct: 78 LLRRLADALDADLNISFTP 96 >gi|298248193|ref|ZP_06971998.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297550852|gb|EFH84718.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 922 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R+E TQ+ + + + E G +++ L+ L PL +L Sbjct: 11 LKQAREEKGWTQRRLALELDVDEKTVQSWERGTRFPSLEYRKQLSDLLGKPLEQL 65 >gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268] gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268] Length = 331 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + +RK+ +Q+++ + ++ IS+ E +S +++ ++ L+ Sbjct: 1 MILADKIIELRKKNGWSQEDLAEKLDVSRQSISKWEGAQSIPDMNKILKLSEVFSVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|300779089|ref|ZP_07088947.1| cro/CI family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504599|gb|EFK35739.1| cro/CI family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 102 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R +L+Q ++ ++ + +E G + I+N++ L + LD + Sbjct: 10 KFQIGKLIQVYRLRKELSQFQLGLELNISKDHVGRIERGLTNPTIENIVKLCNFLDINIL 69 Query: 79 KLLK 82 L Sbjct: 70 FLFT 73 >gi|220912228|ref|YP_002487537.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|325962842|ref|YP_004240748.1| hypothetical protein Asphe3_14400 [Arthrobacter phenanthrenivorans Sphe3] gi|219859106|gb|ACL39448.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] gi|323468929|gb|ADX72614.1| Helix-turn-helix protein [Arthrobacter phenanthrenivorans Sphe3] Length = 119 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R++R+ T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 5 RHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 SMLR 68 >gi|167764135|ref|ZP_02436262.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC 43183] gi|167698251|gb|EDS14830.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC 43183] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + I + +R E LTQ+++ + + S ++E G++ + + + +A L Sbjct: 6 KKIAGQQLQLLRLEKNLTQEQMSEKLNLSTSAYCKIEYGETDLTLTRLDKIAKVLGISAL 65 Query: 79 KLL 81 L Sbjct: 66 SLF 68 >gi|160891591|ref|ZP_02072594.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC 8492] gi|270295331|ref|ZP_06201532.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478327|ref|ZP_07937491.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|156858998|gb|EDO52429.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC 8492] gi|270274578|gb|EFA20439.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905486|gb|EFV27276.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|108743321|dbj|BAE95424.1| putative DNA-binding protein [Streptomyces kanamyceticus] Length = 280 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +++Q E+ R + IS +ETG+S + + ++ LA LD P+ Sbjct: 26 LRAWRERRRVSQLELALRADSSARHISFVETGRSRPSEEFLLRLADHLDVPMRD 79 >gi|27380892|ref|NP_772421.1| hypothetical protein bll5781 [Bradyrhizobium japonicum USDA 110] gi|27354058|dbj|BAC51046.1| bll5781 [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 31/57 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ R R+ +++Q ++ + +S +ETG++ + D ++ LA LD PL + Sbjct: 19 GDHLREWRQRRRMSQLDLAGEAEISARHLSFVETGRAAPSRDMVLRLAERLDVPLRE 75 >gi|83956064|ref|ZP_00964546.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. NAS-14.1] gi|83839630|gb|EAP78809.1| transcriptional regulator, XRE family protein [Sulfitobacter sp. NAS-14.1] Length = 110 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +RKR ++ L IF R R E +T +++ +R +++ + +E G Sbjct: 2 KRKRSYSRVTKQALS---IFGKLIRVARTERGMTAQDLADRANISRTTLYNIEKGAPGPE 58 Query: 63 IDNMIILAHTLDTPLWK 79 I + +A + L+ Sbjct: 59 IGTVFEVAALVGVRLFD 75 >gi|332686463|ref|YP_004456237.1| Cro/CI family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332370472|dbj|BAK21428.1| transcriptional regulator, Cro/CI family [Melissococcus plutonius ATCC 35311] Length = 279 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + IRK+ LTQK + +Q +S +E G+ NI M L L + +++ Sbjct: 4 FGSIIKKIRKQQHLTQKMLSEDI-CSQGVLSRIENGEELPNIMVMQRLCQRLGVTMDQIM 62 >gi|322833805|ref|YP_004213832.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169006|gb|ADW74705.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 87 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ R +A+LTQ+++ G A+S +S+ E G + N D M A L+ P Sbjct: 5 RLKSARTKARLTQEKLGVLAGIDESTARSRVSQYENGTYSPNFDTMCHFARVLNVP 60 >gi|321312988|ref|YP_004205275.1| transcriptional regulator [Bacillus subtilis BSn5] gi|320019262|gb|ADV94248.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 152 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + R RK + ++ +G ++S++S++E G ++ + ++ TL+ L + Sbjct: 1 MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|296110846|ref|YP_003621227.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] gi|295832377|gb|ADG40258.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] Length = 296 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F + +R++ L+Q+ + + ++ +S+ E G + +I +I LA L L Sbjct: 2 KNVFKSQLSLLRQKKNLSQEALAQKLYVSRQSVSKWEHGDAEPDIAKLISLAEILAVDLN 61 Query: 79 KLL 81 LL Sbjct: 62 FLL 64 >gi|238925758|ref|YP_002939275.1| hypothetical protein EUBREC_3415 [Eubacterium rectale ATCC 33656] gi|238877434|gb|ACR77141.1| Hypothetical protein EUBREC_3415 [Eubacterium rectale ATCC 33656] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + + Sbjct: 32 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISMYFNMLVED 91 Query: 80 LL 81 + Sbjct: 92 VF 93 >gi|319425143|gb|ADV53217.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 153 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 I + IR++ KLTQ E+ G + + ++E G++T++IDN+ Sbjct: 8 ILALTIKQIREDRKLTQSEVAELMGMSGAGWGKIENGQATLSIDNIDKFCKL 59 >gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis H37Rv] gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97] gi|121637061|ref|YP_977284.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660915|ref|YP_001282438.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148822343|ref|YP_001287097.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167969266|ref|ZP_02551543.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402959|ref|ZP_03415140.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215410750|ref|ZP_03419558.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426424|ref|ZP_03424343.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215445295|ref|ZP_03432047.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752816|ref|ZP_03531612.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557015|ref|ZP_03536091.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224989534|ref|YP_002644221.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799830|ref|YP_003032831.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254231403|ref|ZP_04924730.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|254364034|ref|ZP_04980080.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|254550127|ref|ZP_05140574.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186058|ref|ZP_05763532.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260200171|ref|ZP_05767662.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260204374|ref|ZP_05771865.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289442559|ref|ZP_06432303.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446719|ref|ZP_06436463.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289555084|ref|ZP_06444294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289569125|ref|ZP_06449352.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573782|ref|ZP_06454009.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744873|ref|ZP_06504251.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289749665|ref|ZP_06509043.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289757219|ref|ZP_06516597.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289761269|ref|ZP_06520647.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|294993308|ref|ZP_06798999.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297633669|ref|ZP_06951449.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297730656|ref|ZP_06959774.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298524627|ref|ZP_07012036.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|306775285|ref|ZP_07413622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306781801|ref|ZP_07420138.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306788203|ref|ZP_07426525.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792532|ref|ZP_07430834.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306967199|ref|ZP_07479860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|307079114|ref|ZP_07488284.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307083678|ref|ZP_07492791.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657986|ref|ZP_07814866.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|2117223|emb|CAB09040.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880746|gb|AAK45418.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31617911|emb|CAD94021.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium bovis AF2122/97] gi|121492708|emb|CAL71177.1| Probable transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600462|gb|EAY59472.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|134149548|gb|EBA41593.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|148505067|gb|ABQ72876.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148720870|gb|ABR05495.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224772647|dbj|BAH25453.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321333|gb|ACT25936.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289415478|gb|EFD12718.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289419677|gb|EFD16878.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289439716|gb|EFD22209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289538213|gb|EFD42791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542879|gb|EFD46527.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289685401|gb|EFD52889.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289690252|gb|EFD57681.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708775|gb|EFD72791.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289712783|gb|EFD76795.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298494421|gb|EFI29715.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|308216217|gb|EFO75616.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308325442|gb|EFP14293.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308335215|gb|EFP24066.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339022|gb|EFP27873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308355148|gb|EFP43999.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308363022|gb|EFP51873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308366671|gb|EFP55522.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323720411|gb|EGB29505.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326904644|gb|EGE51577.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328459575|gb|AEB04998.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 486 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 L A R R +R+E LTQ + + S++++LE + I + ++ Sbjct: 4 SNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLL 63 Query: 68 ILAHTLDTP 76 +L D Sbjct: 64 LLTERFDLS 72 >gi|148243867|ref|YP_001220106.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400430|gb|ABQ28964.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] Length = 133 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R +R + Q ++ G Q+ ISELE G+ I++D + L L + + Sbjct: 14 FGQLIRKVRISFGVRQADLAAMVGTRQATISELERGRLNIHLDLALNLMRHLGIEIRE 71 >gi|152966546|ref|YP_001362330.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151361063|gb|ABS04066.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 210 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ T ++ TG + S +S LE+G+ ++ +++LA PL +L+ Sbjct: 23 VGSRLRALRRNRGATLNDLSTNTGISISTLSRLESGRRRPTLELLLLLARAHHVPLDELV 82 >gi|319782361|ref|YP_004141837.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168249|gb|ADV11787.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + + + R +LT +++ + G S++S+LE G S N ++++A+ L Sbjct: 20 RRSTVLGDRIKAYRTTRRLTLRQLGDMIGTTASFLSQLERGLSGANTSTLMLIANALGIS 79 Query: 77 LWKLL 81 L L Sbjct: 80 LADLF 84 >gi|313886866|ref|ZP_07820570.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|332299951|ref|YP_004441872.1| transcriptional regulator, XRE family [Porphyromonas asaccharolytica DSM 20707] gi|312923663|gb|EFR34468.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|332177014|gb|AEE12704.1| transcriptional regulator, XRE family [Porphyromonas asaccharolytica DSM 20707] Length = 474 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + IR + +L E++ RTG + I+++ETG D + L+ +LL+P Sbjct: 26 LKEIRADRRLQLLEVQRRTGIESTLINKIETGIKMPTSDQVSKLSKAYGLDPEELLEP 83 >gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 371 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R++A +TQ ++ N G ++S +S+ ET S +I + LA + + +L+ Sbjct: 6 LGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTSYPDIIFLPQLATLFNVTVDELM 65 >gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 120 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R EA LTQ +I +Q ++ E G+ + + + A + L Sbjct: 1 MFPERLKALRLEANLTQNDIAKSLNISQPSYAQWENGRRKPSSETLEKFAQFYNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|257090410|ref|ZP_05584771.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|256999222|gb|EEU85742.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|315034707|gb|EFT46639.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0027] gi|315578682|gb|EFU90873.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 125 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R TQ+++ + G ++ S E ++ + + ++ LA D L Sbjct: 1 MLGNKLKQLRISKNKTQQQVADYLGITRAAYSHFENNRNDPDKETLVKLAILFDVTTDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225378702|ref|ZP_03755923.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] gi|225209539|gb|EEG91893.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK KL+Q E+ + G + I+ +E GK T ++ +AH + + ++ Sbjct: 3 NRIKELRKANKLSQGELADIVGTTRQTITSIEVGKYTASLGLAYKIAHYFNLTIEEVF 60 >gi|194302996|ref|YP_002014265.1| gp49 [Mycobacterium phage Boomer] gi|194153044|gb|ACF34111.1| gp49 [Mycobacterium phage Boomer] Length = 77 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ + E+ +G + ++S+LE G N LA L P+ L +P Sbjct: 10 QELRVIRERTGWSSAELSRESGISAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 69 >gi|194291881|ref|YP_002007788.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193225785|emb|CAQ71731.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG 19424] Length = 297 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + +Q + G +Q IS LE+G++ + + ++ LA L PL + Sbjct: 18 LRYWRGKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQ 71 >gi|168205827|ref|ZP_02631832.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168213491|ref|ZP_02639116.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|169343302|ref|ZP_02864312.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169298600|gb|EDS80681.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170662662|gb|EDT15345.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170715060|gb|EDT27242.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 223 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|149921371|ref|ZP_01909825.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] gi|149817804|gb|EDM77268.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] Length = 266 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R RK L+Q ++ +IS +ETG+S + ++ L L L Sbjct: 9 FGERLRAWRKRRGLSQMDLAIEADSTPRYISFIETGRSRPGRELVLRLVEALQLSLRD 66 >gi|116695851|ref|YP_841427.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113530350|emb|CAJ96697.1| Transcriptional Regulator [Ralstonia eutropha H16] Length = 320 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 7 DEPHLSDAIL---RERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 D H SDA ++ F R +R LT+K G ++ ++ LE G Sbjct: 16 DLHHDSDARAANGTDKNPFLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSG 75 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 +I + +A L L LL Sbjct: 76 NASILVLQHIADALQCSLAGLL 97 >gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L] gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 4 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|328554901|gb|AEB25393.1| hypothetical protein BAMTA208_16205 [Bacillus amyloliquefaciens TA208] Length = 77 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 NF+ IR +TQ + G + +++S +E G ++ +LA + Sbjct: 6 ENFKLIRLFKGMTQAQFAKYLGISPTYVSMIENGTRAVSTKAERVLAMDFEV 57 >gi|330816215|ref|YP_004359920.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327368608|gb|AEA59964.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 282 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +Q + G +Q IS +E+G+S D ++ LA L+ PL + Sbjct: 15 LGELLRYWRGVRGASQLGLSLEAGISQRQISFIESGRSVPGRDTLLTLAQALEVPLRE 72 >gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 205 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + + G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|320534010|ref|ZP_08034566.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces sp. oral taxon 171 str. F0337] gi|320133778|gb|EFW26170.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces sp. oral taxon 171 str. F0337] Length = 101 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ R A LTQ E+ R G QS IS +E G ++ + +A LD L Sbjct: 35 RLQLAELVYAARTRAGLTQTELAGRMGTQQSVISAVENGGQVPSVSTLWRIARALDLRL 93 >gi|296876453|ref|ZP_06900504.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432446|gb|EFH18242.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 108 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R ++ +TQ+++ + ++ +LE + I I + + L+ L Sbjct: 10 KRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIDALNVDL 63 >gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 190 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +RKE +TQ+E + +S ETG + +I ++ +A + + +++ Sbjct: 7 GSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVNMPDISLLVDIAEFFNVSIPEII 65 >gi|239995180|ref|ZP_04715704.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii ATCC 27126] Length = 187 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 + R I ++ +++RK L+ + TG +++ + ++E G+S+ I + Sbjct: 2 TKANAQPSAISRSI-AHHLQSVRKARGLSLDKTAQLTGVSKAMLGQIERGESSPTIATLW 60 Query: 68 ILAHTL 73 +A L Sbjct: 61 KIATGL 66 >gi|238022673|ref|ZP_04603099.1| hypothetical protein GCWU000324_02582 [Kingella oralis ATCC 51147] gi|237865876|gb|EEP67012.1| hypothetical protein GCWU000324_02582 [Kingella oralis ATCC 51147] Length = 131 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR++ ++TQ+E+ + + S S++E G++ + + + +A+ L L+ Sbjct: 5 EKIRFIREQQQMTQEEMAEKLNLSTSGYSKIERGETKLQFEKLQQVANIFKIDLTDLI 62 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R I + RKE LT + + G AQ +S E G + IN+ +++ +A LDT Sbjct: 9 VDRFI-GKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTS 67 Query: 77 L 77 + Sbjct: 68 I 68 >gi|222087820|ref|YP_002546358.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725268|gb|ACM28424.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 159 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R + R +R + L+Q E+ + G + + + E+GK+ I+ + ++A L+ Sbjct: 30 PVDRHV-GQQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVIASRLNV 88 Query: 76 PLWKLL 81 P+ + Sbjct: 89 PVNRFF 94 >gi|209883668|ref|YP_002287525.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] gi|209871864|gb|ACI91660.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] Length = 148 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R R L+Q+++ + G I + E G + I + +A Sbjct: 14 SAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIA 73 Query: 71 HTLDTPLWKLLK 82 L P+ L + Sbjct: 74 DILQVPVSFLFE 85 >gi|170016379|ref|YP_001727298.1| ABC transporter ATPase [Leuconostoc citreum KM20] gi|169803236|gb|ACA81854.1| ATPase component of ABC transporters with duplicated ATPase domains [Leuconostoc citreum KM20] Length = 299 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F + +R+ +++Q+ + + ++ +S+ E G + +ID +I L+ L Sbjct: 2 KNVFKSQLSVLRQRKRISQEVLAQKLFVSRQSVSKWENGDAEPDIDKLISLSDIFAVDLD 61 Query: 79 KLL 81 LL Sbjct: 62 FLL 64 >gi|156934014|ref|YP_001437930.1| hypothetical protein ESA_01840 [Cronobacter sakazakii ATCC BAA-894] gi|156532268|gb|ABU77094.1| hypothetical protein ESA_01840 [Cronobacter sakazakii ATCC BAA-894] Length = 199 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE K+T + R G ++ + ELE + +I + +A L + LL Sbjct: 15 LAQKLKAWRKEHKVTLDALSQRAGVSKGMLVELEKAAANPSIAILCKVAAALGLSVADLL 74 >gi|29374794|ref|NP_813946.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29342252|gb|AAO80018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|315578086|gb|EFU90277.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 447 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 33/56 (58%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + + L+ Sbjct: 19 KAVRGVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIINVLN 74 >gi|302541253|ref|ZP_07293595.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302458871|gb|EFL21964.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 90 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E + E+ +R+G A+ + E+E G++ + LAH LDTP +L Sbjct: 17 LGRLRAERGWSYDELASRSGLARRTVIEIEQGRTVGTLKTWHALAHALDTPFDELF 72 >gi|257057612|ref|YP_003135444.1| putative transcriptional regulator with C-terminal CBS domains [Saccharomonospora viridis DSM 43017] gi|256587484|gb|ACU98617.1| predicted transcriptional regulator with C-terminal CBS domains [Saccharomonospora viridis DSM 43017] Length = 293 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 ++ + R N R+ R A TQ+++ G Q I+++E+G + ++ + Sbjct: 10 MASTVTSRRKQLGNELRHARLAAGFTQQQVAEILGCTQGKINKIESGAVGAKLGDVRRML 69 Query: 71 HTLDT 75 Sbjct: 70 EAYGV 74 >gi|297190002|ref|ZP_06907400.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718661|gb|EDY62569.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 209 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R++ T I + TG + S +S +ETG+ ++ ++ L L +L Sbjct: 14 GPRLRATREQRGATLAGISSATGISPSTLSRIETGRRKPTLEVVLRLVKEYGVSLDEL 71 >gi|2231995|gb|AAC45921.1| aldehyde dehydrogenase [Azotobacter vinelandii] Length = 185 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 6 VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLMEFF 65 >gi|18311546|ref|NP_563480.1| hypothetical protein CPE2564 [Clostridium perfringens str. 13] gi|18146230|dbj|BAB82270.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 223 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|307292241|ref|ZP_07572105.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496747|gb|EFM66300.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 418 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+E TQ+ + + G ++S +S++E G ++ + + ++ +L + Sbjct: 9 LGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQEEIV 65 >gi|317057449|ref|YP_004105916.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449718|gb|ADU23282.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 195 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R A LTQK++ + + +S+ E G ++ + LA T + LL Sbjct: 10 IRQLRLAAGLTQKQLAEKVNVSDKAVSKWECGNGAPDVSLLTDLAEIFGTDVNTLL 65 >gi|300814822|ref|ZP_07095058.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511068|gb|EFK38332.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 367 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE +TQ+E+ ++ +S+ ETG+S +I + LA + + +L+ Sbjct: 5 GENILQKRKERGITQEELAEFMMVTKASVSKWETGQSYPDILLLPKLATFFNISVDELI 63 >gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 101 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +R R + S+ + ER + ++RK +TQ ++ G Q IS++E G ++ Sbjct: 17 KRARIDAIKSEMVDAER---GHELASLRKAQGMTQVQVAKAMGVTQGRISQIERGGVRLD 73 Query: 63 IDNMIILAHTLDTPL 77 M H + L Sbjct: 74 TSTMSAYLHAIGGEL 88 >gi|227488686|ref|ZP_03919002.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum ATCC 51867] gi|227091347|gb|EEI26659.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum ATCC 51867] Length = 85 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R + LT +++ + + ++SELE G+ ++ + + + L + Sbjct: 4 REALGTALRTFRADNHLTLRQLADLARVSPGYLSELERGRKEVSSELLASVCRALGVSVA 63 Query: 79 KLL 81 +L Sbjct: 64 DVL 66 >gi|268591074|ref|ZP_06125295.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313881|gb|EFE54334.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 106 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRKE LT +E+ R +Q IS ETGK+ + + M + + L Sbjct: 13 GQYLRGIRKERNLTGEELAKRLNISQQQISRYETGKTKLTFEMMDTILLIFNKSWRDLF 71 >gi|221232714|ref|YP_002511868.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855479|ref|YP_002736991.1| transcriptional activator [Streptococcus pneumoniae JJA] gi|220675176|emb|CAR69760.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723991|gb|ACO19844.1| transcriptional activator [Streptococcus pneumoniae JJA] Length = 299 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|167763862|ref|ZP_02435989.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC 43183] gi|167697978|gb|EDS14557.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC 43183] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|167463651|ref|ZP_02328740.1| predicted transcription regulator, containing DNA-binding HTH domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 64 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+E ++Q+++ G ++ I +E G+ ++ + + + + Sbjct: 3 NRVRELREERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVF 60 >gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E+ R G IS +E + + ++ ++ + L L + Sbjct: 3 VGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPITLAEFF 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|103487196|ref|YP_616757.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977273|gb|ABF53424.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 186 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R +R+ LT +E+ R I LETG T+++ M +A LD +L+ Sbjct: 3 NSIRTVRRAKGLTLEEVAQRCDPPTTAQTIGRLETGTRTLSLGWMNRIAAALDVDAAELV 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|25010888|ref|NP_735283.1| hypothetical protein gbs0833 [Streptococcus agalactiae NEM316] gi|77413146|ref|ZP_00789346.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 515] gi|23095267|emb|CAD46477.1| Unknown [Streptococcus agalactiae NEM316] gi|77160847|gb|EAO71958.1| transcriptional regulator, Cro/CI family-related protein [Streptococcus agalactiae 515] Length = 71 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +I N + +R + Q E+ TG ++ IS +E G+ T ++ + ++ L Sbjct: 3 LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKVSQVFKESLEN 62 Query: 80 LL 81 + Sbjct: 63 VF 64 >gi|328466150|gb|EGF37309.1| transcriptional regulator, XRE family protein [Lactobacillus helveticus MTCC 5463] Length = 117 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS LE K I+I + +A L+T + Sbjct: 5 LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTNTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 190 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R RKE +L+Q + + + IS E ++ ++ ++I+L+ + L +L+ Sbjct: 3 VGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDLYHLIVLSSLFNVSLDQLV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|317126051|ref|YP_004100163.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] gi|315590139|gb|ADU49436.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] Length = 138 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+L+ +++ G + ++S++E G + + + +A L+ L Sbjct: 7 LGAYLREQRENAQLSLRQLAEIAGISNPYLSQIERGLKKPSAEILQQIAKGLEVSAESL 65 >gi|315106651|gb|EFT78627.1| cupin domain protein [Propionibacterium acnes HL030PA1] Length = 194 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 26/73 (35%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R + T ++ + G ++ + +E G + ++ L+ Sbjct: 1 MDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLS 60 Query: 71 HTLDTPLWKLLKP 83 L L L++P Sbjct: 61 DALGVGLPALVEP 73 >gi|326779215|ref|ZP_08238480.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326659548|gb|EGE44394.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 265 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + R+ A LTQ+E+ + +S I+ +E G+ + ++ L L T Sbjct: 5 YGEWLKAQREAAGLTQQELADLAFMTRSHIAHIEAGRRMPSGEDAQRLDRALGT 58 >gi|294013107|ref|YP_003546567.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676437|dbj|BAI97955.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 471 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R ++ R +R+E L Q + G + S+++ LE + + ++ LA+ D Sbjct: 4 DRKLYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDID 63 Query: 77 LWKLL 81 + + Sbjct: 64 IRDFV 68 >gi|302562555|ref|ZP_07314897.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302480173|gb|EFL43266.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 384 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R L+Q E+ G + +S LE+G + LA L L Sbjct: 7 FGRRLKRLRTARGLSQAEVVGD-GMSTGHLSRLESGGRRPTERTVAYLARRLGVDASALT 65 Query: 82 KP 83 P Sbjct: 66 GP 67 >gi|262194441|ref|YP_003265650.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077788|gb|ACY13757.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R+ RK LTQ++ R + + +E G + ++ + LA Sbjct: 10 GNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGAAIPSVSMLRRLAVAFG 61 >gi|218132388|ref|ZP_03461192.1| hypothetical protein BACPEC_00247 [Bacteroides pectinophilus ATCC 43243] gi|217992726|gb|EEC58728.1| hypothetical protein BACPEC_00247 [Bacteroides pectinophilus ATCC 43243] Length = 115 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R IR + TQ + R + S++E G+ ++++ M+ + LL Sbjct: 9 VGDALRTIRNKLGYTQNNMAERLDVSYIHYSQIEQGRHRMSLELMMKIVSEFGIEPNTLL 68 >gi|254419340|ref|ZP_05033064.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185517|gb|EDX80493.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 256 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L E+ + +R+ A L+Q++ R + E G + +D +I LA + Sbjct: 8 TTLTEQQSLGEALKRLRQRAGLSQEQAAERAEIVEITWRRYEKGVRGVTLDKLIGLAMAI 67 Query: 74 DTPLWKLL 81 LL Sbjct: 68 GFDRDALL 75 >gi|120404585|ref|YP_954414.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957403|gb|ABM14408.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 195 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +T +++ R+ S +S LE+GK + +D++ LA L +LL+ Sbjct: 26 GMTLEDVATRSNIDISTLSRLESGKRRLALDHLPRLASALSVSTDELLR 74 >gi|27376700|ref|NP_768229.1| hypothetical protein bsl1589 [Bradyrhizobium japonicum USDA 110] gi|27349841|dbj|BAC46854.1| bsl1589 [Bradyrhizobium japonicum USDA 110] Length = 78 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 ++ + +RK A L Q ++ N+ G QSW++ LE+G+ I++ +I L + Sbjct: 6 TSPIQKKL-AAMLVELRKGAGLRQVDLANKLGVYQSWVTHLESGQRRIDVVELIELGRAI 64 Query: 74 DTPLWKLLK 82 ++++ Sbjct: 65 GFDPAEVVR 73 >gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK678] gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1] gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 167 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62 >gi|289644398|ref|ZP_06476479.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505791|gb|EFD26809.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 261 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R+ +L+Q E+ N+ + +S +ETG+S + +I L+ L+ PL + Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMIIRLSEHLNVPLRE 68 >gi|238750620|ref|ZP_04612120.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia rohdei ATCC 43380] gi|238711268|gb|EEQ03486.1| Transcriptional regulator, XRE family with cupin sensor domain [Yersinia rohdei ATCC 43380] Length = 196 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R ++T K++ + G ++S +S+LE ++ ++ + LA L+T + L+ Sbjct: 15 LGMRLRHARLAQEITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|237811223|ref|YP_002895674.1| helix-turn-helix domain protein [Burkholderia pseudomallei MSHR346] gi|237506820|gb|ACQ99138.1| helix-turn-helix domain protein [Burkholderia pseudomallei MSHR346] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IRK L+Q+ + + +++++S LE + ++ + L ++ Sbjct: 3 AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTLNKLAELCEVMEVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|215430004|ref|ZP_03427923.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 486 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 L A R R +R+E LTQ + + S++++LE + I + ++ Sbjct: 4 SNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLL 63 Query: 68 ILAHTLDTP 76 +L D Sbjct: 64 LLTERFDLS 72 >gi|166091592|ref|YP_001654042.1| putative transcriptional regulator [Bacillus thuringiensis] gi|165875369|gb|ABY68524.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 130 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N R +R L KE+ + G A S IS E + + + + ++ + +LL Sbjct: 6 FGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFEMLQKISIYFNVSTDRLL 65 >gi|197123495|ref|YP_002135446.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173344|gb|ACG74317.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 477 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R++ LTQ ++ +R G + S+++ +E + + +I LA L L Sbjct: 8 LGAKVRALRRQRNLTQVQLADRLGISASYLNLIEHNRRPLPAQLLIKLADLFQLDLKSL 66 >gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] Length = 194 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +++R++ +LTQ ++ + + IS+ ETG+ +I + LA L + +LL Sbjct: 7 GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRGFPDISLLKPLACALQVSIPELL 65 >gi|281354888|ref|ZP_06241382.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281317768|gb|EFB01788.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 174 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++RK+A+L+ ++ +G + S IS+LE ++ +D + LA +LL Sbjct: 9 LRDLRKKAQLSIADVSAGSGVSASVISKLERNQTRAELDTLYRLARVFGITAAELL 64 >gi|117621210|ref|YP_858380.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562617|gb|ABK39565.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 7 DEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 H +A+++E + +R E + TG +++ + ++E G+S+ + Sbjct: 33 SSKHNKEAVMQEMNQHLAQRLKGLRSELGWSLDVAARETGVSKAMLGQIERGESSPTVAT 92 Query: 66 MIILAHTLDTPLWKLLKP 83 + +A ++P Sbjct: 93 LWKIATGFRVSFSSFIEP 110 >gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ +Q E+ R G ++ I+ LETGK ++ +A + + Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 175 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK KLTQ+ + + G S IS E G D + +A+ L + + Sbjct: 8 KFVGMKIKEFRKNKKLTQQGLADLVGVKNSAISNYEQGTRIPKRDFLFRVANALGVSIDE 67 Query: 80 LL 81 Sbjct: 68 FF 69 >gi|329115880|ref|ZP_08244597.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906285|gb|EGE53199.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 108 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 N +R LTQ+ + + G + + +E G++ I ++ + + + L+ Sbjct: 5 KSISNRIYELRLSKHLTQETLAEKAGMDVNALGRIERGQNYNIKVETLDKIINALEV 61 >gi|325979442|ref|YP_004289158.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179370|emb|CBZ49414.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 119 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RKEA LTQ+++ + Q+ S E G T + LA + L Sbjct: 1 MFPERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRTPIFPTIEKLAELFNVSTDYL 60 >gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + R R R +R+ T ++ +G ++S + LE G++ + + L Sbjct: 6 QSGAVLRRSRQQIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNVPSYLTLARL 65 Query: 70 AHTLDTPL 77 A L+ + Sbjct: 66 AKALEVEI 73 >gi|295839000|ref|ZP_06825933.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] gi|295827275|gb|EDY46352.2| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. SPB74] Length = 279 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 25/51 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 F + R+ A LTQ+ + + + S+I++ E+GK +D L + Sbjct: 20 FGEELKRFRETAGLTQQALGDMVYVSASYIAQFESGKRKPQLDVSERLDNV 70 >gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E L+Q+ + R G + S+++ +E + ++ +I L LD + L Sbjct: 10 IRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEAL 64 >gi|297157341|gb|ADI07053.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 107 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R E L+Q E+ R G Q +S +E G + + + LA LD L Sbjct: 34 LGQAVYDRRIELGLSQAELAERAGMTQPQVSRMEGGDTVPTLPLLRRLAKALDGSL 89 >gi|258593399|emb|CBE69738.1| Transcriptional regulator, Cro/CI family [NC10 bacterium 'Dutch sediment'] Length = 81 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RK+ LTQ ++ G QS++S+ E G+ ++ I + L LK Sbjct: 17 LRQKRKDRGLTQADLAATLGKPQSFVSKYEAGERLLSFVETIDVCRALGIDPATFLK 73 >gi|291464763|ref|YP_003518234.1| PbsX family transcriptional regulator [Cupriavidus metallidurans CH34] gi|288247469|gb|ADC45357.1| transcriptional regulator, PbsX family [Cupriavidus metallidurans CH34] Length = 110 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F R +R+ K Q+ + + +++++S LE G + +D + LA L+ Sbjct: 12 RENFGGALRTVRRFRKAPQEALDVVS--SRTYVSSLERGLKSPTLDKIDSLAEALNVHPL 69 Query: 79 KLL 81 L+ Sbjct: 70 TLV 72 >gi|269795618|ref|YP_003315073.1| hypothetical protein [Sanguibacter keddieii DSM 10542] gi|269097803|gb|ACZ22239.1| Helix-turn-helix protein [Sanguibacter keddieii DSM 10542] Length = 109 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R+ T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 5 RREIGDVLRDARQLQGRTLREVSSAARVSLGYLSEVERGQKEASSELLGSICEALDIPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 SILR 68 >gi|320013022|gb|ADW07871.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 394 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R+ A+LTQ+E+ +R ++ S ++++E G N+D + +A L Sbjct: 10 GTRIKEQRRLARLTQRELADRLPYSYSLLNQVECGAKPANLDFVAAVARALHV 62 >gi|260101481|ref|ZP_05751718.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084695|gb|EEW68815.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 117 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS LE K I+I + +A L+T + Sbjct: 5 LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTNTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|237717599|ref|ZP_04548080.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] gi|229453103|gb|EEO58894.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] Length = 358 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IF ++ R A + + + G ++ +S+ E GK + +I +A+ L+ Sbjct: 5 EIFAKRLKSARIMAGWSMDMLCEKIGNLISKQSVSKYENGKMMPDSSVLIAIANALNLDP 64 Query: 78 WKLLKP 83 +P Sbjct: 65 DYFFRP 70 >gi|258516832|ref|YP_003193054.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780537|gb|ACV64431.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 131 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 8 EPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 + +L ++++I NN + + TQ +I G +S+I ++ G ++ Sbjct: 48 LRQDNKPVLQKDKVILRNNLKQALTLSGKTQSKIAQEIGVNRSYIGQIFRGCYDPSVKLA 107 Query: 67 IILAHTLDTPLWK 79 +IL +L+ P K Sbjct: 108 LILLQSLNYPPEK 120 >gi|228967299|ref|ZP_04128334.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228792334|gb|EEM39901.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + +RK L Q+++ + ++S ++ E G S ++ + LA + L Sbjct: 2 KTFSETLKTLRKSRSLRQEDLAHELNLSRSQVNNYENGFSEPDLTTLFRLASYFNVTLDV 61 Query: 80 L 80 L Sbjct: 62 L 62 >gi|227545534|ref|ZP_03975583.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227184485|gb|EEI64556.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 119 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81 N + R E K+TQ+E+ N T + +++S LE G+ I + +A L T + KL+ Sbjct: 5 GVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVEYIRALTLSKIAKGLKTTMEKLI 64 >gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 205 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 28/72 (38%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 R R+ +T K + ++S +S++E GK++ ++ + L Sbjct: 13 DDRPSAANHGRLGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKASPSLPMLHRLV 72 Query: 71 HTLDTPLWKLLK 82 L T + + + Sbjct: 73 EVLGTNIGWMFE 84 >gi|182679366|ref|YP_001833512.1| helix-turn-helix domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182635249|gb|ACB96023.1| helix-turn-helix domain protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 129 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Query: 4 RKRDEPHLSDAILRERMIFV-----NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 RK++ S+A L + + + RK +TQ ++ G Q ++S+LE+ + Sbjct: 46 RKKELEEGSNAALPAEVSASLLRGDSLLKAFRKWRGMTQIDLAKAAGLGQGYLSDLESRR 105 Query: 59 STINIDNMIILAHTLDTPLWKLLK 82 + + LA LD L++ Sbjct: 106 RGGTPETLASLATALDIDPAWLVE 129 >gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E L+Q+ + R G + S+++ +E + ++ +I L LD + L Sbjct: 10 IRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEAL 64 >gi|71281030|ref|YP_270695.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71146770|gb|AAZ27243.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 199 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++IR KLT +E N T A S +S++E + + M LA L+ L +L Sbjct: 21 GAQLKSIRIRNKLTLREAANLTNLAASTLSKIENEQISPTFTVMQKLATGLNIELPQLFT 80 >gi|73748040|ref|YP_307279.1| hypothetical protein cbdb_B6 [Dehalococcoides sp. CBDB1] gi|73659756|emb|CAI82363.1| hypothetical protein, containing a helix-turn-helix motif [Dehalococcoides sp. CBDB1] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 E+ R++R L+ +E+ ++G + + +S++E+G+ + + LA P Sbjct: 5 EKTNVGVYLRSLRDTKGLSLREVERKSGVSNAVLSQIESGQVKRPSPTTLYKLAELYGVP 64 Query: 77 LWKLL 81 +L+ Sbjct: 65 YDELM 69 >gi|94311960|ref|YP_585170.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|160898170|ref|YP_001563752.1| helix-turn-helix domain-containing protein [Delftia acidovorans SPH-1] gi|221067657|ref|ZP_03543762.1| helix-turn-helix domain protein [Comamonas testosteroni KF-1] gi|93355812|gb|ABF09901.1| transcription regulator (helix turn helix motif) XRE family [Cupriavidus metallidurans CH34] gi|160363754|gb|ABX35367.1| helix-turn-helix domain protein [Delftia acidovorans SPH-1] gi|220712680|gb|EED68048.1| helix-turn-helix domain protein [Comamonas testosteroni KF-1] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IRK L+Q+ + + +++++S LE + ++ + L ++ Sbjct: 3 AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|329962332|ref|ZP_08300337.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328530193|gb|EGF57074.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|325568077|ref|ZP_08144518.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325158278|gb|EGC70429.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 163 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R++ KLTQ + + IS+ E G + + NMI +A LD L L Sbjct: 5 ILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETL 64 Query: 81 L 81 L Sbjct: 65 L 65 >gi|269126908|ref|YP_003300278.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311866|gb|ACY98240.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 270 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT----GFAQSWISELETG 57 PRR+R + + F R R+EA LTQ+ + R G ++ ++E+G Sbjct: 3 PRRRRGN------VSPTLLAFGRQLRRYREEAGLTQESLGRRANNGRGVTSQYVGQVESG 56 Query: 58 KSTIN 62 ++ + Sbjct: 57 RTRCS 61 >gi|258436121|ref|ZP_05689104.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257848810|gb|EEV72795.1| conserved hypothetical protein [Staphylococcus aureus A9299] Length = 242 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 8 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 61 >gi|257868206|ref|ZP_05647859.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874521|ref|ZP_05654174.1| predicted protein [Enterococcus casseliflavus EC10] gi|257802320|gb|EEV31192.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808685|gb|EEV37507.1| predicted protein [Enterococcus casseliflavus EC10] Length = 166 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R++ KLTQ + + IS+ E G + + NMI +A LD L L Sbjct: 8 ILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|257430904|ref|ZP_05607284.1| phage repressor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257278334|gb|EEV08970.1| phage repressor protein [Staphylococcus aureus subsp. aureus 68-397] Length = 242 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 8 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 61 >gi|296109709|ref|YP_003616658.1| transcriptional regulator, XRE family [Methanocaldococcus infernus ME] gi|295434523|gb|ADG13694.1| transcriptional regulator, XRE family [Methanocaldococcus infernus ME] Length = 307 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW- 78 I + +R+E K++ E+ G ++ I + E + ++D I + LD PL Sbjct: 122 KIDGETLKRVREEKKISVGELAEAVGVSRKTIYKYENYSANPSVDIAIKIEEYLDAPLVR 181 Query: 79 --KLLKP 83 L +P Sbjct: 182 GIDLFEP 188 >gi|227878377|ref|ZP_03996331.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256843232|ref|ZP_05548720.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256850809|ref|ZP_05556202.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|312977464|ref|ZP_07789212.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] gi|227862027|gb|EEJ69592.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256614652|gb|EEU19853.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256712376|gb|EEU27404.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|310895895|gb|EFQ44961.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] Length = 121 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS +E K I+I + +A L+T + Sbjct: 7 LGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALNTTTPDI 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|218131512|ref|ZP_03460316.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM 20697] gi|317476468|ref|ZP_07935717.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|329956590|ref|ZP_08297163.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT 12056] gi|217986444|gb|EEC52781.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM 20697] gi|316907494|gb|EFV29199.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|328523962|gb|EGF51038.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT 12056] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +E+ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] Length = 65 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R+ LTQ+E+ G + I +E GK ++ +A + + Sbjct: 3 NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGAKIEDIF 60 >gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis audaxviator MP104C] Length = 83 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R A LTQ E+ R G +++ + +E G ++ + +A L+ + L Sbjct: 8 LRSVRLRAGLTQAELARRVGISRTAYTNIEKGHKHPSLVTALRIARVLNEHVEDLF 63 >gi|188587144|ref|YP_001918689.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351831|gb|ACB86101.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 116 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ+E+ +TG + I +E +I+ + LA L+ + LL Sbjct: 9 LAETVKFKRNENNLTQEELSEQTGINRVMIGRIEKQDFIPSINQLEKLADALEFEITDLL 68 >gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 33/67 (49%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +++ N + +RKE + Q+++ + +S ETG + +I ++ +A D Sbjct: 6 VEVDQVKIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNNMPDISILVDIADYYD 65 Query: 75 TPLWKLL 81 + +++ Sbjct: 66 ISIPEII 72 >gi|149204591|ref|ZP_01881557.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142090|gb|EDM30139.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 85 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 31/53 (58%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A L Q ++ +R QS ++ +E+G+ +++ +++LA + +++L Sbjct: 20 ARKSAGLGQDDLADRLKCHQSLVARIESGQRRVDVVELVVLARAIGFDPFEVL 72 >gi|148717848|ref|YP_001285320.1| CI-like repressor [Staphylococcus phage 80alpha] gi|103058634|gb|ABF71577.1| CI-like repressor [Staphylococcus phage 80alpha] Length = 238 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57 >gi|119443658|ref|YP_918896.1| cI-like repressor [Staphylococcus phage phiPVL108] gi|257425606|ref|ZP_05602030.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053] gi|257436507|ref|ZP_05612551.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876] gi|282914289|ref|ZP_06322075.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M899] gi|282924583|ref|ZP_06332251.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101] gi|293503366|ref|ZP_06667213.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|293510381|ref|ZP_06669087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] gi|293530920|ref|ZP_06671602.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M1015] gi|119225784|dbj|BAF41155.1| cI-like repressor [Staphylococcus phage phiPVL108] gi|257271300|gb|EEV03446.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053] gi|257283858|gb|EEV13981.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876] gi|282313418|gb|EFB43813.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101] gi|282321470|gb|EFB51795.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M899] gi|290920188|gb|EFD97254.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus M1015] gi|291095032|gb|EFE25297.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 58-424] gi|291466745|gb|EFF09265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M809] Length = 238 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57 >gi|150015772|ref|YP_001308026.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902237|gb|ABR33070.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 113 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R + LTQ E+ Q+ +S+ E+GK + + +A + + LL Sbjct: 4 FADRLKEERIQKNLTQTELAKTLYLGQTSVSKYESGKQIPEMPTLQKIADFFEISIDYLL 63 >gi|332359892|gb|EGJ37706.1| transcriptional regulator [Streptococcus sanguinis SK1056] Length = 116 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + L+ + Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMIPEEFF 70 >gi|332200001|gb|EGJ14075.1| transcriptional activator [Streptococcus pneumoniae GA47901] Length = 299 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|315651546|ref|ZP_07904566.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486201|gb|EFU76563.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 77 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKS-TINIDNMIILAHTLDTPLWKLL 81 N + IRKE K+TQ+E+ + + +IS +E GKS ++ +A L ++++ Sbjct: 3 NRIKEIRKEKKITQQELVDDLDITRQYISLIEKNGKSEPPSLKVANAIATKLGVCIYRVF 62 >gi|270292315|ref|ZP_06198526.1| putative transcriptional repressor [Streptococcus sp. M143] gi|270278294|gb|EFA24140.1| putative transcriptional repressor [Streptococcus sp. M143] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R E LTQ ++ G + I +E GK ++ + L L +L Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRRLGKTLDQLF 62 >gi|290959281|ref|YP_003490463.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260648807|emb|CBG71921.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 432 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E R R + +QK++ G+ QS +S LE+G+ T ++ + +A LD Sbjct: 8 QNEARRIGEVIRQARALQRRSQKDVAAALGYHQSKVSRLESGRGTEDVRTLREVAQVLDI 67 Query: 76 PLWKL 80 P +L Sbjct: 68 PPHRL 72 >gi|148998259|ref|ZP_01825728.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae SP11-BS70] gi|147755902|gb|EDK62946.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae SP11-BS70] gi|332203750|gb|EGJ17817.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 88 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 78 >gi|116255394|ref|YP_771227.1| putative DNA binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260042|emb|CAK03140.1| putative DNA binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 112 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 F R R E KLT +E+ +R G ++ + +E G I +A + L+ Sbjct: 20 FSQLIRRARIERKLTTQELADRAGISRGLLQRIEKGDPACAIGAFFEVAAIVGVRLF 76 >gi|111657670|ref|ZP_01408400.1| hypothetical protein SpneT_02001147 [Streptococcus pneumoniae TIGR4] gi|148983966|ref|ZP_01817285.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae SP3-BS71] gi|194398199|ref|YP_002037248.1| hypothetical protein SPG_0533 [Streptococcus pneumoniae G54] gi|147924113|gb|EDK75225.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae SP3-BS71] gi|194357866|gb|ACF56314.1| conserved hypothetical protein [Streptococcus pneumoniae G54] gi|301799637|emb|CBW32195.1| putative uncharacterized protein [Streptococcus pneumoniae OXC141] Length = 88 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 78 >gi|226946801|ref|YP_002801874.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] gi|226721728|gb|ACO80899.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] Length = 182 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++IRK L+Q+E+ R G S IS +E + +I ++ + + L + Sbjct: 3 VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLMEFF 62 >gi|302531744|ref|ZP_07284086.1| predicted protein [Streptomyces sp. AA4] gi|302440639|gb|EFL12455.1| predicted protein [Streptomyces sp. AA4] Length = 490 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80 R LTQ ++ G Q+++S++E+G + I+ ++ +A L+ +L Sbjct: 32 RNSRGLTQTDLAKLLGIHQTYLSKIESGHRKVFDIELILRIASQLELDPEEL 83 >gi|296269730|ref|YP_003652362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092517|gb|ADG88469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 409 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI-DNMIIL 69 + +A R I N R R+ + +E+ G ++SW+S +E G + ++ + Sbjct: 8 MPEASTDYRRI-GENIRRARRYRGKSLEELAGLIGRSKSWLSRVENGLIPLEKRIDIARI 66 Query: 70 AHTLDTPLWKLL 81 A L LL Sbjct: 67 ADALQVSTDDLL 78 >gi|291300333|ref|YP_003511611.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569553|gb|ADD42518.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 401 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLWK 79 F + R +LTQ E+ S++S+LE+ + ++D LDT L Sbjct: 19 FGKRLKYWRLTRQLTQAELARDLNLDGSYVSKLESSRRRPSLDIARQCDDLLDTGGELAD 78 Query: 80 LLK 82 LL Sbjct: 79 LLT 81 >gi|254419132|ref|ZP_05032856.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196185309|gb|EDX80285.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 478 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E++ R +R+ T + R G + S++S++ET + +I L Sbjct: 3 EKLFLGAKLRKLREARGWTLEACAERLGLSPSYLSQIETNQRPATARVLIALTRAFHI 60 >gi|160943854|ref|ZP_02091085.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|158445028|gb|EDP22031.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium prausnitzii M21/2] gi|295103055|emb|CBL00599.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 206 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ L+Q+E+ R G+ ++S I++LE G + + + LA L+T LL Sbjct: 7 RVRLRREQLGLSQEELARRMGYRSRSSITKLEKGINDLPQSKVEELAQALETTPAALL 64 >gi|160883113|ref|ZP_02064116.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483] gi|237718837|ref|ZP_04549318.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|260173280|ref|ZP_05759692.1| transcriptional regulator [Bacteroides sp. D2] gi|293371883|ref|ZP_06618287.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|315921554|ref|ZP_07917794.1| transcriptional regulator [Bacteroides sp. D2] gi|156111585|gb|EDO13330.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483] gi|229451969|gb|EEO57760.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292633129|gb|EFF51706.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|295085499|emb|CBK67022.1| transcriptional regulator [Bacteroides xylanisolvens XB1A] gi|313695429|gb|EFS32264.1| transcriptional regulator [Bacteroides sp. D2] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ ++ +E+ R+G A + +E ++ +I +A L L Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 206 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ LTQKE+ + G + ++ E G S + +A LD + +LL Sbjct: 4 GTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVSELL 63 >gi|312602253|ref|YP_004022098.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] gi|312169567|emb|CBW76579.1| Transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] Length = 320 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 2 PRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 P ++ L+ R+ + R +R +T+K + TG ++ ++ LE+G Sbjct: 19 PESPANDGSLAGRDPRDPFLTAMGERVRLLRARRGMTRKSLAAETGLSERHLANLESGVG 78 Query: 60 TINIDNMIILAHTLDTPLWKLL 81 ++ + +A L+ PL +++ Sbjct: 79 NASVLVLRQIALALNCPLAEVI 100 >gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407] Length = 211 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RKE K+ Q + G + IS+ E ++ N +N++ LA L LLK Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61 >gi|310657612|ref|YP_003935333.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308824390|emb|CBH20428.1| Transcriptional regulator [Clostridium sticklandii] Length = 144 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 MI + +R LTQKE+ ++G + + I E G + + +A L+ Sbjct: 1 MISGKKLKELRLIRNLTQKELAIKSGISDAAIRNYELGNRSPTKQQLDKIASALN 55 >gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 206 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ LTQKE+ + G + ++ E G S + +A LD + +LL Sbjct: 4 GTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVSELL 63 >gi|296139491|ref|YP_003646734.1| helix-turn-helix domain protein [Tsukamurella paurometabola DSM 20162] gi|296027625|gb|ADG78395.1| helix-turn-helix domain protein [Tsukamurella paurometabola DSM 20162] Length = 91 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R N R R T +++ + + ++SE+E G+ + + + + LD + Sbjct: 6 REAIGENLRKTRVRQSRTLRDVSSAAQVSLGYLSEVERGQKEASSELLAAICGALDVEVA 65 Query: 79 KLL 81 +L+ Sbjct: 66 ELV 68 >gi|294495785|ref|YP_003542278.1| XRE family transcriptional regulator [Methanohalophilus mahii DSM 5219] gi|292666784|gb|ADE36633.1| transcriptional regulator, XRE family [Methanohalophilus mahii DSM 5219] Length = 185 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R E LTQ + R G +Q I+ +E G + + + D Sbjct: 6 AQSIKQQRIELGLTQSGLAKRAGVSQPLIARIEAGDVDPRLSTLRKIFAAFD 57 >gi|289641241|ref|ZP_06473408.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509003|gb|EFD29935.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 298 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLT-QK----EIRNRTGFAQSWISELETGKST 60 R+ P + +R +L+ Q+ E+ +RTG +QS IS +ETG T Sbjct: 2 RNLPDDDASARTAGAQLGAELAVLRHRHRLSGQELSGQELASRTGMSQSKISRIETGTVT 61 Query: 61 INIDNMIILAHTLDTP 76 + D++ + LD P Sbjct: 62 PSPDDVEAIVRALDEP 77 >gi|260889935|ref|ZP_05901198.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260860541|gb|EEX75041.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 183 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F N + +R E +LTQK + ++ S IS+ E G + + + + + L Sbjct: 8 KKDFKNLLKKLRTEKRLTQKALADKINIPVSMISKYEQGTNKPSFSYLSKICRFFEVELD 67 Query: 79 KLL 81 L Sbjct: 68 YFL 70 >gi|229591188|ref|YP_002873307.1| putative DNA binding protein [Pseudomonas fluorescens SBW25] gi|229363054|emb|CAY50029.1| putative DNA binding protein [Pseudomonas fluorescens SBW25] Length = 208 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N + +R + L+ + G +++ ++++E+G+S +I + +A L + L Sbjct: 28 VAHNLQRLRSKRHLSLDGLARVCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSVAAFL 87 Query: 82 K 82 + Sbjct: 88 E 88 >gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] Length = 398 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+R+E +TQ+++ G ++ +S+ ETG+S +I + +A + LL Sbjct: 4 GATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQSCPDIQLLAPIARYFGVTIDALL 62 >gi|213691431|ref|YP_002322017.1| helix-turn-helix domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522892|gb|ACJ51639.1| helix-turn-helix domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457502|dbj|BAJ68123.1| hypothetical protein BLIJ_0529 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 401 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 15 ILRERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 L++R+ F R+ +TQKE+ R+G +Q+ +S+L+ G + N + + L+ L Sbjct: 10 ALKQRLAFNPERIALARRLEGVTQKELSTRSGLSQAKLSKLQNGIISFNESDAVKLSGAL 69 Query: 74 DTPL 77 D P+ Sbjct: 70 DYPI 73 >gi|212696475|ref|ZP_03304603.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM 7454] gi|212676568|gb|EEB36175.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM 7454] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRKE K+TQ+E+ + ++ I LE G+ +I +A + + Sbjct: 3 NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60 >gi|91789185|ref|YP_550137.1| transcriptional regulator [Polaromonas sp. JS666] gi|91698410|gb|ABE45239.1| transcriptional regulator, XRE family with cupin sensor domain [Polaromonas sp. JS666] Length = 201 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 40/74 (54%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 P DA ++ + R+ R A LT ++ ++ ++S IS++E+G+++ ++ + Sbjct: 11 AAPTPEDAAVKPPSMLGVRLRHARLVAGLTMTQVAQKSQCSESLISKIESGQASPSLAML 70 Query: 67 IILAHTLDTPLWKL 80 +A TLDT + L Sbjct: 71 HRIAVTLDTNIAAL 84 >gi|49479015|ref|YP_037453.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330571|gb|AAT61217.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ + G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRTKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|39997211|ref|NP_953162.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984101|gb|AAR35489.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] Length = 143 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 +RKR E + +FV +++ + L+ E+ +R A+S +++ G+ + Sbjct: 21 KRKRGEVVDA-------AVFVERLKSLMADKGLSSAELADRADLARSALTQFFGGERKPS 73 Query: 63 IDNMIILAHTLDTPLWKLL 81 D ++ LA+ LD+ LL Sbjct: 74 ADALVKLANVLDSSTDYLL 92 >gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans R1] gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans R1] Length = 64 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E LTQ ++ ++ ++ I+ LETGK ++ LA + + + Sbjct: 3 NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIFQ 61 >gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 167 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62 >gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505] gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505] Length = 103 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS--- 59 R R + + R L+Q+ + + G + + E G+S Sbjct: 15 RDSSSTSQDEQWWPIARQL-GLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPG 73 Query: 60 ---TINIDNMIILAHTLDTPLWKLL 81 + +I LA LD + +L+ Sbjct: 74 TPMNPRLRTLIALATALDMQVEELV 98 >gi|312870861|ref|ZP_07730966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872168|ref|ZP_07732241.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311092252|gb|EFQ50623.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093551|gb|EFQ51890.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] Length = 438 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK+ + Q E+ + G + S ISE E G T I + +A L Sbjct: 209 MFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDD 268 Query: 80 LL 81 L+ Sbjct: 269 LM 270 >gi|309803473|ref|ZP_07697567.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|325913387|ref|ZP_08175754.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164482|gb|EFO66735.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|325477313|gb|EGC80458.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 441 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK+ + Q E+ + G + S ISE E G T I + +A L Sbjct: 209 MFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDD 268 Query: 80 LL 81 L+ Sbjct: 269 LM 270 >gi|298480154|ref|ZP_06998353.1| DNA-binding protein [Bacteroides sp. D22] gi|298273963|gb|EFI15525.1| DNA-binding protein [Bacteroides sp. D22] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ ++ +E+ R+G A + +E ++ +I +A L L Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168] gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ + G +++ I ++E G+S+ + L+ + L+ Sbjct: 13 GVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLI 71 >gi|320010691|gb|ADW05541.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 264 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 28/54 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + F+ R A LTQ+E+ + +S I+ +E G+ + ++ L L+T Sbjct: 5 YGDWFKEQRVAAGLTQQELADAAVMTRSHIAHIEAGRRIPSKEDARRLDKALNT 58 >gi|227115336|ref|ZP_03828992.1| hypothetical protein PcarbP_20365 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 88 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 + R A LTQ+++ G A+S IS+ E+G + M A L+ P Sbjct: 5 RLKTARLRANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP 60 >gi|289805529|ref|ZP_06536158.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 107 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R + K++ E+ R+G ++ + E+E K+ +I + +A + + Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|222101988|ref|YP_002546578.1| hypothetical protein Arad_12032 [Agrobacterium radiobacter K84] gi|221728105|gb|ACM31114.1| hypothetical protein Arad_12032 [Agrobacterium radiobacter K84] Length = 83 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ LTQ ++ R G QS+++ LE+G+ +++ + LA L Sbjct: 25 REAKGLTQTDLAARLGEYQSFVARLESGQRRVDVIEFLELAEILG 69 >gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 101 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + ++ + RKE +T ++ + G +Q +S E G + I++ +++ +A LDTP+ Sbjct: 6 DHLLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASILDTPI 65 >gi|218297117|ref|ZP_03497788.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] gi|218242531|gb|EED09069.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23] Length = 214 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 13/84 (15%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-- 58 MPR R + + V RK LTQ+ + GF+ S ++++E G Sbjct: 1 MPRTPR------NPLPPR----VARLVERRKALGLTQEGLARLAGFSTSLMAKIERGAVD 50 Query: 59 -STINIDNMIILAHTLDTPLWKLL 81 +++ +++ LA L PL LL Sbjct: 51 LRSLSAQHVVGLAKALGLPLNALL 74 >gi|91206072|ref|YP_538427.1| hypothetical protein RBE_1257 [Rickettsia bellii RML369-C] gi|157826572|ref|YP_001495636.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] gi|91069616|gb|ABE05338.1| unknown [Rickettsia bellii RML369-C] gi|157801876|gb|ABV78599.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] Length = 186 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + R L+QKE+ + I + E G STI + + +LA L+TPL Sbjct: 33 KIASERLKQRRIAIGLSQKELGETLDISAIQIKKYEEGISTIPVSRLYVLAKILNTPLKH 92 Query: 80 LL 81 Sbjct: 93 FF 94 >gi|23450984|gb|AAN32624.1|AF373594_4 unknown [Thauera aromatica] Length = 303 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR +T+K + ++ ++ LE G+ ++I + ++ LD PL +LL Sbjct: 32 LGKRVREIRDRRGMTRKLVAREASVSERHLAHLEAGEGNVSIVLLRHISRALDVPLIELL 91 >gi|42520477|ref|NP_966392.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630365|ref|YP_002727156.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630759|ref|YP_002727550.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410216|gb|AAS14326.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592346|gb|ACN95365.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592740|gb|ACN95759.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 7 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 66 Query: 79 KLL 81 L+ Sbjct: 67 DLI 69 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G+ I ++ + +A TL + LL Sbjct: 164 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISITDLL 222 >gi|147671814|ref|YP_001215344.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|147673183|ref|YP_001217016.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|147673763|ref|YP_001217013.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|153824168|ref|ZP_01976835.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae B33] gi|229508578|ref|ZP_04398081.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae BX 330286] gi|254226669|ref|ZP_04920247.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|254226678|ref|ZP_04920256.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|262166856|ref|ZP_06034579.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|262166979|ref|ZP_06034698.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|298498461|ref|ZP_07008268.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio cholerae MAK 757] gi|11134457|sp|O85264|RSR2_VIBCH RecName: Full=Cryptic phage CTXphi transcriptional repressor rstR gi|6851391|gb|AAF29541.1|AF220606_1 RstR [Vibrio cholerae] gi|11559577|gb|AAG38011.1|AF262318_2 RstR classical [Vibrio phage CTX] gi|21637281|gb|AAM70434.1|AF510999_1 RstR [Vibrio phage CTX] gi|3252903|gb|AAC24223.1| repressor [Vibrio cholerae 569B] gi|34980245|gb|AAQ84035.1| RstR [Vibrio cholerae] gi|66268071|gb|AAY43122.1| RstR [Vibrio phage CTX] gi|125620783|gb|EAZ49139.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|125620792|gb|EAZ49148.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|126518308|gb|EAZ75533.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae B33] gi|146314197|gb|ABQ18737.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|146315066|gb|ABQ19605.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|146315646|gb|ABQ20185.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|221236971|gb|ACM16038.1| RstR [Vibrio phage CTX] gi|221236983|gb|ACM16045.1| RstR [Vibrio phage CTX] gi|221236998|gb|ACM16055.1| RstR [Vibrio phage CTX] gi|227013372|gb|ACP09582.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|227013375|gb|ACP09585.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|227015379|gb|ACP11588.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|229354532|gb|EEO19455.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae BX 330286] gi|258523312|gb|ACV73677.1| RstR [Vibrio phage CTX] gi|259046014|gb|ACV91462.1| RstR [Vibrio phage CTX] gi|259046023|gb|ACV91471.1| RstR [Vibrio phage CTX] gi|259046033|gb|ACV91480.1| RstR [Vibrio phage CTX] gi|259046042|gb|ACV91489.1| RstR [Vibrio phage CTX] gi|259046052|gb|ACV91498.1| RstR [Vibrio phage CTX] gi|259046061|gb|ACV91507.1| RstR [Vibrio phage CTX] gi|259046071|gb|ACV91516.1| RstR [Vibrio phage CTX] gi|259046080|gb|ACV91525.1| RstR [Vibrio phage CTX] gi|259046090|gb|ACV91534.1| RstR [Vibrio phage CTX] gi|259046099|gb|ACV91543.1| RstR [Vibrio phage CTX] gi|259046109|gb|ACV91552.1| RstR [Vibrio phage CTX] gi|259046118|gb|ACV91561.1| RstR [Vibrio phage CTX] gi|259130184|gb|ACV95535.1| RstR [Vibrio phage CTX] gi|259130202|gb|ACV95552.1| RstR [Vibrio phage CTX] gi|259130211|gb|ACV95561.1| RstR [Vibrio phage CTX] gi|259130221|gb|ACV95570.1| RstR [Vibrio phage CTX] gi|259130230|gb|ACV95579.1| RstR [Vibrio phage CTX] gi|259130246|gb|ACV95593.1| RstR [Vibrio phage CTX] gi|259130255|gb|ACV95602.1| RstR [Vibrio phage CTX] gi|262024620|gb|EEY43302.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|262024719|gb|EEY43397.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|297542794|gb|EFH78844.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio cholerae MAK 757] Length = 111 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + R++R E L Q+E+ N G ++ E G + ++ + LA P+ +L Sbjct: 1 MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|27377331|ref|NP_768860.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum USDA 110] gi|27350474|dbj|BAC47485.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum USDA 110] Length = 182 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR KL+Q+E+ R G S IS +E+ + ++ + + + L + Sbjct: 6 GGRLRFIRARQKLSQRELAKRAGVTNSTISLIESNQMNPSVGALKRILDGIPMGLAEFF 64 >gi|163939160|ref|YP_001644044.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861357|gb|ABY42416.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 71 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ L+Q+++ + G ++ I +E GK ++ +A T + + Sbjct: 3 NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIEHVF 60 >gi|77405440|ref|ZP_00782533.1| cI-like repressor [Streptococcus agalactiae H36B] gi|77175933|gb|EAO78709.1| cI-like repressor [Streptococcus agalactiae H36B] Length = 69 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ RK AKLTQ ++ + Q + +E G+ I +++ L + Sbjct: 5 EFVGEQIRHQRKLAKLTQSQLADLLETNQQTVGMMENGRRRTTIQDLVKLCKIFNASADD 64 Query: 80 LL 81 L Sbjct: 65 FL 66 >gi|15901010|ref|NP_345614.1| hypothetical protein SP_1144 [Streptococcus pneumoniae TIGR4] gi|111658183|ref|ZP_01408879.1| hypothetical protein SpneT_02000664 [Streptococcus pneumoniae TIGR4] gi|14972621|gb|AAK75254.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 29 RVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87 >gi|331269930|ref|YP_004396422.1| putative DNA-binding protein [Clostridium botulinum BKT015925] gi|329126480|gb|AEB76425.1| putative DNA-binding protein [Clostridium botulinum BKT015925] Length = 179 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 19 RMIFVNNFRNIRKEAK------LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 R + R TQ+ + +QS+I ++E+G++ + + +A Sbjct: 5 RKQLGQLLKKARSLKSEKIGKCYTQRMLAKDINRSQSYIGDIESGRTYTSFSILNEIAEA 64 Query: 73 LDTPLW 78 P++ Sbjct: 65 CGVPIY 70 >gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14] Length = 211 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R RKE K+ Q + G + IS+ E ++ N +N++ LA L LLK Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61 >gi|320528225|ref|ZP_08029389.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] gi|320131398|gb|EFW23964.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] Length = 86 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE KL+Q E+ + G + I+ +E GK T ++ +A + ++ Sbjct: 20 NRIKELRKEHKLSQGELADLVGTTRQTITSIEVGKYTASLPLAYKIAKQFSLSIEEVF 77 >gi|317123219|ref|YP_004097331.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] gi|315587307|gb|ADU46604.1| helix-turn-helix domain protein [Intrasporangium calvum DSM 43043] Length = 89 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-----IDNMIILAHTLD 74 R+ R+ + L+Q+ + R G ++ W+S LET + +D + L + Sbjct: 8 LGAALRDARRASGLSQEALAERAGVSRPWLSRLETAANPGAELRKVLDVLTALGLAVK 65 >gi|261251082|ref|ZP_05943656.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] gi|260937955|gb|EEX93943.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] Length = 188 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +N + +R + + + TG +++ + ++E G+S+ + + +A + Sbjct: 7 VGDNLKRLRSDKGWSLDKAAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVS 61 >gi|260912592|ref|ZP_05919122.1| xre family toxin-antitoxin system [Prevotella sp. oral taxon 472 str. F0295] gi|260633290|gb|EEX51450.1| xre family toxin-antitoxin system [Prevotella sp. oral taxon 472 str. F0295] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 5 KRDEPHLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 K E ER F + RKEAK+TQ E+ R +S+IS +E Sbjct: 7 KEIEREFGKPGTTEREKFDEEAYAFYTGQLLLDARKEAKVTQAELAKRIHATKSYISRVE 66 Query: 56 TGKSTINIDNMIILAHTLDTPLWKLLKP 83 +G + + + L + +++KP Sbjct: 67 SGDIIPSAAKFYNMINALGMRI-EIVKP 93 >gi|322418240|ref|YP_004197463.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320124627|gb|ADW12187.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 206 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 5 KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 KR R + R +R+E +LT + + + TG ++ +S++E + T I Sbjct: 3 KRGCHVQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPI 62 Query: 64 DNMIILAHTLDT 75 ++ +A L Sbjct: 63 ATLLKIAKGLKV 74 >gi|238782778|ref|ZP_04626808.1| hypothetical protein yberc0001_10690 [Yersinia bercovieri ATCC 43970] gi|238716438|gb|EEQ08420.1| hypothetical protein yberc0001_10690 [Yersinia bercovieri ATCC 43970] Length = 75 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 28/56 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +TQ+ + G QS+++++E G+ +++ + +A L + +L Sbjct: 16 LRKQRIAKGITQESLATALGRPQSFVAKVENGERRLDVVEFVHIARLLGLKVEDVL 71 >gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 125 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +RK KL+ +++ G Q+ +S E + + +I +A D L Sbjct: 7 MFGQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTEPDYKTLIRIAQFFDVSTDYL 66 Query: 81 L 81 + Sbjct: 67 I 67 >gi|262200558|ref|YP_003271766.1| hypothetical protein Gbro_0543 [Gordonia bronchialis DSM 43247] gi|262083905|gb|ACY19873.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 96 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +A LTQ ++ R+G ++S I+ E G+++++ D LA L L Sbjct: 24 AKALVTARHKAGLTQGQLAERSGLSRSAIARAEAGEASLSSDRFWDLAKALGIRPSAL 81 >gi|222838495|gb|EEE76860.1| predicted protein [Populus trichocarpa] Length = 555 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +++RK A ++Q ++ R G +QS ++ +E + I++ ++ + LD L L++P Sbjct: 15 LKSLRKAAGVSQAQLAQRLGVSQSRVAAIERDPAAISVRQLMEILQLLDADL--LMRP 70 >gi|198276651|ref|ZP_03209182.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] gi|198270176|gb|EDY94446.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] Length = 192 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R +++ +E+ R G +S +E ++ +I +A L L Sbjct: 6 IIGEKIKSLRTNQEISIQELAERAGLTVEQVSRIEENIDIPSLAPLIKIARALGVRL 62 >gi|167767579|ref|ZP_02439632.1| hypothetical protein CLOSS21_02098 [Clostridium sp. SS2/1] gi|167710871|gb|EDS21450.1| hypothetical protein CLOSS21_02098 [Clostridium sp. SS2/1] Length = 105 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW-----ISELETGKSTINIDNMIILAH 71 E+ + + + +RK+ ++QKE+ + + IS +E T+ + ++ Sbjct: 35 TEKNLIGHKVKQLRKKHHMSQKELSEKLETYAVYICRGSISRIEDQSRTVTDIELYAISK 94 Query: 72 TLDTPLWKLL 81 + +L Sbjct: 95 IFQISIEELF 104 >gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] Length = 216 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK +Q + G ++ ++ E+GK +++ LA + + Sbjct: 3 NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFDPSLEMAFKLAKLFKVSIEDVF 60 >gi|152982219|ref|YP_001352353.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282296|gb|ABR90706.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 198 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R A LT ++ + ++S IS++E G +T ++ + LA LD+ + L+ Sbjct: 23 LGVRLRHTRLVAGLTLIQLAKKAECSESLISKIERGSATPSLAMLHRLAVALDSNISSLM 82 >gi|159184446|ref|NP_353767.2| hypothetical protein Atu0743 [Agrobacterium tumefaciens str. C58] gi|159139759|gb|AAK86552.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 264 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R + R +L+Q ++ + +S +E+G+S+ + + + LA L P Sbjct: 5 REHVGQVLKEWRARRRLSQLDLAIEADISARHLSFVESGRSSPSREMLAKLAEQLSMP 62 >gi|54025848|ref|YP_120090.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54017356|dbj|BAD58726.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 280 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 A+ R R +R+ A L+ ++ R G+ S IS +E GK + ++ Sbjct: 2 RAVDDARAALGARLRELRRAAHLSGVDLAARCGWHSSKISRIERGKQAPSEADLADWCAA 61 Query: 73 LD 74 D Sbjct: 62 CD 63 >gi|145218938|ref|YP_001129647.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205102|gb|ABP36145.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 210 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R + L+Q+E+ R ++ ++++E+G + + A L TP+ Sbjct: 4 EQIGLRIKELRSQNGLSQEELARRVELPRTAVTKIESGSQELRFRELEKFAEALGTPISA 63 Query: 80 LLK 82 L++ Sbjct: 64 LVE 66 >gi|302876666|ref|YP_003845299.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307687341|ref|ZP_07629787.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302579523|gb|ADL53535.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 231 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R + L+QK++ + G A+++I+++E G+ I + L+ L L + Sbjct: 4 VGERLKETRIKQGLSQKQLAKKIGAAENFINDIELGRKVIPEAIIDKLSKALGENLNDM 62 >gi|242240629|ref|YP_002988810.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132686|gb|ACS86988.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 93 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 +N R A LTQ+++ G A S +S+ E+G T + + AH L+ P Sbjct: 4 ERLKNARLRANLTQEQLGVLAGIGEETAYSRLSQYESGTHTPSFKTVCAFAHALNVP 60 >gi|238923480|ref|YP_002936996.1| hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656] gi|238875155|gb|ACR74862.1| Hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + TQ + + S+++ +E+GK N+D +I +A D L L+ Sbjct: 11 LGERIRKLRFKRNKTQSYFADMLYISPSYLALIESGKRVPNLDLLIHIAKFTDVTLDYLV 70 >gi|228962984|ref|ZP_04124195.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796705|gb|EEM44103.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + +R +++K++ N ++ E+G N D +I +A+ + L+ Sbjct: 4 FGQNLKKLRGMRGMSRKDLANELDIPYVTLTTWESGSRIPNSDKLIPIANFFGVSVSDLV 63 Query: 82 K 82 + Sbjct: 64 E 64 >gi|257791669|ref|YP_003182275.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487865|ref|ZP_07946457.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA] gi|325830628|ref|ZP_08164049.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475566|gb|ACV55886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912991|gb|EFV34508.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA] gi|325487374|gb|EGC89816.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 L E I + RK +TQKE+ + G +Q IS+LE G +ID M + Sbjct: 28 LVEAKIKGYELQQARKACGMTQKEVAAKMGVSQKRISDLENG----SIDVMQV 76 >gi|218659215|ref|ZP_03515145.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] Length = 122 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R +R +++Q E+ G I + E G + ++ + +A LD + L Sbjct: 8 IVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISVL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|166032344|ref|ZP_02235173.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC 27755] gi|166028067|gb|EDR46824.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC 27755] Length = 116 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R+E LTQ E+ + +IS +E ++ +++ +I A ++T L L+ Sbjct: 18 LGSRVKKLRQEMNLTQAEVADALHVTPGYISNVENNRTAMSLRILIYYAKLMNTTLDSLV 77 >gi|153931108|ref|YP_001385235.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152927152|gb|ABS32652.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] Length = 78 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG---KSTINIDNMIILAHTLDT 75 + R+ + Q+++ +R G Q ++S+LE K +N+D + LA L+ Sbjct: 2 IKIFREHKGIRQEDLASRLGITQPYLSKLENNSIYKINVNVDLIESLAIELNI 54 >gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] Length = 269 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M N +++R + K TQ+ + N G +S IS E G++ + M +A + L Sbjct: 1 MFLSKNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAEPKLVVMNRIAQYFNITLD 60 Query: 79 KLL 81 +LL Sbjct: 61 QLL 63 >gi|325510651|gb|ADZ22287.1| transcriptional regulator, lacI/xre family [Clostridium acetobutylicum EA 2018] Length = 222 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + IR++AKL+QK+ + G A+ +I+E+E G+ + + + Sbjct: 5 GEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVVTESLIHRIKKLYGK 57 >gi|313765193|gb|EFS36557.1| cupin domain protein [Propionibacterium acnes HL013PA1] gi|313808625|gb|EFS47085.1| cupin domain protein [Propionibacterium acnes HL087PA2] gi|313810662|gb|EFS48376.1| cupin domain protein [Propionibacterium acnes HL083PA1] gi|313817084|gb|EFS54798.1| cupin domain protein [Propionibacterium acnes HL059PA1] gi|313819134|gb|EFS56848.1| cupin domain protein [Propionibacterium acnes HL046PA2] gi|313821151|gb|EFS58865.1| cupin domain protein [Propionibacterium acnes HL036PA1] gi|313823828|gb|EFS61542.1| cupin domain protein [Propionibacterium acnes HL036PA2] gi|313826931|gb|EFS64645.1| cupin domain protein [Propionibacterium acnes HL063PA1] gi|314916804|gb|EFS80635.1| cupin domain protein [Propionibacterium acnes HL005PA4] gi|314919076|gb|EFS82907.1| cupin domain protein [Propionibacterium acnes HL050PA1] gi|314921083|gb|EFS84914.1| cupin domain protein [Propionibacterium acnes HL050PA3] gi|314926168|gb|EFS89999.1| cupin domain protein [Propionibacterium acnes HL036PA3] gi|314931347|gb|EFS95178.1| cupin domain protein [Propionibacterium acnes HL067PA1] gi|314956204|gb|EFT00576.1| cupin domain protein [Propionibacterium acnes HL027PA1] gi|314958699|gb|EFT02801.1| cupin domain protein [Propionibacterium acnes HL002PA1] gi|314961006|gb|EFT05107.1| cupin domain protein [Propionibacterium acnes HL002PA2] gi|314968831|gb|EFT12929.1| cupin domain protein [Propionibacterium acnes HL037PA1] gi|314979037|gb|EFT23131.1| cupin domain protein [Propionibacterium acnes HL072PA2] gi|314985986|gb|EFT30078.1| cupin domain protein [Propionibacterium acnes HL005PA2] gi|314989291|gb|EFT33382.1| cupin domain protein [Propionibacterium acnes HL005PA3] gi|315081381|gb|EFT53357.1| cupin domain protein [Propionibacterium acnes HL078PA1] gi|315084978|gb|EFT56954.1| cupin domain protein [Propionibacterium acnes HL027PA2] gi|315087509|gb|EFT59485.1| cupin domain protein [Propionibacterium acnes HL002PA3] gi|315089583|gb|EFT61559.1| cupin domain protein [Propionibacterium acnes HL072PA1] gi|315100018|gb|EFT71994.1| cupin domain protein [Propionibacterium acnes HL059PA2] gi|315102821|gb|EFT74797.1| cupin domain protein [Propionibacterium acnes HL046PA1] gi|315110582|gb|EFT82558.1| cupin domain protein [Propionibacterium acnes HL030PA2] gi|327325873|gb|EGE67664.1| putative Helix-turn-helix domain protein [Propionibacterium acnes HL096PA3] gi|327450333|gb|EGE96987.1| cupin domain protein [Propionibacterium acnes HL013PA2] gi|327455491|gb|EGF02146.1| cupin domain protein [Propionibacterium acnes HL087PA3] gi|327457632|gb|EGF04287.1| cupin domain protein [Propionibacterium acnes HL083PA2] gi|328756848|gb|EGF70464.1| cupin domain protein [Propionibacterium acnes HL087PA1] gi|328757733|gb|EGF71349.1| cupin domain protein [Propionibacterium acnes HL020PA1] gi|328759497|gb|EGF73113.1| cupin domain protein [Propionibacterium acnes HL025PA2] Length = 194 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + T ++ + G ++ + +E G + ++ L+ L L L++ Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72 Query: 83 P 83 P Sbjct: 73 P 73 >gi|313204957|ref|YP_004043614.1| transcriptional regulator [Paludibacter propionicigenes WB4] gi|312444273|gb|ADQ80629.1| transcriptional regulator [Paludibacter propionicigenes WB4] Length = 190 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++I + + ++++E+ R+G + I +E + ++ +I +A L L Sbjct: 2 KKIIVGEKISTLCADKNISKEELAERSGLTVAQIEFIENSDTVPSLSPLIKIARALGVRL 61 >gi|299144678|ref|ZP_07037746.1| DNA-binding protein [Bacteroides sp. 3_1_23] gi|298515169|gb|EFI39050.1| DNA-binding protein [Bacteroides sp. 3_1_23] Length = 191 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I + +R++ ++ +E+ R+G A + +E ++ +I +A L L Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRL 62 >gi|293568994|ref|ZP_06680307.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291588427|gb|EFF20262.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] Length = 308 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 NN + R +LTQ+++ + +Q+ I + E G +I+ N IL+ L + Sbjct: 12 GNNLKEARLSKQLTQEKLARLSNISQATIVKYENGLRSISKKNDRILSDVLGAESF 67 >gi|258538334|ref|YP_003172833.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257150010|emb|CAR88982.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + IR +TQ ++ + ++ +S E ++ +++ + +A L L+ Sbjct: 3 FSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTLI 62 >gi|238761698|ref|ZP_04622673.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC 33638] gi|238700212|gb|EEP92954.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC 33638] Length = 196 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R +T K++ + G ++S +S+LE ++ ++ + LA L+T + L+ Sbjct: 15 LGMRLRHARLAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74 >gi|262194363|ref|YP_003265572.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077710|gb|ACY13679.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R+ RK LTQ++ R + + +E G + ++ + LA Sbjct: 10 GNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGVAIPSVSMLRRLAVAFG 61 >gi|226328955|ref|ZP_03804473.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] gi|225202141|gb|EEG84495.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] Length = 125 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L I I + R R++ +L+ K + R G +Q S E G I++D + +A Sbjct: 30 LMSKIYPISQIIGHKIRKQRQQLRLSAKVVAERVGISQQQFSRYENGLCKIDVDMLFHIA 89 Query: 71 HTLDTPLWKLLKP 83 L L P Sbjct: 90 QELKVTPAFFLPP 102 >gi|254502131|ref|ZP_05114282.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222438202|gb|EEE44881.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 484 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 29/65 (44%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 +L++ + + R +R + L+Q E + G + +I+++E + ++ + Sbjct: 3 KRVLQKNLYSGHTLRQVRADTGLSQVEFAKKLGLSTPYINQIENNNRPVTASVLLAIYRV 62 Query: 73 LDTPL 77 T L Sbjct: 63 FGTDL 67 >gi|224475959|ref|YP_002633565.1| putative repressor, phage associated [Staphylococcus carnosus subsp. carnosus TM300] gi|222420566|emb|CAL27380.1| putative repressor, phage associated [Staphylococcus carnosus subsp. carnosus TM300] Length = 107 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +R++ L Q ++ ++ G + S ISE E GK T + + LA + + + Sbjct: 1 MFSRNLKYLRQKNGLEQIDLAHKLGRKSASSISEWEKGKYTPKMSTLNKLAEIFNVSIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LM 62 >gi|254391747|ref|ZP_05006943.1| helix-turn-helix domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294813594|ref|ZP_06772237.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326441998|ref|ZP_08216732.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197705430|gb|EDY51242.1| helix-turn-helix domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294326193|gb|EFG07836.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 276 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + R+R F R +R E TQ E+ R G + S +S +ETG+ Sbjct: 9 PERSPRDR--FGQVVRALRDERGWTQDELAERLGCSGSHVSAIETGRRATT 57 >gi|192291420|ref|YP_001992025.1| phage repressor [Rhodopseudomonas palustris TIE-1] gi|192285169|gb|ACF01550.1| putative phage repressor [Rhodopseudomonas palustris TIE-1] Length = 264 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R R++ +QK++ +R G +Q I ++E G ST+ ++ +A L L L Sbjct: 33 GNIIRQAREQKGWSQKDLADRVGISQPAIRKIE-GGSTVKSKHLPKIAQVLGLDLQHL 89 >gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N] gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N] Length = 111 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPL 77 F + R R TQKE+ +G S I E+G+ + M+ LA L Sbjct: 4 FSDRLRTARNTRGWTQKELAELSGLTPSAIGNYESGQRAQASASAMLKLAEVLGVSP 60 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R E L+Q+E+ R + I E+GK+ +N++N+ ++A L P Sbjct: 13 GAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVP 66 >gi|16077549|ref|NP_388363.1| phage element (ICEBs1)transcriptional regulator (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|221308307|ref|ZP_03590154.1| hypothetical protein Bsubs1_02728 [Bacillus subtilis subsp. subtilis str. 168] gi|221312629|ref|ZP_03594434.1| hypothetical protein BsubsN3_02704 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317552|ref|ZP_03598846.1| hypothetical protein BsubsJ_02663 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321828|ref|ZP_03603122.1| hypothetical protein BsubsS_02734 [Bacillus subtilis subsp. subtilis str. SMY] gi|38503281|sp|P96631|IMMR_BACSU RecName: Full=HTH-type transcriptional regulator immR gi|1881293|dbj|BAA19320.1| ydcN [Bacillus subtilis] gi|2632782|emb|CAB12289.1| phage element (ICEBs1)transcriptional regulator (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|291482893|dbj|BAI83968.1| hypothetical protein BSNT_00832 [Bacillus subtilis subsp. natto BEST195] Length = 127 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R++A TQKE + + +S E + D ++ L++ + Sbjct: 1 MSLGKRLKEARQKAGYTQKEAAEKLNIGNNNLSNYERDYRDPDTDTLLKLSNLYNVSTDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|58699199|ref|ZP_00374010.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534286|gb|EAL58474.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 119 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R E TQK++ + G I + E G I+I+ + + L + L+ Sbjct: 13 VGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72 >gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 122 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ TQ+E+ G ++ +S E + + + + LA D + L+ Sbjct: 3 YGVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLI 62 >gi|309799894|ref|ZP_07694099.1| helix-turn-helix domain protein [Streptococcus infantis SK1302] gi|308116484|gb|EFO53955.1| helix-turn-helix domain protein [Streptococcus infantis SK1302] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R+E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 29 RVAIMSELIEARREQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87 >gi|306828548|ref|ZP_07461743.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304429347|gb|EFM32432.1| transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 99 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 36/80 (45%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 ++K+ + +E+ + N + +R L Q E+ G ++ IS LE + T + Sbjct: 14 KKKKMCYNEIKLREKEKGMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTPS 73 Query: 63 IDNMIILAHTLDTPLWKLLK 82 + + ++ + P+ + + Sbjct: 74 VVIALKISQIFNEPVESVFR 93 >gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R RK +TQ ++ G + + E+G + + + ++ L + Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNA 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|291008845|ref|ZP_06566818.1| SARP family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 525 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P+++R R +R A LT + + R +QS IS++E G+ Sbjct: 237 VPQQRRSADDQPAVPSGAPSGVAAELRRLRIAAGLTGERLSARARMSQSKISKIENGRQP 296 Query: 61 INIDNMIILAHTLDTPL 77 + ++ L LD Sbjct: 297 ASPGDVERLLLALDASP 313 >gi|288928565|ref|ZP_06422412.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 317 str. F0108] gi|288331399|gb|EFC69983.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 317 str. F0108] Length = 103 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query: 5 KRDEPHLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55 K E ER F + RKEAK+TQ E+ R ++S+IS +E Sbjct: 13 KEIEREFGKPGTTEREKFDEEAYAFYTGQLLLDARKEAKVTQAELAKRIHASKSYISRVE 72 Query: 56 TGKSTINIDNMIILAHTLDTPLWKLLKP 83 +G + + + L + +++KP Sbjct: 73 SGDIIPSAAKFYNMINALGMRI-EIVKP 99 >gi|262371032|ref|ZP_06064355.1| helix-turn-helix protein [Acinetobacter johnsonii SH046] gi|262374562|ref|ZP_06067836.1| helix-turn-helix protein [Acinetobacter junii SH205] gi|262310558|gb|EEY91648.1| helix-turn-helix protein [Acinetobacter junii SH205] gi|262314108|gb|EEY95152.1| helix-turn-helix protein [Acinetobacter johnsonii SH046] Length = 100 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD--TPLWKLL 81 R R ++TQ ++ R G + + +S LE G ++ +N++ +A L L +L Sbjct: 17 ERLRKERLYLEMTQADVATRAGVSVNTVSNLEAG-RNVSFENLVRVAMVLGRLKELEELF 75 Query: 82 KP 83 KP Sbjct: 76 KP 77 >gi|254559712|ref|YP_003066807.1| transcriptional repressor [Methylobacterium extorquens DM4] gi|254266990|emb|CAX22790.1| putative transcriptional repressor [Methylobacterium extorquens DM4] Length = 70 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 25/47 (53%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R++A +TQ ++ R G QS +S +E G I++ ++ A + Sbjct: 9 EARRKAGITQTDLAARLGLVQSVVSLIERGGRRIDLVELMEFADAVG 55 >gi|163856916|ref|YP_001631214.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163260644|emb|CAP42946.1| predicted transcriptional regulator [Bordetella petrii] Length = 175 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ KLT ++ +TG + ++S LE G+ ++ ++ +A L T L LL Sbjct: 1 MRATRRRRKLTLAQLSAQTGLDKGFLSRLERGEKFASVGSLHTVAVALGTTLSALL 56 >gi|163740106|ref|ZP_02147508.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] gi|163743413|ref|ZP_02150792.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161383243|gb|EDQ07633.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161386600|gb|EDQ10967.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] Length = 203 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 2 PRRKRD-EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P D P A + R+ RK+ LT +E +S +S++E ++ Sbjct: 3 PINPEDGAPVTEVAEAPDGDALGKMIRDSRKDKGLTLEEAAKAANIGRSTLSKIENNQTR 62 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + + L TLD +L Sbjct: 63 PSFEIIRRLMQTLDLQTPQLF 83 >gi|86739844|ref|YP_480244.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566706|gb|ABD10515.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 282 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTP 76 R F+ R+ TQ +I G QS +S++ G+ + +++ +A + P Sbjct: 26 ARRDIGTVFKIYRQWTGATQTQIAAVCGLPQSHVSDIMNGRRQVTSLEIFERIADGIGIP 85 >gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ + +Q E+ R G ++ I+ LETGK ++ +A + + Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|15669353|ref|NP_248158.1| hypothetical protein MJ_1164 [Methanocaldococcus jannaschii DSM 2661] gi|24418741|sp|Q58564|Y1164_METJA RecName: Full=Putative HTH-type transcriptional regulatory protein MJ1164 gi|1591790|gb|AAB99166.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 318 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I + +R+ ++ ++ G ++ I + ET + ++D + + LD PL K Sbjct: 125 KIDGKVLKEVREAMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVALKIEEFLDVPLVK 184 Query: 80 ---LLKP 83 L +P Sbjct: 185 GIDLFEP 191 >gi|150389955|ref|YP_001320004.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949817|gb|ABR48345.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 155 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLW 78 N RN RKE LT E + +S +E G + + + + ++L L Sbjct: 6 KTLGKNIRNYRKEKNLTSVEFAKHINISTGQLSNVENGNHEVFRLGLLDRITNSLGVSLG 65 Query: 79 KLLK 82 +LL+ Sbjct: 66 ELLQ 69 >gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%) Query: 1 MPRRKRDEPHLS-DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 M R P + DA+L R R+ LTQ ++ Q +S E G Sbjct: 1 MTTRPSSPPDDAQDALLAAR--VGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTR 58 Query: 60 TINIDNMIILAHTLDTPLWKLLK 82 + + L+ L+ + +LL+ Sbjct: 59 VPTLHRLQQLSDALNCSVDQLLQ 81 >gi|332288631|ref|YP_004419483.1| hypothetical protein UMN179_00550 [Gallibacterium anatis UMN179] gi|330431527|gb|AEC16586.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 129 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ +Q+E+ + + S +++E G++ +++D + +A D + +LL Sbjct: 5 EKIRLIREMNHWSQEEMAEKMNLSPSGYAKIERGETRLHLDKLEKIAQIFDVDISELL 62 >gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14] gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14] Length = 482 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R ++ R +R+E + Q E+ G + S+ +++E + + ++ +A Sbjct: 7 DRKVYAHAKLRRLRREHGMNQVEMARALGISTSYANQIEQSRRPLTATVLLRIAEVFGVD 66 Query: 77 L 77 Sbjct: 67 P 67 >gi|291551194|emb|CBL27456.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 170 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 34/73 (46%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 ++ I +++ RK+ LTQ+++ + G + IS+ ETGK + + Sbjct: 9 HQMNGGIHMNQLVTGKFIALKRKQKNLTQEQLAEKLGVSNKTISKWETGKCMPDYSIVKS 68 Query: 69 LAHTLDTPLWKLL 81 L L+ + +L+ Sbjct: 69 LCEELEVTVAELM 81 >gi|288559490|ref|YP_003422976.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288542200|gb|ADC46084.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 80 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +R+E K++Q+++ G + I+ LE G+ ++ + L+ + Sbjct: 5 IRYLRQEVKMSQQDLAKSAGVTRQTINALENGRYNPSLLLAYNITRILNKATY 57 >gi|220908478|ref|YP_002483789.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865089|gb|ACL45428.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 158 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78 R IR L+QKE+ ++ G + ++E G +T +N LA+ L P+ Sbjct: 14 ETLAQYIRRIRLSLGLSQKEVADKAGIHLQSLGKIERGHTTRLNQKPKRGLAYALGLPIE 73 Query: 79 KL 80 L Sbjct: 74 YL 75 >gi|148993148|ref|ZP_01822714.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|168489995|ref|ZP_02714194.1| transcriptional activator [Streptococcus pneumoniae SP195] gi|147928122|gb|EDK79140.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|183571596|gb|EDT92124.1| transcriptional activator [Streptococcus pneumoniae SP195] gi|332072071|gb|EGI82558.1| transcriptional activator [Streptococcus pneumoniae GA17570] Length = 299 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|160895525|ref|YP_001561107.1| anaerobic benzoate catabolism transcriptional regulator [Delftia acidovorans SPH-1] gi|160361109|gb|ABX32722.1| transcriptional regulator, XRE family with shikimate kinase activity [Delftia acidovorans SPH-1] Length = 304 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R +T++ + ++ ++ LE G +++ + +A L + +LL Sbjct: 29 LGERVRSLRSRRGMTRRALAAAADVSERHLANLEYGTGNVSVLVLHHIAQALQCSMAELL 88 >gi|16126315|ref|NP_420879.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235094|ref|YP_002517530.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13423557|gb|AAK24047.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964266|gb|ACL95622.1| transcriptional regulator [Caulobacter crescentus NA1000] Length = 115 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + R+ A LTQ E+ +TG +++S++E G + I+ + A +L Sbjct: 18 RREAGRWLKAAREAAGLTQAELAEKTGLRYYTFVSQVENGLGRVPIEAQAVWAQSLGLDP 77 Query: 78 WKLLK 82 + + Sbjct: 78 TQFAR 82 >gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F R +R + +Q+E + G ++ I+ E+G++T + +A +T Sbjct: 20 KEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTD 79 Query: 79 KLL 81 LL Sbjct: 80 YLL 82 >gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 73 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N R +R E +TQ+ + + G + I LE G+ +++ +A + + Sbjct: 8 VANEIRRLRFERGEMTQQALADACGVTRQTIIALEAGRYAPSLELAFRIARAFGVGVEDV 67 Query: 81 L 81 Sbjct: 68 F 68 >gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321] gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321] Length = 228 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RKE KLTQ+EI + G + S E G + + ++ L + L P Sbjct: 5 EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVP 57 >gi|302542945|ref|ZP_07295287.1| putative helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302460563|gb|EFL23656.1| putative helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 142 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + ++ R +R+E LTQ++ + G Q+ +S+LE GK+ +++ M A L L Sbjct: 70 EAHLLGHHLRQLRRERGLTQQQAAAQLGITQARVSQLEQGKA-VDLAAMRAYAQALGARL 128 >gi|296506515|ref|YP_003667749.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|296327102|gb|ADH10029.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++Q+++ N G + I LE GK + +A L P+ L Sbjct: 6 RMKEYRVKLSMSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 62 >gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] Length = 161 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ + + Q +S E G + +ID + +++ + P+ K Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAK 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|294810942|ref|ZP_06769585.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326439425|ref|ZP_08214159.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294323541|gb|EFG05184.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 446 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R E LTQ+++ + + ++IS LE+GK + + LA L T +L Sbjct: 8 GRRVQRLRTERGLTQRQLAEPS-YTPAYISTLESGKVRPSETALRFLAGRLGTSYEEL 64 >gi|270261480|ref|ZP_06189753.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044964|gb|EFA18055.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 21/55 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 IR++ L+Q+ +G S IS +E K + I + L L Sbjct: 9 GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSL 63 >gi|269468586|gb|EEZ80235.1| hypothetical protein Sup05_0706 [uncultured SUP05 cluster bacterium] Length = 131 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK---STINIDNMIILAHTLDTP 76 + R+ L+QKE+ ++ G + S IS+ E+ S ++ N+I L L+ Sbjct: 2 KSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYESTSYFHSEPSVKNLIKLTKVLNVS 61 Query: 77 LWKL 80 L Sbjct: 62 FEWL 65 >gi|289578605|ref|YP_003477232.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528318|gb|ADD02670.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 76 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRK +T E+ + G + S I +E G ++ +A TL L ++ Sbjct: 3 NKLKEIRKSLNMTGVELAKKVGVSHSLIYMIEGGYRNPSMKLAKKIAKTLGKSLDEIF 60 >gi|212711630|ref|ZP_03319758.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] gi|212685732|gb|EEB45260.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 22/58 (37%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ ++ K++ G +Q +S E G I++D + + Sbjct: 7 KAVGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIFSVDP 64 >gi|167755728|ref|ZP_02427855.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402] gi|167704667|gb|EDS19246.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402] Length = 145 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N +RK + TQ+EI + G ++ +++ E+G+S +ID+ + LA + + Sbjct: 2 KNMLSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTID 61 Query: 79 KLL 81 L+ Sbjct: 62 NLI 64 >gi|164517198|emb|CAP48673.1| putative integron gene cassette protein [uncultured bacterium] Length = 115 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%) Query: 2 PRRKRDEPHLSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 PR ++ R+R+ + R R+ +L+Q ++ TG QS IS +E + Sbjct: 22 PRLSKEVIMSDYRRARKRIEVTVGESVRIFRELQELSQNQLSEITGIPQSTISAIERDRV 81 Query: 60 TINIDNMIILAHTLDTPLWKLLKP 83 + ++ +LA L L+ P Sbjct: 82 NLGVERAKVLARALKVHPAVLVFP 105 >gi|42782413|ref|NP_979660.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738338|gb|AAS42268.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALQSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|107101758|ref|ZP_01365676.1| hypothetical protein PaerPA_01002802 [Pseudomonas aeruginosa PACS2] gi|296389278|ref|ZP_06878753.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110791|ref|ZP_07796645.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa 39016] gi|310883147|gb|EFQ41741.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa 39016] Length = 210 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 D ++ +R +N +R + L+ + +G +++ ++++E+G+S +I + Sbjct: 19 HTEPDDLIGQR--VAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 76 Query: 69 LAHTLDTPLWKLL 81 +A L + L Sbjct: 77 IAQGLKVSVAAFL 89 >gi|319788682|ref|YP_004148157.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317467194|gb|ADV28926.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 65 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ R +R E +Q E+ R ++ ++ LETGK ++ +A + + P Sbjct: 3 NHLRALRDEHGWSQGELAERLEVSRQTVNALETGKYDPSLPLAFRIARLFGRSIEDVFVP 62 >gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] Length = 192 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ + ++ +G +++ I ++E G+S+ + L+ D + +LL Sbjct: 17 GLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLSGAFDMSMSQLL 75 >gi|295132582|ref|YP_003583258.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294980597|gb|ADF51062.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 102 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 23/46 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + R++ LTQ+++ G +S+IS+LE I + + + Sbjct: 43 IQQAREDKGLTQEQLAELAGTNKSYISKLERNLKDIRFSTLQRIIN 88 >gi|258454473|ref|ZP_05702440.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937] gi|257863330|gb|EEV86091.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937] Length = 238 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57 >gi|256397770|ref|YP_003119334.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363996|gb|ACU77493.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 288 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Query: 1 MPRRKRDEPHLSD-AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 MP+ R +S+ + F R R +++Q E+ NR G Q +S +E G+S Sbjct: 1 MPKTSRVSTAISEISSKPPSPAFGAELRRWRTLRRVSQLELANRAGTTQRHLSFMEQGRS 60 Query: 60 TINIDNMIILAHTLDTPLWK 79 ++ LA +L L + Sbjct: 61 HPGRAIVLRLAESLRLTLRE 80 >gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 165 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +RKE LTQ ++ R + S I+ ET + + + +A L + ++ Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMTQI 68 >gi|213019902|ref|ZP_03335694.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994511|gb|EEB55167.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 243 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R TQK++ + + IS E G+ I ++ + +A TL + LL+ Sbjct: 102 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 161 >gi|254392695|ref|ZP_05007869.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|197706356|gb|EDY52168.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 446 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R E LTQ+++ + + ++IS LE+GK + + LA L T +L Sbjct: 8 GRRVQRLRTERGLTQRQLAEPS-YTPAYISTLESGKVRPSETALRFLAGRLGTSYEEL 64 >gi|145632823|ref|ZP_01788556.1| putative cro repressor [Haemophilus influenzae 3655] gi|145635977|ref|ZP_01791660.1| putative cro repressor [Haemophilus influenzae PittAA] gi|229844114|ref|ZP_04464255.1| putative cro repressor [Haemophilus influenzae 6P18H1] gi|144986479|gb|EDJ93045.1| putative cro repressor [Haemophilus influenzae 3655] gi|145266764|gb|EDK06785.1| putative cro repressor [Haemophilus influenzae PittAA] gi|229813108|gb|EEP48796.1| putative cro repressor [Haemophilus influenzae 6P18H1] Length = 68 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 NN IR + +TQ+++ N G++Q I+ ETG + ++ + L+T Sbjct: 2 NNLSQIRGQLGITQRQLANHIGWSQPRIANYETGLRSPSLSVAQKIVQALNT 53 >gi|159045315|ref|YP_001534109.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913075|gb|ABV94508.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ R +TQ+++ ++ G I + ETG + ++ + +A +L P Sbjct: 9 VGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSLGVP 63 >gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217] gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217] Length = 229 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + RKE LTQ I G ++ IS E+G ++ +N+ LA L L Sbjct: 1 MMNERIKQRRKELGLTQPSIAKTIGLTKATISLWESGSTSPKGENLHALAKALRCAPEFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|57237282|ref|YP_178295.1| transcriptional regulator, putative [Campylobacter jejuni RM1221] gi|57166086|gb|AAW34865.1| transcriptional regulator, putative [Campylobacter jejuni RM1221] Length = 210 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAH 71 + N+F+ IR++ LTQ+++ N+ + I +E GK+ I+ DN+ L+ Sbjct: 1 MTANDFKQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKKYFDNISKLSK 54 >gi|154244507|ref|YP_001415465.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158592|gb|ABS65808.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 117 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF ++ R+ +Q+++ R G S I+ ETG+ + D++ LA+ L+ L Sbjct: 10 IFRERLKSARELRGYSQEQLGARAGMPASSIAHFETGRK-PSFDSLRRLANALEITTDYL 68 Query: 81 L 81 L Sbjct: 69 L 69 >gi|84685009|ref|ZP_01012908.1| regulator of anaerobic catobolism of benzoate BzdR [Maritimibacter alkaliphilus HTCC2654] gi|84666741|gb|EAQ13212.1| regulator of anaerobic catobolism of benzoate BzdR [Rhodobacterales bacterium HTCC2654] Length = 302 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R + ++ + ++G + ++++LE G+ I+I + +AH LD Sbjct: 29 VGERVRAARDRKGIPRRVLSEKSGVSPRYLAQLEAGEGNISIGLLQKVAHALD 81 >gi|134296885|ref|YP_001120620.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140042|gb|ABO55785.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 230 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 HVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|326391550|ref|ZP_08213082.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992431|gb|EGD50891.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 427 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +R + L+Q E+ ++ +S +E GK+ +++ + LA L+ P Sbjct: 6 GDKIKALRLQKNLSQSELCGNF-MSRVVLSRIENGKALPSLEQLAYLAEKLEVP 58 >gi|323466439|gb|ADX70126.1| XRE family transcriptional regulator [Lactobacillus helveticus H10] Length = 117 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS LE K I+I + +A L+T + Sbjct: 5 LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTNTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|317499138|ref|ZP_07957415.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893551|gb|EFV15756.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 98 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +RK+A TQ++I + ++IS +E + +N+ + A L+ + LL+P Sbjct: 1 MKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLLRP 58 >gi|315032340|gb|EFT44272.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] gi|329575394|gb|EGG56937.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 88 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R+EA LTQ E+ + QS I+ +E G ++ D + +A L L Sbjct: 33 LYHAREEAGLTQAELAQKAHTTQSTIARIERGD-NVSFDKLDDIARALGKKLV 84 >gi|288962006|ref|YP_003452316.1| transcriptional regulator [Azospirillum sp. B510] gi|288914286|dbj|BAI75772.1| transcriptional regulator [Azospirillum sp. B510] Length = 486 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ +F R +R++ LTQ + + S++++LE + + + ++ +A T + Sbjct: 2 QKKLFLGYKLRRLREQRGLTQASLAKTLELSPSYLNQLENNQRPLTLPVLMRIAATFELE 61 Query: 77 LWKLLK 82 L L+ Sbjct: 62 LSAFLE 67 >gi|302384441|ref|YP_003820264.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302195069|gb|ADL02641.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 72 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R A +TQ ++ R G + I +E GK + +++ +A + + + Sbjct: 10 NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAAVFGVEITAVFQ 69 >gi|260906262|ref|ZP_05914584.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 160 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R++A LTQ + R+G AQS IS E G+ + + +L L +P Sbjct: 8 IRRAREDAGLTQSVLAERSGVAQSVISSYEKGRREPSASALDVLLTAAGFRLVVEPEP 65 >gi|118480114|ref|YP_897265.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228917662|ref|ZP_04081203.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229094144|ref|ZP_04225224.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|229187275|ref|ZP_04314420.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|118419339|gb|ABK87758.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228596285|gb|EEK53960.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|228689247|gb|EEL43068.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|228841899|gb|EEM87005.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 79 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|148268470|ref|YP_001247413.1| phage repressor [Staphylococcus aureus subsp. aureus JH9] gi|150394533|ref|YP_001317208.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus JH1] gi|257136362|ref|YP_003169636.1| cI repressor-like protein [Staphylococcus phage P954] gi|257793283|ref|ZP_05642262.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258419779|ref|ZP_05682742.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719] gi|282904658|ref|ZP_06312533.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus C160] gi|295407324|ref|ZP_06817122.1| phage repressor [Staphylococcus aureus A8819] gi|297246908|ref|ZP_06930688.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|147741539|gb|ABQ49837.1| putative phage repressor [Staphylococcus aureus subsp. aureus JH9] gi|149946985|gb|ABR52921.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus JH1] gi|256681204|gb|ACV04947.1| cI repressor-like protein [Staphylococcus phage P954] gi|257787255|gb|EEV25595.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257844190|gb|EEV68576.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719] gi|282594907|gb|EFB99883.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus C160] gi|294967769|gb|EFG43800.1| phage repressor [Staphylococcus aureus A8819] gi|297176260|gb|EFH35547.1| conserved hypothetical protein [Staphylococcus aureus A8796] gi|315128291|gb|EFT84315.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus CGS03] gi|329728105|gb|EGG64548.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus 21172] Length = 238 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57 >gi|71736787|ref|YP_274675.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557340|gb|AAZ36551.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 203 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 25 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 84 >gi|23465974|ref|NP_696577.1| DNA binding protein [Bifidobacterium longum NCC2705] gi|23326688|gb|AAN25213.1| possible DNA binding protein [Bifidobacterium longum NCC2705] Length = 189 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Query: 7 DEPHLSDAILRE---RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 EP +++ RE R + R +R + T +E+ + G + ++SE+E G+ + Sbjct: 100 AEPVVAEEEPREFSLRGAIGHVLRELRTRDRRTLREVSEKAGVSLGYLSEVERGQKEASS 159 Query: 64 DNMIILAHTLDTPLWKLLK 82 + + +A L ++L+ Sbjct: 160 ELLSSIADALGVSTSRMLR 178 >gi|327458674|gb|EGF05022.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 96 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 32 NRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 90 >gi|326942848|gb|AEA18744.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 73 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +L+Q ++ G ++ IS +E G +I + +A + P+ ++ Sbjct: 5 NRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63 >gi|324324351|gb|ADY19611.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 120 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I + IR TQ++ + ++ +S +E+GK T + + + +++ + Sbjct: 4 IIGKRIKEIRMSIGYTQQQFADSVDISKPMVSYIESGKKTPSRETVSKISNLANVS 59 >gi|288904231|ref|YP_003429452.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288730956|emb|CBI12500.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 175 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%) Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 K L+Q+E+ + ++ IS E GK+ +I++++++A L L+K Sbjct: 3 KGKNLSQEELAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIK 54 >gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 284 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 27/59 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R A+++ +++ + G + ++S++E G + + + +A L L Sbjct: 9 VGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67 >gi|302531454|ref|ZP_07283796.1| regulator [Streptomyces sp. AA4] gi|302440349|gb|EFL12165.1| regulator [Streptomyces sp. AA4] Length = 435 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 27/49 (55%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + ++ ++Q++I TG +QS +SE+ G+ + D + +A L P Sbjct: 15 RLLRKHGVSQRQIAAMTGQSQSEVSEILKGRQVMAYDVLTRIADGLGVP 63 >gi|239927788|ref|ZP_04684741.1| hypothetical protein SghaA1_06176 [Streptomyces ghanaensis ATCC 14672] Length = 293 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 R R++ +++Q E+ R + IS +ETG+S + + ++ LA Sbjct: 25 PSGTAPAAEGVGPLLRAWREQRRISQLELALRADSSARHISFIETGRSRPSEEMVLRLAE 84 Query: 72 TLDTPLWK 79 LD P+ + Sbjct: 85 HLDVPVRE 92 >gi|168494769|ref|ZP_02718912.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] gi|183575326|gb|EDT95854.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] Length = 273 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa] Length = 400 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLWKLLK 82 + +R + LTQ+ + G + IS+ ETG S + + W L K Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLEK 70 Query: 83 P 83 P Sbjct: 71 P 71 >gi|159046177|ref|YP_001541849.1| XRE family transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913936|gb|ABV95368.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 85 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 30/53 (56%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A L Q ++ +R QS ++ LE+G+ I++ +++LA + + +L Sbjct: 20 ARKSAGLGQDDLADRLKCHQSLVARLESGERRIDVVELVVLARAIGFDPFDVL 72 >gi|186476299|ref|YP_001857769.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia phymatum STM815] gi|184192758|gb|ACC70723.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia phymatum STM815] Length = 317 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 5 KRDEPHLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +R A ER F R +R +T+K + + TG ++ ++ LE+G Sbjct: 13 QRANEEAPKAEREERDPFLTAMGERVRLLRARRGMTRKTLASETGLSERHLANLESGVGN 72 Query: 61 INIDNMIILAHTLDTPLWKLL 81 ++ + +A TL+ PL +++ Sbjct: 73 ASVLVLRQIAATLNCPLAEVI 93 >gi|145593885|ref|YP_001158182.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145594207|ref|YP_001158504.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303222|gb|ABP53804.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] gi|145303544|gb|ABP54126.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 225 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + +R+ LTQ+++ +R G + IS++E GK + D + A L Sbjct: 155 VVGHRLAEVRRTRGLTQQQVADRMGVTKGRISQIEQGKISGQ-DIVARYATALG 207 >gi|86742835|ref|YP_483235.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86569697|gb|ABD13506.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 403 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLD 74 + E + +R +TQ E+ R G + +++LE G+ I I + LA LD Sbjct: 1 MTEIRALGDRVAQVRVRRSMTQTELAERAGVSTDLVTKLEQGQRDGIRISTLHSLARALD 60 Query: 75 TP 76 P Sbjct: 61 VP 62 >gi|46203184|ref|ZP_00208841.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R T ++ + +++SE+E G+ + + + + L L Sbjct: 36 RHVIGGILRRARLAQGRTLVDVAAAARVSTAYLSEVERGRKEASSEVLAAVCGALGLRLV 95 Query: 79 KLL 81 L+ Sbjct: 96 DLV 98 >gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 168 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62 >gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F RKE +TQ E+ + G +S+ E +++++ LA + +L+ Sbjct: 6 FGMLIAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLLYPDVNSLPKLAGIFGISVDQLM 65 Query: 82 K 82 + Sbjct: 66 Q 66 >gi|321272298|gb|ADW80183.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] gi|321272350|gb|ADW80231.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 312 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQ+++ ++ G I E E G++ ++++ + +A L + LL Sbjct: 170 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAGVSLEMLDEIAKVLSISITDLL 229 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RN R TQK++ + I + E G I+I + LA L T Sbjct: 14 KVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKLYELAEALSTTARD 73 Query: 80 L 80 L Sbjct: 74 L 74 >gi|313676267|ref|YP_004054263.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312942965|gb|ADR22155.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 178 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +R E L+Q + G + I+ E + +I+N++ +A + +++ Sbjct: 6 NNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQPSIENLVNIADYFGIDIHQIV 63 >gi|282865024|ref|ZP_06274077.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559947|gb|EFB65496.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 401 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ +TQ ++ R+G + I +LE G + + I+ + LA LD L +L+ Sbjct: 6 GDRVRALREFRDITQDQLAQRSGVSVDTIRKLEQGVRESARINTLRNLARALDVQLERLV 65 >gi|322420665|ref|YP_004199888.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320127052|gb|ADW14612.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 78 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK LT +E G + +++S LE GK T+ ++ ++ + H L L Sbjct: 10 GRAVRQKRKNDGLTLEEAAAVCGVSYAFMSALENGKETVQLNKLLQVLHCLGIDL 64 >gi|229056996|ref|ZP_04196390.1| Helix-turn-helix repressor protein [Bacillus cereus AH603] gi|228720273|gb|EEL71849.1| Helix-turn-helix repressor protein [Bacillus cereus AH603] Length = 71 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ L+Q+++ + G ++ I +E GK ++ +A T + + Sbjct: 3 NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIEHVF 60 >gi|224542029|ref|ZP_03682568.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] gi|224525086|gb|EEF94191.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] Length = 101 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 20/51 (39%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 R R + +Q+E+ R ++ I + E G+ +I + L Sbjct: 2 GERLRKARLKMGYSQEEVARRIDTHRTTIGKYENGECEPSIKVLAKLIEIY 52 >gi|62317249|ref|YP_223102.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269230|ref|YP_418521.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189022510|ref|YP_001932251.1| Helix-turn-helix motif [Brucella abortus S19] gi|237816809|ref|ZP_04595801.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|254690756|ref|ZP_05154010.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870] gi|254698535|ref|ZP_05160363.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59] gi|254731982|ref|ZP_05190560.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292] gi|256255939|ref|ZP_05461475.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68] gi|260544487|ref|ZP_05820308.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260756327|ref|ZP_05868675.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759755|ref|ZP_05872103.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762994|ref|ZP_05875326.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882151|ref|ZP_05893765.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297249296|ref|ZP_06932997.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62197442|gb|AAX75741.1| transcriptional regulator, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939504|emb|CAJ12476.1| Helix-turn-helix motif:Cupin domain [Brucella melitensis biovar Abortus 2308] gi|189021084|gb|ACD73805.1| Helix-turn-helix motif [Brucella abortus S19] gi|237787622|gb|EEP61838.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|260097758|gb|EEW81632.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260670073|gb|EEX57013.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673415|gb|EEX60236.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676435|gb|EEX63256.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260871679|gb|EEX78748.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297173165|gb|EFH32529.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 182 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+E R G S IS +E +S ++ + + + + + Sbjct: 6 GGRLRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64 >gi|58697513|ref|ZP_00372774.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58536024|gb|EAL59708.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 247 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R + TQK++ + G + + E G I+I+ + +A L + Sbjct: 7 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 66 Query: 79 KLL 81 L+ Sbjct: 67 DLI 69 Score = 44.2 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G+ I ++ + +A TL + LL Sbjct: 164 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISITDLL 222 >gi|315127949|ref|YP_004069952.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016463|gb|ADT69801.1| Predicted transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 66 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ RK+A L+Q+E+ + ++ IS +ET + T ++ + +A +T + +L Sbjct: 3 NHIAEFRKKAGLSQQELADAINVSRKTISTVETSRFTPSVIIALKIAQHFNTSVERLF 60 >gi|218458185|ref|ZP_03498276.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli Kim 5] Length = 110 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R +R +++Q E+ G I + E G + ++ + +A LD + L Sbjct: 8 IVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISVL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|16080491|ref|NP_391318.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221311387|ref|ZP_03593234.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315714|ref|ZP_03597519.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320629|ref|ZP_03601923.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324914|ref|ZP_03606208.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|81556692|sp|P71049|SLRR_BACSU RecName: Full=HTH-type transcriptional regulator slrR gi|1495278|emb|CAA96488.1| hypothetical protein [Bacillus subtilis] gi|1762125|gb|AAB39888.1| putative transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|1945689|emb|CAB08022.1| hypothetical protein [Bacillus subtilis] gi|2635951|emb|CAB15443.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 152 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 + R RK + ++ +G ++S++S++E G ++ + ++ TL+ L + Sbjct: 1 MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|327467252|gb|EGF12756.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 97 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ + R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 29 RVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87 >gi|319785314|ref|YP_004144790.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171202|gb|ADV14740.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R R + +LT +E+ R G ++S + +E G + I M A + L+ Sbjct: 39 LFGKTIRLGRMQHRLTGQELAERIGVSRSTLQRIEKGDPKVEIGLMFEAAAIVGVKLFD 97 >gi|314942785|ref|ZP_07849604.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314953679|ref|ZP_07856562.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994135|ref|ZP_07859444.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314998285|ref|ZP_07863150.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313587738|gb|EFR66583.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591444|gb|EFR70289.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594321|gb|EFR73166.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598476|gb|EFR77321.1| helix-turn-helix protein [Enterococcus faecium TX0133C] Length = 394 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R + ++ R E ++Q ++ G ++ +++++E G T +I M + L+ Sbjct: 3 QRNLDYRLLKDRRNEYGVSQNKLATTCGLSRPYLNQIENGGVTASIKTMRKIFDQLE 59 >gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 193 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 17 RERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 E+ IF + IR + LTQKE G + + +E G T I + + Sbjct: 86 TEKKIFNPRAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIKR 145 Query: 72 TLDTPL 77 L PL Sbjct: 146 ALGKPL 151 >gi|312864429|ref|ZP_07724662.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100150|gb|EFQ58361.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 75 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IR++ LTQ+E+ G + I LE + +++ + +A D + ++ + Sbjct: 11 NLKEIREKGGLTQQELAEAVGVRRETILHLENNRYNPSLELALKIAQVFDKSVEEIFR 68 >gi|300917191|ref|ZP_07133875.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300415568|gb|EFJ98878.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 178 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 27/58 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + +R++ + + T +++ + ++E +S+ + + +A L+ P + P Sbjct: 12 LKQLRQQRGWSLSRLAEATRVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69 >gi|300172531|ref|YP_003771696.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886909|emb|CBL90877.1| Transcriptional regulator, helix-turn-helix XRE-family [Leuconostoc gasicomitatum LMG 18811] Length = 132 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + ++Q+++ ++ ++ +S E+G +T ++ N+I L L L+ Sbjct: 7 NQLKKYRSDLNMSQEDVADKLFVSRQAVSRWESGDATPDLTNLIKLTEIFKCSLDSLV 64 >gi|295677629|ref|YP_003606153.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] gi|295437472|gb|ADG16642.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 235 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 34/74 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P ++ + N +R E +L+ + +G +++ ++++E+ +S +I + Sbjct: 21 PRSAEPFDALEQLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCK 80 Query: 69 LAHTLDTPLWKLLK 82 +A L + L+ Sbjct: 81 VAAALKVSVAAFLR 94 >gi|255974651|ref|ZP_05425237.1| transcriptional regulator [Enterococcus faecalis T2] gi|255967523|gb|EET98145.1| transcriptional regulator [Enterococcus faecalis T2] Length = 427 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + RKE KL Q+E+ ++ G +S IS++E+GK I+ + + + L+ Sbjct: 3 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIINVLN 54 >gi|171778435|ref|ZP_02919593.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282836|gb|EDT48260.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 183 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK+ +++Q + N ++ +S E GKS +++ ++ ++ + +L+K Sbjct: 5 NISELRKQYQMSQDDFANIFHVSRQTVSNWENGKSYPDVEMLVKISDYFGISVDQLIK 62 >gi|167747535|ref|ZP_02419662.1| hypothetical protein ANACAC_02256 [Anaerostipes caccae DSM 14662] gi|239623198|ref|ZP_04666229.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652897|gb|EDR97026.1| hypothetical protein ANACAC_02256 [Anaerostipes caccae DSM 14662] gi|239522164|gb|EEQ62030.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 139 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 26/52 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R+E +TQ+E+ + S +S++E+G I + + + L+ Sbjct: 9 AEEIKRLREERDMTQEELAESAEISLSHLSKVESGSRMIGMKTYSKILYALN 60 >gi|116670018|ref|YP_830951.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116610127|gb|ABK02851.1| transcriptional regulator, XRE family [Arthrobacter sp. FB24] Length = 116 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R++R+ T +E+ + + ++SE+E G+ + + + + LD PL Sbjct: 5 RHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 SMLR 68 >gi|160876037|ref|YP_001555353.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160861559|gb|ABX50093.1| transcriptional regulator, XRE family [Shewanella baltica OS195] Length = 204 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 R +RK +TQ ++ + AQ+ I +LE G N+ LA L T L Sbjct: 4 AERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPR--NIEALAKALQTTPEFL 60 >gi|78189754|ref|YP_380092.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78171953|gb|ABB29049.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 135 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 + P + R+ F I K +TQ+++ + G +S++S + G + + Sbjct: 13 KISPVTKKFVKRQGE-FAVRVSEIMKSTGMTQRQLAEKLGKKESYVSRILAGWANPTLKT 71 Query: 66 MIILAHTLD 74 + + Sbjct: 72 ITEFEVAIG 80 >gi|332886031|gb|EGK06275.1| hypothetical protein HMPREF9456_00149 [Dysgonomonas mossii DSM 22836] Length = 72 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + +R I RNIR+ L+ ++ + + + +E G++ I + + Sbjct: 2 DKEILKRKI-GLKIRNIREGKNLSIMDLADMLDIEYNNLIRIEKGRTNPTIITLYKIGQA 60 Query: 73 LDTPLWKLL 81 L+ L +++ Sbjct: 61 LNVKLPEIV 69 >gi|317133164|ref|YP_004092478.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471143|gb|ADU27747.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 197 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + N +RK LTQ E+ + + +S+ E +S +I + LA + Sbjct: 5 KPVIAKNIVELRKLTNLTQAELAGKLHYTDKAVSKWERAESVPDISVLKELAVLFGVTVD 64 Query: 79 KLLK 82 LL+ Sbjct: 65 YLLE 68 >gi|228942196|ref|ZP_04104736.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975125|ref|ZP_04135684.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981764|ref|ZP_04142059.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228777876|gb|EEM26148.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228784646|gb|EEM32666.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817530|gb|EEM63615.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 79 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|167756126|ref|ZP_02428253.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402] gi|167704118|gb|EDS18697.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402] Length = 156 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IR LTQK++ +G + I + E K + ++ +A+ L+ PL Sbjct: 4 GDKIKKIRNYRGLTQKQLGELSGIHEVAIRKYELNKVMPKQEQLLKIANALNVPL 58 >gi|148998982|ref|ZP_01826416.1| Prophage LambdaBa04, DNA-binding protein [Streptococcus pneumoniae SP11-BS70] gi|147755190|gb|EDK62243.1| Prophage LambdaBa04, DNA-binding protein [Streptococcus pneumoniae SP11-BS70] Length = 76 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 R+ F + RKE KL+Q+++ + G+++ I++ E G+S NI N+ + Sbjct: 3 DKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAQWEKGESVPNIYNVEDICT 62 Query: 72 TLDTPLWKLL 81 P +L Sbjct: 63 YFAFPADIIL 72 >gi|189423925|ref|YP_001951102.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189420184|gb|ACD94582.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 243 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 FR R+ L Q +I ++ G ++S ++ ETG + + ++++A LD L Sbjct: 4 AELFRRAREAKGLKQSDIADQCGISRSALARFETGSLRLAEETLLLIAPLLDIDPEFL 61 >gi|134298402|ref|YP_001111898.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051102|gb|ABO49073.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 738 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 24/41 (58%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 K+TQ E+ + G Q +IS++E G ++ +D ++ + + Sbjct: 16 KITQAELASWLGVTQDYISKIENGNISVGLDFLLKFCNAVG 56 >gi|89893339|ref|YP_516826.1| hypothetical protein DSY0593 [Desulfitobacterium hafniense Y51] gi|219666611|ref|YP_002457046.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332787|dbj|BAE82382.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536871|gb|ACL18610.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 71 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R+E L Q+E ++ +S +E GK +++ +A + + ++ Sbjct: 3 NKVEQLRRERGLNQEEFAKAIRVSRQTVSSIENGKYNPSLELAFAIADFFEKSIEEIF 60 >gi|332704687|ref|ZP_08424775.1| helix-turn-helix domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554836|gb|EGJ51880.1| helix-turn-helix domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 116 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E + R + +TQ+++ +TG Q ISE+E K I +N L L+ Sbjct: 52 TEAELPGAVLVGARAKEGITQRDLSAKTGIPQRHISEMENAKRPIGRENARKLGEALNVS 111 >gi|331090621|ref|ZP_08339472.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401061|gb|EGG80656.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] Length = 160 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++IR++ KLTQ++ + ++ +S E K+ +I +I+++ L L+ Sbjct: 3 FGEQIKSIRQKEKLTQEQFAMKLNVSRQAVSNWENNKNLPDIGMLILMSDVFQISLDYLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|295693005|ref|YP_003601615.1| transcriptional regulator, xre family [Lactobacillus crispatus ST1] gi|295031111|emb|CBL50590.1| Transcriptional regulator, XRE family [Lactobacillus crispatus ST1] Length = 119 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS +E K I+I + +A L+T + Sbjct: 5 LGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALNTTTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|296491938|ref|YP_003662405.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] gi|289176825|emb|CBJ92994.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] Length = 136 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQS-----WISELETGKSTINIDNM 66 + I + + N RK L+Q+E+ G S IS+ E G + Sbjct: 7 AKTIQKNIYMNANRLIEARKFRGLSQRELGEALGITDSETAGQHISKYERGVRLPPYKTV 66 Query: 67 IILAHTLDTPL 77 +A LD P Sbjct: 67 REIAKILDMPP 77 >gi|256849134|ref|ZP_05554567.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|312977969|ref|ZP_07789715.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] gi|256713910|gb|EEU28898.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|310895276|gb|EFQ44344.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 95 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI N + RK+ +LTQ+E+ + G + I LE G+ +I L +T + Sbjct: 1 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|255103139|ref|ZP_05332116.1| XRE family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255308329|ref|ZP_05352500.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 78 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++ R + L++ ++ G +I+ LE G+ +++ + +A +T + + Sbjct: 2 NKLKDFRIQKGLSRNQLGAELGLTSRYIAFLENGERVPSLNTAVKIAAYFNTSIEYIF 59 >gi|182626743|ref|ZP_02954483.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182626777|ref|ZP_02954516.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182626865|ref|ZP_02954601.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182627176|ref|ZP_02954886.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177907426|gb|EDT70107.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177907821|gb|EDT70425.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177907877|gb|EDT70472.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177907911|gb|EDT70503.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 71 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + E + N + R + LTQ+ + + G IS E + + + ++ LA L Sbjct: 2 KVKNEEVNLSKNLKENRLKKNLTQRALAKKCGLDFHTISLNENKERNSSFEIILRLALGL 61 Query: 74 DTPLWKLL 81 + L +LL Sbjct: 62 NISLEELL 69 >gi|168217329|ref|ZP_02642954.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182380554|gb|EDT78033.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 223 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|168209805|ref|ZP_02635430.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170712069|gb|EDT24251.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 223 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|134103416|ref|YP_001109077.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006044|ref|ZP_06564017.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916039|emb|CAM06152.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 148 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 34/76 (44%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +R + ++ A+ + R R A+++ +++ R G + ++S++E G + + Sbjct: 2 ERVDKTVNKAVNQAVSDLGAYIRTQRGNAQISLRQLAKRAGVSNPYLSQVERGLRKPSAE 61 Query: 65 NMIILAHTLDTPLWKL 80 + +A L L Sbjct: 62 ILQQIAKALRISAEAL 77 >gi|330816385|ref|YP_004360090.1| hypothetical protein bgla_1g14640 [Burkholderia gladioli BSR3] gi|327368778|gb|AEA60134.1| hypothetical protein bgla_1g14640 [Burkholderia gladioli BSR3] Length = 384 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + ++ R A++TQ+ + G A++ + +E GK I+ + + A TP + Sbjct: 10 EVLGPRLKSARSLARMTQEVAAQKLGMARTTVVAIENGKRAISSEELRAFAEVYATPESE 69 Query: 80 LL 81 LL Sbjct: 70 LL 71 >gi|326390747|ref|ZP_08212300.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993141|gb|EGD51580.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 67 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R + KLTQKE+ G ++S++E G ++ I +A+ +T + ++ Sbjct: 2 NKLKELRMKYKLTQKELAKNLGITPDYVSQIERG-RIPGMETAIKIANFFNTTIDEIF 58 >gi|307127250|ref|YP_003879281.1| hypothetical protein SP670_1118 [Streptococcus pneumoniae 670-6B] gi|306484312|gb|ADM91181.1| conserved domain protein [Streptococcus pneumoniae 670-6B] Length = 74 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRN-RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQ+ + +S S++E+G I+ID++I LA + L L+ Sbjct: 3 KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLV 61 >gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 437 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +RK+ LTQ + + G + S++++LE + + + ++ LA Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDP 61 >gi|294789222|ref|ZP_06754461.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294482963|gb|EFG30651.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 120 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ + +Q+E+ + + + +++E G+S+++ID + +A + + LL Sbjct: 6 KIRVMREINQWSQEEMAEKLAMSANGYAKIERGQSSLSIDKLKQIAQIFNIDMVDLL 62 >gi|289640812|ref|ZP_06472983.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509388|gb|EFD30316.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 98 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 4 RKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 R+ EP +A R+ F R +R+ +Q E+ G QS ++ E G + Sbjct: 13 RRMGEPGAWEAYQAARLAFELGRAVRELRQRRAWSQAELARTAGMTQSAVARFEAGGTVP 72 Query: 62 NIDNMIILAHTLDTPLWKLLKP 83 + + LA LD L + P Sbjct: 73 TLPVLGRLAEALDADLDVRVTP 94 >gi|290956222|ref|YP_003487404.1| hypothetical protein SCAB_17071 [Streptomyces scabiei 87.22] gi|260645748|emb|CBG68839.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 330 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 32/54 (59%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ +L+Q E+ R G + +S +ETG+S + + ++ LA LD P+ + Sbjct: 74 LRAWREQRRLSQLELALRAGSSARHVSFVETGRSRPSEEMVLRLAEHLDVPVRE 127 >gi|238758652|ref|ZP_04619827.1| DNA-binding phage-related protein [Yersinia aldovae ATCC 35236] gi|238703163|gb|EEP95705.1| DNA-binding phage-related protein [Yersinia aldovae ATCC 35236] Length = 93 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R+ LTQ+++ R G + IS +E G + N+ + A L Sbjct: 21 RQAMMTELKAARQRCNLTQEDVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 76 >gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 10 IANKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|227879298|ref|ZP_03997165.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256844478|ref|ZP_05549964.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|262047150|ref|ZP_06020108.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|227861093|gb|EEJ68745.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613556|gb|EEU18759.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|260572395|gb|EEX28957.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 96 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI N + RK+ +LTQ+E+ + G + I LE G+ +I L +T + Sbjct: 2 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 61 Query: 80 LL 81 L Sbjct: 62 LF 63 >gi|262199526|ref|YP_003270735.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082873|gb|ACY18842.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 123 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL---- 77 R +R+ + Q E+ + G + + E+E G +ID +I ++ LD + Sbjct: 10 LGQRLRLVREGLGMGQGELASACGVSDARYQEIEAGSYLPSIDELIAISDALDIDVSFFC 69 Query: 78 WKLLKP 83 +LKP Sbjct: 70 EDILKP 75 >gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] Length = 437 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +RK+ LTQ + + G + S++++LE + + + ++ LA Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDP 61 >gi|218673348|ref|ZP_03523017.1| putative transcriptional regulator [Rhizobium etli GR56] Length = 125 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 F R +R ++QKE+ + +++S LE GK D + +A + Sbjct: 4 FGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58 >gi|254477883|ref|ZP_05091268.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028468|gb|EEB69304.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 203 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P + R RKE LT +E +S +S++E ++ + + + Sbjct: 10 TPASEAIEAPDGDALGKMIRESRKEKGLTLEEAAKAANIGRSTLSKIENNQTRPSFEIIR 69 Query: 68 ILAHTLDTPLWKLL 81 L TLD +L Sbjct: 70 RLMQTLDLQTPQLF 83 >gi|209517499|ref|ZP_03266339.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209502032|gb|EEA02048.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 235 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 34/74 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P ++ + N +R E +L+ + +G +++ ++++E+ +S +I + Sbjct: 21 PRSAEPFDALEQLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCK 80 Query: 69 LAHTLDTPLWKLLK 82 +A L + L+ Sbjct: 81 VAAALKVSVAAFLR 94 >gi|119026257|ref|YP_910102.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765841|dbj|BAF40020.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 158 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAHTLDTPLWKLLK 82 R IR+ TQ E+ TG Q IS ETG + + +D L+ L L+ Sbjct: 98 LREIRRTRGYTQSELSEMTGIPQPNISWFETGYRSTSGMRLDTARRLSEALQCDPVDFLE 157 >gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK L+Q ++ G +S E G + I+ +I +A + +L Sbjct: 1 MVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|84686781|ref|ZP_01014668.1| hypothetical protein 1099457000266_RB2654_22428 [Maritimibacter alkaliphilus HTCC2654] gi|84665212|gb|EAQ11691.1| hypothetical protein RB2654_22428 [Rhodobacterales bacterium HTCC2654] Length = 85 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 33/58 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +A L QK++ +R QS I+ LE+G+ +++ +++LA + +++L Sbjct: 15 QALVDARVKAGLGQKDLADRLRCHQSLIARLESGQRRVDVVELVVLACAIGFDPFEVL 72 >gi|297538223|ref|YP_003673992.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297257570|gb|ADI29415.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 184 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R +L+Q+ + + G A + IS +E+G ++ ++ + + + L + Sbjct: 5 LGARLKIVRLRHQLSQRALAKKAGVANATISLIESGNTSPSVSALKRILAGIPMTLAEFF 64 >gi|289627341|ref|ZP_06460295.1| Fis family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869544|gb|EGH04253.1| Fis family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 154 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R IR A L +++ ++ +++ +E G+ +I+I+ + + L Sbjct: 4 REALGQVLREIRVAAGLRREDCS--AALSREYLAGVERGQRSISIEKLHSICDCLGITP 60 >gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 247 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N R +RK+ ++ + + + ++ ++E G++ ++ + +A Sbjct: 9 GANIRELRKKRGISARVLAEAVNISTPFVYDIENGRTLPSVPVLNAIAQYFGV 61 >gi|240016239|ref|ZP_04722779.1| putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|317163944|gb|ADV07485.1| putative phage associated protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 99 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F ++R + TQ E+ G Q ++S +E K ++ + LA+ L ++ Sbjct: 28 GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 85 >gi|226314233|ref|YP_002774129.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226097183|dbj|BAH45625.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 427 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76 E F R R A LT E+ RTG A IS++E+ T N+ +++ LA LD P Sbjct: 4 EGKTFGGILRVYRNRANLTLTELSERTGVASGTISKIESDAFTLPNMQHVMKLAKVLDIP 63 Query: 77 LWKLLKP 83 L+ + P Sbjct: 64 LYTAIVP 70 >gi|218677823|ref|ZP_03525720.1| putative HTH transcriptional regulator [Rhizobium etli CIAT 894] Length = 110 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKVRRIRNALMLTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|206600122|ref|YP_002241627.1| gp43 [Mycobacterium phage Pacc40] gi|206287210|gb|ACI12554.1| gp43 [Mycobacterium phage Pacc40] Length = 77 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ + E+ +G + ++S+LE G N LA L P+ L +P Sbjct: 10 QELRVIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 69 >gi|148994361|ref|ZP_01823604.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|289168600|ref|YP_003446869.1| transcriptional regulator [Streptococcus mitis B6] gi|293364230|ref|ZP_06610956.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307702415|ref|ZP_07639371.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315611783|ref|ZP_07886705.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|322375921|ref|ZP_08050432.1| conserved domain protein [Streptococcus sp. C300] gi|147927292|gb|EDK78325.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|288908167|emb|CBJ23009.1| transcriptional regulator [Streptococcus mitis B6] gi|291317076|gb|EFE57503.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307623997|gb|EFO02978.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315316198|gb|EFU64228.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|321279189|gb|EFX56231.1| conserved domain protein [Streptococcus sp. C300] Length = 64 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE ++Q E+ G ++ I+ +E K ++ + LA +L T L L Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|29830964|ref|NP_825598.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29608078|dbj|BAC72133.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 447 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E I + +R E LTQ+++ + ++IS LE G+ + + +A L Sbjct: 6 EPEIIGRRVQRLRAERGLTQRQLAEPA-YTPAYISTLEAGRVRASEPALRHIADRLGVAY 64 Query: 78 WKL 80 +L Sbjct: 65 EEL 67 >gi|49481669|ref|YP_039048.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140498|ref|YP_086329.1| DNA-binding protein [Bacillus cereus E33L] gi|196040491|ref|ZP_03107791.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047511|ref|ZP_03114721.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867013|ref|YP_002752391.1| DNA-binding protein [Bacillus cereus 03BB102] gi|301056519|ref|YP_003794730.1| DNA-binding helix-turn helix protein [Bacillus anthracis CI] gi|49333225|gb|AAT63871.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973967|gb|AAU15517.1| DNA-binding protein [Bacillus cereus E33L] gi|196021625|gb|EDX60322.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028623|gb|EDX67230.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|225787723|gb|ACO27940.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300378688|gb|ADK07592.1| DNA-binding helix-turn helix protein [Bacillus cereus biovar anthracis str. CI] Length = 73 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +L+Q ++ G ++ IS +E G +I + +A + P+ ++ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63 >gi|19746274|ref|NP_607410.1| hypothetical protein spyM18_1303 [Streptococcus pyogenes MGAS8232] gi|19748461|gb|AAL97909.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 52 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Query: 35 LTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77 ++Q+E+ N++G +++ IS +ET KS T+ + + LA LD P+ Sbjct: 1 MSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPI 44 >gi|88855432|ref|ZP_01130096.1| hypothetical protein A20C1_01376 [marine actinobacterium PHSC20C1] gi|88815339|gb|EAR25197.1| hypothetical protein A20C1_01376 [marine actinobacterium PHSC20C1] Length = 102 Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 35/64 (54%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R++R + T +++ ++ A ++SE+E G+ + + + +A LDTP+ Sbjct: 5 RQEIGDVLRDVRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVAEALDTPIS 64 Query: 79 KLLK 82 +++ Sbjct: 65 VIMR 68 >gi|325965442|ref|YP_004243347.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323471529|gb|ADX75213.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 64 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R+ LTQ ++ R G QS ++ E G I + N+ +A L Sbjct: 2 VRLNRESQGLTQHQLATRMGSTQSVVARWERGDHEITMANLARIADALGV 51 >gi|323483673|ref|ZP_08089056.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323692636|ref|ZP_08106868.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] gi|323403009|gb|EGA95324.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323503333|gb|EGB19163.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] Length = 238 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +RK LT +++ ++ ++S +S+ E G+ +I+I + ++ L+ + +LL Sbjct: 8 LGSILRKVRKLRGLTIQQLADKIQKSKSTLSKYERGEISIDILTIKEISRVLNISIDELL 67 >gi|313903103|ref|ZP_07836497.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466605|gb|EFR62125.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR+ L+ E+ RTG S IS+ E + ++D + LA + P+ L Sbjct: 4 LGGRLRRIRESRNLSIYEVERRTGMHFSTISKYERNERQPSLDVLRELAALYEVPVSVFL 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|312602174|ref|YP_004022019.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312169488|emb|CBW76500.1| Transcriptional regulator, Cro/CI family [Burkholderia rhizoxinica HKI 454] Length = 68 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R+ LTQ++ G AQ+ +S++E GK +D + LA L+ Sbjct: 15 VGQAVARQRRLRGLTQEQRSEAAGLAQASLSQIERGKILPGLDQLAQLAQLLN 67 >gi|293401673|ref|ZP_06645815.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304931|gb|EFE46178.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 67 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N+R++ L+Q +I +Q S ETG I I +I LA +T + L Sbjct: 1 MVFVRLKNLREDHDLSQSDIAKYLNISQRTYSYYETGGRDIPIQILIKLADYYNTSIDYL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|270293228|ref|ZP_06199439.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M143] gi|270279207|gb|EFA25053.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M143] Length = 97 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R+E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 29 RVAIMSELIEARREQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87 >gi|269217075|ref|ZP_06160929.1| transcriptional regulator, Cro/CI family [Slackia exigua ATCC 700122] gi|269129212|gb|EEZ60297.1| transcriptional regulator, Cro/CI family [Slackia exigua ATCC 700122] Length = 76 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R E L Q + +G + + I + ETG+S + +D LA L + LL Sbjct: 15 ARRMKGLRTERGLDQATLSRISGVSLNLIQQYETGQSAMRLDTAASLAEALGCSIDALL 73 >gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R] gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] Length = 208 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +RKE LTQ++ G I + E+G+ I+I+ ++ +A+ P+ Sbjct: 8 ETIGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLNIANYFKIPISY 67 Query: 80 LL 81 L Sbjct: 68 FL 69 >gi|229028239|ref|ZP_04184378.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] gi|228733075|gb|EEL83918.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] Length = 83 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 14 QVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73 Query: 76 PLWKLL 81 + KL Sbjct: 74 TVDKLF 79 >gi|168185963|ref|ZP_02620598.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] gi|169295958|gb|EDS78091.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C str. Eklund] Length = 70 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLLK 82 N + R++ +T K++ ++G A ++S+LE KS + + M ++ L + + Sbjct: 2 NRIKFFRQQKSMTVKKLSEKSGIAVGYVSDLENNNKSNPSREVMKKISAALGQTVMDVFF 61 Query: 83 P 83 P Sbjct: 62 P 62 >gi|220921966|ref|YP_002497267.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946572|gb|ACL56964.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 227 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 NN RN R +TQ+++ +Q+ I ++E G + + + +A L + +L Sbjct: 5 GNNVRNARLRLGMTQEQLAEAANVSQTTIDKIERGLTKRS-KYLPWIAIALSVDISEL 61 >gi|221069664|ref|ZP_03545769.1| transcriptional regulator, XRE family with shikimate kinase activity [Comamonas testosteroni KF-1] gi|220714687|gb|EED70055.1| transcriptional regulator, XRE family with shikimate kinase activity [Comamonas testosteroni KF-1] Length = 300 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R LT++ + + ++ ++ LE G ++I + +A L + +LL Sbjct: 26 LGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQIAQALQCSMAELL 85 >gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 168 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62 >gi|325104291|ref|YP_004273945.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324973139|gb|ADY52123.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 120 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAH 71 + R++ +LTQ+++ + G +S+IS++ET + I + + + Sbjct: 58 GEMLKEAREQRQLTQEQLAQKVGKKRSYISKVETDYGNNIKLQTLKEIVE 107 >gi|320321186|gb|EFW77327.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 121 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +RK + ++Q + + G + E G ++ +I ++ D Sbjct: 12 RSFVGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 71 Query: 79 KLL 81 +LL Sbjct: 72 ELL 74 >gi|308270921|emb|CBX27531.1| hypothetical protein N47_H23530 [uncultured Desulfobacterium sp.] Length = 120 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTIN 62 RKR+ + L E+ + R ++ LTQ+ + G +S +S LE+ GK + Sbjct: 21 RKREGFRKAYDDLEEKYRLIQEMLLARSKSGLTQEAVATLMGTTKSAVSRLESAGKHAPS 80 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 I + A + L L P Sbjct: 81 IITLKKYAKAVGCNLEIKLVP 101 >gi|306831700|ref|ZP_07464857.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978639|ref|YP_004288355.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426125|gb|EFM29240.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178567|emb|CBZ48611.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 147 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R + +LTQ+E+ R + +S ETG++ N D + +L+ + + LL Sbjct: 7 LKNLRDKYQLTQEELAARVLVTRQAVSRWETGETQPNTDTLKLLSKEFNISINTLL 62 >gi|304406701|ref|ZP_07388356.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304344234|gb|EFM10073.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 121 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +R++ +TQ+++ +++ I+ ET ++ NI+ + LA + Sbjct: 1 MTFGERLKELREQRNMTQQDVAIAVNKSRTDIAGYETKGTSPNIETVRRLADLFKVSIDY 60 Query: 80 LL 81 + Sbjct: 61 MF 62 >gi|300917947|ref|ZP_07134577.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300414844|gb|EFJ98154.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] Length = 73 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 R++RK+ LT +++ + G ++S++ ELE +S + + + LA L Sbjct: 5 LGEKLRDLRKQRGLTLEKLADMAGLSKSYLWELENRESQRPSAEKLTALADALGV 59 >gi|289422398|ref|ZP_06424244.1| putative DNA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289157233|gb|EFD05852.1| putative DNA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 194 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R+ +T K+ R+G + + +S+LE G ++ + +A T++ + L Sbjct: 6 LGSKLADYRRSNNITIKDFSKRSGISTALLSQLERGLGNPSLSVITSIARTMNLSVSSLF 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|320007840|gb|ADW02690.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 277 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P D R + R +R+ A L+Q E+ R + ++I E + ++ Sbjct: 3 LPKDLDPYANPRAFYGAELRRLREAAGLSQNELGERAFCSGTYIGLFEAAERRPQVEISR 62 Query: 68 ILAHTLD 74 L L Sbjct: 63 ALDALLG 69 >gi|300773943|ref|ZP_07083812.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300760114|gb|EFK56941.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 120 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAH 71 + R++ +LTQ+++ + G +S+IS++ET + I + + + Sbjct: 58 GEMLKEAREQRQLTQEQLAQKVGKKRSYISKVETDYGNNIKLQTLKEIVE 107 >gi|225860372|ref|YP_002741881.1| hypothetical protein SPT_0383 [Streptococcus pneumoniae Taiwan19F-14] gi|270292145|ref|ZP_06198360.1| conserved domain protein [Streptococcus sp. M143] gi|303255209|ref|ZP_07341283.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307710486|ref|ZP_07646923.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307711382|ref|ZP_07647800.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|322377106|ref|ZP_08051598.1| conserved domain protein [Streptococcus sp. M334] gi|331265735|ref|YP_004325365.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|225726800|gb|ACO22651.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|270279673|gb|EFA25515.1| conserved domain protein [Streptococcus sp. M143] gi|302597842|gb|EFL64914.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307616800|gb|EFN95982.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307618749|gb|EFN97888.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|321281819|gb|EFX58827.1| conserved domain protein [Streptococcus sp. M334] gi|326682407|emb|CBZ00024.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|332202241|gb|EGJ16310.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 64 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE ++Q E+ G ++ I+ +E K ++ + LA +L T L L Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 66 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R+ +Q E+ R G ++ I+ LETGK ++ +A + + Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|325679169|ref|ZP_08158760.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109098|gb|EGC03323.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 373 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F F+ R+E +LTQ++ + +S E G+++ +I + I+A + LL Sbjct: 5 FSEVFKKFRRERELTQEQAAEAFSVSTQAVSRWENGQTSPDITLLPIIAEYFGVSIETLL 64 >gi|288957911|ref|YP_003448252.1| transcriptional regulator [Azospirillum sp. B510] gi|288910219|dbj|BAI71708.1| transcriptional regulator [Azospirillum sp. B510] Length = 353 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 RKR ++ + + R R ++Q+++ G + + E G + I+ Sbjct: 112 RKRGRRGSPESWSVDAHV-GQRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISA 170 Query: 64 DNMIILAHTLDTP 76 + L LD P Sbjct: 171 GTLYRLGQVLDVP 183 >gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] Length = 153 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R + TQ+ + + + IS+ E K+T +I+ + + T + +L Sbjct: 4 LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSIL 63 >gi|238917584|ref|YP_002931101.1| putative transcriptional regulator [Eubacterium eligens ATCC 27750] gi|238872944|gb|ACR72654.1| putative transcriptional regulator [Eubacterium eligens ATCC 27750] Length = 97 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + + Sbjct: 32 MAVTNNIREIREQRGIYQNDLAAAIGYSTKTVDRIERGDSTPSAEFMLQISKYFNMLVED 91 Query: 80 LL 81 + Sbjct: 92 VF 93 >gi|218660254|ref|ZP_03516184.1| hypothetical protein RetlI_11854 [Rhizobium etli IE4771] Length = 280 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R + +R KL ++ TG + + +S++E G+ + ++ +A L Sbjct: 97 QRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGL 156 Query: 78 WKLLK 82 K Sbjct: 157 DHFFK 161 >gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R +RK+ ++ +++ G +Q S E G+ I++D + ++ L+ + + Sbjct: 8 KIVGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELGEMRIHVDTLYSISEILELDIQE 67 Query: 80 LL 81 L+ Sbjct: 68 LM 69 >gi|254461674|ref|ZP_05075090.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678263|gb|EDZ42750.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 466 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ + R++R + LTQK+ + G + +++++E K I+ ++ LA + Sbjct: 4 QKIYAGSKLRDLRGQVSLTQKDFAAKLGVSLPYLNQMENNKRPISTTVVLALAQEFGFDV 63 Query: 78 WKL 80 +L Sbjct: 64 TEL 66 >gi|77165129|ref|YP_343654.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433736|ref|ZP_05047244.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27] gi|76883443|gb|ABA58124.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207090069|gb|EDZ67340.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27] Length = 76 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 M N + +R A LTQ ++ QS +S++E ++ +I + + +A LD + Sbjct: 1 MSVGKNIKGLRIAAGLTQTQLAKEARINQSGLSKIEREENESITLPTLRKIAKALDCSVV 60 Query: 79 KLLK 82 LL+ Sbjct: 61 ALLE 64 >gi|42784215|ref|NP_981462.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42740146|gb|AAS44070.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 79 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 32/65 (49%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63 Query: 77 LWKLL 81 + ++ Sbjct: 64 VEEIF 68 >gi|84496904|ref|ZP_00995758.1| helix-turn-helix motif protein [Janibacter sp. HTCC2649] gi|84383672|gb|EAP99553.1| helix-turn-helix motif protein [Janibacter sp. HTCC2649] Length = 115 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R+E T +++ + ++SE+E G + + + + LD P+ Sbjct: 20 RHELGEVLRERRQEQGRTLRDVAAAGAVSLGYLSEVERGVKEASSELLGAICDALDIPMS 79 Query: 79 KLLK 82 +L+ Sbjct: 80 LVLE 83 >gi|189499832|ref|YP_001959302.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] gi|189495273|gb|ACE03821.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] Length = 108 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTIN 62 RK E L ++F RK++ +TQ+ + N+ G +S IS LE G K + Sbjct: 27 RKEYEALEPKYALIRELLFA------RKQSGMTQEAVANKIGTTKSAISRLEAGSKHAPS 80 Query: 63 IDNMIILAHTLDTPLWKLLKP 83 I + A + L L+P Sbjct: 81 ITTLRKYAEAVGCDLVIKLEP 101 >gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317] gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium] gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317] Length = 153 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R + TQ+ + + + IS+ E K+T +I+ + + T + +L Sbjct: 4 LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSIL 63 >gi|332666273|ref|YP_004449061.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335087|gb|AEE52188.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 173 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + E N R +RK L+Q+E+ + G + I+ E G + + N++ ++ Sbjct: 4 MVESTYLDKNIRFLRKRMNLSQEELACKIGLNRGNIASYENGSAEPKVCNLLRISRLFGV 63 Query: 76 PLWKLLK 82 + L + Sbjct: 64 SICDLAQ 70 >gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 168 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 6 KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|296269222|ref|YP_003651854.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092009|gb|ADG87961.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 432 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ L+Q ++ + + S++S +E+GK T + ++A L L L+ Sbjct: 8 GERIKMLRKQRGLSQAQLAH-PELSDSYVSLIESGKRTPTPAVLELIAQKLGCSLTYLI 65 >gi|302382071|ref|YP_003817894.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192699|gb|ADL00271.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 69 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 21/36 (58%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57 + + IR EA LTQ E+ +R G ++ I+ +E G Sbjct: 6 LGSRLKEIRTEAGLTQAELADRAGVSRKTINTVENG 41 >gi|172036813|ref|YP_001803314.1| transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171698267|gb|ACB51248.1| probable transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 532 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 +++++ E + + RK L+Q+ + + G +QSWI +LE G+ Sbjct: 462 KQRKNSRKSRSKKTPE--LSAKQILDARKRKGLSQRALAKQIGKSQSWIRDLENGR 515 >gi|159905609|ref|YP_001549271.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159887102|gb|ABX02039.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 212 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 12 SDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + ER I +N N + R++ K+TQ ++ +G +QS +S LE GK I Sbjct: 3 DKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 54 >gi|150402616|ref|YP_001329910.1| XRE family transcriptional regulator [Methanococcus maripaludis C7] gi|150033646|gb|ABR65759.1| putative transcriptional regulator, XRE family [Methanococcus maripaludis C7] Length = 218 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 12 SDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + ER I +N N + R++ K+TQ ++ +G +QS +S LE GK I Sbjct: 9 DKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 60 >gi|134099568|ref|YP_001105229.1| SARP family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912191|emb|CAM02304.1| putative transcriptional activator of the SARP family [Saccharopolyspora erythraea NRRL 2338] Length = 544 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +P+++R R +R A LT + + R +QS IS++E G+ Sbjct: 256 VPQQRRSADDQPAVPSGAPSGVAAELRRLRIAAGLTGERLSARARMSQSKISKIENGRQP 315 Query: 61 INIDNMIILAHTLDTPL 77 + ++ L LD Sbjct: 316 ASPGDVERLLLALDASP 332 >gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 69 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ N R E TQ+E+ R G ++ I+ LE K ++ +A+ + + Sbjct: 3 LLLHNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITD 62 Query: 80 LL 81 + Sbjct: 63 VF 64 >gi|49082594|gb|AAT50697.1| PA2312 [synthetic construct] Length = 194 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 D ++ +R +N +R + L+ + +G +++ ++++E+G+S +I + Sbjct: 2 HTEPDDLIGQR--VAHNLPRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 59 Query: 69 LAHTLDTPLWKLL 81 +A L + L Sbjct: 60 IAQGLKVSVAAFL 72 >gi|163938382|ref|YP_001643266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229056228|ref|ZP_04195651.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] gi|163860579|gb|ABY41638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228721115|gb|EEL72650.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] Length = 64 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R ++Q + ++ ++ I+ +E K ++ LA L T + KL Sbjct: 3 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|329732814|gb|EGG69161.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 77 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ +Q+E N ++ +S+ E+ K+ ++D +I ++ L L+ Sbjct: 3 LAEAIKEQRELKGWSQEESANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|327254477|gb|EGE66099.1| helix-turn-helix family protein [Escherichia coli STEC_7v] Length = 237 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F A ++Q ++ + G +Q I ++ +GK+ + M+ LA+ L Sbjct: 4 KTFAERLNAAMSLAGVSQSQLADMVGISQPAIQKMSSGKTNGS-RKMVELANALKVRPEW 62 Query: 80 L 80 L Sbjct: 63 L 63 >gi|325261432|ref|ZP_08128170.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032886|gb|EGB94163.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 68 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ ++R + LTQK+I + G + E G TI ID +I LA T Sbjct: 1 MYFKRLEDLRVDHDLTQKQIADHLGIQREVYRRYEKGTHTIPIDYLIKLADLYKTS 56 >gi|307276550|ref|ZP_07557668.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506660|gb|EFM75812.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 418 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R R+E TQ+ + + G ++S +S++E G ++ + + ++ +L Sbjct: 3 QVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLILDSLQ 61 >gi|302327864|gb|ADL27065.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 75 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R + + +R TQ+++ ++ G + +S +E GK I LA+ L T Sbjct: 11 ARSTPAESLKLLRTTFGYTQQQLADKAGITKQQVSAMERGKEPIGRKMAHRLANALGTSY 70 Query: 78 WKLL 81 L Sbjct: 71 KNLF 74 >gi|295093800|emb|CBK82891.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 98 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 28/71 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 D + + F + RK +++ ++ + A +I+ +E ++ + L Sbjct: 4 DKVKYDFKAFRQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYKLVTL 63 Query: 73 LDTPLWKLLKP 83 LD + + P Sbjct: 64 LDVSVDQFFFP 74 >gi|261823599|ref|YP_003261705.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607612|gb|ACX90098.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 108 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68 + + R IF ++ R L+QK + G A + I+ E G +I+ Sbjct: 2 NTRQQHRDIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVYEASIETAQQ 61 Query: 69 LAHTLDTPL 77 LA LD PL Sbjct: 62 LAEALDVPL 70 >gi|212709444|ref|ZP_03317572.1| hypothetical protein PROVALCAL_00484 [Providencia alcalifaciens DSM 30120] gi|212687959|gb|EEB47487.1| hypothetical protein PROVALCAL_00484 [Providencia alcalifaciens DSM 30120] Length = 112 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R IRKE ++ E+ + +Q +S E G + ++D + ++ LD P +++K Sbjct: 26 IREIRKENGISAHELAKKINISQQQMSRYELGITKFSLDMLFNISVALDIPFERIIK 82 >gi|254428930|ref|ZP_05042637.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195099|gb|EDX90058.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R LTQ+++ + +S IS E G+ + + L L L Sbjct: 11 MSFPERLKAARLALGLTQEQLGDELHVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDH 70 Query: 80 LL 81 L+ Sbjct: 71 LI 72 >gi|163816219|ref|ZP_02207586.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC 27759] gi|158448414|gb|EDP25409.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC 27759] Length = 70 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R RKE K TQ I TGF+ S+IS+LE GK+T I I + + L Sbjct: 5 DSKSLGEAIRIRRKELKYTQAYIAEFTGFSVSFISDLERGKATAEIGKAITIINLLGM 62 >gi|149909139|ref|ZP_01897797.1| hypothetical protein PE36_17760 [Moritella sp. PE36] gi|149807890|gb|EDM67835.1| hypothetical protein PE36_17760 [Moritella sp. PE36] Length = 68 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE +++Q ++ +S++ +E G+ I ++ + +A L+ LL Sbjct: 8 VGLKIKVRRKEMRVSQDKLALLADIDRSYVGRIERGEVNITLEKLYQIAEVLECDAKGLL 67 >gi|21219736|ref|NP_625515.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|9716113|emb|CAC01451.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 489 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R++R+ A LTQ ++ R G+ S +S LE G + + L L+T Sbjct: 31 FGRQLRSLRRAAGLTQLQLGLRVGYHHSVVSRLEAGLREPPVGLVRRLDAVLET 84 >gi|328956460|ref|YP_004373846.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4] gi|328672784|gb|AEB28830.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4] Length = 183 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ + R LTQ++I + + +S E K+ NI + L++ + + Sbjct: 1 MSLGHSLKKARAATNLTQEDIAKKLYVTRQTVSRWEQNKTLPNIFVLQELSNLYGLSIDE 60 Query: 80 LL 81 L+ Sbjct: 61 LI 62 >gi|329117364|ref|ZP_08246081.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907769|gb|EGE54683.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 91 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R A L+Q+++ + QS I+ +E G +I+ M +A ++ L Sbjct: 38 KARSNAGLSQRQLAELSHVPQSTIARIERG-HNTSIETMSKIAVAVNQEL 86 >gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1] Length = 233 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTINIDNMIILAHTLDT 75 N ++ RK LTQK++ + G +QS S+LE+GKS + LAH Sbjct: 5 NRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRA-VELAHLFGV 56 >gi|326564808|gb|EGE15019.1| putative phage represso [Moraxella catarrhalis 103P14B1] Length = 109 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTINIDNMIILAHTLDT 75 N ++ RK LTQK++ + G +QS S+LE+GKS + LAH Sbjct: 5 NRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRA-VELAHLFGV 56 >gi|323466842|gb|ADX70529.1| Putative uncharacterized protein [Lactobacillus helveticus H10] Length = 292 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A LTQ E+ ++S+ S++E G I+ D ++ + + Sbjct: 4 GKLLRETRLVAGLTQTEMAAGA-ISESFYSKVERGVHNIDADTLVEVLKANHIDPVQFF 61 >gi|264676235|ref|YP_003276141.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262206747|gb|ACY30845.1| transcriptional regulator, XRE family with [Comamonas testosteroni CNB-2] Length = 300 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R LT++ + + ++ ++ LE G ++I + +AH L + +LL Sbjct: 26 LGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQIAHALQCSMAELL 85 >gi|311744183|ref|ZP_07717988.1| XRE family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312538|gb|EFQ82450.1| XRE family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 100 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R + LT +++ R + +ISE+E G+ + + + LA LD PL Sbjct: 5 RQLVGEVLRARRLDEGLTLRDVSARARVSLGYISEVERGQKEPSSELLAALAAALDVPLS 64 Query: 79 KLL 81 K+L Sbjct: 65 KVL 67 >gi|320009363|gb|ADW04213.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 280 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP K+ D R + R+ R+ A L+Q+++ + S+I +LE G Sbjct: 1 MPGPKK-----LDPSASPRALLGAELRHRRETAGLSQEDLGAPLFVSGSFIGQLEAGTRR 55 Query: 61 INIDNMIILAHTLD 74 + D L L Sbjct: 56 MQADQAARLDEVLG 69 >gi|271962441|ref|YP_003336637.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505616|gb|ACZ83894.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 99 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R R++ LTQ E+ RTG Q ++ E G + I + LA L+ L Sbjct: 30 RFELGEAVRLRREQLGLTQSELAERTGLKQPAVARFEAGGTMPTIPMLERLAEALEMRLS 89 Query: 79 KLLKP 83 +P Sbjct: 90 VQFQP 94 >gi|228988281|ref|ZP_04148376.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158633|ref|ZP_04286691.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|229169747|ref|ZP_04297447.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|229175726|ref|ZP_04303232.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228607677|gb|EEK64993.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228613786|gb|EEK70911.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|228624617|gb|EEK81386.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|228771453|gb|EEM19924.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 79 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 33/66 (50%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +AH + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|196038079|ref|ZP_03105389.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031349|gb|EDX69946.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 67 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRTKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|167761093|ref|ZP_02433220.1| hypothetical protein CLOSCI_03491 [Clostridium scindens ATCC 35704] gi|167661327|gb|EDS05457.1| hypothetical protein CLOSCI_03491 [Clostridium scindens ATCC 35704] Length = 374 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R+E ++TQ+E+ N G ++ +S+ ET +S +I + ++A + +LL Sbjct: 6 LAENLIRLRREKEVTQEEVANFIGVTKASVSKWETKQSLPDILLLPVIASYYGVTVDELL 65 >gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 200 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE TQ+++ N + +S+ E G ++ + L+ L L ++L Sbjct: 6 VGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENGFGCPDVSLLGELSIVLGVDLEQML 65 Query: 82 K 82 K Sbjct: 66 K 66 >gi|153822286|ref|ZP_01974953.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae B33] gi|16197752|gb|AAK95990.1| unknown [Vibrio cholerae O1 biovar El Tor] gi|126520182|gb|EAZ77405.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae B33] gi|223972392|dbj|BAH23423.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae O1 biovar El tor] gi|259156102|gb|ACV96050.1| membrane associated protein containing xre-family DNA-binding HTH domain [Providencia alcalifaciens Ban1] gi|259156265|gb|ACV96212.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae Ban5] gi|259156445|gb|ACV96390.1| membrane associated protein containing xre-family DNA-binding HTH domain [Vibrio cholerae Ind5] Length = 136 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ +Q+++ +G + I +E+G +I+++ LA + + KLL+ Sbjct: 2 IKKLRERKNWSQEQLATMSGLSVRTIQRIESGNK-ASIESLKSLASVFEVDISKLLE 57 >gi|72162305|ref|YP_289962.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71916037|gb|AAZ55939.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 128 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R IR A L+ + + G+ S +S+LE G+ T +++++ A P Sbjct: 27 LGARLREIRVAAGLSGRALAQALGWHPSKVSKLELGRQTASVEDLKAWAGACGAP 81 >gi|49183405|ref|YP_026657.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479896|ref|YP_034718.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144853|ref|YP_081974.1| PbsX family transcriptional regulator [Bacillus cereus E33L] gi|65317820|ref|ZP_00390779.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|222094186|ref|YP_002528243.1| transcriptional regulator, pbsx family [Bacillus cereus Q1] gi|228913138|ref|ZP_04076777.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925643|ref|ZP_04088732.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931891|ref|ZP_04094787.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944196|ref|ZP_04106575.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089510|ref|ZP_04220779.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42] gi|229120049|ref|ZP_04249304.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201] gi|229137252|ref|ZP_04265869.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26] gi|229182776|ref|ZP_04310016.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1] gi|229194768|ref|ZP_04321557.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293] gi|49177332|gb|AAT52708.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49331452|gb|AAT62098.1| transcriptional regulator, PBSX family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978322|gb|AAU19872.1| transcriptional regulator, PBSX family [Bacillus cereus E33L] gi|221238241|gb|ACM10951.1| transcriptional regulator, PBSX family [Bacillus cereus Q1] gi|228588711|gb|EEK46740.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293] gi|228600749|gb|EEK58329.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1] gi|228646247|gb|EEL02464.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26] gi|228663515|gb|EEL19100.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201] gi|228693817|gb|EEL47511.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42] gi|228815585|gb|EEM61827.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827871|gb|EEM73609.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834121|gb|EEM79669.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846543|gb|EEM91556.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 83 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 14 QVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73 Query: 76 PLWKLL 81 + KL Sbjct: 74 TVDKLF 79 >gi|328956456|ref|YP_004373842.1| transcriptional regulator [Carnobacterium sp. 17-4] gi|328672780|gb|AEB28826.1| transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + L+Q+++ + + IS +E G I+ + LD L L Sbjct: 6 RLKAARAKNDLSQQQLADAVNVTRQTISAIERGDYNPTINLCREICKKLDLTLNDLF 62 >gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670] Length = 229 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK ++T E+ R +S LE G + + +A L P+ +L Sbjct: 4 GEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGYSDTLIQKIAEALGVPVAELF 62 >gi|308176372|ref|YP_003915778.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743835|emb|CBT74807.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 187 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ ++T ++ +G + ++S +E ++ ++ ++ L L + L + Sbjct: 16 GARLRGVRQTQRMTIDQVAELSGLTKGFLSRVERDLTSPSVSTLLRLCEVLSIEVGTLFE 75 >gi|306824544|ref|ZP_07457890.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306830126|ref|ZP_07463310.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427652|gb|EFM30748.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433331|gb|EFM36301.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 64 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE ++Q ++ G ++ I+ +E K ++ + LA +L T L L Sbjct: 2 NRVKEFRKELGISQLDLAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|229156920|ref|ZP_04285001.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] gi|228626410|gb|EEK83156.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] Length = 374 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65 >gi|269124926|ref|YP_003298296.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309884|gb|ACY96258.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 145 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ AK++ +++ + +G + ++S++E G + + + +A L L Sbjct: 10 GEYIREQRQRAKISLRQLADVSGISNPYLSQIERGLRKPSAEILQQIAKGLRISAEAL 67 >gi|196037572|ref|ZP_03104883.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|218235301|ref|YP_002365690.1| hypothetical protein BCB4264_A0957 [Bacillus cereus B4264] gi|296501634|ref|YP_003663334.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296506639|ref|YP_003667873.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|196031814|gb|EDX70410.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|218163258|gb|ACK63250.1| conserved domain protein [Bacillus cereus B4264] gi|296322686|gb|ADH05614.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296327226|gb|ADH10153.1| Transcriptional regulator [Bacillus thuringiensis BMB171] Length = 65 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + R E LTQ+E+ + I +E K ++ I +A +LD L +L Sbjct: 4 SKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDELF 61 >gi|153954990|ref|YP_001395755.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855434|ref|YP_002472556.1| hypothetical protein CKR_2091 [Clostridium kluyveri NBRC 12016] gi|146347848|gb|EDK34384.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569158|dbj|BAH07142.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + + R R++ LT++ + +I +LE G+ +++ ++ +A++ Sbjct: 3 KINIINKQEMGIRIRENREKLDLTRERFAEIVDLSALYIGQLERGERQMSLTALVKIANS 62 Query: 73 LDTPLWKLL 81 L L+ Sbjct: 63 LCVTTDYLI 71 >gi|88705884|ref|ZP_01103593.1| transcription regulator protein [Congregibacter litoralis KT71] gi|88699955|gb|EAQ97065.1| transcription regulator protein [Congregibacter litoralis KT71] Length = 95 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+Q+ + + +++++S LE + + + L ++ LL Sbjct: 7 LARALKAVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLSKLAELCEVMEVHPLTLL 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|308270263|emb|CBX26875.1| hypothetical protein N47_A09040 [uncultured Desulfobacterium sp.] Length = 114 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R+ KLTQ E+ + G QS ++ LE ++ LA + + +LL Sbjct: 58 IKAWREYLKLTQSELAAKAGMKQSALARLENNTVNPRKSTLLNLAKAMGISVEQLL 113 >gi|299533429|ref|ZP_07046811.1| anaerobic benzoate catabolism transcriptional regulator [Comamonas testosteroni S44] gi|298718635|gb|EFI59610.1| anaerobic benzoate catabolism transcriptional regulator [Comamonas testosteroni S44] Length = 295 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R LT++ + + ++ ++ LE G ++I + +AH L + +LL Sbjct: 21 LGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQIAHALQCSMAELL 80 >gi|294497869|ref|YP_003561569.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|294347806|gb|ADE68135.1| probable transcriptional regulator SinR [Bacillus megaterium QM B1551] Length = 111 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + +N+R + + + ++S++S LE G + ++ + +A +L T + + Sbjct: 1 MIGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNNNPSLQMLDKIASSLHTTIDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 177 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R+ +Q ++ +G I + E G D + +A L Sbjct: 1 MVGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALG 54 >gi|206972991|ref|ZP_03233913.1| dna-binding protein [Bacillus cereus AH1134] gi|229194134|ref|ZP_04320999.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206731875|gb|EDZ49075.1| dna-binding protein [Bacillus cereus AH1134] gi|228589350|gb|EEK47304.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK A LT K + S +S++E G + ++ + +++ L+ L+ Sbjct: 7 GEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIALFNFF 65 >gi|167032792|ref|YP_001668023.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859280|gb|ABY97687.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 184 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83 +RK LT E+ R + ++S++E G S + ++ ++ L + L KP Sbjct: 17 LRKFKNLTLGELAERINRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74 >gi|115375505|ref|ZP_01462764.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1] gi|310818115|ref|YP_003950473.1| lambda repressor-like, DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|115367460|gb|EAU66436.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1] gi|309391187|gb|ADO68646.1| Lambda repressor-like, DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 125 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A LTQ ++ R G A +E GK +I ++ L L + +L+ Sbjct: 9 VGEASRQARMRAGLTQADVAERIGVATEVYGRMERGKMLPSISTLLRLCVVLRSGPDELM 68 >gi|58696656|ref|ZP_00372210.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58699194|ref|ZP_00374006.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630362|ref|YP_002727153.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630756|ref|YP_002727547.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|58534290|gb|EAL58477.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58537180|gb|EAL60282.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592343|gb|ACN95362.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592737|gb|ACN95756.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 302 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R E TQK++ + G I + E G I+I+ + + L + L+ Sbjct: 13 VGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G++ + +D + +A L + LL Sbjct: 165 GKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 223 >gi|332523396|ref|ZP_08399648.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314660|gb|EGJ27645.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 113 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LTQ+++ + +++ +LE + + + + + L+ + Sbjct: 12 KRIRLLRLNKGLTQEQLEEKADLGTNYVYKLENQSTNVKVKTLEKVMKALEVDFEEFF 69 >gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183] gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175] gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183] gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175] Length = 233 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK LTQ ++ + G + IS+ E+G ++ +N+ LA L Sbjct: 2 KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 80 LL 81 L+ Sbjct: 62 LM 63 >gi|270284600|ref|ZP_05966400.2| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium gallicum DSM 20093] gi|270276519|gb|EFA22373.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium gallicum DSM 20093] Length = 70 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 28/47 (59%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R+EA L+Q+E+ R+G +++ ++ +E G+ ++ + LA + Sbjct: 17 AREEAHLSQEELAKRSGVSRATVNRIERGRIMPLLNTLEKLAKAMGK 63 >gi|169343406|ref|ZP_02864410.1| regulator SinR [Clostridium perfringens C str. JGS1495] gi|169298492|gb|EDS80578.1| regulator SinR [Clostridium perfringens C str. JGS1495] Length = 204 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82 R++ +++ ++ G + ++I++LE G KS +++ I +A+ L+ P+ L+ Sbjct: 11 REKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITVFLE 64 >gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195] gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195] gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678] Length = 233 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK LTQ ++ + G + IS+ E+G ++ +N+ LA L Sbjct: 2 KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 80 LL 81 L+ Sbjct: 62 LM 63 >gi|42520475|ref|NP_966390.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410214|gb|AAS14324.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 302 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ R E TQK++ + G I + E G I+I+ + + L + L+ Sbjct: 13 VGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + IS E G++ + +D + +A L + LL Sbjct: 165 GKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 223 >gi|89096020|ref|ZP_01168913.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] gi|89088874|gb|EAR67982.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL B-14911] Length = 192 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 25/47 (53%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 IRK KLTQ+ + + +++ +++E+G + + +A L+ Sbjct: 12 KIRKARKLTQETVATKAFIDRAYYAQIESGVRNPSEEIRQKIAQILN 58 >gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937] gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 188 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R+ + ++ + +++ I ++E G+S+ + + L+ + LL Sbjct: 12 AARIRSERENRGWSLSDLAEKASVSRAMIHKIERGESSPTANLLGKLSGAFGLSMSTLL 70 >gi|302387998|ref|YP_003823820.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198626|gb|ADL06197.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 93 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + + +RK TQ+ + IS++E G + + ++MI+ + L Sbjct: 4 DQHVCGARIQELRKSKGYTQEALAEAIDIDAKRISKIERGVISASYNDMILFSEFFGVTL 63 Query: 78 WKLL 81 L+ Sbjct: 64 DYLI 67 >gi|291008898|ref|ZP_06566871.1| regulator [Saccharopolyspora erythraea NRRL 2338] Length = 456 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Query: 8 EPHLSDA--ILRERMIFVNN-----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 P D R N ++ +R+ ++Q++I TG +QS +SE+ G+ Sbjct: 9 SPVTPDVWNERPMRDALANRNISEVYKQLRR-HGVSQRQIAASTGQSQSEVSEILKGRQV 67 Query: 61 INIDNMIILAHTLDTP 76 + D + +A L P Sbjct: 68 MAYDVLARIADGLGIP 83 >gi|259417621|ref|ZP_05741540.1| conserved domain protein [Silicibacter sp. TrichCH4B] gi|259346527|gb|EEW58341.1| conserved domain protein [Silicibacter sp. TrichCH4B] Length = 77 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 NN + +R+ A +Q E+ R ++ ++ LE G+ ++ +A + + ++ +P Sbjct: 16 NNIQELRQIAGWSQAELAKRLNVSRQTVNALERGRYDPSLPLAFAIAQLFERQIEQVFQP 75 >gi|260856429|ref|YP_003230320.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257755078|dbj|BAI26580.1| predicted phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 235 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F A ++Q ++ + G +Q I ++ +GK+ + M+ LA+ L Sbjct: 2 KTFAERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGS-RKMVELANALKVRPEW 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 31/57 (54%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 MI N+ + +RKE TQ+++ +R G ++ I + E + + N+I LA L+ Sbjct: 1 MIRGNDLKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYSPVGQNLISLAKALNVS 57 >gi|226949688|ref|YP_002804779.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226842029|gb|ACO84695.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 82 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+F + + +R++ LTQ +I N +S ++ E G +I ++ +A + L Sbjct: 1 MVFKDRLKGLREDRDLTQDQIANILKITRSAVANYENGIREPDISLLVKIADYFNISLDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|225020807|ref|ZP_03709999.1| hypothetical protein CORMATOL_00815 [Corynebacterium matruchotii ATCC 33806] gi|224946405|gb|EEG27614.1| hypothetical protein CORMATOL_00815 [Corynebacterium matruchotii ATCC 33806] Length = 92 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 27/51 (52%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R+ A + Q ++ ++TG +++ I+ +ETG++ + I+A Sbjct: 19 RVKLAREYAGMQQHDLADKTGLSRTSIANMETGRTKPRKKTITIIASATGV 69 >gi|126669133|ref|ZP_01740061.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17] gi|126626403|gb|EAZ97072.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17] Length = 96 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L+E ++ +R +A LTQ+++ + G ++S IS LE G+ + + A Sbjct: 22 ALQEEFNLIDQLITMRTKAGLTQEDLAKKLGTSKSNISRLERGRGNPSWGTLSKYAAACG 81 >gi|126643291|ref|YP_001086275.1| putative transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 160 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 26/45 (57%) Query: 38 KEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 E+ R G A+S +S+LE G+ +I+ + L L+ P +L++ Sbjct: 2 AEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARLME 46 >gi|37525095|ref|NP_928439.1| hypothetical protein plu1127 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525319|ref|NP_928663.1| hypothetical protein plu1363 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527554|ref|NP_930898.1| hypothetical protein plu3690 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527562|ref|NP_930906.1| hypothetical protein plu3698 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784521|emb|CAE13421.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784746|emb|CAE13656.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786989|emb|CAE16063.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786997|emb|CAE16071.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 112 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + RKE TQ+++ ++ G S E G S ID +A L+ Sbjct: 1 MSFSDKLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADM 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|117922490|ref|YP_871682.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117614822|gb|ABK50276.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 510 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 +++R+ RN+RK LT +++ R + S++S +E GK + + Sbjct: 4 DQSLMRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAE 63 Query: 65 NMIILAHTLDT 75 + ++A Sbjct: 64 MLAVIATVFQK 74 >gi|292557970|gb|ADE30971.1| DNA-binding protein [Streptococcus suis GZ1] Length = 179 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE KLTQ E+ + G +S ETG ++ + L+ + ++L Sbjct: 7 GSFLAELRKEQKLTQAELGEKLGVTNKTVSRWETGIYMPPVEILEELSRLYGLTINEIL 65 >gi|261208044|ref|ZP_05922719.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565525|ref|ZP_06445973.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|260077628|gb|EEW65344.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162723|gb|EFD10575.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] Length = 87 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKE L+Q E+ + Q +S +TG++ M +L+ L P+ +L Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 78 >gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 L + R R AK++ +++ G + ++S++E G + + + +A L Sbjct: 2 ALPKVGSIGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERGLRKPSAEILNQIAKGLH 61 Query: 75 TP 76 Sbjct: 62 IS 63 >gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 142 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+ LTQK++ + G +Q I E+ + D + LA L Sbjct: 1 MIGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSISADYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|225859745|ref|YP_002741255.1| transcriptional activator [Streptococcus pneumoniae 70585] gi|225721901|gb|ACO17755.1| transcriptional activator [Streptococcus pneumoniae 70585] Length = 299 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|254515458|ref|ZP_05127518.1| conserved domain protein [gamma proteobacterium NOR5-3] gi|219675180|gb|EED31546.1| conserved domain protein [gamma proteobacterium NOR5-3] Length = 394 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RK ++ + + G + IS ETGK + +A L+ P Sbjct: 8 VGERLTQARKARGVSAGDFADMVGLDRVTISRYETGKMDPKPSTIYKMAEALNFP 62 >gi|171914342|ref|ZP_02929812.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136] Length = 286 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 F + +R LTQ++ + + ++ +LE GK + +++++L ++ Sbjct: 3 FSERLKALRTRLGLTQRDFAEKLKLSVGYVYQLEAGKRAPS-ESLLVLLDLIEKE 56 >gi|169334235|ref|ZP_02861428.1| hypothetical protein ANASTE_00633 [Anaerofustis stercorihominis DSM 17244] gi|169258952|gb|EDS72918.1| hypothetical protein ANASTE_00633 [Anaerofustis stercorihominis DSM 17244] Length = 75 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK+ L Q+ + ++ IS +E GK +++ +A D + ++ Sbjct: 6 NKVEELRKKIGLNQENFAKQLSVSRQTISSIENGKYNPSLELAFEIADFFDKRIEEVF 63 >gi|167771912|ref|ZP_02443965.1| hypothetical protein ANACOL_03285 [Anaerotruncus colihominis DSM 17241] gi|167665710|gb|EDS09840.1| hypothetical protein ANACOL_03285 [Anaerotruncus colihominis DSM 17241] Length = 142 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79 I R RK+ LTQ + N ++S++S E G + +A ++ T + + Sbjct: 12 IVGKKIRLYRKKVGLTQSQFANECFMSESYVSRFERGLVDNPTQATLEHIATSIGTTVPE 71 Query: 80 LLK 82 L++ Sbjct: 72 LIR 74 >gi|149012422|ref|ZP_01833453.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147763478|gb|EDK70414.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] Length = 299 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|172061648|ref|YP_001809300.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994165|gb|ACB65084.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 227 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|159901080|ref|YP_001547327.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894119|gb|ABX07199.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 143 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F +R TQ+ + +R ++ IS E G +T + +I+LA + Sbjct: 3 ESFGQRLGRLRALHGWTQQALADRLALSRVAISHFEMGLATPSERTVILLAGLFRLEPHE 62 Query: 80 LL 81 L+ Sbjct: 63 LV 64 >gi|26988901|ref|NP_744326.1| transcriptional regulator, putative [Pseudomonas putida KT2440] gi|24983711|gb|AAN67790.1|AE016410_6 transcriptional regulator, putative [Pseudomonas putida KT2440] Length = 184 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83 +RK LT E+ R + ++S++E G S + ++ ++ L + L KP Sbjct: 17 LRKFKNLTLGELAERIDRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74 >gi|9633025|ref|NP_050133.1| hypothetical protein phiadhp25 [Lactobacillus phage phiadh] gi|5730282|emb|CAB52503.1| hypothetical protein [Lactobacillus phage phiadh] Length = 112 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N +N+R ++Q E+ N+ + IS E+G + LA + + L Sbjct: 2 NRIKNLRIANNISQAELGNKVNASNQAISAYESGFRNPKPETWQALADFFNVSVPYL 58 >gi|113972178|ref|YP_735971.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113886862|gb|ABI40914.1| transcriptional regulator, XRE family [Shewanella sp. MR-4] Length = 510 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 +++R+ RN+RK LT +++ R + S++S +E GK + + Sbjct: 4 DQSLMRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAE 63 Query: 65 NMIILAHTLDT 75 + ++A Sbjct: 64 MLAVIATVFQK 74 >gi|107023625|ref|YP_621952.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690710|ref|YP_836333.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734053|ref|YP_001766000.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893814|gb|ABF76979.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116648799|gb|ABK09440.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169817295|gb|ACA91878.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 228 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|330960122|gb|EGH60382.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 116 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+ F + + +R+ + + Q + G +QS IS LE G+S++ ++ + +A L+ Sbjct: 3 RIAFASALQFMRRHSSVLQADFE--GGVSQSHISRLERGESSVTLERLEEIAAHLNVHPL 60 Query: 79 KLL 81 L+ Sbjct: 61 SLI 63 >gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] Length = 154 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +++ RK+ +TQ+++ + G + IS+ ETGK + + L L+ + Sbjct: 3 QLVIGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEITVA 62 Query: 79 KLL 81 +L Sbjct: 63 ELF 65 >gi|329117294|ref|ZP_08246011.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907699|gb|EGE54613.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 112 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + IL+E R +R E +TQ+++ + +++ +LE + I + + + Sbjct: 1 MDNKILQE--YISKRIRLLRLERGMTQEQLEEKADLGTNYVYKLENQSTNIKVKTLEKVM 58 Query: 71 HTLDT 75 L+ Sbjct: 59 KALEV 63 >gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 94 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR++ +Q +I G + IS E K+ ++ ++I LA L +L Sbjct: 1 MLGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|319936560|ref|ZP_08010974.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808358|gb|EFW04918.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 110 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RKE L+Q+++ + ++ +S+ E +S +I N++ ++ LLK Sbjct: 5 EKLLQLRKERGLSQQQLAEQLDVSRQSVSKWELNESIPDIQNIVAMSELFHVSTDYLLK 63 >gi|293394371|ref|ZP_06638671.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291423349|gb|EFE96578.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 200 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK KL+ E+ R G ++ + E+E G + +I + +A L + ++ Sbjct: 30 RKGQKLSLDELARRAGVSKGMLVEIEKGSANPSIAILCKIAAALGLSVADIV 81 >gi|312195300|ref|YP_004015361.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311226636|gb|ADP79491.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 261 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 31/58 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ R+ +L+Q E+ N+ + +S +ETG+S + ++ L+ LD PL + Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMILRLSERLDVPLRE 68 >gi|257456419|ref|ZP_05621615.1| helix-turn-helix domain protein [Treponema vincentii ATCC 35580] gi|257446079|gb|EEV21126.1| helix-turn-helix domain protein [Treponema vincentii ATCC 35580] Length = 120 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R N R R K TQ ++ R ++ +IS +ETG+ I+ ILA + Sbjct: 57 KRQTPANTLRFYRNLHKFTQAQLAERLHTSRQFISNMETGQKPISRKTANILAEIFNI 114 >gi|251778460|ref|ZP_04821380.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082775|gb|EES48665.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 432 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ + IS +E+G+S ++D + LA TL+ + Sbjct: 2 EILSLGEKIKTRRKELNMTLKDLA-KNRITPGQISLIESGRSNPSMDLLEYLAATLNISI 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EHLME 65 >gi|299529959|ref|ZP_07043386.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298721939|gb|EFI62869.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 98 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK A++TQ ++ R G ++ + ETG + +A L+ L Sbjct: 9 LAQARKAARITQADLAERAGLSRMAVQRTETGDVDPRFSTLQEMARVLNMEL 60 >gi|291517925|emb|CBK73146.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R TQKEI N+ G +S+ E GKS +I + ++ L + +L+ Sbjct: 7 GKLIKNARLSKGYTQKEIANKLGVTDKAVSKWECGKSFPDITMIESISRELGISVNQLV 65 >gi|254293850|ref|YP_003059873.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042381|gb|ACT59176.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 474 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ + R R + ++TQK + S++++LE + + ++ LA T L Sbjct: 10 KLFIGHKIREARLKNQMTQKAFAEALNVSTSYLNQLENNQRHVTAGILLALAQTFGLDLK 69 Query: 79 KL 80 L Sbjct: 70 TL 71 >gi|227523447|ref|ZP_03953496.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227089374|gb|EEI24686.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290] Length = 117 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + +Q+++ + + IS E G S ++ N+ +L+ D PL +K Sbjct: 7 QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVK 64 >gi|148273208|ref|YP_001222769.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831138|emb|CAN02090.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 102 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T +++ ++ A ++SE+E G+ + + + +A LDTP+ Sbjct: 5 RQEIGDVLRDFRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVAEALDTPIS 64 Query: 79 KLLK 82 +++ Sbjct: 65 VIMR 68 >gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] Length = 255 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 M R+ R + +Q + G +Q+ I ++E + + + LA L Sbjct: 12 SFPIEMTVGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQRS-RALPRLAQCLG 70 Query: 75 TPLWKL 80 L L Sbjct: 71 VDLLTL 76 >gi|89100699|ref|ZP_01173555.1| hypothetical protein B14911_02414 [Bacillus sp. NRRL B-14911] gi|89084574|gb|EAR63719.1| hypothetical protein B14911_02414 [Bacillus sp. NRRL B-14911] Length = 179 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +RK+ LTQ EI +++ S++E+G + + + L+ L Sbjct: 8 RLRKKRNLTQAEIAELIHIDRAYYSQIESGLRNPSEEISRSIGRVLNIDPLLLF 61 >gi|134300926|ref|YP_001114422.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053626|gb|ABO51597.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 152 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF + +R+ LTQ+ + + +S I+ ET K + D + LA + + L Sbjct: 3 IFRKRMKELREGKGLTQQALADALNIGKSAIALYETEKRQPDPDTLKKLAQFFNCSVDYL 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 202 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +RK + TQ+++ S I E + T + D + A D L Sbjct: 1 MSVGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDERTPSPDVLKKYADIFDVSLDY 60 Query: 80 LL 81 +L Sbjct: 61 IL 62 >gi|313905588|ref|ZP_07838950.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469535|gb|EFR64875.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 58 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 29/49 (59%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 MIF + IRK +TQ+++ + G ++ +++ E+G+ +I N+I Sbjct: 1 MIFSEKLQLIRKSKGMTQEDLAEKLGVSRQAVAKWESGQVYPDISNLIQ 49 >gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4] gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 253 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R EA +TQ+++ +G Q IS+LE G+++ D ++ LA L Sbjct: 3 LGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRASETSD-IVSLAKALGV 55 >gi|283834929|ref|ZP_06354670.1| DNA-binding protein [Citrobacter youngae ATCC 29220] gi|291069195|gb|EFE07304.1| DNA-binding protein [Citrobacter youngae ATCC 29220] Length = 74 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R R +TQ E+ G QS+I+++E G+ ++I + L + Sbjct: 8 EYQMVIKALREARVAGHITQDELGKALGRPQSFIAKVENGERRLDIVEFVHLCRLVGIDP 67 Query: 78 WKLL 81 ++ Sbjct: 68 VSII 71 >gi|320007540|gb|ADW02390.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 276 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + R RK L+Q E+ R + IS +ETG+ST + ++ LA LD P+ + Sbjct: 11 GSLLRGWRKLRGLSQLELALRADSSARHISFIETGRSTPSRSMVLHLAEHLDVPVRE 67 >gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 136 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RK +TQ+E+ G S + ET + + +I +A L Sbjct: 1 MLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|254510463|ref|ZP_05122530.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534174|gb|EEE37162.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 431 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R+ A L Q E+ R G + S+++ +E + I ++ +A L L + Sbjct: 7 GSRIRERRQIAGLRQAELARRVGISASYLNLIEHNRRRIGGKVLVDIAAALSVEPSLLTQ 66 >gi|206599924|ref|YP_002241730.1| gp45 [Mycobacterium phage Fruitloop] gi|206287012|gb|ACI12358.1| gp45 [Mycobacterium phage Fruitloop] Length = 119 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ + E+ +G + ++S+LE G N LA L P+ L +P Sbjct: 52 QELRIIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 111 >gi|188588525|ref|YP_001920110.1| helix-turn-helix domain protein [Clostridium botulinum E3 str. Alaska E43] gi|188498806|gb|ACD51942.1| helix-turn-helix domain protein [Clostridium botulinum E3 str. Alaska E43] Length = 432 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ + IS +E+G+S ++D + LA TL+ + Sbjct: 2 EILSLGEKIKTRRKELNMTLKDLA-KNRITPGQISLIESGRSNPSMDLLEYLAATLNISI 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EHLME 65 >gi|182624278|ref|ZP_02952063.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177910496|gb|EDT72869.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 223 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 32/56 (57%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R+++ +TQK + + G A+ +++E+ETG+ IN + ++ L+T L Sbjct: 4 VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59 >gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf] Length = 136 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RK +TQ+E+ G S + ET + + +I +A L Sbjct: 1 MLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|167761483|ref|ZP_02433610.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC 35704] gi|167661149|gb|EDS05279.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC 35704] Length = 80 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 18 ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ +F+ N +RKE + Q+E+ ++ I LE G+ +I L+ Sbjct: 9 KKEVFMKNRLEELRKERGIKQEELAAELEVSRQTIGSLENGRYNPSILLAFKLSKYFGLK 68 Query: 77 LWKLL 81 + + Sbjct: 69 IEDIF 73 >gi|163868999|ref|YP_001610229.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018676|emb|CAK02234.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ R L+QK + N G + I + E G + ++ ++ +A L P+ Sbjct: 21 GARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPI 75 >gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10] Length = 224 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78 + RK AKLTQ ++ R G Q+ IS LE GKS + LA LW Sbjct: 7 IKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGTA-YIAQLAAACGVSALW 59 >gi|148987838|ref|ZP_01819301.1| hypothetical protein CGSSp6BS73_10011 [Streptococcus pneumoniae SP6-BS73] gi|147926302|gb|EDK77375.1| hypothetical protein CGSSp6BS73_10011 [Streptococcus pneumoniae SP6-BS73] Length = 287 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R F ++ IR+ LTQ+E+ +++ +S++E+GK+T +NM L ++ Sbjct: 2 RYDFGKVYKEIRESIGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60 Query: 79 K 79 + Sbjct: 61 E 61 >gi|21910272|ref|NP_664540.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes MGAS315] gi|28876201|ref|NP_795428.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes phage 315.1] gi|28895849|ref|NP_802199.1| repressor C1 [Streptococcus pyogenes SSI-1] gi|21904467|gb|AAM79343.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes phage 315.1] gi|28811098|dbj|BAC64032.1| putative repressor C1 [Streptococcus pyogenes SSI-1] Length = 69 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R+ RK AKL Q ++ Q I +E GK + +++ L + + Sbjct: 5 EFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDD 64 Query: 80 LL 81 L Sbjct: 65 FL 66 >gi|328553992|gb|AEB24484.1| hypothetical protein BAMTA208_11595 [Bacillus amyloliquefaciens TA208] Length = 74 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK LTQ+ + + + +S IS E G ST +++ +A LD + +L Sbjct: 5 KLVNARKAKGLTQENLAEKLMYKKSTISNWENGYSTPKMEDAFKVAEILDCDIKELF 61 >gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 103 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R E LTQKE+ + IS E G++ +ID + L+ + L+ Sbjct: 5 SRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNEPSIDTLKKLSSLFNVSTEYLI 62 >gi|256378649|ref|YP_003102309.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922952|gb|ACU38463.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 271 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ L+Q+ + + +S +ETG + + ++ LA LD P + Sbjct: 21 LRAWRRRKSLSQQGLAEAAAVSARHVSRVETGLAHPTPEMILRLAEHLDVPQPE 74 >gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P ++A + E+ I + +R + + E+ TG + S++S+LETG+ + N+ Sbjct: 16 PASAEAFISEKRI-GERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLAR 74 Query: 69 LAHTLDTPL 77 +A L Sbjct: 75 IAMVFSKDL 83 >gi|225175042|ref|ZP_03729039.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225169682|gb|EEG78479.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 65 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+E+ + G ++ ++ +E G+ +I +A + +L Sbjct: 3 NKLKVYRAMHDLTQEELAKKLGVTRATVNSIEKGRYDPSIKLAFKMARFFAVNVEELF 60 >gi|254501957|ref|ZP_05114108.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438028|gb|EEE44707.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 261 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R +L+Q ++ G +Q IS LETG+S + + L L P+ ++ Sbjct: 8 FPELLKTWRSRRRLSQLDLALEAGLSQRHISFLETGRSKPSRMAISQLGLALGMPVAEV 66 >gi|221231412|ref|YP_002510564.1| hypothetical protein SPN23F_05280 [Streptococcus pneumoniae ATCC 700669] gi|225860586|ref|YP_002742095.1| helix-turn-helix domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298230934|ref|ZP_06964615.1| helix-turn-helix domain protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255848|ref|ZP_06979434.1| helix-turn-helix domain protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502379|ref|YP_003724319.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae TCH8431/19A] gi|220673872|emb|CAR68377.1| putative uncharacterized protein [Streptococcus pneumoniae ATCC 700669] gi|225727200|gb|ACO23051.1| helix-turn-helix domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|298237974|gb|ADI69105.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae TCH8431/19A] gi|327390324|gb|EGE88665.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332074396|gb|EGI84872.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332076422|gb|EGI86885.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] Length = 88 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETG+S++ +D ++ + +L L Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTL 78 >gi|212716513|ref|ZP_03324641.1| hypothetical protein BIFCAT_01439 [Bifidobacterium catenulatum DSM 16992] gi|212660594|gb|EEB21169.1| hypothetical protein BIFCAT_01439 [Bifidobacterium catenulatum DSM 16992] Length = 188 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAHTLDTPLWKLLK 82 R+IR+ TQ E+ TG Q IS ETG + + +D L+ L LK Sbjct: 117 LRDIRRTRGYTQSELSEMTGIPQPNISWFETGYRSTSGMRLDTARRLSEALQCDPTDFLK 176 >gi|220918294|ref|YP_002493598.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956148|gb|ACL66532.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 477 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R++ LTQ ++ +R G + S+++ +E + + +I LA L L Sbjct: 8 LGAKVRALRRQRNLTQVQLADRLGISASYLTLIEHNRRPLPALLLIKLADLFQLDLKSL 66 >gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes] gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 229 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R E K Q EI + G ++ ++ E+GKS N N+ LA LD P Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYNKWESGKSVPNQKNLTALATILDVP 57 >gi|254247276|ref|ZP_04940597.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184] gi|124872052|gb|EAY63768.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184] Length = 228 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|320534658|ref|ZP_08035102.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133133|gb|EFW25637.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 120 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P + +L R R +R+ T +E+ ++ + ++SE+E G+ + + + Sbjct: 16 DTPKHENVVL--RREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELL 73 Query: 67 IILAHTLDTPLWKLLK 82 + LD PL +L+ Sbjct: 74 ASICQALDAPLSMVLR 89 >gi|311900357|dbj|BAJ32765.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 274 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE+ R++ +Q E+ N + I +ETG+S + + ++ LA LD P Sbjct: 18 REQARAGRLLAKWRRQRGFSQLELANLADVSARHIGFVETGRSQPSREMVLRLAGHLDVP 77 >gi|312866087|ref|ZP_07726308.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311098491|gb|EFQ56714.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 162 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N +RK +Q++I + ++ + E+G++ NI+ +LA + L++ Sbjct: 21 ENLIMLRKLKGFSQEKIAEKIAISRQAYGKWESGETIPNIEKCALLAEVYGVTIDSLIR 79 >gi|291545337|emb|CBL18445.1| transcriptional regulator, XRE family [Ruminococcus sp. SR1/5] Length = 71 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++R +A L+Q+E+ +Q S ETG I I+ +I LA+ DT + L+ Sbjct: 3 FQRIQDLRTDADLSQRELSEILHISQRSYSHYETGSRNIPIEMLIRLANYYDTSIDYLV 61 >gi|260597934|ref|YP_003210505.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032] gi|260217111|emb|CBA30892.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032] Length = 199 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RKE +T + R G ++ + ELE + +I + +A L + LL Sbjct: 22 LAQRLKSWRKEHNVTLDTLSRRAGVSKGMLVELEKAAANPSIAILCKIAAALGLSVADLL 81 >gi|302518087|ref|ZP_07270429.1| regulatory protein [Streptomyces sp. SPB78] gi|318062288|ref|ZP_07981009.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318080399|ref|ZP_07987731.1| regulatory protein [Streptomyces sp. SA3_actF] gi|302426982|gb|EFK98797.1| regulatory protein [Streptomyces sp. SPB78] Length = 189 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ +LT + R+G + ++S++E ++ + ++ +AH L+T + +L Sbjct: 9 VGNAVRRRRRALELTLATVARRSGLSVPFLSQIENERARPSTRSLSAVAHALETTVDELF 68 >gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 115 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK + L+Q ++ + G I E G + I+ +I +A + +L Sbjct: 1 MVGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGINLPGIEQLIRIATVFNVAPGEL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 71 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E TQK++ + G + ++ +E GK ++++ +A T + L+ + + Sbjct: 5 NRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYDVFQ 63 >gi|171778925|ref|ZP_02919987.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282571|gb|EDT47995.1| hypothetical protein STRINF_00848 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK K++Q E+ G + I LE G+ +++ +A + ++ Sbjct: 4 RIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAEYFGMTIEEIF 60 >gi|188585017|ref|YP_001916562.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349704|gb|ACB83974.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 120 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R+ L++K++ G + I +LE G+ ++ + ++ L + + Sbjct: 11 GDRIREERERLDLSRKKLGRLIGVTEHHIGQLERGERNTSLTTLAKISQVLKVSIDSFV 69 >gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 132 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R P + L + R+ LTQ ++ Q IS E G Sbjct: 1 MTTRPTSPPDDAQDALLAARV-GTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRM 59 Query: 61 INIDNMIILAHTLDTPLWKLLK 82 + + L+ LD + +LL+ Sbjct: 60 PTLHRLQQLSDALDCSVDQLLQ 81 >gi|42520374|ref|NP_966289.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410112|gb|AAS14223.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 312 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RN R TQK++ + I + E G I+I + LA L T Sbjct: 14 KVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKLYELAEALSTTARD 73 Query: 80 L 80 L Sbjct: 74 L 74 Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQ+++ ++ G I E E G++ ++++ + +A L + LL Sbjct: 170 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAKVLLINITDLL 229 >gi|114567516|ref|YP_754670.1| hypothetical protein Swol_2004 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338451|gb|ABI69299.1| hypothetical protein Swol_2004 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 127 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +R R +R+ K TQ+E+ G ++ LE G I + +A L P Sbjct: 2 KREALARRIRELREAYKKTQEEMAGVVGISRQAYIRLEKGAREIAFVEIEKIADYLGIP 60 >gi|194335730|ref|YP_002017524.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] gi|194308207|gb|ACF42907.1| transcriptional regulator, XRE family [Pelodictyon phaeoclathratiforme BU-1] Length = 108 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82 + R+ + +TQ+ + + G +S IS LE+G K + ++ + A ++ L LK Sbjct: 41 RELLSARQLSGMTQEAVALKIGTTKSAISRLESGSKHSPSLTTLRKYAEAVNCELEIKLK 100 Query: 83 P 83 P Sbjct: 101 P 101 >gi|329947476|ref|ZP_08294678.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328524755|gb|EGF51810.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 120 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P + +L R R +R+ T +E+ ++ + ++SE+E G+ + + + Sbjct: 16 DTPKHENVVL--RREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELL 73 Query: 67 IILAHTLDTPLWKLLK 82 + LD PL +L+ Sbjct: 74 ASICQALDAPLSMVLR 89 >gi|315268235|gb|ADT95088.1| transcriptional regulator, XRE family [Shewanella baltica OS678] Length = 204 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80 + +RK +TQ E+ + AQ+ I +LE G N+ LA L T L Sbjct: 4 AERVKRLRKALGMTQYELADLVSTAQTSIQKLERGDTKNPR--NIEALAKALQTTPEFL 60 >gi|313794167|gb|EFS42187.1| cupin domain protein [Propionibacterium acnes HL110PA1] gi|313803289|gb|EFS44485.1| cupin domain protein [Propionibacterium acnes HL110PA2] gi|313812436|gb|EFS50150.1| cupin domain protein [Propionibacterium acnes HL025PA1] gi|313839180|gb|EFS76894.1| cupin domain protein [Propionibacterium acnes HL086PA1] gi|314963824|gb|EFT07924.1| cupin domain protein [Propionibacterium acnes HL082PA1] gi|315078309|gb|EFT50348.1| cupin domain protein [Propionibacterium acnes HL053PA2] gi|327334383|gb|EGE76094.1| putative Helix-turn-helix domain protein [Propionibacterium acnes HL097PA1] gi|327455918|gb|EGF02573.1| cupin domain protein [Propionibacterium acnes HL092PA1] Length = 194 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + T ++ + G ++ + +E G + ++ L+ L L L++ Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72 Query: 83 P 83 P Sbjct: 73 P 73 >gi|313499703|gb|ADR61069.1| Transcriptional regulator, putative [Pseudomonas putida BIRD-1] Length = 184 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83 +RK LT E+ R + ++S++E G S + ++ ++ L + L KP Sbjct: 17 LRKFKNLTLGELAERINRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74 >gi|308172435|ref|YP_003919140.1| hypothetical protein BAMF_0544 [Bacillus amyloliquefaciens DSM 7] gi|307605299|emb|CBI41670.1| yqaE hypothetical protein B. subtilis [Bacillus amyloliquefaciens DSM 7] Length = 126 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R KL Q+E+ + G A++ + E GK + + ++ +A D + LL Sbjct: 3 FSFRLKELRVGRKLNQQEVADNLGIARTTYASYEQGKREPDHETLVKIADFFDVSIDFLL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|307324459|ref|ZP_07603667.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890190|gb|EFN21168.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + R + R R A++TQ+ + R + + IS E G+ D+ + Sbjct: 2 QMDRRPRTAREKYGEELRLRRIAAEMTQEALSERVVCSPTLISHFEAGRRLPRPDDAARI 61 Query: 70 AHTLDT 75 L T Sbjct: 62 DQALGT 67 >gi|291084897|ref|YP_003495180.1| gp39 [Mycobacterium phage Ardmore] gi|262262733|gb|ACY39921.1| gp39 [Mycobacterium phage Ardmore] Length = 119 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ + E+ +G + ++S+LE G N LA L P+ L +P Sbjct: 52 QELRIIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 111 >gi|237723180|ref|ZP_04553661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447702|gb|EEO53493.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 97 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + + KE +T ++ + G Q +S G ++ + +A+ L+ + +L P Sbjct: 2 RIKEVCKEKGITVSQLAEKMGIKQESLSRAING--NPTLETLERIANALEVDITELFAP 58 >gi|226948715|ref|YP_002803806.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226842413|gb|ACO85079.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 73 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82 R +R + TQ+ + R G Q +IS LE G+ + I + L+ L KLL+ Sbjct: 1 MRKLRTKLGYTQETLGERIGVEQPYISRLENGEIEFMTIGKLKKLSRALQVHPVKLLE 58 >gi|261346677|ref|ZP_05974321.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282565383|gb|EFB70918.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 87 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N+ R R L+ +E+ +Q IS E G + +++D +I +A LD + ++ Sbjct: 12 VLGNHLRKARVSKGLSGQELAGIIQLSQQQISRYELGINKLSLDKLIEIAIFLDIDINEI 71 Query: 81 LK 82 K Sbjct: 72 TK 73 >gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +RKE LTQ ++ R + S I+ ET + + + +A L + ++ Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMAQI 68 >gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] Length = 302 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + +RK++ +TQ+++ + G +S+ E G S + D + +A D + L Sbjct: 5 FSKQLQMLRKQSGITQEQLAAKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNL 62 >gi|160935566|ref|ZP_02082941.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] gi|158441310|gb|EDP19020.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] Length = 115 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+E ++Q + + G I +E + + + L TL P + Sbjct: 6 KTLGTVIRKAREEQGMSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLVTTLRIPADR 65 Query: 80 LLKP 83 + P Sbjct: 66 IFYP 69 >gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 205 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 31/58 (53%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ LLK Sbjct: 6 RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDYLLK 63 >gi|323487309|ref|ZP_08092609.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum WAL-14163] gi|323694251|ref|ZP_08108427.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum WAL-14673] gi|323399354|gb|EGA91752.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum WAL-14163] gi|323501724|gb|EGB17610.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum WAL-14673] Length = 126 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R TQ+++ + G S ETGK ++ + LA L T Sbjct: 1 MSFTERLKEARISVGYTQQQVADAMGITNSTYCGYETGKRQPDVAKIKQLAKILKTSGDF 60 Query: 80 LLK 82 LL+ Sbjct: 61 LLE 63 >gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 374 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + +R LTQ+++ + IS E G ST +I + +A L Sbjct: 4 LGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTDYLF 63 >gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28] Length = 68 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++RK+ +LTQK++ + G S IS+ E I + LA L T LL Sbjct: 6 FGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLL 65 >gi|253723667|ref|YP_003023953.1| TrbA DNA binding protein [Photobacterium damselae subsp. piscicida] gi|251752731|dbj|BAH83604.1| TrbA DNA binding protein [Photobacterium damselae subsp. piscicida] Length = 125 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 28/52 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 IF N I E +T+ E+ R+G + S++S+L TG + ++ + +A Sbjct: 5 IFFTNVLKILDERHMTKSELAERSGVSISFLSDLTTGNANPSLKVLEAIASA 56 >gi|229817429|ref|ZP_04447711.1| hypothetical protein BIFANG_02691 [Bifidobacterium angulatum DSM 20098] gi|229785218|gb|EEP21332.1| hypothetical protein BIFANG_02691 [Bifidobacterium angulatum DSM 20098] Length = 178 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K E L R R++R T +E+ + G + ++SE+E G+ + + Sbjct: 93 KPTEHQEDTLSL--RGAIGLVLRDLRSRDHKTLREVSEKAGVSLGYLSEVERGQKEASSE 150 Query: 65 NMIILAHTLDTPLWKLLK 82 + +A L +LL+ Sbjct: 151 LLSSIAEALGVSTAQLLR 168 >gi|224824859|ref|ZP_03697966.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603352|gb|EEG09528.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 182 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R G + IS +E + + ++ +++ L + L Sbjct: 4 GPRLKLVRERYKLSQRELAKRAGVTNATISLIEQNRVSPSVSSLVKLLEGIPMSLADFFT 63 >gi|154508670|ref|ZP_02044312.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC 17982] gi|153798304|gb|EDN80724.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC 17982] Length = 156 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 28/44 (63%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 R R++A LTQ E+ TG +QS ++++E+GK ++ + + + Sbjct: 13 VRAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVSSELLERI 56 >gi|150005960|ref|YP_001300704.1| hypothetical protein BVU_3458 [Bacteroides vulgatus ATCC 8482] gi|254881845|ref|ZP_05254555.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641134|ref|ZP_07995837.1| hypothetical protein HMPREF9011_01434 [Bacteroides sp. 3_1_40A] gi|149934384|gb|ABR41082.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254834638|gb|EET14947.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387265|gb|EFV68141.1| hypothetical protein HMPREF9011_01434 [Bacteroides sp. 3_1_40A] Length = 142 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK LTQ+E+ G ++ +S++E G +N + +A L LK Sbjct: 9 GELLAQCRKNKGLTQEEVGVMIGVQKAMVSKVENGLC-VNFGTVNRIAEALGVEPIVALK 67 >gi|154250733|ref|YP_001411557.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154683|gb|ABS61900.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 204 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R +Q+E+ R G IS +E + + ++ ++ + + L Sbjct: 28 GARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRISPSVGSLKKVLDGFPISIADFLT 87 >gi|56461519|ref|YP_156800.1| Cro/CI family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180529|gb|AAV83251.1| Transcriptional regulator, Cro/CI family [Idiomarina loihiensis L2TR] Length = 191 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RK+ ++ E+ ++ + ++E G++ +I + LA+ L + ++ Sbjct: 14 AKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRANPSIGILCKLANALAVSVADIV 72 >gi|83858712|ref|ZP_00952234.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] gi|83853535|gb|EAP91387.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] Length = 67 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R +R E + +Q ++ R G ++ I+ +ET K ++ +A + + + P Sbjct: 3 NRIRVLRAERRWSQADLGERVGVSRQAINAVETSKHDPSLSLAFKIAEAFEAKIEDVFDP 62 >gi|114049428|ref|YP_739978.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890870|gb|ABI44921.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 510 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64 +++R+ RN+RK LT +++ R + S++S +E GK + + Sbjct: 4 DQSLMRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAE 63 Query: 65 NMIILAHTLDT 75 + ++A Sbjct: 64 MLAVIATVFQK 74 >gi|117919707|ref|YP_868899.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117612039|gb|ABK47493.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 96 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK L+Q+ + + +++++S LE + + + L ++ LL Sbjct: 7 LARALKAVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLSKLAELCEVMEVHPLTLL 64 Query: 82 K 82 Sbjct: 65 T 65 >gi|319938747|ref|ZP_08013111.1| xre family toxin-antitoxin system [Streptococcus anginosus 1_2_62CV] gi|319811797|gb|EFW08063.1| xre family toxin-antitoxin system [Streptococcus anginosus 1_2_62CV] Length = 98 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ + R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 29 RVAIMSELIDARNEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87 >gi|313771648|gb|EFS37614.1| cupin domain protein [Propionibacterium acnes HL074PA1] gi|313831440|gb|EFS69154.1| cupin domain protein [Propionibacterium acnes HL007PA1] gi|313834091|gb|EFS71805.1| cupin domain protein [Propionibacterium acnes HL056PA1] gi|314974865|gb|EFT18960.1| cupin domain protein [Propionibacterium acnes HL053PA1] gi|314977806|gb|EFT21900.1| cupin domain protein [Propionibacterium acnes HL045PA1] gi|314984545|gb|EFT28637.1| cupin domain protein [Propionibacterium acnes HL005PA1] gi|315095655|gb|EFT67631.1| cupin domain protein [Propionibacterium acnes HL038PA1] gi|327332969|gb|EGE74701.1| putative Helix-turn-helix domain protein [Propionibacterium acnes HL096PA2] gi|327448676|gb|EGE95330.1| cupin domain protein [Propionibacterium acnes HL043PA1] gi|327451098|gb|EGE97752.1| cupin domain protein [Propionibacterium acnes HL043PA2] gi|328761942|gb|EGF75451.1| putative Helix-turn-helix domain protein [Propionibacterium acnes HL099PA1] Length = 194 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + T ++ + G ++ + +E G + ++ L+ L L L++ Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72 Query: 83 P 83 P Sbjct: 73 P 73 >gi|307267664|ref|ZP_07549123.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306917316|gb|EFN47631.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 427 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +R + L+Q E+ ++ +S +E+GK+ +++ + LA L+ P Sbjct: 6 GDKIKALRLQKNLSQSELCGNF-MSRVVLSRIESGKALPSLEQLAYLAEKLEVP 58 >gi|300919981|ref|ZP_07136440.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] gi|300412928|gb|EFJ96238.1| peptidase S24-like domain protein [Escherichia coli MS 115-1] Length = 235 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F A ++Q ++ + G +Q I ++ +GK+ + M+ LA+ L Sbjct: 2 KTFAERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGS-RKMVELANALKVRPEW 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|282851954|ref|ZP_06261314.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556963|gb|EFB62565.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 158 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLWKL 80 F R K+T E+ +TGF++S +S+ K+ D + +A L+ P W L Sbjct: 5 FSARIRKALDYRKMTAAELSRQTGFSRSILSQYINNKANPKQDKVYKIAKALNINPTWLL 64 Query: 81 LKP 83 P Sbjct: 65 GYP 67 >gi|260598023|ref|YP_003210594.1| HTH-type transcriptional regulator YdcN [Cronobacter turicensis z3032] gi|260217200|emb|CBA31069.1| Uncharacterized HTH-type transcriptional regulator ydcN [Cronobacter turicensis z3032] Length = 204 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + TG +++ + ++E +S+ + + +A + P + Sbjct: 35 LAQTLKALRQQKNWSLTQAAQETGVSKAMLGQIERNESSPTVATLWKIATGFNVPFSVFI 94 Query: 82 KP 83 P Sbjct: 95 TP 96 >gi|255524575|ref|ZP_05391529.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185777|ref|ZP_06854184.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255511728|gb|EET88014.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049605|gb|EFG89032.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 231 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +F + RKE LTQK++ + ++ I +LETG + + + + Sbjct: 1 MFSQKLKKYRKELGLTQKDLGKKLDLSKESIGQLETGLKEPSKALLEKIYKFSGKNM 57 >gi|258516796|ref|YP_003193018.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780501|gb|ACV64395.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 133 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81 N R R TQK++ + IS E G + I D+++ LA L LL Sbjct: 4 GNRIRTQRILKDFTQKQLAELVNVSPQVISNWERGYTPVIPHDDVVRLADALGISPAYLL 63 >gi|254251470|ref|ZP_04944788.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158] gi|124894079|gb|EAY67959.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158] Length = 259 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 65 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 124 Query: 80 LLK 82 L+ Sbjct: 125 FLR 127 >gi|118478631|ref|YP_895782.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196042846|ref|ZP_03110085.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225865314|ref|YP_002750692.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300118327|ref|ZP_07056074.1| DNA-binding protein [Bacillus cereus SJ1] gi|118417856|gb|ABK86275.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196026330|gb|EDX64998.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788363|gb|ACO28580.1| DNA-binding protein [Bacillus cereus 03BB102] gi|298724296|gb|EFI64991.1| DNA-binding protein [Bacillus cereus SJ1] Length = 67 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ + G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 219 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK KLT + + TGF+ + IS++E + I + LA D + Sbjct: 39 GAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLSKLARFFDVKISHFF 97 >gi|330891950|gb|EGH24611.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 109 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +R L Q E+ + IS E ++ NI++++ LA Sbjct: 2 RDFVAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAETMPNIEDLLRLADLFGVSPM 61 Query: 79 KLLKP 83 ++L P Sbjct: 62 EILPP 66 >gi|329915926|ref|ZP_08276315.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gi|327544831|gb|EGF30214.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 355 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + RK A L+ +E+ + G + + + E ++T +I LA L+ Sbjct: 1 MIGRRLSRARKAAGLSLREVGAQIGLTHASVKKYEDEQATPTSATLIKLARALNVRTEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|317497443|ref|ZP_07955763.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895229|gb|EFV17391.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 213 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN----IDNMIILAHTLDTPLWKL 80 N + +RK A L+Q+E+ + +G A I E K IN ID + + L L Sbjct: 152 NLKRLRKIAGLSQRELADLSGVALRQIQLFEQKKRNINHTRAIDVL-KIGKVLGCKSEDL 210 Query: 81 LK 82 L+ Sbjct: 211 LE 212 >gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617] gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617] gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617] Length = 129 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +R++ L+Q+ + + G + + ETG++ +ID + +A L Sbjct: 11 MSLSERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQPSIDILKKIATALHVSTDF 70 Query: 80 LL 81 LL Sbjct: 71 LL 72 >gi|295399293|ref|ZP_06809275.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978759|gb|EFG54355.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 80 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IR + LTQ + G+ + S +SE+E GK I+ D + +LA LD + Sbjct: 2 KRQIGERIKEIRIKKGLTQSYVAKELGYKSPSMLSEIEAGKKGIDADKIPLLAKILDVDI 61 Query: 78 WKLL 81 +L Sbjct: 62 NELF 65 >gi|229014833|ref|ZP_04171932.1| hypothetical protein bmyco0001_52230 [Bacillus mycoides DSM 2048] gi|228746463|gb|EEL96367.1| hypothetical protein bmyco0001_52230 [Bacillus mycoides DSM 2048] Length = 51 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+++ N+ G + I LE GK ++ +A L P+ L Sbjct: 1 MSQEDLANKVGVRRETIGNLENGKYNPSLKLAYDIAQVLKAPIEVLF 47 >gi|255092517|ref|ZP_05321995.1| putative phage repressor [Clostridium difficile CIP 107932] Length = 113 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F F+ +R E LTQ E+ + T F +S IS+ E K I+ + A D Sbjct: 4 FGERFKFLRTEMNLTQDELVEKFNKVYLTSFNKSTISQYENNKRKPEINILENWADFFDV 63 Query: 76 PLWKLL 81 + LL Sbjct: 64 SIDYLL 69 >gi|167767361|ref|ZP_02439414.1| hypothetical protein CLOSS21_01880 [Clostridium sp. SS2/1] gi|167711336|gb|EDS21915.1| hypothetical protein CLOSS21_01880 [Clostridium sp. SS2/1] gi|291559340|emb|CBL38140.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] Length = 213 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN----IDNMIILAHTLDTPLWKL 80 N + +RK A L+Q+E+ + +G A I E K IN ID + + L L Sbjct: 152 NLKRLRKIAGLSQRELADLSGVALRQIQLFEQKKRNINHTRAIDVL-KIGKVLGCKSEDL 210 Query: 81 LK 82 L+ Sbjct: 211 LE 212 >gi|167762206|ref|ZP_02434333.1| hypothetical protein BACSTE_00558 [Bacteroides stercoris ATCC 43183] gi|167699849|gb|EDS16428.1| hypothetical protein BACSTE_00558 [Bacteroides stercoris ATCC 43183] Length = 86 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + I KE +T E+ ++ G ++ +S G + I + +A L+ P+W+L Sbjct: 2 NRIKEILKEQGVTINELADKLGISRVTLSTQINGTAN--IVSYEKIATALNVPMWQLF 57 >gi|167461704|ref|ZP_02326793.1| Transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384015|ref|ZP_08057743.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] gi|321151382|gb|EFX44571.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] Length = 152 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ KL+Q+E+ G +Q+ IS++E G + + +LA L + L Sbjct: 11 GKIIKQLRQKYKLSQEELAK--GICSQAHISKIERGIQFPSGVMLYLLAQKLRISVDYLF 68 Query: 82 KP 83 P Sbjct: 69 NP 70 >gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 71 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 31/59 (52%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E TQK++ + G + ++ +E GK ++++ +A T + L+ + + Sbjct: 5 NRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYDVFQ 63 >gi|91214743|ref|ZP_01251716.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC 700755] gi|91187170|gb|EAS73540.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC 700755] Length = 104 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + ++R +A L+Q E+ +TG ++S I+ +E G +I ++I ++ +L+ Sbjct: 17 WGEKLSSLRVDAGLSQTELAQKTGMSRSSIAGIEKG-RNFSIASLISISRSLE 68 >gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3] gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3] Length = 286 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + ++ RK L+Q+E+ + G ++ IS E G + +I L+ D + Sbjct: 8 KYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDD 67 Query: 80 LL 81 Sbjct: 68 FF 69 >gi|85373888|ref|YP_457950.1| transcriptional regulator [Erythrobacter litoralis HTCC2594] gi|84786971|gb|ABC63153.1| probable transcriptional regulator [Erythrobacter litoralis HTCC2594] Length = 459 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +RK +TQ E+ R G + S+++ +E + ++ ++ L D +L Sbjct: 9 GAALRRLRKREGVTQAEMAQRLGISASYLTLMERNQRPVSARVIVQLVEQYDFDPRQL 66 >gi|26988663|ref|NP_744088.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983447|gb|AAN67552.1|AE016384_4 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 102 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ F FR +R + LTQ+ + +I LE G+ + ++ + L L Sbjct: 13 KIAFGRVFRQLRVQRGLTQEAFDPAA--SVRYIRNLEKGEYSPSLATVRGLCDVLAVSPV 70 Query: 79 KLL 81 L+ Sbjct: 71 TLI 73 >gi|110347395|ref|YP_666211.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110287571|gb|ABG65628.1| transcriptional regulator, XRE family with cupin sensor [Chelativorans sp. BNC1] Length = 229 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 DE + +++ + R+ ++T E+ RT + S +S +E KS +++++ Sbjct: 13 DEKGPASPFSVDQLRIGPRLKAARRLQRITLAELSKRTSISISLLSRIENDKSVPSLESL 72 Query: 67 IILAHTLDT 75 ++ +T+ Sbjct: 73 FVITNTMGI 81 >gi|330718206|ref|ZP_08312806.1| transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 71 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R++ KL+Q E+ R G A+ I+ +E K ++ + LA+ L+T L L Sbjct: 2 NRIKQYRQKKKLSQYELSQRIGVARQTINLIENDKYNPSLALCLKLAYALETDLNTLF 59 >gi|289649274|ref|ZP_06480617.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 109 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +R L Q E+ + IS E ++ NI++++ LA Sbjct: 2 RDFVAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAETMPNIEDLLRLADLFGVSPM 61 Query: 79 KLLKP 83 ++L P Sbjct: 62 EILPP 66 >gi|260662800|ref|ZP_05863694.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|260552881|gb|EEX25880.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 204 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE +TQ + + + IS+ ETGKS + M+ L L + +LL Sbjct: 7 GKFIASCRKERGMTQANLAEKLRISDRAISKWETGKSMPDSGIMLELCDLLKINVNELL 65 >gi|257879733|ref|ZP_05659386.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|260559426|ref|ZP_05831607.1| transcriptional regulator [Enterococcus faecium C68] gi|293564063|ref|ZP_06678469.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|314942820|ref|ZP_07849636.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314953504|ref|ZP_07856419.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314992542|ref|ZP_07857961.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314997815|ref|ZP_07862725.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|257813961|gb|EEV42719.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|260074525|gb|EEW62846.1| transcriptional regulator [Enterococcus faecium C68] gi|291603981|gb|EFF33509.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|313588156|gb|EFR67001.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592909|gb|EFR71754.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594486|gb|EFR73331.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598455|gb|EFR77300.1| helix-turn-helix protein [Enterococcus faecium TX0133C] Length = 394 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 29/57 (50%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +R + ++ R E ++Q ++ G ++ +++++E G T +I M + L+ Sbjct: 3 QRNLDYRLLKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTASIKTMRKIFDQLE 59 >gi|257868167|ref|ZP_05647820.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874560|ref|ZP_05654213.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802281|gb|EEV31153.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808724|gb|EEV37546.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 77 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R +F R++R++ LTQ++I +QS S E G I I +I LA DT + Sbjct: 2 RTMF-QRIRDLREDNDLTQRQIATLLNVSQSTYSRYENGALDIPIQTLIKLASHYDTSID 60 Query: 79 KLL 81 L+ Sbjct: 61 YLV 63 >gi|171321294|ref|ZP_02910256.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093421|gb|EDT38604.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 227 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|169544181|ref|YP_001692956.1| putative addiction system transcriptional regulator [Yersinia enterocolitica] gi|168218365|emb|CAP20108.1| putative addiction system transcriptional regulator [Yersinia enterocolitica] Length = 100 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + ++ RK LTQ+++ + G + IS +E G S N+ + A L Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGGSVPNLATLSRYAAALG 89 >gi|116619126|ref|YP_819497.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097973|gb|ABJ63124.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 255 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IR + KLTQ E + +S E ++ + + ++ + + PL KLL Sbjct: 8 IKKIRDDNKLTQTEFAAFLSVSHQTVSSWERARTRPTLVMLKKISQSFNIPLSKLL 63 >gi|15902557|ref|NP_358107.1| hypothetical protein spr0513 [Streptococcus pneumoniae R6] gi|116515852|ref|YP_816011.1| hypothetical protein SPD_0509 [Streptococcus pneumoniae D39] gi|15458086|gb|AAK99317.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076428|gb|ABJ54148.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|332202466|gb|EGJ16535.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 88 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 78 >gi|313897061|ref|ZP_07830608.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974508|gb|EFR39976.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 103 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 25/50 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R+E ++Q+++ TG Q I+ +E G + + ++ + L L Sbjct: 40 NAREEKGISQRQLEELTGIKQPQIARMERGDANPQLGTLLKVLAPLGKTL 89 >gi|292490247|ref|YP_003525686.1| hypothetical protein Nhal_0078 [Nitrosococcus halophilus Nc4] gi|291578842|gb|ADE13299.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 167 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R +R +Q + G +Q I+ +E G + I+ L L+ + L Sbjct: 92 GDTVRTLRLRKGWSQARLAKELGTSQPHIARIERGTENLAIETCRKLCIALEIDMNAL 149 >gi|260174286|ref|ZP_05760698.1| transcriptional regulator [Bacteroides sp. D2] gi|315922556|ref|ZP_07918796.1| transcriptional regulator [Bacteroides sp. D2] gi|313696431|gb|EFS33266.1| transcriptional regulator [Bacteroides sp. D2] Length = 135 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 IR+ +TQ ++ G + IS++E + I+ D + +A L Sbjct: 12 LGRKIERIRRLRGMTQTDLGELLGVTKQAISKMEQSEK-IDDDKLKQVADALGV 64 >gi|326204880|ref|ZP_08194733.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984929|gb|EGD45772.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 133 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++R +QK++ G ++ IS+ E G ++ D +I+ A + + Sbjct: 3 VLSERVKSLRNVKGQSQKDVAKALGKSREAISKYERGTRNLDPDAIILFAKYFNVSSDYM 62 Query: 81 L 81 L Sbjct: 63 L 63 >gi|291298169|ref|YP_003509447.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567389|gb|ADD40354.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 806 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 24/54 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +A L+Q+ + + + I ++E+G+S + +LA L Sbjct: 12 GRLLRAHRLQAGLSQERLAQKAALSPRTIRQIESGRSQPRASTLKLLAEALGLS 65 >gi|227892050|ref|ZP_04009855.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227866160|gb|EEJ73581.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length = 184 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N + + ++Q E+ R+G +++ I+ GK + LA LD + LL Sbjct: 119 FQNRLKIAIENKGISQAELARRSGISRASITGYLKGKYKAKPCAIYSLAQALDVDAFWLL 178 >gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 404 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ G + +S+ E+G S +I+ + +LA + + KLL Sbjct: 6 GKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64 >gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum] gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius] gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] Length = 114 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 25/60 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R ++ +TQ+E+ + + +S E + +++ + + + K Sbjct: 11 GKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMDDFAK 70 >gi|213969499|ref|ZP_03397636.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] gi|301382711|ref|ZP_07231129.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato Max13] gi|302131409|ref|ZP_07257399.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925870|gb|EEB59428.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1] Length = 115 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER+ R R+ L+Q EI G ++ I+ +E+G + + L+ + Sbjct: 8 ERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARKVEATELKRLSSIYRRSV 67 Query: 78 WKLLK 82 LL Sbjct: 68 EYLLT 72 >gi|172058383|ref|YP_001814843.1| helix-turn-helix domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990904|gb|ACB61826.1| helix-turn-helix domain protein [Exiguobacterium sibiricum 255-15] Length = 79 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNR-----TGFAQSWISELETGKSTINIDNMIILAHTL 73 R + N + IRKE +TQ+E+ + T + IS++E + ++ +A+ L Sbjct: 5 RNLIGKNLKRIRKENCITQEELSAKLLTSGTNLDRPMISKIENQTREVTDIELVAIANVL 64 Query: 74 DTPLWKLLK 82 T + L++ Sbjct: 65 STSIDSLIE 73 >gi|162457008|ref|YP_001619375.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161167590|emb|CAN98895.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 476 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +R+ +TQ ++ R G + S+++ +E + + +I LA L Sbjct: 6 LLGAKVRALRRREHMTQVDLAERLGVSASYLNLIENNRRPLTAPLLIRLAQIFQLDL 62 >gi|149021940|ref|ZP_01835927.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] gi|147929978|gb|EDK80966.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] Length = 299 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|89895561|ref|YP_519048.1| hypothetical protein DSY2815 [Desulfitobacterium hafniense Y51] gi|89335009|dbj|BAE84604.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 91 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNR-----TGFAQSWISELETGKSTINIDNMIIL 69 F +N R R +TQ+E+ + ++ ++++E G I++D + + Sbjct: 23 KSFGDNIRKWRNAKGMTQEELSTQLQIHGCDISRGTLAKIEAGIRHISVDELQAI 77 >gi|86137308|ref|ZP_01055885.1| transcriptional regulator, putative [Roseobacter sp. MED193] gi|85825643|gb|EAQ45841.1| transcriptional regulator, putative [Roseobacter sp. MED193] Length = 432 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R R + Q E+ + G + S+++ +E + I ++ LA L L Sbjct: 8 GSRIRERRLILGIRQAELARKAGISASYLNLIEHNRRRIGGKLLVALAQVLGVEPSML 65 >gi|315143624|gb|EFT87640.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2141] Length = 68 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N + R +Q+E+ + G+ +S ++ E G ++ +D + +A L+ P Sbjct: 6 NRLKAERIAKGYSQEELAKKLGWTRSMYTKRENGAVSLGVDELAKIATALEMP 58 >gi|293189013|ref|ZP_06607745.1| putative toxin-antitoxin system, toxin component [Actinomyces odontolyticus F0309] gi|292822044|gb|EFF80971.1| putative toxin-antitoxin system, toxin component [Actinomyces odontolyticus F0309] Length = 156 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 28/44 (63%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 R R++A LTQ E+ TG +QS ++++E+GK ++ + + + Sbjct: 13 VRAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVSSELLERI 56 >gi|302544476|ref|ZP_07296818.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302462094|gb|EFL25187.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 276 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 ++ +R F + + +R KLTQK + G++++++S +E GK Sbjct: 7 SANLNPLQR--FGRDVKQVRLARKLTQKRLGQAAGYSEAYVSRVEAGK 52 >gi|302536538|ref|ZP_07288880.1| predicted protein [Streptomyces sp. C] gi|302445433|gb|EFL17249.1| predicted protein [Streptomyces sp. C] Length = 92 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP RK + L + L R+ + R E +Q+++ G Q +S LE +S Sbjct: 1 MP-RKNESDELEERDLAYRI--AQAVYDRRMELGWSQRQLAEAAGMRQPHVSRLEAARSL 57 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 ++D + +A + T L P Sbjct: 58 PSLDVLHRVAEAMGTDLMVCFVP 80 >gi|326201209|ref|ZP_08191081.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] gi|325988777|gb|EGD49601.1| transcriptional regulator, XRE family [Clostridium papyrosolvens DSM 2782] Length = 63 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK L Q+++ ++ I +E K ++ + +A LDT + +L Sbjct: 3 NNIKQLRKAKGLRQEDMAVSLNVSRQTIIAIENNKYNPTLELAMKMARLLDTTIEELF 60 >gi|229829910|ref|ZP_04455979.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] gi|229791208|gb|EEP27322.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] Length = 367 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RKE +TQ+E+ + ++ +S+ ETG+S +I + LA + + +L+ Sbjct: 5 AENIYQRRKEKNITQEELADFMMVTKASVSKWETGQSYPDILLLPKLATFFNVTVDELI 63 >gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 384 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+++ N G +++ +S+ E+G S +I + LA + + +LL Sbjct: 17 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 68 >gi|298529176|ref|ZP_07016579.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] gi|298510612|gb|EFI34515.1| transcriptional regulator, XRE family [Desulfonatronospira thiodismutans ASO3-1] Length = 91 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 3 RRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 +RK+ P + + F + R EA LTQ+++ + +S IS +E Sbjct: 10 KRKKKSPSFGENFDKGYEQFKIGVLLKQARLEAGLTQEQVASILNTKKSAISRIENHAED 69 Query: 61 INIDNMIILAHTLDTPL 77 I + ++ A + L Sbjct: 70 IRLSTLVNYAQAVGKNL 86 >gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 381 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+++ N G +++ +S+ E+G S +I + LA + + +LL Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 65 >gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall] Length = 373 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+++ N G +++ +S+ E+G S +I + LA + + +LL Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 65 >gi|311747423|ref|ZP_07721208.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126574781|gb|EAZ79152.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 194 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRKE E +++G + + +S++E G+ I +++ + +TL+ L Sbjct: 12 GNKIKGIRKEKGWKLGEFADKSGMSIAMLSKIENGRVIPTIPSLMQIINTLNLNLADFF 70 >gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 25/60 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R ++ +TQ+E+ + +S E S +++ + + + + K Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSEPDLNTLKKICYLFGVHMDDFAK 70 >gi|315221870|ref|ZP_07863782.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189103|gb|EFU22806.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 207 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R++ KLTQ+E+ N+ G + I E G+ I D LA + LL Sbjct: 5 NRIKELRQKEKLTQEELANKIGVTKRTIIAWEKGERQIKQDKAQQLADYFGVSVRYLL 62 >gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 137 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++RK+A +Q+ + G ++ +S+ E G+S +I + LA + L +L Sbjct: 1 MINKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGESLPDIISSSRLAEIFEISLDEL 60 Query: 81 LK 82 +K Sbjct: 61 VK 62 >gi|307825930|ref|ZP_07656145.1| transcriptional regulator, XRE family [Methylobacter tundripaludum SV96] gi|307733049|gb|EFO03911.1| transcriptional regulator, XRE family [Methylobacter tundripaludum SV96] Length = 102 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELE----TGKSTINIDNMIILAHTLDTPL 77 R+EA LTQ ++ +R G S ++ LE +GK + +ID + A + L Sbjct: 45 ARREAGLTQAQVADRMGTKASAVARLESALVSGKHSPSIDTLRKYAAAVGKKL 97 >gi|297544917|ref|YP_003677219.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842692|gb|ADH61208.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 65 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+E+ + G ++ I+ +E G+ ++ +A + + Sbjct: 3 NRLKVYRAMHDLTQEELATKLGVTRATINAIENGRYDPSLKLAFQIARFFKISIEDVF 60 >gi|268611043|ref|ZP_06144770.1| transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 78 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +RK+ LTQ ++ ++S + + ETG+ +D + +A D L Sbjct: 8 ICGKRIKALRKKNNLTQCQLAELLHMSRSTVLKYETGRQIPPVDRICDIADIFDVSTDYL 67 >gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] Length = 327 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + ++RK+ +Q+E+ + ++ +S+ E +S +++ ++ L+ Sbjct: 1 MILADKIIDLRKKNGWSQEELAEKLDVSRQSVSKWEGARSVPDMNKILRLSEVFAVSTDY 60 Query: 80 LLK 82 LLK Sbjct: 61 LLK 63 >gi|90420986|ref|ZP_01228890.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334764|gb|EAS48540.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 132 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 F R RKE +TQ ++ G + +++S LE G+ D + + L+ Sbjct: 4 FGEKVRAFRKERGVTQSQMAAALGVSSAYLSALEHGRRGRPTWDLLQRIIGYLNV 58 >gi|145223513|ref|YP_001134191.1| Fis family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145215999|gb|ABP45403.1| transcriptional regulator, Fis family [Mycobacterium gilvum PYR-GCK] Length = 192 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 6/87 (6%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNR----TGFAQSW--ISELET 56 ++K D+ + F R R++A L+Q+ + R TG ++ +ET Sbjct: 2 QQKSDDGQVQVPNSGTSRTFGEALRRAREQAGLSQRALAARLAEVTGLKLDHTALTRIET 61 Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83 + + LA L L L+ P Sbjct: 62 DQREPKVIEARALAAALGVQLDDLVPP 88 >gi|15900264|ref|NP_344868.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|15902345|ref|NP_357895.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|111657195|ref|ZP_01407970.1| hypothetical protein SpneT_02001592 [Streptococcus pneumoniae TIGR4] gi|116515521|ref|YP_815820.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148983739|ref|ZP_01817058.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|148988089|ref|ZP_01819552.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|148996747|ref|ZP_01824465.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|149013057|ref|ZP_01833923.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|149018025|ref|ZP_01834484.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168484208|ref|ZP_02709160.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168486615|ref|ZP_02711123.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168490753|ref|ZP_02714896.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168576734|ref|ZP_02722592.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169833560|ref|YP_001693853.1| hypothetical protein SPH_0443 [Streptococcus pneumoniae Hungary19A-6] gi|194396813|ref|YP_002037017.1| transcriptional regulator [Streptococcus pneumoniae G54] gi|225853916|ref|YP_002735428.1| hypothetical protein SPJ_0326 [Streptococcus pneumoniae JJA] gi|225856074|ref|YP_002737585.1| hypothetical protein SPP_0367 [Streptococcus pneumoniae P1031] gi|225858186|ref|YP_002739696.1| hypothetical protein SP70585_0396 [Streptococcus pneumoniae 70585] gi|298254745|ref|ZP_06978331.1| hypothetical protein SpneCM_03900 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502137|ref|YP_003724077.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259428|ref|ZP_07345405.1| hypothetical protein CGSSp9vBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|303261183|ref|ZP_07347132.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|303263510|ref|ZP_07349433.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|303265803|ref|ZP_07351701.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|303267766|ref|ZP_07353568.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|307066993|ref|YP_003875959.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|307704192|ref|ZP_07641115.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|1536960|emb|CAB01931.1| yorfE [Streptococcus pneumoniae] gi|14971806|gb|AAK74508.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|15457855|gb|AAK99105.1| Transcription regulator [Streptococcus pneumoniae R6] gi|116076097|gb|ABJ53817.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147757322|gb|EDK64361.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|147763092|gb|EDK70034.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|147923886|gb|EDK74998.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|147926553|gb|EDK77626.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|147931589|gb|EDK82567.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168996062|gb|ACA36674.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|172042565|gb|EDT50611.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|183570358|gb|EDT90886.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183574941|gb|EDT95469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183577574|gb|EDT98102.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194356480|gb|ACF54928.1| transcriptional regulator, putative [Streptococcus pneumoniae G54] gi|225720654|gb|ACO16508.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|225723727|gb|ACO19580.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225726347|gb|ACO22199.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|298237732|gb|ADI68863.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793585|emb|CBW35962.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301799462|emb|CBW32002.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301801258|emb|CBW33933.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302638020|gb|EFL68506.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|302639362|gb|EFL69820.1| hypothetical protein CGSSpBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|302642462|gb|EFL72807.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|302644711|gb|EFL74960.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|302647283|gb|EFL77507.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|306408530|gb|ADM83957.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|307622223|gb|EFO01237.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|332077619|gb|EGI88080.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332203500|gb|EGJ17567.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] gi|332204335|gb|EGJ18400.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 64 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE ++Q E+ G ++ I+ +E K ++ + LA +L T L L Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|320547844|ref|ZP_08042128.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447604|gb|EFW88363.1| cro/CI family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 65 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK K++Q E+ G + I LE G+ +++ +A + ++ Sbjct: 4 KIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAKYFGMTIEEIF 60 >gi|302548836|ref|ZP_07301178.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302466454|gb|EFL29547.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 282 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R +R EA L K+I ++ G+ S +S L+ GK T ++ A+ + Sbjct: 6 QTAREALGARLRELRAEAGLEGKDIASKVGWQTSKVSRLQNGKQTPTRADLTAWANAVGR 65 Query: 76 P 76 P Sbjct: 66 P 66 >gi|237734694|ref|ZP_04565175.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382022|gb|EEO32113.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 142 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 34/61 (55%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK + TQ+EI + G ++ +++ E+G+S +ID+ + LA + + L Sbjct: 1 MLSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNL 60 Query: 81 L 81 + Sbjct: 61 I 61 >gi|227872629|ref|ZP_03990961.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227841516|gb|EEJ51814.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 96 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +TQK++ N+TG QS IS+LE G +I + LA +D L Sbjct: 40 KNMTQKDLSNKTGINQSEISKLENGTRNPSIKLLQRLAEGMDMVL 84 >gi|169344650|ref|ZP_02865615.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297260|gb|EDS79372.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 365 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK+ K++Q++ + A+S +S E KS I ++ ++ ++ + +LL Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69 >gi|167760985|ref|ZP_02433112.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] gi|167661364|gb|EDS05494.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] Length = 166 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +RK +Q+EI + ++ + E+G++ +I+ +LA + L Sbjct: 18 LLKENLIMLRKLKGFSQEEIAEKIDISRQAYGKWESGETIPDIEKCALLAEVYGITIDSL 77 Query: 81 LK 82 ++ Sbjct: 78 IR 79 >gi|187250867|ref|YP_001875349.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] gi|186971027|gb|ACC98012.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] Length = 214 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 M R+E LTQKE+ + G S I+ ET + + N+ L+ L Sbjct: 1 MSIGKKILQARRELNLTQKELAQKIGLPGSTIARWETDSFSPSPKNIEKLSKALGRE 57 >gi|152994012|ref|YP_001359733.1| XRE family transcriptional regulator [Sulfurovum sp. NBC37-1] gi|151425873|dbj|BAF73376.1| transcriptional regulator, Xre family [Sulfurovum sp. NBC37-1] Length = 81 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETG--KSTINIDNMIILAHTLDTPLWK 79 N R IRKE +TQ ++ G + S I ++E G NI+++ +A LD + + Sbjct: 19 ATNIRKIRKEKGITQLDLALTIGHKSMSTIGKIEAGLEDKHYNIEHLYKIAKALDVDICE 78 Query: 80 LL 81 Sbjct: 79 FF 80 >gi|146276862|ref|YP_001167021.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555103|gb|ABP69716.1| putative transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] Length = 85 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+ +TQ ++ + G QS I+ +E+G+ I++ I + L + L+ Sbjct: 21 RRSRGMTQAQLAQKLGCQQSLIARIESGQRRIDVLEFIAIFRALGVEPHEALQ 73 >gi|152995207|ref|YP_001340042.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836131|gb|ABR70107.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 508 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINIDNMIIL 69 R+ RN+RK +LT +++ R + S++S +E GK + D + ++ Sbjct: 9 RKAHFLGTKIRNLRKRNRLTMEDLSARCIKVDAESAPSVSYLSMIERGKRIPSEDVLEVI 68 Query: 70 AHTLDT 75 A Sbjct: 69 ASVFQK 74 >gi|83594572|ref|YP_428324.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577486|gb|ABC24037.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 149 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M R+ + I R R L Q+ + R G + I + E G++ Sbjct: 1 MNGRETMPESDTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNR 60 Query: 61 INIDNMIILAHTLDTPL 77 I+ + +A L P+ Sbjct: 61 ISASRLYDIAKALAVPI 77 >gi|325569193|ref|ZP_08145398.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157442|gb|EGC69602.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 289 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + V F RK+A +Q+E+ G Q+ +S+ E ++ +I L + + PL Sbjct: 5 KAMNVERFIEARKQAGFSQQELSE--GICTQATLSKFENNGQAPSLKILIKLCNRIGLPL 62 Query: 78 WKLL 81 L Sbjct: 63 VDLF 66 >gi|323705548|ref|ZP_08117122.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535025|gb|EGB24802.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 438 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK+ L Q +I F++ +IS +E GK ++ + +A L+ PL L Sbjct: 6 LGKKIRDERKKLLLKQGDISGD-EFSKGYISLIEKGKINPSLKALDFIAKKLNKPLVYFL 64 >gi|295105803|emb|CBL03346.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK + Q+++ G ++ IS LE G+ +I +A D + + Sbjct: 3 NRLEEIRKARGIKQEDLATELGVSRQTISSLEKGRYNPSILLAFKIARHFDLSIEDVF 60 >gi|284048461|ref|YP_003398800.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952682|gb|ADB47485.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 80 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++R+ K+ Q ++ + IS +E GK ++ + +AH P+ + + Sbjct: 7 KIRDLRRIHKMQQSDLAKLVHVRRETISNIENGKYNPSLKLALDIAHVFGKPVEDIFE 64 >gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] Length = 166 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+RKE +Q+ + + ++ IS+ E+G++ I+ +I L+ LL Sbjct: 4 LAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAVPEIEKIIELSTIFQVTTDYLL 63 >gi|317046283|ref|YP_004113931.1| hypothetical protein Pat9b_0045 [Pantoea sp. At-9b] gi|316947900|gb|ADU67375.1| protein of unknown function DUF955 [Pantoea sp. At-9b] Length = 361 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RK L+QKE+ +Q +S++E G D + +A+ L+ P Sbjct: 19 RKMLGLSQKELAQIIAISQGTLSKIEQGLKPATDDQIENIANALNCP 65 >gi|257875059|ref|ZP_05654712.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257809225|gb|EEV38045.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 289 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + V F RK+A +Q+E+ G Q+ +S+ E ++ +I L + + PL Sbjct: 5 KAMNVERFIEARKQAGFSQQELSE--GICTQATLSKFENNGQAPSLKILIKLCNRIGLPL 62 Query: 78 WKLL 81 L Sbjct: 63 VDLF 66 >gi|229170554|ref|ZP_04298202.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] gi|228612903|gb|EEK70080.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] Length = 69 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E TQ+E+ R G ++ I+ LE K ++ +A+ + + + Sbjct: 13 RAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANIFEKSITDVF 64 >gi|254510337|ref|ZP_05122404.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534048|gb|EEE37036.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 466 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R LTQK+ + G + +++++E I+ ++ LA Sbjct: 3 TQKLYAGAKLREMRTRLTLTQKDFATKLGISLPYLNQMENNNRPISTTVVLALAQEFGMD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|167628057|ref|YP_001678557.1| XRE family transcriptional regulator [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598058|gb|ABZ88056.1| putative transcriptional regulator, XRE family [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 96 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 26/51 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N N+RK++ LTQ++I R G ++S +S LE I+ + A Sbjct: 31 NTLINMRKKSGLTQEQIAERMGTSRSNVSRLERLSVYPTINTLEKYAEACG 81 >gi|160916079|ref|ZP_02078286.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] gi|158431803|gb|EDP10092.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] Length = 194 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++ K++Q+E+ + ++ IS ET KS +I ++I L++ + L +K Sbjct: 4 GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNFIK 63 >gi|153814064|ref|ZP_01966732.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|317499821|ref|ZP_07958059.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087904|ref|ZP_08336828.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848460|gb|EDK25378.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|316898723|gb|EFV20756.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409391|gb|EGG88837.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] Length = 194 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++ K++Q+E+ + ++ IS ET KS +I ++I L++ + L +K Sbjct: 4 GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNFIK 63 >gi|91785547|ref|YP_560753.1| hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400] gi|91689501|gb|ABE32701.1| Hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400] Length = 161 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + ++L + N + +R+ ++ RT +++S LETGK + ++ LA Sbjct: 83 IPSSLLDAPTLVALNVKRLRRAKDWNAADLAERTLMKAAYVSLLETGKCGCTLRTLLRLA 142 Query: 71 HTLDTPLWKLLK 82 + +LL Sbjct: 143 AGFQVDVVQLLT 154 Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 7/60 (11%), Positives = 22/60 (36%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ L+ + + + + +E + ++ + +A+ D + +L Sbjct: 17 LAERIRCARELFDLSLHALSEKAQVDRKSLRSIEAAEFNPSVKTLERIANAFDMTIAELF 76 >gi|39653689|ref|NP_945254.1| transcriptional regulator [Streptococcus phage EJ-1] gi|38638857|emb|CAE82097.1| transcriptional regulator [Streptococcus phage EJ-1] Length = 58 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F+++ E +TQK + + G + + I ++T + I+ NM +A L + +L Sbjct: 3 KKFKHLLIEKGMTQKALAEKAGISPNTIRTIKTER--ISFKNMCKIADALGISIDEL 57 >gi|86141620|ref|ZP_01060166.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] gi|85832179|gb|EAQ50634.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R IRKE LT + + + IS +E G++ ++ ++ + LDT Sbjct: 9 GKRIREIRKEKGLTINTVASSAEVSNGLISRVENGRTIPSLPVLLNIIAALDTE 62 >gi|283479895|emb|CAY75811.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] gi|283479904|emb|CAY75820.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] Length = 142 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 RKE +LTQ ++ + G AQ ++ E GK ++ + LA L+ L + Sbjct: 34 KQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVSAALLPQLAQILNLSLDE 93 Query: 80 LL 81 LL Sbjct: 94 LL 95 >gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 195 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE LTQ+++ + G + +S+ E G ++ L+ L + KLL Sbjct: 6 VGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLGCPDVSLWEGLSTVLGADIIKLL 65 Query: 82 K 82 + Sbjct: 66 Q 66 >gi|259503754|ref|ZP_05746656.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259168270|gb|EEW52765.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 112 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R++ + TQ + ++ IS+ E G + +ID ++ +++ D L Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|225405836|ref|ZP_03761025.1| hypothetical protein CLOSTASPAR_05057 [Clostridium asparagiforme DSM 15981] gi|225042650|gb|EEG52896.1| hypothetical protein CLOSTASPAR_05057 [Clostridium asparagiforme DSM 15981] Length = 70 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR+ +T +++ ++G +++ I+ +E I M +L+ LD L L Sbjct: 8 RVYEIRRIKNMTLRDLSIKSGISRTEINNIENNLKDPTIRTMCLLSLALDVSLQDLF 64 >gi|254428879|ref|ZP_05042586.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195048|gb|EDX90007.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + R +TQ+++ +S IS E G+ + + L L L Sbjct: 11 MSFPERLKAARLALGMTQEQLGFELEVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDH 70 Query: 80 LL 81 L+ Sbjct: 71 LI 72 >gi|154498637|ref|ZP_02037015.1| hypothetical protein BACCAP_02627 [Bacteroides capillosus ATCC 29799] gi|150272376|gb|EDM99570.1| hypothetical protein BACCAP_02627 [Bacteroides capillosus ATCC 29799] Length = 102 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ F+ +R ++ +++ G + S+I+ +ETG S ++ + L Sbjct: 2 EQADFIKRLVELRMNKGVSARDMSLSIGQSSSYINNIETGVSFPSMTVFFYICDFLGVSP 61 Query: 78 WKLL 81 + Sbjct: 62 MEFF 65 >gi|315222885|ref|ZP_07864765.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188024|gb|EFU21759.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 116 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R +R E +TQ+++ R +++ +LE + I+ + + L+ Sbjct: 13 RDYIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEV 69 >gi|320107567|ref|YP_004183157.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926088|gb|ADV83163.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 107 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++A L+Q + G + ISE+ET ++ + A LL Sbjct: 10 LGQRLRQAREDAGLSQAQAAKLLGLHRPAISEIETEGRKVSAGELKNFASLYHVSTAWLL 69 >gi|325068439|ref|ZP_08127112.1| XRE family transcriptional regulator [Actinomyces oris K20] gi|326773690|ref|ZP_08232973.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505] gi|326636920|gb|EGE37823.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505] Length = 136 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D P + +L R R +R+ T +E+ ++ + ++SE+E G+ + + + Sbjct: 32 DTPKHENVVL--RREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELL 89 Query: 67 IILAHTLDTPLWKLLK 82 + LD PL +L+ Sbjct: 90 ASICQALDAPLSMVLR 105 >gi|303326712|ref|ZP_07357154.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302862700|gb|EFL85632.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 70 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 24/51 (47%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 RK +Q+ + +R G QS++S+ E G+ ++I +A L Sbjct: 20 QARKSQGFSQQYVADRLGKPQSFVSKYENGERRLDILEFFAIAEALQKDPV 70 >gi|291515460|emb|CBK64670.1| Helix-turn-helix [Alistipes shahii WAL 8301] Length = 93 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 23/42 (54%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +TQK + + +Q +IS++ G+ ++++ + + LD Sbjct: 42 GMTQKALAMKMNCSQQYISKVLKGRENLSLETLCKIEKALDV 83 >gi|289644973|ref|ZP_06477012.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505209|gb|EFD26269.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 74 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R E + +Q ++ +R ++ I+ +ETG+ ++ LA + ++ Sbjct: 3 NRLRVLRAERRWSQADLADRCRVSRQTINAIETGRYDPSLPLAFTLADIFGLAIEEIF 60 >gi|206559307|ref|YP_002230068.1| putative DNA binding protein [Burkholderia cenocepacia J2315] gi|198035345|emb|CAR51220.1| putative DNA binding protein [Burkholderia cenocepacia J2315] Length = 229 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|168216166|ref|ZP_02641791.1| transcriptional regulator, XRE family [Clostridium perfringens NCTC 8239] gi|182381613|gb|EDT79092.1| transcriptional regulator, XRE family [Clostridium perfringens NCTC 8239] Length = 144 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTL 73 F R E ++ +E+ + G + S++S++E G+ N + + ++ L Sbjct: 3 FGEYINKKRLEKGMSLRELAGKIGISPSYLSDIEKGRRNAPNNEKIEKISEVL 55 >gi|149001557|ref|ZP_01826530.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149006084|ref|ZP_01829813.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|168490030|ref|ZP_02714229.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168494685|ref|ZP_02718828.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|182683306|ref|YP_001835053.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221231212|ref|YP_002510364.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|237649376|ref|ZP_04523628.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974] gi|237821593|ref|ZP_04597438.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974M2] gi|298230655|ref|ZP_06964336.1| putative DNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|147760015|gb|EDK67004.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147762440|gb|EDK69401.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|182628640|gb|ACB89588.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|183571579|gb|EDT92107.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183575410|gb|EDT95938.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220673672|emb|CAR68163.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|327390749|gb|EGE89089.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332075179|gb|EGI85649.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332076774|gb|EGI87236.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 64 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE ++Q E+ G ++ I+ +E K ++ + LA +L T L L Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59 >gi|158320706|ref|YP_001513213.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140905|gb|ABW19217.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R +AKLT+KE+ + G ++I ++E+GK +N + + L L Sbjct: 4 VAEKIKEARMKAKLTEKELAKKCGLTANYIIQIESGKRVVNEKLAESILNVLGEKL 59 >gi|66046048|ref|YP_235889.1| peptidase [Pseudomonas syringae pv. syringae B728a] gi|63256755|gb|AAY37851.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas syringae pv. syringae B728a] Length = 216 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R AK+TQ+++ G Q IS++E+GK+ + +++ LA Sbjct: 4 LAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSA-HLVALAKACGV 56 >gi|15616111|ref|NP_244416.1| immunity repressor protein (phage-related protein) [Bacillus halodurans C-125] gi|10176173|dbj|BAB07268.1| immunity repressor protein (phage-related protein) [Bacillus halodurans C-125] Length = 154 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76 E F + R +RK+ T ++ +G + + IS +E G + + L+ L P Sbjct: 2 EGKQFGSFIRALRKKKGFTVNQLALYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHP 61 Query: 77 LWKLLK 82 L++ Sbjct: 62 YEDLMQ 67 >gi|115352794|ref|YP_774633.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282782|gb|ABI88299.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 227 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|319649464|ref|ZP_08003620.1| hypothetical protein HMPREF1013_00224 [Bacillus sp. 2_A_57_CT2] gi|317398626|gb|EFV79308.1| hypothetical protein HMPREF1013_00224 [Bacillus sp. 2_A_57_CT2] Length = 72 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + LTQ+E+ + ++S+ + +E G T +++ +A TL W L Sbjct: 5 LKTQRNKRNLTQEEVAKLSDISRSFYTHIEAGTKTPSVEVAKKIAKTLGFE-WTLF 59 >gi|302061586|ref|ZP_07253127.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. tomato K40] Length = 117 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER+ R R+ L+Q EI G ++ I+ +E+G + + L+ + Sbjct: 10 ERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARKVEATELKRLSSIYRRSV 69 Query: 78 WKLLK 82 LL Sbjct: 70 EYLLT 74 >gi|300174134|ref|YP_003773300.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG 18811] gi|299888513|emb|CBL92481.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG 18811] Length = 156 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R LTQ++I + + +S E G S +I ++ L+ + ++L Sbjct: 3 FGQKLQTARMNMNLTQQKIADDFFITRQTVSSWENGNSYPDIMTLLKLSDYFGFSIDEIL 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|269202476|ref|YP_003281745.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98] gi|262074766|gb|ACY10739.1| putative phage repressor [Staphylococcus aureus subsp. aureus ED98] Length = 238 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57 >gi|255324666|ref|ZP_05365780.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] gi|255298141|gb|EET77444.1| transcriptional regulator, XRE family [Corynebacterium tuberculostearicum SK141] Length = 86 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR K+ +P +A++ + F R+E + Q+++ + G ++S + +E G + + Sbjct: 7 PRHKQGKPAGDNAVI---LGLGAQFAERRRELGILQQQLADAAGISRSTLHTIEHGGAGV 63 Query: 62 NIDNMIILAHTLDTPL 77 + + +A L + Sbjct: 64 RWEKITAVAEALGLEM 79 >gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 70 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R E +++Q E+ G ++ IS +E GK + + +A P+ ++ Sbjct: 7 NRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFVPSTIIALKIAEYFKVPVEEVF 64 >gi|227111558|ref|ZP_03825214.1| regulator of pectin lyase production [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 + + R L+QK + + G +Q+ I ++E GK++ ++ L+++L P Sbjct: 2 KTTLAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKASQTT-KIVELSNSLHVRPE 60 Query: 78 W 78 W Sbjct: 61 W 61 >gi|210634400|ref|ZP_03298102.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] gi|210158825|gb|EEA89796.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] Length = 206 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + RKE L+Q ++ + ++ IS E G++ ++ ++++L++ + L+ Sbjct: 3 LGAHIKEHRKELGLSQDDLAAKIYVSRQTISNWEVGRTYPDVQSLLLLSNVFGVTVDSLI 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|189499530|ref|YP_001959000.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] gi|189494971|gb|ACE03519.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides BS1] Length = 89 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ER N R +A LTQ E+ R G Q+ IS+ E G+ T + + L+ L Sbjct: 14 ERNRIGNLLSGARLKAGLTQTELAKRLGVRQNMISDYENGRRTYSDEMAGRLSKVLKVKE 73 Query: 78 WKL 80 +L Sbjct: 74 ERL 76 >gi|108803015|ref|YP_642952.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764258|gb|ABG03140.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 77 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R A ++Q+E+ R+G A+ IS+LETGK + LA L+ L+ Sbjct: 6 LRDLRLRAVMSQEELARRSGVARDTISKLETGKRRAYPSTVRKLAEGLEVEPQALV 61 >gi|21218451|ref|NP_632000.1| hypothetical protein pLP9000_09 [Lactobacillus plantarum] gi|20853812|gb|AAM26929.1| unknown [Lactobacillus plantarum] Length = 112 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R++ + TQ + ++ IS+ E G + +ID ++ +++ D L Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 80 LLK 82 L+K Sbjct: 61 LIK 63 >gi|186684878|ref|YP_001868074.1| helix-turn-helix domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467330|gb|ACC83131.1| helix-turn-helix domain protein [Nostoc punctiforme PCC 73102] Length = 82 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 F RK AKLTQ E+ + QS++S+ E G+ +++ + +A L+ Sbjct: 13 FRQLLIEARKAAKLTQAELSAKLKLPQSYVSKYERGERRLDVIKFLQVAQVLEIDP 68 >gi|329998016|ref|ZP_08302983.1| cupin domain protein [Klebsiella sp. MS 92-3] gi|328538834|gb|EGF64903.1| cupin domain protein [Klebsiella sp. MS 92-3] Length = 200 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 SD R + + RK K++ E+ R ++ + E+E + +I + LA Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71 Query: 72 TLDTPLWKLL 81 L + ++ Sbjct: 72 ALGVSVADIV 81 >gi|296392464|ref|YP_003657348.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179611|gb|ADG96517.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 97 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D + L+ R++ R EA L Q ++ RTG + I E G ++ + Sbjct: 6 DSGTSPEISLKYRLLIA------RMEAGLEQSQLAERTGISVRTIRNAERGHTSPKQHVI 59 Query: 67 IILAHTLDTPLWKLLK 82 A P LL Sbjct: 60 YQWALATGVPATWLLT 75 >gi|269126771|ref|YP_003300141.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311729|gb|ACY98103.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 269 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT----GFAQSWISELETG 57 PRR+R + + F R R+EA LTQ+ + R G ++ ++E+G Sbjct: 3 PRRRRS------TVSPMLLAFGRQLRRYREEAGLTQESLGRRANNGRGVTSQYVGQVESG 56 Query: 58 KSTIN 62 ++ Sbjct: 57 RTRCT 61 >gi|260596321|ref|YP_003208892.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032] gi|260215498|emb|CBA27640.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032] Length = 103 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + R+ L+QK++ G A + I+ E G +I+ LA L P Sbjct: 10 VFCKRLKTAREAKGLSQKKLGILAGIDEFVASARINRYEKGVHQASIEIARKLADALAVP 69 Query: 77 L 77 L Sbjct: 70 L 70 >gi|289579293|ref|YP_003477920.1| helix-turn-helix domain protein [Thermoanaerobacter italicus Ab9] gi|289529006|gb|ADD03358.1| helix-turn-helix domain protein [Thermoanaerobacter italicus Ab9] Length = 438 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L Q ++ F++ +IS +E GK + ++ + +A L+ P+ L Sbjct: 6 LGRRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64 >gi|238896610|ref|YP_002921355.1| putative regulator with helix-turn-helix motif [Klebsiella pneumoniae NTUH-K2044] gi|238548937|dbj|BAH65288.1| putative regulator with helix-turn-helix motif [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 200 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 SD R + + RK K++ E+ R ++ + E+E + +I + LA Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71 Query: 72 TLDTPLWKLL 81 L + ++ Sbjct: 72 ALGVSVADIV 81 >gi|194015377|ref|ZP_03053993.1| YvaO [Bacillus pumilus ATCC 7061] gi|194012781|gb|EDW22347.1| YvaO [Bacillus pumilus ATCC 7061] Length = 133 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80 F R +R+E KL+ ++ + + + IS +E GK + LA L P ++ Sbjct: 3 FGAYLRALREEKKLSVNQLAMYSEVSAAGISRIENGKRGIPKPPTIKKLAGALKVPYEEM 62 Query: 81 LK 82 ++ Sbjct: 63 MQ 64 >gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 123 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + +F R +R + +Q+E + G ++ I+ E+G++T + +A +T Sbjct: 6 KEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTD 65 Query: 79 KLL 81 LL Sbjct: 66 YLL 68 >gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223] gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223] Length = 233 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK LTQ ++ + G + IS+ E+G ++ +N+ LA L Sbjct: 2 KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 80 LL 81 L+ Sbjct: 62 LM 63 >gi|77458352|ref|YP_347857.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382355|gb|ABA73868.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + +R+ KL+Q+E+ R+G + IS +E + + ++ ++ L + L Sbjct: 4 GSRLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSVSSLKKLLEGIPMSLADFFT 63 >gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155] gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155] Length = 233 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK LTQ ++ + G + IS+ E+G ++ +N+ LA L Sbjct: 2 KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61 Query: 80 LL 81 L+ Sbjct: 62 LM 63 >gi|319897089|ref|YP_004135284.1| hypothetical protein HIBPF08050 [Haemophilus influenzae F3031] gi|317432593|emb|CBY80953.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 127 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +L+Q++I + + S +++E G++ + D ++ +A + L +L+ Sbjct: 6 KIRMMRELRQLSQEDIAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNMNLSELV 62 >gi|315443841|ref|YP_004076720.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|315262144|gb|ADT98885.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length = 195 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 27/49 (55%) Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +T +++ R+ S +S LE+GK + +D++ LA L +LL+ Sbjct: 26 GMTLEDVATRSSIDISTLSRLESGKRRLALDHLPRLAGALSVSTDELLR 74 >gi|299133379|ref|ZP_07026574.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593516|gb|EFI53716.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 136 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 + + R R L+Q+++ + G I + E G + I + +A Sbjct: 2 SAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIA 61 Query: 71 HTLDTPLWKLLK 82 L P+ L + Sbjct: 62 DILQVPVSFLFE 73 >gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] Length = 319 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE LTQ+++ + IS ETG + ++ +I +A + + ++L Sbjct: 7 GEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTNMPDLSILIKMAEFYNVEVKEIL 65 >gi|183597719|ref|ZP_02959212.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC 25827] gi|188022996|gb|EDU61036.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC 25827] Length = 93 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R+ LT E+ + +Q IS E G + I D +IIL + L+ Sbjct: 14 GRMLKSYRRRTGLTGSELAKKINVSQQQISRYENGINNITFDKLIILFNALEM 66 >gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] Length = 124 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK+ L+Q+ + RTG + I + E G ++ + +A L+ + + L Sbjct: 31 EKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISVIEFL 88 >gi|123442353|ref|YP_001006332.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161719|ref|YP_004298296.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089314|emb|CAL12161.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605784|emb|CBY27282.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. palearctica Y11] gi|325665949|gb|ADZ42593.1| putative DNA-binding phage-related protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 107 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R+ LTQ++I R G + IS +E G + N+ + A L Sbjct: 35 RQAMMTELKAARQRCNLTQEDIARRAGLRKQNISRMEKGIISPNLTTLSRYAAALG 90 >gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009] gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009] Length = 286 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + ++ RK L+Q+E+ + G ++ IS E G + +I L+ D + Sbjct: 8 KYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDD 67 Query: 80 LL 81 Sbjct: 68 FF 69 >gi|322419229|ref|YP_004198452.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320125616|gb|ADW13176.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 187 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R KLT + + TGF+ + IS++E + I + +A D L + Sbjct: 7 GPRLKKLRLARKLTLQAVATETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 65 >gi|271969939|ref|YP_003344135.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270513114|gb|ACZ91392.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 414 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTL 73 R RK A +TQ E+ R AQSW+S +E + +I + LA TL Sbjct: 11 SDPAAESVGTRVRRARKRAGITQSELARRVKRAQSWVSGIENDSIPLDSIALINTLARTL 70 Query: 74 DTPLWKL 80 +L Sbjct: 71 RVHPNEL 77 >gi|296139142|ref|YP_003646385.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027276|gb|ADG78046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 203 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 24/46 (52%) Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 T ++ + G + ++S++E G + ++ +I L L+ P+ L Sbjct: 33 TLAQVADGVGLTKGYLSKVERGLAAPSVGTLIKLCEILEVPVGSLF 78 >gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 63 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R++R E +Q ++ G ++ ++ +ETG+ ++ LA P+ K+ Sbjct: 3 NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFDPSLPLAFKLARLFGEPIEKIF 60 >gi|196251088|ref|ZP_03149768.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209382|gb|EDY04161.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 46 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 27/46 (58%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 M + R EA L+Q+++ + G ++S +++ E+GK +IDN Sbjct: 1 MTLGEKIKKARTEAGLSQEQLSEKLGVSRSAVAKWESGKGLPDIDN 46 >gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 468 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 23/55 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R++ ++Q E+ + S+++++E + + ++ L Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDP 61 >gi|118588013|ref|ZP_01545423.1| transcriptional regulator, XRE family with cupin sensor domain [Stappia aggregata IAM 12614] gi|118439635|gb|EAV46266.1| transcriptional regulator, XRE family with cupin sensor domain [Stappia aggregata IAM 12614] Length = 224 Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 27/56 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R++ LT +++ + + + ++S++E +T + ++ +A L L Sbjct: 16 VGALIRARRRQLGLTLQQLGDASNLSVGYLSQVERDHATPTLGSLAGIARALGVGL 71 >gi|332365977|gb|EGJ43733.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 92 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R L Q E+ G ++ IS +E G+ T +I + +AH + + + + Sbjct: 28 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 86 >gi|329118986|ref|ZP_08247680.1| XRE family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327464859|gb|EGF11150.1| XRE family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 125 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ++ F + + +LTQ E+ RTG ++S IS L G S I+ M+ + H Sbjct: 8 KQQEAAKIDFAIMLDGLLESKQLTQTELAARTGKSKSLISRLMGGDSNPTIETMVSVLHA 67 Query: 73 LDTPLW 78 + L Sbjct: 68 VGENLV 73 >gi|311031859|ref|ZP_07709949.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 124 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + + +RK + E+ G ++S++S LE ++ ++ + +A TL+T L Sbjct: 1 MLGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQTNPSLQFLNKIAVTLETDLDF 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|307128188|ref|YP_003880219.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|306485250|gb|ADM92119.1| transcriptional activator [Streptococcus pneumoniae 670-6B] Length = 299 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|271961688|ref|YP_003335884.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270504863|gb|ACZ83141.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 241 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F R R+ L+Q ++ R G Q +S +E+G+S ++ L +++ PL + Sbjct: 3 FPQTLRATRQRRHLSQLDLALRAGTTQRHLSFMESGRSRPGRTMVVRLGESMELPLRE 60 >gi|258515642|ref|YP_003191864.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779347|gb|ACV63241.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 125 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +RK L +E+ G + I E +S + D +I+ A + L L+ Sbjct: 4 FGERLYQLRKSKNLKAEELAEFVGLKRRIIFLYEKNESKPSYDTLILFADFFNVSLDYLV 63 >gi|229014192|ref|ZP_04171313.1| Transcriptional regulator, Cro/CI [Bacillus mycoides DSM 2048] gi|228747146|gb|EEL97028.1| Transcriptional regulator, Cro/CI [Bacillus mycoides DSM 2048] Length = 75 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN +R E + +Q ++ N+ G ++ I+ +E + ++ +A L ++ + Sbjct: 9 NNLVVLRAEKRWSQTDLANQAGVSRQTIASIEANRYNPSLILAFEIASILGKEFHEVFQ 67 >gi|295839825|ref|ZP_06826758.1| regulatory protein [Streptomyces sp. SPB74] gi|197697770|gb|EDY44703.1| regulatory protein [Streptomyces sp. SPB74] Length = 189 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R R+ +LT + R+G + ++S++E ++ + ++ +AH L+T + +L Sbjct: 9 VGNAVRRRRRALELTLATVARRSGLSVPFLSQIENERARPSTRSLCAVAHALETTVDELF 68 >gi|170693398|ref|ZP_02884557.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141553|gb|EDT09722.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 229 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 34/74 (45%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P ++ + N +R E +L+ + +G +++ ++++E+ +S +I + Sbjct: 19 PRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCK 78 Query: 69 LAHTLDTPLWKLLK 82 +A L + L+ Sbjct: 79 VAAALKVSVAAFLR 92 >gi|170698980|ref|ZP_02890038.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170136087|gb|EDT04357.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 227 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223] gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223] Length = 231 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59 F N + +R + +Q+E R G +S IS+ E GKS Sbjct: 23 FERNLKQLRIDLGFSQEEFGRRIGVTKSTISQWEAGKS 60 >gi|219849656|ref|YP_002464089.1| helix-turn-helix domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219543915|gb|ACL25653.1| helix-turn-helix domain protein [Chloroflexus aggregans DSM 9485] Length = 393 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + R +R +T ++ T + IS+ E G++ + + LA L Sbjct: 1 MINQRLRQLRLARGMTLDDLAQATNRIVTRQAISKYEHGQAQPSPIVLQRLAQALGVRPT 60 Query: 79 KLL 81 LL Sbjct: 61 DLL 63 >gi|15894244|ref|NP_347593.1| Xre family DNA-binding domain-/TPR repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|15023861|gb|AAK78933.1|AE007611_1 Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|325508372|gb|ADZ20008.1| Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum EA 2018] Length = 434 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ IS +E+GKS ++D + LA L+T + Sbjct: 2 EILSLGEKIKARRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAGALNTSV 60 Query: 78 WKLLK 82 L++ Sbjct: 61 EYLME 65 >gi|327394598|dbj|BAK12020.1| hypothetical protein PAJ_1940 [Pantoea ananatis AJ13355] Length = 266 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76 R+ L ++E+ R G + W + +E G++ + + + LA L Sbjct: 31 RRTPGLRREEVAERAGISVDWYTRIEQGRANAVTHETLERLADALSMS 78 >gi|308179156|ref|YP_003918562.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307746619|emb|CBT77591.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 163 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ TQ+ + +G + LE G + +++ + ++A LD + L K Sbjct: 4 SRIAELRRVKGWTQERLATESGITVRTVQRLEAG-NDASLETISLVAKALDVQVGDLFK 61 >gi|256396188|ref|YP_003117752.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362414|gb|ACU75911.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 245 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R+ + T +++ + ++SE+E G+ + + + + L+ L Sbjct: 5 RRLLGDVLRGRRQRSGRTLRQLAATARVSPGYLSEVERGQKEPSSELLAAICDALEVKLS 64 Query: 79 KLL 81 +L Sbjct: 65 DVL 67 >gi|228995761|ref|ZP_04155422.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17] gi|229003381|ref|ZP_04161205.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4] gi|228757871|gb|EEM07092.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4] gi|228764005|gb|EEM12891.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17] Length = 73 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 4 QVRRKDVKNQIYALRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 63 Query: 76 PLWKLL 81 + KL Sbjct: 64 TVDKLF 69 >gi|160941964|ref|ZP_02089287.1| hypothetical protein CLOBOL_06856 [Clostridium bolteae ATCC BAA-613] gi|158435128|gb|EDP12895.1| hypothetical protein CLOBOL_06856 [Clostridium bolteae ATCC BAA-613] Length = 87 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISE-----LETGKSTINIDNMIIL 69 +R + N +RK KL+QKE+ + + SE +E GK + + IL Sbjct: 7 SQPQRNLIGNQIFKLRKSRKLSQKEMAAQLQVQGYYFSELTILRIEKGKRLVTDIELKIL 66 Query: 70 AHTLDTPLWKLL 81 LL Sbjct: 67 CDYFRITPNDLL 78 >gi|158317815|ref|YP_001510323.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158113220|gb|ABW15417.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 313 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R+ +LTQ + R + IS +E G+S + +I+L+ L PL + Sbjct: 38 VGALLRGWRERRRLTQLGLAERANVSTRRISFVENGRSRPTSEMIIMLSEHLGVPLRE 95 >gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 244 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 23/55 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +R E ++Q+++ R G ++ IS E + + + +A + Sbjct: 3 LGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILREIAKIFNVS 57 >gi|114770339|ref|ZP_01447877.1| hypothetical protein OM2255_11900 [alpha proteobacterium HTCC2255] gi|114549176|gb|EAU52059.1| hypothetical protein OM2255_11900 [alpha proteobacterium HTCC2255] Length = 468 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ + IR L+Q + N + S+++ +E + I + ++ L+ T + Sbjct: 4 QKIFAGPRVKKIRNSIGLSQSAMANELDISPSYLNLIERNQRPITVQLILKLSKTYNISP 63 Query: 78 WKL 80 +L Sbjct: 64 EEL 66 >gi|89894127|ref|YP_517614.1| hypothetical protein DSY1381 [Desulfitobacterium hafniense Y51] gi|89333575|dbj|BAE83170.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 55 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+++ G + I +E GK ++ I + L L L Sbjct: 1 MSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLF 47 >gi|15597508|ref|NP_251002.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116050256|ref|YP_790927.1| XRE family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891714|ref|YP_002440581.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254240751|ref|ZP_04934073.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192] gi|9948345|gb|AAG05700.1|AE004657_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115585477|gb|ABJ11492.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa UCBPP-PA14] gi|126194129|gb|EAZ58192.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192] gi|218771940|emb|CAW27719.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 193 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 D ++ +R +N +R + L+ + +G +++ ++++E+G+S +I + Sbjct: 2 HTEPDDLIGQR--VAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 59 Query: 69 LAHTLDTPLWKLL 81 +A L + L Sbjct: 60 IAQGLKVSVAAFL 72 >gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] Length = 66 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +R K+TQ ++ + ++ ++ +E GK ++ LA + + +L Sbjct: 3 NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFDPSLPTAFRLAAVFNCSIEELF 60 >gi|331019614|gb|EGH99670.1| helix-turn-helix domain-containing protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 135 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F + +R LTQK + + + +++++S+LE +S++ +D + ++ TL+ Sbjct: 4 KTAFAAVLKAMRSSRGLTQKHLSDAS--SRTYLSKLERAQSSLTLDKLQAISQTLELSPL 61 Query: 79 KLL 81 L+ Sbjct: 62 TLV 64 >gi|326802770|ref|YP_004320588.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651230|gb|AEA01413.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 194 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N ++ R+ A LT + + + G + S + E GKS +N +++ LA Sbjct: 4 LANRLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSEVNQESLTKLAELYGVS 58 >gi|322370379|ref|ZP_08044938.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus DX253] gi|320550087|gb|EFW91742.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus DX253] Length = 179 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R + LTQ E+ R G +Q I+ +E + + + + L+ +++ Sbjct: 7 QDLREHRTDLGLTQSELAERAGVSQPLIARIEGDDVDPRLSTLRRIVNALEESEGDIVR 65 >gi|294509118|ref|YP_003566046.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352042|gb|ADE72366.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 149 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R+E LTQ ++ + IS+ E+ + + LA L+ LL+ Sbjct: 4 GEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDYLLR 63 >gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 386 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L I R R L+ E+ + G + IS+ E G ST + I L LD Sbjct: 8 VLDSNKIIPAKIREARISRGLSLSELSTKIGVSSQAISQYELGISTPSALTFIKLVEELD 67 Query: 75 TP 76 P Sbjct: 68 FP 69 >gi|227892048|ref|ZP_04009853.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227866158|gb|EEJ73579.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 183 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +F + + +TQ E+ R+G +++ I++ GK D + LA L+ Sbjct: 3 VFQKRLKEAIENMGITQAELARRSGISRASITDYLKGKYEAKQDKIYPLARALNVS 58 >gi|224282243|ref|ZP_03645565.1| putative phage regulatory protein [Bifidobacterium bifidum NCIMB 41171] gi|311063583|ref|YP_003970308.1| XRE family transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313139384|ref|ZP_07801577.1| predicted protein [Bifidobacterium bifidum NCIMB 41171] gi|310865902|gb|ADP35271.1| XRE family transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313131894|gb|EFR49511.1| predicted protein [Bifidobacterium bifidum NCIMB 41171] Length = 113 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + ++ + Q ++ R G Q IS+ G+ + +A L T LL Sbjct: 5 LGDRMRKLMRQHGINQSQLAARAGTTQPNISKYLAGEREPTSSTLANIATALHTTSEFLL 64 >gi|254474388|ref|ZP_05087774.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028631|gb|EEB69466.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 462 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R LTQKE + G + +++++E ++ ++ LA + Sbjct: 4 QKLYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDV 63 Query: 78 WKL 80 +L Sbjct: 64 TEL 66 >gi|190570724|ref|YP_001975082.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019732|ref|ZP_03335537.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356996|emb|CAQ54385.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994773|gb|EEB55416.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 23/61 (37%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RN R TQK++ + I + E G I+I + LA L T Sbjct: 14 KVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKLYELAEALSTTARD 73 Query: 80 L 80 L Sbjct: 74 L 74 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R TQ+++ ++ G I E E G+S ++++ + +A L + LL Sbjct: 167 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRSAVSLEMLDEIAKVLLINITDLL 226 >gi|171742425|ref|ZP_02918232.1| hypothetical protein BIFDEN_01536 [Bifidobacterium dentium ATCC 27678] gi|283456489|ref|YP_003361053.1| XRE family transcriptional regulator [Bifidobacterium dentium Bd1] gi|171278039|gb|EDT45700.1| hypothetical protein BIFDEN_01536 [Bifidobacterium dentium ATCC 27678] gi|283103123|gb|ADB10229.1| XRE family transcriptional regulator [Bifidobacterium dentium Bd1] Length = 143 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAHTLDTPLWKLL 81 R IR+E LTQ+ + TG Q IS ETG ++ +D L+ L L Sbjct: 83 LRRIRRERHLTQRMLSALTGIPQPNISWFETGYRPVSQMYLDTARRLSEALQCDPVDFL 141 >gi|168205968|ref|ZP_02631973.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662549|gb|EDT15232.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 365 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK+ K++Q++ + A+S +S E KS I ++ ++ ++ + +LL Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69 >gi|149923376|ref|ZP_01911783.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149815790|gb|EDM75314.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 139 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + F + R +RK LTQ+ + R + I LE G + ++ ++ LA L Sbjct: 19 VDAHAFGFHIRTLRKARGLTQEVLAERARLSADTIRRLEAGSFSPSMKTLVSLARGLHLR 78 Query: 77 L 77 L Sbjct: 79 L 79 >gi|134096687|ref|YP_001102348.1| regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909310|emb|CAL99422.1| regulator [Saccharopolyspora erythraea NRRL 2338] Length = 436 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ++ +R+ ++Q++I TG +QS +SE+ G+ + D + +A L P Sbjct: 14 YKQLRR-HGVSQRQIAASTGQSQSEVSEILKGRQVMAYDVLARIADGLGIP 63 >gi|114762993|ref|ZP_01442423.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544317|gb|EAU47325.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 127 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R+ R +TQ+++ + G I + ETG + ++ + +A L+ P Sbjct: 9 VGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADALEVP 63 >gi|150377745|ref|YP_001314340.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032292|gb|ABR64407.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 90 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F + R RK TQ E+ R+G + +I ELE+GK + ++ +I+A T+ + L Sbjct: 8 FGDAVREKRKVLGWTQAELATRSGTGERFIVELESGKRSCQLEKALIVARTVGIEIGDL 66 >gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1] gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri JR1] Length = 342 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ R A L+Q+ + + G + IS+ E G+ T +I ++ L + Sbjct: 1 MTIGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDY 60 Query: 80 LLK 82 + Sbjct: 61 FFR 63 >gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 108 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F + +RK+ K+TQ E+ G + IS+ E+ + + +A + Sbjct: 1 MSFGQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYEPEMTAIKEIADFFNVSADY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|332366265|gb|EGJ44020.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 116 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + K++Q+E+ + G +I++LE + I ++ + + L + Sbjct: 13 QKVKYFRTKNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVINALQMTSEEFF 70 >gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 119 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++R+ ++Q+E+ G ++ IS E G+ + + +A+ Sbjct: 2 EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 >gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] Length = 177 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R+ +Q ++ +G I + E G D + +A L Sbjct: 1 MVGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALG 54 >gi|313669549|ref|YP_004049974.1| hypothetical protein Sulku_2772 [Sulfuricurvum kujiense DSM 16994] gi|313156746|gb|ADR35421.1| protein of unknown function DUF955 [Sulfuricurvum kujiense DSM 16994] Length = 354 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 26/55 (47%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +F RK A L+ + + ++ G +Q+ I++ E + + ++ L+ L Sbjct: 1 MFGERIARARKTAGLSLRGLADQVGVSQTAIAKYEKNQIHPDSQMLLKLSQALGV 55 >gi|258647029|ref|ZP_05734498.1| DNA-binding protein [Dialister invisus DSM 15470] gi|260404470|gb|EEW98017.1| DNA-binding protein [Dialister invisus DSM 15470] Length = 249 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R RK+ ++ +++ + + S +S+ E+G+ ++I + +AH P+ + Sbjct: 19 QILGKRIRYYRKQKHMSLRQLADIICKSVSTLSKYESGQIVLDITTLYDIAHAFHLPVEQ 78 Query: 80 LL 81 LL Sbjct: 79 LL 80 >gi|304315632|ref|YP_003850777.1| hypothetical protein Tthe_0104 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777134|gb|ADL67693.1| helix-turn-helix domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 439 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + IRK K+ Q+E+++ + +IS +E+ +S ++ID +A + +L Sbjct: 7 GEKVKKIRKMLKIKQRELQDE-NITRGFISMIESNRSRMSIDTAKKIAKRFNERAKEL 63 >gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 62 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ + +Q E+ R G ++ I+ LETGK ++ +A + + Sbjct: 1 MRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 56 >gi|167840672|ref|ZP_02467356.1| putative transcriptional regulatory protein [Burkholderia thailandensis MSMB43] Length = 186 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ R ++T K + + G ++S +S++E G +T ++ + LA LDT + L+ Sbjct: 2 RLRHARMVQQMTLKALAEQAGCSESLLSKVEGGHATPSLATLHRLALALDTNVAALV 58 >gi|148992305|ref|ZP_01822028.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|147928931|gb|EDK79943.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] Length = 70 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 2 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 60 >gi|161523788|ref|YP_001578800.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351451|ref|YP_001947079.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341217|gb|ABX14303.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189335473|dbj|BAG44543.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 34 IVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 93 Query: 81 LK 82 L+ Sbjct: 94 LR 95 >gi|15900493|ref|NP_345097.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|149010796|ref|ZP_01832167.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|14972058|gb|AAK74737.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|147765277|gb|EDK72206.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] Length = 70 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 2 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 60 >gi|163941532|ref|YP_001646416.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863729|gb|ABY44788.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 86 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 27/57 (47%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 + IR + ++ +E + G + ++S++E G+ I+ + +A + + P Sbjct: 20 KEIRMKLGISIEEAAKKLGISGGYLSQIENGQRQISTERADQIAKLYEKKKEDIFLP 76 >gi|126462571|ref|YP_001043685.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|332558597|ref|ZP_08412919.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides WS8N] gi|126104235|gb|ABN76913.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17029] gi|332276309|gb|EGJ21624.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 428 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R R + L Q ++ G + S+++ +E + I + + LA L Sbjct: 1 MPMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60 Query: 76 PLWKL 80 L Sbjct: 61 EAQTL 65 >gi|331084883|ref|ZP_08333971.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410977|gb|EGG90399.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 121 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++RK ++Q+E+ ++ IS+ E+ +S + +++L+ L +L+ Sbjct: 3 FNEKLISLRKSKGMSQEELGVELNVSRQTISKWESCQSYPDFQRLVLLSDFFGLTLDELV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|330503401|ref|YP_004380270.1| helix-turn-helix domain-containing protein [Pseudomonas mendocina NK-01] gi|328917687|gb|AEB58518.1| helix-turn-helix domain-containing protein [Pseudomonas mendocina NK-01] Length = 96 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R L Q+ + G +QS+IS +E GK +I+ + +A + LL Sbjct: 11 IKNLRNLKDLPQEGL----GPSQSYISAIERGKWKPSIEKVEQIAEVVGIHPLTLL 62 >gi|328885617|emb|CCA58856.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 468 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 23/55 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R++ ++Q E+ + S+++++E + + ++ L Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDP 61 >gi|320334222|ref|YP_004170933.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755511|gb|ADV67268.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 64 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N R +R E TQ ++ N ++ ++ LETG+ ++ +A T PL + P Sbjct: 3 NRIRVLRTERGWTQADLANHLDVSRQTVNALETGRYDPSLPLAFRIARTFALPLEAIFTP 62 >gi|319744446|gb|EFV96803.1| phage associated transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 74 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQK + N F+ + +++E G+ + D ++ L+ + LL Sbjct: 3 QRIRDLREDHDFTQKFVANLLSFSHTNYAKIERGEVALTADVLVQLSKLYNVSTDYLL 60 >gi|319793072|ref|YP_004154712.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595535|gb|ADU36601.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS] Length = 503 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 30/58 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R++R+E L+Q + + G + S+++++E + + + ++ L TL Sbjct: 2 KKTFMGVRLRSLREERGLSQLALAQQLGLSPSYLNQIEQNQRPLTVPVLLRLHATLGV 59 >gi|315633741|ref|ZP_07889031.1| DNA-binding protein [Aggregatibacter segnis ATCC 33393] gi|315477783|gb|EFU68525.1| DNA-binding protein [Aggregatibacter segnis ATCC 33393] Length = 140 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +Q+E+ + + + +++E G++ +++D + +A LD + +L+ Sbjct: 5 EKIRKLRETKHWSQEEMAEKMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDIVELI 62 >gi|312888716|ref|ZP_07748283.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298819|gb|EFQ75921.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 191 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R+E LT +E+ ++ ++ IS++E ++ ++ +I + LD L K K Sbjct: 12 RIKERRREKNLTIQELADKASVSKGLISQIENSRTIPSLMVLIEIIKGLDVDLNKFFK 69 >gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 191 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R+ + E+ +R G +++ I ++E G S+ + L+ + L+ Sbjct: 13 GARIRIERESRSWSLSELADRAGVSRTMIHKIERGDSSPTATMLGRLSGAFGISMSTLI 71 >gi|295090297|emb|CBK76404.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 105 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 29/64 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E+ + +R + +++ ++ G +S+I + +G+S ++N + + L+ Sbjct: 2 EKKFIGDRITELRIKKNVSEYQMSLDLGKNKSYIQSISSGRSLPTMENFLEICEYLEVTP 61 Query: 78 WKLL 81 + Sbjct: 62 CQFF 65 >gi|294813424|ref|ZP_06772067.1| helix-hairpin-helix DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294326023|gb|EFG07666.1| helix-hairpin-helix DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 493 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R P + ++F R +R+E ++ +E G+ ++ +S++E G ++ Sbjct: 64 RCMPCKEHVGMSASLVFGPEMRRLRQERGISLREFATLVGYHKAHLSKVERGLRRASV 121 >gi|297545444|ref|YP_003677746.1| helix-turn-helix domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843219|gb|ADH61735.1| helix-turn-helix domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 438 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L Q ++ F++ +IS +E GK + ++ + +A L+ P+ L Sbjct: 6 LGRRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64 >gi|229002562|ref|ZP_04160621.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock3-17] gi|229009341|ref|ZP_04166620.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock1-4] gi|228751932|gb|EEM01680.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock1-4] gi|228758542|gb|EEM07680.1| transcriptional regulator/TPR domain protein [Bacillus mycoides Rock3-17] Length = 422 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDT 75 R IR + TQ E+ +G + +++S +E G+ + + +A LD Sbjct: 3 VGERIRQIRIHKEFTQGEL--VSGICSITYLSRIENGQIKPSTSFLEKVAEKLDV 55 >gi|228955292|ref|ZP_04117300.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961271|ref|ZP_04122890.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229049716|ref|ZP_04194273.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|229072514|ref|ZP_04205716.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|229082273|ref|ZP_04214736.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|229112472|ref|ZP_04242009.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|229130284|ref|ZP_04259243.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|229142358|ref|ZP_04270877.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|229147576|ref|ZP_04275921.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|229153219|ref|ZP_04281398.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|229181321|ref|ZP_04308651.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|229193309|ref|ZP_04320259.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228590110|gb|EEK47979.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228602214|gb|EEK59705.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|228630318|gb|EEK86968.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|228635866|gb|EEK92351.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|228641128|gb|EEK97440.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|228653217|gb|EEL09096.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|228670852|gb|EEL26159.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|228700705|gb|EEL53228.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|228710490|gb|EEL62463.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|228722629|gb|EEL74017.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|228798392|gb|EEM45386.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804425|gb|EEM51036.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 79 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|222152322|ref|YP_002561497.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113133|emb|CAR40543.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 67 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE K++Q E+ + I LE G+ +++ LA + + + Sbjct: 3 NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNASLELAFKLATYFNLSIEDIF 60 >gi|221200113|ref|ZP_03573156.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221206734|ref|ZP_03579746.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221211293|ref|ZP_03584272.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221168654|gb|EEE01122.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221173389|gb|EEE05824.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221180352|gb|EEE12756.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 227 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 34 IVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 93 Query: 81 LK 82 L+ Sbjct: 94 LR 95 >gi|189465237|ref|ZP_03014022.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM 17393] gi|189437511|gb|EDV06496.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM 17393] Length = 191 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +++ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|206974554|ref|ZP_03235470.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222096804|ref|YP_002530861.1| transcriptional regulator [Bacillus cereus Q1] gi|206747197|gb|EDZ58588.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221240862|gb|ACM13572.1| transcriptional regulator [Bacillus cereus Q1] Length = 67 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M FV + R + +TQ+++ G + IS LE GK ++ +A L + + + Sbjct: 1 MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|160938164|ref|ZP_02085520.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] gi|158438968|gb|EDP16724.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] Length = 359 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++R+ +TQ+++ G + +S+ ETG S +I + LA L+T + LL Sbjct: 5 LGPRIASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNVDTLL 64 Query: 82 K 82 + Sbjct: 65 Q 65 >gi|254235322|ref|ZP_04928645.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719] gi|126167253|gb|EAZ52764.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719] Length = 193 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 D ++ +R +N +R + L+ + +G +++ ++++E+G+S +I + Sbjct: 2 HTEPDDLIGQR--VAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 59 Query: 69 LAHTLDTPLWKLL 81 +A L + L Sbjct: 60 IAQGLKVSVAAFL 72 >gi|56698522|ref|YP_168898.1| anaerobic benzoate catabolism transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680259|gb|AAV96925.1| DNA-binding/shikimate kinase domain protein [Ruegeria pomeroyi DSS-3] Length = 305 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P RD+ A L R R R+ + ++ + +G + ++++LE G+ I Sbjct: 13 PNSARDQAEAEVADLIAR--VGERVRAARQRRGIPRRVLSEISGVSPRYLAQLEAGEGNI 70 Query: 62 NIDNMIILAHTLD 74 +I + +A LD Sbjct: 71 SIGLLQRVATALD 83 >gi|328947690|ref|YP_004365027.1| hypothetical protein Tresu_0801 [Treponema succinifaciens DSM 2489] gi|328448014|gb|AEB13730.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 109 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + IRKE LTQ ++ + ++ + +E + + N+ + L + L Sbjct: 10 LGENVKRIRKEQNLTQFQLAEKAELSEETVKNIELSRCWTSDKNLAKITKALGVDISFLF 69 Query: 82 KP 83 P Sbjct: 70 LP 71 >gi|313885531|ref|ZP_07819281.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619261|gb|EFR30700.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] Length = 213 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTP 76 E F N + +R + +TQ+EI + G + +S+ E G++T N N+ +A Sbjct: 3 ENNFFGKNLKYLRNKKGITQQEIADLIGRKSTGSVSDWEAGRTTPNAGNISKIASYFGLK 62 Query: 77 LWKLLK 82 + +++ Sbjct: 63 IDAMVE 68 >gi|228943045|ref|ZP_04105546.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955927|ref|ZP_04117864.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968662|ref|ZP_04129641.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228976622|ref|ZP_04137065.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783091|gb|EEM31227.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791025|gb|EEM38647.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228803754|gb|EEM50436.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816630|gb|EEM62754.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 133 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E IF N RN+R L+ + G S IS E G N D + ++ Sbjct: 5 EDNIFGRNLRNLRNLQGLSLNALGKELGVTGSAISSWELGNKEPNFDMLKKVSGFFQVST 64 Query: 78 WKLL 81 +L Sbjct: 65 DYML 68 >gi|229100661|ref|ZP_04231509.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] gi|229107528|ref|ZP_04237280.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|229119263|ref|ZP_04248568.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228664188|gb|EEL19724.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228675920|gb|EEL31013.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|228682754|gb|EEL36784.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] Length = 64 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R E ++Q + ++ ++ I+ +E K ++ LA L T + KL Sbjct: 3 NQIYELRTENNISQGALADKCSVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|237731517|ref|ZP_04561998.1| transcriptional regulator [Citrobacter sp. 30_2] gi|226907056|gb|EEH92974.1| transcriptional regulator [Citrobacter sp. 30_2] Length = 104 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PL 77 + + R R ++TQ ++ R+G + +S LETGK + +N++ +A L L Sbjct: 13 KLLCDRLRKERLAQQMTQADVAARSGVGVNTVSNLETGK-NVGFENLVKVAMVLGYGDAL 71 Query: 78 WKLLKP 83 L KP Sbjct: 72 EGLFKP 77 >gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] Length = 358 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE TQ ++ G +S+ ETGKS + + L+ L L +L Sbjct: 14 RKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGITLSELF 65 >gi|239617046|ref|YP_002940368.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] gi|239505877|gb|ACR79364.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] Length = 351 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + + R ++ +++ + G + IS+ E + + +I L+ L+ + Sbjct: 1 MSIGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEY 60 Query: 80 LLKP 83 +P Sbjct: 61 FFRP 64 >gi|254385422|ref|ZP_05000750.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194344295|gb|EDX25261.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 276 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P + A R F R R +++Q E+ G Q +S +E+G+S ++ Sbjct: 2 APTTAAAAERRPSPFSREVRRWRALRRMSQLELAALAGTTQRHLSFIESGRSAPGRAMVV 61 Query: 68 ILAHTLDTPLWK 79 LA +L L + Sbjct: 62 RLAESLALSLRE 73 >gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] Length = 180 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + + +RK +TQ+E+ G S + ET + + +I +A L Sbjct: 35 LLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIADFFCVSTDFL 94 Query: 81 L 81 L Sbjct: 95 L 95 >gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 167 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+++ + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 3 LADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62 >gi|160893603|ref|ZP_02074387.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] gi|156864588|gb|EDO58019.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] Length = 145 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R L+QK++ + G I+ E G+ + LA L+ Sbjct: 2 KSFGAKVKEQRGNLGLSQKQLAEKAGMGIRTITSYELGERKPYQAQLYKLAKALEVSTEY 61 Query: 80 L 80 L Sbjct: 62 L 62 >gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 474 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R +R LT ++ G A S +S +E G+ + + +A L+ L Sbjct: 2 DTLTIGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTLLQAIARALECKL 61 Query: 78 WKLL 81 ++L Sbjct: 62 DQIL 65 >gi|331677084|ref|ZP_08377780.1| putative transcriptional regulator [Escherichia coli H591] gi|331075773|gb|EGI47071.1| putative transcriptional regulator [Escherichia coli H591] Length = 89 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 IR++ L+Q+ +G S IS +E K + I + L L + Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67 >gi|297157619|gb|ADI07331.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 104 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R L+Q E+ R G Q IS +E G + I + LA LD+ L L P Sbjct: 46 RTALGLSQTELAERCGMKQPQISRIEGGGTVPTIPLLRRLARALDSDLTINLTP 99 >gi|262042671|ref|ZP_06015825.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039896|gb|EEW41013.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 200 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 SD R + + RK K++ E+ R ++ + E+E + +I + LA Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71 Query: 72 TLDTPLWKLL 81 L + ++ Sbjct: 72 ALGVSVADIV 81 >gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 181 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 25/51 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +R+ + RTG +++ + ++E G+S+ + + +A + P Sbjct: 12 LKQLRQANGWSLTLAAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62 >gi|291612556|ref|YP_003522713.1| XRE family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582668|gb|ADE10326.1| transcriptional regulator, XRE family [Sideroxydans lithotrophicus ES-1] Length = 100 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R +L+Q E+ R + S++SELETG T +++ + + P + Sbjct: 1 MLNRALKLLRTFHQLSQVELARRLEISNSYLSELETGAKTPSVEILEQYSVVFKLPASSI 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|251788540|ref|YP_003003261.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537161|gb|ACT05782.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 77 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R R +TQ + G QS+I+++E G+ ++I + ++ L LL P Sbjct: 16 LRAARIAQGVTQATLAQAFGKPQSFIAKIENGERRLDIVEFMHISRLLSLDPIALLHP 73 >gi|254786316|ref|YP_003073745.1| Helix-turn-helix [Teredinibacter turnerae T7901] gi|237686383|gb|ACR13647.1| Helix-turn-helix [Teredinibacter turnerae T7901] Length = 73 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 NN R R EA +++Q + G + IS +E K + +++ +AH Sbjct: 8 NNIRRFRFEASEMSQASLAKAAGVTRQTISAIEANKYSPSLELAFRIAHVFGV 60 >gi|311739278|ref|ZP_07713115.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305704|gb|EFQ81770.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 86 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 PR K+ +P +A++ + F R+E + Q+++ + G ++S + +E G + + Sbjct: 7 PRHKQGKPAGDNAVI---LGLGAQFAERRRELGILQQQLADAAGISRSTLHTIEHGGAGV 63 Query: 62 NIDNMIILAHTLDTPL 77 + + +A L + Sbjct: 64 RWEKITAVAEALGLEM 79 >gi|255279936|ref|ZP_05344491.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269709|gb|EET62914.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 642 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F R++ TQ E+ + ++S + ETG + + +I + LD L Sbjct: 2 KTKFCEYLTMYRRQRGYTQAEMAEKLEISRSTYTNYETGNRAPDFETLIQIGDILDCSLD 61 Query: 79 KLL 81 +L Sbjct: 62 ELF 64 >gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 132 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP P L + R+ +Q + R G +Q+ +++LE G S Sbjct: 1 MPIEAICIPVSLSGKLPAMSALGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTSA 60 Query: 61 INIDNMIILAHTLDTPL 77 +I +A L Sbjct: 61 ATT-KLIPIARALKVNP 76 >gi|152972029|ref|YP_001337175.1| helix-turn-helix motif-containing protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956878|gb|ABR78908.1| putative regulator, helix-turn-helix motif [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 200 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 SD R + + RK K++ E+ R ++ + E+E + +I + LA Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71 Query: 72 TLDTPLWKLL 81 L + ++ Sbjct: 72 ALGVSVADIV 81 >gi|332360443|gb|EGJ38254.1| cro/CI family zinc-binding transcriptional regulator [Streptococcus sanguinis SK355] Length = 377 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ IF + R LT+KE+ RTG ++ IS E GK+ ++ + LD P Sbjct: 2 EQGIFSPSKLTKARIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFP 61 >gi|322374701|ref|ZP_08049215.1| transcriptional regulator, MerR family [Streptococcus sp. C300] gi|321280201|gb|EFX57240.1| transcriptional regulator, MerR family [Streptococcus sp. C300] Length = 110 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK+ K+TQ E+ + ++I +E I ++ + + L+ + Sbjct: 13 RIRYLRKQKKMTQWELSEKANLGINYIYNIENKNLNIKLETLEKIIIALEVTEAEFF 69 >gi|322375254|ref|ZP_08049767.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279517|gb|EFX56557.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 377 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ IF + R LT+KE+ RTG ++ IS E GK+ ++ + LD P Sbjct: 2 EQGIFSPSKLTKARIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFP 61 >gi|307250998|ref|ZP_07532924.1| hypothetical protein appser4_17620 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857026|gb|EFM89156.1| hypothetical protein appser4_17620 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 137 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R+ +L+Q+ + ++ G + + +++E G+ N+ + ++ + + +LL Sbjct: 5 EKIRHLRETHQLSQEVMADKLGMSVTGYAKIERGEVRSNLPRLEQISEAFNMDICELL 62 >gi|300716262|ref|YP_003741065.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299062098|emb|CAX59214.1| Predicted transcriptional regulator [Erwinia billingiae Eb661] Length = 186 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 26/55 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++R + + +TG +++ + ++E G+S+ + + +A + P Sbjct: 6 LGQTLKSLRTSREWSLTMAAEQTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 60 >gi|295980926|emb|CBJ57174.1| hypothetical protein [Streptococcus pneumoniae] Length = 74 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRN-RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ LTQ+ + +S S++E+G I+ID++I LA + L L+ Sbjct: 3 KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRIISIDDLITLADFYNVSLDYLV 61 >gi|289773071|ref|ZP_06532449.1| DNA-binding protein [Streptomyces lividans TK24] gi|289703270|gb|EFD70699.1| DNA-binding protein [Streptomyces lividans TK24] Length = 489 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R++R+ A LTQ ++ R G+ S +S LE G + + L L+T Sbjct: 31 FGRQLRSLRRAAGLTQLQLGLRVGYHHSVVSRLEAGLREPPVGLVRRLDAVLET 84 >gi|259047792|ref|ZP_05738193.1| Xre family toxin-antitoxin system, antitoxin component [Granulicatella adiacens ATCC 49175] gi|259035469|gb|EEW36724.1| Xre family toxin-antitoxin system, antitoxin component [Granulicatella adiacens ATCC 49175] Length = 64 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +RK A L Q+++ G ++ I +E K ++ + +A L + ++ Sbjct: 3 NNIKQLRKAAGLRQEDMAKTLGVSRQTIIAIENDKYNPTLELAMKIARLLQLNVEEIF 60 >gi|257063020|ref|YP_003142692.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790673|gb|ACV21343.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 215 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMIILAHTLDTPLWKLL 81 N + +RK + LTQ+++ +G + I + E + + +++ + +A L LL Sbjct: 151 NLKRLRKLSGLTQEQLAQLSGISVRTIQQYEQRRKDVNKASLETAVAIATVLHCSPSDLL 210 Query: 82 K 82 + Sbjct: 211 E 211 >gi|237733222|ref|ZP_04563703.1| predicted protein [Mollicutes bacterium D7] gi|229383766|gb|EEO33857.1| predicted protein [Coprobacillus sp. D7] Length = 189 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK L Q+E+ G S IS E+ + I I+++ L+ + + L K Sbjct: 4 GEKIHELRKNKGLLQEELGTLIGVDTSVISRWESSQRQIKIEDLTKLSDLFEVSVDYLAK 63 >gi|268592289|ref|ZP_06126510.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312068|gb|EFE52521.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 106 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R +RK+ ++ +++ G +Q S E G+ I++D + ++ LD + + Sbjct: 7 KIVGARIRTLRKDQNMSIQQLSTLLGISQQHQSRHELGEIRIHVDTLYSISEILDLDIQE 66 Query: 80 LL 81 L+ Sbjct: 67 LI 68 >gi|221639612|ref|YP_002525874.1| Helix-turn-helix domain-containing protein [Rhodobacter sphaeroides KD131] gi|221160393|gb|ACM01373.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131] Length = 428 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R R + L Q ++ G + S+++ +E + I + + LA L Sbjct: 1 MPMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60 Query: 76 PLWKL 80 L Sbjct: 61 EAQTL 65 >gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] Length = 86 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE N + +R E +Q ++ R G ++ ++ +ETGK ++ +A P Sbjct: 17 REDAAMKNRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYDPSLPLAFRIARVFGLP 76 Query: 77 LWKLLK 82 + + + Sbjct: 77 IEAIFE 82 >gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] Length = 227 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R I RKE LTQ+++ G IS+ E GKS + L L+ L Sbjct: 4 QRKI-GIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDPSLYKPLCDILEINL 62 Query: 78 WKLL 81 +L Sbjct: 63 IELF 66 >gi|149003138|ref|ZP_01828047.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|237651078|ref|ZP_04525330.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus pneumoniae CCRI 1974] gi|237821191|ref|ZP_04597036.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus pneumoniae CCRI 1974M2] gi|147758879|gb|EDK65875.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] Length = 207 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R++ +L+QKEI GF+ +E G+S I + LA + LL Sbjct: 2 NRLKELRQKNELSQKEIAEILGFSLRSFQRMENGESQIKPEKAQQLADFFGVSVGYLL 59 >gi|126733799|ref|ZP_01749546.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Roseobacter sp. CCS2] gi|126716665|gb|EBA13529.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Roseobacter sp. CCS2] Length = 68 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R +AKLTQ E+ + G ++ I+ +E G T + + LA L + L Sbjct: 9 LRAHRTQAKLTQAELADLVGVSRKTINTIENGVFTPSTTLALTLADQLGCSVHDLF 64 >gi|116871799|ref|YP_848580.1| DNA-binding domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740677|emb|CAK19797.1| DNA-binding domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 67 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + IR E ++Q ++ ++ I +E GK +++ + +A + ++ K Sbjct: 5 NKVKEIRTEKGISQTDLALTLEVSRQTIHAIEKGKYNPSLELSLKMAQYFHLTIEEIFK 63 >gi|116490218|ref|YP_809762.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|290889597|ref|ZP_06552687.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429] gi|116090943|gb|ABJ56097.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] gi|290480795|gb|EFD89429.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429] Length = 178 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + ++ R LTQ ++ + + +S E GK+ NI + L L Sbjct: 1 MSLGESLKSARNAVGLTQDQVAKKMYVTRQTVSRWEQGKTLPNIYVLRELKQLYGLSLDN 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|126698483|ref|YP_001087380.1| putative phage regulatory protein [Clostridium difficile 630] gi|115249920|emb|CAJ67740.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 110 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F N R +RK+ LTQ E+ + S I+ LET K ++++ + D + L Sbjct: 1 MFSNRLRELRKQKGLTQMELAKLLNCSLSKIAMLETDKRDPVKEDLLRFSEIFDVSIDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|91792783|ref|YP_562434.1| transciptional regulator [Shewanella denitrificans OS217] gi|91714785|gb|ABE54711.1| transcriptional regulator, XRE family [Shewanella denitrificans OS217] Length = 69 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 NN R +R +TQK++ + G + + +E K + +++ +A PL ++ + Sbjct: 5 NNVRTLRFLQGEMTQKQLADVIGVTRQTVMAIEASKYSPSLEVAFKIAAVFHLPLEQVFQ 64 >gi|322390898|ref|ZP_08064406.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] gi|321142411|gb|EFX37881.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] Length = 108 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 25/54 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R ++ +TQ+++ + ++ +LE + I I + + L+ L Sbjct: 10 KRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIEALNVDL 63 >gi|320330709|gb|EFW86684.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 119 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E LT + + G +S++E + ++D + L+ L T +L Sbjct: 4 GAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSEL 61 >gi|312897912|ref|ZP_07757326.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] gi|310621007|gb|EFQ04553.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] Length = 125 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+E ++Q ++ +TG+ ++S I+++E GK I+ + + A L L+ Sbjct: 6 ERIRRLRQENNMSQDKLAKKTGYTSRSTINKIEAGKIDISRAKIKVFADALGVTPAYLM 64 >gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 196 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +R+E K+ Q ++ G IS E G+ + ++ LA + L Sbjct: 10 LMSQRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFL 69 Query: 81 L 81 L Sbjct: 70 L 70 >gi|291003078|ref|ZP_06561051.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 277 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + + +R A LT ++ +R G+ Q +S++E+ K + ID +I LA Sbjct: 8 RRVLASELKRLRLSAGLTHVDVAHRLGWQQGKVSKIESAKQGVGIDAVIALAEVCGATPQ 67 Query: 79 K 79 + Sbjct: 68 Q 68 >gi|259047659|ref|ZP_05738060.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035850|gb|EEW37105.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 138 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 27/54 (50%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +RK +Q+EI + ++ + E+G++ +I+ ILA + L++ Sbjct: 2 LRKLKDFSQEEIAEKIDISRQAYGKWESGETIPDIEKCAILADVYGVTIDSLIR 55 >gi|253569690|ref|ZP_04847099.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840071|gb|EES68153.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 91 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 23/44 (52%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E +TQ+ + + Q ++S++ G+ ++++ + + + L Sbjct: 45 ELSMTQRALAEKMNCTQQYVSKVLKGRENLSLETLCKIENALGI 88 >gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 296 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +++RK TQKE+ + G Q+ ++ E G + + + +A + L LL Sbjct: 5 LANRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGTRIPDTEKLNKMADLFEVTLDYLL 64 >gi|262194471|ref|YP_003265680.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077818|gb|ACY13787.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 N R+ RK LTQ++ R + +E G + ++ + LA Sbjct: 10 GNAVRDGRKAFGLTQEQAAERLDICVDYYGRVERGAAIPSVSMLRRLAVAFG 61 >gi|224537568|ref|ZP_03678107.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus DSM 14838] gi|224520810|gb|EEF89915.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus DSM 14838] Length = 191 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +++ R+G A I +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|239825658|ref|YP_002948282.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239805951|gb|ACS23016.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 73 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK TQ+ + G + S + E+E G + + +A L+ + Sbjct: 2 EAEKWGRRIRAFRKLKGYTQERLAKDLGVSVSILGEVERGNRLPSEQLIEKIAERLNISV 61 Query: 78 WKLLKP 83 +L P Sbjct: 62 EELAPP 67 >gi|124267559|ref|YP_001021563.1| XRE family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124260334|gb|ABM95328.1| transcriptional regulator, XRE family [Methylibium petroleiphilum PM1] Length = 107 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 R +RKE KLT +++ + G ++S++ ELE +S + + + LA L Sbjct: 5 LGEKLRELRKERKLTLEKLADAAGLSKSYLWELENRESQRPSAEKLTALADALGV 59 >gi|49480398|ref|YP_039247.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331954|gb|AAT62600.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 63 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RK L+Q E+ R A+ I+ +E K ++ I LA L T L L Sbjct: 2 NKVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|78224628|ref|YP_386375.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195883|gb|ABB33650.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 198 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + + R +R+E +LT +E+ +G ++ +S++E + T I ++ ++ L Sbjct: 7 KSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGL 66 Query: 74 DT 75 Sbjct: 67 KV 68 >gi|325261695|ref|ZP_08128433.1| HTH DNA-binding protein [Clostridium sp. D5] gi|324033149|gb|EGB94426.1| HTH DNA-binding protein [Clostridium sp. D5] Length = 71 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RKE ++TQ E+ + + I LE G+ ++ +A + + Sbjct: 3 NKIQQLRKERRITQSELADAVEVTRQTIISLENGRYNASLILAHKIAQYFGVNIEDIF 60 >gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp. infantis 157F] gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 161 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ + + Q +S E G + +ID + +++ + P+ + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|309805573|ref|ZP_07699617.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308165112|gb|EFO67351.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] Length = 144 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F N + +RK+ + Q E+ + G + S ISE E G T I + +A L Sbjct: 53 MFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDD 112 Query: 80 LL 81 L+ Sbjct: 113 LM 114 >gi|300119011|ref|ZP_07056722.1| transcriptional regulator, PBSX family protein [Bacillus cereus SJ1] gi|298723627|gb|EFI64358.1| transcriptional regulator, PBSX family protein [Bacillus cereus SJ1] Length = 83 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 14 QVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73 Query: 76 PLWKLL 81 + KL Sbjct: 74 TVDKLF 79 >gi|291436130|ref|ZP_06575520.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291339025|gb|EFE65981.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 273 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 R R++ +++Q E+ R + IS +ETG+S + + ++ LA Sbjct: 5 PSGTAPAAEGVGPLLRAWREQRRISQLELALRADSSARHISFIETGRSRPSEEMVLRLAE 64 Query: 72 TLDTPLWK 79 LD P+ + Sbjct: 65 HLDVPVRE 72 >gi|238790346|ref|ZP_04634118.1| DNA-binding phage-related protein [Yersinia frederiksenii ATCC 33641] gi|238721533|gb|EEQ13201.1| DNA-binding phage-related protein [Yersinia frederiksenii ATCC 33641] Length = 90 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + + R++ LTQ+E+ R G + IS +E G + N+ + A L Sbjct: 18 RQAMMTELKAARQQCHLTQEEVAQRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 73 >gi|228477738|ref|ZP_04062367.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250627|gb|EEK09838.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L Q E+ G ++ IS LE G+ T ++ I +A P+ + Sbjct: 5 NRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTPSVIIAITIAQVFKEPVENVF 62 >gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509] Length = 230 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + ++ G + IS LETGK + + +A +L + L Sbjct: 4 GNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIADLF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11] gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11] gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] Length = 230 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + ++ G + IS LETGK + + +A +L + L Sbjct: 4 GNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIADLF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|187940017|gb|ACD39152.1| hypothetical protein PACL_0364 [Pseudomonas aeruginosa] Length = 112 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M N R R+ L Q+++ G S E GK D + +A TL + Sbjct: 1 MAIGENIRKARERKGLRQEQVAEMAGIPLSTYKNYEHGKQPPPGDRIGAIARTLGVSADE 60 Query: 80 LL 81 L+ Sbjct: 61 LV 62 >gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK2000] gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK966] gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591] gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299] gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407] gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591] gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299] Length = 230 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81 N R +R+ + ++ G + IS LETGK + + +A +L + L Sbjct: 4 GNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIADLF 63 Query: 82 K 82 Sbjct: 64 T 64 >gi|182684924|ref|YP_001836671.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|303254087|ref|ZP_07340202.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|303260363|ref|ZP_07346333.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|303262511|ref|ZP_07348453.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|303265142|ref|ZP_07351055.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] gi|303265996|ref|ZP_07351891.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|303268072|ref|ZP_07353873.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|182630258|gb|ACB91206.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|301802667|emb|CBW35433.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598920|gb|EFL65951.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|302636411|gb|EFL66904.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|302638529|gb|EFL68994.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|302642432|gb|EFL72778.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|302644437|gb|EFL74689.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|302645359|gb|EFL75593.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] Length = 299 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|225164574|ref|ZP_03726822.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] gi|224800811|gb|EEG19159.1| putative transcriptional regulator, XRE family [Opitutaceae bacterium TAV2] Length = 120 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + R RK LTQ + + QS I+++E G+ +++ I +A + Sbjct: 39 ENDVLRQTLRQERKRLGLTQAAVAEACRWEQSVIAKIEQGERRVDVVEFIWMAEAMRLKP 98 Query: 78 WKLLK 82 +L + Sbjct: 99 ERLFR 103 >gi|150395536|ref|YP_001326003.1| hypothetical protein Smed_0309 [Sinorhizobium medicae WSM419] gi|150027051|gb|ABR59168.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 470 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E IF R IR +LTQ + G + S+++ +E + + + ++ LA Sbjct: 3 ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYRID 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] Length = 177 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R+ +Q ++ +G I + E G D + +A L Sbjct: 1 MVGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALG 54 >gi|323435994|ref|ZP_01049570.2| transcription regulator [Dokdonia donghaensis MED134] gi|321496309|gb|EAQ39542.2| transcription regulator [Dokdonia donghaensis MED134] Length = 274 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +R++ LTQ+E+ + + I +E G++ + + + LD L L Sbjct: 7 LGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIKTILSALDRDLDDL 65 >gi|317123049|ref|YP_004103052.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315593029|gb|ADU52325.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 193 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R IR+ L+ E+ RTG + IS+ E + ++D + LA + P Sbjct: 4 LGGRLRRIRESRNLSIYEVERRTGMHFTTISKYERNERQPSLDVLRELAALYEVP 58 >gi|301793782|emb|CBW36171.1| putative uncharacterized protein [Streptococcus pneumoniae INV104] gi|332204607|gb|EGJ18672.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 88 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETG+S++ +D ++ + +L L Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTL 78 >gi|256789178|ref|ZP_05527609.1| DNA-binding protein [Streptomyces lividans TK24] Length = 473 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F R++R+ A LTQ ++ R G+ S +S LE G + + L L+T Sbjct: 15 FGRQLRSLRRAAGLTQLQLGLRVGYHHSVVSRLEAGLREPPVGLVRRLDAVLET 68 >gi|302873667|ref|YP_003842300.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307686609|ref|ZP_07629055.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302576524|gb|ADL50536.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 116 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 30/58 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +RK+ +TQ+E+ N +G ++ I+++E + ++++ + +A + L Sbjct: 7 GEVISGLRKQKGMTQEELGNMSGLSRVIIAKIENNQRAVSLEEAVNIAKVFAIDVATL 64 >gi|302873656|ref|YP_003842289.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307686620|ref|ZP_07629066.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302576513|gb|ADL50525.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 140 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 M F + +R E L+Q+++ + + + + IS +E+G+ + + +A L Sbjct: 1 MSFGEFLKKLRAEKGLSQRQLADLSKISNTEISRMESGERQKPSPKILKEIAPHLGISYR 60 Query: 79 KLL 81 +L+ Sbjct: 61 ELM 63 >gi|296125837|ref|YP_003633089.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017653|gb|ADG70890.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 213 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 26/44 (59%) Query: 38 KEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 K++ + G + S +S++E G + +++ + +A L+ P+++ Sbjct: 51 KDLAKKCGISSSMLSQIEKGNANPSLNTIKSIAKELEVPIFQFF 94 >gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 161 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ + + Q +S E G + +ID + +++ + P+ + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMPR 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|163868981|ref|YP_001610211.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018658|emb|CAK02216.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ R L+QK + N G + I + E G + ++ ++ +A L P+ Sbjct: 21 GARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPI 75 >gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein PF1851 Length = 315 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R++ + E+ G ++ + E G+ ++ID I L D PL K Sbjct: 128 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPLVK 184 >gi|53724684|ref|YP_102063.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121600848|ref|YP_994013.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124384800|ref|YP_001028323.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126450213|ref|YP_001081967.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|167004339|ref|ZP_02270099.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20] gi|238562539|ref|ZP_00440248.2| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|254176797|ref|ZP_04883454.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254208723|ref|ZP_04915071.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU] gi|52428107|gb|AAU48700.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121229658|gb|ABM52176.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124292820|gb|ABN02089.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126243083|gb|ABO06176.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147750599|gb|EDK57668.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU] gi|160697838|gb|EDP87808.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238522411|gb|EEP85855.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243060323|gb|EES42509.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20] Length = 222 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 35 LVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 94 Query: 81 LK 82 L+ Sbjct: 95 LR 96 >gi|15901812|ref|NP_346416.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|111658875|ref|ZP_01409496.1| hypothetical protein SpneT_02000046 [Streptococcus pneumoniae TIGR4] gi|14973497|gb|AAK76056.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 299 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638] Length = 316 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R +R++ + E+ G ++ + E G+ ++ID I L D PL K Sbjct: 129 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPLVK 185 >gi|89893376|ref|YP_516863.1| hypothetical protein DSY0630 [Desulfitobacterium hafniense Y51] gi|219666666|ref|YP_002457101.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332824|dbj|BAE82419.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536926|gb|ACL18665.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 73 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R++ +TQ +I Q+ S+ E GK I + + +A T + L+ Sbjct: 3 ERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQVLGKIADLFGTSIDYLV 60 >gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 203 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K H D E I + IRK +T KE+ + + IS++E + + Sbjct: 4 KTALMHSEDLSAVEINI-GVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVR 62 Query: 65 NMIILAHTLDTPLWKLLK 82 + L L+ PL L+ Sbjct: 63 VLEQLRVVLNVPLTAFLE 80 >gi|317474810|ref|ZP_07934084.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909491|gb|EFV31171.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 98 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + R E +L QK+++ TG + +S LE G+ + + + LA +LL Sbjct: 4 FGDLIKEARIERELDQKDVQMETGIDYTLLSRLEKGERLPSKEQVYHLADFYSIKRRELL 63 >gi|313673033|ref|YP_004051144.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939789|gb|ADR18981.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 187 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 29/68 (42%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I + RN+RK +T +++ G +S++S LE K+ ++ + + + Sbjct: 2 IEVNKSYISKKIRNLRKSQGITLEQLAKAIGKTKSYVSMLENEKAIPSLSTLKEIVSFFN 61 Query: 75 TPLWKLLK 82 + + Sbjct: 62 MTIADFFE 69 >gi|308271732|emb|CBX28340.1| hypothetical protein N47_G36640 [uncultured Desulfobacterium sp.] Length = 98 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 4 RKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 RK+ P + F + R EA LTQ+E+ + +S IS +E I Sbjct: 18 RKKKSPSFGKNFDKGYEQFKIGVLLKQARLEAGLTQEEVASILNTRKSAISRIENHAEDI 77 Query: 62 NIDNMIILAHTLDTPL 77 + ++ A + L Sbjct: 78 RLSTLVNYAQAVGKNL 93 >gi|295106455|emb|CBL03998.1| Predicted transcriptional regulator with C-terminal CBS domains [Gordonibacter pamelaeae 7-10-1-b] Length = 104 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D+ +I N +RK+AK+T+++ + +++ +E G + + + Sbjct: 11 ASHAALDSRNEASVILGRNVTRLRKQAKITKQKFALMVDVGRPFLNRIENGTADPRLSVI 70 Query: 67 IILAHTLDTPLWKLLK 82 + LA L+T +LL Sbjct: 71 LRLAEALETTPQELLT 86 >gi|227553860|ref|ZP_03983907.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|227177015|gb|EEI57987.1| conserved hypothetical protein [Enterococcus faecalis HH22] Length = 108 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 30/59 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R + ++ R E ++Q ++ G ++ +++++E G T + M + + L+ Sbjct: 1 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLE 59 >gi|218460197|ref|ZP_03500288.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 215 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 ER IF R IR LTQ + + S+++ +E + + + ++ LA Sbjct: 3 ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62 Query: 77 LWKL 80 L +L Sbjct: 63 LEEL 66 >gi|170722460|ref|YP_001750148.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760463|gb|ACA73779.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 114 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ +LTQ ++ + +S LE G+ +++ ++ LA P +LL Sbjct: 12 GRQLAAYRRACRLTQAKVGEYLKISGEAVSRLERGEVELSVSKLLKLADLYGCPADELL 70 >gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+++ N G +++ +S+ E+G S +I + LA + + +LL Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISMDELL 65 >gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264] gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65 >gi|163740881|ref|ZP_02148274.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385872|gb|EDQ10248.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 462 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R LTQKE + G + +++++E ++ ++ LA + Sbjct: 4 QKLYAGAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDV 63 Query: 78 WKL 80 +L Sbjct: 64 TEL 66 >gi|144897602|emb|CAM74466.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 149 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%) Query: 4 RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 R R E D I R R L+Q E+ G + + E+G + I+ Sbjct: 12 RARTESGDPDPIDTH---VGARLRLRRTLMGLSQTELAKSVGLTFQQVQKYESGANRISA 68 Query: 64 DNMIILAHTLDTP 76 + ++ LD P Sbjct: 69 SRLYHISEALDVP 81 >gi|114569125|ref|YP_755805.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339587|gb|ABI64867.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 164 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +++R E +Q+++ +G + I E G+ T +++ + LA + D +L Sbjct: 3 LKSLRLEKGWSQEQLATISGLSDRTIQRAERGE-TPSLETVRALAASFDLSSAQL 56 >gi|72161135|ref|YP_288792.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71914867|gb|AAZ54769.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 418 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + F R +R EA + ++ +++S +S++ETG+ + + D LA DT L Sbjct: 4 ENVSFGAELRRLRTEAGWSLADLAEAVHYSKSHLSKVETGRKSPSAD----LARACDTAL 59 >gi|21244014|ref|NP_643596.1| hypothetical protein XAC3288 [Xanthomonas axonopodis pv. citri str. 306] gi|21109631|gb|AAM38132.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 112 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW-----ISELETGKSTINIDN 65 + ++ RN R TQ E+ R G S +S ETG+ + Sbjct: 1 MPKPKTPA-TVYGTRLRNARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPAT 59 Query: 66 MIILAHTLDTP 76 LA LD P Sbjct: 60 AEALAKALDLP 70 >gi|37527450|ref|NP_930794.1| hypothetical protein plu3581 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527459|ref|NP_930803.1| hypothetical protein plu3590 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786885|emb|CAE15954.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786894|emb|CAE15963.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 128 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + R+ K+TQ + + + E G S +D ++ +A L + L Sbjct: 15 QLFATRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSLDS 74 Query: 80 LL 81 L+ Sbjct: 75 LV 76 >gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family S24 [Magnetococcus sp. MC-1] gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Magnetococcus sp. MC-1] Length = 220 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78 R R+ A TQKE+ +R +Q+ I +LE G+S + + +A P+W Sbjct: 6 RIRTAREYAGFTQKELADRVDISQTAIHKLECGRSRSSRRT-VAIALACGVNPIW 59 >gi|330877739|gb|EGH11888.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965172|gb|EGH65432.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 >gi|319939025|ref|ZP_08013389.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] gi|319812075|gb|EFW08341.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 115 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R +R E +TQ+++ R +++ +LE + I+ + + L+ Sbjct: 13 RDYIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEV 69 >gi|302545070|ref|ZP_07297412.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302462688|gb|EFL25781.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 282 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 5 KRDEPHLSDAILRE----RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 + D +D E F + +R+E LTQ++ R ++ ++++++E G+ Sbjct: 79 RDDVRMGADNSEPEVSDNLKTFGAVLKALREEGGLTQEQFAPRVRYSVTYVAKMEQGRRF 138 Query: 61 INIDNMIILAHTLDTPLWKLL 81 + + + L P ++L Sbjct: 139 PPKELVPRVKDVLGAPAARVL 159 >gi|289671657|ref|ZP_06492547.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] gi|302187361|ref|ZP_07264034.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] gi|330941463|gb|EGH44274.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330954133|gb|EGH54393.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330970149|gb|EGH70215.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 >gi|289626698|ref|ZP_06459652.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646258|ref|ZP_06477601.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330866821|gb|EGH01530.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 >gi|260426951|ref|ZP_05780930.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421443|gb|EEX14694.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 463 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R ++ R++R LTQK+ + G + +++++E ++ ++ LA Sbjct: 1 MPTRKLYAGAKLRDLRGRLGLTQKDFAGKLGISLPYLNQMENNNRPVSTTVVLALAQEFG 60 Query: 75 TPLWKL 80 + +L Sbjct: 61 FDVTEL 66 >gi|255973367|ref|ZP_05423953.1| predicted protein [Enterococcus faecalis T2] gi|256962505|ref|ZP_05566676.1| predicted protein [Enterococcus faecalis HIP11704] gi|255966239|gb|EET96861.1| predicted protein [Enterococcus faecalis T2] gi|256953001|gb|EEU69633.1| predicted protein [Enterococcus faecalis HIP11704] Length = 78 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M+ N + R LTQK++ + G + IS +E K +++ LA+ LD + Sbjct: 7 MLQGNQLKKWRDRRNLTQKQLAMKIGCQRMTISRIEQEKQKPSLELAYSLANALDLKIED 66 Query: 80 LL 81 L Sbjct: 67 LF 68 >gi|255014195|ref|ZP_05286321.1| putative regulatory protein [Bacteroides sp. 2_1_7] gi|298374673|ref|ZP_06984631.1| regulatory protein [Bacteroides sp. 3_1_19] gi|298269041|gb|EFI10696.1| regulatory protein [Bacteroides sp. 3_1_19] Length = 82 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + + KE +T E+ ++ G + +S + G ++ + +A + P+ +L + Sbjct: 4 RIKEVIKEKGMTITELADKMGINRVNLSNMVNG--NPTVETLNKIADAIGCPVTELFE 59 >gi|225861807|ref|YP_002743316.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298230083|ref|ZP_06963764.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255252|ref|ZP_06978838.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503760|ref|YP_003725700.1| transcriptional regulator PlcR [Streptococcus pneumoniae TCH8431/19A] gi|225726713|gb|ACO22564.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298239355|gb|ADI70486.1| transcriptional regulator PlcR [Streptococcus pneumoniae TCH8431/19A] gi|327389153|gb|EGE87499.1| transcriptional activator [Streptococcus pneumoniae GA04375] Length = 299 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|211639114|emb|CAR67726.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639120|emb|CAR67732.1| Putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 128 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F + R+ K+TQ + + + E G S +D ++ +A L + L Sbjct: 15 QLFAKRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSLDA 74 Query: 80 LL 81 L+ Sbjct: 75 LV 76 >gi|229815042|ref|ZP_04445379.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] gi|229809272|gb|EEP45037.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] Length = 276 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI + RKE ++Q ++ + +++ +S E G +T +I +++++ L + Sbjct: 1 MILSEQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTTPDIQSLVLMGALFGLSLDE 60 Query: 80 LLK 82 ++K Sbjct: 61 MVK 63 >gi|251798721|ref|YP_003013452.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546347|gb|ACT03366.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 114 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79 F R IR++ E G + +++S LETGK TI +D + L L + + Sbjct: 4 FGQQLRQIRQQKGYGLNEFAKELGVSPAYLSNLETGKTQTIQLDILSKLQEQLHLSVNE 62 >gi|163737438|ref|ZP_02144855.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388964|gb|EDQ13316.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 462 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ R +R LTQKE + G + +++++E ++ ++ LA + Sbjct: 4 QKLYAGAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDV 63 Query: 78 WKL 80 +L Sbjct: 64 TEL 66 >gi|163747403|ref|ZP_02154756.1| transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] gi|161379381|gb|EDQ03797.1| transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] Length = 85 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +A L Q E+ + QS I+ LE+G+ +++ +++LA + +++L Sbjct: 15 QALVDARIKAGLGQDELATKLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPFEVL 72 >gi|154687569|ref|YP_001422730.1| Slr [Bacillus amyloliquefaciens FZB42] gi|308175181|ref|YP_003921886.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens DSM 7] gi|154353420|gb|ABS75499.1| Slr [Bacillus amyloliquefaciens FZB42] gi|307608045|emb|CBI44416.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens DSM 7] gi|328555152|gb|AEB25644.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens TA208] gi|328913510|gb|AEB65106.1| HTH-type transcriptional regulator slrR [Bacillus amyloliquefaciens LL3] Length = 151 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79 + R R+ + ++ G ++S++S++E G S +I + ++ TL L + Sbjct: 1 MIGRIIRLYRRRKGYSINQLAVEAGVSKSYLSKIERGVHSNPSIQFLKKVSATLQVDLTE 60 Query: 80 LL 81 L Sbjct: 61 LF 62 >gi|85707455|ref|ZP_01038535.1| hypothetical protein ROS217_02905 [Roseovarius sp. 217] gi|85668043|gb|EAQ22924.1| hypothetical protein ROS217_02905 [Roseovarius sp. 217] Length = 85 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +A L Q E+ + QS I+ LE+G+ +++ +++LA + +++L Sbjct: 15 QALVDARIKAGLGQDELATKLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPFEVL 72 >gi|312130932|ref|YP_003998272.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311907478|gb|ADQ17919.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 120 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 ++ R IR+ L+Q+ + + +QS S E+ K I + + +A L+ + Sbjct: 1 MYGAKIRMIREMRGLSQENVADELDISQSTYSLYESDKIKITGEMIEKIASVLNVSPLDI 60 Query: 81 L 81 + Sbjct: 61 M 61 >gi|310819937|ref|YP_003952295.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309393009|gb|ADO70468.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 115 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R++ LTQ ++ R G A + S +E G+ ++D M L L L+ Sbjct: 14 RLAREQMSLTQVQVAERVGLAPAVYSRIERGQMIPSVDTMRKLCVELMVSPEDLM 68 >gi|302390667|ref|YP_003826488.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302201295|gb|ADL08865.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 114 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + RK+ LTQ ++ G + +S ETG INI + LA+ Sbjct: 7 KSLGERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLYG 61 >gi|269127981|ref|YP_003301351.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312939|gb|ACY99313.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 279 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 R + P ++ L R F R +R++ + +E+ N+ + S++S LE G + + Sbjct: 10 GRPPN-PIDPNSSLAAR--FGWKIRTLREQRGWSLEELGNKVACSASYLSRLERGVKSPD 66 Query: 63 IDNMIILAHTLDT----PLWKLL 81 L L T W+L+ Sbjct: 67 EAVARQLDAALGTTYFSEHWQLV 89 >gi|242241229|ref|YP_002989410.1| hypothetical protein Dd703_3835 [Dickeya dadantii Ech703] gi|242133286|gb|ACS87588.1| protein of unknown function DUF955 [Dickeya dadantii Ech703] Length = 370 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +N R R +L+ +++ R + +I LE+G + D LA L Sbjct: 4 GSNLRLARLYHELSLEQVAERVDKTRQYIQRLESGSAVPTPDLANKLAAVLLV 56 >gi|257791632|ref|YP_003182238.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487901|ref|ZP_07946493.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA] gi|325830585|ref|ZP_08164006.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475529|gb|ACV55849.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316913027|gb|EFV34544.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA] gi|325487331|gb|EGC89773.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 68 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK + Q+++ G ++ IS LE G+ +I +A + + Sbjct: 3 NRLEEIRKARGIKQEDLALELGVSRQTISSLEKGRYNPSILLAFKIARRFGLQIEDVF 60 >gi|225155121|ref|ZP_03723616.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like protein [Opitutaceae bacterium TAV2] gi|224804068|gb|EEG22296.1| SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like protein [Opitutaceae bacterium TAV2] Length = 215 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 23/42 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 I + R+ A LTQ+E+ R G+ + WI +LE+ I+ Sbjct: 5 ISGKQLKEWRESAGLTQEELGQRLGYTREWIGKLESNDRPIS 46 >gi|224368109|ref|YP_002602272.1| HTH-type transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223690825|gb|ACN14108.1| HTH-type transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 211 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 33/60 (55%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N+R++ L+ KE+ N TGF + ++E GK + ++ L+ LD+ L +L+ Sbjct: 33 VGLRIKNLREKKGLSIKEVANLTGFDSQRLEDIENGKIQPQLGTVMKLSRALDSALGRLV 92 >gi|254168446|ref|ZP_04875290.1| CBS domain pair protein [Aciduliprofundum boonei T469] gi|197622501|gb|EDY35072.1| CBS domain pair protein [Aciduliprofundum boonei T469] Length = 184 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ + RK TQKE+ R+G +QS I+++E G + + + + LD Sbjct: 6 SSIKERRKRLGWTQKELAERSGVSQSAITKIEKGDMNPSYTLAVKIFNALD 56 >gi|167585519|ref|ZP_02377907.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 227 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|148927479|ref|ZP_01810979.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] gi|147887175|gb|EDK72643.1| transcriptional regulator, XRE family [candidate division TM7 genomosp. GTL1] Length = 528 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R TQ E+ G +QS I+ +E G ++++ + ++ L++ + Sbjct: 26 KQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVLNSEIV 85 Query: 79 KL 80 + Sbjct: 86 SI 87 >gi|329963231|ref|ZP_08300968.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328528927|gb|EGF55867.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 93 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/44 (18%), Positives = 24/44 (54%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E +TQ+ + + Q ++S++ G+ ++++ + + + LD Sbjct: 41 ELGMTQRALAEKMNCTQQYVSKVLKGRENLSLETLCKIENALDI 84 >gi|298290250|ref|YP_003692189.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296926761|gb|ADH87570.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 200 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 37/72 (51%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + D++ + I R RK+ +L+ + + +G ++S IS++E G++ + + L Sbjct: 7 EIEDSVADQLRILAAELRRHRKDRQLSLEALSLLSGVSRSMISKIERGETVPSTGTLSRL 66 Query: 70 AHTLDTPLWKLL 81 A L T +L+ Sbjct: 67 AEALGTTFSQLM 78 >gi|293400467|ref|ZP_06644612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305493|gb|EFE46737.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F N + IR+ LTQ + Q+ +S E G +++ MI ++ L L Sbjct: 10 FGNRIKEIRQSLGLTQVKFAKIINCTQATLSSYEKGSIIPSLETMIKISKECQISLDWL 68 >gi|271501754|ref|YP_003334780.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270345309|gb|ACZ78074.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 82 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + R R +TQ+ + QS+I+++E G+ +++ + LA L Sbjct: 8 EYQLVIKTLREARIAKGITQEMLAQALERPQSFIAKVENGERRLDVVEFVQLARLLALDP 67 Query: 78 WKLL 81 ++L Sbjct: 68 AQVL 71 >gi|257484178|ref|ZP_05638219.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486948|ref|ZP_07005001.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158510|gb|EFH99577.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324095|gb|EFW80177.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327822|gb|EFW83829.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|320328658|gb|EFW84658.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330885478|gb|EGH19627.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330891025|gb|EGH23686.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330985445|gb|EGH83548.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008257|gb|EGH88314.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 >gi|237797306|ref|ZP_04585767.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020156|gb|EGI00213.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 >gi|300777210|ref|ZP_07087068.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300502720|gb|EFK33860.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 260 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 IF N R +R + KL+Q+E+ ++ S+ E G+S + +I ++ + + L Sbjct: 3 IFSENIRYLRAQKKLSQQELAKEIFLSRVRYSKYEDGRSEAPYEVLIRISKYFNISIDLL 62 Query: 81 LK 82 L Sbjct: 63 LT 64 >gi|225857563|ref|YP_002739074.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|225725042|gb|ACO20894.1| transcriptional activator [Streptococcus pneumoniae P1031] Length = 299 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] Length = 255 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 27/54 (50%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + ++Q E+ + ++ +S E G++ N + + +L+ D + LL Sbjct: 9 ELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLL 62 >gi|199599682|ref|ZP_03213053.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258507137|ref|YP_003169888.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199589426|gb|EDY97561.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257147064|emb|CAR86037.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259648507|dbj|BAI40669.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 291 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + F + IR +TQ ++ + ++ +S E ++ +++ + +A Sbjct: 83 KPSEVIILNFSKQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARI 142 Query: 73 LDTPLWKLL 81 L L+ Sbjct: 143 FSVSLDTLI 151 >gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 120 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+E KL+QKEI ++ +S E G+S I + + LA + LL Sbjct: 2 NRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKVKQLADYFGVSVGYLL 59 >gi|109522125|ref|YP_655802.1| gp41 [Mycobacterium phage PMC] gi|91980825|gb|ABE67542.1| gp41 [Mycobacterium phage PMC] Length = 70 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ + E+ +G + ++S+LE G N LA L P+ L +P Sbjct: 3 QELRVIRERTGWSSAELSRESGISAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 62 >gi|28870080|ref|NP_792699.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213966893|ref|ZP_03395043.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381575|ref|ZP_07229993.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061669|ref|ZP_07253210.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302134354|ref|ZP_07260344.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853326|gb|AAO56394.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213928215|gb|EEB61760.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331015365|gb|EGH95421.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + +I ++ L + L Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 >gi|42520148|ref|NP_966063.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409885|gb|AAS13997.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 308 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N R E TQK++ + G I + E G I+I + +A L + L+ Sbjct: 13 VGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRGISIKRLYAIAEALSVSITNLI 72 Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R + TQK++ + + +S E G++ + +D + +A L + LL Sbjct: 167 GKKIKEWRLVREYTQKDLGEKMSTTRHEVSNYEQGRTAVPLDKLYEMAEALSINITDLL 225 >gi|73662636|ref|YP_301417.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495151|dbj|BAE18472.1| predicted transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + RK+ + + + T +++ + ++E +S +I + +A+ L +L Sbjct: 7 IIAENLKLYRKQNGYSLEHLSYLTEVSKTMLGQIERKESIPSITTLWKIANGLKVSFTEL 66 Query: 81 LK 82 + Sbjct: 67 TQ 68 >gi|85708082|ref|ZP_01039148.1| hypothetical protein NAP1_02565 [Erythrobacter sp. NAP1] gi|85689616|gb|EAQ29619.1| hypothetical protein NAP1_02565 [Erythrobacter sp. NAP1] Length = 193 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R IRK LT ++ I LETG ++I M + L+ L+ Sbjct: 3 NRIREIRKAKGLTLADLAEACEPPTTAQTIGRLETGMRNLSIKWMDRIGAALEVDPEVLV 62 Query: 82 K 82 + Sbjct: 63 R 63 >gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 34/64 (53%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +++ RKE +TQ+++ + G +++ +S+ E+G S +I + LA + + Sbjct: 2 KKLNIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNISV 61 Query: 78 WKLL 81 +LL Sbjct: 62 DELL 65 >gi|119386544|ref|YP_917599.1| helix-turn-helix domain-containing protein [Paracoccus denitrificans PD1222] gi|119377139|gb|ABL71903.1| helix-turn-helix domain protein [Paracoccus denitrificans PD1222] Length = 81 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R +A LTQ E+ R QS++++ E G+ I + +I +A + +++ Sbjct: 17 LKQARLDAGLTQTELAERLKRPQSFVAKYENGERRIEVVELIEIADAIGADPHDIIQ 73 >gi|254203747|ref|ZP_04910107.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH] gi|254360225|ref|ZP_04976495.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280] gi|147745259|gb|EDK52339.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH] gi|148029465|gb|EDK87370.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280] Length = 218 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 31 LVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 90 Query: 81 LK 82 L+ Sbjct: 91 LR 92 >gi|47567072|ref|ZP_00237789.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206970262|ref|ZP_03231215.1| DNA-binding protein [Bacillus cereus AH1134] gi|206978226|ref|ZP_03239106.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217962506|ref|YP_002341078.1| DNA-binding protein [Bacillus cereus AH187] gi|218234825|ref|YP_002369834.1| DNA-binding protein [Bacillus cereus B4264] gi|222098481|ref|YP_002532539.1| DNA-binding protein [Bacillus cereus Q1] gi|296505465|ref|YP_003667165.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|47556390|gb|EAL14724.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206734839|gb|EDZ52008.1| DNA-binding protein [Bacillus cereus AH1134] gi|206743585|gb|EDZ55012.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065545|gb|ACJ79795.1| DNA-binding protein [Bacillus cereus AH187] gi|218162782|gb|ACK62774.1| DNA-binding protein [Bacillus cereus B4264] gi|221242540|gb|ACM15250.1| DNA-binding protein [Bacillus cereus Q1] gi|296326517|gb|ADH09445.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 73 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +L+Q ++ G ++ IS +E G +I + +A + P+ ++ Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63 >gi|16804367|ref|NP_465852.1| hypothetical protein lmo2328 [Listeria monocytogenes EGD-e] gi|47096027|ref|ZP_00233629.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|254938319|ref|ZP_05270016.1| transcriptional regulator [Listeria monocytogenes F6900] gi|16411817|emb|CAD00406.1| lmo2328 [Listeria monocytogenes EGD-e] gi|47015624|gb|EAL06555.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258610931|gb|EEW23539.1| transcriptional regulator [Listeria monocytogenes F6900] Length = 80 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + IR+E LTQ+++ ++ + +E G+ ++ N + +A LD Sbjct: 5 LKKIREENGLTQQDVAELADVERTTYASIEQGRRNPSVVNAMRIASVLD 53 >gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] Length = 63 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN RKE L+Q E+ + G ++ ++ +E K + LA L T + +L Sbjct: 5 IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDPTLTLAFNLAKELKTTVDELF 60 >gi|294615154|ref|ZP_06695038.1| transcription regulator [Enterococcus faecium E1636] gi|312905108|ref|ZP_07764229.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|291591974|gb|EFF23599.1| transcription regulator [Enterococcus faecium E1636] gi|310631498|gb|EFQ14781.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579064|gb|EFU91255.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 71 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKE L+Q E+ + Q +S +TG++ M +L+ L P+ +L Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 62 >gi|285018770|ref|YP_003376481.1| transcriptional regulator transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283473988|emb|CBA16489.1| putative transcriptional regulator transcription regulator protein [Xanthomonas albilineans] Length = 115 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R RK A LTQ+++ G +S IS E + T + + +L L L Sbjct: 2 KSFGDRLREARKAAGLTQEQLGFSLGVTKSSISAWENDRETPSFRLLPMLRVVLKRSLDD 61 Query: 80 LL 81 L+ Sbjct: 62 LV 63 >gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + KL+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDKLI 65 >gi|227357896|ref|ZP_03842243.1| hypothetical protein HMPREF0693_3134 [Proteus mirabilis ATCC 29906] gi|227161901|gb|EEI46923.1| hypothetical protein HMPREF0693_3134 [Proteus mirabilis ATCC 29906] Length = 102 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE ++ + + +Q IS E GK+ + + + + L+ + L Sbjct: 13 GAYIRKTRKEMGMSALVLGEKLNMSQQQISRCENGKTNLTFEFINKVLVALNKQWYHLF 71 >gi|210631905|ref|ZP_03297117.1| hypothetical protein COLSTE_01007 [Collinsella stercoris DSM 13279] gi|210159830|gb|EEA90801.1| hypothetical protein COLSTE_01007 [Collinsella stercoris DSM 13279] Length = 212 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMIILAHTLDTP 76 + + R A L+Q ++ +G I + E G+ + + + ++ LA + P Sbjct: 148 ASRLKKYRTSAGLSQSQLAALSGVPVRSIQQYEQGQKRVNRASFETVLRLAQAVGAP 204 >gi|297196740|ref|ZP_06914138.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720104|gb|EDY64012.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 104 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E T E+ +R+G A+ + +LE G++T ++ LAHT D P+ + L Sbjct: 34 LARLRAERGWTFDELADRSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIERFL 89 >gi|148989990|ref|ZP_01821265.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|194397378|ref|YP_002038572.1| transcriptional regulator PlcR [Streptococcus pneumoniae G54] gi|147924650|gb|EDK75736.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|194357045|gb|ACF55493.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae G54] Length = 299 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M+ + IR E +++ + + +S +E+G S ++ + +A L P++ Sbjct: 1 MLIGQKIKEIRIEKGVSRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 79 KLL 81 L+ Sbjct: 61 SLM 63 >gi|115375886|ref|ZP_01463135.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1] gi|310819833|ref|YP_003952191.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|115367064|gb|EAU66050.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1] gi|309392905|gb|ADO70364.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 124 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 ++ R I + R R A LTQ ++ + + S LE G+ ++ + L Sbjct: 15 ESSRPLRSIIGDALRAARLRANLTQVDVAHLIDISPVVYSRLERGRGLPSVQTLFCLCTA 74 Query: 73 LDTPLWKLL 81 L +LL Sbjct: 75 LRATPNELL 83 >gi|110804036|ref|YP_699966.1| Helix-turn-helix domain protein [Clostridium phage phiSM101] gi|110684537|gb|ABG87904.1| Helix-turn-helix domain protein [Clostridium phage phiSM101] Length = 120 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 22/52 (42%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + +RK LTQ E ++ ++S +ETG+ + + + Sbjct: 3 NRVKELRKSLGLTQNEFADKINMSRSNFGSIETGRVNLTDRVINDICKAFSV 54 >gi|78067487|ref|YP_370256.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968232|gb|ABB09612.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 233 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92 Query: 80 LLK 82 L+ Sbjct: 93 FLR 95 >gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16] Length = 285 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + R L+Q+++ + G ++ +S+ E G + + D ++ LA L+ + Sbjct: 3 MTIGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISVDT 62 Query: 80 LL 81 LL Sbjct: 63 LL 64 >gi|332670075|ref|YP_004453083.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339113|gb|AEE45696.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 113 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R+ T +E+ + + ++SE+E G+ + + + + LD P+ Sbjct: 5 RREIGDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLNSICEALDVPMS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 LVLR 68 >gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17] gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010] gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum S17] gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 161 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ + + Q +S E G + +ID + +++ + P+ + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 316 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 26/54 (48%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+E LTQKE+ + +S+ E G + ++ + L+ L + +LL Sbjct: 20 QARREKGLTQKELAQALHVSPQAVSKWERGLNFPDLALLEALSDQLGLTVSELL 73 >gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1] gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1] Length = 373 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|271967597|ref|YP_003341793.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510772|gb|ACZ89050.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 407 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII-LAHTL 73 + R RK A +TQ+E+ R G AQSW+S +E ++ ++ LA L Sbjct: 4 SDPAGESAGTHVRRARKRAGITQRELAQRVGRAQSWVSGVENDSIPLDSIALVNGLARVL 63 Query: 74 DTPLWKL 80 +L Sbjct: 64 RIHPNEL 70 >gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 469 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ R +R E L+Q + G + S+++++E + + + ++ + L Sbjct: 2 KKTFMGVKLRKLRAERGLSQIALAQALGLSPSYLNQIEQNQRPLTVSVLLKIHRVLGV 59 >gi|253987700|ref|YP_003039056.1| bacteriophage n15 gp48 protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779150|emb|CAQ82310.1| similar to gp48 proteins of bacteriophage n15 [Photorhabdus asymbiotica] Length = 92 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 7 DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66 D DA+ E + N +R A LTQ ++ R G ++ IS LE G + + Sbjct: 16 DVKAEYDALEPEFELI-NTLLRMRHAAGLTQNQVAQRMGTKEANISRLEKGNGNPTLKTL 74 Query: 67 IILAHTLDTPL 77 + A + L Sbjct: 75 LNYAKACNCKL 85 >gi|238854983|ref|ZP_04645312.1| transcriptional regulator, xre family [Lactobacillus jensenii 269-3] gi|238832354|gb|EEQ24662.1| transcriptional regulator, xre family [Lactobacillus jensenii 269-3] Length = 107 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 34 KLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKLL 81 KLTQ+++ +G + ++IS +E G I+I + +A +L+ L+ Sbjct: 2 KLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTPSLI 50 >gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 373 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|217960732|ref|YP_002339296.1| DNA-binding protein [Bacillus cereus AH187] gi|229139935|ref|ZP_04268500.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] gi|217067257|gb|ACJ81507.1| DNA-binding protein [Bacillus cereus AH187] gi|228643600|gb|EEK99866.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|70729712|ref|YP_259451.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344011|gb|AAY91617.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ KL+Q+E+ R+G + IS +E + + ++ ++ L + L Sbjct: 4 GTRLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSVSSLKKLLEGIPMSLADFFT 63 >gi|71065545|ref|YP_264272.1| DNA binding protein [Psychrobacter arcticus 273-4] gi|71038530|gb|AAZ18838.1| possible DNA binding protein , Helix turn helix motif [Psychrobacter arcticus 273-4] Length = 115 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI------NIDNMIILAHTLDT 75 F R +R + ++ K + + G + ++S +ETG+ + +I N + L+ T Sbjct: 7 FGKKLRKLRIDHEVMLKTMADSIGVSSPYLSAIETGRKPVNAHLLNSIINSLQLSEQEGT 66 Query: 76 PLWKL 80 L KL Sbjct: 67 ELTKL 71 >gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 374 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|19746767|ref|NP_607903.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes MGAS8232] gi|139473168|ref|YP_001127883.1| DNA-binding membrane protein [Streptococcus pyogenes str. Manfredo] gi|19748999|gb|AAL98402.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes MGAS8232] gi|134271414|emb|CAM29634.1| putative DNA-binding membrane protein [Streptococcus pyogenes str. Manfredo] Length = 195 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|21911121|ref|NP_665389.1| hypothetical protein SpyM3_1585 [Streptococcus pyogenes MGAS315] gi|28895194|ref|NP_801544.1| hypothetical protein SPs0282 [Streptococcus pyogenes SSI-1] gi|21905331|gb|AAM80192.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810439|dbj|BAC63377.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 195 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|322516931|ref|ZP_08069826.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124508|gb|EFX95995.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 108 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 23/52 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R + +TQ+ + + +++ ++E + I I + + LD Sbjct: 10 KRIRVLRIKEGMTQEMLEEKAELGTNYVYKIENLEPNIKIKTLEKIMKALDV 61 >gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 148 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E F + +RK KLTQ +I G Q S E G ++ ++ LA+ T Sbjct: 3 TEDYKFSERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLEPGLEFVVKLANIFGTT 62 Query: 77 LWKLL 81 LL Sbjct: 63 TDYLL 67 >gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 195 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R +R E +TQK++ ++ + +S+ E G +I + L+ L+ + LL Sbjct: 6 VGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGMGLPDISLIPELSRILEIDIMHLL 65 >gi|237733582|ref|ZP_04564063.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383415|gb|EEO33506.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 407 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 28/55 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +V + + R+ ++Q+++ G + ++S++ETGK+ + + L+ Sbjct: 18 ETWVRDIKEKREVYGISQQKLALAAGITRPYLSDIETGKAHPSEALQETITEALE 72 >gi|228956760|ref|ZP_04118546.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802948|gb|EEM49780.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 117 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M R R+++ TQ I + + +S E+G+ + D + LA + Sbjct: 1 MTLGERLRTCREKSGYTQTYITEKLEIHRGTLSSYESGRRKPDYDTLSKLADIYKVSVDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|149189972|ref|ZP_01868250.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] gi|148836138|gb|EDL53097.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1] Length = 155 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R + +Q+++ +G + I +E G+ ++++ LA +T + +L Sbjct: 3 IRKLRLQRGWSQEQLAELSGLSIRTIQRIERGQK-PGLESLKSLAAVFETTITEL 56 >gi|134101749|ref|YP_001107410.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914372|emb|CAM04485.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 276 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + + +R A LT ++ +R G+ Q +S++E+ K + ID +I LA Sbjct: 7 RRVLASELKRLRLSAGLTHVDVAHRLGWQQGKVSKIESAKQGVGIDAVIALAEVCGATPQ 66 Query: 79 K 79 + Sbjct: 67 Q 67 >gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] Length = 215 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +++R++ +TQ+E+ + G A+ + E + + + LA + L Sbjct: 1 MLGERLKSLREQKGITQQEMADILGIARGTYAHYEIDRREPDNATLSRLADFFGVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|152997330|ref|YP_001342165.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150838254|gb|ABR72230.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 132 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +R + K+TQ++I A S +S +E G + + LA L+T L Sbjct: 7 IKILRIQRKMTQEQIALEADMATSNVSRIEKGLRQPSQKVLQKLAKALNTKPSVL 61 >gi|145593947|ref|YP_001158244.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303284|gb|ABP53866.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 150 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R+ T +E+ + + ++SE+E G+ + + + + L L Sbjct: 5 RRLIGDALRTRRQGQHRTLREVSSAANVSLGYLSEIERGQKEPSSELLAAICDALGARLS 64 Query: 79 KLLK 82 +LL+ Sbjct: 65 ELLR 68 >gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 111 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M +RK A LTQ ++ +Q + E G+ I I + +A L L + Sbjct: 2 MTLGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRRRIQISVLPEIAKLLSVSLEE 61 Query: 80 LL 81 L Sbjct: 62 LF 63 >gi|94313682|ref|YP_586891.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357534|gb|ABF11622.1| putative transcriptional regulator [Cupriavidus metallidurans CH34] Length = 296 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 27/54 (50%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R + +Q + G +Q IS LE+G++ + + ++ LA L PL + Sbjct: 18 LRYWRGKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQ 71 >gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308376634|ref|ZP_07439483.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308378845|ref|ZP_07484047.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308331404|gb|EFP20255.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308342691|gb|EFP31542.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308346576|gb|EFP35427.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308350499|gb|EFP39350.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308359101|gb|EFP47952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] Length = 478 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R R +R+E LTQ + + S++++LE + I + +++L D Sbjct: 7 RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLS 64 >gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 228 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RKE KLTQKEI + G + S E G + + + L + L P Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVP 57 >gi|291615469|ref|YP_003522577.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] gi|291582531|gb|ADE16987.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 74 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 N + +R A LTQ ++ QS +S++E ++ + + + +A LD + L Sbjct: 3 VGENIKMLRIAAGLTQVQLAKEARIDQSGLSKIEREENENVTLPTLRRIARALDCSVVDL 62 Query: 81 LK 82 L+ Sbjct: 63 LE 64 >gi|260461769|ref|ZP_05810015.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259032410|gb|EEW33675.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 138 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F R R + +LT +E+ R G ++S + +E G + I M A + L+ Sbjct: 45 LFGKTIRLGRMQHRLTGQELAERIGVSRSTLQRIEKGDPKVEIGLMFEAAAIVGVKLFD 103 >gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 475 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 6/53 (11%), Positives = 23/53 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R++R+ ++Q E+ + S+++++E + + ++ + Sbjct: 7 GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGV 59 >gi|256393169|ref|YP_003114733.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359395|gb|ACU72892.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 483 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAH 71 + + + R L+Q E+ + QS++S LE GK + +I + A Sbjct: 17 RTAPPDSSDLGDVLKAYRTRHDLSQAELGDLLNCDQSYLSMLERGKRFVRDIGELRRFAA 76 Query: 72 TLDTPLWKL 80 L P +L Sbjct: 77 VLGLPEAEL 85 >gi|289579258|ref|YP_003477885.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528971|gb|ADD03323.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 117 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R++ TQ E+ TG + +S E G+ I+I + LA Sbjct: 5 KAIGEKLKEVREKNGYTQAEVEKATGIKREMLSYYENGRREIDIATLEKLASFYG 59 >gi|254197120|ref|ZP_04903543.1| irep [Burkholderia pseudomallei S13] gi|169653862|gb|EDS86555.1| irep [Burkholderia pseudomallei S13] Length = 106 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 IF + RK A L+Q+++ G A + +++ E GK + + +A L P Sbjct: 3 IFAVRLKQARKAAGLSQEKLGVLAGVDEMSASARMNQYERGKHEPDFAMVNRIAQALQLP 62 Query: 77 L 77 + Sbjct: 63 I 63 >gi|164687004|ref|ZP_02211032.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] gi|164603889|gb|EDQ97354.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] Length = 71 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R + K+ Q E+ N G ++ IS++E G + ++ + +A L+ + ++ Sbjct: 5 NRLKEYRAKIKVNQTEMGNLVGVSRQTISQIERGDYSPSVTLALKIAKVLNVSVEEIF 62 >gi|160931653|ref|ZP_02079047.1| hypothetical protein CLOLEP_00484 [Clostridium leptum DSM 753] gi|156869298|gb|EDO62670.1| hypothetical protein CLOLEP_00484 [Clostridium leptum DSM 753] Length = 90 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 KE +L+Q+ G A+S ++ +E G N + + +A+ L +L++ Sbjct: 18 KEKQLSQEIASGLAGLARSHLAMIENGSKQANFETVWKIANALGMCPHELVR 69 >gi|77462199|ref|YP_351703.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] gi|77386617|gb|ABA77802.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] Length = 120 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +R+ TQ+ + R+G ++S ++ +E N + +A L L + Sbjct: 25 ALRIKQLREARGWTQEVLAARSGMSRSQLAMIERETRPANTIRLNAIAGALGVSTEDLFE 84 >gi|77163558|ref|YP_342084.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254436424|ref|ZP_05049929.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27] gi|76881872|gb|ABA56554.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207087958|gb|EDZ65232.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27] Length = 76 Score = 45.0 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80 N + +R A LTQ ++ QS +S++E ++ ++ + + +A LD + L Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKEARIDQSGLSKIEREENESVTLPTLRKIAKALDCSVAAL 62 Query: 81 LK 82 L+ Sbjct: 63 LE 64 >gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 94 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + IR++ +Q +I G + IS E K+ ++ ++I LA L +L Sbjct: 1 MLGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|315607572|ref|ZP_07882567.1| XRE family transcriptional regulator [Prevotella buccae ATCC 33574] gi|315250755|gb|EFU30749.1| XRE family transcriptional regulator [Prevotella buccae ATCC 33574] Length = 119 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E + E++ + K +TQK++ G + S IS+ GKS + Sbjct: 44 EEYEKKHHPIEKLTLAEVIKQGLKAKGMTQKDLSQAVGLSTSRISDFTQGKSEPTLATAG 103 Query: 68 ILAHTLDTPLWKLL 81 + LD +L Sbjct: 104 EICRVLDIMPEAML 117 >gi|313837173|gb|EFS74887.1| helix-turn-helix protein [Propionibacterium acnes HL037PA2] gi|314927806|gb|EFS91637.1| helix-turn-helix protein [Propionibacterium acnes HL044PA1] gi|314971945|gb|EFT16043.1| helix-turn-helix protein [Propionibacterium acnes HL037PA3] gi|328907270|gb|EGG27036.1| transcriptional regulator [Propionibacterium sp. P08] Length = 91 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + ++ + LD P Sbjct: 7 REVLGESLREQRFGQGRTLREVSSAARVSLGYLSEVERGQKEASSELILAICTALDLPQS 66 Query: 79 KLLK 82 +L++ Sbjct: 67 ELMR 70 >gi|308176134|ref|YP_003915540.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743597|emb|CBT74569.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 487 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK +LT ++ A S +S +E GK + + LA L + LL Sbjct: 20 LGRRIRFLRKSKQLTLDDVSTLVDTAPSQLSLIENGKREPKLSLLKSLAGALGVGVDDLL 79 >gi|269124932|ref|YP_003298302.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309890|gb|ACY96264.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 383 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKLL 81 N R ++Q + G ++SW+S++E G ++ + ++ LA L+ + L+ Sbjct: 9 GENIVRRRMRLGMSQSVLAGLIGRSESWVSQVERGVHKVDRLSVLVTLARALNVEVADLV 68 >gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM 44928] gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM 44928] Length = 283 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +Q E+ R + IS E+G+ ++ +D++I LA L + + Sbjct: 8 VGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESGRRSVGLDDLIELARVLGLGISE 67 Query: 80 LL 81 LL Sbjct: 68 LL 69 >gi|220928578|ref|YP_002505487.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998906|gb|ACL75507.1| plasmid maintenance system antidote protein, XRE family [Clostridium cellulolyticum H10] Length = 230 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +R + +T K++ G ++ ++ ++E+GK ++ D + ++ LD L Sbjct: 5 GQEINKLRLKKGMTPKQLARALGVSEKFVLDIESGKKIVSDDMIGRVSKALDFEL 59 >gi|257060127|ref|YP_003138015.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256590293|gb|ACV01180.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 534 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R+ ++Q+ + + G +QSWI +LE G+ + ++ IL L Sbjct: 477 ELTSDQILAARQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKPEDRAILQTVLG 531 >gi|254426264|ref|ZP_05039980.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] gi|196187678|gb|EDX82644.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] Length = 462 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R L + + +RK +Q+++ TG +Q IS +E G ++ N Sbjct: 392 RAADKSDSVQLSITRLTGTEIKTMRKAKGWSQRKLARITGISQGLISMMENGDRSVTDAN 451 Query: 66 MIILAHTLD 74 +L TL+ Sbjct: 452 EALLKQTLE 460 >gi|218247058|ref|YP_002372429.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218167536|gb|ACK66273.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 534 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R+ ++Q+ + + G +QSWI +LE G+ + ++ IL L Sbjct: 477 ELTSDQILAARQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKPEDRAILQTVLG 531 >gi|189423245|ref|YP_001950422.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419504|gb|ACD93902.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 86 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R RK+ +T ++ + +++S LE GK T+ +D ++ +A L Sbjct: 10 GRLIRQKRKDDGITLEDAAALCSVSYAFLSALENGKETVRLDKVLQVALCLGIE 63 >gi|86739017|ref|YP_479417.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86565879|gb|ABD09688.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 167 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKLL 81 + IR+ L+Q+E+ R+G + + I +LE + I+ + LA L+ +L Sbjct: 91 GDRIAQIRRRRSLSQEELAARSGVSVAVIRKLEQNRRAGARIETLHALARGLNVKTSELF 150 >gi|70725248|ref|YP_252162.1| hypothetical protein SH0247 [Staphylococcus haemolyticus JCSC1435] gi|68445972|dbj|BAE03556.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 112 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE LTQ ++ + +S+ E G N+ ++ LA D +LL Sbjct: 3 LAEQIRKHRKENNLTQDQLATELHTTRQTVSKWEQGTIEPNVQMIVQLAQRFDISTDELL 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|25011369|ref|NP_735764.1| hypothetical protein gbs1327 [Streptococcus agalactiae NEM316] gi|24412907|emb|CAD46986.1| Unknown [Streptococcus agalactiae NEM316] Length = 73 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ TQ+ + F+ + +++E G+ + D +I L+ + +L Sbjct: 3 QRIRDLREDHDFTQRYVAEVLSFSHTNYAKIERGEVVLTADVLIKLSKLYNVSTDYIL 60 >gi|303326179|ref|ZP_07356622.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302864095|gb|EFL87026.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 189 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R+ R+E ++ + + T + ++++LE G+ +I M LA L Sbjct: 1 MPTKHNIGSRIRSFREEREIDLETLSQDTNLSVEFLNQLENGEIYPSIGPMQKLARALGV 60 Query: 76 PL 77 L Sbjct: 61 RL 62 >gi|300933807|ref|ZP_07149063.1| hypothetical protein CresD4_07014 [Corynebacterium resistens DSM 45100] Length = 73 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R R++A LTQ ++ G ++ I+ +E G + ++ + + L+ + ++ Sbjct: 5 NSLRTARRDAPLTQLQLAEAVGVSRQTIANIERGDYSPSVHLALNICRCLNKTVEEVF 62 >gi|297156282|gb|ADI05994.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 288 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 P +R R + N R +R+E L + + S IS +E+G+S + ++ Sbjct: 2 PVDPKPTVR-RRVLGTNLRRLREEHGLLLEHAAEQLSCYPSKISRIESGQSPVRPLDLKA 60 Query: 69 LAHTLDT 75 L Sbjct: 61 LLDLYGV 67 >gi|282860747|ref|ZP_06269813.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282564483|gb|EFB70019.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 278 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 + R++R+ TQ ++ R G++ IS +ETG+ + Sbjct: 16 YGARLRSLREARGWTQDDLAARIGYSSVHISAVETGRKPPTL 57 >gi|323527291|ref|YP_004229444.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323384293|gb|ADX56384.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 228 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 29 HLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAA 88 Query: 80 LLK 82 L+ Sbjct: 89 FLR 91 >gi|261821438|ref|YP_003259544.1| phage repressor [Pectobacterium wasabiae WPP163] gi|261605451|gb|ACX87937.1| putative phage repressor [Pectobacterium wasabiae WPP163] Length = 244 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77 + + +R L+QK + + G +Q+ I ++E GK++ ++ L++ L P Sbjct: 2 KTTLAERLKTVRTSQGLSQKALGDMVGVSQAAIQKIEGGKASQTT-KIVELSNALHIRPE 60 Query: 78 W 78 W Sbjct: 61 W 61 >gi|228920080|ref|ZP_04083429.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839536|gb|EEM84828.1| Helix-turn-helix repressor protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 69 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ L+Q+++ + G ++ I +E GK ++ +A T T + + Sbjct: 3 NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|227484868|ref|ZP_03915184.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227237228|gb|EEI87243.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 145 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 L R N + +R KL+ + G ++S IS++E G++ ++ + MI L Sbjct: 24 LIRRYKMSNRLKQLRTTLKLSGAKFAEPLGVSRSAISDIERGRNNLS-EQMIKL 76 >gi|213970979|ref|ZP_03399100.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301382278|ref|ZP_07230696.1| hypothetical protein PsyrptM_06578 [Pseudomonas syringae pv. tomato Max13] gi|302059768|ref|ZP_07251309.1| hypothetical protein PsyrptK_07240 [Pseudomonas syringae pv. tomato K40] gi|213924215|gb|EEB57789.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 151 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + +R L+Q +++++ Q+ IS LE +T ID LAH L Sbjct: 4 RKAYAATLQWLRIRNGLSQADLQHQAD--QAHISRLEAATTTPTIDLSADLAHALGLTPL 61 Query: 79 KLLK 82 LL Sbjct: 62 SLLT 65 >gi|194397893|ref|YP_002038537.1| transcriptional activator [Streptococcus pneumoniae G54] gi|194357560|gb|ACF56008.1| transcriptional activator, putative [Streptococcus pneumoniae G54] Length = 287 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|254380659|ref|ZP_04996025.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194339570|gb|EDX20536.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 296 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 S + R R+E LT++++ R G ++++ LE + I ++ +A Sbjct: 12 STEVPAGRTDLGRRIAARRQELGLTREQVGKRCGADATYVAYLEEHAAAPAIGSLARIAD 71 Query: 72 TLDTPLWKL 80 L T + +L Sbjct: 72 ALGTTVAEL 80 >gi|156973431|ref|YP_001444338.1| hypothetical protein VIBHAR_01120 [Vibrio harveyi ATCC BAA-1116] gi|156525025|gb|ABU70111.1| hypothetical protein VIBHAR_01120 [Vibrio harveyi ATCC BAA-1116] Length = 84 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R + R +LTQ ++ T ++ ISE+E G+ T + D L + Sbjct: 4 RSEIGLKVKQARNHMRLTQVQLSRLTKINKTTISEIENGRFTGSFDIFERLLDAVG 59 >gi|145593610|ref|YP_001157907.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145302947|gb|ABP53529.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 135 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + R R+ A + + T F++ ++S +ETG+ D + H L P+ Sbjct: 19 LGAHLRAAREAAGHSLAGMAALTHFSKPYLSLVETGRRQATPDIVGRYEHALGVPI 74 >gi|330468378|ref|YP_004406121.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811349|gb|AEB45521.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 441 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R +++Q+E+ S+IS LE G +D ++ L LD L +LL Sbjct: 21 FGQRLKARRTALRMSQRELAGDF-VTPSYISLLEAGSRVPTLDVVVYLGRMLDCSLEELL 79 >gi|317484462|ref|ZP_07943374.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924286|gb|EFV45460.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 78 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + RK L+Q + ++G + I LE G + + +AH LD + L+ Sbjct: 7 FGDMLKEKRKLRGLSQMGLAMKSGRSLRCIQYLEAGTQEPTLSTLYAIAHALDLRVMDLI 66 Query: 82 K 82 + Sbjct: 67 E 67 >gi|313207294|ref|YP_004046471.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446610|gb|ADQ82965.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023411|gb|EFT36420.1| XRE family transcriptional regulator [Riemerella anatipestifer RA-YM] gi|325335232|gb|ADZ11506.1| transcriptional regulator, XRE family [Riemerella anatipestifer RA-GD] Length = 108 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R+E LTQ+++ G +S IS+LE+ ++ ID +I + L + Sbjct: 38 VLGKMIKTARQERNLTQEQLGQIVGVQKSQISKLESSANSATIDTIIKVFKALKAEI 94 >gi|295699461|ref|YP_003607354.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438674|gb|ADG17843.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 189 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 24/50 (48%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R+ + E+ R+G +++ IS++E G+++ + L+ Sbjct: 16 RVKTEREARNWSLAELAERSGVSKAMISKIERGEASPTATVLGRLSGAFG 65 >gi|284036657|ref|YP_003386587.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815950|gb|ADB37788.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 402 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N R +RK LTQ++ + +S + E G++ N N+ +A +T + L Sbjct: 3 LVSDNIRYLRKLNGLTQEQFSRKINIKRSLLGAYEEGRANPNGQNIQAIAKAFNTTVELL 62 Query: 81 LK 82 + Sbjct: 63 TR 64 >gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + F N + +R++ + QKE+ G + +S E ++ + + LA Sbjct: 2 KTKFGTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTEPKMGIVQQLADYFGVSTD 61 Query: 79 KLLK 82 L+K Sbjct: 62 YLIK 65 >gi|254384566|ref|ZP_04999906.1| helix-turn-helix domain containing protein [Streptomyces sp. Mg1] gi|194343451|gb|EDX24417.1| helix-turn-helix domain containing protein [Streptomyces sp. Mg1] Length = 425 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 E R R +Q ++ G+ QS IS LE G+ T +I + +A L Sbjct: 4 TQGEAHRIGELLRQARVLRGRSQADVAADLGYHQSKISRLEGGRGTEDIRVLREVARVLR 63 Query: 75 TPLWKL 80 P L Sbjct: 64 IPPAHL 69 >gi|153939215|ref|YP_001392453.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935111|gb|ABS40609.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320439|gb|ADG00817.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 78 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK---STINIDNMIILAHTLDT 75 + R+ + Q+++ +R G Q ++S+LE +N+D + LA L+ Sbjct: 2 IKIFREHKGIRQEDLASRLGITQPYLSKLENNSIYGINVNVDLIESLAMELNI 54 >gi|154496157|ref|ZP_02034853.1| hypothetical protein BACCAP_00441 [Bacteroides capillosus ATCC 29799] gi|150274712|gb|EDN01776.1| hypothetical protein BACCAP_00441 [Bacteroides capillosus ATCC 29799] Length = 240 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+E +Q+ + G +Q+ +S E G + +I + LL Sbjct: 12 FSRSLSLLRQEKGASQRAVAKDLGISQALLSHYENGIREPGLAFVIKACDYYNVSADFLL 71 >gi|281358257|ref|ZP_06244740.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281315347|gb|EFA99377.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 76 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S L+ R RK L+Q E+ +IS+LE GK TI I ++ + Sbjct: 1 MSKEKLQSAEAIGALIRTTRKTQGLSQAELAGVANTGVRFISDLENGKGTIQIRKLLNVL 60 Query: 71 HTLDTPLW 78 + L L+ Sbjct: 61 NALGLGLY 68 >gi|78189349|ref|YP_379687.1| XRE family transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78171548|gb|ABB28644.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii CaD3] Length = 101 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 25/44 (56%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 + RK+ LTQ+++ + G +++IS +E S I + ++ + Sbjct: 43 IQEARKKQHLTQEQLAEKVGTTKNYISRIENNASDIRLSTLMRI 86 >gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 468 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 7/58 (12%), Positives = 24/58 (41%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R +R E L+Q + + + S+++++E + + ++ ++ Sbjct: 2 AKTYVGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGV 59 >gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|332312705|gb|EGJ25800.1| hypothetical protein LMOSA_2410 [Listeria monocytogenes str. Scott A] Length = 433 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 29/51 (56%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +RK +LTQ++ + +++S++S +ETGK TI ++ + T Sbjct: 4 QEIKILRKRLQLTQQQFAEKLDWSKSYLSMIETGKRTIPKKSIEKIRKTFH 54 >gi|325568711|ref|ZP_08145004.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157749|gb|EGC69905.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + LTQ+++ + IS+ E GKS ++D ++ L++ + L LLK Sbjct: 4 GKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSNYFELTLDYLLK 63 >gi|299141641|ref|ZP_07034777.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] gi|298576977|gb|EFI48847.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella oris C735] Length = 119 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 E + E++ + K +TQK++ G + S IS+ GKS + Sbjct: 44 EEYEKKHHPIEKLTLAEVIKQGLKAKGMTQKDLSQAVGLSTSRISDFTQGKSEPTLATAG 103 Query: 68 ILAHTLDTPLWKLL 81 + LD +L Sbjct: 104 EICRVLDIMPEAML 117 >gi|291525625|emb|CBK91212.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 66 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN R IR++ + Q ++ G++ + +E G ST + + M+ ++ + + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISMYFNMLVED 60 Query: 80 LL 81 + Sbjct: 61 VF 62 >gi|257868763|ref|ZP_05648416.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257802927|gb|EEV31749.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 282 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F RK A ++QKE+ G Q+ +S E ++ +I L + ++ PL L Sbjct: 4 EKFIAARKAAGMSQKELSE--GICTQATLSRFENNGQVPSLKILIKLCNRINLPLVDLF 60 >gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] Length = 66 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R E TQ+E+ R G ++ I+ LE K ++ +A+ + + + Sbjct: 10 RAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVF 61 >gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W] gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W] gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|160895159|ref|ZP_02075932.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] gi|156863193|gb|EDO56624.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] Length = 273 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R + ++Q E+ + + +S E G++ N D + +L+ D + LL Sbjct: 27 ELRTKRGMSQDELAEKIMVTRQAVSRWENGETIPNTDTLKLLSKEFDVSINTLL 80 >gi|114799525|ref|YP_758842.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739699|gb|ABI77824.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 145 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 +R + N R++ KLTQ+++ G + + E G + ++ + +A L Sbjct: 7 PSDIDR-VVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGVL 65 Query: 74 DTP 76 + P Sbjct: 66 EVP 68 >gi|94995013|ref|YP_603111.1| transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548521|gb|ABF38567.1| Transcriptional regulator [Streptococcus pyogenes MGAS10750] Length = 195 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ +I ++++L+ L +L+K Sbjct: 4 GQQMIRYRKQQTLSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63 >gi|118785|sp|P15017|DNU4_RHORU RecName: Full=Uncharacterized transcriptional regulator in ATPase CF(0) region; AltName: Full=URF4 gi|46375|emb|CAA31250.1| ORF 4 (AA 1 - 108); homolog. to DNA-binding proteins [Rhodospirillum rubrum] gi|152603|gb|AAA26459.1| pot. DNA-binding protein (URF4); putative [Rhodospirillum rubrum] Length = 108 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R L Q+ + R G + I + E G++ I+ + +A L P+ Sbjct: 16 VGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPI 71 >gi|28378921|ref|NP_785813.1| hypothetical protein lp_2342 [Lactobacillus plantarum WCFS1] gi|254557126|ref|YP_003063543.1| hypothetical protein JDM1_1959 [Lactobacillus plantarum JDM1] gi|300769678|ref|ZP_07079561.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181129|ref|YP_003925257.1| hypothetical protein LPST_C1947 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271758|emb|CAD64664.1| unknown [Lactobacillus plantarum WCFS1] gi|254046053|gb|ACT62846.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|300492721|gb|EFK27906.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046620|gb|ADN99163.1| hypothetical protein LPST_C1947 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 298 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 I R RK ++QKE+ + G Q+ IS +E ++ M+ + + L L + Sbjct: 3 ILGEKVRQFRKRKGMSQKELAD--GICTQATISLIEKKSKIPSMKIMMKICNRLGIRLSE 60 Query: 80 LL 81 ++ Sbjct: 61 VI 62 >gi|329116698|ref|ZP_08245415.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907103|gb|EGE54017.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 78 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 + ++ N+ ++ R+E L+Q+++ + G +++ I +E + Sbjct: 2 SKQDKNYSEETDLVLKNHLKDTRRELGLSQQQLADMIGVSRNTIGSIERCVFVPTAKLAL 61 Query: 68 ILAHTLDTPLWKLL 81 IL LD +L Sbjct: 62 ILCIALDKKFEELF 75 >gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 149 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ + RK++ L+Q+ + + G ++ IS+ ET ++ +I LA L + Sbjct: 1 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDE 60 Query: 80 LLK 82 L++ Sbjct: 61 LIE 63 >gi|307710039|ref|ZP_07646484.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619224|gb|EFN98355.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 58 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 F+++ E +TQK + + G + + I ++T + I+ NM +A L+ + +L Sbjct: 3 KKFKHLLIEKGMTQKALAEKAGISPNTIRNIKTER--ISFKNMCKIADALEVSIDEL 57 >gi|307067205|ref|YP_003876171.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|306408742|gb|ADM84169.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 65 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 29/50 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 6 EARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 55 >gi|291548332|emb|CBL21440.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 242 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R RK K+T +++ + +++ I + E G +++I+ + ++ L + +L Sbjct: 8 VGEQIRKYRKAGKMTLQDLADAIHKSRATICKYENGDISVDIETLYEISQILQVSMSQL 66 >gi|228989568|ref|ZP_04149552.1| hypothetical protein bpmyx0001_3400 [Bacillus pseudomycoides DSM 12442] gi|228770105|gb|EEM18685.1| hypothetical protein bpmyx0001_3400 [Bacillus pseudomycoides DSM 12442] Length = 83 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R N +R E ++Q + ++ ++ I+ +E K ++ LA L T Sbjct: 14 QARRKDVKNQIYALRTENHISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73 Query: 76 PLWKLL 81 + KL Sbjct: 74 TVDKLF 79 >gi|257388783|ref|YP_003178556.1| XRE family transcriptional regulator [Halomicrobium mukohataei DSM 12286] gi|257171090|gb|ACV48849.1| transcriptional regulator, XRE family [Halomicrobium mukohataei DSM 12286] Length = 180 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 23/49 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R R E LTQ ++ +R +Q I+ +E G + + + + L+ Sbjct: 9 LRERRTELGLTQSKLADRADVSQPLIARIEGGDVDPRLSTLRRIVNALE 57 >gi|254520154|ref|ZP_05132210.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913903|gb|EEH99104.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 434 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E + + RKE +T K++ IS +E+G+S ++D + LA L T + Sbjct: 3 EILALGEKIKRKRKELDMTLKDLAGD-RITPGQISLVESGRSNPSMDLLEYLAGALQTSV 61 Query: 78 WKLLK 82 L++ Sbjct: 62 EYLME 66 >gi|153810945|ref|ZP_01963613.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] gi|149832833|gb|EDM87916.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] Length = 71 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++R ++ L+QK+I +Q S ETG I I+ +I LA DT + L+ Sbjct: 3 FQRIQDLRIDSDLSQKKIGEILHISQRSYSHYETGSRNIPIEMLIRLADYYDTTIDYLV 61 >gi|187929688|ref|YP_001900175.1| helix-turn-helix domain-containing protein [Ralstonia pickettii 12J] gi|187726578|gb|ACD27743.1| helix-turn-helix domain protein [Ralstonia pickettii 12J] Length = 97 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IRK L+Q+ + + +++++S LE + ++ + L ++ Sbjct: 3 AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEIHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|53720722|ref|YP_109708.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|167740433|ref|ZP_02413207.1| putative transcriptional regulator [Burkholderia pseudomallei 14] gi|167817647|ref|ZP_02449327.1| putative transcriptional regulator [Burkholderia pseudomallei 91] gi|167912774|ref|ZP_02499865.1| putative transcriptional regulator [Burkholderia pseudomallei 112] gi|254198530|ref|ZP_04904951.1| putative DNA-binding protein [Burkholderia pseudomallei S13] gi|254300676|ref|ZP_04968121.1| putative DNA-binding protein [Burkholderia pseudomallei 406e] gi|52211136|emb|CAH37125.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|157810610|gb|EDO87780.1| putative DNA-binding protein [Burkholderia pseudomallei 406e] gi|169655270|gb|EDS87963.1| putative DNA-binding protein [Burkholderia pseudomallei S13] Length = 356 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76 + RK +LT+KE+ ++G ++ LETGK + + + + LA L P Sbjct: 5 SKLAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSTETLETLARVLGYP 58 >gi|117927278|ref|YP_871829.1| XRE family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647741|gb|ABK51843.1| transcriptional regulator, XRE family [Acidothermus cellulolyticus 11B] Length = 233 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 26/55 (47%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R R+ A+++ +++ G + ++S++E G + + + +A L L Sbjct: 17 IREQRRLAQMSLRQLARIAGVSNPYLSQVERGLRRPSAEILQQIARGLRISAEAL 71 >gi|145628649|ref|ZP_01784449.1| hypothetical protein CGSHi22121_06525 [Haemophilus influenzae 22.1-21] gi|145632552|ref|ZP_01788286.1| hypothetical protein CGSHi3655_02019 [Haemophilus influenzae 3655] gi|145638786|ref|ZP_01794395.1| hypothetical protein CGSHiII_08726 [Haemophilus influenzae PittII] gi|144979119|gb|EDJ88805.1| hypothetical protein CGSHi22121_06525 [Haemophilus influenzae 22.1-21] gi|144986747|gb|EDJ93299.1| hypothetical protein CGSHi3655_02019 [Haemophilus influenzae 3655] gi|145272381|gb|EDK12289.1| hypothetical protein CGSHiII_08726 [Haemophilus influenzae PittII] gi|309750276|gb|ADO80260.1| Putative transcriptional regulator [Haemophilus influenzae R2866] Length = 140 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +Q+E+ R + + +++E G++ +++D + +A LD + +L+ Sbjct: 5 EKIRKLRETKHWSQEEMAERMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDIVELI 62 >gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 26/54 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + IR++ K++Q+ + ++ G ++ IS E GK+ N ++ L Sbjct: 4 GKQLKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRVS 57 >gi|325959832|ref|YP_004291298.1| helix-turn-helix domain-containing protein [Methanobacterium sp. AL-21] gi|325331264|gb|ADZ10326.1| helix-turn-helix domain protein [Methanobacterium sp. AL-21] Length = 190 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 25/56 (44%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R +R+ ++ +E+ + + + +LE+ ++ ++ +A LD L Sbjct: 6 VGEKIRQLRESKNISIEELAENSDLSVEMVEKLESNTVMPSLSPLLKIAKALDVRL 61 >gi|296268477|ref|YP_003651109.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091264|gb|ADG87216.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 145 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 29/65 (44%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 L + R R++AK++ +++ + + ++S++E G + + + +A L Sbjct: 3 LPKVGSLGEFIRQQRQQAKISLRQLAAQASVSTPYLSQVERGLRKPSAEILNQIAKALSI 62 Query: 76 PLWKL 80 L Sbjct: 63 SAQAL 67 >gi|294338876|emb|CAZ87213.1| putative Shikimate kinase [Thiomonas sp. 3As] Length = 312 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R LT+K + + ++ ++ LE+G +I ++ +A L L +L+ Sbjct: 34 LGERVRALRARRGLTRKAVAIASDVSERHLANLESGVGNASILVLLQVAQALQCSLAELI 93 >gi|291619608|ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103] gi|291154638|gb|ADD79222.1| PuuR [Pantoea ananatis LMG 20103] Length = 203 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 K H D E I + IRK +T KE+ + + IS++E + + Sbjct: 4 KTALMHSEDLSAVEINI-GVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVR 62 Query: 65 NMIILAHTLDTPLWKLLK 82 + L L+ PL L+ Sbjct: 63 VLEQLRVVLNVPLTAFLE 80 >gi|269836517|ref|YP_003318745.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269785780|gb|ACZ37923.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 810 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76 +R F + R+ R+ A LT++E+ R G + + I+ LE G+ + LA L Sbjct: 5 DRPPFGDLLRHYREAASLTREELAERAGLSANGIAALERGERRYPYPHTVRALADALALS 64 Query: 77 LWK 79 + Sbjct: 65 EEE 67 >gi|170781284|ref|YP_001709616.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169155852|emb|CAQ00977.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 191 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M R+ TQ+++ R+G AQS +SELE+G+ + + + + L L Sbjct: 1 MSIGELVHAARRSRGYTQRQLSGRSGVAQSTLSELESGRRSPSAETVDRLLLATGHQL 58 >gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] Length = 364 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+ +TQ E+ + G ++S +S+ E + +I + LA + L +L+ Sbjct: 7 GKNITKFRRSKGITQDELASYIGVSKSSVSKWENSITYPDIMLLPQLATLFNISLDELM 65 >gi|163868998|ref|YP_001610228.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018675|emb|CAK02233.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 25/55 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ R L+QK + N G + I + E G + ++ ++ +A L P+ Sbjct: 21 GARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPI 75 >gi|149013606|ref|ZP_01834177.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147762797|gb|EDK69752.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|301793448|emb|CBW35821.1| Transcriptional regulator [Streptococcus pneumoniae INV104] Length = 288 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +N RKE K++Q+E+ G Q IS LE+G+ T D + LA L + Sbjct: 4 LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSM 59 >gi|86156777|ref|YP_463562.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773288|gb|ABC80125.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 277 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R +Q + G + +S LE G+ST + + ++ LA L PL + Sbjct: 17 LRAWRTARGKSQLALALEAGVSSRHLSYLENGRSTPSREMVLDLAEVLGVPLRE 70 >gi|50842492|ref|YP_055719.1| transcriptional regulator [Propionibacterium acnes KPA171202] gi|282854043|ref|ZP_06263380.1| DNA-binding protein [Propionibacterium acnes J139] gi|289425252|ref|ZP_06427029.1| DNA-binding protein [Propionibacterium acnes SK187] gi|289427058|ref|ZP_06428774.1| DNA-binding protein [Propionibacterium acnes J165] gi|295130569|ref|YP_003581232.1| DNA-binding protein [Propionibacterium acnes SK137] gi|50840094|gb|AAT82761.1| possible transcriptional regulator [Propionibacterium acnes KPA171202] gi|282583496|gb|EFB88876.1| DNA-binding protein [Propionibacterium acnes J139] gi|289154230|gb|EFD02918.1| DNA-binding protein [Propionibacterium acnes SK187] gi|289159527|gb|EFD07715.1| DNA-binding protein [Propionibacterium acnes J165] gi|291375659|gb|ADD99513.1| DNA-binding protein [Propionibacterium acnes SK137] gi|313764480|gb|EFS35844.1| helix-turn-helix protein [Propionibacterium acnes HL013PA1] gi|313772137|gb|EFS38103.1| helix-turn-helix protein [Propionibacterium acnes HL074PA1] gi|313792168|gb|EFS40269.1| helix-turn-helix protein [Propionibacterium acnes HL110PA1] gi|313801880|gb|EFS43114.1| helix-turn-helix protein [Propionibacterium acnes HL110PA2] gi|313807492|gb|EFS45979.1| helix-turn-helix protein [Propionibacterium acnes HL087PA2] gi|313810001|gb|EFS47722.1| helix-turn-helix protein [Propionibacterium acnes HL083PA1] gi|313812967|gb|EFS50681.1| helix-turn-helix protein [Propionibacterium acnes HL025PA1] gi|313816019|gb|EFS53733.1| helix-turn-helix protein [Propionibacterium acnes HL059PA1] gi|313818536|gb|EFS56250.1| helix-turn-helix protein [Propionibacterium acnes HL046PA2] gi|313820302|gb|EFS58016.1| helix-turn-helix protein [Propionibacterium acnes HL036PA1] gi|313822890|gb|EFS60604.1| helix-turn-helix protein [Propionibacterium acnes HL036PA2] gi|313825178|gb|EFS62892.1| helix-turn-helix protein [Propionibacterium acnes HL063PA1] gi|313827751|gb|EFS65465.1| helix-turn-helix protein [Propionibacterium acnes HL063PA2] gi|313830329|gb|EFS68043.1| helix-turn-helix protein [Propionibacterium acnes HL007PA1] gi|313833704|gb|EFS71418.1| helix-turn-helix protein [Propionibacterium acnes HL056PA1] gi|313838707|gb|EFS76421.1| helix-turn-helix protein [Propionibacterium acnes HL086PA1] gi|314915473|gb|EFS79304.1| helix-turn-helix protein [Propionibacterium acnes HL005PA4] gi|314918243|gb|EFS82074.1| helix-turn-helix protein [Propionibacterium acnes HL050PA1] gi|314920056|gb|EFS83887.1| helix-turn-helix protein [Propionibacterium acnes HL050PA3] gi|314923011|gb|EFS86842.1| helix-turn-helix protein [Propionibacterium acnes HL001PA1] gi|314925189|gb|EFS89020.1| helix-turn-helix protein [Propionibacterium acnes HL036PA3] gi|314932070|gb|EFS95901.1| helix-turn-helix protein [Propionibacterium acnes HL067PA1] gi|314955941|gb|EFT00341.1| helix-turn-helix protein [Propionibacterium acnes HL027PA1] gi|314958146|gb|EFT02249.1| helix-turn-helix protein [Propionibacterium acnes HL002PA1] gi|314960027|gb|EFT04129.1| helix-turn-helix protein [Propionibacterium acnes HL002PA2] gi|314962826|gb|EFT06926.1| helix-turn-helix protein [Propionibacterium acnes HL082PA1] gi|314966786|gb|EFT10885.1| helix-turn-helix protein [Propionibacterium acnes HL082PA2] gi|314967807|gb|EFT11906.1| helix-turn-helix protein [Propionibacterium acnes HL037PA1] gi|314973334|gb|EFT17430.1| helix-turn-helix protein [Propionibacterium acnes HL053PA1] gi|314976011|gb|EFT20106.1| helix-turn-helix protein [Propionibacterium acnes HL045PA1] gi|314978450|gb|EFT22544.1| helix-turn-helix protein [Propionibacterium acnes HL072PA2] gi|314981122|gb|EFT25216.1| helix-turn-helix protein [Propionibacterium acnes HL110PA3] gi|314983968|gb|EFT28060.1| helix-turn-helix protein [Propionibacterium acnes HL005PA1] gi|314988151|gb|EFT32242.1| helix-turn-helix protein [Propionibacterium acnes HL005PA2] gi|314989955|gb|EFT34046.1| helix-turn-helix protein [Propionibacterium acnes HL005PA3] gi|315078042|gb|EFT50093.1| helix-turn-helix protein [Propionibacterium acnes HL053PA2] gi|315080667|gb|EFT52643.1| helix-turn-helix protein [Propionibacterium acnes HL078PA1] gi|315084339|gb|EFT56315.1| helix-turn-helix protein [Propionibacterium acnes HL027PA2] gi|315085681|gb|EFT57657.1| helix-turn-helix protein [Propionibacterium acnes HL002PA3] gi|315088898|gb|EFT60874.1| helix-turn-helix protein [Propionibacterium acnes HL072PA1] gi|315091947|gb|EFT63923.1| helix-turn-helix protein [Propionibacterium acnes HL110PA4] gi|315093296|gb|EFT65272.1| helix-turn-helix protein [Propionibacterium acnes HL060PA1] gi|315096249|gb|EFT68225.1| helix-turn-helix protein [Propionibacterium acnes HL038PA1] gi|315098511|gb|EFT70487.1| helix-turn-helix protein [Propionibacterium acnes HL059PA2] gi|315101132|gb|EFT73108.1| helix-turn-helix protein [Propionibacterium acnes HL046PA1] gi|315103448|gb|EFT75424.1| helix-turn-helix protein [Propionibacterium acnes HL050PA2] gi|315105408|gb|EFT77384.1| helix-turn-helix protein [Propionibacterium acnes HL030PA1] gi|315108352|gb|EFT80328.1| helix-turn-helix protein [Propionibacterium acnes HL030PA2] gi|327326162|gb|EGE67952.1| putative DNA-binding protein [Propionibacterium acnes HL096PA2] gi|327327612|gb|EGE69388.1| putative DNA-binding protein [Propionibacterium acnes HL103PA1] gi|327330231|gb|EGE71980.1| putative DNA-binding protein [Propionibacterium acnes HL097PA1] gi|327331963|gb|EGE73700.1| putative DNA-binding protein [Propionibacterium acnes HL096PA3] gi|327443164|gb|EGE89818.1| helix-turn-helix protein [Propionibacterium acnes HL013PA2] gi|327445951|gb|EGE92605.1| helix-turn-helix protein [Propionibacterium acnes HL043PA2] gi|327448070|gb|EGE94724.1| helix-turn-helix protein [Propionibacterium acnes HL043PA1] gi|327450807|gb|EGE97461.1| helix-turn-helix protein [Propionibacterium acnes HL087PA3] gi|327453115|gb|EGE99769.1| helix-turn-helix protein [Propionibacterium acnes HL092PA1] gi|327453847|gb|EGF00502.1| helix-turn-helix protein [Propionibacterium acnes HL083PA2] gi|328753495|gb|EGF67111.1| helix-turn-helix protein [Propionibacterium acnes HL020PA1] gi|328754227|gb|EGF67843.1| helix-turn-helix protein [Propionibacterium acnes HL087PA1] gi|328754522|gb|EGF68138.1| helix-turn-helix protein [Propionibacterium acnes HL025PA2] gi|328760616|gb|EGF74183.1| putative DNA-binding protein [Propionibacterium acnes HL099PA1] gi|332675409|gb|AEE72225.1| putative transcriptional regulator [Propionibacterium acnes 266] Length = 91 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R T +E+ + + ++SE+E G+ + + + + LD P Sbjct: 7 REMLGESLREQRFAQGRTLREVSSAARVSLGYLSEVERGQKEASSELISAICTALDLPQS 66 Query: 79 KLLK 82 L++ Sbjct: 67 DLMR 70 >gi|146280149|ref|YP_001170306.1| hypothetical protein Rsph17025_4150 [Rhodobacter sphaeroides ATCC 17025] gi|145558390|gb|ABP73001.1| hypothetical protein Rsph17025_4150 [Rhodobacter sphaeroides ATCC 17025] Length = 96 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R L ++ TG + +S +ETGK + + +A L PL LL Sbjct: 13 VGQRIRVRRAAEGLNLGQLARLTGISGPALSLIETGKRDARLTTLARIAAALRVPLEALL 72 >gi|319654589|ref|ZP_08008671.1| hypothetical protein HMPREF1013_05293 [Bacillus sp. 2_A_57_CT2] gi|317393764|gb|EFV74520.1| hypothetical protein HMPREF1013_05293 [Bacillus sp. 2_A_57_CT2] Length = 77 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 N + +R + +LTQKE+ TG + IS LE K+ N+ LA + ++ Sbjct: 6 GVNLKVLRLKNRLTQKEVAAATGLSHRTISNLENNKNFPQRGNLAKLAKLYGVTVEEI 63 >gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661] gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661] Length = 229 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +RK K+T + + G +S LE G + + LA L P+ L Sbjct: 4 GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGYSDALLQKLADALAVPISALF 62 >gi|183600445|ref|ZP_02961938.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC 25827] gi|188019929|gb|EDU57969.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC 25827] Length = 91 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + ++ R R + L+ E+ N +Q IS E G + +++D +I + LD + + Sbjct: 12 LLGHHLRQARMKRGLSGHELANIINLSQQQISRYERGVNKLSLDKLIEIIVFLDIDVKDI 71 Query: 81 LK 82 ++ Sbjct: 72 VR 73 >gi|114327636|ref|YP_744793.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1] gi|114315810|gb|ABI61870.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 286 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R E+ L +EI R G +++ + E G+ I +D + LA L LL Sbjct: 9 GQRLRAYRLESGLRAEEIAARLGVSRAALYRYEKGEV-IKLDTVQRLAELLQVSPLSLL 66 >gi|84686278|ref|ZP_01014173.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665805|gb|EAQ12280.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 463 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 27/64 (42%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R R LTQK + G + +++++E ++ ++ LA Sbjct: 3 TQKLYAGVKLRETRTRLGLTQKAFAEKLGVSLPYLNQMENNNRPVSTGVVLALAQEFGFD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VAEL 66 >gi|146277511|ref|YP_001167670.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555752|gb|ABP70365.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 428 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 26/65 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + + + R R + L Q ++ G + S+++ +E + I + + LA L Sbjct: 1 MPMTALTGSRVRERRLQLGLRQADLARSAGISASYLNLIEHNRRRIGDEVLGRLARALKI 60 Query: 76 PLWKL 80 L Sbjct: 61 EAQTL 65 >gi|326793433|ref|YP_004311253.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] gi|326544197|gb|ADZ89417.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] Length = 266 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + +N RK+ + +Q ++ G + +S LETG+S + D ++ L L P ++ Sbjct: 5 YGVILKNWRKQRRYSQLQLSLEAGISSRHLSFLETGRSLPSKDTVVKLGDFLKIPKREI 63 >gi|325977463|ref|YP_004287179.1| SPBc2 prophage-derived HTH-type transcriptional regulator yonR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177391|emb|CBZ47435.1| SPBc2 prophage-derived uncharacterized HTH-type transcriptional regulator yonR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 110 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RKE KL+Q+++ G I +ET K I + + L+ + Sbjct: 13 RIRECRKEKKLSQEKLSEMAGLGIKAIQNIETQKYDFKIQTLEKVIGALNISVEDFF 69 >gi|309780604|ref|ZP_07675349.1| toxin-antitoxin system, antitoxin component, Xre family [Ralstonia sp. 5_7_47FAA] gi|308920624|gb|EFP66276.1| toxin-antitoxin system, antitoxin component, Xre family [Ralstonia sp. 5_7_47FAA] Length = 298 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R F R R +Q + G +Q +S LE+ ++ + + ++ LA Sbjct: 14 EPPEAARSRFPQLLRFWRTRRGYSQLALALAAGVSQRHVSFLESARAAPSRNMILQLAEE 73 Query: 73 LDTPLWK 79 L+ PL Sbjct: 74 LNVPLRH 80 >gi|307131776|ref|YP_003883792.1| transcriptional regulator-like protein [Dickeya dadantii 3937] gi|306529305|gb|ADM99235.1| transcriptional regulator-like protein [Dickeya dadantii 3937] Length = 91 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 RN+R E +LT +E+ R G ++ + E G I + LA + PL+ + Sbjct: 3 IRNMRIERQLTVEELAERAGVSRGLVYRAEEGDMGCAIGAVFELATLVGVPLFTM 57 >gi|291548979|emb|CBL25241.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] gi|295110025|emb|CBL23978.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 67 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F+ N + R LTQ+++ + G + I LE + ++ I ++ L+ P+ + Sbjct: 5 FMCNLKVYRVAQGLTQEQLAEKVGVRRETIMRLEKAQYNPSLKLAIDISRVLNAPIEDIF 64 >gi|284031267|ref|YP_003381198.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283810560|gb|ADB32399.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 397 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80 RK ++Q + G ++SW+S++E G ++ + + LA L + L Sbjct: 3 VGERIGAYRKRRGMSQDALAGLIGMSRSWLSQVERGIRGVDRLSTLNDLATVLRIDVADL 62 Query: 81 L 81 + Sbjct: 63 I 63 >gi|257792281|ref|YP_003182887.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476178|gb|ACV56498.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 104 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 1 MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 M ++E L +R+ + ++R L+Q + G IS LE G Sbjct: 1 MSEMSKNEKMARKDPLVQRLSADLGSRLLDVRTSEGLSQTTLAEMVGTKHPRISNLEGGL 60 Query: 59 STINIDNMIILAHTLDTPLWKLL 81 + + +++ LA LD +LL Sbjct: 61 VDVRLSDIVKLARALDVNPGELL 83 >gi|257080388|ref|ZP_05574749.1| transcriptional regulator [Enterococcus faecalis E1Sol] gi|256988418|gb|EEU75720.1| transcriptional regulator [Enterococcus faecalis E1Sol] Length = 400 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 26/49 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R ++Q ++ G ++ ++SE+ET K+ +I + L + L+ Sbjct: 16 LKERRNAYGVSQNKLATAAGISRQYLSEIETEKTVPSITLLTTLNNVLE 64 >gi|258652988|ref|YP_003202144.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556213|gb|ACV79155.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 135 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R R+ R T +++ + ++SE+E G+ + + + + LD L Sbjct: 4 RDAVGETLRDARNRQNRTLRDVSTAANVSLGYLSEVERGRKEASSELLASICDALDLELS 63 Query: 79 KLL 81 L Sbjct: 64 DFL 66 >gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 180 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R L+Q+E+ R G IS +E + + ++ ++ + L L Sbjct: 4 GARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPMTLSDFFT 63 >gi|210608500|ref|ZP_03287876.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] gi|210152991|gb|EEA83997.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] Length = 119 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F NN +++R+ +TQ ++ ++ I+ ET + + + LA+ + L+ Sbjct: 3 FGNNLKDLRETRNVTQGQLAEYLQVSRPTIAGYETKSRQPDFEKLEKLANYFHVSIDYLV 62 >gi|194289442|ref|YP_002005349.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223277|emb|CAQ69282.1| putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif [Cupriavidus taiwanensis LMG 19424] Length = 315 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R +++K++ ++ +++ LETG ++ + +A LD PL +L Sbjct: 35 LGERIRSLRASRGMSRKDLARGAAVSERYLANLETGTGNASVLLLRQVARALDVPLPVVL 94 >gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 121 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F R +RK+ +TQK++ ++ +S I E + + + + LA + Sbjct: 1 MTFGKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDEREPSFEFVRQLADFFNVTTDY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|90425003|ref|YP_533373.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107017|gb|ABD89054.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 471 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 28/57 (49%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ + +R+E +LTQ + + G + S++++LE + + + + L T Sbjct: 2 KKTFLGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRPLTLPVALALNKTFG 58 >gi|301056818|ref|YP_003795029.1| transcriptional activator [Bacillus anthracis CI] gi|300378987|gb|ADK07891.1| transcriptional activator [Bacillus cereus biovar anthracis str. CI] Length = 289 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|300117865|ref|ZP_07055632.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] gi|298724729|gb|EFI65404.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] Length = 285 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|284007380|emb|CBA72775.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 100 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R++ +++ ++ G +Q +S E G+ IN++ +I ++ LD Sbjct: 17 GQMIRKKRQKLQISAADLSALLGISQQHLSRYERGEVRINVEWLIKVSRVLDI 69 >gi|266622898|ref|ZP_06115833.1| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288865341|gb|EFC97639.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 110 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R RN RK LT E+ + G A + ++E G ++ID ++ L TL+ Sbjct: 5 RTEAALRIRNRRKALGLTSAEVAEKIGRADHYYGDIERGTCGMSIDTLVELTRTLELS 62 >gi|260580707|ref|ZP_05848533.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|260092524|gb|EEW76461.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 127 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 32/57 (56%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +L+Q+++ + + S +++E G++ + D ++ +A + L +L+ Sbjct: 6 KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNMNLSELV 62 >gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3] gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3] Length = 118 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + +RKE K +QKE+ + ++S++S++E+GK + + +A + L Sbjct: 4 ILSVRIKELRKERKWSQKELGEKVDVSESFVSKVESGKKQPSREVTAKIAEVFNVTTDFL 63 Query: 81 L 81 L Sbjct: 64 L 64 >gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM 15981] gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme DSM 15981] Length = 1690 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 + +R LTQ ++ R G QS +S E K I+++ L L Sbjct: 30 LAEQIKALRIARGLTQNDLAERMGVPQSQVSRWEN-KGGCEIESLERLCKAL 80 >gi|223985560|ref|ZP_03635614.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] gi|223962467|gb|EEF66925.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] Length = 174 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 ++ ++ N R +R+E ++Q+ + + IS E + +I+ + +A Sbjct: 13 MKAKLSLGENLRLLREERGISQEALGQDLSLSDGAISRYENNAAEPDINTLFGMAEIFGV 72 Query: 76 PLWKLL 81 LL Sbjct: 73 DFNYLL 78 >gi|188588059|ref|YP_001921522.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498340|gb|ACD51476.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 114 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + +N + +R E L+Q ++ +Q +S E G I+ + L++ Sbjct: 2 RCLIMNRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSNFFSVSSD 61 Query: 79 KLL 81 LL Sbjct: 62 YLL 64 >gi|196036534|ref|ZP_03103929.1| putative transcriptional regulator PlcR [Bacillus cereus W] gi|228949071|ref|ZP_04111343.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195990867|gb|EDX54840.1| putative transcriptional regulator PlcR [Bacillus cereus W] gi|228810644|gb|EEM56993.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 285 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|153812273|ref|ZP_01964941.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174] gi|149831680|gb|EDM86767.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174] Length = 493 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RKE +TQ+E+ + TG +S +S LE +I + L L + Sbjct: 17 RKEKSMTQQELADATGINRSLLSRLEKKDFIPSIPQLESLGECLGFDPDEAFT 69 >gi|118480383|ref|YP_897534.1| transcription activator PlcR [Bacillus thuringiensis str. Al Hakam] gi|196045523|ref|ZP_03112754.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108] gi|225867332|ref|YP_002752710.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102] gi|229187576|ref|ZP_04314716.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1] gi|118419608|gb|ABK88027.1| transcription activator PlcR [Bacillus thuringiensis str. Al Hakam] gi|196023730|gb|EDX62406.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108] gi|225786453|gb|ACO26670.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102] gi|228595943|gb|EEK53623.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1] Length = 285 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|126698076|ref|YP_001086973.1| putative conjugative transposon replication initiation factor [Clostridium difficile 630] gi|256957652|ref|ZP_05561823.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|115249513|emb|CAJ67329.1| putative replication initiation factor Tn5397,CTn3-Orf20 [Clostridium difficile] gi|256948148|gb|EEU64780.1| conserved hypothetical protein [Enterococcus faecalis DS5] Length = 402 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----D 74 +V + + R L+Q + TG + ++S++ETGK + + + L TL D Sbjct: 10 QTWVQHLKEKRLSYGLSQNRLAIATGITRQYLSDIETGKVKPSDELQLALLETLERFNPD 69 Query: 75 TPLWKLL 81 PL L Sbjct: 70 APLEMLF 76 >gi|45359010|ref|NP_988567.1| Cro repressor family protein [Methanococcus maripaludis S2] gi|45047885|emb|CAF31003.1| Cro repressor family Helix-turn-helix motif containing protein [Methanococcus maripaludis S2] Length = 212 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query: 12 SDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 + ER I +N N + R++ K+TQ ++ +G +QS +S LE GK I Sbjct: 3 DKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 54 >gi|37650510|emb|CAE47444.1| PlcR protein [Bacillus thuringiensis serovar tohokuensis] Length = 285 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 N + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|288922657|ref|ZP_06416832.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288345981|gb|EFC80335.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 301 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 9 PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 + ++R+E LT + + + +Q+ IS+LE G+ ++ Sbjct: 11 HDDDHGDEPDAAAIGRILGSLRRERGLTGEALGAQVDMSQAKISKLERGQLRPTPADVER 70 Query: 69 LAHTLDTP 76 +A L+ P Sbjct: 71 IARALEAP 78 >gi|257890009|ref|ZP_05669662.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260560174|ref|ZP_05832351.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|257826369|gb|EEV52995.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073741|gb|EEW62066.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] Length = 87 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKE L+Q E+ + Q +S +TG++ M +L+ L P+ +L Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78 >gi|228915213|ref|ZP_04078808.1| hypothetical protein bthur0012_24330 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844444|gb|EEM89500.1| hypothetical protein bthur0012_24330 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 63 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R E T +E+ G + + +E GK D ++ +A L Sbjct: 2 KTLKQLRVEQGYTCREVAEAVGITEVYYWYIENGKRRPYYDLIVKIAEFFKVKL 55 >gi|228950423|ref|ZP_04112583.1| hypothetical protein bthur0007_64790 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228961930|ref|ZP_04123470.1| hypothetical protein bthur0005_53320 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296503153|ref|YP_003664853.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|228797753|gb|EEM44826.1| hypothetical protein bthur0005_53320 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228809238|gb|EEM55699.1| hypothetical protein bthur0007_64790 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|296324205|gb|ADH07133.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 63 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 21/54 (38%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +R E T +E+ G + + +E GK D ++ +A L Sbjct: 2 KTLKQLRVEQGYTCREVAEAVGITEVYYWYIENGKRRPYYDLIVKIAEFFKVKL 55 >gi|167761830|ref|ZP_02433957.1| hypothetical protein BACSTE_00173 [Bacteroides stercoris ATCC 43183] gi|167700336|gb|EDS16915.1| hypothetical protein BACSTE_00173 [Bacteroides stercoris ATCC 43183] Length = 90 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 K+A +TQKE+ R G + +S+ G D + +A L+ + +L + Sbjct: 10 KQAGITQKELAERIGLSAVGLSKAING--NPTKDTLEKIASALNVRITELFE 59 >gi|90413760|ref|ZP_01221748.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90325229|gb|EAS41726.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 126 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R R+ +TQ + G A+ +LE+GK+ I ++ +A PL Sbjct: 14 ATKIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRISTLVSIADITGRPL 68 >gi|75759185|ref|ZP_00739288.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899110|ref|ZP_04063382.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] gi|228906175|ref|ZP_04070064.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228937680|ref|ZP_04100316.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950943|ref|ZP_04113064.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956851|ref|ZP_04118636.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970568|ref|ZP_04131218.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977138|ref|ZP_04137539.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|229077745|ref|ZP_04210374.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|229125885|ref|ZP_04254910.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|229148790|ref|ZP_04277039.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|74493347|gb|EAO56460.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228634678|gb|EEK91258.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|228657543|gb|EEL13356.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|228705567|gb|EEL57924.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|228782586|gb|EEM30763.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|228789155|gb|EEM37084.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228802892|gb|EEM49725.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808670|gb|EEM55168.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821967|gb|EEM67959.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853584|gb|EEM98352.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228860551|gb|EEN04939.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] Length = 83 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +R E ++Q + ++ ++ I+ +E K ++ LA L T + KL Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|69245870|ref|ZP_00603687.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853747|ref|ZP_05559112.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879179|ref|ZP_05658832.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882002|ref|ZP_05661655.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|68195572|gb|EAN10014.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710690|gb|EEU25733.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813407|gb|EEV42165.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817660|gb|EEV44988.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] Length = 87 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKE L+Q E+ + Q +S +TG++ M +L+ L P+ +L Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78 >gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 119 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++R+ ++Q+E+ G ++ IS E G+ + + +A+ Sbjct: 2 EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 >gi|295101241|emb|CBK98786.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 74 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M++ + +R + L Q ++ AQ+ S+ E GK I ++ +I LA D + Sbjct: 1 MLYTERIKALRSDHDLNQTQVARAIHVAQTTYSDYEKGKVRIPVECLIQLAKFYDVDM 58 >gi|294101936|ref|YP_003553794.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616916|gb|ADE57070.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 143 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISE-LETGKSTINIDNMIILAHTLD 74 R+ F+N+ + ++QKE+ R G ++++IS+ + + S + MI L LD Sbjct: 26 RLDFLNSLIATIEAKGISQKELGKRLGKSEAYISKVINSNSSNFTLKTMIQLCLALD 82 >gi|292653871|ref|YP_003533769.1| Helix-turn-helix, putative [Haloferax volcanii DS2] gi|291369721|gb|ADE01949.1| Helix-turn-helix, putative [Haloferax volcanii DS2] Length = 66 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 N+ R R E +TQ+E+ G ++ I +E + +++ LA D + +L P Sbjct: 3 NDIRVKRAEEHITQEELATAVGVSRQTIYAIEHSRYDPSLELAFKLARYFDCSVEELFTP 62 >gi|260885325|ref|ZP_05734776.2| toxin-antitoxin system, antitoxin component, Xre family [Prevotella tannerae ATCC 51259] gi|260852826|gb|EEX72695.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella tannerae ATCC 51259] Length = 81 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 25/52 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 RKEAKLTQ E+ R G +S+IS++E G + L +D Sbjct: 19 AQILLQARKEAKLTQSELAKRVGTTKSYISKIENGVIEPGVGLFFRLIAAMD 70 >gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|253579633|ref|ZP_04856902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849134|gb|EES77095.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 74 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +++R +A ++QK++ +Q S ETG I ++ +I LA+ D + L+ Sbjct: 6 FQRIQDLRTDADMSQKQLSEILHISQRSYSHYETGSRNIPVEMLIRLANYYDISVDYLV 64 >gi|209559928|ref|YP_002286400.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|209541129|gb|ACI61705.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] Length = 195 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 RK+ L+Q+E+ + ++ IS E K+ + ++++L+ L +L+K Sbjct: 4 GQQIIRYRKQQALSQEELAEKVYVSRQSISHWENDKTYPVLASLLLLSQIFQVSLNQLIK 63 >gi|182438457|ref|YP_001826176.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466973|dbj|BAG21493.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 281 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 16 LRERMIFVNNFRNIRKE---AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72 + R R +R E +LT + R G+AQS +S+LE G+ T +++ A Sbjct: 6 QKAREDLGRRLRVLRIECPHGRLTGTALSARLGWAQSKVSKLENGRQTPTAEDLRAWADA 65 Query: 73 LDTP 76 P Sbjct: 66 TGHP 69 >gi|196042830|ref|ZP_03110069.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229185561|ref|ZP_04312741.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] gi|196026314|gb|EDX64982.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228597956|gb|EEK55596.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|118478614|ref|YP_895765.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118417839|gb|ABK86258.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|94263490|ref|ZP_01287302.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93456128|gb|EAT06271.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 121 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 23/50 (46%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R R LTQ ++ TG Q ISE+E GK I + LA L+ Sbjct: 66 LRGYRYREDLTQAQLAELTGIPQRHISEMENGKRPIGKERARKLAEVLNV 115 >gi|22538127|ref|NP_688978.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22535034|gb|AAN00851.1|AE014281_20 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 204 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F N +RKE ++Q E+ N+ + IS+ E K+ N+ +A +L Sbjct: 8 FGPNLTRLRKERGISQVELSNQLQIGKQSISDYEKQKAFPTFANLDKIAEYFRATPTQLF 67 >gi|329577286|gb|EGG58747.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 377 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 16 LRERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ER+ F + R LT KE+ ++G ++ IS E+GK+ ++++ L L+ Sbjct: 1 MKERIAFNPKQLTSARISRGLTMKELAEKSGLSRQMISNYESGKTIQKAESLLKLLSVLN 60 Query: 75 TP 76 P Sbjct: 61 FP 62 >gi|329116452|ref|ZP_08245169.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906857|gb|EGE53771.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 122 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++ R E +Q + ++ ++ IS+ E ++ ++ N+I L+ + L +L+ Sbjct: 4 FSEQLKHFRLEKNFSQDYLADQLFISRQAISKWENNEAYPDMTNLIKLSTIFEVSLDQLI 63 >gi|325661078|ref|ZP_08149705.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085193|ref|ZP_08334279.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472585|gb|EGC75796.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407976|gb|EGG87466.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 195 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++ K++Q+E+ + ++ IS ET KS ++ ++I L++ + L +K Sbjct: 4 GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLISLSNIFNVSLDNFIK 63 >gi|295688772|ref|YP_003592465.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430675|gb|ADG09847.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 115 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 R ++ R+ A LTQ E+ +TG +++S++E G + I+ + A +L Sbjct: 18 RREAGRWLKSAREAAGLTQAELAEKTGLRYYTFVSQVENGLGRVPIEAQAVWAESLGLDP 77 Query: 78 WKLLK 82 + + Sbjct: 78 SQFAR 82 >gi|256423820|ref|YP_003124473.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038728|gb|ACU62272.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 193 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + R+E +T +++ +R ++ IS++E ++ ++ +I + L+ L K Sbjct: 11 NRIKEKRREKNITVQDLADRAKVSKGLISQIENSRTIPSLIVLIDIIRALEIDLNVFFK 69 >gi|296137789|ref|YP_003645032.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296025923|gb|ADG76693.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 377 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS--TINIDNMIILAHTLDTPLWK 79 + R ++Q+++ +R ++SWI +LE + + + ++ L PL Sbjct: 6 LGERIKAWRLRRGMSQQDLADRMSRSKSWIQKLEGSERHSDPRLSVLREVSEALGVPLSI 65 Query: 80 LLK 82 L++ Sbjct: 66 LIR 68 >gi|171916012|ref|ZP_02931482.1| transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 70 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R E LTQ E+ G ++ ++ LET K + ++D ++ P+ ++ + Sbjct: 3 NRLKVLRAEHNLTQDELGKILGVSRQAVNALETEKHSPSLDLAYRISTVFKQPVEQIFQ 61 >gi|168213632|ref|ZP_02639257.1| putative DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170714789|gb|EDT26971.1| putative DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 290 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R + LTQKE+ + ++ I + E+GK I + L + L LL Sbjct: 6 LGNNIKKYRNQIGLTQKELGEKILKSEISIRKYESGKINIPPSTLFELCKIFNVTLGTLL 65 >gi|156933898|ref|YP_001437814.1| hypothetical protein ESA_01724 [Cronobacter sakazakii ATCC BAA-894] gi|156532152|gb|ABU76978.1| hypothetical protein ESA_01724 [Cronobacter sakazakii ATCC BAA-894] Length = 176 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 27/62 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ + + TG +++ + ++E +S+ + + +A + P + Sbjct: 7 LAQTLKALRQQKNWSLTQAAQETGVSKAMLGQIERNESSPTVATLWKIATGFNVPFSAFI 66 Query: 82 KP 83 P Sbjct: 67 TP 68 >gi|153954897|ref|YP_001395662.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855349|ref|YP_002472471.1| hypothetical protein CKR_2006 [Clostridium kluyveri NBRC 12016] gi|146347755|gb|EDK34291.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569073|dbj|BAH07057.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 71 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R E ++Q ++ + G ++ IS +ETG+ + +IL+ L L Sbjct: 9 NRLKVARAELNISQGQLASMAGVSRQTISSIETGQYCPSAKLALILSKCLQKNFEDLF 66 >gi|21231057|ref|NP_636974.1| hypothetical protein XCC1604 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768938|ref|YP_243700.1| hypothetical protein XC_2631 [Xanthomonas campestris pv. campestris str. 8004] gi|21112686|gb|AAM40898.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574270|gb|AAY49680.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 113 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW-----ISELETGKSTINIDN 65 + ++ R+ R TQ E+ R G S +S ETG+ + Sbjct: 1 MPKPKTPA-TVYGTRLRHARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPAT 59 Query: 66 MIILAHTLDTP 76 LA L P Sbjct: 60 AEALAKALKLP 70 >gi|324328969|gb|ADY24229.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 69 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N R +R + +L+Q ++ G ++ IS +E G +I + +A + P+ ++ + Sbjct: 5 NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFE 63 >gi|313667428|ref|YP_004047712.1| hypothetical protein NLA_0720 [Neisseria lactamica ST-640] gi|313004890|emb|CBN86316.1| hypothetical protein NLA_0720 [Neisseria lactamica 020-06] Length = 136 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 30/60 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R +R+ + +Q+ + + + + +++E G++ +N+ + +A L LL+P Sbjct: 5 EKIRLMRELKQWSQETVAEKLNLSTNGYAKIERGETKLNLPRLEQIATIFHVDLMDLLQP 64 >gi|310822072|ref|YP_003954430.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|309395144|gb|ADO72603.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 119 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R R LTQ E+ + G A S LE GK ++ ++ + L +LL Sbjct: 10 GSAAREARTHLGLTQAEVAGKLGIAHMVYSRLERGKMLPSVPTLLRMCSVLHISADELL 68 >gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6] gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6] Length = 141 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+E KL+QKE+ G + E G+S I + LA + LL Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAQQLADFFGVSVGYLL 59 >gi|288801315|ref|ZP_06406769.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331698|gb|EFC70182.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str. F0039] Length = 74 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + R I + +RK+ KLTQ ++ + G ++ ELE GK+T+ +D + + + Sbjct: 1 MVARTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVQELEQGKTTLRLDKVNKVFELFGS 60 Query: 76 P 76 Sbjct: 61 E 61 >gi|262380971|ref|ZP_06074109.1| predicted protein [Bacteroides sp. 2_1_33B] gi|262296148|gb|EEY84078.1| predicted protein [Bacteroides sp. 2_1_33B] Length = 88 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++I E LT KE+ + G + + + GK + + + +A L+ P W+L Sbjct: 3 NRIKDILSEKGLTAKELSSVIGLSSVSLYNIINGKQEASANTLNAIATALNVPFWQLF 60 >gi|256839127|ref|ZP_05544637.1| predicted protein [Parabacteroides sp. D13] gi|256740046|gb|EEU53370.1| predicted protein [Parabacteroides sp. D13] Length = 106 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++I E LT KE+ + G + + + GK + + + +A L+ P W+L Sbjct: 20 NRIKDILSEKGLTAKELSSVIGLSSVSLYNIINGKQEASANTLNAIATALNVPFWQLF 77 >gi|240950441|ref|ZP_04754690.1| hypothetical protein AM305_04097 [Actinobacillus minor NM305] gi|240295024|gb|EER45885.1| hypothetical protein AM305_04097 [Actinobacillus minor NM305] Length = 95 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ LTQ E+ +R G + + +++E G++ + I + + DT + +L+ Sbjct: 5 EKIRFLRESKSLTQDEMADRLGMSTNGYAKIERGETRLTIPKLEQIVEVFDTDILELM 62 >gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] Length = 115 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 N R +R+E +TQ + G AQ IS E G+ ++ +I L+ LD + Sbjct: 6 NRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASM 59 >gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1] gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1] Length = 374 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|170747509|ref|YP_001753769.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654031|gb|ACB23086.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 186 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R L+Q+ + R G S IS +E + ++ + + + + + Sbjct: 5 VGARLRFVRARHGLSQRTLAKRAGVTNSAISLIEANRVNPSVGALKRILDGVPIGMAEFF 64 >gi|168214025|ref|ZP_02639650.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] gi|170714494|gb|EDT26676.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] Length = 204 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82 R++ +++ ++ G + ++I++LE G KS +++ I +A+ L+ P+ L+ Sbjct: 11 REKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITVFLE 64 >gi|160936310|ref|ZP_02083680.1| hypothetical protein CLOBOL_01203 [Clostridium bolteae ATCC BAA-613] gi|158440779|gb|EDP18510.1| hypothetical protein CLOBOL_01203 [Clostridium bolteae ATCC BAA-613] Length = 407 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 27/55 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +V + R+ ++Q+++ G + ++S++ETGK+ + + L+ Sbjct: 18 ETWVREIKEKREIYGISQQKLALAAGITRPYLSDIETGKAHPSEALQEAIMEALE 72 >gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] Length = 144 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + +R+E + Q E+ + +S E K T + D + +A + + Sbjct: 2 KTIGERIKELREEKGINQLELSKILNVHKGSVSNWENNKRTPDADMLTKIADFFNCSVDY 61 Query: 80 LL 81 LL Sbjct: 62 LL 63 >gi|119475767|ref|ZP_01616120.1| hypothetical protein GP2143_18146 [marine gamma proteobacterium HTCC2143] gi|119451970|gb|EAW33203.1| hypothetical protein GP2143_18146 [marine gamma proteobacterium HTCC2143] Length = 279 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F + R L+Q+E+ +R + IS LE G S + + +A L+ Sbjct: 10 FGRFLKFWRGVHSLSQEELAHRLDSSTRHISRLENGSSRPSENMAQDIAAALE 62 >gi|145593398|ref|YP_001157695.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145302735|gb|ABP53317.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 402 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-P 76 +++I +R+ A L+++ + G + + + +E G+ ++ + LA L Sbjct: 4 QQIIPGERVERLRRAAGLSRERLAGLAGLSATTVKFIENGRRSLTLRAAQQLAPHLGVRD 63 Query: 77 LWKLLKP 83 L L P Sbjct: 64 LGDLFGP 70 >gi|27375181|ref|NP_766710.1| hypothetical protein bll0070 [Bradyrhizobium japonicum USDA 110] gi|27348317|dbj|BAC45335.1| bll0070 [Bradyrhizobium japonicum USDA 110] Length = 131 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 MP + + + F N RK LTQ ++ ++ +++ I+ +E+G+ Sbjct: 1 MPEAAQTSAMAGNPVYIA---FGNAVSTRRKALSLTQAQLASKVKMSRASIANIESGRQN 57 Query: 61 INIDNMIILAHTLDTPLWKLLKP 83 I + ++ LA LD L P Sbjct: 58 ILLHHVYALATALDFAKVADLLP 80 >gi|150018373|ref|YP_001310627.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904838|gb|ABR35671.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 68 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 N IRK+ + Q+E+ ++ I LE G+ +I +A+ + Sbjct: 3 NRLEEIRKKHGIKQEELAIALEVSRQTIGSLENGRYNPSIILAFKIANYFNMS 55 >gi|148548767|ref|YP_001268869.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512825|gb|ABQ79685.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 184 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83 +RK LT E+ R + ++S++E G S + ++ ++ L + L KP Sbjct: 17 LRKFKNLTLGELAERINRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74 >gi|307280502|ref|ZP_07561551.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306504050|gb|EFM73266.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 394 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 29/59 (49%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R + ++ R E ++Q ++ G ++ +++++E G T + M + L+ Sbjct: 1 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFDQLE 59 >gi|302385132|ref|YP_003820954.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195760|gb|ADL03331.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 174 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 25/52 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N + +RK+ L+Q+E R ++ IS++E G + + + ++ Sbjct: 3 NRIKEVRKKLGLSQEEFGKRLRVTKTSISKIEAGINNPSDQTIKLICSEFSV 54 >gi|241763784|ref|ZP_04761831.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367003|gb|EER61399.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 102 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK A LTQ ++ R G ++ + E G+ + +A L L Sbjct: 9 LALARKAAGLTQAQLAERAGLSRMTVQRTEGGELDPRFSTLAEMARVLGMDL 60 >gi|254390935|ref|ZP_05006145.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294816563|ref|ZP_06775205.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445482|ref|ZP_08220216.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704632|gb|EDY50444.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321378|gb|EFG03513.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 480 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 16 LRERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 R I+ R +R+E + Q E+ + S+ ++LE + + ++ +A Sbjct: 5 PTGRRIYAHAKLRRLRREHGMNQVEMARALAISTSYANQLEQSQRPLTAPVLLRIAEVFG 64 Query: 75 TPL 77 Sbjct: 65 VDP 67 >gi|160944362|ref|ZP_02091590.1| hypothetical protein FAEPRAM212_01872 [Faecalibacterium prausnitzii M21/2] gi|158444144|gb|EDP21148.1| hypothetical protein FAEPRAM212_01872 [Faecalibacterium prausnitzii M21/2] Length = 102 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 +F +R + ++ +++ G +I +E+G + + N + L+ + Sbjct: 4 KLFSKRLAELRIQKGVSARDMSLSLGQNPGYIRTIESGSAFPAMSNFFYICEYLNVTPQE 63 Query: 80 LL 81 Sbjct: 64 FF 65 >gi|28631122|gb|AAO49680.1| Eag0009 [Haemophilus influenzae] gi|301169931|emb|CBW29535.1| unnamed protein product [Haemophilus influenzae 10810] Length = 130 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 34/58 (58%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R+ + +Q+E+ + + + +++E G+S+IN+D + +A+ + + +L+ Sbjct: 6 KIRVMREINQWSQEEMAEKLSMSPNGYAKIERGQSSINLDKLQQIANVFNIDMGELIT 63 >gi|332663821|ref|YP_004446609.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332332635|gb|AEE49736.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 95 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +N RK +TQ + + + + +LE G+ +++ + L L L Sbjct: 32 LGEYLKNRRKALGITQPHLAELAQISTNTLYKLERGQGNPSLEVLNKLTEVLGLEL 87 >gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 144 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R++ T+ ++ +G +QS +SE+E G I + + + L Sbjct: 4 GKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLADFF 62 >gi|309812830|ref|ZP_07706568.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] gi|308433247|gb|EFP57141.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] Length = 411 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 M F + RK+A L+Q E+ NR + S++S LE+G+ T + + L Sbjct: 1 MSFGERLKAARKQAGLSQTELAGNRC--SVSYVSHLESGRRTPTPEMLRYFETALGLAPG 58 Query: 79 KL 80 L Sbjct: 59 SL 60 >gi|307324537|ref|ZP_07603744.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889781|gb|EFN20760.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 406 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78 + +R+ +TQ+E+ R+G I +LE + + + + +LA LDT L Sbjct: 4 KSIGDRLGELRRYRDITQEELAERSGVHVDTIRKLEQNVRQSARLGTLRMLARALDTELD 63 Query: 79 KLL 81 +LL Sbjct: 64 RLL 66 >gi|291545678|emb|CBL18786.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 166 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E ++Q E+ ++ + +S E G + N D + +L+ D + LL Sbjct: 9 KLRTERGMSQDELADKIMVTRQAVSRWENGDTVPNTDTLKLLSKEFDVSINTLL 62 >gi|293401672|ref|ZP_06645814.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304930|gb|EFE46177.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 69 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R++ L+Q E+ +Q S ETG+ ++ ++ + LA +T + L+ Sbjct: 6 KRLRDLREDHDLSQAELAKFLNISQRTYSYYETGERSVPVEILAKLAKFYNTTIEYLI 63 >gi|293380602|ref|ZP_06626657.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|290922849|gb|EFD99796.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] Length = 76 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS +E K I+I + +A L+T + Sbjct: 5 LGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALNTTTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|271502478|ref|YP_003335504.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346033|gb|ACZ78798.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 110 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68 + + +F ++ R L+QK + G A + I+ E G NI Sbjct: 2 NTSQQRHDVFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKR 61 Query: 69 LAHTLDTPL 77 LA L+ PL Sbjct: 62 LAEALNVPL 70 >gi|260563769|ref|ZP_05834255.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260153785|gb|EEW88877.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] Length = 206 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + R +R+ A TQ E+ R G Q+ IS++E + + I ++ L L Sbjct: 21 VVGQSLRALRQAAGFTQIEMAQRLGVGQAAISKIEQ-RGDVQISSLQRYVEALGASL 76 >gi|302546343|ref|ZP_07298685.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302463961|gb|EFL27054.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 270 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 F + +R+ A LTQ E+ R G++ I+ +E G+ D + L Sbjct: 14 FGRQLKLLREAAGLTQAELGARVGYSADQIASVECGRRIPKPDLIDKADEVLG 66 >gi|239904800|ref|YP_002951538.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239794663|dbj|BAH73652.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 271 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E + R R K++Q ++ + +S +ETGKS + + +A +L Sbjct: 8 PAEPRTVGDLIRFWRNTKKISQMDLALEVDVSTRHLSFVETGKSRPSRKLVFKIAESLKM 67 Query: 76 PLWK 79 P Sbjct: 68 PFRH 71 >gi|257063412|ref|YP_003143084.1| Helix-turn-helix protein [Slackia heliotrinireducens DSM 20476] gi|256791065|gb|ACV21735.1| Helix-turn-helix protein [Slackia heliotrinireducens DSM 20476] Length = 68 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 35 LTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 ++Q+++ G + S+IS++E+G+ N+ ++ +A LD + +LLK Sbjct: 1 MSQEQLGAMIGMSDHSYISKVESGEEIPNLARLLDIADALDVNVGQLLK 49 >gi|225419785|ref|ZP_03762088.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] gi|225041568|gb|EEG51814.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] Length = 264 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL-- 80 R RK ++T +++ + +++ +S+ E G+ T++++ + +A L +L Sbjct: 31 GGRIRMYRKAREMTLQQLADSIHKSRASVSKYENGEITLDVETLFEIAQVLMVSPSQLMD 90 Query: 81 LKP 83 ++P Sbjct: 91 VRP 93 >gi|197284840|ref|YP_002150712.1| phage protein [Proteus mirabilis HI4320] gi|194682327|emb|CAR42123.1| phage protein [Proteus mirabilis HI4320] Length = 85 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76 R RK AKLTQ + G A+S IS+ E+G + + + LA L+ P Sbjct: 5 RLRYARKMAKLTQTRLGTLAGMDVASARSRISQYESGLHKPSFEVVCKLAKILNLP 60 >gi|168213146|ref|ZP_02638771.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] gi|170715320|gb|EDT27502.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] Length = 117 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R E LT E+++ G ++ +S E G ID A+ + L +L Sbjct: 4 FSKRLKQLRNEKGLTLDELKDALGTTKATLSRYENGLREPKIDFANKAANYFNVSLDYIL 63 >gi|241207094|ref|YP_002978190.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860984|gb|ACS58651.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 121 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R R +++Q E+ G I + E G + ++ + +A LD + L Sbjct: 8 IVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFLDVEISAL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 26/54 (48%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E ++Q E+ ++ + +S E G + N D + +L+ D + LL Sbjct: 11 KLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLSKEFDVSINTLL 64 >gi|86742218|ref|YP_482618.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86569080|gb|ABD12889.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 103 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R++ T +E+ + + ++SE+E G+ + + + + L L Sbjct: 5 RRMLGEALRRRRQDQHRTLREVSSAARVSLGYLSEVERGQKEASSELLAAICDALGVRLA 64 Query: 79 KLLK 82 LL+ Sbjct: 65 DLLR 68 >gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 374 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|158313060|ref|YP_001505568.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158108465|gb|ABW10662.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 106 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R R++ T +E+ + + ++SE+E G+ + + + + L L Sbjct: 5 RRVIGEALRRRRQDQHRTLREVSSAARVSLGYLSEVERGQKEASSELLASICDALGVRLA 64 Query: 79 KLLK 82 LL+ Sbjct: 65 DLLR 68 >gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + +RK+ LTQK++ G + + E + T D + +A + + L Sbjct: 1 MLGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQRTPPPDILQKIADFFNVSVDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|315149981|gb|EFT93997.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0012] Length = 86 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + +R + TQ ++ + G ++ + +E K T +++ +A P+ ++ Sbjct: 21 NNLKVLRAQKNWTQADLAEKVGISRQAVISIEKYKYTPSLELAFDIAAAFKKPVTEVF 78 >gi|309775263|ref|ZP_07670272.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] gi|308916926|gb|EFP62657.1| putative transcriptional repressor [Erysipelotrichaceae bacterium 3_1_53] Length = 65 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R LTQ+E+ + + I+ +E G +I+ I + L L L Sbjct: 6 KLKAARAAMDLTQEELAVKVHVTRQTINAIEKGDYNPSINLCIAICRELQKTLNDLF 62 >gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496398|gb|EFM65972.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 128 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 +L ++ + R RK TQKE+ + Q ++ E + N+D++ L+ L Sbjct: 16 VLMKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALG 75 Query: 75 TPLWKLL 81 TP+ L Sbjct: 76 TPVSHFL 82 >gi|303238807|ref|ZP_07325339.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593686|gb|EFL63402.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 194 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N ++RKE +TQK++ + + IS+ E G ++ + L+ L + K+L Sbjct: 7 GNLICSLRKEKGMTQKQLADTMNISDKTISKWERGLGCPDVSLLPELSALLGVNIEKIL 65 >gi|294788364|ref|ZP_06753607.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294483795|gb|EFG31479.1| toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 120 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + R LTQ + + G +Q+ +S++E S A D +L Sbjct: 62 SQIAAWRIYRGLTQAQAAEKAGISQAALSQIERKNSRPQAQTREQFAQIYDCEPDQL 118 >gi|294615610|ref|ZP_06695466.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291591553|gb|EFF23206.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|323481029|gb|ADX80468.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 394 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 30/59 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R + ++ R E ++Q ++ G ++ +++++E G T + M + + L+ Sbjct: 1 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLE 59 >gi|256425817|ref|YP_003126470.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256040725|gb|ACU64269.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 250 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N + +RK+ TQ+E ++ G +S + E ++ + + +++ + L Sbjct: 3 IVCRNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAEPRTEVLELVSDMFRISIDDL 62 Query: 81 LK 82 L+ Sbjct: 63 LR 64 >gi|229166202|ref|ZP_04293962.1| Helix-turn-helix repressor protein [Bacillus cereus AH621] gi|228617300|gb|EEK74365.1| Helix-turn-helix repressor protein [Bacillus cereus AH621] Length = 71 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK+ L+Q+++ + G ++ I +E GK ++ +A T T + + Sbjct: 3 NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60 >gi|256830616|ref|YP_003159344.1| helix-turn-helix domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579792|gb|ACU90928.1| helix-turn-helix domain protein [Desulfomicrobium baculatum DSM 4028] Length = 355 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 27/63 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + + RK A L+ + + + G + +WI++ E ++ + ++ L L Sbjct: 1 MIGERLQRARKAADLSLRNLAEQVGVSHTWINKFEKDQAMPDSKTLLKLGKVLGVRSEYF 60 Query: 81 LKP 83 +P Sbjct: 61 FRP 63 >gi|172040064|ref|YP_001799778.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171851368|emb|CAQ04344.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 115 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 26/49 (53%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 A L+Q+++ RTG +QS + + G+ + + +I +A + +L Sbjct: 20 SAGLSQRDLAARTGLSQSTVHRILKGERNVKMPELIRIADATGCTVAQL 68 >gi|149918984|ref|ZP_01907469.1| hypothetical protein PPSIR1_21049 [Plesiocystis pacifica SIR-1] gi|149820137|gb|EDM79556.1| hypothetical protein PPSIR1_21049 [Plesiocystis pacifica SIR-1] Length = 75 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +N + E LT ++ + G + + + G+ ++D + ++A + T Sbjct: 5 PAYEVLASNLHRLSFEQNLTLDDVAAKVGITREHLEGICKGEIDPDLDLVSLIAEAVGTT 64 Query: 77 LWKLLK 82 +LL Sbjct: 65 APELLT 70 >gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 115 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F ++RK+ +LTQK++ + G S IS+ E I + LA L T LL Sbjct: 3 FGEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLL 62 >gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 119 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++R+ ++Q+E+ G ++ IS E G+ + + +A+ Sbjct: 2 EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60 >gi|55377330|ref|YP_135180.1| transcription regulator [Haloarcula marismortui ATCC 43049] gi|55230055|gb|AAV45474.1| transcription regulator [Haloarcula marismortui ATCC 43049] Length = 180 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + R R E LTQ E+ R +Q I+ +E G + + + L+ Sbjct: 7 QDLRERRNELGLTQSELAERADVSQPLIARIEGGDVDPRLSTLRRIVTALE 57 >gi|15900101|ref|NP_344705.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|14971630|gb|AAK74345.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 288 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +N RKE K++Q+E+ G Q IS LE+G+ T D + LA L + Sbjct: 4 LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLNALAKKLKVSM 59 >gi|148265511|ref|YP_001232217.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399011|gb|ABQ27644.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R+ KLT +++ N TGF+ + +S++E + I + +AH Sbjct: 7 GAKIKELRRAIKLTLQDVANETGFSTALLSQIENNNISPPIATLDKIAHFFGV 59 >gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 232 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + + +R E + +Q E+ N ++ ++ E+GKS N N+ LA LD P Sbjct: 4 GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVP 57 >gi|323486595|ref|ZP_08091916.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692262|ref|ZP_08106503.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399976|gb|EGA92353.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503677|gb|EGB19498.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 106 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 8/60 (13%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F +R+ ++ +++ G +I+++E GK+ +++ + L Sbjct: 7 FGRRLSQLRERKGVSARDMSLSMGQNPGYINKVENGKAMPSMEVFFYICEFLAITPSDFF 66 >gi|317485171|ref|ZP_07944053.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923706|gb|EFV44910.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 86 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R R A L Q+++ + ++ IS LE G+S N+D +I LA + L Sbjct: 17 LRRYRDAAGLPQQQLADYAEVSKGSISALEGGRSVPNVDMLITLARAFGVRPGERL 72 >gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 228 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RKE KLTQK+I ++ G + S E G + + + L L+ P Sbjct: 5 EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVP 57 >gi|296120081|ref|ZP_06838635.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295967235|gb|EFG80506.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 440 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 25/53 (47%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +RK LTQ E+ + + S++++LE + + + +I L+ + Sbjct: 7 GARIHALRKTYGLTQVEMAKQLDLSTSYLNQLENDQRPLTVTVLIQLSEAFNV 59 >gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 70 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R +Q E+ R G + I +E G + +I + LA LD + +L Sbjct: 1 MLRNRVKELRARHGFSQTELAQRVGVTRQTIGFIEKGDFSPSIALSLRLAKHLDVRVDEL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|229164001|ref|ZP_04291939.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] gi|228619472|gb|EEK76360.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] Length = 73 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R + +++Q ++ G ++ IS +E G +I + +AH + P+ ++ Sbjct: 5 NRVRELRAKHRISQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIF 62 >gi|225855439|ref|YP_002736951.1| transcriptional activator [Streptococcus pneumoniae JJA] gi|225723117|gb|ACO18970.1| transcriptional activator [Streptococcus pneumoniae JJA] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|297204896|ref|ZP_06922293.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197711669|gb|EDY55703.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 135 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 29/69 (42%) Query: 8 EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67 P + A E + R ++Q+ + + TG +S IS++E G+ ++ + Sbjct: 4 SPSDARARDPELTQLGERLKRTRDYLNMSQQFVSDNTGIPRSAISDIERGERRVDSLELK 63 Query: 68 ILAHTLDTP 76 LA P Sbjct: 64 KLARLYRQP 72 >gi|167917954|ref|ZP_02505045.1| helix-turn-helix protein [Burkholderia pseudomallei BCC215] Length = 107 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75 R +RKE LT +++ G ++S++ ELE +S + + + LA L Sbjct: 5 LGAKLRELRKEKGLTLEKLAELAGMSKSYVWELENRESQRPSAEKLTKLADVLGV 59 >gi|15901770|ref|NP_346374.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|15903805|ref|NP_359355.1| transcriptional activator [Streptococcus pneumoniae R6] gi|116517204|ref|YP_817168.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|168484245|ref|ZP_02709197.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|221232674|ref|YP_002511828.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|14973451|gb|AAK76014.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] gi|15459444|gb|AAL00566.1| Transcriptional activator [Streptococcus pneumoniae R6] gi|116077780|gb|ABJ55500.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|172042485|gb|EDT50531.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|220675136|emb|CAR69719.1| putative transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|332199372|gb|EGJ13449.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|332527576|ref|ZP_08403623.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111979|gb|EGJ11956.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 277 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQS-WISELETGKSTINIDNMIILAHTLDTP 76 E+ + R++A L+Q E +R G++Q +S +E+G+ +D ++ T Sbjct: 47 EKRAWGRRLAEAREDAGLSQTEAAHRLGYSQQVQLSLMESGQRMPPLDVLLACTQLYGTT 106 Query: 77 LWKL 80 + L Sbjct: 107 MDFL 110 >gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 205 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 205 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 32/58 (55%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK ++Q+ + ++ G ++ +S+ E+ +S ++D +I ++ + LLK Sbjct: 6 RIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63 >gi|317407455|gb|EFV87415.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 202 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 + + R RK K+T +++ +G A S +S+ E G+ ++ + LA L + Sbjct: 3 KEVMGARLRAERKARKMTLQDLSQASGIAVSTLSKAELGQIALSYEKFAALARALGIDMT 62 Query: 79 KLL 81 ++ Sbjct: 63 RMF 65 >gi|315038028|ref|YP_004031596.1| HTH-type transcriptional regulator yqaF [Lactobacillus amylovorus GRL 1112] gi|325956480|ref|YP_004291892.1| HTH-type transcriptional regulator yqaF [Lactobacillus acidophilus 30SC] gi|312276161|gb|ADQ58801.1| HTH-type transcriptional regulator yqaF [Lactobacillus amylovorus GRL 1112] gi|325333045|gb|ADZ06953.1| HTH-type transcriptional regulator yqaF [Lactobacillus acidophilus 30SC] gi|327183308|gb|AEA31755.1| HTH-type transcriptional regulator yqaF [Lactobacillus amylovorus GRL 1118] Length = 78 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R R A LTQ E+ ++S+ S++E G I+ D ++ L K Sbjct: 4 GKSLRETRLAAGLTQTEMAAGVA-SESFYSKVERGIHNIDADTLVKLLKARKINPVGFFK 62 >gi|310825514|ref|YP_003957872.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|309398586|gb|ADO76045.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 131 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I RN R A LTQ+++ R G A +E G+ ++N+ L L + Sbjct: 8 ILGTAARNARVRAGLTQEDVAERIGMASEVYGRMERGQMLPRVENLRRLCLVLKVSPHEF 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321] gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321] Length = 149 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R+E KL+QKE+ G + E G+S I + LA + LL Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAKQLADYFGVSVGYLL 59 >gi|304405777|ref|ZP_07387435.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304345020|gb|EFM10856.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 71 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 E R RK TQ+++ R + + + LE G + + +A TL Sbjct: 2 ENDQLAQRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGTRKPDPKLLANIAETLGIDY 61 Query: 78 WKLLK 82 +L + Sbjct: 62 DELTQ 66 >gi|264679065|ref|YP_003278972.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209578|gb|ACY33676.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 98 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK A++TQ ++ R G ++ + ETG + +A L+ L Sbjct: 9 LAQARKAARITQADLAERAGLSRMAVQRTETGDVDPRFSTLQEMARVLNMEL 60 >gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens DSM 30120] Length = 236 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 1 MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60 M ++ + +DA+ R + IF +KE L+Q+ + + G QS +++L G + Sbjct: 1 MKKKPITDEQKADAV-RLKAIFEAK----KKELGLSQESLGDAIGMGQSAVAQLLNGVNA 55 Query: 61 INIDNMIILAHTLDTPLWK 79 IN++N + LA L+ + Sbjct: 56 INVENAVKLAEALEVSVDD 74 >gi|167770470|ref|ZP_02442523.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] gi|167667065|gb|EDS11195.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] Length = 71 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MIF + +R +Q I G + E G S + +I LA D L Sbjct: 1 MIFQKRLKELRNAKGTSQIAIAAALGITDRGYRKYEAGDSEPTLSVIIALADYFDVSLDY 60 Query: 80 L 80 L Sbjct: 61 L 61 >gi|218904463|ref|YP_002452297.1| DNA-binding protein [Bacillus cereus AH820] gi|229122857|ref|ZP_04252066.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] gi|218535175|gb|ACK87573.1| DNA-binding protein [Bacillus cereus AH820] gi|228660721|gb|EEL16352.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] Length = 374 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|154504997|ref|ZP_02041735.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] gi|153794880|gb|EDN77300.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] Length = 147 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 30/56 (53%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R++ LTQ+++ R + +S ETG++ N D + +L+ + + LL Sbjct: 7 LKKLREKNSLTQEQMAKRVMVTRQAVSRWETGETQPNTDTLKLLSQEFEVSVNTLL 62 >gi|111225926|ref|YP_716720.1| hypothetical protein FRAAL6593 [Frankia alni ACN14a] gi|111153458|emb|CAJ65216.1| hypothetical protein FRAAL6593 [Frankia alni ACN14a] Length = 375 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 D R+ +R +T + + + G +QS IS++E G N ++ +A Sbjct: 25 PDGTPPARL--GVELAQLRHARAMTGQALASSVGISQSTISKIENGLLRPNPADVERIAR 82 Query: 72 TLDTPLWKLLK 82 TL P +L++ Sbjct: 83 TLQAPP-ELVR 92 >gi|37912891|gb|AAR05227.1| predicted transcriptional regulators [uncultured marine proteobacterium ANT32C12] Length = 65 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 N + +R + +L+Q + ++ ++ +E GK ++ I L H + PL K+ Sbjct: 3 NRLKELRADRELSQSALAEILSVSRQTVNSIENGKFDPSLTLAIKLTHYFEMPLDKIFT 61 >gi|20090666|ref|NP_616741.1| hypothetical protein MA1815 [Methanosarcina acetivorans C2A] gi|19915714|gb|AAM05221.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 187 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + + R E LTQ ++ R G +Q I+ +E+G + + + + Sbjct: 7 EDLKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVDPRLSTVRKILDAFE 57 >gi|28377773|ref|NP_784665.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270606|emb|CAD63512.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 183 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 32/63 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 +++ + R++ + +Q+ + R ++ IS+ E GKS +++ ++ L+ Sbjct: 2 KIVIGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFSVSTD 61 Query: 79 KLL 81 +LL Sbjct: 62 ELL 64 >gi|15612659|ref|NP_240962.1| hypothetical protein BH0096 [Bacillus halodurans C-125] gi|10172708|dbj|BAB03815.1| BH0096 [Bacillus halodurans C-125] Length = 73 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + R RK TQ+ G + S + E+E G T N + + L+ +LL Sbjct: 6 WGQRIRAFRKLKGYTQERFAQAIGVSVSVLGEVERGTRTPNRQLIERVVSVLNISEDELL 65 >gi|89895073|ref|YP_518560.1| hypothetical protein DSY2327 [Desulfitobacterium hafniense Y51] gi|219669485|ref|YP_002459920.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89334521|dbj|BAE84116.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539745|gb|ACL21484.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 121 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R++ L Q++I G Q S E G+ + +I LA D LL Sbjct: 8 IRGLREDKDLRQRDIAEVIGTTQQHYSRCEQGECDLQTRAIIKLADFYDVSTDYLL 63 >gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 374 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+E+ G ++ +S+ ETG+S +I + +LA + + +L+ Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65 >gi|327401729|ref|YP_004342568.1| XRE family transcriptional regulator [Archaeoglobus veneficus SNP6] gi|327317237|gb|AEA47853.1| transcriptional regulator, XRE family [Archaeoglobus veneficus SNP6] Length = 68 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + R LTQ+E+ + G + I +E GK +++ +A + + Sbjct: 3 NKLKVYRAIHDLTQEELAKKLGVTRQTIIAIEKGKYDPSLELAFKIARFFKVKIEDIF 60 >gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RKE +Q+ + + ++ IS+ E+G++ ++ ++ L+ LL Sbjct: 4 LADKLFELRKEKGWSQERLAEQISVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 63 >gi|303238242|ref|ZP_07324778.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302594288|gb|EFL64000.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 27/58 (46%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +++R+++ TQ+ + ++ ++ I LE GK +I +A + + Sbjct: 3 NKIKDLREQSGFTQQYLADKVNVSRQTIISLENGKYNPSIFLAYKIAKVFKMTIEDIF 60 >gi|257483233|ref|ZP_05637274.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 96 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 + +R+ LTQK+ + ++S+LE GK T ++ + + LD Sbjct: 5 EAVGLAVQTLRRHKGLTQKD--FLGAVSTQYLSDLECGKRTPSLVVLARICERLDV 58 >gi|256832269|ref|YP_003160996.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] gi|256685800|gb|ACV08693.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM 20603] Length = 99 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R+ T +E+ + + ++SE+E G+ + + + + LDTPL Sbjct: 5 RREIGDVLRSARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLGSICDALDTPLS 64 Query: 79 KLLK 82 +L+ Sbjct: 65 LILR 68 >gi|238922410|ref|YP_002935924.1| hypothetical protein EUBELI_20646 [Eubacterium eligens ATCC 27750] gi|238874082|gb|ACR73790.1| Hypothetical protein EUBELI_20646 [Eubacterium eligens ATCC 27750] Length = 88 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M NN R I+++ + Q ++ G++ + +E G ST + + M+ ++ + + Sbjct: 23 MAVTNNIREIQEQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 82 Query: 80 LL 81 + Sbjct: 83 VF 84 >gi|212691976|ref|ZP_03300104.1| hypothetical protein BACDOR_01471 [Bacteroides dorei DSM 17855] gi|212665368|gb|EEB25940.1| hypothetical protein BACDOR_01471 [Bacteroides dorei DSM 17855] Length = 128 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 7/44 (15%), Positives = 23/44 (52%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 E +TQ+ + + Q ++S++ G+ ++++ + + + L Sbjct: 76 ELGMTQRVLAEKMNCTQQYVSKVLKGRENLSLETLCKIENALGI 119 >gi|295839125|ref|ZP_06826058.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197695573|gb|EDY42506.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 280 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 +S+ R+ R +R EA L K + + +S +S LE G+ T + ++ A Sbjct: 1 MSNDFQSARVALGARLRELRTEAGLDGKSLAELLAWQRSKVSRLENGRQTASRPDLEAWA 60 Query: 71 HTLDTP 76 + P Sbjct: 61 QAVGQP 66 >gi|163841767|ref|YP_001626172.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162955243|gb|ABY24758.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 79 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N+ R +R +TQ E+ R G + I +E GK + +++ +A L L + Sbjct: 9 NSIRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKYSPSLEVAFQIAGILQVRLEDVF 67 >gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +RK L Q ++ N G + + + ETG+ ++ID + +A LDT Sbjct: 10 GQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHLDTTP 64 >gi|158522991|ref|YP_001530861.1| helix-turn-helix domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511817|gb|ABW68784.1| helix-turn-helix domain protein [Desulfococcus oleovorans Hxd3] Length = 387 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R +R++ T + G A+ + +E G + + + L+ L + L Sbjct: 12 GRNIRKLRRQRGWTISRLAGEIGMAEIPLGRIERGGNAPSAAVIFQLSRALGVSVDTLF 70 >gi|322392499|ref|ZP_08065959.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144491|gb|EFX39892.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 99 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ + N + +R L Q E+ G ++ IS LE + T +I + +A P+ Sbjct: 30 KKDMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTPSIVIALKIAQIFHEPV 89 Query: 78 WKLLK 82 + + Sbjct: 90 ESVFR 94 >gi|331655815|ref|ZP_08356804.1| putative helix-turn-helix-containing protein [Escherichia coli M718] gi|331046589|gb|EGI18678.1| putative helix-turn-helix-containing protein [Escherichia coli M718] Length = 151 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I + R+ R++ +TQ +I + G + ++E GKS+++++NM+ ++ L Sbjct: 8 ILAFHIRDFREKYGVTQSDIASGLGITSAGWGKIENGKSSLSVENMMKFCKIINIDATIL 67 Query: 81 L 81 L Sbjct: 68 L 68 >gi|290956650|ref|YP_003487832.1| hypothetical protein SCAB_21541 [Streptomyces scabiei 87.22] gi|260646176|emb|CBG69269.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 465 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80 F R IR L Q ++ TG +Q+++S LE G + ID +I L P + Sbjct: 20 FGQASRLIRLRGSLRQGDMAQLTGLSQAFLSMLEAGTRRLTNIDKIIEFLTGLGVPAELV 79 Query: 81 LKP 83 P Sbjct: 80 PLP 82 >gi|260584837|ref|ZP_05852582.1| rgg/GadR/MutR family transcriptional activator [Granulicatella elegans ATCC 700633] gi|260157494|gb|EEW92565.1| rgg/GadR/MutR family transcriptional activator [Granulicatella elegans ATCC 700633] Length = 283 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + IRKE LTQKE+ +++++S+ E G+S I + + L L+ L + Sbjct: 4 GEFIKKIRKEKHLTQKELAEGI-LSKNFLSKFERGESKITSEIFLNLLERLNVSLDE 59 >gi|256617058|ref|ZP_05473904.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596585|gb|EEU15761.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 87 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +N RKE L+Q E+ + Q +S +TG++ M +L+ L P+ +L Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78 >gi|225017731|ref|ZP_03706923.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum DSM 5476] gi|224949524|gb|EEG30733.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum DSM 5476] Length = 70 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 MI N+ + +R L Q E+ +R ++ IS +E G + +I + LA L+ Sbjct: 1 MILKNHLKELRARHGLNQSELADRADVSRQTISLIERGNYSPSITLALTLARILEV 56 >gi|219666840|ref|YP_002457275.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537100|gb|ACL18839.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 622 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 2 PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 P R S L + R KLTQ + G AQ+ IS+LE+G+ Sbjct: 551 PGRPPKSERTSLCSL------GEQLKKERLRKKLTQMQAAEDIGIAQTTISKLESGRRVP 604 Query: 62 NIDNMIILAHTLDT 75 + + L Sbjct: 605 DFKTARKIQQWLKI 618 >gi|210611542|ref|ZP_03288946.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] gi|210151943|gb|EEA82950.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] Length = 194 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 32/60 (53%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R++ K++Q+E+ + ++ IS ET KS ++ ++I L++ + L +K Sbjct: 4 GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDNFIK 63 >gi|209551664|ref|YP_002283581.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537420|gb|ACI57355.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 121 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R R +++Q E+ G I + E G + ++ + +A LD + L Sbjct: 8 IVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISAL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|154484771|ref|ZP_02027219.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC 27560] gi|149734619|gb|EDM50536.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC 27560] Length = 70 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + I+ TQK + + S IS +E GK I++ ++ + + L T + +LK Sbjct: 10 GKKLKEIQTHKGFTQKFVASSVKVNTSHISNIENGKVKISLTTLVNVCNVLGTTVDYVLK 69 >gi|29376415|ref|NP_815569.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519230|ref|ZP_03949279.1| replication initiation protein [Enterococcus faecalis TX0104] gi|229545527|ref|ZP_04434252.1| replication initiation protein [Enterococcus faecalis TX1322] gi|255975566|ref|ZP_05426152.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256619367|ref|ZP_05476213.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256853409|ref|ZP_05558779.1| transcriptional regulator [Enterococcus faecalis T8] gi|256961616|ref|ZP_05565787.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256964832|ref|ZP_05569003.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257090178|ref|ZP_05584539.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|293384440|ref|ZP_06630320.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293389181|ref|ZP_06633645.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|307272916|ref|ZP_07554163.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307275669|ref|ZP_07556810.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307295992|ref|ZP_07575824.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312902671|ref|ZP_07761875.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908394|ref|ZP_07767357.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312910535|ref|ZP_07769377.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29343878|gb|AAO81639.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227073317|gb|EEI11280.1| replication initiation protein [Enterococcus faecalis TX0104] gi|229309443|gb|EEN75430.1| replication initiation protein [Enterococcus faecalis TX1322] gi|255968438|gb|EET99060.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256598894|gb|EEU18070.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256711868|gb|EEU26906.1| transcriptional regulator [Enterococcus faecalis T8] gi|256952112|gb|EEU68744.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256955328|gb|EEU71960.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256998990|gb|EEU85510.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|291078223|gb|EFE15587.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081486|gb|EFE18449.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|306496323|gb|EFM65902.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306507774|gb|EFM76903.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306510530|gb|EFM79553.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|310625614|gb|EFQ08897.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310633725|gb|EFQ17008.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311289083|gb|EFQ67639.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|315028935|gb|EFT40867.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315033315|gb|EFT45247.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315143537|gb|EFT87553.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315161496|gb|EFU05513.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315576934|gb|EFU89125.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 394 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 30/59 (50%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 + +R + ++ R E ++Q ++ G ++ +++++E G T + M + + L+ Sbjct: 1 MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLE 59 >gi|332076616|gb|EGI87078.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 288 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +N RKE K++Q+E+ G Q IS LE+G+ T D + LA L + Sbjct: 4 LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSM 59 >gi|330881145|gb|EGH15294.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 125 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E LT + + G +S++E + ++D + L+ L T +L Sbjct: 10 GAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSEL 67 >gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 96 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +RK +T KE+ R + +IS +E + +++ + + L + + Sbjct: 4 GNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTKLSLKTLAHICDVLGVTISEFF 62 >gi|325925271|ref|ZP_08186675.1| Helix-turn-helix protein [Xanthomonas perforans 91-118] gi|325544317|gb|EGD15696.1| Helix-turn-helix protein [Xanthomonas perforans 91-118] Length = 78 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 28/50 (56%) Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ +TQ ++ N G QS++S+ E+G+ +++ + L L L+ + Sbjct: 21 QSDMTQTDLANALGKPQSYVSKYESGERRLDLIELSDLCSVLGISLYDFV 70 >gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 373 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 31/52 (59%) Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RKE +TQ+++ N G +++ +S+ E+G S +I + LA + + +LL Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDILFLPELATYFNISVDELL 65 >gi|315640497|ref|ZP_07895605.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483701|gb|EFU74189.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 194 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + R+ +Q+ + + + IS+ E K+ +I N+I L+ D L +L+ Sbjct: 3 FSKQLKKYRELNGYSQEILAEKIYVTRQTISKWENDKTYPDIHNLIALSVLFDITLDELV 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|295398491|ref|ZP_06808526.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] gi|294973271|gb|EFG49063.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] Length = 92 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 28/55 (50%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + NIRK L+Q+E G QS I +E+ + ++D ++ +A+ + L Sbjct: 33 ADQIYNIRKNLGLSQREFAKLVGKPQSTIGRIESREVNASLDTIVSIANATNKKL 87 >gi|295699364|ref|YP_003607257.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438577|gb|ADG17746.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 84 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R++A TQ E R G +QS IS LET S + + ++ L L Sbjct: 11 LAQLLAASRRQAGFTQTEAAARVGVSQSRISALETDASGLTLIQLLALCGAYGLQL 66 >gi|227357914|ref|ZP_03842260.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227161887|gb|EEI46911.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 94 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R+ RK LT +++ + +Q +S ET +S I+ + +++++ LD + LL Sbjct: 21 LGKEIRSKRKAIGLTGEDLAKKLNVSQQQVSRYETAESKISFEKLLLISDVLDLNIQYLL 80 Query: 82 K 82 K Sbjct: 81 K 81 >gi|168701755|ref|ZP_02734032.1| hypothetical protein GobsU_19681 [Gemmata obscuriglobus UQM 2246] Length = 124 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78 + R+ A L+ ++ R+G ++ + LE G +D + A + L Sbjct: 61 LKKAREAAGLSLADVAERSGIDKAALGRLENGVHDNPTVDTLARYAAAIGKRLV 114 >gi|148988948|ref|ZP_01820348.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae SP6-BS73] gi|147925445|gb|EDK76522.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus pneumoniae SP6-BS73] Length = 70 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 34/59 (57%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+ ++ R E ++QK++ +G +Q I+ +ETG+S++ +D ++ + +L L Sbjct: 2 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTL 60 >gi|332638410|ref|ZP_08417273.1| helix-turn-helix domain-containing protein [Weissella cibaria KACC 11862] Length = 182 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +R++ +LT +E+ TG + + ++ +E ++ +ID + ++ L P+ Sbjct: 4 EIVGTRLLTLRQQRQLTLQEVSTLTGVSTASLNNIERHTTSPSIDTLWKISSGLAVPI 61 >gi|326390094|ref|ZP_08211656.1| Tetratricopeptide TPR_2 repeat-containing protein [Thermoanaerobacter ethanolicus JW 200] gi|325993959|gb|EGD52389.1| Tetratricopeptide TPR_2 repeat-containing protein [Thermoanaerobacter ethanolicus JW 200] Length = 436 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L Q ++ F++ +IS +E GK + ++ + +A L+ P+ L Sbjct: 6 LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64 >gi|312135656|ref|YP_004002994.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311775707|gb|ADQ05194.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 73 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 +R++ LTQ ++ G + +S++E G + LA+ P+ +L P Sbjct: 3 KLEFLRRQRGLTQTKLGFAIGVNPNLLSQIERGWRKPYPKLLQGLANYFGVPVEELANP 61 >gi|307264993|ref|ZP_07546554.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919978|gb|EFN50191.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 436 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L Q ++ F++ +IS +E GK + ++ + +A L+ P+ L Sbjct: 6 LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64 >gi|296156060|ref|ZP_06838899.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893566|gb|EFG73345.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70 L D +R I R +R E + ++ + +++ +S LE + + L Sbjct: 5 LPDDNAIDRRI-AQRLRALRAERNWSLDDLARLSSVSRATLSRLENAAVSPTASVLGKLC 63 Query: 71 HTLDTPLWKLL 81 P+ +L+ Sbjct: 64 VAYGLPISRLM 74 >gi|288906350|ref|YP_003431572.1| transcriptional regulator PlcR family [Streptococcus gallolyticus UCN34] gi|306832393|ref|ZP_07465546.1| transcriptional regulator PlcR family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979362|ref|YP_004289078.1| transcriptional regulator PlcR-like [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733076|emb|CBI14657.1| putative transcriptional regulator PlcR family [Streptococcus gallolyticus UCN34] gi|304425433|gb|EFM28552.1| transcriptional regulator PlcR family protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179290|emb|CBZ49334.1| transcriptional regulator PlcR-like [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 286 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 26 FRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + RKE LTQKE+ G AQ+ IS++E ++T ++D L LD + Sbjct: 9 IKTKRKEKGLTQKELAE--GICAQAVISKIEKNETTPSVDLFFKLVKRLDIDM 59 >gi|254421718|ref|ZP_05035436.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] gi|196189207|gb|EDX84171.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335] Length = 270 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 30/58 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 F + R + +Q ++ + +Q IS LE+G+S + + ++ L+ LD PL + Sbjct: 9 FGQLLKQWRSQRNFSQLDLSITSNVSQRHISFLESGRSKPSREMVLTLSTVLDIPLRQ 66 >gi|126735122|ref|ZP_01750868.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126715677|gb|EBA12542.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 466 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R +R +LTQK R G + +++++E ++ ++ LA Sbjct: 3 VQKLYAGAKLRELRGRLELTQKAFAERLGVSLPYLNQMENNNRPVSTAVVLGLAQEFGFD 62 Query: 77 LWKL 80 + +L Sbjct: 63 VTEL 66 >gi|119026382|ref|YP_910227.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765966|dbj|BAF40145.1| putative transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 164 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 23/33 (69%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61 +R + +TQ+++ + G +QS+IS++E G+ + Sbjct: 30 MRVQRGMTQEQLADEMGVSQSYISQIENGRKKL 62 >gi|167039343|ref|YP_001662328.1| TPR repeat-containing protein [Thermoanaerobacter sp. X514] gi|256752343|ref|ZP_05493204.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913983|ref|ZP_07131300.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp. X561] gi|307725334|ref|YP_003905085.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853583|gb|ABY91992.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp. X514] gi|256748754|gb|EEU61797.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter ethanolicus CCSD1] gi|300890668|gb|EFK85813.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp. X561] gi|307582395|gb|ADN55794.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 436 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L Q ++ F++ +IS +E GK + ++ + +A L+ P+ L Sbjct: 6 LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64 >gi|167036674|ref|YP_001664252.1| TPR repeat-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115101|ref|YP_004185260.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855508|gb|ABY93916.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928192|gb|ADV78877.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 435 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R RK L Q ++ F++ +IS +E GK + ++ + +A L+ P+ L Sbjct: 6 LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64 >gi|329851805|ref|ZP_08266486.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328839654|gb|EGF89227.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R +R E LTQ ++ + G ++ + LET K ++D ++ D P+ + + Sbjct: 3 QYLRELRTEMGLTQADLAAKLGVSRQAVIALETDKHIPSLDLAYKISAVFDRPVESIFE 61 >gi|319900779|ref|YP_004160507.1| transcriptional regulator [Bacteroides helcogenes P 36-108] gi|319415810|gb|ADV42921.1| transcriptional regulator [Bacteroides helcogenes P 36-108] Length = 191 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +++R+ ++ +++ R+G A + +E ++ +I +A L L Sbjct: 5 KIVGEKIKSLRESQSISMEDLAQRSGLAIEQVERIENNIDLPSLAPLIKIARVLGVRL 62 >gi|312134839|ref|YP_004002177.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774890|gb|ADQ04377.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 84 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 26/57 (45%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + IRK L QKE+ + + + E GK I ID I +A L+ + ++ Sbjct: 2 RLKEIRKMKNLKQKEVAEKLQISPQRYCQYENGKRKIPIDIAIKIAQILNMSMDEIF 58 >gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 146 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R + L+Q+E+ + + +S E G + N + + +L+ + + +L Sbjct: 7 IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSVLFEVSINTIL 62 >gi|288559687|ref|YP_003423173.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288542397|gb|ADC46281.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 67 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 NN + R +TQKE+ + G ++ I +E K+ +++ +AH D + + Sbjct: 3 NNLKIYRAIENITQKELADELGVSRQTIVLIENNKNDPSLELAFKIAHKFDVKIEDIF 60 >gi|255007620|ref|ZP_05279746.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12] Length = 93 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R RK + Q+ + + + + I+++E G+ IN + + L L Sbjct: 25 KQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLEL 82 >gi|255035160|ref|YP_003085781.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947916|gb|ACT92616.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 189 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++ + +R+ L+Q+ + + +E G + + + +LA LD + Sbjct: 3 KLSISEQIKTLRRAKGLSQENLAESARINLRTLQRIEAGDTIPRGETLRLLAQVLDVRVE 62 Query: 79 KL 80 L Sbjct: 63 SL 64 >gi|225374973|ref|ZP_03752194.1| hypothetical protein ROSEINA2194_00596 [Roseburia inulinivorans DSM 16841] gi|225213163|gb|EEG95517.1| hypothetical protein ROSEINA2194_00596 [Roseburia inulinivorans DSM 16841] Length = 123 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 MI I ++ ++Q E+ RTG A S IS+ + K+ D ++ + LD + Sbjct: 1 MIISERIFYIMEQKNMSQLELSRRTGIATSNISDWKKKKTNPKADCLLSICDALDITPEQ 60 Query: 80 LLK 82 LL Sbjct: 61 LLT 63 >gi|218682257|ref|ZP_03529858.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 119 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I N R R +++Q E+ G I + E G + ++ + +A LD + L Sbjct: 8 IVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFLDVEISAL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|167770512|ref|ZP_02442565.1| hypothetical protein ANACOL_01857 [Anaerotruncus colihominis DSM 17241] gi|167667107|gb|EDS11237.1| hypothetical protein ANACOL_01857 [Anaerotruncus colihominis DSM 17241] Length = 89 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R+I N R ++Q+E+ R + +++E + N+ + L+ Sbjct: 7 RVILACNLLEYRTINDISQEELAFRIKTSVKSYAKIERAEVHTNLKILDRLSQATGISTA 66 Query: 79 KLLKP 83 +LL P Sbjct: 67 QLLTP 71 >gi|148998484|ref|ZP_01825925.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576644|ref|ZP_02722510.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068564|ref|YP_003877530.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755677|gb|EDK62723.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577638|gb|EDT98166.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410101|gb|ADM85528.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|152967978|ref|YP_001363762.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362495|gb|ABS05498.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 326 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 9/78 (11%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TI 61 RR RD +D L R+ R+ A L ++E+ + G + ++ LE G++ Sbjct: 37 RRWRDRLSPADVGLPARVR--------RRAAGLRREELADLAGLSVDYVVRLEQGRATNP 88 Query: 62 NIDNMIILAHTLDTPLWK 79 + + LA L + Sbjct: 89 SAQVVATLARALQLSTVE 106 >gi|110632671|ref|YP_672879.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283655|gb|ABG61714.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 474 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 +++ R IR LTQ + G + S+++ +E + + ++ L Sbjct: 4 VQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVD 63 Query: 77 LWKL 80 +L Sbjct: 64 PDEL 67 >gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 120 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 +F + +R EA LTQ ++ + G +Q S E G+ D +A + L Sbjct: 1 MFSERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTPDKYPKIAEFYNVSTDYL 60 Query: 81 L 81 L Sbjct: 61 L 61 >gi|322392306|ref|ZP_08065767.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144841|gb|EFX40241.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 68 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 30/50 (60%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 R+E ++QK++ +G +Q I+ +ETGK++ +D ++ + +L L Sbjct: 9 EARREQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 58 >gi|309807064|ref|ZP_07701044.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325911652|ref|ZP_08174060.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166560|gb|EFO68759.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325476638|gb|EGC79796.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 227 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 ++IF RK+ LT +E+ + G A S IS +G+ I+ + +A+ +T ++ Sbjct: 5 KIIFGQMIDYFRKQNNLTMEELGQKLGKATSSISRWVSGERYPKIEEIEQIANFFNTDIY 64 Query: 79 KLL 81 L+ Sbjct: 65 TLI 67 >gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 207 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M F+ R E +TQ E+ N G +Q I +E+G++ N++ LA L Sbjct: 1 MSLAARFKARRIELGMTQTEVANVAGVSQQSIESIESGRTRKP-RNVLELAKALKCSPDW 59 Query: 80 LL 81 LL Sbjct: 60 LL 61 >gi|255006786|ref|ZP_05145387.2| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] Length = 238 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 4 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57 >gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016] gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 108 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK K++Q ++ A + I+++E G + +ID +I + L + Sbjct: 9 GNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSEFF 67 >gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] Length = 384 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + RKE +TQ+++ + G +++ +S+ E+G S +I + +A + + +LL Sbjct: 10 GNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPEIATYFNISVDELL 68 >gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] Length = 95 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IR + LT E+ G +Q IS E G T+++ + + ++ + Sbjct: 17 GEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERGYHTLSLSDFTFILSVMNVSFLDFI 75 >gi|160944429|ref|ZP_02091657.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium prausnitzii M21/2] gi|166033500|ref|ZP_02236329.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC 27755] gi|260437651|ref|ZP_05791467.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|261367918|ref|ZP_05980801.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|158444211|gb|EDP21215.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium prausnitzii M21/2] gi|166026685|gb|EDR45442.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC 27755] gi|282570731|gb|EFB76266.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|292810006|gb|EFF69211.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|295104413|emb|CBL01957.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N +RK+ + Q+++ N ++ I LE G+ +I +A + + ++ Sbjct: 3 NRLEELRKQRGIKQEDLANALEVSRQTIGSLENGRYNPSIQLAFKIARYFNMSIEEIF 60 >gi|148643210|ref|YP_001273723.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|222445441|ref|ZP_03607956.1| hypothetical protein METSMIALI_01079 [Methanobrevibacter smithii DSM 2375] gi|261349997|ref|ZP_05975414.1| putative transcriptional regulator [Methanobrevibacter smithii DSM 2374] gi|148552227|gb|ABQ87355.1| predicted transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|222435006|gb|EEE42171.1| hypothetical protein METSMIALI_01079 [Methanobrevibacter smithii DSM 2375] gi|288860783|gb|EFC93081.1| putative transcriptional regulator [Methanobrevibacter smithii DSM 2374] Length = 67 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R E L+Q+++ + TG + I+ LE + ++ + LD Sbjct: 4 KIKEFRNEKGLSQQKLADLTGVTRQTINALENARYNPSLLLAFRITKILDKE 55 >gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185] gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185] Length = 263 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + R+ RKE KLTQK + S I++ E G ST N+I L+ L+ Sbjct: 25 EMIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEW 84 Query: 80 LL 81 LL Sbjct: 85 LL 86 >gi|109392229|ref|YP_655039.1| gp43 [Mycobacterium phage Llij] gi|88910330|gb|ABD58259.1| gp43 [Mycobacterium phage Llij] Length = 70 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 R IR+ + E+ +G + ++S+LE G N LA L P+ L +P Sbjct: 3 QELRVIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 62 >gi|76787698|ref|YP_330569.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76562755|gb|ABA45339.1| DNA-binding protein [Streptococcus agalactiae A909] Length = 358 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R + +TQ+ + + ++ IS+ E ++ +ID +I++A+ D L L Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|238797081|ref|ZP_04640584.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC 43969] gi|238719126|gb|EEQ10939.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC 43969] Length = 109 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68 ++ + R IF ++ R L+QK + G A + I+ E G N+ Sbjct: 2 NSEQQNRHIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTAKH 61 Query: 69 LAHTLDTPL 77 LA L+ PL Sbjct: 62 LAEALNIPL 70 >gi|77407989|ref|ZP_00784738.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77173351|gb|EAO76471.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 358 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R + +TQ+ + + ++ IS+ E ++ +ID +I++A+ D L L Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|25012032|ref|NP_736427.1| hypothetical protein gbs1994 [Streptococcus agalactiae NEM316] gi|77413860|ref|ZP_00790038.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413575|emb|CAD47653.1| Unknown [Streptococcus agalactiae NEM316] gi|77160100|gb|EAO71233.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 358 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R + +TQ+ + + ++ IS+ E ++ +ID +I++A+ D L L Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|22538172|ref|NP_689023.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76798585|ref|ZP_00780814.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|22535081|gb|AAN00896.1|AE014283_15 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76586050|gb|EAO62579.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] Length = 358 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N R + +TQ+ + + ++ IS+ E ++ +ID +I++A+ D L L Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 81 L 81 + Sbjct: 61 V 61 >gi|327540144|gb|EGF26738.1| transcriptional regulator [Rhodopirellula baltica WH47] Length = 374 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPL 77 M F + R+ A +TQK++ T S I ELE+ + + M+ +A + Sbjct: 1 MSFGTRLKWAREAAGMTQKQLSEATDIGISTICELESDGRERGPSALQMVKIADAVRRRP 60 Query: 78 WKLLKP 83 +P Sbjct: 61 DFFFEP 66 >gi|307709969|ref|ZP_07646416.1| transcriptional regulator [Streptococcus mitis SK564] gi|307619340|gb|EFN98469.1| transcriptional regulator [Streptococcus mitis SK564] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|268319338|ref|YP_003292994.1| hypothetical protein FI9785_855 [Lactobacillus johnsonii FI9785] gi|262397713|emb|CAX66727.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 108 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80 + R+ ++TQ+++ + + ++IS+++ G I+I + +A L T + L Sbjct: 12 LGAAIKKGRRSLRMTQEDLAEFSSLSVNFISKIKRTGNQNISIQKLDAIAKALQTSVITL 71 Query: 81 L 81 + Sbjct: 72 I 72 >gi|258651247|ref|YP_003200403.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554472|gb|ACV77414.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 309 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 +RER + R R+ A+L +E+ TG++ S +S +E G+ I ++ L Sbjct: 4 DPPSVRERRL-AAELRRARQAAQLNGREVAALTGWSTSKVSRIENGRIGIGAADLDRLLE 62 Query: 72 TLDTPL 77 P Sbjct: 63 LYQVPP 68 >gi|229073535|ref|ZP_04206660.1| Transcriptional regulator [Bacillus cereus F65185] gi|229194159|ref|ZP_04321018.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228589300|gb|EEK47260.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228709580|gb|EEL61629.1| Transcriptional regulator [Bacillus cereus F65185] Length = 73 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 ++ V+ + R E LTQ+ + + + IS +E+ +++ I A TLD L K Sbjct: 8 LMSVSKVKFARVEKGLTQQGLVDIVNVTRHNISIIESNNYNPSLNLCIHTAKTLDKSLDK 67 Query: 80 LL 81 L Sbjct: 68 LF 69 >gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] Length = 268 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 +R E ++Q E+ + + +S E G++ N + + +L+ + + LL Sbjct: 16 QLRTERGMSQDELAEKIMVTRQAVSRWENGETIPNTETLKLLSKEFNVSINTLL 69 >gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 188 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +R KLT + + N TGF+ + IS++E + I + +A D L + Sbjct: 8 GPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 66 >gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] Length = 101 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ +TQ + + ++S ++ + G S +ID ++ LA LL Sbjct: 7 ERIRELREVIGITQSNLASALNISRSAVNAWKMGTSKPSIDTLVDLADFFHVSTDYLL 64 >gi|126736840|ref|ZP_01752575.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6] gi|126721425|gb|EBA18128.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6] Length = 165 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R +R E +Q+++ G + + +E G + + + + +A L+ +L Sbjct: 6 IRKLRLEKGYSQEQLAEMAGISTRTLQRIERG-ANASPETLKCIASVLEIDFSEL 59 >gi|55379381|ref|YP_137231.1| cell division control protein 21 [Haloarcula marismortui ATCC 43049] gi|55232106|gb|AAV47525.1| cell division control protein 21 [Haloarcula marismortui ATCC 43049] Length = 1175 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 R IR+ LTQ E G +S E G+ + D++ + +T L ++ Sbjct: 681 LGPELRRIREALGLTQSE----CGLPRSTYQHYERGRRNPSRDSLESVLDAFETRLAEM 735 >gi|330719170|ref|ZP_08313770.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 286 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + + IRK ++Q+++ G +QS +S +E K+ + +++L H L+ + Sbjct: 6 GSVIKEIRKLRGISQQQLGQLIG-SQSMVSRIENNKAEPSDHTLLLLCHALNISFDEYF 63 >gi|317050874|ref|YP_004111990.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945958|gb|ADU65434.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 101 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + +RK LTQ+E+ G QS +S E + I+ + L LD Sbjct: 7 PTPEYLGKTLQALRKAKGLTQEELAKLAGVKQSTVSHAENNTRGMRIETLYSLLAALD-- 64 Query: 77 LWKLLKP 83 L+ L+P Sbjct: 65 LYLNLRP 71 >gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 184 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R EA L Q E+ + IS +E G + + + + A P Sbjct: 1 MTIGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTKPSTELVNRCAKYFGVPADY 60 Query: 80 LL 81 LL Sbjct: 61 LL 62 >gi|229553757|ref|ZP_04442482.1| transcription regulator [Lactobacillus rhamnosus LMS2-1] gi|229312862|gb|EEN78835.1| transcription regulator [Lactobacillus rhamnosus LMS2-1] Length = 324 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK LT ++ + T + S++S++E G++ I + ++ L L+T + L Sbjct: 7 LRQIRKNKGLTLAQVADAT-ISSSYLSKVERGQNDITVTKLLHLLERLETTPEEFL 61 >gi|229002961|ref|ZP_04160828.1| transcriptional regulator [Bacillus mycoides Rock3-17] gi|228758312|gb|EEM07492.1| transcriptional regulator [Bacillus mycoides Rock3-17] Length = 119 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 I + IR TQ++ + ++ +S +E+GK T + + + +++ + Sbjct: 4 IIGKRIKEIRMSLGYTQQQFADNVDISKPMVSYIESGKKTPSRETVSKISNLANVS 59 >gi|256829912|ref|YP_003158640.1| XRE family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579088|gb|ACU90224.1| transcriptional regulator, XRE family [Desulfomicrobium baculatum DSM 4028] Length = 120 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +TQ+++ TG A+ ISE+E K I N LA L + L Sbjct: 63 LAGARHREGMTQEQLAKATGIARRHISEMENNKRPIGKLNARKLAAALHVDPRRFL 118 >gi|227545304|ref|ZP_03975353.1| XRE family transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227184700|gb|EEI64771.1| XRE family transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 201 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + R + TQ+++ R ++ IS E +S +I ++ ++ L LL+ Sbjct: 1 MKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLR 57 >gi|226940427|ref|YP_002795501.1| prophage repressor protein [Laribacter hongkongensis HLHK9] gi|226715354|gb|ACO74492.1| Putative prophage repressor protein [Laribacter hongkongensis HLHK9] Length = 233 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 +RM R R AKLTQ+++ + G ++ +S E G+ + M+ ++ +TPL Sbjct: 34 QRMKINEWVRIARANAKLTQQQLADVLGCTKANVSAWENGRHEPSYMQMMSISALSNTPL 93 >gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002] gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002] Length = 324 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R+ LTQ E+ R G + I+ +E G +++ +A L Sbjct: 97 LGKRVTHARELKGLTQLELAKRVGVSAQTINFVENG-RNKGTKHLLAIAKALGVS 150 >gi|212715319|ref|ZP_03323447.1| hypothetical protein BIFCAT_00213 [Bifidobacterium catenulatum DSM 16992] gi|212661776|gb|EEB22351.1| hypothetical protein BIFCAT_00213 [Bifidobacterium catenulatum DSM 16992] Length = 79 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 ++ E+ R + +TQ+E+ + G ++ +S G + ++ +A L+ Sbjct: 4 VINEQQTIAKLVRRELRAKHMTQRELADEAGLSEQALSNKLRGLKNFTLRDVSRMADCLE 63 Query: 75 TPLWKLL 81 + +LL Sbjct: 64 VSVDELL 70 >gi|253702724|ref|YP_003023913.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251777574|gb|ACT20155.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 307 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI--DNMIILAHTLDTPLWKL 80 R +R+ +LTQ + N G IS E +I +N LA L+ PL + Sbjct: 20 GTRIRTVREAKRLTQLYVANVVGVTTDTISRWEN-NRYPSIKRENAQKLADALEVPLVDI 78 Query: 81 LK 82 L+ Sbjct: 79 LR 80 >gi|168210926|ref|ZP_02636551.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|209947633|ref|YP_002291140.1| putative LexA repressor [Clostridium perfringens] gi|170711066|gb|EDT23248.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|209910424|dbj|BAG75513.1| putative LexA repressor [Clostridium perfringens] Length = 379 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK+ K++Q++ + A+S +S E KS I ++ ++ ++ + +LL Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69 >gi|167561623|ref|ZP_02354539.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167568859|ref|ZP_02361733.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 216 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 31/62 (50%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N +R E +L+ + +G +++ ++++E+ +S +I + +A L + Sbjct: 29 LVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 88 Query: 81 LK 82 L+ Sbjct: 89 LR 90 >gi|148993187|ref|ZP_01822753.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|147928161|gb|EDK79179.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|332072036|gb|EGI82523.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] Length = 215 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 137 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + +RK+ + TQ+++ + ++S IS+ E G + +I ++ L + L+ Sbjct: 5 LGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGSTLPDIQSLEKLCRLFNVSADFLI 64 >gi|38257088|ref|NP_940750.1| hypothetical protein pPI-1p01 [Staphylococcus warneri] gi|38142381|dbj|BAD00985.1| hypothetical protein [Staphylococcus warneri] Length = 203 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 + +RK+ LTQ+ + + I +E G+ ++ + + +++ LD + +L + Sbjct: 4 SKIAKLRKDKSLTQENLAEKACVTVRTIQRIEAGEE-VSSETLKNISNVLDVTINELFE 61 >gi|67924432|ref|ZP_00517858.1| Helix-turn-helix motif:4Fe-4S ferredoxin, iron-sulfur binding [Crocosphaera watsonii WH 8501] gi|67853721|gb|EAM49054.1| Helix-turn-helix motif:4Fe-4S ferredoxin, iron-sulfur binding [Crocosphaera watsonii WH 8501] Length = 533 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58 ++++++ E + RK L+Q+ + G +QSWI +LE G+ Sbjct: 462 KQRKNQRKTRTKKPPE--FSAQQILDARKRKGLSQRALAKEIGKSQSWIRDLENGR 515 >gi|327389117|gb|EGE87463.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|322830833|ref|YP_004210860.1| mobile mystery protein A [Rahnella sp. Y9602] gi|321166034|gb|ADW71733.1| mobile mystery protein A [Rahnella sp. Y9602] Length = 155 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWKLLKP 83 +R ++ + + R G +QS IS +E G + ++ ++ + +A LD L L+P Sbjct: 35 LRSALGMSTRSLAERCGLSQSRISLIEKGEIEGSLTLNTLEKIAEGLDCELVYFLQP 91 >gi|288928743|ref|ZP_06422589.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 317 str. F0108] gi|288329727|gb|EFC68312.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella sp. oral taxon 317 str. F0108] Length = 104 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 1/73 (1%) Query: 3 RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62 + D + + R + KLTQ ++ G ++ +S +E G + Sbjct: 18 GKPGDLAREQYESDINAFLIGETIKKARLQRKLTQAQLGELMGVKRAQVSRIE-GGRNLT 76 Query: 63 IDNMIILAHTLDT 75 + + Sbjct: 77 FATLSRAFKAMGV 89 >gi|251791287|ref|YP_003006008.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247539908|gb|ACT08529.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 195 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 8 EPHLSDA---ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 EPH S+ +R + +R+E + E+ +G +++ +S LE +S+ Sbjct: 2 EPHFSETARLSETDRRL-AERLAALRRERGWSLDELSQSSGISRATLSRLERMESSPTAV 60 Query: 65 NMIILAHTLDTPLWKLL 81 + L + LL Sbjct: 61 LLGRLCAVYGCTMSSLL 77 >gi|229099483|ref|ZP_04230412.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] gi|228683979|gb|EEL37928.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] Length = 79 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|229119044|ref|ZP_04248386.1| hypothetical protein bcere0017_53050 [Bacillus cereus Rock1-3] gi|228664435|gb|EEL19934.1| hypothetical protein bcere0017_53050 [Bacillus cereus Rock1-3] Length = 51 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 23/47 (48%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+++ N+ G + I LE GK + +A L+ P+ L Sbjct: 1 MSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLF 47 >gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] Length = 95 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 30/61 (49%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++RK+ L+Q+ + + ++ +S+ E+ +S +I+ ++ L+ LL Sbjct: 3 LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62 Query: 82 K 82 K Sbjct: 63 K 63 >gi|254500038|ref|ZP_05112191.1| hypothetical protein SADFL11_76 [Labrenzia alexandrii DFL-11] gi|222441505|gb|EEE48182.1| hypothetical protein SADFL11_76 [Labrenzia alexandrii DFL-11] Length = 49 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68 +TQKEI +G +Q ++S LE GK + I Sbjct: 1 MTQKEIAAISGISQQYLSSLERGKLNPTVIASIR 34 >gi|222055943|ref|YP_002538305.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565232|gb|ACM21204.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 130 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +R++ N R R+ +L+ ++ G + IS++E+GK ++ + +A TL Sbjct: 56 VDRLLDGENPIRVWREYRRLSAADLAKACGVTAAAISQIESGKRKSSVTLLHKIARTLKV 115 Query: 76 PLWKLL 81 L L+ Sbjct: 116 DLEMLI 121 >gi|197105920|ref|YP_002131297.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196479340|gb|ACG78868.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 93 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 27/55 (49%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 R++A L+Q+ + R S ++ +E G+ +++ +A + P L++ Sbjct: 15 EARRQAGLSQRALAARLEKTGSHVAMIERGQRRVDLLEFCRMADCMGLPAEVLVR 69 >gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M ++ + RK++ L+Q+ + + G ++ IS+ ET ++ +I LA + L + Sbjct: 9 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYNMTLDE 68 Query: 80 LLK 82 L++ Sbjct: 69 LIE 71 >gi|149012465|ref|ZP_01833496.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147763521|gb|EDK70457.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 FR RKE +L+Q+ + G QS IS++E G + D + L+ L+ PL Sbjct: 4 LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58 >gi|84501835|ref|ZP_00999993.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597] gi|84389830|gb|EAQ02464.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597] Length = 85 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 RK A LTQ E+ R QS+++ LE+G+ +++ +I+LA L Sbjct: 19 AARKAAGLTQAELALRLRCHQSFVARLESGERRVDVVELIVLARALQI 66 >gi|322373236|ref|ZP_08047772.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321278278|gb|EFX55347.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 69 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N + +R L Q E+ G ++ IS LE G+ T ++ I +A P+ + Sbjct: 5 NRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTPSVIIAITIAQIFKEPVENVF 62 >gi|312901966|ref|ZP_07761228.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290902|gb|EFQ69458.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 69 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N R+IR++ +TQ+++ +Q+ S+ ETGK +I +A D + LL Sbjct: 4 KNIRSIREDNDVTQQQMAELLNVSQNTYSQYETGKIEWTASTLIKVADYFDVSVDYLL 61 >gi|300856338|ref|YP_003781322.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436453|gb|ADK16220.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 128 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R+E +T + + +S +S E T N+D + LA + + LL Sbjct: 4 FTQRMKELRREKNITLENLAKALNTTKSTLSRYENNLRTPNVDFINQLAKYFNVSVDYLL 63 >gi|255323925|ref|ZP_05365051.1| putative DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255299105|gb|EET78396.1| putative DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 118 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Query: 33 AKLTQKEIRNRTGFAQSWISELET------GKSTINIDNMIILAHTLDTPLWKLL 81 ++Q+ + +G ++S IS LE + + + LA L+ P LL Sbjct: 20 RGISQQALAEISGVSRSQISNLERNENGVHAMADPQLSTVYKLALALEIPPAVLL 74 >gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153] gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 126 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A +R+I R RKE + +++ +Q IS E G INI +++ +A L Sbjct: 15 ATEADRLI-GEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFL 73 Query: 74 DTPL 77 +TP+ Sbjct: 74 ETPI 77 >gi|237808624|ref|YP_002893064.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237500885|gb|ACQ93478.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 93 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 22/55 (40%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 RK TQ + R A+ IS +E G+ T ++ +++ L L Sbjct: 19 GKQCAEQRKAKGWTQADAAIRANLARPVISMIERGRFTGSLKSLVAYLSVLGLEL 73 >gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica] gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica] Length = 133 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ L+Q + G + E G S +++ +I +A L + +L+ Sbjct: 16 FAERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGASAPHLETVIKIADVLQVTIDELV 75 >gi|150009363|ref|YP_001304106.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|255016216|ref|ZP_05288342.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|256842368|ref|ZP_05547871.1| transcriptional regulator [Parabacteroides sp. D13] gi|262384722|ref|ZP_06077855.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|298377851|ref|ZP_06987801.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|301312270|ref|ZP_07218187.1| DNA-binding protein [Bacteroides sp. 20_3] gi|149937787|gb|ABR44484.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256735975|gb|EEU49306.1| transcriptional regulator [Parabacteroides sp. D13] gi|262293703|gb|EEY81638.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|298265297|gb|EFI06960.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|300829692|gb|EFK60345.1| DNA-binding protein [Bacteroides sp. 20_3] Length = 193 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 I +NIR+ +L+ +E+ R+G I +E ++ +I +A L L Sbjct: 5 KIIGAKIKNIRESKQLSIEEVAERSGLGIEQIERIEGNLDFPSLAPLIKIARVLGVRL 62 >gi|170721030|ref|YP_001748718.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169759033|gb|ACA72349.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 183 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 25/51 (49%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 R +RK LT E+ + + ++S++E G S + ++ ++ L P Sbjct: 12 IRGLRKHRGLTLGELAIKVKRSLGFLSQVERGLSQPTVADLTAISEALHVP 62 >gi|325926434|ref|ZP_08187757.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] gi|325543177|gb|EGD14617.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] Length = 134 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-----SWISELETGKST 60 R + ++ R+ R TQ E+ R G + +S ETG+ Sbjct: 16 RAIFSMPKPKTPA-TVYGTRLRHARMAMGWTQAELAERIGMVDNVSGATRVSRYETGQHD 74 Query: 61 INIDNMIILAHTLDTP 76 + LA L P Sbjct: 75 PDPATAEALAKALKLP 90 >gi|325833594|ref|ZP_08166043.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485518|gb|EGC87987.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 101 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 6 RDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63 ++E L +R+ + +R L+Q + G IS LE G + + Sbjct: 3 KNEKMARKDPLVQRLSADLGSRLLEVRTSEGLSQTTLAEMVGTKHPRISNLEGGLVDVRL 62 Query: 64 DNMIILAHTLDTPLWKLL 81 +++ LA LD +LL Sbjct: 63 SDIVKLARALDVNPGELL 80 >gi|315038439|ref|YP_004032007.1| transcriptional regulator, XRE family protein [Lactobacillus amylovorus GRL 1112] gi|325956850|ref|YP_004292262.1| XRE family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|312276572|gb|ADQ59212.1| Transcriptional regulator, XRE family protein [Lactobacillus amylovorus GRL 1112] gi|325333415|gb|ADZ07323.1| transcriptional regulator, XRE family protein [Lactobacillus acidophilus 30SC] gi|327183636|gb|AEA32083.1| XRE family transcriptional regulator [Lactobacillus amylovorus GRL 1118] Length = 117 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80 R+E KLTQ+++ + + ++IS LE K I+I + +A L+T + Sbjct: 5 LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTTTPDI 64 Query: 81 L 81 + Sbjct: 65 I 65 >gi|311030669|ref|ZP_07708759.1| YazB [Bacillus sp. m3-13] Length = 71 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 + N + +R +Q ++ + G + I +E G+ + +I + LA L + +L Sbjct: 1 MLCNRVKELRARHGFSQSDLGSLVGVTRQTIGFIEKGEFSPSIALSLRLAKHLKVKVDEL 60 Query: 81 L 81 Sbjct: 61 F 61 >gi|304404381|ref|ZP_07386042.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346188|gb|EFM12021.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 109 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 M + R +R L+Q+E+ + G +S S E D +I L+ + L Sbjct: 3 MTMGDRLRELRLRKNLSQEEVAKQIGITRSAYSHYEINNRQPVYDTLIKLSSYFEVSL 60 >gi|302542772|ref|ZP_07295114.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302460390|gb|EFL23483.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 308 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 ++ R+R F R +R+ A LT E G +S +E G++++ + + +L Sbjct: 17 ANPTYRQRR-FGAEVRRLRERAGLTVGEAARLMGMHSPHLSNVEAGRTSLAAERLGVLTQ 75 Query: 72 TLD 74 L+ Sbjct: 76 ALE 78 >gi|302335294|ref|YP_003800501.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319134|gb|ADK67621.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 136 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71 + ER + NN R +R + L+Q ++ + G + S ETG++ + + + L Sbjct: 20 PRSTQGERAVHENNLRYLRDKVGLSQVQVAAQLGVSSKTYSSWETGRTELGAERIRALCD 79 Query: 72 TLDTPLWKLL 81 L +L Sbjct: 80 LLGCTPNDVL 89 >gi|296394319|ref|YP_003659203.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181466|gb|ADG98372.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 471 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 24/53 (45%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 R +R E L+Q + + S+++++E + + ++ L+ TL Sbjct: 7 GPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPLTVPLLVRLSETLGV 59 >gi|282866393|ref|ZP_06275438.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558789|gb|EFB64346.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 406 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLD 74 + E + R+ L+Q+ + + G W+S+ E + ++ + + LA LD Sbjct: 1 MTENLTIGERVAWYRRRRGLSQEVLADLVGRTTDWLSKAENNRIELDRLSVITSLAEALD 60 Query: 75 TPLWKLL 81 L LL Sbjct: 61 VSLGDLL 67 >gi|258538914|ref|YP_003173413.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|257150590|emb|CAR89562.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 324 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R IRK LT ++ + T + S++S++E G++ I + ++ L L+T + L Sbjct: 7 LRQIRKNKGLTLAQVADAT-ISSSYLSKVERGQNDITVTKLLHLLERLETTPEEFL 61 >gi|271963921|ref|YP_003338117.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507096|gb|ACZ85374.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 110 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 5 KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64 +R + RE + +RK A +TQ E+ G Q+ IS++E G+ + ID Sbjct: 25 ERAVGQEAARQRREAYVRGYQLAEMRKAAGITQVELAEALGVTQARISKIENGEVSG-ID 83 Query: 65 NMIILAHTLD 74 + L Sbjct: 84 VVRAYVTALG 93 >gi|237737130|ref|ZP_04567611.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420992|gb|EEO36039.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 181 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + + RK+ +TQ+E+ ++ I++ E+ +S I +I L++ D + LL Sbjct: 21 FGDKIQLQRKKKGMTQEELGEELNVSRQTITKWESNQSFPEIKKIIKLSYFFDVTIDYLL 80 Query: 82 K 82 K Sbjct: 81 K 81 >gi|229105641|ref|ZP_04236274.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] gi|229118501|ref|ZP_04247855.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228665071|gb|EEL20559.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228677777|gb|EEL32021.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] Length = 79 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%) Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 RE M N R +R + +L+Q ++ G ++ IS +E G +I + +A + P Sbjct: 4 REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVP 63 Query: 77 LWKLLK 82 + ++ Sbjct: 64 VEEIFT 69 >gi|219667497|ref|YP_002457932.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537757|gb|ACL19496.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 103 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83 RKE +TQ E+ + G Q+ I+ +E + + + + L L + P Sbjct: 37 AARKEKGITQAELDSLCGVKQTHIARIENNNTDPQLSTIFKILRPLGKTLAVVDIP 92 >gi|110640145|ref|YP_680355.1| XRE family transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110282826|gb|ABG61012.1| transcriptional regulator, XRE family [Cytophaga hutchinsonii ATCC 33406] Length = 122 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%) Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69 LSD + E++ + +R + LTQ+E+ NR+G +S ISE+E G+ ++ ++I L Sbjct: 18 VLSDTAIIEQL--GKELKRMRLKNNLTQQELANRSGLFRSTISEIENGRV-GSLLSLIQL 74 Query: 70 AHTLDT 75 LD Sbjct: 75 LRALDK 80 >gi|49478976|ref|YP_039343.1| transcription activator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140212|ref|YP_086619.1| transcriptional activator [Bacillus cereus E33L] gi|49330532|gb|AAT61178.1| transcription activator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973681|gb|AAU15231.1| transcriptional activator [Bacillus cereus E33L] Length = 285 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 132 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F R +R+ L+Q + G + E G S +++ ++ +A L + +L+ Sbjct: 16 FAERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVSAPHLETVVNIADVLQVSMDELV 75 >gi|330824754|ref|YP_004388057.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329310126|gb|AEB84541.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 97 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 + + IRK L+Q+ + + +++++S LE + ++ + L ++ Sbjct: 3 AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTLNKLAELCEVMEVHP 60 Query: 78 WKLLK 82 LL Sbjct: 61 LTLLT 65 >gi|315659344|ref|ZP_07912208.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315495769|gb|EFU84100.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 112 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RKE LTQ ++ + +S+ E G N ++ LA D +LL Sbjct: 3 LAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFDITTDELL 62 Query: 82 K 82 Sbjct: 63 T 63 >gi|290131506|gb|ADD23348.1| PlcR [Bacillus sp. RS1045] Length = 285 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|260172935|ref|ZP_05759347.1| Cro/CI family transcriptional regulator [Bacteroides sp. D2] gi|315921217|ref|ZP_07917457.1| predicted protein [Bacteroides sp. D2] gi|313695092|gb|EFS31927.1| predicted protein [Bacteroides sp. D2] Length = 74 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R +R+ L+ +E ++ + + +E G++ I ++ +A+TL+ L ++ Sbjct: 16 GTRIRRLRESKNLSIQEFADKLEIEYNNVIRIEKGRTNFTIGTLVKIANTLEVNLKDIV 74 >gi|238062483|ref|ZP_04607192.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884294|gb|EEP73122.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 193 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 38 KEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +E+ G + ++SE+E G+ + + + + L L LL+ Sbjct: 2 REVAEAAGVSLPYLSEVERGRKEASSEVLAAICRALGIGLSDLLE 46 >gi|229020571|ref|ZP_04177313.1| hypothetical protein bcere0030_50500 [Bacillus cereus AH1273] gi|229026789|ref|ZP_04183121.1| hypothetical protein bcere0029_50560 [Bacillus cereus AH1272] gi|228734512|gb|EEL85174.1| hypothetical protein bcere0029_50560 [Bacillus cereus AH1272] gi|228740735|gb|EEL90991.1| hypothetical protein bcere0030_50500 [Bacillus cereus AH1273] Length = 285 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|229158911|ref|ZP_04286968.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342] gi|228624522|gb|EEK81292.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342] Length = 287 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|261368490|ref|ZP_05981373.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569479|gb|EFB75014.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 153 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQ---SWISELETGKSTINIDNMIILAHTLDTPLWK 79 R IR+ +TQ+E+ + G + + I++ E G T D + +AH L+ P Sbjct: 4 GVKIRQIRQHRHMTQRELGEKIGLGKNGANRIAQYEMGYRTPKRDQLNKIAHALNVPEEM 63 Query: 80 L 80 L Sbjct: 64 L 64 >gi|159040395|ref|YP_001539648.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919230|gb|ABW00658.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 402 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLWKLL 81 +R+ A L+++ + G + + + +E G+ ++ + LA L L L Sbjct: 9 GQRVERLRRAAGLSRERLAGLAGLSATTVKFIENGRRSLTLRAAQQLAPHLGVRDLGDLF 68 Query: 82 KP 83 P Sbjct: 69 GP 70 >gi|50955215|ref|YP_062503.1| hypothetical protein Lxx16050 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951697|gb|AAT89398.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 103 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 34/64 (53%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + R+ R + T +++ ++ A ++SE+E G+ + + + +A L+TP+ Sbjct: 5 RQEIGDVLRDFRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVADALETPVS 64 Query: 79 KLLK 82 +++ Sbjct: 65 VIMR 68 >gi|206970068|ref|ZP_03231021.1| putative transcriptional regulator PlcR [Bacillus cereus AH1134] gi|228955599|ref|ZP_04117599.1| hypothetical protein bthur0006_49510 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229112764|ref|ZP_04242296.1| hypothetical protein bcere0018_50020 [Bacillus cereus Rock1-15] gi|229181599|ref|ZP_04308924.1| hypothetical protein bcere0005_49380 [Bacillus cereus 172560W] gi|37650514|emb|CAE47446.1| PlcR protein [Bacillus thuringiensis serovar konkukian] gi|37650602|emb|CAE46798.1| PlcR protein [Bacillus thuringiensis] gi|37650606|emb|CAE46800.1| PlcR protein [Bacillus thuringiensis] gi|37650610|emb|CAE46802.1| PlcR protein [Bacillus thuringiensis] gi|37654142|emb|CAE46904.2| transcriptional regulator [Bacillus thuringiensis] gi|37904132|gb|AAO43573.1| transcriptional activator plcR [Bacillus thuringiensis serovar canadensis] gi|55419785|gb|AAV51963.1| PlcR [Bacillus thuringiensis serovar kurstaki] gi|206734645|gb|EDZ51814.1| putative transcriptional regulator PlcR [Bacillus cereus AH1134] gi|228601795|gb|EEK59291.1| hypothetical protein bcere0005_49380 [Bacillus cereus 172560W] gi|228670598|gb|EEL25910.1| hypothetical protein bcere0018_50020 [Bacillus cereus Rock1-15] gi|228804075|gb|EEM50694.1| hypothetical protein bthur0006_49510 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 285 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|65321312|ref|ZP_00394271.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 83 Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK TQ+++ ++ IS ETG +T +D+ + +A L+ ++ L Sbjct: 7 NLIKARKRKNFTQEQLGALINKQKTVISNWETGYATPTLDDAMQIAQILEEDIYNLF 63 >gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] Length = 129 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 30/60 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 F + +R K+ Q+E+ + G A++ + E GK + + ++ +A+ + + LL Sbjct: 3 FSIRLKKLRDGKKMNQQEVADNLGIARTTYASYEQGKREPDHETLVKIANFFEVTVDYLL 62 >gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM 5427] gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 194 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 R++R E LTQK++ + + +S+ E G +I + L+ L + K+L Sbjct: 6 VGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLGCPDISLLPELSILLKVNIEKIL 65 >gi|291519985|emb|CBK75206.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 122 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77 ++ I R+ +T+ E R ++ E+G T +I + ++A T + Sbjct: 2 DKSIIPQRLAQARENLGITKAEASRRLNLSKIGYGRYESGDRTPSIQTLEVIAQCFGTSV 61 Query: 78 WKL 80 L Sbjct: 62 AYL 64 >gi|283832969|ref|ZP_06352710.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291071576|gb|EFE09685.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 200 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 26/62 (41%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + RK+ K++ E+ + ++ + E+E K+ +I + LA + + Sbjct: 20 EAVSQRIKQYRKQKKMSLDELSRQANVSKGMLVEIEGCKANPSIALLCRLAAAMGVSVAD 79 Query: 80 LL 81 + Sbjct: 80 FV 81 >gi|256957168|ref|ZP_05561339.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256947664|gb|EEU64296.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|315034185|gb|EFT46117.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 191 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82 +N R+E +Q+E+ + ++ IS E +S +I N+++L+ D L +L+K Sbjct: 5 KQIKNYREEFNFSQEELAKKLFVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDELVK 63 >gi|190889812|ref|YP_001976354.1| transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|218512245|ref|ZP_03509085.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli 8C-3] gi|190695091|gb|ACE89176.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] Length = 122 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80 I +N R +R +++Q E+ G I + E G + ++ + +A LD + L Sbjct: 8 IVGHNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISVL 67 Query: 81 LK 82 + Sbjct: 68 FE 69 >gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum DJO10A] gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 161 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 M + +R+E LTQ + + Q +S E G + +ID + +++ + P+ + Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 80 LLK 82 L++ Sbjct: 61 LME 63 >gi|73670452|ref|YP_306467.1| hypothetical protein Mbar_A2992 [Methanosarcina barkeri str. Fusaro] gi|72397614|gb|AAZ71887.1| hypothetical protein Mbar_A2992 [Methanosarcina barkeri str. Fusaro] Length = 67 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 N +RK+ + Q+E+ ++ I LE G+ +I LA +T Sbjct: 3 NRLEILRKQKGIKQEELAEALEVSRQTIGSLENGRYNPSIILAFKLARYFNT 54 >gi|30263987|ref|NP_846364.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Ames] gi|47529420|ref|YP_020769.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186828|ref|YP_030080.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Sterne] gi|165872136|ref|ZP_02216775.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0488] gi|167633556|ref|ZP_02391880.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0442] gi|167640948|ref|ZP_02399205.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0193] gi|170688781|ref|ZP_02879985.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0465] gi|170705839|ref|ZP_02896302.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0389] gi|177654268|ref|ZP_02936197.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0174] gi|190565991|ref|ZP_03018910.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|217961396|ref|YP_002339964.1| prophage LambdaBa02, DNA-binding protein [Bacillus cereus AH187] gi|227816689|ref|YP_002816698.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229140642|ref|ZP_04269193.1| Prophage LambdaBa02, DNA-binding protein [Bacillus cereus BDRD-ST26] gi|229602019|ref|YP_002868218.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0248] gi|254683681|ref|ZP_05147541.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254721518|ref|ZP_05183307.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A1055] gi|254736026|ref|ZP_05193732.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743917|ref|ZP_05201600.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254754304|ref|ZP_05206339.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Vollum] gi|254758005|ref|ZP_05210032.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30258631|gb|AAP27850.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Ames] gi|47504568|gb|AAT33244.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180755|gb|AAT56131.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. Sterne] gi|164712083|gb|EDR17621.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0488] gi|167510998|gb|EDR86387.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0193] gi|167530962|gb|EDR93649.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0442] gi|170129379|gb|EDS98243.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0389] gi|170667297|gb|EDT18056.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0465] gi|172080758|gb|EDT65839.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0174] gi|190562910|gb|EDV16876.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|217067707|gb|ACJ81957.1| prophage LambdaBa02, DNA-binding protein [Bacillus cereus AH187] gi|227004804|gb|ACP14547.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228642815|gb|EEK99095.1| Prophage LambdaBa02, DNA-binding protein [Bacillus cereus BDRD-ST26] gi|229266427|gb|ACQ48064.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str. A0248] Length = 75 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N RK TQ+++ ++ IS ETG +T +D+ + +A L+ ++ L Sbjct: 7 NLIKARKRKNFTQEQLGALINKQKTVISNWETGYATPTLDDAMQIAQILEEDIYNLF 63 >gi|15900927|ref|NP_345531.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|237650284|ref|ZP_04524536.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CCRI 1974] gi|237822126|ref|ZP_04597971.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CCRI 1974M2] gi|14972531|gb|AAK75171.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 288 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77 + +N RKE K++Q+E+ G Q IS LE+G+ T D + LA L + Sbjct: 4 LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSM 59 >gi|15924988|ref|NP_372522.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|156980315|ref|YP_001442574.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|282919844|ref|ZP_06327576.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427] gi|14247771|dbj|BAB58160.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu50] gi|156722450|dbj|BAF78867.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu3] gi|282316482|gb|EFB46859.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427] Length = 242 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 27/54 (50%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 F + + I E K++Q E+ RTG ++ IS+ GK D + LA L+ Sbjct: 8 FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 61 >gi|330467550|ref|YP_004405293.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810521|gb|AEB44693.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 379 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII-LAHTLDTPLWKL 80 +R ++Q+ +R G ++SW+ ++E G ++ ++I +A L L Sbjct: 12 LGRRVAELRAHRGMSQQAFADRLGKSKSWVDKVERGVRRLDRYSVIRDIAEVLRLDPTML 71 Query: 81 LKP 83 L P Sbjct: 72 LGP 74 >gi|327191185|gb|EGE58228.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 125 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 F R +R ++QKE+ + +++S LE GK D + +A + Sbjct: 4 FGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58 >gi|323357088|ref|YP_004223484.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273459|dbj|BAJ73604.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 479 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73 A E + R+ R LT E+ G A S +S +E GK + + +A Sbjct: 2 ASSLELTTLGHRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARAT 61 Query: 74 DTPLWKLL 81 +T + +LL Sbjct: 62 ETEVTELL 69 >gi|255524012|ref|ZP_05390974.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186870|ref|ZP_06855271.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255512299|gb|EET88577.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048584|gb|EFG88017.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 222 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 29/54 (53%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75 +NIR +TQK++ + G +S+++E+E G+ IN + + ++ L Sbjct: 4 VGEKIKNIRNSIGMTQKQLGKKLGVNESFVNEVENGRKIINQNLIDRISKVLGK 57 >gi|291302735|ref|YP_003514013.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571955|gb|ADD44920.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 810 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74 F + R R A TQ+ + R + I LE G + + +LA L Sbjct: 5 FGHLLRRHRLAAGFTQESLAERAKLSSQAIGSLERGDRKRPYKYTVDVLADALG 58 >gi|229199476|ref|ZP_04326137.1| hypothetical protein bcere0001_49740 [Bacillus cereus m1293] gi|228583881|gb|EEK42038.1| hypothetical protein bcere0001_49740 [Bacillus cereus m1293] Length = 285 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 + + IR LTQK++ QS +S +E+G ++D + +A L P+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62 >gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82] Length = 298 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 + RK+ +TQK++ + G + +S+ E G ++ + L L L + L Sbjct: 7 GSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNEFL 65 >gi|218510909|ref|ZP_03508787.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 157 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 6 RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65 R A + R R + L+Q E+ + G + + + E+GK+ I+ Sbjct: 19 RAGDDSEQASHPVDIHVGQQLRIRRVHSNLSQSELGQKVGLSYQQVQKYESGKNRISASM 78 Query: 66 MIILAHTLDTP 76 + +A L+ P Sbjct: 79 LYEIAGGLNVP 89 >gi|297203581|ref|ZP_06920978.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197716044|gb|EDY60078.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 274 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 31/54 (57%) Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R R++ +L+Q E+ R + IS +ETG+S + + ++ LA LD P+ + Sbjct: 20 LRAWREQRRLSQLELALRADSSARHISFVETGRSRPSEEMVLRLAEHLDVPVRE 73 >gi|190889651|ref|YP_001976193.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190694930|gb|ACE89015.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 125 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75 F R +R ++QKE+ + +++S LE GK D + +A + Sbjct: 4 FGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58 >gi|170694149|ref|ZP_02885304.1| helix-turn-helix domain protein [Burkholderia graminis C4D1M] gi|170140889|gb|EDT09062.1| helix-turn-helix domain protein [Burkholderia graminis C4D1M] Length = 79 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79 R RK KLTQ + R + +S +E ++ +D ++ +A+ L L + Sbjct: 8 EALGKEIRARRKLKKLTQAGLALRANVHPNTVSLIERAETVARVDALLDIANALGAALSQ 67 Query: 80 LLK 82 L+K Sbjct: 68 LIK 70 >gi|167770329|ref|ZP_02442382.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] gi|167667651|gb|EDS11781.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] Length = 70 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 RN+R++ L+QK++ +Q+ S+ E GK I +I LA T + LL Sbjct: 3 ERIRNMREDKDLSQKDMAEILHVSQTTYSDYELGKINIPTQTLIKLASFHHTSIDYLL 60 >gi|161508087|ref|YP_001578054.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571] gi|160349076|gb|ABX27750.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571] Length = 289 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74 I RE M + R + LTQK+ + + S+ S++E + I +++I + + Sbjct: 3 IRRESMTIGELLKEERIKKGLTQKQFADSI-VSVSYYSKVEKNEHRITAEDLITILEHNN 61 Query: 75 TPLWKLLK 82 PL K Sbjct: 62 IPLCSFFK 69 >gi|160880556|ref|YP_001559524.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429222|gb|ABX42785.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 66 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 N IRK + Q+E+ N ++ I LE G+ +I +A + + + Sbjct: 3 NRLEEIRKLHGIKQEELANILEVSRQTIGSLENGRYNPSILLAFKIARYFNMRIEDIF 60 >gi|86559544|ref|YP_473365.1| putative LexA repressor [Clostridium perfringens CPE str. F4969] gi|168215112|ref|ZP_02640737.1| LexA repressor [Clostridium perfringens CPE str. F4969] gi|86475816|dbj|BAE78992.1| putative LexA repressor [Clostridium perfringens] gi|170713481|gb|EDT25663.1| LexA repressor [Clostridium perfringens CPE str. F4969] Length = 393 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 31/60 (51%) Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81 ++ RK+ K++Q++ + A+S +S E KS I ++ ++ ++ + +LL Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69 >gi|330466394|ref|YP_004404137.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328809365|gb|AEB43537.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 150 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78 R + + R R+ T +E+ + + ++SE+E G+ + + + + L L Sbjct: 5 RRVIGDALRARRQGQHRTLREVSSAANVSLGYLSEIERGQKEPSSELLAAICDALGARLS 64 Query: 79 KLLK 82 +LL+ Sbjct: 65 ELLR 68 >gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 228 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + RKE K+TQK+I ++ G S E G + + + L L+ P Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVP 57 >gi|308181771|ref|YP_003925899.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047262|gb|ADN99805.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 188 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76 + R E KLTQ ++ + Q ++ E GK T+ + + L+ D P Sbjct: 6 GQRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVP 59 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.306 0.140 0.365 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,411,812,231 Number of Sequences: 14124377 Number of extensions: 42941538 Number of successful extensions: 180743 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 19647 Number of HSP's successfully gapped in prelim test: 3955 Number of HSP's that attempted gapping in prelim test: 159412 Number of HSP's gapped (non-prelim): 23897 length of query: 83 length of database: 4,842,793,630 effective HSP length: 54 effective length of query: 29 effective length of database: 4,080,077,272 effective search space: 118322240888 effective search space used: 118322240888 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 76 (33.8 bits)