BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781147|ref|YP_003065560.1| transcriptional regulator
[Candidatus Liberibacter asiaticus str. psy62]
         (83 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str.
          psy62]
 gi|254040824|gb|ACT57620.1| transcriptional regulator [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 83

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST
Sbjct: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          INIDNMIILAHTLDTPLWKLLKP
Sbjct: 61 INIDNMIILAHTLDTPLWKLLKP 83


>gi|315122539|ref|YP_004063028.1| transcriptional regulator [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495941|gb|ADR52540.1| transcriptional regulator [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 83

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/83 (90%), Positives = 80/83 (96%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRR++DE HLS+ ILRERMIFVNNFRN RKEAK+TQKEIRNRTGFAQSWISELETGKST
Sbjct: 1  MPRRRKDESHLSNTILRERMIFVNNFRNTRKEAKITQKEIRNRTGFAQSWISELETGKST 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          INIDNMIILAHTL+TPLWKLLKP
Sbjct: 61 INIDNMIILAHTLNTPLWKLLKP 83


>gi|325919535|ref|ZP_08181552.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
 gi|325549984|gb|EGD20821.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
          Length = 85

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 1  MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          MP R R  D       +  ER+IF   FR  RK AKL+Q+ IR+RTGF Q+WIS +ETGK
Sbjct: 1  MPGRPRAADSHQDPKPVPVERLIFARKFRQARKAAKLSQRGIRDRTGFTQAWISAVETGK 60

Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83
          S  N+D+M +LA  +  PLWKLL P
Sbjct: 61 SAPNLDSMAVLAKCVGVPLWKLLVP 85


>gi|325917597|ref|ZP_08179796.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC
          35937]
 gi|325536194|gb|EGD07991.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC
          35937]
          Length = 85

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 2/85 (2%)

Query: 1  MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          MP R R  D       +  ER+IF  NFR  RK AKL+Q+++R+RTG  +SWIS +ETGK
Sbjct: 1  MPGRPRAADSHQDPKPVPVERLIFARNFRQARKAAKLSQRDVRDRTGLTRSWISNIETGK 60

Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83
          S  N+DNM +LA  +  PLWKLL P
Sbjct: 61 SPPNLDNMAMLAKCVGVPLWKLLVP 85


>gi|10956712|ref|NP_061657.1| transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9112239|gb|AAF85570.1|AE003851_1 transcriptional regulator [Xylella fastidiosa 9a5c]
          Length = 86

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 51/70 (72%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A+  ER+IF  NFRN R  AKL+Q+EI  +TG  Q+WIS +E G+STI+IDNM  LA  +
Sbjct: 15 AVEPERLIFGRNFRNARNMAKLSQREIAEKTGLTQNWISMVENGRSTISIDNMAKLAKCV 74

Query: 74 DTPLWKLLKP 83
          + PLWKLL P
Sbjct: 75 NVPLWKLLIP 84


>gi|114326578|ref|YP_743737.1| XRE family transcriptional regulator [Nitrosomonas eutropha C91]
 gi|114309517|gb|ABI60759.1| transcriptional regulator, XRE family [Nitrosomonas eutropha C91]
          Length = 85

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 45/65 (69%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  NFR+ R+ A+LTQ +I   TG  + +IS++E GK +I++D M +LA+ +  PLW
Sbjct: 15 RFIFGRNFRHARRAAELTQCDITRITGVMRGYISKVECGKVSISVDKMEVLANAVKVPLW 74

Query: 79 KLLKP 83
          KLL P
Sbjct: 75 KLLTP 79


>gi|312113854|ref|YP_004011450.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218983|gb|ADP70351.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 101

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 2   PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
           P+RKR  P L+         ER IF  N R  R +A L+Q+E+   TG AQ+ ISELE  
Sbjct: 16  PKRKRALPVLAKKRAPDSQPEREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENA 75

Query: 58  KSTINIDNMIILAHTLDTPLWKLLKP 83
              + ID M+ LA  +  PL+++ +P
Sbjct: 76  MHNVCIDTMVKLAQAVKKPLFQMFQP 101


>gi|32442173|gb|AAP82048.1| putative mating pair formation protein [Stenotrophomonas
          maltophilia]
          Length = 98

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 39/61 (63%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  NFR  R  A LTQK+I  + G  Q ++SE+E G S I++DNM +LA  +  PLW LL
Sbjct: 38 FAKNFRAARIRAGLTQKDICEKAGLTQPYLSEVERGLSNISLDNMEVLAGLVHKPLWVLL 97

Query: 82 K 82
          +
Sbjct: 98 R 98


>gi|312115518|ref|YP_004013114.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220647|gb|ADP72015.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 101

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 2   PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
           P+RKR  P L+         ER IF  N R  R +A L+Q+E+   TG AQ+ ISELE  
Sbjct: 16  PKRKRALPVLAKKRAPDSQPEREIFARNLRKSRIDAGLSQRELAAVTGIAQAHISELENA 75

Query: 58  KSTINIDNMIILAHTLDTPLWKLLKP 83
              + ID M+ LA  +  PL+++ +P
Sbjct: 76  MHNVCIDTMVKLAQAMRKPLFQMFQP 101


>gi|312114516|ref|YP_004012112.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219645|gb|ADP71013.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 101

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           ER IF  N R  R +A L+Q+E+   TG AQ+ ISELE     + ID M+ LA  +  PL
Sbjct: 36  EREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENAMHNVCIDTMVKLAQAVKKPL 95

Query: 78  WKLLKP 83
           +++ +P
Sbjct: 96  FQMFQP 101


>gi|27802476|gb|AAO21114.1| unknown [Rhizobium leguminosarum bv. viciae]
          Length = 72

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  LD    
Sbjct: 4  RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVSHV 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELVRP 68


>gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50]
 gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50]
          Length = 118

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ +F    R IRK+  +TQ E+  +TG A  +IS +ETGK+ +++D  + L +  D P
Sbjct: 8  DKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLVNAFDVP 66


>gi|300309363|ref|YP_003773455.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072148|gb|ADJ61547.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 42/64 (65%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+IF  N R +R+  +++Q+E+  R   +++++SE+E G+  I++DNM  LA  L+  L 
Sbjct: 11 RLIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEMELP 70

Query: 79 KLLK 82
           LL+
Sbjct: 71 DLLR 74


>gi|296314733|ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC
          43768]
 gi|296838467|gb|EFH22405.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC
          43768]
          Length = 81

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 41/64 (64%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+IF  N R +R+  +L+Q+E+      ++++ISE+E G  +++ID M  +A  L  PL 
Sbjct: 11 RLIFAQNMRQVRRLKELSQEELAFSARVSKTYISEIERGSRSVSIDVMGQIADALGMPLE 70

Query: 79 KLLK 82
          +L++
Sbjct: 71 ELVR 74


>gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520]
          Length = 154

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 QLLAP 70


>gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509]
          Length = 154

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 QLLAP 70


>gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1]
 gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1]
          Length = 185

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 37  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96

Query: 79  KLLKP 83
           +LL P
Sbjct: 97  QLLAP 101


>gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B]
 gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1]
          Length = 185

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 37  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96

Query: 79  KLLKP 83
           +LL P
Sbjct: 97  QLLAP 101


>gi|222087821|ref|YP_002546359.1| hypothetical protein Arad_4804 [Agrobacterium radiobacter K84]
 gi|221725269|gb|ACM28425.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 72

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+KP
Sbjct: 64 ELVKP 68


>gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium
          caulinodans ORS 571]
 gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium
          caulinodans ORS 571]
          Length = 72

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ++++ R+GF+Q +IS LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELVRP 68


>gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 78

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +D  H  D  LR++  + +  R  R+   ++Q+ +  + G  +++I ++E G+  I+IDN
Sbjct: 3  KDSKHSDDVSLRQK--YGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGERNISIDN 60

Query: 66 MIILAHTLDTPLWKLLKP 83
          +  LA  +   LW++L+P
Sbjct: 61 LERLADAVGEQLWEMLRP 78


>gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 154

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 QLLAP 70


>gi|34496512|ref|NP_900727.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34102366|gb|AAQ58732.1| probable transcriptional regulator [Chromobacterium violaceum
          ATCC 12472]
          Length = 87

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L  R +F  N R  R+   ++Q+ +  + G +++++SE+E G+  ++IDNM  LA  L  
Sbjct: 8  LTARAVFARNLRIARRLHDVSQEALALQAGMSRTYVSEIERGERNVSIDNMGALADALGV 67

Query: 76 PLWKLLKP 83
           L  L+ P
Sbjct: 68 ALRDLVDP 75


>gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 2  RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 61

Query: 79 KLLKP 83
          +L KP
Sbjct: 62 ELFKP 66


>gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13]
 gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13]
 gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13]
          Length = 75

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L KP
Sbjct: 64 ELFKP 68


>gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family
          [Sinorhizobium fredii NGR234]
 gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
          y4dJ
 gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a
 gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family
          [Sinorhizobium fredii NGR234]
          Length = 77

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELVTP 68


>gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 72

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELVSP 68


>gi|329120702|ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460499|gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
          Length = 82

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RMIF  N R IR+  +++Q+E+      ++ +I E+E G   + ID M  ++  L+ PL 
Sbjct: 12 RMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMGRISDALEVPLD 71

Query: 79 KLL 81
          KLL
Sbjct: 72 KLL 74


>gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 72

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  L+  L     
Sbjct: 4  RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHV 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELVQP 68


>gi|332296775|ref|YP_004438697.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332179878|gb|AEE15566.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  N + IR   KL Q E+  + G +  ++S+LETG+S+ + D ++ LA  L    ++LL
Sbjct: 7  YAANIKKIRIAKKLNQAELAEKLGLSVKYVSDLETGRSSGSFDTLVNLADALGVEPYELL 66

Query: 82 KP 83
           P
Sbjct: 67 LP 68


>gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM
          5427]
 gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 159

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          ++    + +RKE K++QKE+   +G + S+I ++E+G K+  +++ +  +A  LDTP++ 
Sbjct: 1  MYGEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYH 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4024]
          Length = 152

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 4  RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 63

Query: 79 KLL 81
          +LL
Sbjct: 64 RLL 66


>gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933]
 gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai]
 gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC508]
 gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4115]
 gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str.
          TW14588]
 gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str.
          TW14359]
 gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933]
 gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str.
          Sakai]
 gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC508]
 gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4115]
 gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str.
          TW14588]
 gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC1212]
 gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str.
          1125]
 gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str.
          1044]
          Length = 154

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 RLL 68


>gi|13474794|ref|NP_106364.1| transcriptional regulatory protein [Mesorhizobium loti
          MAFF303099]
 gi|14025550|dbj|BAB52150.1| transcriptional regulatory protein [Mesorhizobium loti
          MAFF303099]
          Length = 75

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+G++Q ++S LE G+    +  +  L+  L     
Sbjct: 7  RQLVGTNFARLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHV 66

Query: 79 KLLKP 83
          +L+KP
Sbjct: 67 ELVKP 71


>gi|116331369|ref|YP_801087.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125058|gb|ABJ76329.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 114

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           ER  F N  R  R E  LTQ ++  R G  QS+IS++E+GK  + I++ I L    + P
Sbjct: 46  ERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCELYNKP 104


>gi|167855653|ref|ZP_02478411.1| probable transcriptional regulator [Haemophilus parasuis 29755]
 gi|219871715|ref|YP_002476090.1| XRE family transcriptional regulator [Haemophilus parasuis
          SH0165]
 gi|167853225|gb|EDS24481.1| probable transcriptional regulator [Haemophilus parasuis 29755]
 gi|219691919|gb|ACL33142.1| XRE family transcriptional regulator [Haemophilus parasuis
          SH0165]
          Length = 86

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F NN R IR+   ++Q+ +      ++++IS++E GK  I+ID M  +A  LD  L 
Sbjct: 12 RHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRAISIDAMGKIADALDVNLV 71

Query: 79 KLLK 82
           LLK
Sbjct: 72 DLLK 75


>gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp.
          PCC 8106]
 gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp.
          PCC 8106]
          Length = 72

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 37/59 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N R +R+   L+Q+++  +    +++I  +E G+  +++DN++ +AH L  P  KLL+
Sbjct: 11 SNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHALGVPASKLLE 69


>gi|116327819|ref|YP_797539.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120563|gb|ABJ78606.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 114

 Score = 46.2 bits (108), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           ER  F N  R  R E  LTQ ++  R G  QS+IS++E+GK  + I++ I L    + P
Sbjct: 46  ERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCELYNKP 104


>gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55]
 gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55]
          Length = 154

 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM
          1279]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R +R +  L+Q+++ +  G  ++++SE+E GK  +++DN+  LA+ L     
Sbjct: 5  RTLLAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQVEAA 64

Query: 79 KLLKP 83
          KL+ P
Sbjct: 65 KLVSP 69


>gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 152

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA S++S +E G S  ++D + +LA+ L    W
Sbjct: 4  RKLFGQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEPW 63

Query: 79 KLL 81
          +LL
Sbjct: 64 QLL 66


>gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+ A L+  E+  R+G A+  +S+LE+G     I+ +  L++ L  P+  L
Sbjct: 9  VLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 68

Query: 81 L 81
          L
Sbjct: 69 L 69


>gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909]
 gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L+   W
Sbjct: 6  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 RLL 68


>gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B]
          Length = 150

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 2  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 61

Query: 79 KLL 81
          +LL
Sbjct: 62 QLL 64


>gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L+   W
Sbjct: 6  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 RLL 68


>gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli
          UM146]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89]
 gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473]
 gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473]
          Length = 166

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 18 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 77

Query: 79 KLL 81
          +LL
Sbjct: 78 QLL 80


>gi|111222160|ref|YP_712954.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111149692|emb|CAJ61384.1| Putative transcriptional regulator [Frankia alni ACN14a]
          Length = 100

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLKP 83
           R IR+   LTQ+++ +R G  ++ +++LE+G +  I++   +I+A  LD  L +LL P
Sbjct: 31 LRAIRQLRGLTQQQVADRCGLTRTAVTDLESGRRRDISLGQALIIASALDVDLGRLLDP 89


>gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4]
 gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4]
          Length = 226

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           I   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 51  IIAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGNPSVETLWALGVALDVPFSRL 110

Query: 81  LKP 83
           ++P
Sbjct: 111 VEP 113


>gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family
          [Ketogulonicigenium vulgare Y25]
 gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family
          [Ketogulonicigenium vulgare Y25]
          Length = 73

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+   LTQ+++  R+GF+Q +IS LE G+    I  +  LA  L     
Sbjct: 4  RRLVGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELITP 68


>gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+ A L+  E+  R+G A+  +S+LE+G     I+ +  L++ L  P+  L
Sbjct: 1  MLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter
          autotrophicus Py2]
          Length = 72

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+GF+Q +IS LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63

Query: 79 KLLKP 83
          +L++ 
Sbjct: 64 ELVRA 68


>gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280]
 gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280]
          Length = 154

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    +  R    L+Q+   +R GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RYLFGQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3]
          Length = 153

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F    + +R    ++Q+   +  GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RILFGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 104

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  RK A LTQ E+  +TGF    IS  ETG  T +++ + +LA+ LD  L
Sbjct: 11 RRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQL 61


>gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 201

 Score = 43.9 bits (102), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 26 IIAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGNPSVETLWALGVALDVPFSRL 85

Query: 81 LKP 83
          ++P
Sbjct: 86 VEP 88


>gi|307324784|ref|ZP_07603990.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889666|gb|EFN20646.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 187

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +R E  LT   +  R+G A+  ISELE G+    I+ +  LA+ L+  L  L
Sbjct: 7  VVAGNLQRLRGERGLTLAALAARSGVAKGTISELERGRGNPTIETLFALAYALEATLADL 66

Query: 81 LK 82
          ++
Sbjct: 67 VE 68


>gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 187

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  
Sbjct: 10 QAVIAASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGNPSLETLWALCVALDMPFS 69

Query: 79 KLLKP 83
          +LL P
Sbjct: 70 RLLDP 74


>gi|24215545|ref|NP_713026.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45657075|ref|YP_001161.1| transcriptional regulator [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|24196688|gb|AAN50044.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45600312|gb|AAS69798.1| transcriptional regulator [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 98

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          RE  IF  N    RK+A LTQ E+ NR G  QS+IS++E+G+  +++
Sbjct: 8  REAKIFCKNLIAARKDAHLTQLEVANRLGEPQSYISKIESGERRLDV 54


>gi|326385864|ref|ZP_08207491.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209653|gb|EGD60443.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 76

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R++  LTQ+++  R+GF+Q ++S LE G+    +  +  L+  L     
Sbjct: 4  RKLVGRNFARLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|149916994|ref|ZP_01905495.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149822272|gb|EDM81663.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 130

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +SDA LRE +  V   R  R E  L+Q+E+  R G A + IS+LET + + ++D +  +A
Sbjct: 1  MSDAGLRESLAEV--VRGRRAELGLSQRELAKRAGVADATISKLETQQLSPSLDTLAKIA 58

Query: 71 HTLDTPLWKLLK 82
            LD  +  L+ 
Sbjct: 59 AGLDLDVAALIS 70


>gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC
          19977]
 gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus]
          Length = 185

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R +R EA L+  E+  R+G  +  ISELE G+ T  +D +  L   L  PL
Sbjct: 15 LRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPL 66


>gi|317055988|ref|YP_004104455.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315448257|gb|ADU21821.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 179

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R    E  LTQ E+  RTG ++S+IS+  +GK     D + ILA  L T    LL
Sbjct: 4  FAENLRTAMAERSLTQAELSKRTGISKSFISQYLSGKFKPREDKLSILAQALGTTKGALL 63


>gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
 gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++DA L+   +F    ++ R E  ++Q+E+ +R G  ++++S++E G   +++ ++  LA
Sbjct: 1  MTDADLKS--LFGTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGMRNVSLISIEKLA 58

Query: 71 HTLDTPLWKLLK 82
          H L   +W+L +
Sbjct: 59 HALGLSVWRLFE 70


>gi|152983227|ref|YP_001352681.1| subunit S of type I restriction-modification system
          [Janthinobacterium sp. Marseille]
 gi|151283304|gb|ABR91714.1| subunit S of type I restriction-modification system
          [Janthinobacterium sp. Marseille]
          Length = 78

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +++F +N R IR E   TQ+ +        +++S +E G+  I+I N+  +A  LD P+ 
Sbjct: 13 QLLFASNIRRIRLEKGFTQERVAELADLHTNYVSSVERGERNISICNIERIAFALDVPMS 72

Query: 79 KLLKP 83
          +LL+ 
Sbjct: 73 RLLEA 77


>gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205]
 gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205]
          Length = 224

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINI 63
          +N ++IRK  K+TQKE+  ++G  QS IS+LETG  KST +I
Sbjct: 10 DNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAKSTGSI 51


>gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 207

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R IR+ A L+   +   +G A+  +S+LE+G     I+ +  L++TL  P+  LL
Sbjct: 10 LAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVSSLL 69


>gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 68

 Score = 42.7 bits (99), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     R+ RK   LTQKE+  + G ++S +++ E+GK  + ID ++ +A+ L     
Sbjct: 5  KQITSTQIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFS 64

Query: 79 KLL 81
           LL
Sbjct: 65 TLL 67


>gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703]
          Length = 178

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L+   W
Sbjct: 30 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALNVEPW 89

Query: 79 KLL 81
          +  
Sbjct: 90 QFF 92


>gi|304394885|ref|ZP_07376769.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304357138|gb|EFM21501.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 182

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N     R+ A L+  E+  R G A+S +S+LE G     I+ +  L  TL+ P  +L
Sbjct: 7  IIANALVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 72

 Score = 42.7 bits (99), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+   LTQ+++  R+G +Q ++S LE G+    I  +  LA  LD    
Sbjct: 4  RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELVLP 68


>gi|240950283|ref|ZP_04754558.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
 gi|240295185|gb|EER45993.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
          Length = 88

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R R IF  N R IR+   ++Q+ +      ++++I E+E G+ +++ID M  +A TL+  
Sbjct: 11 RLRYIFAKNMRRIRRWKDISQEALALNANVSRTYIGEIERGERSVSIDVMGKIADTLEVE 70

Query: 77 LWKLLKP 83
          L +L+K 
Sbjct: 71 LSELVKE 77


>gi|322513230|ref|ZP_08066356.1| DNA-binding protein [Actinobacillus ureae ATCC 25976]
 gi|322121006|gb|EFX92847.1| DNA-binding protein [Actinobacillus ureae ATCC 25976]
          Length = 86

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F NN R IR+   ++Q+ +      ++++IS++E GK   +ID M  +A  L+  L 
Sbjct: 12 RHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRATSIDAMGKIADALNVSLI 71

Query: 79 KLLKP 83
           LLK 
Sbjct: 72 DLLKS 76


>gi|197303928|ref|ZP_03168960.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC
          29176]
 gi|197296896|gb|EDY31464.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC
          29176]
          Length = 77

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 37/55 (67%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R+ +    R IR++ K++Q+E+ +  G  +++IS++E GK  ++++N+  +AH L
Sbjct: 6  RVAYGKAVRAIRQDKKISQEELGDLCGLHRTYISDIELGKRNVSLENIDKIAHAL 60


>gi|332827315|gb|EGK00080.1| hypothetical protein HMPREF9455_03604 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 72

 Score = 42.7 bits (99), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 37/57 (64%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IR+E K++Q E+  R  + +S +S +E+GK+ + I  ++ +A +LDT +  ++
Sbjct: 13 NIKKIREEKKISQAELAARCNYEKSNMSRIESGKTNLTIGTLLNIAESLDTTIIHIV 69


>gi|237739116|ref|ZP_04569597.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229423716|gb|EEO38763.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 187

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +NIRK  KL  KE+ ++ G + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 13 IKNIRKSKKLLLKEVASKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 68


>gi|148263207|ref|YP_001229913.1| helix-turn-helix domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146396707|gb|ABQ25340.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4]
          Length = 77

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N RN R +   +Q+E+  + G  +++I  +E G+  + +  + +LA TL   + 
Sbjct: 9  RAILAENIRNFRHKKNFSQEELAEKCGLHRTYIGSVERGERNVTLSTLEVLASTLGVSVP 68

Query: 79 KLL 81
          +LL
Sbjct: 69 ELL 71


>gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 190

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   F +  +  RK  K+T KE+  +     S +S++E G +  +I+ M ++A+ LD PL
Sbjct: 7  EENTFYSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANALDVPL 66

Query: 78 WKLL 81
          +K  
Sbjct: 67 FKFF 70


>gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 178

 Score = 42.4 bits (98), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 38/56 (67%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R IRK+  +T ++I  +TGF +S+IS++E GK++ +I ++  + + L T + +L +
Sbjct: 8  REIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISELFE 63


>gi|328882934|emb|CCA56173.1| hypothetical protein SVEN_2887 [Streptomyces venezuelae ATCC
          10712]
          Length = 62

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R+ R  A LTQ+ +   +G A++ I E+E+G++   +D +++LA  +  P   L
Sbjct: 1  MFGARVRDARMYANLTQQRVGELSGLARATIQEIESGRAAPTVDTVLLLADAIGVPPGVL 60

Query: 81 LK 82
           +
Sbjct: 61 FE 62


>gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51]
 gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 123

 Score = 42.4 bits (98), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            R IRK+ KL+  E+   +G A+S IS+LE+GK  + +ID +  LA  L+  +  LL
Sbjct: 7  QLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVASLL 64


>gi|256821176|ref|YP_003142375.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256799156|gb|ACV29810.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 78

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N +  R E  L+Q+    ++GF +++IS LE  K +I +DN+  +A  L+   + L
Sbjct: 6  VFSKNVKKYRNEMGLSQEAFAEKSGFYRTYISALECKKRSIALDNVQKIADALEIETYLL 65

Query: 81 L 81
           
Sbjct: 66 F 66


>gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 195

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L  TLD P  +LL P
Sbjct: 25 LRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGNPSLETLWALCVTLDVPPSRLLDP 82


>gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083]
 gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 219

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          M  +   +PH++ A  RE+++ V      R+ RK+ ++T  E+ + TG +   +S++E G
Sbjct: 10 MVTKLSQDPHVTSAGEREKVLEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIENG 69

Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82
           ++ ++  +  LA+ L  PL    +
Sbjct: 70 NTSPSLSTLQTLANALSVPLTSFFR 94


>gi|325299767|ref|YP_004259684.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319320|gb|ADY37211.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 103

 Score = 42.4 bits (98), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 8  EPHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          E  LS A   E+ +   +    RN RKE K+TQK++  + G  QS+I+ +E G+  + + 
Sbjct: 26 EGTLSRAEFHEKAMAWYYGEILRNRRKELKMTQKQLAQKIGKEQSYIARVEKGEVDMQLS 85

Query: 65 NMIILAHTLDTPL 77
          +   +AH L+  L
Sbjct: 86 SFFRIAHALNIEL 98


>gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 193

 Score = 42.4 bits (98), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  ++ TLD P  +L+
Sbjct: 19 IAASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGNPSVETLWAISVTLDVPFSRLV 78

Query: 82 KP 83
           P
Sbjct: 79 DP 80


>gi|83950962|ref|ZP_00959695.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
 gi|83838861|gb|EAP78157.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
          Length = 83

 Score = 42.4 bits (98), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D I R      N  RN RK  KLTQ E+ +R+G  Q  IS +ET  S   +D +  L   
Sbjct: 2  DQIARSPKDVGNALRNARKAKKLTQAELASRSGIWQRTISTIETSASGAKLDTIFDLLAA 61

Query: 73 LD 74
          LD
Sbjct: 62 LD 63


>gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130]
 gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130]
          Length = 197

 Score = 42.0 bits (97), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          +L+D    + M   N  R +RK   LT  E+  R G +  +IS++E G S+ +ID++  L
Sbjct: 7  NLADLNASDAMALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDLRAL 66

Query: 70 AHTLDTPL 77
          A   D P+
Sbjct: 67 AAAFDVPI 74


>gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
          Length = 383

 Score = 42.0 bits (97), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           NN +NIRK   +TQ +     G ++S+I +LE  +S  +I  +  +A  LD P+  L+
Sbjct: 131 NNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 188


>gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS]
 gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS]
          Length = 72

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    RN+RK+A ++Q+E+ +R G  ++++  +E G+   ++ N+  ++  L  P+  L 
Sbjct: 11 FGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALKVPVSDLF 70

Query: 82 K 82
          K
Sbjct: 71 K 71


>gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 184

 Score = 42.0 bits (97), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          + R  R+ + ++  E+  R G A+S +S+LE+G    +++ +  L   LD P+ +LL P
Sbjct: 13 SLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQLLDP 71


>gi|260888382|ref|ZP_05899645.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330838303|ref|YP_004412883.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260861918|gb|EEX76418.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329746067|gb|AEB99423.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 98

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +    RK  KLTQKE+  RTG +Q+ IS +ETG++  ++  M  LA  L   L  + 
Sbjct: 30 LIRSLLEARKVTKLTQKELSARTGISQADISRIETGEANPSMQTMKRLAEGLGMQLRVMF 89

Query: 82 KP 83
           P
Sbjct: 90 VP 91


>gi|167571316|ref|ZP_02364190.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis C6786]
          Length = 100

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 38/59 (64%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N R+ R++  L+Q+++ +  G  ++++S++E     I++DN+  LA  L+T +  LLKP
Sbjct: 18 NLRDQRQQRGLSQEKLADEAGLHRTYVSQVERTIVNISLDNLTKLADALETDVHLLLKP 76


>gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 186

 Score = 42.0 bits (97), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R+ A L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L++P
Sbjct: 16 LRRERERAGLSLTELARRAGIAKSTLSQLESGSGNPSVETLWALGVALDVPFSRLVEP 73


>gi|50365272|ref|YP_053697.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1]
 gi|50363828|gb|AAT75813.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1]
          Length = 75

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N R IR    LTQ+E+  R G ++++IS+ E G+  I I  +  L   L+T   +
Sbjct: 12 LIIAANLRKIRSSKGLTQEELGFRCGISKNYISDFERGRRNITIKILQKLIEGLETTPQE 71

Query: 80 LLKP 83
          LLK 
Sbjct: 72 LLKA 75


>gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2]
          Length = 183

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++ AI RER+            A L+  E+  R G  +S +S LE G    +++ M  LA
Sbjct: 9  IAAAIKRERL-----------RADLSLSEVARRAGIGKSTMSGLEAGTGNPSVETMWALA 57

Query: 71 HTLDTPLWKLLKP 83
            LD PL +LL P
Sbjct: 58 AALDIPLARLLDP 70


>gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410]
 gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68]
 gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410]
 gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68]
          Length = 460

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           NN +NIRK   +TQ +     G ++S+I +LE  +S  +I  +  +A  LD P+  L+
Sbjct: 208 NNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 265


>gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC
          3502]
 gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 181

 Score = 42.0 bits (97), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 181

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 216

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 35/58 (60%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R +R++  LT  E+  R G +++ +S++E  +++ ++  + +LA  LD P+  L +
Sbjct: 36 NVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSLSTLALLAKGLDVPVTSLFR 93


>gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
          Length = 113

 Score = 41.6 bits (96), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F    + +RK+A LTQ E+  R G  QS  ++ E GK     +N++ +A  LD  +
Sbjct: 1  MAFAERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSI 58


>gi|330897368|gb|EGH28787.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 286

 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 30/56 (53%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           RK D      A   +RM F +  +  R+ AKL Q E+  R G  Q+ IS+LE GKS
Sbjct: 51  RKTDLQGYGSARNTQRMEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKS 106


>gi|77919382|ref|YP_357197.1| helix-turn-helix transcriptional regulator [Pelobacter carbinolicus
           DSM 2380]
 gi|77545465|gb|ABA89027.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM
           2380]
          Length = 124

 Score = 41.6 bits (96), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 35  LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           LTQ+E+ +R G ++ ++S++E+GK    ++ +  +A  LD PL
Sbjct: 77  LTQQELADRAGISKPYLSQIESGKRQGTVETLAAIARALDVPL 119


>gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 86

 Score = 41.6 bits (96), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RKE  LTQ+ + +RTG  +++I+ +ETGK  I++ N+  LA  L   L  L K
Sbjct: 23 RKELNLTQENLAHRTGLDRTYIANIETGKINISLRNIEKLAKGLSISLSDLFK 75


>gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b]
          Length = 150

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +RKE KLTQKE+       QS IS  E+ K   ++D M+ +A   D P+ +L+
Sbjct: 4  FGDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQELI 63


>gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC
          15579]
 gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC
          15579]
          Length = 181

 Score = 41.6 bits (96), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 35/56 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 10 RNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|90425389|ref|YP_533759.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisB18]
 gi|90107403|gb|ABD89440.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisB18]
          Length = 84

 Score = 41.6 bits (96), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +RKE   TQ+     +GF Q ++S LE GK    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLIQP 68


>gi|293603331|ref|ZP_06685759.1| type I restriction-modification system S subunit [Achromobacter
          piechaudii ATCC 43553]
 gi|292818241|gb|EFF77294.1| type I restriction-modification system S subunit [Achromobacter
          piechaudii ATCC 43553]
          Length = 85

 Score = 41.6 bits (96), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +++F  N R IRKE +LTQ+++  R G   +++S +E G+  ++I N+  +A  L   + 
Sbjct: 21 QVLFAANMRRIRKEKQLTQEQVAERAGLHPNYVSSVERGERNLSIANIARIAAALGVTMA 80

Query: 79 KLLKP 83
          +L+ P
Sbjct: 81 ELVTP 85


>gi|115526032|ref|YP_782943.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115519979|gb|ABJ07963.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 84

 Score = 41.2 bits (95), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +RKE   TQ+     +GF Q ++S LE GK    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLIQP 68


>gi|53718395|ref|YP_107381.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52208809|emb|CAH34748.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
          Length = 102

 Score = 41.2 bits (95), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            A LR R+    N + IR    ++Q+E+ +R G  +++IS++E   + +++DN+ +LA 
Sbjct: 8  GQAALRNRL--SRNLKRIRAAQNISQEELGDRAGLHRTYISQVERTVTNVSLDNIYLLAE 65

Query: 72 TLDTPLWKLL 81
           L     +LL
Sbjct: 66 ALGVDPAELL 75


>gi|284044649|ref|YP_003394989.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283948870|gb|ADB51614.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 80

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 39/72 (54%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +++ + RER       R +R    L Q+E+    G  +++++ LE+G++  + D ++ +A
Sbjct: 1  MAEPLHRERRALAIAVRELRARRALKQEEVGEAAGLGRNYLTTLESGRTNPSFDALVRIA 60

Query: 71 HTLDTPLWKLLK 82
            L  PL +L +
Sbjct: 61 SGLGVPLSELTR 72


>gi|302880116|ref|YP_003848680.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302582905|gb|ADL56916.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 73

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 36/64 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F  N R  R   + +Q+++   +G  ++++  +E G+  I+IDNM  LA+ +   L 
Sbjct: 10 RLRFSKNLREARLRREWSQEDLAEESGLHRTYVGSVERGERNISIDNMECLANAVGVELI 69

Query: 79 KLLK 82
           LLK
Sbjct: 70 DLLK 73


>gi|261819878|ref|YP_003257984.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261603891|gb|ACX86377.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 103

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           + + R  R     +Q+E+  R+G  QS IS++E+G   + + ++I LA  LD  L+
Sbjct: 8  ILESLREARARKGFSQRELSARSGVPQSHISKIESGGVDLRVSSLIALARVLDLELF 64


>gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 108

 Score = 41.2 bits (95), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +++R+E KLTQ++I +  G  +S IS  E+GK +++ +N+I  A   D  +  +
Sbjct: 3  MFGQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYI 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
 gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
          Length = 115

 Score = 41.2 bits (95), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +RK   LTQ+++    G ++S+ISE+E+GK   +   +   AHT++ P+  L++
Sbjct: 5  LKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIE 61


>gi|298717105|ref|YP_003729747.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361294|gb|ADI78075.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
          vagans C9-1]
          Length = 182

 Score = 41.2 bits (95), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N     R+ + L+  E+  R G A+S +S+LE G     I+ +  L  TL+ P  +L
Sbjct: 7  IIANALVRERQRSGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|212640061|ref|YP_002316581.1| putative xre family transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212561541|gb|ACJ34596.1| Predicted transcriptional regulator, xre family [Anoxybacillus
          flavithermus WK1]
          Length = 81

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN R+IR    L+Q+E+   +G  +++I  +E G+  I I N+I +A+ L+  +  L
Sbjct: 13 IIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIKIANALEVRVQDL 72

Query: 81 L 81
          L
Sbjct: 73 L 73


>gi|39935312|ref|NP_947588.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          CGA009]
 gi|39649164|emb|CAE27684.1| possible transcriptional regulator, XRE family [Rhodopseudomonas
          palustris CGA009]
          Length = 81

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N RN R+  +L+Q+E+ +R    +++IS LE      +ID +  LAH L     
Sbjct: 4  REVLALNLRNCRQAQELSQEELAHRAEIDRTYISSLERCVYAASIDVLDRLAHVLGVEAA 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 DLLR 67


>gi|242278893|ref|YP_002991022.1| XRE family transcriptional regulator [Desulfovibrio salexigens
          DSM 2638]
 gi|242121787|gb|ACS79483.1| transcriptional regulator, XRE family [Desulfovibrio salexigens
          DSM 2638]
          Length = 107

 Score = 41.2 bits (95), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R+IRK+  LTQ ++ N +     +ISE+E G S + +D +  +A+ L  P+  +L
Sbjct: 10 NKIRSIRKKRGLTQAQLGNESDLNDKYISEIERGSSKLTVDALNKIANGLKVPVKDIL 67


>gi|302518782|ref|ZP_07271124.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302427677|gb|EFK99492.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 77

 Score = 41.2 bits (95), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L +R    +  R  R EA +TQ+ +  RTG  +  I   E+G  +  +D+++++AH L 
Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIAHALG 69

Query: 75 TPLWKLLK 82
            L  L+ 
Sbjct: 70 RSLADLIS 77


>gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 68

 Score = 41.2 bits (95), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + +R+E  LTQ+ + +R+G +Q ++S LE GK    I  +  ++  L     +LL+P
Sbjct: 5  NLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLELLRP 63


>gi|318061628|ref|ZP_07980349.1| hypothetical protein SSA3_27058 [Streptomyces sp. SA3_actG]
          Length = 77

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L +R    +  R  R EA +TQ+ +  RTG  +  I   E+G  +  +D+++++A  L 
Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIARALG 69

Query: 75 TPLWKLLK 82
           PL  L+ 
Sbjct: 70 RPLADLVS 77


>gi|325678958|ref|ZP_08158556.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109462|gb|EGC03680.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 181

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R    E  LTQ E+  RTG ++S+IS+  +GK     D +  LA  L T    LL
Sbjct: 4  FAENLRAAMAERSLTQAELSKRTGISKSFISQYLSGKFKPRDDKLSALAQALGTTKGALL 63


>gi|75675038|ref|YP_317459.1| XRE family transcriptional regulator [Nitrobacter winogradskyi
          Nb-255]
 gi|74419908|gb|ABA04107.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi
          Nb-255]
          Length = 71

 Score = 41.2 bits (95), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R + KLTQ+E+  R+G +  ++  +E G  + ++  +  +A  LD     L
Sbjct: 6  VMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSVLGKVAVALDVDPCDL 65

Query: 81 LKP 83
          ++P
Sbjct: 66 IRP 68


>gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 188

 Score = 41.2 bits (95), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R  R+ A L+  E+  R G A+S +S+LE+G    +++ +  LA  L  P  +L+
Sbjct: 14 IAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWALAVALGVPFSRLV 73

Query: 82 KP 83
           P
Sbjct: 74 DP 75


>gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426]
 gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 180

 Score = 40.8 bits (94), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 35/51 (68%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+IRK+  LT KE+  +TG + S++S++E G +++ I ++  +A  L+ P+
Sbjct: 9  RDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPI 59


>gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 108

 Score = 40.8 bits (94), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R++R   K+TQ+E+  RT  +  +IS++E     I+++  + +   L+ PL     P
Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVPLSDFFLP 69


>gi|300115620|ref|YP_003762194.1| XRE family transcriptional regulator [Nitrosococcus watsoni
          C-113]
 gi|299541562|gb|ADJ29873.1| transcriptional regulator, XRE family [Nitrosococcus watsonii
          C-113]
          Length = 104

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
          N  RN RK+   TQKE+  ++G AQ+ IS LE GKS  + ID++  LA      +  LL
Sbjct: 4  NIVRNRRKQLGWTQKELAEKSGVAQAQISRLEAGKSYNVTIDSLRNLAWAFGCSVIDLL 62


>gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis]
 gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 120

 Score = 40.8 bits (94), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  R  R+   L Q E+  + G   S IS  ETG    + DN+ ILA +LD     L
Sbjct: 14 VFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLRILADSLDVTTDYL 73

Query: 81 L 81
          L
Sbjct: 74 L 74


>gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM
          15053]
 gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM
          15053]
          Length = 134

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P +  AI+ E++ F    +  R  A LTQ+E+  +   + S+IS LE GK   +I  +++
Sbjct: 17 PKVKGAIMEEKIGF--RVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLM 74

Query: 69 LAHTLDTPLWKLLK 82
          LA  ++  L  LL+
Sbjct: 75 LADIMNVGLEDLLR 88


>gi|119383973|ref|YP_915029.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119373740|gb|ABL69333.1| putative transcriptional regulator, XRE family [Paracoccus
          denitrificans PD1222]
          Length = 85

 Score = 40.8 bits (94), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          + +    R  RK  +L+Q+E+  R G +  +IS LE+GK   ++  M  LA  LDT L  
Sbjct: 14 LAYARVLRRHRKNMELSQEELAFRAGLSMRYISLLESGKHQPSLGTMKALADALDTSLTA 73

Query: 80 LL 81
          ++
Sbjct: 74 MI 75


>gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium
          acetobutylicum ATCC 824]
 gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium
          acetobutylicum ATCC 824]
 gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium
          acetobutylicum EA 2018]
          Length = 123

 Score = 40.8 bits (94), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 35/56 (62%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N + +RKE  LTQ+++   TG + S IS+LE GK T +I+ +  L++  +  + +L
Sbjct: 5  NLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDEL 60


>gi|307704202|ref|ZP_07641125.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307622233|gb|EFO01247.1| helix-turn-helix family protein [Streptococcus mitis SK597]
          Length = 108

 Score = 40.8 bits (94), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R++R   K+TQ+E+  RT  +  +IS++E     I+++  + +   L+ PL     P
Sbjct: 10 NQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALEVPLSDFFLP 69


>gi|322421833|ref|YP_004201056.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320128220|gb|ADW15780.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 124

 Score = 40.8 bits (94), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 27/49 (55%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R  R +  LTQK++  RTG AQ  ISE+E GK  I  D    LA  L+
Sbjct: 69  IRGARGKEGLTQKQLAQRTGIAQHHISEMENGKRPIGKDTARRLADALN 117


>gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon
          472 str. F0295]
 gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon
          472 str. F0295]
          Length = 71

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L ER        ++R+EAKL+Q E+  + G  +  IS +E+G+ ++ +D +  +A  L  
Sbjct: 7  LAERERIGQKIASMRQEAKLSQAELGKKCGLERFHISRIESGRHSVGLDTLAAIARALGK 66

Query: 76 PL 77
           L
Sbjct: 67 TL 68


>gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 219

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+   D+     AI R       N R +R++  LT  E+  R G +++ +S++E  +++ 
Sbjct: 23 PQEPVDDTEFEAAIGR-------NVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSC 75

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          ++  + +LA   D P+  L +
Sbjct: 76 SLSTLALLAKGFDVPVTTLFR 96


>gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
 gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
          Length = 99

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 23 VNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL---- 77
          + NF RN R    L++KE+ +    +Q  IS  E G ST++I+N++IL + L+ P     
Sbjct: 7  IGNFIRNARVSKGLSEKELASLISVSQQQISRYERGISTLSIENILILLNALNIPFDEFS 66

Query: 78 WKLLKP 83
           K++KP
Sbjct: 67 NKIIKP 72


>gi|153009785|ref|YP_001371000.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151561673|gb|ABS15171.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 72

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I  +N   IR E  LTQ+++   +GF+Q ++S LE G+    I  +  L+  L+T  +
Sbjct: 2  RKIVGDNLTWIRIEKGLTQEQVAEGSGFSQQYLSSLERGQYNPTIITIYELSLALETTYF 61

Query: 79 KLLKP 83
           L+ P
Sbjct: 62 SLILP 66


>gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 76

 Score = 40.8 bits (94), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R    ++Q+   +R GFA++++S +ETG +  +I+ + +LA  L   +  L 
Sbjct: 14 FGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLADALGVSISALF 73

Query: 82 K 82
          +
Sbjct: 74 E 74


>gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
 gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 187

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R  RKEA LT +E+  ++G +Q ++S+ E G +  ++ N+  LA +L T    LL 
Sbjct: 17 RTARKEAGLTLREVAVKSGLSQPFLSQTENGHAVPSVMNLHRLAQSLGTTAHSLLA 72


>gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6]
 gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6]
          Length = 93

 Score = 40.8 bits (94), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L+D + + R       R +R  A L+Q ++ +R G     IS  E G   I+ID    +A
Sbjct: 20 LADQVQQHRWDVGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIA 79

Query: 71 HTLDTPLWKLLK 82
            L  P W+L +
Sbjct: 80 TALGQPSWRLFR 91


>gi|318057395|ref|ZP_07976118.1| hypothetical protein SSA3_05613 [Streptomyces sp. SA3_actG]
 gi|318076536|ref|ZP_07983868.1| hypothetical protein SSA3_07397 [Streptomyces sp. SA3_actF]
          Length = 77

 Score = 40.8 bits (94), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L +R    +  R  R EA +TQ+ +  RTG  +  I   E G  +  +D+++++A  L 
Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTEGGTHSTLLDHLLLIARALG 69

Query: 75 TPLWKLLK 82
           PL  L++
Sbjct: 70 RPLADLVR 77


>gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D
          str. JGS1721]
 gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D
          str. JGS1721]
          Length = 342

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +N RKE KLTQ ++  R   ++S IS  E G    +I  +I LA+ ++  +  L
Sbjct: 5  VFANNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSIDNL 64

Query: 81 L 81
           
Sbjct: 65 F 65


>gi|116328428|ref|YP_798148.1| transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116331157|ref|YP_800875.1| transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116121172|gb|ABJ79215.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
          serovar Hardjo-bovis L550]
 gi|116124846|gb|ABJ76117.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
          serovar Hardjo-bovis JB197]
          Length = 102

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          RE  IF  N    RK A LTQ EI  R G  QS+IS++E+G+  +++
Sbjct: 8  REAKIFCKNLIAARKSADLTQLEIAKRLGEPQSYISKIESGERRLDV 54


>gi|182414108|ref|YP_001819174.1| XRE family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841322|gb|ACB75574.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1]
          Length = 96

 Score = 40.4 bits (93), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79
          I   N + +R++ +LTQ+++  R G    +   +E G    + +  +  LA  L  P W+
Sbjct: 15 ILRKNLKRLREKQRLTQQDLAERAGIDYKYAQRIEAGHWPGLQLKTIEKLAEALGVPAWR 74

Query: 80 LLKP 83
          LLKP
Sbjct: 75 LLKP 78


>gi|255316571|ref|ZP_05358154.1| hypothetical protein CdifQCD-7_19592 [Clostridium difficile
          QCD-76w55]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          E  L +AI  E+  F+ N  N RK+  +TQKEI  +TG  Q  IS +ETG
Sbjct: 28 ERMLVNAIHVEKD-FIQNLVNFRKKQNITQKEIAEKTGLTQQAISGIETG 76


>gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora
          erythraea NRRL 2338]
 gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea]
 gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain
          [Saccharopolyspora erythraea NRRL 2338]
          Length = 196

 Score = 40.4 bits (93), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R    L+  E+  R    +  +SELE G+    ++ +  LA  L+ PL +L
Sbjct: 6  VVGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGEL 65

Query: 81 L 81
          L
Sbjct: 66 L 66


>gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 186

 Score = 40.4 bits (93), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R  R  A L+  E+  R G A+S +S+LE G     ++ +  L+  L+ P   L
Sbjct: 11 VIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGNPGVETLWALSVALNVPFATL 70

Query: 81 LKP 83
          ++P
Sbjct: 71 VEP 73


>gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 72

 Score = 40.4 bits (93), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N + IR+  +LTQ+++ + +GF+Q +IS LE G+    I  +  LA  L     
Sbjct: 4  RKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVSHM 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|127512198|ref|YP_001093395.1| XRE family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637493|gb|ABO23136.1| transcriptional regulator, XRE family [Shewanella loihica PV-4]
          Length = 127

 Score = 40.4 bits (93), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +IR+E  + Q ++  R G +Q+  S LE GK+T +ID + ++A  L     +L +
Sbjct: 20 SIRREKGIEQSDVAARMGLSQASYSRLEGGKATYSIDQVFLVAEALQVEPAELFQ 74


>gi|11094394|gb|AAG29617.1|AF217235_20 Orf20 [Staphylococcus aureus]
          Length = 267

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 19 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 72


>gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 76

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +   IF    +++R+E+ L Q+EI    G  Q+  S+ ETGKS  N++N++ LA    T
Sbjct: 6  FKSNFIFPKRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKT 65


>gi|271969477|ref|YP_003343673.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270512652|gb|ACZ90930.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 92

 Score = 40.4 bits (93), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 31/67 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE ++      N R E  L+Q E+  R G  Q  +S LETG  T  +  +  LA  LD  
Sbjct: 22 REALLLGQQVYNRRTELGLSQAELAERAGMTQPQVSRLETGGVTPTLALLRRLAKALDAE 81

Query: 77 LWKLLKP 83
          L    KP
Sbjct: 82 LNVTFKP 88


>gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
 gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica
          serovar Paratyphi A]
 gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica]
 gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
          Length = 78

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R R+IF +N R +R+   L+Q+ + +  G  +++I  +E  +  I+IDN+  +A  L   
Sbjct: 9  RARVIFAHNIRKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDRIASALGVS 68

Query: 77 LWKLLK 82
             LL+
Sbjct: 69 PSSLLE 74


>gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum
          H04402 065]
          Length = 181

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +   L+ P+    K
Sbjct: 10 RNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYFFK 65


>gi|77543203|gb|ABA87016.1| hypothetical protein [Vibrio cholerae]
 gi|259156517|gb|ACV96461.1| transcriptional regulator, XRE family [Vibrio cholerae Mex1]
          Length = 106

 Score = 40.4 bits (93), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           + + R  R     +Q+E+  R+G  QS IS++E+G   + I ++I LA  LD  L 
Sbjct: 8  ILKSLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLELL 64


>gi|12746568|gb|AAK07492.1| hypothetical protein [IncJ plasmid R391]
 gi|20095202|gb|AAM08068.1| hypothetical protein [Providencia rettgeri]
 gi|262318118|dbj|BAI48444.1| hypothetical protein [Proteus mirabilis]
          Length = 106

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           + + R  R     +Q+E+  R+G  QS IS++E+G   + I ++I LA  LD  L 
Sbjct: 8  ILESLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLELL 64


>gi|82750104|ref|YP_415845.1| pathogenicity island protein [Staphylococcus aureus RF122]
 gi|82655635|emb|CAI80031.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus
          RF122]
          Length = 261

 Score = 40.4 bits (93), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 13 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66


>gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens
          DSM 30120]
 gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens
          DSM 30120]
          Length = 99

 Score = 40.4 bits (93), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 23 VNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL---- 77
          + NF RN R    L++KE+ +    +Q  +S  E G ST++I N++IL + L+ P     
Sbjct: 7  IGNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIPFDEFS 66

Query: 78 WKLLKP 83
           K++KP
Sbjct: 67 HKIIKP 72


>gi|283469697|emb|CAQ48908.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus
          subsp. aureus ST398]
 gi|298693729|gb|ADI96951.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus
          ED133]
          Length = 261

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 13 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66


>gi|16762390|ref|NP_458007.1| hypothetical protein STY3832 [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|29143878|ref|NP_807220.1| hypothetical protein t3577 [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|25512349|pir||AD0945 probable DNA-binding protein STY3832 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504694|emb|CAD09582.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29139514|gb|AAO71080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
          Length = 188

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 22 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 75


>gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
 gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
          Length = 224

 Score = 40.4 bits (93), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINI 63
          N + IRK  K+TQKE+  ++G  QS IS+LETG  KST +I
Sbjct: 11 NLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAKSTGSI 51


>gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
 gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
          Length = 77

 Score = 40.4 bits (93), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N   IR E  LTQ++  + +GF+Q ++S LE GK    I  +  LA  L+    
Sbjct: 4  RRLVGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|332141631|ref|YP_004427369.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|332143443|ref|YP_004429181.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327551653|gb|AEA98371.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327553465|gb|AEB00184.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
          Length = 106

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           + + R  R     +Q+E+  R+G  QS IS++E+G   + I ++I LA  LD  L 
Sbjct: 8  ILESLREARVRKGFSQRELSARSGVPQSHISKIESGGVDLRISSLIALARVLDLELL 64


>gi|84684082|ref|ZP_01011984.1| hypothetical protein 1099457000262_RB2654_16576 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84667835|gb|EAQ14303.1| hypothetical protein RB2654_16576 [Rhodobacterales bacterium
          HTCC2654]
          Length = 97

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++R++   TQ+E+ +R G ++S+ SE+E+GK   N   +   A   + P ++L+
Sbjct: 5  LRSLREKRGWTQEEVASRAGMSKSFYSEIESGKKAANSQRIRKFAEVFEVPAFELI 60


>gi|291619732|ref|YP_003522474.1| YdcN [Pantoea ananatis LMG 20103]
 gi|291154762|gb|ADD79346.1| YdcN [Pantoea ananatis LMG 20103]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+ A LT  E+  R G A+S +S+LE G     I+ +  L   L+ P  +L++P
Sbjct: 17 RQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARLMEP 70


>gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
           14365]
          Length = 198

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R+ DE H S            N R +RK   LT K++  RT  + S +S++E  +S+ ++
Sbjct: 127 RREDELHAS---------IGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASV 177

Query: 64  DNMIILAHTLDTPLWKLL 81
            ++  +A  LD P+ +L 
Sbjct: 178 SSLFKVATALDVPITELF 195


>gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 104

 Score = 40.4 bits (93), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  RK A LTQ E+  +TGF    IS  ETG  T +++ + +LA  L   L
Sbjct: 11 KRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKL 61


>gi|327396552|dbj|BAK13973.1| putative HTH-type transcriptional regulator YdcN [Pantoea
          ananatis AJ13355]
          Length = 183

 Score = 40.4 bits (93), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+ A LT  E+  R G A+S +S+LE G     I+ +  L   L+ P  +L++P
Sbjct: 17 RQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARLMEP 70


>gi|297620902|ref|YP_003709039.1| putative transcriptional regulator [Waddlia chondrophila WSU
          86-1044]
 gi|297376203|gb|ADI38033.1| putative transcriptional regulator [Waddlia chondrophila WSU
          86-1044]
          Length = 76

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +K+ +P L D        F    RN+R    LTQ+++  R GF  ++I  +E  +  
Sbjct: 1  MTLKKKKDPILVD--------FAAKVRNMRHSIPLTQEQLAERAGFHVNYIGGIERAERN 52

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           ++ ++  L+  L  PL +LL
Sbjct: 53 PSLTSLCSLSKALGCPLKELL 73


>gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
 gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
          Length = 72

 Score = 40.4 bits (93), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++RK+A ++Q+E+ +R G  ++++  +E G+   ++ N+  ++  L  P+  L 
Sbjct: 11 FGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLF 70

Query: 82 K 82
          K
Sbjct: 71 K 71


>gi|307578025|gb|ADN53644.1| Stl [Staphylococcus aureus]
          Length = 278

 Score = 40.0 bits (92), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 30 KTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 83


>gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum
          lavamentivorans DS-1]
 gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum
          lavamentivorans DS-1]
          Length = 72

 Score = 40.0 bits (92), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           N R IR +  LTQ++    +GF+Q +IS LE G+    +  +  LA  L      LL+P
Sbjct: 9  GNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHLDLLRP 68


>gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131]
 gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131]
          Length = 78

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RK   L+  E+ N  G +Q  IS  E G+  INI+N+  LA+ LDT +
Sbjct: 16 RKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEM 63


>gi|213426090|ref|ZP_03358840.1| hypothetical protein SentesTyphi_10843 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213582495|ref|ZP_03364321.1| hypothetical protein SentesTyph_15373 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213612462|ref|ZP_03370288.1| hypothetical protein SentesTyp_08142 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
 gi|213647358|ref|ZP_03377411.1| hypothetical protein SentesTy_08670 [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213857431|ref|ZP_03384402.1| hypothetical protein SentesT_19934 [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 182

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|24213211|ref|NP_710692.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45658873|ref|YP_002959.1| hypothetical protein LIC13047 [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|24193932|gb|AAN47710.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45602118|gb|AAS71596.1| conserved hypothetical protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 98

 Score = 40.0 bits (92), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          RE  IF  N    RK +KLTQ E+  R G  QS+IS++E+G+  +++
Sbjct: 8  REAKIFCKNLIAARKNSKLTQLEVAKRLGEPQSYISKIESGERRLDV 54


>gi|148254764|ref|YP_001239349.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406937|gb|ABQ35443.1| putative transcriptional regulatory protein [Bradyrhizobium sp.
          BTAi1]
          Length = 87

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N +++R+   ++Q+E+ +R    +++IS +E  ++ ++ID +  LA  L     
Sbjct: 6  RDILATNLKHLRRTKGVSQEELAHRAEIDRTYISMIERSRNAVSIDVLAALAGGLGVEPA 65

Query: 79 KLLKP 83
           LLKP
Sbjct: 66 DLLKP 70


>gi|213160859|ref|ZP_03346569.1| hypothetical protein Salmoneentericaenterica_12733 [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 181

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 15 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 68


>gi|319426969|gb|ADV55043.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 108

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           + + R+ R     +Q+E+  R+G  QS IS++E+G   + + ++I LA  LD  L+
Sbjct: 8  ILGSLRDARIRKGFSQRELSARSGVPQSHISKIESGDVDLRMSSLIALARVLDLELF 64


>gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 107

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + +RK    +Q E+  + G     + + E GKS I +D +I +A  LD PL  +L
Sbjct: 8  KRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLSAIL 62


>gi|283834409|ref|ZP_06354150.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220]
 gi|291069953|gb|EFE08062.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220]
          Length = 153

 Score = 40.0 bits (92), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + R+IR+E  +TQ EI  + G   +   ++E GKST++++N++     +D    K+
Sbjct: 8  ILAFHMRDIREEKGVTQAEIAEKLGMTSAGWGKVENGKSTLSVENLMKFCKLVDIDAQKI 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|158520953|ref|YP_001528823.1| XRE family transcriptional regulator [Desulfococcus oleovorans
          Hxd3]
 gi|158509779|gb|ABW66746.1| transcriptional regulator, XRE family [Desulfococcus oleovorans
          Hxd3]
          Length = 84

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  + IRK    +Q+E+   +G+ +++IS LE GK + ++  +  LA TL     +L
Sbjct: 17 LFGNALKQIRKRKGFSQEELGLESGYHRTYISLLERGKKSPSLKTIFRLAETLQVKPSEL 76

Query: 81 LK 82
          +K
Sbjct: 77 IK 78


>gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005]
 gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005]
          Length = 66

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLLK 82
          +R+E K++Q+E+ N++G +++ IS +ET KS T+ +  +  LA  LD P+    K
Sbjct: 9  LREEKKMSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPIGYFFK 63


>gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 190

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N R  RK  KLT KE+  RTG +  +IS++E  ++  ++ ++  +A   D P++ L+
Sbjct: 4  TNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVLM 61


>gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 187

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R IRKE K TQ E+    GF +S +S++E G +   +  ++ +A  L   +  LL+P
Sbjct: 8  RLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSDLLEP 64


>gi|291521949|emb|CBK80242.1| Helix-turn-helix [Coprococcus catus GD/7]
          Length = 80

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++R+ +  N +  RK ++++Q+ + +  G  +++IS+LE  K    +  M++LA  L+ 
Sbjct: 15 MKQRLSY--NIKRYRKLSRVSQQALADMCGLHRTYISDLENAKCNPTLSVMMVLADCLNV 72

Query: 76 PLWKLLK 82
           L  LLK
Sbjct: 73 QLEDLLK 79


>gi|304436877|ref|ZP_07396841.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon
          149 str. 67H29BP]
 gi|304370076|gb|EFM23737.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon
          149 str. 67H29BP]
          Length = 86

 Score = 40.0 bits (92), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +IF ++ R IRKE K TQKE     G  +    + E GK+    D +I LA   D  L  
Sbjct: 2  VIFKDHLRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLDY 61

Query: 80 LL 81
          L+
Sbjct: 62 LV 63


>gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 75

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 16 LRERMIFVNNFRNIRKE-AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          LR+R  F    R +RKE   L+Q+   ++ GFA+S+   +ETGK+  ++D +  +A  L 
Sbjct: 7  LRQR--FGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLG 64

Query: 75 TPLWKLLK 82
            +  L +
Sbjct: 65 VEVSALFE 72


>gi|300724905|ref|YP_003714230.1| hypothetical protein XNC1_4123 [Xenorhabdus nematophila ATCC
          19061]
 gi|297631447|emb|CBJ92148.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC
          19061]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L +    +N   ++R EAKLTQ+++ +R G  +S IS LE GKS   +  ++  A
Sbjct: 24 LNDEFELINTLLSMRTEAKLTQQQVADRMGTKESNISRLEKGKSNPTLSTLVNYA 78


>gi|156935962|ref|YP_001439878.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156534216|gb|ABU79042.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R  A L+  E+  R G A+S +S+LE G    +++ +  L   LD P  +L++P
Sbjct: 16 RTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLMEP 69


>gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 179

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 34/50 (68%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           RN+RK   LTQ+E+  RT  ++ +IS++E+G+S+ ++++ + +   L T
Sbjct: 7  LRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGT 56


>gi|161505447|ref|YP_001572559.1| hypothetical protein SARI_03605 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866794|gb|ABX23417.1| hypothetical protein SARI_03605 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 38 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLLEP 91


>gi|303246008|ref|ZP_07332290.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492791|gb|EFL52659.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 87

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++RKEA L Q E+  R G+ QS++S+ E+G+  I++  +  +   L   L + +
Sbjct: 28 SLRKEAGLRQTELAARLGYPQSYVSKYESGQRRIDLIELEAICQALGITLLEFV 81


>gi|153954630|ref|YP_001395395.1| hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555]
 gi|146347488|gb|EDK34024.1| Hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555]
          Length = 71

 Score = 39.7 bits (91), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81
          +N + IR+   +T+  +  ++G +QS+I E+E+GK T  +ID ++ LA  L+  + +LL
Sbjct: 4  DNLKKIREIKGITKYRLSKKSGISQSYICEIESGKYTNPSIDIVLKLAEALEISISELL 62


>gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
 gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
          Length = 181

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+    G   S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|217971592|ref|YP_002356343.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|217496727|gb|ACK44920.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
          Length = 129

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N RKE  + Q  + +  G +Q+  S LE+GKST ++D +   A  L+ P  +L 
Sbjct: 18 NKRKEFGIEQSVMADCMGLSQASYSRLESGKSTFSVDQLFECAQALNIPAAELF 71


>gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 179

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 35/51 (68%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R++RK+  LT KE+  +TG + S++S++E G +++ I ++  +A  L+ P+
Sbjct: 9  RDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPI 59


>gi|295837564|ref|ZP_06824497.1| DNA-binding protein [Streptomyces sp. SPB74]
 gi|197698354|gb|EDY45287.1| DNA-binding protein [Streptomyces sp. SPB74]
          Length = 280

 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R +R EA L  K++  R G+ +S IS LETGK T  ID++   A   D
Sbjct: 17 LRELRTEAGLQGKDLAARLGWQRSKISRLETGKQTPTIDDLAAWAQATD 65


>gi|187934446|ref|YP_001886145.1| MerR family transcriptional regulator [Clostridium botulinum B
          str. Eklund 17B]
 gi|187722599|gb|ACD23820.1| transcriptional regulator, MerR family [Clostridium botulinum B
          str. Eklund 17B]
          Length = 118

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          FRN   +  LT KE+   TG + S+IS++E  +   +IDN+ ILA  LD  + +LL
Sbjct: 10 FRN---KKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQLL 62


>gi|316932216|ref|YP_004107198.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599930|gb|ADU42465.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 73

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R + KLTQ+E+ +R G +  ++  +E G  + ++  +  +A  L+    +L
Sbjct: 6  VMARNLRRLRHDKKLTQEELADRAGLSMRYVGAIERGDVSASVTVLGQIADALEIEPGEL 65

Query: 81 LK 82
          LK
Sbjct: 66 LK 67


>gi|260595940|ref|YP_003208511.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032]
 gi|260215117|emb|CBA26887.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R  A L+  E+  R G A+S +S+LE G    +++ +  L   LD P  +L++P
Sbjct: 16 RTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLMEP 69


>gi|58616432|ref|YP_195561.1| TrbA protein of DNA transfer system [Azoarcus sp. EbN1]
 gi|56315894|emb|CAI10537.1| TrbA protein of DNA transfer system [Aromatoleum aromaticum EbN1]
          Length = 120

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   +  E  +T++E+ +++G + S++S++ TGK   ++  M  +A  L TPL  L
Sbjct: 5  IFFTNMLRLLDELHMTKQELADKSGVSISFLSDITTGKGNPSLKVMEDIAKALQTPLPLL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402]
          Length = 93

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 16 LRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          LRE+  + +N  R  R++A L+Q E+  R   +Q+ I+ +ETGK T ++D ++ + H L+
Sbjct: 5  LREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALN 64


>gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
          Length = 148

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 17 RERMIFVN-NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R +M+ +    R  R +  L+Q +I  RTG  + ++S +E G +  ++D +  +A  LD 
Sbjct: 30 RAKMMKIGMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDL 89

Query: 76 PLWKLL 81
          PL +  
Sbjct: 90 PLAQFF 95


>gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15]
 gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15]
          Length = 142

 Score = 39.7 bits (91), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  RKE K+TQK +  +   ++S++ +LE+G+   ++D +  +A  LD  +  LL
Sbjct: 6  NIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINLLL 62


>gi|333031050|ref|ZP_08459111.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011]
 gi|332741647|gb|EGJ72129.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011]
          Length = 105

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          FR+ RK  KLTQKE+ ++ G  +S+I  +E G + + + + I +A  L   L
Sbjct: 47 FRDRRKTLKLTQKELADKVGKERSYIGRIEKGSTDMQLSSFISIARALGLDL 98


>gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa
          SC2]
 gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa
          SC2]
          Length = 179

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R  RK   L+ ++I  RTG +Q ++S++E  K++ +I  +  +A+ L+ PL  LL
Sbjct: 6  NIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFLL 62


>gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 200

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R++  +T  E+  RTG ++S +S LE+G+    ++ +++LA   D PL  L+
Sbjct: 16 LRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDLV 71


>gi|157147315|ref|YP_001454634.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895]
 gi|157084520|gb|ABV14198.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895]
          Length = 182

 Score = 39.7 bits (91), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARLLEP 69


>gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 60

 Score = 39.7 bits (91), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R+   LTQ E+ +RTG +Q  IS +E G+   +++ +  LA  LDT + +LL
Sbjct: 4  LKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVDQLL 59


>gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 200

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R  R E  ++  E+  R+G A+  +S+LE+G     I+ +  L++ L  P+  LL 
Sbjct: 17 NLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSALLS 74


>gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I
          [Thermococcus barophilus MP]
 gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I
          [Thermococcus barophilus MP]
          Length = 186

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
            R IRKE  +TQ+E+  R G  Q++I++LE+GK
Sbjct: 12 EIRRIRKELGITQEELAKRAGVTQAYIAKLESGK 45


>gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter
          propionicus DSM 2379]
 gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family
          [Pelobacter propionicus DSM 2379]
          Length = 368

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PR +++    S  + RE +   N+ +  R+E   +Q+E+  R G +++ +S +ETGK   
Sbjct: 6  PRERQNTVTHSIIMSREEIPLSNHIKKFREERGWSQQELAERAGLSRAGVSAIETGKLVP 65

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          +    + LA     P+ +L +
Sbjct: 66 STVAALALAKVFACPVEELFQ 86


>gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
 gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
          Length = 181

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+    G   S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|119385131|ref|YP_916187.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119374898|gb|ABL70491.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 75

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R +R E   +Q+ + +  G  ++++S +E  +  I+IDN+  +A       W
Sbjct: 10 RDIVARNMRRLRAERGWSQEYLAHECGLNRTYLSAVERSEQNISIDNLYRVAQGFGVESW 69

Query: 79 KLLK 82
           LLK
Sbjct: 70 TLLK 73


>gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 73

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +F  + R +R+E   +Q+E+  R G  ++++  +E G+  + ++N++ LA  L  
Sbjct: 7  KFLFGKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKALSV 63


>gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 171

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E  L+  E+  R G  +  +SE+E G     ++ +  L   LD PL  LL 
Sbjct: 8  GRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPLDVPLTALLG 66


>gi|163816219|ref|ZP_02207586.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC
          27759]
 gi|158448414|gb|EDP25409.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC
          27759]
          Length = 70

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 28/48 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RKE K TQ  I   TGF+ S+IS+LE GK+T  I   I + + L   +
Sbjct: 17 RKELKYTQAYIAEFTGFSVSFISDLERGKATAEIGKAITIINLLGMDI 64


>gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753]
 gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753]
          Length = 187

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +RK A +TQ+E+  R G  ++ IS+ ETG    ++  +  +A  L  P+ +LL
Sbjct: 4  DQIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELL 61


>gi|325971067|ref|YP_004247258.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324026305|gb|ADY13064.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 107

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N +  R++  LTQ ++  + G + S+++E+ET +   +   +  ++  LD P W  
Sbjct: 10 IFARNLKERRRKLSLTQAQLAEKIGVSTSFVTEIETSRKAPSFATIEKISAALDVPCWTF 69

Query: 81 L 81
           
Sbjct: 70 F 70


>gi|315648369|ref|ZP_07901468.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453]
 gi|329923099|ref|ZP_08278615.1| restriction-modification system control element Bcll
          [Paenibacillus sp. HGF5]
 gi|315276063|gb|EFU39409.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453]
 gi|328941872|gb|EGG38157.1| restriction-modification system control element Bcll
          [Paenibacillus sp. HGF5]
          Length = 78

 Score = 39.3 bits (90), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    +NIRKE K++Q+E+  R+   +++IS LE G     +++++ +A  LD    +L
Sbjct: 6  IFGQVLKNIRKEQKVSQEELAFRSNLDRTYISMLERGIHQPTLNSLLAIAAALDMKAAEL 65

Query: 81 L 81
          +
Sbjct: 66 V 66


>gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family
          [Staphylococcus hominis subsp. hominis C80]
 gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family
          [Staphylococcus hominis subsp. hominis C80]
          Length = 87

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          L+E  +F+NN  +  RKE K++Q+E+ +R    +  +S +E GK    I+  I +A  LD
Sbjct: 13 LKEAFLFMNNNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALD 72

Query: 75 TPLWKLL 81
            L KL 
Sbjct: 73 VDLNKLF 79


>gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 182

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R  A LT KE+  +TG + S+IS++E G S+  I ++  +A  L+ P+     P
Sbjct: 14 RTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSFFTP 67


>gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor
          [Sphingomonas wittichii RW1]
          Length = 201

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R+ RK  KLT  E+  R+  + S+IS  E GK+T +I +++ LA  LD  +  
Sbjct: 15 MSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDISY 74

Query: 80 LLKP 83
           L P
Sbjct: 75 FLAP 78


>gi|157961107|ref|YP_001501141.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
          700345]
 gi|157846107|gb|ABV86606.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
          700345]
          Length = 118

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             IRKE  + Q E+   TG +Q  +S LE GK+ I ID + ++   L 
Sbjct: 15 LEKIRKELGMEQSEVSVATGISQPVLSRLEKGKAMITIDQLFVICGALG 63


>gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2]
 gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2]
          Length = 196

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I     R+ RK  +LT  E+  R G +QS +S++E GK+  ++D +  L+   D PL
Sbjct: 14 IIGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVPL 70


>gi|300715480|ref|YP_003740283.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061316|emb|CAX58425.1| transcriptional regulator [Erwinia billingiae Eb661]
          Length = 182

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R  A L+  E+  R G A+S +S+LE+     +I+ +  L   L+ P  KL
Sbjct: 7  VIAASLARERTRAGLSLAEVARRAGIAKSTLSQLESANGNPSIETLWALCGALNIPFAKL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 16 LRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          LRE+  + +N  R  R++A L+Q E+  R   +Q+ I+ +ETGK T ++D ++ + H L+
Sbjct: 3  LREQQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALN 62


>gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
 gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
          Length = 180

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 34/51 (66%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R++R +  LT KE+  +TG + S++S++E G S++ I ++  +A  L+ P+
Sbjct: 9  RSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPI 59


>gi|296446597|ref|ZP_06888539.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gi|296255951|gb|EFH03036.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 118

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R  R+  +L+Q+E+ +R    +++IS +E    +  +D +  LA  L  P  
Sbjct: 4  RETLARNLRKYRRAQRLSQEELGHRAELDRTYISSIERCVYSATVDVVGRLADALGIPAL 63

Query: 79 KLLKP 83
          +LL+P
Sbjct: 64 ELLRP 68


>gi|238916522|ref|YP_002930039.1| hypothetical protein EUBELI_00579 [Eubacterium eligens ATCC
          27750]
 gi|238871882|gb|ACR71592.1| Hypothetical protein EUBELI_00579 [Eubacterium eligens ATCC
          27750]
          Length = 71

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 29/50 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          N  RN RKE K TQ  +   TG + S+IS++E GK T+ I  +I L   L
Sbjct: 11 NIIRNRRKELKYTQAFLSEYTGLSVSFISDVERGKPTVEIGKVIQLISIL 60


>gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
          Length = 80

 Score = 39.3 bits (90), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N RNIR +  +TQ+E+   TG  QS IS  E G     I  +  ++  L+ P+ KLL+
Sbjct: 6  NIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLLE 63


>gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia
           stuttgartiensis]
          Length = 209

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 29  IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +RK  K+TQK++ NRTG + S +S++E G+   +++ +  L+ +L+  L   L+
Sbjct: 145 LRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLSASLNVKLSYFLE 198


>gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016]
 gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 83

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N RNIR +  +TQ+E+   TG  QS IS  E G     I  +  ++  L+ P+ KLL+
Sbjct: 9  NIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLLE 66


>gi|16767308|ref|NP_462923.1| hypothetical protein STM4042A [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|56415888|ref|YP_152963.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197364817|ref|YP_002144454.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|207859233|ref|YP_002245884.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|16422606|gb|AAL22882.1| hypothetical protein STM4042A [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|56130145|gb|AAV79651.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197096294|emb|CAR61895.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|206711036|emb|CAR35406.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|261249159|emb|CBG27020.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267996333|gb|ACY91218.1| hypothetical protein STM14_4861 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301160550|emb|CBW20080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|332990871|gb|AEF09854.1| hypothetical protein STMUK_4027 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 188

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 22 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 75


>gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 149

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 34/55 (61%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +R +  LTQ+E+ N+    +  +S  ETG++T N+D + +LA TL  P+  LL+
Sbjct: 9  QLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLE 63


>gi|258591602|emb|CBE67903.1| conserved protein of unknown function [NC10 bacterium 'Dutch
          sediment']
          Length = 71

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +D +LR    F    R  R    ++Q+E+  R G  ++++  +E G+  I + N++  A 
Sbjct: 3  TDILLR----FGQKVRQRRLSLAISQEELAERAGVHRTYVGMIERGEKNITLRNIVKFAK 58

Query: 72 TLDTPLWKLLK 82
           LD P+  L+K
Sbjct: 59 ALDMPVHNLMK 69


>gi|62182502|ref|YP_218919.1| hypothetical protein SC3932 [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62130135|gb|AAX67838.1| hypothetical protein SCH_3932 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|320088451|emb|CBY98210.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|322716998|gb|EFZ08569.1| hypothetical protein SCA50_4196 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323132385|gb|ADX19815.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
          Length = 204

 Score = 39.3 bits (90), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 38 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 91


>gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56']
 gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 202

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 37/61 (60%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  +  RN+RK+  LT K++  RTG + S +S++E  +S+ +I ++  +A  L++ +  L
Sbjct: 139 VIGDTIRNLRKDKDLTLKQMARRTGLSVSLLSQIERAESSASISSLYKIAVALESRIQDL 198

Query: 81  L 81
            
Sbjct: 199 F 199


>gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 91

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N   +R+  KLTQ+E+  R+GF+Q ++S++E G     I  +  +A  L     
Sbjct: 4  RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 ALVEP 68


>gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 221

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER+I     R +R+ A LT  E+  R+G ++  +S++E   ++ ++  +  LA  LD P+
Sbjct: 33 ERLI-AAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLTTLARLADALDVPV 91

Query: 78 WKLLK 82
            L +
Sbjct: 92 TALFR 96


>gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24]
 gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171]
 gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24]
 gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171]
          Length = 289

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R IRK   L+Q E+ +  G  QS+IS +E G    +ID ++I+A+ L+ PL  LL+
Sbjct: 11 RRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65


>gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 112

 Score = 39.3 bits (90), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R IRK+   +Q+++  R     S++ ++E G+ +  +D +  +AH L  PL +L+
Sbjct: 11 NIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQCPLEQLV 67


>gi|283787426|ref|YP_003367291.1| DNA binding protein [Citrobacter rodentium ICC168]
 gi|282950880|emb|CBG90557.1| putative DNA binding protein [Citrobacter rodentium ICC168]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|315034706|gb|EFT46638.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315578681|gb|EFU90872.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 83

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R+RM    NF+  R++ KLTQKE+  +   ++ ++ +LE+G S+ +    +I+A     P
Sbjct: 6  RDRM--RTNFKMEREKLKLTQKELAEKLDLSEVYVRKLESGASSPSTKKAVIIAEFFGKP 63

Query: 77 LWKLL 81
          L  L 
Sbjct: 64 LDYLF 68


>gi|307151920|ref|YP_003887304.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306982148|gb|ADN14029.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 170

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          R+      RN+RK   +TQKE+  + G  Q W+S+LE+ 
Sbjct: 33 RIALTQGMRNLRKRVGMTQKELAQKLGVTQGWVSKLESA 71


>gi|322613196|gb|EFY10140.1| hypothetical protein SEEM315_17865 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619177|gb|EFY16060.1| hypothetical protein SEEM971_20829 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322626043|gb|EFY22855.1| hypothetical protein SEEM973_21760 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322626497|gb|EFY23303.1| hypothetical protein SEEM974_14708 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632390|gb|EFY29138.1| hypothetical protein SEEM201_18692 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322635128|gb|EFY31849.1| hypothetical protein SEEM202_17461 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322642669|gb|EFY39259.1| hypothetical protein SEEM954_08582 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322647958|gb|EFY44430.1| hypothetical protein SEEM054_15121 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650708|gb|EFY47109.1| hypothetical protein SEEM675_00280 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322652891|gb|EFY49228.1| hypothetical protein SEEM965_09839 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657206|gb|EFY53486.1| hypothetical protein SEEM19N_14452 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322662306|gb|EFY58521.1| hypothetical protein SEEM801_06228 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322666841|gb|EFY63017.1| hypothetical protein SEEM507_05993 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672111|gb|EFY68226.1| hypothetical protein SEEM877_04625 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322675833|gb|EFY71905.1| hypothetical protein SEEM867_04673 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322681751|gb|EFY77777.1| hypothetical protein SEEM180_13742 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322684054|gb|EFY80063.1| hypothetical protein SEEM600_14844 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323193326|gb|EFZ78541.1| hypothetical protein SEEM581_19668 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323197683|gb|EFZ82816.1| hypothetical protein SEEM501_14961 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323200743|gb|EFZ85814.1| hypothetical protein SEEM460_14930 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323207252|gb|EFZ92204.1| hypothetical protein SEEM020_16655 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211454|gb|EFZ96295.1| hypothetical protein SEEM6152_00405 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323218500|gb|EGA03208.1| hypothetical protein SEEM0077_08820 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323221017|gb|EGA05449.1| hypothetical protein SEEM0047_14034 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323225993|gb|EGA10212.1| hypothetical protein SEEM0055_20581 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323231673|gb|EGA15785.1| hypothetical protein SEEM0052_06395 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323236078|gb|EGA20156.1| hypothetical protein SEEM3312_17409 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323239500|gb|EGA23549.1| hypothetical protein SEEM5258_18857 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243906|gb|EGA27917.1| hypothetical protein SEEM1156_17632 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323249269|gb|EGA33186.1| hypothetical protein SEEM9199_02187 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323250488|gb|EGA34371.1| hypothetical protein SEEM8282_08477 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323258942|gb|EGA42594.1| hypothetical protein SEEM8283_01562 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260187|gb|EGA43810.1| hypothetical protein SEEM8284_01027 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323265306|gb|EGA48803.1| hypothetical protein SEEM8285_17297 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323270528|gb|EGA53974.1| hypothetical protein SEEM8287_12833 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|161617166|ref|YP_001591131.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167551474|ref|ZP_02345229.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167991568|ref|ZP_02572667.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232973|ref|ZP_02658031.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168237658|ref|ZP_02662716.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|168244212|ref|ZP_02669144.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263065|ref|ZP_02685038.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168467376|ref|ZP_02701213.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168821618|ref|ZP_02833618.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194446538|ref|YP_002043263.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451910|ref|YP_002048044.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194468718|ref|ZP_03074702.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194736659|ref|YP_002116963.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|197251740|ref|YP_002148970.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197263714|ref|ZP_03163788.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|198244893|ref|YP_002217966.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200388606|ref|ZP_03215218.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204930179|ref|ZP_03221156.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|224585852|ref|YP_002639651.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|238912186|ref|ZP_04656023.1| hypothetical protein SentesTe_13791 [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|161366530|gb|ABX70298.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405201|gb|ACF65423.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194410214|gb|ACF70433.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194455082|gb|EDX43921.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194712161|gb|ACF91382.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630241|gb|EDX48881.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197215443|gb|ACH52840.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197241969|gb|EDY24589.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197289380|gb|EDY28745.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|197939409|gb|ACH76742.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199605704|gb|EDZ04249.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204320583|gb|EDZ05785.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205323777|gb|EDZ11616.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205330070|gb|EDZ16834.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332759|gb|EDZ19523.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205336928|gb|EDZ23692.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205341774|gb|EDZ28538.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205348305|gb|EDZ34936.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|224470380|gb|ACN48210.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|312915157|dbj|BAJ39131.1| hypothetical protein STMDT12_C41880 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321225331|gb|EFX50389.1| Putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|326625758|gb|EGE32103.1| Helix-turn-helix type 3 [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|320526923|ref|ZP_08028113.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320132891|gb|EFW25431.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 144

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81
          +  F+ I+KE  +   EI  R+G  +S +SE E GK T + I  +I +A  LD  L +L+
Sbjct: 10 IEGFKRIKKEKGINNYEIHKRSGVLESTLSEFERGKHTDLRISTLIKIADALDVTLDELV 69


>gi|283834661|ref|ZP_06354402.1| hypothetical protein CIT292_08868 [Citrobacter youngae ATCC
          29220]
 gi|291069576|gb|EFE07685.1| toxin-antitoxin system, antitoxin component, Xre family
          [Citrobacter youngae ATCC 29220]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|148655090|ref|YP_001275295.1| helix-turn-helix domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567200|gb|ABQ89345.1| helix-turn-helix domain protein [Roseiflexus sp. RS-1]
          Length = 119

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R+  +LTQ E+ +R G + S+IS +E G+S+  I  +  LA    T  ++LL
Sbjct: 16 RQRDRLTQAELGSRIGVSGSYISSIENGQSSARIAEIEALATVFRTTAFELL 67


>gi|257090409|ref|ZP_05584770.1| predicted protein [Enterococcus faecalis CH188]
 gi|256999221|gb|EEU85741.1| predicted protein [Enterococcus faecalis CH188]
          Length = 75

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           NF+  R++ KLTQKE+  +   ++ +I +LE+G S+ +    +I+A     PL
Sbjct: 3  TNFKMEREKLKLTQKELAEKLDLSEVYIRKLESGASSPSTKKAVIIAEFFGKPL 56


>gi|237728009|ref|ZP_04558490.1| XRE family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226910266|gb|EEH96184.1| XRE family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL+P
Sbjct: 16 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|78221537|ref|YP_383284.1| XRE family transcriptional regulator [Geobacter metallireducens
          GS-15]
 gi|78192792|gb|ABB30559.1| transcriptional regulator, XRE family [Geobacter metallireducens
          GS-15]
          Length = 117

 Score = 38.9 bits (89), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTL 73
          L E   F++ F   R  A +TQ E+  R G  QS I+ LE+  GK + ++  +   AH L
Sbjct: 24 LDEEFAFLDEFLKARAAAGVTQAEVAERIGTTQSAIARLESGGGKHSPSLATLQKYAHAL 83

Query: 74 DTPL 77
             L
Sbjct: 84 GCRL 87


>gi|251800040|ref|YP_003014771.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547666|gb|ACT04685.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IRK   +T  +I   TG +Q ++S++ET K++ +I  +  +A+ L  PL  LL
Sbjct: 7  IRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAYLL 62


>gi|330968428|gb|EGH68688.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 50

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 31/48 (64%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +TQ+E  +R GFA++++S +ETG +  ++D +  LA  L++ L  L  
Sbjct: 1  MTQEEFADRCGFARTYMSRIETGGANPSLDAINTLAVALNSDLESLFA 48


>gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305]
 gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces
          brasiliensis DSM 5305]
          Length = 189

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+E  LT +E+ +++G  +SW+S++E  + T ++  +  +A  L  P+ +L+
Sbjct: 6  LAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVAELV 65

Query: 82 K 82
          +
Sbjct: 66 R 66


>gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 76

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R++  LTQ+++  R+GF+Q ++S LE G     +  +  L+  L     
Sbjct: 4  RKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|241203027|ref|YP_002974123.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856917|gb|ACS54584.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 115

 Score = 38.9 bits (89), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R  RK   ++ KE+  ++G +Q ++SE+ETGK   ++D +  +A  LD  L
Sbjct: 60  VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDL 111


>gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 113

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F    + +RK+A LTQ E+  + G  QS  ++ E GK     +N+I LA  L+  +
Sbjct: 1  MAFAERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSV 58


>gi|153930626|ref|YP_001393241.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP
          31758]
 gi|152958170|gb|ABS45633.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP
          31758]
          Length = 122

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N   I +E  +T+ E+   +G + S++S+L  GK+  ++  M  +A  LDTPL  
Sbjct: 4  LILFTNILRILEERGMTKSELHEVSGVSISFLSDLTNGKANPSLKVMEAIADALDTPLPI 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLE 66


>gi|310639543|ref|YP_003944301.1| transcription regulator [Paenibacillus polymyxa SC2]
 gi|309244493|gb|ADO54060.1| Transcription regulator [Paenibacillus polymyxa SC2]
          Length = 66

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R  RK    TQ+E+ NRTG + + +  +E G  T+  D + I+A TL+  +
Sbjct: 2  ENLQLAQRLRAFRKLKGFTQQELANRTGISLTVLGAVERGNRTVEADMLNIIAQTLEIEV 61

Query: 78 WKL 80
           +L
Sbjct: 62 REL 64


>gi|311281644|ref|YP_003943875.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308750839|gb|ADO50591.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++ +++RERM              L+  EI  R G A+S +S+LE+G    +++ +  L 
Sbjct: 8  IAKSLVRERM-----------RTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLC 56

Query: 71 HTLDTPLWKLLKP 83
            LD P  +LL+P
Sbjct: 57 VALDIPFARLLEP 69


>gi|83950958|ref|ZP_00959691.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM]
 gi|83838857|gb|EAP78153.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM]
          Length = 199

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R  R+   L+Q+E+  R+G  QS IS++E+    + + ++  LAH LD  L 
Sbjct: 12 LREARENKGLSQRELSKRSGVPQSHISKIESNNVDLRLSSLASLAHALDLELA 64


>gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1]
 gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1]
          Length = 181

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+  R     S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|197119160|ref|YP_002139587.1| XRE family helix-turn-helix transcriptional regulator [Geobacter
          bemidjiensis Bem]
 gi|197088520|gb|ACH39791.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter
          bemidjiensis Bem]
          Length = 99

 Score = 38.9 bits (89), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTL 73
          L E   F++ F   R  A +TQ EI  R G  QS ++ LE+  GK + +I  +   AH L
Sbjct: 24 LNEEFHFLDQFLKARAAAGVTQAEIAERIGTTQSAVARLESGRGKHSPSIATLEKYAHAL 83

Query: 74 DTPL 77
             L
Sbjct: 84 GCRL 87


>gi|205354377|ref|YP_002228178.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205274158|emb|CAR39172.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|326629505|gb|EGE35848.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
          Length = 188

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+   L+  EI  R G A+S +S+LE G     ++ +  L   LD P  +LL+P
Sbjct: 22 RQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPTLETLWSLCVALDIPFARLLEP 75


>gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 119

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +ER+I +    +  RKE  ++Q E+  R   +  ++S++E GKS   +  +I ++  L  
Sbjct: 5  KERLIPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64

Query: 76 PLWKLLKP 83
             KLL+P
Sbjct: 65 STDKLLRP 72


>gi|206579655|ref|YP_002241227.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|206568713|gb|ACI10489.1| DNA-binding protein [Klebsiella pneumoniae 342]
          Length = 200

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +LL+P
Sbjct: 34 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 87


>gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 186

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RKE  LT  ++ + TG + + +S++E G +  +   +  LAH LD P+ +  
Sbjct: 6  NKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIPVGRFF 63


>gi|70734303|ref|YP_257943.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68348602|gb|AAY96208.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R IRK  KLT K++  R+G A S +S++E  + +++ + +   A  L   + +L  P
Sbjct: 27 LRTIRKNQKLTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALGVDIARLFTP 84


>gi|56708873|ref|YP_164916.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56680558|gb|AAV97223.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 72

 Score = 38.9 bits (89), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + IR+E  L+Q+E+ +R    Q+++S +ETGK   +I  +  +A  L   + ++ KP
Sbjct: 13 NIQRIRREKDLSQEEVAHRADIHQTYLSGVETGKRNPSILVVERIAKALGVDVSEIFKP 71


>gi|302518777|ref|ZP_07271119.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|318061623|ref|ZP_07980344.1| putative DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318075837|ref|ZP_07983169.1| putative DNA-binding protein [Streptomyces sp. SA3_actF]
 gi|302427672|gb|EFK99487.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 280

 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R +R EA L  K++  R G+ +S +S LETGK T  +D++   A   D
Sbjct: 17 LRELRTEAGLQGKDLAARLGWQRSKVSRLETGKQTPTVDDLATWAQATD 65


>gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 71

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R IR+   L QK +  +TG +Q  +S+ ETGK+   ID    +A  LD  +  L
Sbjct: 7  IREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDL 61


>gi|116250392|ref|YP_766230.1| hypothetical protein RL0620 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255040|emb|CAK06114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 115

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R  RK   ++ KE+  ++G +Q ++SE+ETGK   ++D +  +A  LD  L
Sbjct: 60  VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDL 111


>gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 153

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    +   +R+E  LTQ+++  R    +  +S  ETG++   +D   ++A T D PL +
Sbjct: 1  MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila
          L48]
 gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          entomophila L48]
          Length = 104

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R  RK A LTQ ++  RTGF    IS  ETG  T +I+ ++  A  L
Sbjct: 11 RRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEAL 57


>gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 99

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L
Sbjct: 6  RRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVL 52


>gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N  + +R+E KL+QKE+ +  G  +  IS  E G+STI  D    LA   +  +  LL
Sbjct: 1  MNRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLL 59


>gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 182

 Score = 38.9 bits (89), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+ A L+  E+  R G A+S +S+LE G    +I+ +  L   L+ P  +L++P
Sbjct: 16 RQRAGLSLTEVARRAGVAKSTLSQLEAGNGNPSIETLWSLCVALNIPFARLMEP 69


>gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str.
          JGS1495]
 gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str.
          JGS1495]
          Length = 141

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F N  + +RKE  ++Q+++      ++  IS+LE+GK+  +IDN+I+L       L
Sbjct: 1  MGFNNKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSL 58


>gi|152972701|ref|YP_001337847.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892309|ref|YP_002917043.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae NTUH-K2044]
 gi|330004503|ref|ZP_08304980.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
 gi|150957550|gb|ABR79580.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544625|dbj|BAH60976.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328536576|gb|EGF62908.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
          Length = 200

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +LL+P
Sbjct: 34 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 87


>gi|322834304|ref|YP_004214331.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321169505|gb|ADW75204.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 182

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+ A L+  E+  R G A+S +S+LE G    +++ +  L   L+ P  +L++P
Sbjct: 16 RQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARLMEP 69


>gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 189

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +D+ L    +  +  R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA 
Sbjct: 5  TDSNLTPIGLLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAM 64

Query: 72 TLDTPLWKLLK 82
           LD P+ +L+ 
Sbjct: 65 ALDVPVSRLIS 75


>gi|330835893|ref|YP_004410621.1| XRE family transcriptional regulator [Metallosphaera cuprina
          Ar-4]
 gi|329568032|gb|AEB96137.1| XRE family transcriptional regulator [Metallosphaera cuprina
          Ar-4]
          Length = 184

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          +I   + R +R+ A LTQ E+  R G +QS+I+++E G
Sbjct: 2  LIDTKDLRKMRESAGLTQSELAKRVGVSQSYIAKIEKG 39


>gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC
          25827]
 gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC
          25827]
          Length = 100

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RKE  L+  E+    G +Q  +S  E G+  I +DN++ LA  L+T L
Sbjct: 16 RKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDL 63


>gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
 gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
          Length = 180

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R++  LT +++  R G  +S++S++E G+ST +I   + +A  LD  + +L  
Sbjct: 5  LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61


>gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M]
 gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M]
          Length = 180

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R++  LT +++  R G  +S++S++E G+ST +I   + +A  LD  + +L  
Sbjct: 5  LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61


>gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 415

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N ++ RK+ KLTQ+E+  + G A+S +S  E G    NI  +I L+  ++  L  L
Sbjct: 8  IFSENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLMNCSLDNL 67

Query: 81 L 81
          +
Sbjct: 68 I 68


>gi|219666716|ref|YP_002457151.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219536976|gb|ACL18715.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 110

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 26/36 (72%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          F N  +N+RK+ K+TQ+++  R G   ++IS++ETG
Sbjct: 4  FGNTLKNLRKQHKITQRDLAERVGVDFTYISKIETG 39


>gi|222081923|ref|YP_002541288.1| Helix-turn-helix motif protein [Agrobacterium radiobacter K84]
 gi|221726602|gb|ACM29691.1| Helix-turn-helix motif protein [Agrobacterium radiobacter K84]
          Length = 93

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++R    F    +N RK    TQ E+  R+G  + +I ELE GK +  ++  +I+A  + 
Sbjct: 3  MIRSARDFGTLIKNKRKALGWTQAELATRSGTGERFIVELEAGKPSCQLEKALIVARAVG 62

Query: 75 TPLWKL 80
            L  L
Sbjct: 63 CELADL 68


>gi|22124613|ref|NP_668036.1| hypothetical protein y0699 [Yersinia pestis KIM 10]
 gi|45440452|ref|NP_991991.1| putative transcriptional regulator [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51594841|ref|YP_069032.1| transcriptional regulatory protein [Yersinia pseudotuberculosis
          IP 32953]
 gi|108808978|ref|YP_652894.1| putative transcriptional regulator [Yersinia pestis Antiqua]
 gi|108810767|ref|YP_646534.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|145600549|ref|YP_001164625.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|153950502|ref|YP_001402542.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|153997475|ref|ZP_02022575.1| putative transcriptional regulatory protein [Yersinia pestis
          CA88-4125]
 gi|162420428|ref|YP_001608296.1| DNA-binding protein [Yersinia pestis Angola]
 gi|165925798|ref|ZP_02221630.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165936806|ref|ZP_02225373.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|166010118|ref|ZP_02231016.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166214289|ref|ZP_02240324.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167399645|ref|ZP_02305169.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167420662|ref|ZP_02312415.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167423333|ref|ZP_02315086.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|167467386|ref|ZP_02332090.1| DNA-binding protein [Yersinia pestis FV-1]
 gi|170025937|ref|YP_001722442.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          YPIII]
 gi|186893849|ref|YP_001870961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          PB1/+]
 gi|218930499|ref|YP_002348374.1| putative transcriptional regulator [Yersinia pestis CO92]
 gi|229839137|ref|ZP_04459296.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229896626|ref|ZP_04511793.1| putative transcriptional regulatory protein [Yersinia pestis
          Pestoides A]
 gi|229899701|ref|ZP_04514842.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229900965|ref|ZP_04516089.1| putative transcriptional regulatory protein [Yersinia pestis
          Nepal516]
 gi|270489146|ref|ZP_06206220.1| helix-turn-helix containing protein [Yersinia pestis KIM D27]
 gi|294505187|ref|YP_003569249.1| putative transcriptional regulatory protein [Yersinia pestis
          Z176003]
 gi|21957418|gb|AAM84287.1|AE013672_5 hypothetical [Yersinia pestis KIM 10]
 gi|45435309|gb|AAS60868.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Microtus str. 91001]
 gi|51588123|emb|CAH19729.1| putative transcriptional regulatory protein [Yersinia
          pseudotuberculosis IP 32953]
 gi|108774415|gb|ABG16934.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108780891|gb|ABG14949.1| putative transcriptional regulatory protein [Yersinia pestis
          Antiqua]
 gi|115349110|emb|CAL22073.1| putative transcriptional regulatory protein [Yersinia pestis
          CO92]
 gi|145212245|gb|ABP41652.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149289112|gb|EDM39192.1| putative transcriptional regulatory protein [Yersinia pestis
          CA88-4125]
 gi|152961997|gb|ABS49458.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|162353243|gb|ABX87191.1| DNA-binding protein [Yersinia pestis Angola]
 gi|165915455|gb|EDR34065.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165922410|gb|EDR39587.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165991025|gb|EDR43326.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166204521|gb|EDR49001.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166961468|gb|EDR57489.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167052149|gb|EDR63557.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167057503|gb|EDR67249.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169752471|gb|ACA69989.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis YPIII]
 gi|186696875|gb|ACC87504.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis PB1/+]
 gi|229682304|gb|EEO78396.1| putative transcriptional regulatory protein [Yersinia pestis
          Nepal516]
 gi|229687193|gb|EEO79268.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229695503|gb|EEO85550.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229700404|gb|EEO88436.1| putative transcriptional regulatory protein [Yersinia pestis
          Pestoides A]
 gi|262363249|gb|ACY59970.1| putative transcriptional regulatory protein [Yersinia pestis
          D106004]
 gi|262367180|gb|ACY63737.1| putative transcriptional regulatory protein [Yersinia pestis
          D182038]
 gi|270337650|gb|EFA48427.1| helix-turn-helix containing protein [Yersinia pestis KIM D27]
 gi|294355646|gb|ADE65987.1| putative transcriptional regulatory protein [Yersinia pestis
          Z176003]
 gi|320016691|gb|ADW00263.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Medievalis str. Harbin 35]
          Length = 103

 Score = 38.5 bits (88), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          +E   + AI+  R   +N+   +RK  +LTQ +I  R G ++  IS+ E G+S   +D +
Sbjct: 21 EETARAYAIVMLRKALLNSLVAVRKSKQLTQVDIAKRIGVSRQAISKFEKGESAPTLDTL 80

Query: 67 IILAHTLD 74
          I     +D
Sbjct: 81 IGYTAAMD 88


>gi|325169000|ref|YP_004285747.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325052813|dbj|BAJ83149.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 134

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 35/66 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER +F  N R  R    L+  ++ N     +++I ++E GK  ++ID M  +A      L
Sbjct: 34 ERFVFGANVRAGRNALGLSLTQMANLIDADRAYIGKVEHGKINVSIDRMSSIAELFRVHL 93

Query: 78 WKLLKP 83
          ++LL+P
Sbjct: 94 YELLQP 99


>gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum
          DSM 5476]
 gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum
          DSM 5476]
          Length = 261

 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +RKEA L+Q+ +  + G ++  +S+ E+G+ST +I+N+  L+      L +L+K
Sbjct: 10 LRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDELIK 63


>gi|224542992|ref|ZP_03683531.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524130|gb|EEF93235.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM
          15897]
          Length = 117

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M ++K ++ H S+ +  + M+     R +RK    T +++ NR    +SWISE+E G++ 
Sbjct: 31 MKKKKIEDEHTSELLKYQGMLL----RQLRKNTSYTMEDVANRFCKTKSWISEIENGRNN 86

Query: 61 IN 62
          I+
Sbjct: 87 IS 88


>gi|156741559|ref|YP_001431688.1| XRE family transcriptional regulator [Roseiflexus castenholzii
          DSM 13941]
 gi|156232887|gb|ABU57670.1| transcriptional regulator, XRE family [Roseiflexus castenholzii
          DSM 13941]
          Length = 119

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R+  +LTQ E+  R G + S+IS +E G+S+  I ++  LA    T  + LL
Sbjct: 16 RQRDRLTQAELGGRIGVSGSYISSIENGQSSARIADIEALAVVFRTTAFDLL 67


>gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 179

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R  RK   L+ ++I  RTG +Q ++S++E  K++ +I  +  +A+ L  PL  LL
Sbjct: 6  NIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFLL 62


>gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061]
 gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila]
 gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061]
          Length = 101

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL-WKLL 81
          RKE  +T   +  + G +Q  +S  E G + IN+D+++++A  L+TP+ W  L
Sbjct: 16 RKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPIDWFFL 68


>gi|262041673|ref|ZP_06014865.1| DNA-binding protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288937864|ref|YP_003441923.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|290513088|ref|ZP_06552451.1| DNA-binding protein [Klebsiella sp. 1_1_55]
 gi|259040935|gb|EEW42014.1| DNA-binding protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288892573|gb|ADC60891.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
 gi|289774470|gb|EFD82475.1| DNA-binding protein [Klebsiella sp. 1_1_55]
          Length = 182

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +LL+P
Sbjct: 16 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|84502066|ref|ZP_01000224.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597]
 gi|84390061|gb|EAQ02695.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597]
          Length = 69

 Score = 38.5 bits (88), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 33/52 (63%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK A LTQ+++ +R    QS+++ +E+G+  I++  +I+LA  ++     LL
Sbjct: 5  RKAAGLTQEQLADRLKCHQSFVARVESGERRIDVIELIVLARAMEVDASTLL 56


>gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans
          EJ3]
 gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans
          EJ3]
          Length = 195

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           R IRKE  +TQ+E+  + G  Q++I++LE+GK
Sbjct: 16 IRKIRKELGITQEELARKAGVTQAYIAKLESGK 48


>gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1]
 gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains
          [Thermococcus kodakarensis KOD1]
          Length = 192

 Score = 38.5 bits (88), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 5/42 (11%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-----STIN 62
           R IRKE  +TQ+E+  + G  Q++I++LE GK     ST+N
Sbjct: 13 IRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVDPRLSTLN 54


>gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          X98]
 gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          X98]
 gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
          Length = 183

 Score = 38.5 bits (88), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|225619797|ref|YP_002721054.1| putative transcriptional regulator [Brachyspira hyodysenteriae
          WA1]
 gi|225214616|gb|ACN83350.1| putative transcriptional regulator [Brachyspira hyodysenteriae
          WA1]
          Length = 139

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN R IRK    T  EI   +G +  ++  +E GK  I+I N+  +A+ L+ P+  L 
Sbjct: 41 NNIRAIRKSQTKTISEIAEMSGISAKYLQSVEVGKRNISITNLNKIANALNVPIGILF 98


>gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 104

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L
Sbjct: 11 RRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVL 57


>gi|150377745|ref|YP_001314340.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150032292|gb|ABR64407.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 90

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + R    F +  R  RK    TQ E+  R+G  + +I ELE+GK +  ++  +I+A T+ 
Sbjct: 1  MFRSARDFGDAVREKRKVLGWTQAELATRSGTGERFIVELESGKRSCQLEKALIVARTVG 60

Query: 75 TPLWKL 80
            +  L
Sbjct: 61 IEIGDL 66


>gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC
          33386]
 gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC
          33386]
          Length = 108

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N +N RK  KLTQ+E+ ++ G  +  +++ E+GK ++ +  +  ++  LDTP+    K
Sbjct: 7  SNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSDFFK 65


>gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 158

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I
          [Pyrococcus furiosus DSM 3638]
 gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I
          [Pyrococcus furiosus DSM 3638]
          Length = 187

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          + R IRKE  +TQ+E+  + G  Q++I++LE GK
Sbjct: 12 DIRRIRKELGITQEELARKAGVTQAYIAKLEAGK 45


>gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612]
 gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612]
          Length = 268

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F      +RK+   +Q+ +  R G ++  +S+ E+G S  +I+N++ L+   +  L +
Sbjct: 1  MTFQERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
 gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
          Length = 189

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          M+F +  R +RK++ LTQ E   +TG  +S +   E+GK   N   +  +A
Sbjct: 1  MVFADRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVA 51


>gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 254

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           ER I   N R +R +  LT  E+  R+G + + IS++E    + ++  +  LA TLD P+
Sbjct: 65  ERAI-AGNVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVPV 123

Query: 78  WKLLK 82
             L +
Sbjct: 124 TSLFR 128


>gi|269793184|ref|YP_003318088.1| transcriptional regulator, XRE family [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269100819|gb|ACZ19806.1| transcriptional regulator, XRE family [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 124

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +AK+ Q E+  R G +Q+++S +ETGK   + + +   A  L   L +
Sbjct: 1  MRHGERIRRARLKAKMEQGELARRIGISQAFLSRIETGKRGCSSEILERAARALGVGLEE 60

Query: 80 LLKP 83
          L  P
Sbjct: 61 LCSP 64


>gi|94496789|ref|ZP_01303364.1| transcriptional regulator, XRE family protein [Sphingomonas sp.
          SKA58]
 gi|94423802|gb|EAT08828.1| transcriptional regulator, XRE family protein [Sphingomonas sp.
          SKA58]
          Length = 73

 Score = 38.5 bits (88), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 37/62 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R++ ++TQ+E+ +RTG +  ++  +E  + +++I  +  LA  +D    +L
Sbjct: 6  VLARNLRLLRQKKEITQEELADRTGLSSRYVGSIERARVSVSITVLGKLALAMDVDPCEL 65

Query: 81 LK 82
          ++
Sbjct: 66 IR 67


>gi|332291138|ref|YP_004429747.1| transcriptional regulator, XRE family [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332169224|gb|AEE18479.1| transcriptional regulator, XRE family [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 490

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    R IR E  L+   +   TG ++S+++E+E GK     D ++ L+  LD P  
Sbjct: 7  KLIFGLKLRQIRTEKNLSLFGLSKLTGLSKSYLNEIENGKKYPKPDKIVTLSEKLDIPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1]
          Length = 119

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +ER++ +    +  RKE  ++Q E+  R   +  ++S++E GKS   +  +I ++  L  
Sbjct: 5  KERLVPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64

Query: 76 PLWKLLKP 83
             KLL+P
Sbjct: 65 STDKLLRP 72


>gi|257869745|ref|ZP_05649398.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|309778441|ref|ZP_07673356.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|257803909|gb|EEV32731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|308913804|gb|EFP59629.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 69

 Score = 38.5 bits (88), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E +I  N  + +RKE KL+Q E+    G +++ IS +ETG+        ++L   LD 
Sbjct: 1  MNEHLILKNRLKEVRKEKKLSQTELAEMVGVSRNTISSIETGQFNPTAKLALVLCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|258406482|ref|YP_003199224.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798709|gb|ACV69646.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 117

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R  R  + LTQ E+  +TG AQS +S +E GK  I  D    LA  LD
Sbjct: 62  LRAARNRSGLTQIELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLD 110


>gi|163797612|ref|ZP_02191561.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199]
 gi|159177087|gb|EDP61649.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199]
          Length = 125

 Score = 38.1 bits (87), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 3   RRKRDEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           R   DE  +  A + +R++   +  R  R+   L+  E+  R G +Q+++S+LETGK   
Sbjct: 45  RLASDEEEMLPAAMVDRLLAGESALRVWREHRGLSASELAERAGLSQAYVSQLETGKRDG 104

Query: 62  NIDNMIILAHTL 73
           ++  M  LA  L
Sbjct: 105 SVAAMGSLAQAL 116


>gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC
          29799]
 gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC
          29799]
          Length = 259

 Score = 38.1 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +R+E  ++Q+E+ N  G ++  + + E+G S  NIDN++ ++      L  L
Sbjct: 1  MFEERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYL 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
 gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1]
          Length = 222

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R +R++  LT  E   R G +++ +S++E  +++ ++  + +LA   D P+  L +
Sbjct: 42 NVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTSLFR 99


>gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 104

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L
Sbjct: 11 RRYRKLAGLTQAQLAERTGFDPKTISRFETNTYTPSIDAIMAFAQVL 57


>gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA]
 gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 38.1 bits (87), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++     R +R+E+ LTQ+++   TG  +S+++++E G     ID M  +A  L   L 
Sbjct: 6  RILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65

Query: 79 KLLKP 83
          +L + 
Sbjct: 66 QLFEG 70


>gi|330823701|ref|YP_004387004.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329309073|gb|AEB83488.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 77

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 37/60 (61%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R+ R   +L+Q+E+ +R G  +++I++LE  ++   +  ++ +A  L+ PL +L+
Sbjct: 11 FADELRSRRAALRLSQEELAHRAGINRTYIAKLELARNQPTLTVLLRVAEALEVPLPELI 70


>gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC
          9812]
 gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC
          9812]
          Length = 114

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          MIF    + +R E KL+Q  +  +   ++  IS+ ETG+ST +++N+I +A  L   L
Sbjct: 5  MIFSTQLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSL 62


>gi|255320501|ref|ZP_05361682.1| transcriptional regulator, XRE family [Acinetobacter
          radioresistens SK82]
 gi|262378393|ref|ZP_06071550.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255302473|gb|EET81709.1| transcriptional regulator, XRE family [Acinetobacter
          radioresistens SK82]
 gi|262299678|gb|EEY87590.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 182

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +  R++A L+  E+  R G A+S +S+LE  +   +++ +  L   LD P  KL
Sbjct: 7  IVAKGLQRERQKAGLSLTEVARRAGIAKSTLSQLEAAQGNPSLETLWALCVALDIPFAKL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
          Length = 186

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R  R    L+  E+  R G A+S +S+LE+G    +++ +  LA  L  P  +L
Sbjct: 11 IISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSRL 70

Query: 81 LKP 83
          + P
Sbjct: 71 VDP 73


>gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20]
          Length = 80

 Score = 38.1 bits (87), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R++  L+Q+++  RT    S+I ++E G+  +++ N++ +AH LDT    L+
Sbjct: 16 FGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHALDTDAGGLV 75


>gi|302129811|ref|ZP_07255801.1| putative phage repressor [Pseudomonas syringae pv. tomato NCPPB
          1108]
          Length = 259

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          RKEA LTQ E+  + G AQ+ IS+LE+GK+
Sbjct: 11 RKEAHLTQSELAEKVGIAQTAISQLESGKT 40


>gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
          Length = 251

 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          I  N+ + IRK  K+TQKE+   TGF Q+ IS  E G   ++
Sbjct: 3  ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLD 44


>gi|221632745|ref|YP_002521967.1| Helix-turn-helix domain-containing protein [Thermomicrobium
          roseum DSM 5159]
 gi|221156190|gb|ACM05317.1| Helix-turn-helix domain protein [Thermomicrobium roseum DSM 5159]
          Length = 154

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           F    R  R+ A+L+Q  +  R GF  S++S LE+G+     + ++ LA  L+
Sbjct: 3  FFGQLLRRYRESARLSQSRLAQRAGFDHSYVSRLESGRRAPTREAILRLAEALE 56


>gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC
          29098]
 gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC
          29098]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          RK   +TQ+E+ +R G ++  +++ ETG+S+ +ID + +L   L T L +L+ P
Sbjct: 20 RKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLDELIVP 73


>gi|111021488|ref|YP_704460.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110821018|gb|ABG96302.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 187

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+ R +A LT +++  +TG +Q ++S+ E G S  ++ N+  +A  L T    LL+
Sbjct: 17 RSARHDAGLTLRDVAAKTGLSQPFLSQAENGHSVPSVMNLHRVAQVLGTTAHALLE 72


>gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
          27755]
 gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
          27755]
          Length = 295

 Score = 38.1 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +RK+A ++Q+++  + G ++  +++ ETG    +I+N++ ++   D  +  
Sbjct: 3  MTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDD 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|323528479|ref|YP_004230631.1| Cupin 2 barrel domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323385481|gb|ADX57571.1| Cupin 2 conserved barrel domain protein [Burkholderia sp.
          CCGE1001]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + R  RK   LT  E+  R+G A S IS+ E G   +  D    LAH+L+
Sbjct: 27 GHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77


>gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 104

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L
Sbjct: 11 RRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDALMEFAQVL 57


>gi|91787363|ref|YP_548315.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696588|gb|ABE43417.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR  R      +A   +R+      R  RK  +LT K++  R+G A S +S++E G+ +
Sbjct: 1  MPRSARTPAAAPEA---DRVQLGLRLREHRKARRLTLKDLSGRSGVALSTLSKMELGQMS 57

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          ++ + +  +A  L   + +LL
Sbjct: 58 VSYEKLAAVARALSLDVGQLL 78


>gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|170692929|ref|ZP_02884090.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
 gi|170141927|gb|EDT10094.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
          Length = 217

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + R  RK   LT  E+  R+G A S IS+ E G   +  D    LAH+L+
Sbjct: 29 GHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 79


>gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
 gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
 gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342]
 gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62]
 gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          OG1RF]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|118497388|ref|YP_898438.1| transcriptional regulator [Francisella tularensis subsp. novicida
          U112]
 gi|195536079|ref|ZP_03079086.1| helix-turn-helix protein, putative [Francisella tularensis subsp.
          novicida FTE]
 gi|208779183|ref|ZP_03246529.1| helix-turn-helix DNA binding protein [Francisella novicida FTG]
 gi|118423294|gb|ABK89684.1| transcriptional regulator [Francisella novicida U112]
 gi|194372556|gb|EDX27267.1| helix-turn-helix protein, putative [Francisella tularensis subsp.
          novicida FTE]
 gi|208744983|gb|EDZ91281.1| helix-turn-helix DNA binding protein [Francisella novicida FTG]
          Length = 70

 Score = 38.1 bits (87), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R  RK+  LTQ ++   +G    +I E+E GKST +I  +I LA +L 
Sbjct: 16 RKARKKQGLTQADLAGISGLGTRFIGEVENGKSTAHIGKVIQLASSLG 63


>gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM
          10411]
 gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM
          10411]
          Length = 180

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ RK+  LT K +  + G   ++IS++ETGK+  +I  +  +A +LD  +  
Sbjct: 1  MNMAEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRD 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
 gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
 gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
 gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|307727246|ref|YP_003910459.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1003]
 gi|307587771|gb|ADN61168.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 215

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 26/51 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + R  RK   LT  E+  R+G A S IS+ E G   +  D    LAH+L+
Sbjct: 27 GHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDKFAALAHSLE 77


>gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|221213709|ref|ZP_03586683.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221166498|gb|EED98970.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
          Length = 81

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F      +RK    +Q+++   +G A+S++  +E G+  I + N+ +LA TL+ P
Sbjct: 8  LFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVP 63


>gi|146305038|ref|YP_001192354.1| XRE family transcriptional regulator [Metallosphaera sedula DSM
          5348]
 gi|145703288|gb|ABP96430.1| transcriptional regulator, XRE family [Metallosphaera sedula DSM
          5348]
          Length = 184

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 21 IFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          +F+N  + R +R+ A LTQ E+  R G +QS I+++E GK
Sbjct: 1  MFINLSDIRKMREMAGLTQTELARRVGVSQSLIAKIEKGK 40


>gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 178

 Score = 38.1 bits (87), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 39/63 (61%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M +    R+IRK   +T +++  +TGF +S+IS++E GK++ +I ++  + + +   + +
Sbjct: 1  MGYGEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISE 60

Query: 80 LLK 82
          L +
Sbjct: 61 LFE 63


>gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|88801079|ref|ZP_01116626.1| transcriptional regulator, putative [Reinekea sp. MED297]
 gi|88776158|gb|EAR07386.1| transcriptional regulator, putative [Reinekea sp. MED297]
          Length = 496

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R I     +  R+ A L+ K++  RT  + S++SE+E GK     + +++LAH L+
Sbjct: 9  RFILGIKIKQFRQNAGLSLKQLSERTQLSVSYLSEIEKGKKYPKPEKIVLLAHALN 64


>gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 112

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          +F    +++RKEAKLTQK+I ++ GF+Q    + E+GK
Sbjct: 1  MFSERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGK 38


>gi|295095052|emb|CBK84142.1| Predicted transcriptional regulators [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 182

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  EI  R G A+S +S+LE+G    +++ +  L   LD P  +LL+P
Sbjct: 16 RLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|296105405|ref|YP_003615551.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295059864|gb|ADF64602.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 182

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  EI  R G A+S +S+LE+G    +++ +  L   LD P  +LL+P
Sbjct: 16 RLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|296122391|ref|YP_003630169.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
 gi|296014731|gb|ADG67970.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
          Length = 82

 Score = 38.1 bits (87), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  NFR  RK   LTQK++  + G   + +S +E+ +S+ + + + + A   +    
Sbjct: 7  RTVFARNFRLQRKARGLTQKQLAEKIGVTAAQVSHIESQRSSPSFEVIFMSARVFNLSPA 66

Query: 79 KLLKP 83
           LL P
Sbjct: 67 ALLIP 71


>gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1]
 gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1]
          Length = 140

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N ++ RK   LTQ+++  R G ++  +++ ETG ST ++ N   LA  LD  L  L+
Sbjct: 4  SNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 61


>gi|259416828|ref|ZP_05740748.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
 gi|259348267|gb|EEW60044.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
          Length = 216

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 5  KRDEPHLSD---AILRE------RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55
          K+D P  SD   A+L +      R+      + +R  A +T ++   RTG A S I ++E
Sbjct: 6  KKDSPFSSDVQAALLDDSEKQQIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIE 65

Query: 56 TGKSTINIDNMIILAHTLDTPLWKLL 81
           GK + + +N++ LA      L KL+
Sbjct: 66 NGKVSPSFENLLRLARGYGVGLEKLI 91


>gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R++RK+  +T   +   TG +Q+ +S++E G +  +   +  LAH LD P+ +  
Sbjct: 22 NKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIPVGRFF 79


>gi|167749249|ref|ZP_02421376.1| hypothetical protein EUBSIR_00200 [Eubacterium siraeum DSM 15702]
 gi|167657778|gb|EDS01908.1| hypothetical protein EUBSIR_00200 [Eubacterium siraeum DSM 15702]
          Length = 68

 Score = 38.1 bits (87), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          RKEA LTQ+E   R+G    ++ ELE GK T+ +D
Sbjct: 12 RKEAGLTQEEFAMRSGLGLRFVRELEQGKETVRMD 46


>gi|299133247|ref|ZP_07026442.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593384|gb|EFI53584.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 76

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N   +R E  ++Q+E+ +     +S++S+LETGK+ + ++ M  +A  L     
Sbjct: 4  RRTFAANVVKLRAERGISQEELAHLAEINRSYLSDLETGKTYVGLEIMGKIADVLGVEGA 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322]
 gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322]
          Length = 183

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 201

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R  R    L+  E+  R G A+S +S+LE+G    +++ +  LA  L  P  +L
Sbjct: 26 IISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSRL 85

Query: 81 LKP 83
          + P
Sbjct: 86 VDP 88


>gi|224371939|ref|YP_002606105.1| putative transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
 gi|223694658|gb|ACN17941.1| putative transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
          Length = 84

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          ++IRK+  +TQ ++ + TG +  +IS++E GK T  +D +  L   L   ++  + P
Sbjct: 21 KDIRKKKNMTQGDLADITGTSVKFISDVERGKETTQMDKVFDLVRALGIQIYLTIDP 77


>gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC
          15579]
 gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC
          15579]
          Length = 189

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R   KLT KE+  RT  +  ++S+LE G +T+ ID++  +A  LD  L
Sbjct: 10 KKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNL 60


>gi|34540627|ref|NP_905106.1| transcriptional regulator [Porphyromonas gingivalis W83]
 gi|34396941|gb|AAQ66005.1| transcriptional regulator, putative [Porphyromonas gingivalis
          W83]
          Length = 74

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          ++ R I     + +RK+ KLTQ ++  + G    ++ ELE GK+T+ +D +
Sbjct: 1  MQARTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVRELEQGKTTLRLDKV 51


>gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp.
          Re1]
          Length = 190

 Score = 38.1 bits (87), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N  R +R    LT KE+  +T  + S++S++E G S ++I  +  +AH L+T L
Sbjct: 11 NKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETEL 64


>gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis
          ATCC 700641]
 gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis
          ATCC 700641]
          Length = 295

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 38/62 (61%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N ++IRK+  ++Q+ +  + G ++  +++ ETG    +I+NMI +++  +  + +
Sbjct: 1  MTFAENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|288801315|ref|ZP_06406769.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
 gi|288331698|gb|EFC70182.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
          Length = 74

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          R I     + +RK+ KLTQ ++  + G    ++ ELE GK+T+ +D +
Sbjct: 4  RTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVQELEQGKTTLRLDKV 51


>gi|222055496|ref|YP_002537858.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221564785|gb|ACM20757.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 117

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTL 73
          L E   F++ F   R  A +TQ E+  R G  QS I+ LE+  GK + +I  +   AH L
Sbjct: 24 LDEEFRFLDEFLKARAAAGVTQAEVAERIGTTQSAIARLESGGGKHSPSIATLQKYAHAL 83

Query: 74 DTPL 77
             L
Sbjct: 84 GCRL 87


>gi|217970536|ref|YP_002355770.1| XRE family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507863|gb|ACK54874.1| transcriptional regulator, XRE family [Thauera sp. MZ1T]
          Length = 85

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 38/64 (59%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F  +   +R+    +Q+ +   +G A+S++  +E G+  I + N+I LA+ L+ P  
Sbjct: 8  RVLFGKHLAELRRSRGWSQEYLALESGLARSYLGGVERGQRNIALLNIIRLANALELPPS 67

Query: 79 KLLK 82
          KLL+
Sbjct: 68 KLLE 71


>gi|217980119|ref|YP_002364169.1| helix-turn-helix domain protein [Thauera sp. MZ1T]
 gi|217508290|gb|ACK55075.1| helix-turn-helix domain protein [Thauera sp. MZ1T]
          Length = 82

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N    R+E   +Q+++   +G  +S+I+ +E     I++DN+  LA TL  P  
Sbjct: 15 RAVLSANLVRFRRERGWSQEKLAFESGLDRSFIAHVERQARNISLDNIERLARTLGVPFH 74

Query: 79 KLLKP 83
           LL P
Sbjct: 75 VLLTP 79


>gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA]
 gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA]
          Length = 143

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N ++ RK   LTQ+++  R G ++  +++ ETG ST ++ N   LA  LD  L  L+
Sbjct: 7  SNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDALV 64


>gi|170754823|ref|YP_001782088.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169120035|gb|ACA43871.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 81

 Score = 38.1 bits (87), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IR+E  ++Q ++    G ++S++SE+E+GK T ++D +  +A  L+     LL
Sbjct: 4  NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEVCTALLL 60


>gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787]
 gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787]
          Length = 122

 Score = 38.1 bits (87), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  R+   LTQ+E   +TGF  ++IS LE G S    +N+I+L + L+  
Sbjct: 21 IKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVS 71


>gi|224826557|ref|ZP_03699658.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224601158|gb|EEG07340.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 81

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 23 VNNFRNIRKEAKL----TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          V+ F  + +EA+L    +Q+E+  R    ++++S +E G+S I +D++  LA  L+T   
Sbjct: 4  VSAFGRVVREARLAKGWSQEELAERASLHRNFVSLVERGQSKIALDSLFFLADALETTAS 63

Query: 79 KLLKP 83
          +LL+ 
Sbjct: 64 ELLRA 68


>gi|167753959|ref|ZP_02426086.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216]
 gi|167658584|gb|EDS02714.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216]
          Length = 106

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +E + F++N  R +RKE ++T +E+  R    +S +S +E+G++ + +  M I+ + L+ 
Sbjct: 40  QEEIKFISNKIRELRKEKQMTVQELAYRCDMERSNMSRIESGRTNLTVKTMCIICNALNV 99

Query: 76  PLWKLLK 82
            L  +++
Sbjct: 100 NLRDIIR 106


>gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator
          [Magnetospirillum magneticum AMB-1]
 gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1]
          Length = 290

 Score = 37.7 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A+L  R+   +  +  R    +++K++ +  G ++ ++++LE G++ ++++ + +LA  +
Sbjct: 8  AVLARRL--GDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAM 65

Query: 74 DTPLWKLLK 82
          DTP+ +L++
Sbjct: 66 DTPITELIE 74


>gi|317475652|ref|ZP_07934913.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|316908222|gb|EFV29915.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
          Length = 104

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 10/59 (16%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          ILRER          RKE KLTQK++  + G  QS+I+ +E G++ I + +   +A  L
Sbjct: 46 ILRER----------RKELKLTQKQLAQKIGKEQSYIARVEKGEADIQLSSFFRIARAL 94


>gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter
          oceani DSM 16646]
 gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter
          oceani DSM 16646]
          Length = 181

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RK+  LT KE+   TG + S++S++E G S++ I ++  +A  L+ P+ +  
Sbjct: 12 LRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEFF 64


>gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 189

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD P+ +L+ 
Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVSRLIS 75


>gi|302540026|ref|ZP_07292368.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302457644|gb|EFL20737.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 207

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  + D P   D    ER+I V   R  R+ A L+  E+  R G +++ +S++E  ++  
Sbjct: 7  PAEESDNP---DDKALERVIAVRA-REYRQAAGLSVGEMAQRVGISKAMLSKIENAQTAC 62

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          ++  +  LA  LD P+  L +
Sbjct: 63 SLTTLSRLARGLDVPVTALFR 83


>gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104]
          Length = 183

 Score = 37.7 bits (86), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|126724437|ref|ZP_01740280.1| Transcriptional Regulator, XRE family protein [Rhodobacterales
          bacterium HTCC2150]
 gi|126705601|gb|EBA04691.1| Transcriptional Regulator, XRE family protein [Rhodobacterales
          bacterium HTCC2150]
          Length = 199

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 32/53 (60%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + ++ R+   L+Q+E+  R+G  QS IS++E+    + + ++  LAH LD  L
Sbjct: 11 SLKSARENKGLSQRELSARSGVPQSHISKIESNAVDLRLSSLASLAHALDLEL 63


>gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1]
 gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          + R  R+ + ++  E+  R G A+S +S+LE+G    +++ +  L   LD  + +LL P
Sbjct: 13 SLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQLLDP 71


>gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Escherichia coli M605]
 gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Escherichia coli M605]
          Length = 108

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
          +N R +R+ AKL+Q+E+ +++G +++ IS LE G +    I  +I +A  L T + +L+
Sbjct: 6  DNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEELI 64


>gi|124010434|ref|ZP_01695075.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123983471|gb|EAY23951.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 504

 Score = 37.7 bits (86), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R+IF    + +R E KL+  E+   TG + S+++E+E GK     + +  LA TL+ 
Sbjct: 9  RLIFGVKVKQLRTEKKLSLAEVSKATGISISYLNEIEKGKKYPKPNKIATLAQTLEV 65


>gi|258516790|ref|YP_003193012.1| helix-turn-helix domain-containing protein [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780495|gb|ACV64389.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM
          771]
          Length = 66

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R IR+   +TQ E+ N TG+ QS IS++E+G   +    +   A  L   + +LL+ 
Sbjct: 4  NKIRIIRESKHMTQDELGNLTGYKQSQISKIESGSREVKSRELGKFAAALGVKITELLEE 63


>gi|296125780|ref|YP_003633032.1| XRE family transcriptional regulator [Brachyspira murdochii DSM
          12563]
 gi|296017596|gb|ADG70833.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM
          12563]
          Length = 139

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R IRK    T  EI   +G +  ++  +E GK  I+I N+  +A TL+ P+  L 
Sbjct: 42 NIRAIRKSQMKTISEIAEVSGISSKYLQSVEVGKRNISITNLNKIAKTLNVPIAVLF 98


>gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320]
          Length = 186

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+A L+  EI  R G A+S +S+LE G+   +I+ +  +   L+ P  +L+
Sbjct: 19 RKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLI 70


>gi|238025656|ref|YP_002909888.1| Transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880321|gb|ACR32652.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 101

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPL 77
          M+F    + +R+   +TQK++  R G + S++SE+ETG  K +I ID +   A     P+
Sbjct: 1  MLF-QALKLLRRYHGMTQKDLAARLGISNSYLSEIETGVKKDSITIDLLEKYAAVFGIPV 59

Query: 78 WKLL 81
            LL
Sbjct: 60 SSLL 63


>gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11]
 gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 187

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+A L+  EI  R G A+S +S+LE G+   +I+ +  +   L+ P  +L+
Sbjct: 20 RKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQLI 71


>gi|218290296|ref|ZP_03494442.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239651|gb|EED06843.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 223

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           I  NN R +R+    +  E+  R+G A+  IS+LE+G     +  +  LA  L  P   L
Sbjct: 40  IVSNNLRTLRQARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSDL 99

Query: 81  LK 82
           ++
Sbjct: 100 IQ 101


>gi|27376700|ref|NP_768229.1| hypothetical protein bsl1589 [Bradyrhizobium japonicum USDA 110]
 gi|27349841|dbj|BAC46854.1| bsl1589 [Bradyrhizobium japonicum USDA 110]
          Length = 78

 Score = 37.7 bits (86), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          +RK A L Q ++ N+ G  QSW++ LE+G+  I++  +I L   +
Sbjct: 20 LRKGAGLRQVDLANKLGVYQSWVTHLESGQRRIDVVELIELGRAI 64


>gi|213963046|ref|ZP_03391305.1| transcriptional regulator, y4mF family [Capnocytophaga sputigena
          Capno]
 gi|213954387|gb|EEB65710.1| transcriptional regulator, y4mF family [Capnocytophaga sputigena
          Capno]
          Length = 66

 Score = 37.7 bits (86), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK+ KLTQ E+  R G    ++ ELE GKST+ +D +
Sbjct: 11 RKQLKLTQTELAMRAGVGLRFVRELEQGKSTLRLDKV 47


>gi|305682108|ref|ZP_07404912.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266]
 gi|305658581|gb|EFM48084.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266]
          Length = 274

 Score = 37.7 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 31/44 (70%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R+EA LTQ ++  R G  QS+IS+LE+G+ ++ ++ +  +A +L
Sbjct: 18 REEAALTQSQLAQRLGKPQSFISKLESGERSLRVEELPQIAQSL 61


>gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans
          SSM1]
 gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter
          desulfuricans SSM1]
          Length = 178

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M +    R IRK   +T +++  +TGF +S+IS++E GK++ +I ++  +   L   + +
Sbjct: 1  MSYGAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISE 60

Query: 80 LLK 82
          L +
Sbjct: 61 LFE 63


>gi|16519701|ref|NP_443821.1| transcription regulator; symbiotic plasmid stability locus
          [Sinorhizobium fredii NGR234]
 gi|2496605|sp|P55411|Y4DL_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
          y4dL
 gi|7465606|pir||T02775 y4dL protein - Rhizobium sp. plasmid pNGR234a
 gi|2182355|gb|AAB91641.1| transcription regulator; symbiotic plasmid stability locus
          [Sinorhizobium fredii NGR234]
          Length = 196

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               R  R+  K++Q+E+  R+G  QS IS++E G     + +++ +A  LD
Sbjct: 8  ITQQLRAAREAQKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALD 60


>gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
          2379]
 gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM
          2379]
          Length = 107

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +RK A +TQ+++    G  Q  +S +E GKS  ++D ++ +A  ++ PL  L +
Sbjct: 12 IRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAPLPNLFE 68


>gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
 gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
          Length = 184

 Score = 37.7 bits (86), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|167851665|ref|ZP_02477173.1| Transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei B7210]
          Length = 72

 Score = 37.7 bits (86), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 30/51 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + +RK+A LTQ ++  + G  QS++S++E G+  +++   +      +TP
Sbjct: 14 LKQVRKDAGLTQVQLAEKLGRGQSYVSKVERGEQYLDVLEFVEWCEACNTP 64


>gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC
          29909]
 gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC
          29909]
          Length = 193

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          + R  R++  LT  E+  R G A+S +S+LE G    +++ +  LA  LD P+ +L+ 
Sbjct: 22 SIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLIA 79


>gi|153932832|ref|YP_001384724.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936860|ref|YP_001388245.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152928876|gb|ABS34376.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932774|gb|ABS38273.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 81

 Score = 37.7 bits (86), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IR+E  ++Q ++    G ++S++SE+E+GK T ++D +  +A  L+     LL
Sbjct: 4  NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEVCTSLLL 60


>gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
 gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
          Length = 150

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N + IR+E KLTQ E+ N  G +Q   S  ET K+   ++N++ LA+  +T
Sbjct: 7  NLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNT 57


>gi|295094888|emb|CBK83979.1| Helix-turn-helix. [Coprococcus sp. ART55/1]
          Length = 66

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RKEA LTQ+E   R+G    ++ ELE GK T+ +D +
Sbjct: 12 RKEAGLTQEEFAIRSGLGLRFVRELEQGKETVRMDKV 48


>gi|149927186|ref|ZP_01915443.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp.
          MED105]
 gi|149824125|gb|EDM83346.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp.
          MED105]
          Length = 257

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R++R   K++Q ++  R G +Q  +S +ETGK++ + + ++ L   LD PL
Sbjct: 14 LRDLRARQKISQLDLALRVGVSQRHLSCIETGKASASKEMLLALLEGLDAPL 65


>gi|317501888|ref|ZP_07960073.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896778|gb|EFV18864.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 69

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N  + +RKE KL+Q E+    G +++ IS +ETG+        ++L   LD   
Sbjct: 3  EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|94972429|ref|YP_595647.1| hypothetical protein LIC031 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731966|emb|CAJ53983.1| NA [Lawsonia intracellularis PHE/MN1-00]
          Length = 93

 Score = 37.7 bits (86), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +N R+E  L++  +   +G   SW+  LE GKS I  + +I++A  L  P
Sbjct: 14 IKNFREEQGLSRYIVAKESGLDSSWLRRLEDGKSGIRTETLILIARGLKLP 64


>gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
 gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
          Length = 190

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           R IRKE  +TQ+E+  + G  Q++I++LE GK
Sbjct: 13 IRRIRKELGITQEELAEKAGVTQAYIAKLEAGK 45


>gi|119385893|ref|YP_916948.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119376488|gb|ABL71252.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 85

 Score = 37.7 bits (86), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF +N R  R+   L+Q+E+ +R    +++IS LE      +ID +  LA  L+    
Sbjct: 4  REIFAHNLRAARQARGLSQEELAHRADIDRTYISSLERRVYGASIDVVDRLASVLEMEAS 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 105

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           V   R  RK   LTQ  +  + G  QS IS++E GK  + + + + +A  LD
Sbjct: 5  IVRKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLD 57


>gi|225374410|ref|ZP_03751631.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans
          DSM 16841]
 gi|225213648|gb|EEG96002.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans
          DSM 16841]
          Length = 86

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          ++ HL+   L  R   V   ++ RK   +TQ+ +  R G  +S IS  E+GK   ++D +
Sbjct: 11 EKKHLAGQQLTPRYEVVQQLKDARKAQDMTQEVLAERVGTKKSNISRFESGKYNPSLDFL 70

Query: 67 IILAHTL 73
          I +A +L
Sbjct: 71 IKVAGSL 77


>gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104]
 gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor
          domain [Mycobacterium avium 104]
          Length = 178

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R++  LT + +  +TG  +S++S++E G+ST +I   + +A  LD  + +L  
Sbjct: 5  LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61


>gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor
          [Arthrobacter sp. FB24]
          Length = 199

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RK   +T   + + TG +Q+ +S++E G +  +   +  LAH LD P+ +  
Sbjct: 20 NKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAHGLDVPVGRFF 77


>gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis
          SP1PR4]
 gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis
          SP1PR4]
          Length = 71

 Score = 37.7 bits (86), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN RN+R EA LTQ+E+ +  G  +  ++ +E  K +  ++    +A  L  PL  + 
Sbjct: 7  NNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64


>gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii
          NGR234]
 gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium
          fredii NGR234]
          Length = 196

 Score = 37.7 bits (86), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               R  R+  K++Q+E+  R+G  QS IS++E G     + +++ +A  LD
Sbjct: 8  ITQQLRAAREARKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALD 60


>gi|167648136|ref|YP_001685799.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350566|gb|ABZ73301.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 106

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R    LT  +   R G ++S++SELE+G  T +I+ +   A   D P+  L+
Sbjct: 4  NALRLVRVYHNLTPADASARLGISRSYLSELESGNKTASIEVLQKYAKAFDMPVSSLM 61


>gi|220920643|ref|YP_002495944.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219945249|gb|ACL55641.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 138

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            R IRK   LTQ+++++ TG  QS+ISE+E+     + +    LA  L
Sbjct: 80  LRAIRKHKGLTQQQLQDATGLPQSYISEIESSTKRASAEAKAKLAQAL 127


>gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA]
 gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA]
          Length = 250

 Score = 37.7 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---L 77
          I  ++ + +RK  KLTQK++   TGF Q+ IS  E G   ++  ++ I A  L+     L
Sbjct: 3  ILGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYL 62

Query: 78 WKLLKP 83
          + L KP
Sbjct: 63 FDLAKP 68


>gi|184159797|ref|YP_001848136.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211391|gb|ACC58789.1| predicted transcriptional regulator [Acinetobacter baumannii
          ACICU]
 gi|322509710|gb|ADX05164.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 182

 Score = 37.7 bits (86), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 151

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/81 (23%), Positives = 39/81 (48%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR+  +  +L D  L+   I     +++R    L+QK +  ++G +  +I  +E G   
Sbjct: 1  MPRKPVNINNLDDETLKSLAIIGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQN 60

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            I  +  ++  L+ P + +L
Sbjct: 61 ATIGILKRISDALEVPFYSIL 81


>gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 178

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R++  LT + +  +TG  +S++S++E G+ST +I   + +A  LD  + +L  
Sbjct: 5  LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFS 61


>gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium
          efficiens YS-314]
 gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium
          efficiens YS-314]
 gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 81

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 35/58 (60%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R  RK+AKL+Q+E+ + +G  +++IS +E G   I++ N++ +   L   +  ++
Sbjct: 13 DRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSITGVLGVDVGDIV 70


>gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 232

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P  + D+  L D ++R R+      R +R     + +E+  R   +QS +S +ETG+  
Sbjct: 2  LPMTQEDDGDL-DGLVRRRI------RALRVAQGWSLEELAARARLSQSTLSRIETGRRR 54

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
          + +D ++ LA  LDT L +L++
Sbjct: 55 LALDQLVTLARALDTSLDQLVE 76


>gi|262280440|ref|ZP_06058224.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258218|gb|EEY76952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 182

 Score = 37.7 bits (86), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC
          33638]
 gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC
          33638]
 gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC
          33638]
 gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC
          33638]
          Length = 193

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          + R  R++  LT  E+  R G A+S +S+LE G    +++ +  LA  LD P+ +L+ 
Sbjct: 22 SIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRLIA 79


>gi|323519724|gb|ADX94105.1| hypothetical protein ABTW07_3688 [Acinetobacter baumannii
          TCDC-AB0715]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|299768445|ref|YP_003730471.1| Helix-turn-helix family protein [Acinetobacter sp. DR1]
 gi|298698533|gb|ADI89098.1| Helix-turn-helix family protein [Acinetobacter sp. DR1]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus]
 gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus]
          Length = 82

 Score = 37.4 bits (85), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I +NN ++ RKE   +Q+E+ N+    +  IS +E GK    I   I +A  L   L
Sbjct: 10 EFIIMINNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDL 69

Query: 78 WKLL 81
           KL 
Sbjct: 70 NKLF 73


>gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 112

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R +  +TQ  +    G + S  S +E+GK+ IN+  ++ +A  LDT +  LL
Sbjct: 12 IREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTIDSLL 67


>gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L
Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60


>gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 107

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + IRK+ KLTQ+E+  ++G   + IS +E G    +++N   L   L+     L
Sbjct: 9  LFCARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNVSADYL 68

Query: 81 L 81
          L
Sbjct: 69 L 69


>gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104]
          Length = 197

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R+E  L+  E+  R+G ++  +S++E G     ++ + +L   LD P  +L
Sbjct: 11 LVARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGNPTVETLALLGAALDMPARRL 70

Query: 81 L 81
          L
Sbjct: 71 L 71


>gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum
          H04402 065]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L
Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60


>gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L
Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60


>gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L
Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60


>gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 117

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RKE K+TQ+++    G +QS I  +E  +   + D +I LA+TL+T +  LL
Sbjct: 9  LRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYLL 61


>gi|260550240|ref|ZP_05824453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406768|gb|EEX00248.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|239503877|ref|ZP_04663187.1| Helix-turn-helix family protein [Acinetobacter baumannii AB900]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 189

 Score = 37.4 bits (85), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L
Sbjct: 10 KKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSL 60


>gi|293610621|ref|ZP_06692921.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826965|gb|EFF85330.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123811|gb|ADY83334.1| DNA-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains
          [Thermococcus sibiricus MM 739]
 gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains
          [Thermococcus sibiricus MM 739]
          Length = 186

 Score = 37.4 bits (85), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           +  RKE  +TQ+E+  R G  Q++I++LETGK
Sbjct: 13 IKRFRKELGITQEELAQRAGVTQAYIAKLETGK 45


>gi|224535292|ref|ZP_03675831.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224523100|gb|EEF92205.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 103

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R+ RK+ K+TQ+E+  + G A+S+I+ +E G++ I I +   +A  L
Sbjct: 48 RDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARAL 94


>gi|169634707|ref|YP_001708443.1| hypothetical protein ABSDF3388 [Acinetobacter baumannii SDF]
 gi|169794401|ref|YP_001712194.1| hypothetical protein ABAYE0206 [Acinetobacter baumannii AYE]
 gi|213159023|ref|YP_002321021.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|215481956|ref|YP_002324138.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|260556833|ref|ZP_05829050.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301345186|ref|ZP_07225927.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056]
 gi|301510677|ref|ZP_07235914.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058]
 gi|301595815|ref|ZP_07240823.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059]
 gi|332854786|ref|ZP_08435549.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332868898|ref|ZP_08438475.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|332872792|ref|ZP_08440757.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
 gi|169147328|emb|CAM85189.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|169153499|emb|CAP02656.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|193078630|gb|ABO13673.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
          17978]
 gi|213058183|gb|ACJ43085.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|213989083|gb|ACJ59382.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|260409439|gb|EEX02740.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332727788|gb|EGJ59192.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332733046|gb|EGJ64247.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|332738953|gb|EGJ69815.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
          Length = 182

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L
Sbjct: 7  IIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARL 66

Query: 81 LK 82
          ++
Sbjct: 67 ME 68


>gi|163756345|ref|ZP_02163459.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1]
 gi|161323697|gb|EDP95032.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1]
          Length = 492

 Score = 37.4 bits (85), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++IF    + IR +  L+   +   TG ++S+++E+E GK     D ++IL+  LD P
Sbjct: 7  KLIFGLKLKQIRTDKNLSLFGLSKITGLSKSYLNEIEKGKKYPKPDKIVILSEKLDVP 64


>gi|86138032|ref|ZP_01056607.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85825059|gb|EAQ45259.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 233

 Score = 37.4 bits (85), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F    +++R+  KLT K++   +G A S IS++E    +   D M+ LA  LDT + 
Sbjct: 35 RAAFGAMVQSLRRAQKLTLKQVSEASGLALSTISKIENSNLSPTYDVMLKLAAGLDTDIV 94

Query: 79 KLL 81
           +L
Sbjct: 95 SIL 97


>gi|260221082|emb|CBA29291.1| hypothetical protein Csp_A11410 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 97

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RK  KLTQ E   +   A++++S +E+GK+  ++  +  ++  L  PL KLL+
Sbjct: 13 RKIQKLTQIEFAEKCNIARNYLSTIESGKANPSLAVLFTISDQLGVPLCKLLQ 65


>gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM
          15053]
 gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM
          15053]
          Length = 138

 Score = 37.4 bits (85), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R +RK+ KLTQK++      ++   S  ET K T ++D+++ LA   +  L  L+
Sbjct: 6  LANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFYNVNLDSLV 65


>gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334]
 gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334]
          Length = 108

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R++R   K+TQ+E+  RT  +  +IS++E     I+++  + +   L+  L     P
Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVTLSDFFLP 69


>gi|319892577|ref|YP_004149452.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162273|gb|ADV05816.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius
          HKU10-03]
          Length = 66

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R  RK  KLTQ E+ +R   ++  ISE+E  K  ++I  +  +A  L    ++LLK
Sbjct: 9  NIRAYRKMCKLTQSELASRLKTSRQHISEIECCKRGLSIKMLEKMAKKLQVEPYQLLK 66


>gi|301166804|emb|CBW26381.1| hypothetical protein BMS_1526 [Bacteriovorax marinus SJ]
          Length = 215

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K DE  LS  IL           + RK++ LTQ E+  +TG  Q  +S++E+ + +++  
Sbjct: 21 KVDEYGLSRIIL-----------SARKKSGLTQSEVSKKTGITQGTLSKIESYQCSVSAK 69

Query: 65 NMIILAHTLDTP 76
          +  +L+  LD P
Sbjct: 70 HWFLLSKLLDIP 81


>gi|197120438|ref|YP_002132389.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170287|gb|ACG71260.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 134

 Score = 37.4 bits (85), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R+E  LTQK++  R G  QS IS++E G +T     +  LA  LD  +  + +P
Sbjct: 48  RRELGLTQKQLAGRVGIHQSEISDIERGAATPGYRTLAKLAIGLDAEVKLVPRP 101


>gi|68499972|gb|AAY97915.1| TrbA [Plasmid pMCBF1]
 gi|133711724|gb|ABO36544.1| TrbA protein [uncultured bacterium pMCBF6]
          Length = 104

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +T++E+  R+G + S++S+L TGK   ++  M  +A  LD PL  LL+
Sbjct: 1  MTKQELSERSGVSISFLSDLTTGKGNPSLKVMEAVAKALDVPLPLLLE 48


>gi|149179178|ref|ZP_01857746.1| transcriptional regulator, XRE family protein [Planctomyces maris
           DSM 8797]
 gi|148841996|gb|EDL56391.1| transcriptional regulator, XRE family protein [Planctomyces maris
           DSM 8797]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RK AK++Q+ +  +TG  QS IS LE+GK + +   +  +A  LD  + KLL P
Sbjct: 106 RKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSNATLKKIAAALDIEI-KLLDP 158


>gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus
          abyssi GE5]
 gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5]
          Length = 192

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          + + IRKE  +TQ+E+  + G  Q++I++LE GK
Sbjct: 12 DIKKIRKELGITQEELARKAGVTQAYIAKLEAGK 45


>gi|265764159|ref|ZP_06092727.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256767|gb|EEZ28113.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163497|emb|CBW23048.1| putative DNA binding protein [Bacteroides fragilis 638R]
          Length = 103

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R+ RK+ K+TQ+E+  + G A+S+I+ +E G++ I I +   +A  L
Sbjct: 48 RDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARAL 94


>gi|255009477|ref|ZP_05281603.1| hypothetical protein Bfra3_10082 [Bacteroides fragilis 3_1_12]
 gi|313147247|ref|ZP_07809440.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136014|gb|EFR53374.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 103

 Score = 37.4 bits (85), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R+ RK+ K+TQ+E+  + G A+S+I+ +E G++ I I +   +A  L
Sbjct: 48 RDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARAL 94


>gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45]
 gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45]
          Length = 213

 Score = 37.4 bits (85), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R +RK  ++T  ++  +TG +   +S++E G  + +++ M  LA+ L  PL +L  
Sbjct: 34 RELRKRQRMTGGDLAGKTGLSVGMLSKIENGVISPSLNTMSALANALGVPLVQLFS 89


>gi|331092438|ref|ZP_08341263.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401281|gb|EGG80870.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 190

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +N+R E K T K +   TG +  ++S+LE G ++I ID++  ++  LD  L
Sbjct: 12 KNLRTEKKYTLKYLSENTGLSIGFLSQLERGMTSIAIDSLDKISKVLDVEL 62


>gi|328676885|gb|AEB27755.1| Predicted transcriptional regulator [Francisella cf. novicida
          Fx1]
          Length = 75

 Score = 37.4 bits (85), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           R  RK+  LTQ ++   +G    +I E+E GKST +I  +I LA +L
Sbjct: 15 IRKARKKQGLTQADLAGISGLGIRFIGEVENGKSTAHIGKVIQLASSL 62


>gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM
          5427]
 gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 176

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RK+ KLTQKE+  + G A+  I + E G+   N++ +  LA TL    ++LL
Sbjct: 4  NNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYELL 61


>gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4]
 gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4]
          Length = 191

 Score = 37.4 bits (85), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 24/33 (72%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           R IRKE  +TQ+E+  + G  Q++I++LE+G+
Sbjct: 12 IRKIRKELGITQEELARKAGVTQAYIAKLESGR 44


>gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 67

 Score = 37.4 bits (85), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
          MI     + +RK    +QKE+   TG +QS+ISELE G K+  +I  +  +A  L+  + 
Sbjct: 1  MIPGKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKTNPSIKVIKRIAEVLEIDIC 60

Query: 79 KLL 81
          +L+
Sbjct: 61 QLV 63


>gi|291519992|emb|CBK75213.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 157

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 6   RDEPHLSDAIL---------RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
            D P LS  +L         R+R+I  N    + KE  +TQK++   TG  +S ISE + 
Sbjct: 33  EDCPELSSFMLKQLKVAARNRDRIIMNNQIFKVLKEKGITQKQLSKMTGIPESTISEWKN 92

Query: 57  GKSTINIDNMIILAHTLDTPLWKLLK 82
                 ID +++++  L      LLK
Sbjct: 93  KGKVPGIDKILLISEALGVSPNTLLK 118


>gi|164687455|ref|ZP_02211483.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM
          16795]
 gi|164603229|gb|EDQ96694.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM
          16795]
          Length = 69

 Score = 37.4 bits (85), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N  + +RKE KL+Q E+    G +++ +S +ETG+        ++L   LD   
Sbjct: 3  EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTVSSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
 gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
          Length = 172

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 35/48 (72%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +++RKE KLT KE+  +T  + S++S++E GKS++ ++++  +A  L+
Sbjct: 11 KSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALN 58


>gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 148

 Score = 37.4 bits (85), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +    +R+E  LTQ+++  R    +  +S  ETG++T  ID   ++A  LD P+ +
Sbjct: 1  MALKDILPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|148547381|ref|YP_001267483.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148511439|gb|ABQ78299.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 272

 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R    PH+S            + R +R++A L+Q E+   TG +Q  +S +ETG++  + 
Sbjct: 8  RSTPAPHISAG---------QHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASP 58

Query: 64 DNMIILAHTLDTPL 77
            +  L   LD PL
Sbjct: 59 GTLHALLSALDAPL 72


>gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11]
 gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11]
          Length = 189

 Score = 37.0 bits (84), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + R +RK   LT  ++  R G +  W+S++E  KS  +I ++  +A  LD P+  L 
Sbjct: 14 DLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIAKCLDVPMSMLF 70


>gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum
          thermopropionicum SI]
 gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum
          thermopropionicum SI]
          Length = 224

 Score = 37.0 bits (84), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R+E  LTQ E+  + G + + I+  E GK  I ID++  +A+ L  PL   L
Sbjct: 13 REEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYFL 64


>gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus
          polymyxa E681]
          Length = 115

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+IRK   L+Q+ +  + GF  S+I  +E  +  I++ N+  +A  L+  +++LL
Sbjct: 12 IRDIRKSKGLSQEALAEKAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67


>gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 79

 Score = 37.0 bits (84), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I     +  R EAKLTQ ++  +TG  Q  IS++E G     +D + I+   L+
Sbjct: 10 ILGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAKLDTLFIILSALN 63


>gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans
          PW2]
 gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans
          PW2]
          Length = 211

 Score = 37.0 bits (84), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M    N R IRK   LTQ ++  R G A++ +++ E G S   I  +  LA TL  P+
Sbjct: 1  MALPENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPV 58


>gi|312961260|ref|ZP_07775765.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|311284918|gb|EFQ63494.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 262

 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R IR++AKL+Q ++   TG +Q  +S +ETG++      +  L   LD PL
Sbjct: 11 LRQIRRQAKLSQLDLALITGVSQRHLSCIETGRAKAGAATLHTLLTALDAPL 62


>gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 141

 Score = 37.0 bits (84), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R    LTQ  I N TG +   IS +ETG + + +  +I LA+ LD  + +LL
Sbjct: 18 RARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANVLDVSVDELL 69


>gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
          YUAN-3]
 gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
          YUAN-3]
          Length = 262

 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK+A L+Q+++    G ++  +S+ E G+S  ++D +++L+      L +
Sbjct: 1  MEFSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|257437719|ref|ZP_05613474.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257200026|gb|EEU98310.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 95

 Score = 37.0 bits (84), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          L+  +  V    + RK + LTQKE+  RTG AQ+ IS+LE G +  ++  +  LA  +
Sbjct: 24 LQPELSLVQAMIDARKVSGLTQKELSERTGIAQADISKLENGNANPSLRTLQRLAAGM 81


>gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 184

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   L+     L
Sbjct: 9  VIAGSLRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGNPSVETLWALCVALEIQFADL 68

Query: 81 LKP 83
          + P
Sbjct: 69 IDP 71


>gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 222

 Score = 37.0 bits (84), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R +R +  LT  E   R G +++ +S++E  +++ ++  + +LA   D P+  L +
Sbjct: 42 NVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPVTSLFR 99


>gi|326204396|ref|ZP_08194254.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325985428|gb|EGD46266.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 86

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N  R IR E  LTQ E+  R G  + +I  +E+G +T + +   I+A +LD
Sbjct: 3  NWLRKIRDELNLTQAEVAKRVGVTRQFIGMIESGAATPHPETAKIIATSLD 53


>gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
 gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
          Length = 214

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 6  RDEPH-LSDAILRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          + +PH L DA  RE+ + V      R++R   ++T  E+  +TG +   +S++E G  + 
Sbjct: 12 KQDPHALRDA--REKNLEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISP 69

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          ++  +  LAH L  PL +L  
Sbjct: 70 SLTTISALAHALKVPLVQLFS 90


>gi|303230899|ref|ZP_07317643.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
 gi|302514412|gb|EFL56410.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
          Length = 91

 Score = 37.0 bits (84), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 5  KRDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          K  +P   ++ L+E+ +  +       R+ A LTQ+E+  R+G  QS I+ +E G +T +
Sbjct: 13 KLKDPQYKESYLKEKAMLASAVAITKAREAAGLTQRELAERSGVPQSTIARIERGYNT-S 71

Query: 63 IDNMIILAHTLD 74
          ID +  +A  L+
Sbjct: 72 IDTLSKIAFALN 83


>gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 192

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          ++P   D ++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D +
Sbjct: 3  EDPGDLDGLVRKRI------RALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQL 56

Query: 67 IILAHTLDTPLWKLLK 82
          + LA+ LDT L +L++
Sbjct: 57 VTLANALDTTLDQLVE 72


>gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 272

 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +N RKEA LTQ+++  +    +  +S  ETG+S  +ID   +LA  L  P
Sbjct: 8  QNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVP 57


>gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74]
 gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74]
          Length = 226

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 7/78 (8%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K+D+  L D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D
Sbjct: 2  KQDDDDL-DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALD 54

Query: 65 NMIILAHTLDTPLWKLLK 82
          +++ LA  LDT L +L++
Sbjct: 55 SLVTLARALDTSLDQLVE 72


>gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 125

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 39/66 (59%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +++ F    + +RKE  +TQ+E+ ++ G  ++ I+  ETG++  + + + ++A+ L T
Sbjct: 1  MTDKIKFKERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILST 60

Query: 76 PLWKLL 81
              LL
Sbjct: 61 TTDYLL 66


>gi|150018283|ref|YP_001310537.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904748|gb|ABR35581.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 68

 Score = 37.0 bits (84), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E ++  NN + +R E KL+Q ++    G +++ IS +ETG+        ++L   LD   
Sbjct: 2  EELVLHNNLKEVRTEQKLSQSQLAEMVGVSRNTISSIETGEFNPTAKLALVLCVALDKKF 61

Query: 78 WKLL 81
           +L 
Sbjct: 62 EELF 65


>gi|154508670|ref|ZP_02044312.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC
          17982]
 gi|153798304|gb|EDN80724.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC
          17982]
          Length = 156

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R  R++A LTQ E+   TG +QS ++++E+GK  ++
Sbjct: 14 RAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVS 49


>gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp.
          Marseille]
 gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp.
          Marseille]
          Length = 207

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +R     TQ ++   TGF + ++S++E  K    I  ++ +A  LDT L  LL+P
Sbjct: 26 LRTSRGFTQDKLALETGFTKGYLSKIENSKVIPPIGTLVKIAQVLDTDLSALLEP 80


>gi|83309581|ref|YP_419845.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944422|dbj|BAE49286.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 76

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N R +R +  L+Q E+      ++S++++LETGK   ++  +  LA  L+    
Sbjct: 8  RELFATNLRRLRHDKGLSQDELACDAEMSRSYLAQLETGKYHASLKIIGRLADVLEVDPV 67

Query: 79 KLLK 82
          + LK
Sbjct: 68 EFLK 71


>gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
 gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
          Length = 181

 Score = 37.0 bits (84), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT K++ N      S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 502

 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+ R E  LT +++  R G A S IS  E+G    +I  +  LA  LDT   +LL P
Sbjct: 41 RHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSAAELLDP 97


>gi|268317796|ref|YP_003291515.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM
          4252]
 gi|262335330|gb|ACY49127.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM
          4252]
          Length = 505

 Score = 37.0 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     + +R++  LT +++ +R G + S++SE+E GK     D +I LA        
Sbjct: 9  RFVLGLKLKALRQQRGLTLQDVASRAGLSVSYLSEIEKGKKFPKPDKLIDLASVFSVSYE 68

Query: 79 KLLKP 83
          +L+ P
Sbjct: 69 ELISP 73


>gi|126649566|ref|ZP_01721807.1| Transcriptional regulator, MerR family protein [Bacillus sp.
          B14905]
 gi|126593891|gb|EAZ87814.1| Transcriptional regulator, MerR family protein [Bacillus sp.
          B14905]
          Length = 129

 Score = 37.0 bits (84), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R IR    L+Q+E+  RTG   F++  +S +E G+S I +  + IL   LD P
Sbjct: 12 LRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLEILMKALDIP 65


>gi|148557504|ref|YP_001265086.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502694|gb|ABQ70948.1| transcriptional regulator, XRE family [Sphingomonas wittichii
          RW1]
          Length = 252

 Score = 37.0 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R +  L+ +E+  RTG   S +S+LE GK  +  D +++LA  L   + KL 
Sbjct: 43 LRAARLDKGLSLRELAARTGLPFSTLSKLENGKMGMTYDRLVLLAQALGVEIGKLF 98


>gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus
          ATCC 12755]
 gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus
          ATCC 12755]
          Length = 293

 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           ++ R    LTQKE+  R   +   IS+ E G    +I+ ++ LA  L TP+ +LLK
Sbjct: 9  LKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLK 65


>gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 186

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+++ L+  E+  + G A+S +S+LE+G    +I+ +  L   LD P  +L++
Sbjct: 19 RQKSGLSLSELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFARLIE 71


>gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus
          polymyxa SC2]
 gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein
          [Paenibacillus polymyxa SC2]
          Length = 115

 Score = 37.0 bits (84), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+IRK   L+Q+ +  + GF  S+I  +E  +  I++ N+  +A  L+  +++LL
Sbjct: 12 IRDIRKSKGLSQEALAEQAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67


>gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
          Length = 148

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +RK   LTQ+E+  +    +  IS  E+G  T ++D +  LA  LD  +  
Sbjct: 1  MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1]
 gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1]
          Length = 125

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +R+    TQ  + ++ G  +  +S LE+GK  I+I+ +++    LD P+ ++L
Sbjct: 19 QRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPIEEIL 76


>gi|84501835|ref|ZP_00999993.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597]
 gi|84389830|gb|EAQ02464.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597]
          Length = 85

 Score = 37.0 bits (84), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          RK A LTQ E+  R    QS+++ LE+G+  +++  +I+LA  L
Sbjct: 21 RKAAGLTQAELALRLRCHQSFVARLESGERRVDVVELIVLARAL 64


>gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605]
 gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605]
          Length = 230

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLWKL 80
           R  R+   LTQ  +  R G  ++ IS+ E+G +T N  N+I LA  L+ +P W L
Sbjct: 6  IREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWLL 61


>gi|225375217|ref|ZP_03752438.1| hypothetical protein ROSEINA2194_00842 [Roseburia inulinivorans
          DSM 16841]
 gi|225212884|gb|EEG95238.1| hypothetical protein ROSEINA2194_00842 [Roseburia inulinivorans
          DSM 16841]
          Length = 69

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          N  +  RK+A LTQ+E   R+G    ++ ELE GK T+ +D
Sbjct: 9  NYIKEERKKAGLTQEEFAMRSGLGLRFVRELEQGKETVRMD 49


>gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens
          DSM 30120]
 gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens
          DSM 30120]
          Length = 236

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F   +KE  L+Q+ + +  G  QS +++L  G + IN++N + LA  L+  +
Sbjct: 21 FEAKKKELGLSQESLGDAIGMGQSAVAQLLNGVNAINVENAVKLAEALEVSV 72


>gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila
          RKU-10]
 gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2]
 gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila
          RKU-10]
          Length = 176

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L
Sbjct: 5  EKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 58


>gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402]
 gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7]
 gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402]
 gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7]
          Length = 287

 Score = 37.0 bits (84), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    +RKE  L+Q+ + N  G ++  +S+ E  +++ + DN+I+LA      L  LLK
Sbjct: 19 NRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSLDDLLK 77


>gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88]
 gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88]
          Length = 219

 Score = 37.0 bits (84), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          N +  R EA ++QK++  + G ++++I+E+ETGK  IN +N+I
Sbjct: 7  NIKTYRLEANMSQKQLGKKIGVSENFINEIETGKRIIN-ENLI 48


>gi|26989372|ref|NP_744797.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24984232|gb|AAN68261.1|AE016460_7 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
 gi|313499269|gb|ADR60635.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 272

 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R    PH+S            + R +R++A L+Q E+   TG +Q  +S +ETG++  + 
Sbjct: 8  RSTPAPHISAG---------QHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASP 58

Query: 64 DNMIILAHTLDTPL 77
            +  L   LD PL
Sbjct: 59 GTLHALLSALDAPL 72


>gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    ++IR+   +TQ+++ + +G +  +I E+E G+   ++ ++  LA  LD P+ +L
Sbjct: 7  LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAEL 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|293189013|ref|ZP_06607745.1| putative toxin-antitoxin system, toxin component [Actinomyces
          odontolyticus F0309]
 gi|292822044|gb|EFF80971.1| putative toxin-antitoxin system, toxin component [Actinomyces
          odontolyticus F0309]
          Length = 156

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R  R++A LTQ E+   TG +QS ++++E+GK  ++
Sbjct: 14 RAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVS 49


>gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1]
 gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1]
          Length = 148

 Score = 37.0 bits (84), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +RK   LTQ+E+  +    +  IS  E+G  T ++D +  LA  LD  +  
Sbjct: 1  MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp.
          MP5ACTX8]
 gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp.
          MP5ACTX8]
          Length = 137

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R+ R +  ++Q +I  RTG  + ++S +E G +  +++ +  +A  LD PL +  
Sbjct: 26 TIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALDLPLSQFF 82


>gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176]
 gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176]
          Length = 209

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +F +  +  RK  K +Q EI    G  Q  + + ETG+ST +   +  LA  LDT
Sbjct: 1  MFADRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDT 55


>gi|261342972|ref|ZP_05970830.1| hypothetical protein ENTCAN_09574 [Enterobacter cancerogenus ATCC
          35316]
 gi|288314723|gb|EFC53661.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterobacter cancerogenus ATCC 35316]
          Length = 182

 Score = 37.0 bits (84), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 39 EIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          EI  R G A+S +S+LE+G    +++ +  L   LD P  +LL+P
Sbjct: 25 EIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARLLEP 69


>gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 127

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IR + KLTQ+E+  R  ++Q  +++ E G S  +I N++ +   L+  +  LL
Sbjct: 5  NLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLL 61


>gi|297196740|ref|ZP_06914138.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197720104|gb|EDY64012.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 104

 Score = 37.0 bits (84), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +R E   T  E+ +R+G A+  + +LE G++T ++     LAHT D P+ + L
Sbjct: 37 LRAERGWTFDELADRSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIERFL 89


>gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
 gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
          Length = 122

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I  NN + +RK+ +L Q E+  +   +Q  +   ETG++    D + ILA   D    
Sbjct: 6  RKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFFDVSTD 65

Query: 79 KLL 81
           LL
Sbjct: 66 YLL 68


>gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 213

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVN-NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          ++   +P  S+++  +  I V  N R++R+++ L+ +++  ++G +++ + ++ETGKS  
Sbjct: 6  KQVHADPQHSESVATKLSIIVGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAP 65

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
           I+ +  +A  L   +  L+ 
Sbjct: 66 TINLLGRIAEALQVSVPSLIS 86


>gi|160944249|ref|ZP_02091478.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium
          prausnitzii M21/2]
 gi|313113217|ref|ZP_07798837.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium cf. prausnitzii KLE1255]
 gi|158444431|gb|EDP21435.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103725|emb|CBL01269.1| transcriptional regulator, XRE family [Faecalibacterium
          prausnitzii SL3/3]
 gi|310624459|gb|EFQ07794.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 93

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 30/46 (65%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          + RKE+ LTQK++  RTG AQ+ IS+LE G +  ++  +  LA  +
Sbjct: 36 DARKESGLTQKQLSERTGIAQADISKLERGNANPSLRTLQRLAAGM 81


>gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
 gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris]
 gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
 gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis
          subsp. cremoris NZ9000]
          Length = 252

 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +RKEAKLTQ ++ ++ G  Q+     E   +   ++ +  LA   D P+ +
Sbjct: 1  MNFGQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|186684878|ref|YP_001868074.1| helix-turn-helix domain-containing protein [Nostoc punctiforme
          PCC 73102]
 gi|186467330|gb|ACC83131.1| helix-turn-helix domain protein [Nostoc punctiforme PCC 73102]
          Length = 82

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 24 NNFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N FR +    RK AKLTQ E+  +    QS++S+ E G+  +++   + +A  L+
Sbjct: 11 NRFRQLLIEARKAAKLTQAELSAKLKLPQSYVSKYERGERRLDVIKFLQVAQVLE 65


>gi|310827713|ref|YP_003960070.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308739447|gb|ADO37107.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 68

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E +I  N  + IRKE KL+Q  +    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MNEELILKNRLKEIRKEKKLSQSALAELVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC
          49814]
 gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 70

 Score = 37.0 bits (84), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F N+ + +RK  KLTQ+E+ +  G  +  I  +E GK + +++    +A TL+  L
Sbjct: 7  FSNHIQELRKAKKLTQQELADAIGMTRQTIVAIEKGKYSPSLEAAFRIAQTLEQSL 62


>gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 74

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          M ++N  R++R++   +Q++I +     Q   S+ E GK+ I +D+MI+LA
Sbjct: 1  MDYLNRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLA 51


>gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator
          MP104C]
 gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator
          MP104C]
          Length = 196

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 35/59 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+E+ L+Q+ +  + G +  ++S++E G+++ ++ ++  LA  L     +LL+
Sbjct: 6  ETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLLQ 64


>gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a]
          Length = 453

 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R  R  A  +Q+++    G++ S IS LETGKS++++D +  +A+ L  P
Sbjct: 16 RLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIP 65


>gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 100

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNM 66
          +    RKE  LTQ+E+  + G +Q  +SELE G+ +T+ +D +
Sbjct: 32 DLAQARKERDLTQREVAAKMGVSQCRVSELEAGRLATMRVDTL 74


>gi|254374210|ref|ZP_04989692.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571930|gb|EDN37584.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 75

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  RK+  LTQ ++   +G    +I E+E GKST +I  +I LA +L
Sbjct: 15 IKKARKKQGLTQADLTGISGLGTRFIGEVENGKSTAHIGKVIQLASSL 62


>gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum]
 gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum]
          Length = 81

 Score = 37.0 bits (84), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++RK   ++Q+E+ + +G  ++++S +E G+  I++ N++ LA  L      L+
Sbjct: 13 GRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLV 70


>gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila
          RKU-1]
          Length = 188

 Score = 37.0 bits (84), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 23 VNNF-------RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          V NF       R +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T
Sbjct: 9  VGNFVRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGT 68

Query: 76 PL 77
           L
Sbjct: 69 DL 70


>gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 186

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  R +R    L+  E+  R    ++ +SE+E+G+   NI+ +  L   LD PL  +L 
Sbjct: 8  DRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPLTGMLG 66


>gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC
          3537]
          Length = 134

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 40/63 (63%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF  N  ++RKEA ++Q+E+ ++    +  IS+ E G+ T ++  + ++A   +TP+ 
Sbjct: 2  KIIFSKNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVE 61

Query: 79 KLL 81
          +LL
Sbjct: 62 ELL 64


>gi|148257956|ref|YP_001242541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410129|gb|ABQ38635.1| Putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 58

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +TQ+++   +GF+Q +IS LE G+    +  +  L+  LD    +LLKP
Sbjct: 1  MTQEQLAEISGFSQQYISGLEKGQRNPTVVTIYELSVALDVDYLELLKP 49


>gi|134302287|ref|YP_001122256.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134050064|gb|ABO47135.1| helix-turn-helix DNA binding protein [Francisella tularensis
          subsp. tularensis WY96-3418]
          Length = 71

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  RK+  LTQ ++   +G    +I E+E GK+T +I  +I LA +L 
Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSLG 63


>gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SS3/4]
          Length = 116

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 35/55 (63%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R IR+E  +TQK++  +   + S I+ LE+G++ +++  +I +A  L+T +  LL
Sbjct: 18 RKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAEVLNTSISFLL 72


>gi|298491474|ref|YP_003721651.1| XRE family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298233392|gb|ADI64528.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708]
          Length = 529

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 12  SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           +D +L E++I        RK   L+Q+E+   TG +QSWI ++E+G+    +++ I+L  
Sbjct: 471 TDDLLAEQVI------QARKSIDLSQRELAKLTGKSQSWIRDVESGRLKPKLEDQILLRK 524

Query: 72  TLD 74
            L+
Sbjct: 525 VLN 527


>gi|149202477|ref|ZP_01879449.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
 gi|149143759|gb|EDM31793.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
          Length = 215

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 2  PRRKRDEPH--LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          P + RDE    L  AI RE        R  RK+  +T  E+ N T  +   +S++E G +
Sbjct: 16 PHKLRDEREKVLEVAIGRE-------VRAYRKKQNITVAELSNMTELSIGMLSKIENGNT 68

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
          + ++  +  LAH L  PL    K
Sbjct: 69 SPSLTTLQTLAHALSVPLTAFFK 91


>gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 212

 Score = 36.6 bits (83), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R++ E +L  AI R+        R++RK  ++T  E+  +TG +   +S++E G  + ++
Sbjct: 17 REQREKNLEVAIGRQ-------VRDLRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSL 69

Query: 64 DNMIILAHTLDTPLWKLLK 82
          + +  LA+ L  PL +L  
Sbjct: 70 NTLQALANALRVPLVQLFS 88


>gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088]
 gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088]
          Length = 68

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +NN R  R+E  LTQ+++    G ++  I+ +ETGK   ++     L+     P+  L K
Sbjct: 2  INNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALFK 61

Query: 83 P 83
          P
Sbjct: 62 P 62


>gi|308066906|ref|YP_003868511.1| transcriptional regulator yazB [Paenibacillus polymyxa E681]
 gi|305856185|gb|ADM67973.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus
          polymyxa E681]
          Length = 66

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      R  RK    TQ+E+  RTG + + +  +E G  T++ D + ++A TL+  +
Sbjct: 2  ENMQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNLIAQTLEIEV 61

Query: 78 WKL 80
           +L
Sbjct: 62 REL 64


>gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 280

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N     RK+  L+Q+E+  + G ++  +S+ E  +++ + DN+I+LA      L +LLK
Sbjct: 7  NRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLDELLK 65


>gi|295839211|ref|ZP_06826144.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197695663|gb|EDY42596.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 77

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L +R    +  R  R EA +TQ+ +  RTG  +  +  +E G  +  +D+++++A  L 
Sbjct: 10 VLDQRRAIGDRIRTARLEAAITQETLAERTGLDRKTVVRVEGGTHSTLLDHLLLIARALG 69

Query: 75 TPLWKLLK 82
            L  L++
Sbjct: 70 RLLADLVR 77


>gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 174

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 29  IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           IR++ KL+Q++     G  +  +S  E G S  NI+ +I+++   D P+ ++LK 
Sbjct: 50  IRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFDIPVDEMLKS 104


>gi|308229519|gb|ADO24172.1| C.AciIP [Arthrobacter citreus]
          Length = 75

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 37/63 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N +  R +   +Q+++ + +   +++IS +E  +  I ++N   +A+ L+ PL+KL
Sbjct: 6  LFAKNIKIYRTKNGYSQEKLADLSQLHRTYISSVERSQRNITLENAEKIANALNIPLYKL 65

Query: 81 LKP 83
          L P
Sbjct: 66 LLP 68


>gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM
          13279]
 gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM
          13279]
          Length = 152

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 20 MIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          MI + +    +R E  LTQ+E+ +R    +  +S  ETG +   ID + ++A  LD P+ 
Sbjct: 1  MILLKDVLVQLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVM 60

Query: 79 KLL 81
          +LL
Sbjct: 61 RLL 63


>gi|168830123|gb|ACA34351.1| transcription regulator [Paenibacillus polymyxa]
          Length = 63

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  RK    TQ+E+  RTG + + +  +E G  T++ D + I+A TL+  + +
Sbjct: 1  MQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNIIAQTLEIEVRE 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1]
 gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1]
          Length = 247

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          I  N+ + IRK  K+TQKE+   TGF Q+ IS  E G
Sbjct: 3  ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENG 39


>gi|300725156|ref|YP_003714484.1| putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297631701|emb|CBJ92414.1| Putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
          Length = 182

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  E+  R G A+S +S+LE G    +++ +  L   L+ P  +LL+P
Sbjct: 16 RARTGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARLLEP 69


>gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 71

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R +R+E+ LTQ+++   TG  +S+++++E G     ID M  +A  L   L +L + 
Sbjct: 14 RALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLGQLFEG 70


>gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC
          10782]
 gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC
          10782]
          Length = 245

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          I  N+ + IRK  K+TQKE+   TGF Q+ IS  E G
Sbjct: 3  ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENG 39


>gi|108805047|ref|YP_644984.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108766290|gb|ABG05172.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 86

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          L+Q+ ++   G AQS ISELE+GK +  +  + ILA  L     +L+K
Sbjct: 21 LSQQGLKRIAGVAQSTISELESGKRSAKLRTVRILAEALGVEPKELMK 68


>gi|24376233|ref|NP_720341.1| type II restriction-modification system activator, putative
          [Shewanella oneidensis MR-1]
 gi|24344698|gb|AAN52941.1| type II restriction-modification system activator [Shewanella
          oneidensis MR-1]
          Length = 75

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R  R +  ++Q+++    GF +++I  +E G+    +  + +LA TL+  + +LL
Sbjct: 12 LANNVRTFRLKNGISQEQLAEICGFHRTYIGSIERGERNTTLSTLEVLAKTLNVSIAQLL 71


>gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 186

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R+   ++  E+  R G A+S +S+LE G    +++ +  L   LD P  +L++P
Sbjct: 16 LRQERQRVGISLTELARRAGIAKSTLSQLEAGLGNPSMETLWALCVALDIPFSRLVEP 73


>gi|323481312|gb|ADX80751.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 306

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 20 MIFVNNFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTI--NIDNMIILAHTL 73
           IF NN  NI    RKE KLTQK++   TG +QS + + E G   I  N+D  +  A  +
Sbjct: 3  FIFENNSGNILKSLRKEQKLTQKKLSELTGISQSALVKYENGTRGISKNVDIALSKALNV 62

Query: 74 DTPL 77
          D+ L
Sbjct: 63 DSLL 66


>gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes
          MGAS10394]
 gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes
          MGAS10394]
          Length = 281

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N +  RK+ KLTQKE+  +   A + IS  E G++   +DN+  +      P  KLL
Sbjct: 40 DNIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIEQMTSIFGIPKSKLL 97


>gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 73

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L ++  F    + +R     TQ+E+   TG   ++I  +E G+  + +DN++ +A  L  
Sbjct: 3  LTDKQRFGRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGERNLGLDNLLKIARALGE 62

Query: 76 PLWKLL 81
          P   LL
Sbjct: 63 PPAALL 68


>gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 118

 Score = 36.6 bits (83), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RN R +  ++Q +I  RTG  + ++S +E G +  ++D +  +A  +D  L    
Sbjct: 8  RNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVALATFF 62


>gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 189

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           R EP   +AI   R+I     R+ RK+  ++   +  R+G +Q ++S+LE G +T ++ 
Sbjct: 2  SRPEP-TPEAIEVGRVI-----RSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLS 55

Query: 65 NMIILAHTLDTPLWKLLKP 83
          ++  +A  LD      L+P
Sbjct: 56 SIYRIAEALDVTPGTFLRP 74


>gi|315499167|ref|YP_004087971.1| transcriptional regulator, y4mf family [Asticcacaulis excentricus
           CB 48]
 gi|315417179|gb|ADU13820.1| transcriptional regulator, y4mF family [Asticcacaulis excentricus
           CB 48]
          Length = 208

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 27  RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R+ RK   LTQ++  + TG  + +ISELE+GK T+    ++ +   +   L   ++
Sbjct: 153 RDRRKSMGLTQQQFADITGVGRRFISELESGKPTLEFGRVLKVCQNVGIELMAAMR 208


>gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 200

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D ++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 9  DGLVRKRI------RALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARA 62

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 63 LDTTLDQLVE 72


>gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 71

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RK+A+++Q+E+  R G  ++++  +E G+   ++ N+  +A  L+ P+  L 
Sbjct: 10 FGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIAKALEVPISDLF 69


>gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514]
 gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514]
          Length = 73

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 35/65 (53%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + R +     R  RKEA  +Q+++  +   +  ++S +E GK +  +DN++ +A  L T 
Sbjct: 6  KHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLVKIAKALGTH 65

Query: 77 LWKLL 81
          +  L+
Sbjct: 66 VRDLV 70


>gi|225019346|ref|ZP_03708538.1| hypothetical protein CLOSTMETH_03299 [Clostridium methylpentosum
          DSM 5476]
 gi|224947977|gb|EEG29186.1| hypothetical protein CLOSTMETH_03299 [Clostridium methylpentosum
          DSM 5476]
          Length = 112

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ER   VN  + +RKE+  TQ+ I  + G AQ  IS  E  K  I +D +I  A    T
Sbjct: 2  ERGGIVNRLKELRKESSYTQEAIAAKLGTAQENISNYEIEKVPIPVDLLIQFAQLYHT 59


>gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str.
          JGS1721]
 gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str.
          JGS1721]
          Length = 141

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N  + +RKE  ++Q+++      ++  IS+ E+GK+  +IDN+I+L       L +
Sbjct: 1  MGFDNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
 gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
          Length = 181

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|213028985|ref|ZP_03343432.1| hypothetical protein Salmonelentericaenterica_45075 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 89

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +LL
Sbjct: 38 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLL 89


>gi|188587728|ref|YP_001920281.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska
          E43]
 gi|188498009|gb|ACD51145.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska
          E43]
          Length = 121

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 20 MIFVNNF-RNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M ++ NF +N R E KLT K++ + +G   S IS++ETGK+
Sbjct: 1  MSYIGNFLKNKRIEKKLTLKDLSDLSGVGPSTISDIETGKA 41


>gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 209

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  
Sbjct: 9  DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARA 62

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 63 LDTSLDQLVE 72


>gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum]
 gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum]
          Length = 81

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++RK   ++Q+E+ + +G  ++++S +E G+  I++ N++ LA  L      L+
Sbjct: 13 GRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVLGVDAGDLV 70


>gi|329943947|ref|ZP_08292216.1| restriction-modification system control element Bcll [Actinomyces
          sp. oral taxon 170 str. F0386]
 gi|328531380|gb|EGF58222.1| restriction-modification system control element Bcll [Actinomyces
          sp. oral taxon 170 str. F0386]
          Length = 61

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 34/58 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R++  L+Q+++  RT    S+I ++E G+  +++ N++ +AH LDT    L+  
Sbjct: 1  MRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHALDTDAGGLVSG 58


>gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C300]
 gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C300]
          Length = 152

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N  + +RK+ K+TQ+E+    G  +    + E G+S I + N   LA     PL  LL
Sbjct: 1  MNRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLL 59


>gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 181

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
          [Kineococcus radiotolerans SRS30216]
 gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
          [Kineococcus radiotolerans SRS30216]
          Length = 516

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R+ RK   LTQ ++  R G +QS +  +E G+  ++ID +  + H L   +  + +P
Sbjct: 23 RDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQDDIVSIGRP 79


>gi|325662590|ref|ZP_08151190.1| hypothetical protein HMPREF0490_01930 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325471087|gb|EGC74313.1| hypothetical protein HMPREF0490_01930 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 70

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M +    RN+R++  L+QK + +  G AQ+  S+ E  K  + ID +I L    D 
Sbjct: 1  MNYAERMRNLRQDNDLSQKNVADMLGVAQTTYSQYELEKRPMPIDYLIALCKFYDV 56


>gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
 gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
          Length = 164

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F N  + +R+ + + +KE+  + G      +  E G+    + N+I L+   D P+  
Sbjct: 10 MVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPVDV 69

Query: 80 LLKP 83
          L  P
Sbjct: 70 LCSP 73


>gi|224368109|ref|YP_002602272.1| HTH-type transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
 gi|223690825|gb|ACN14108.1| HTH-type transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
          Length = 211

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N+R++  L+ KE+ N TGF    + ++E GK    +  ++ L+  LD+ L +L+
Sbjct: 37 IKNLREKKGLSIKEVANLTGFDSQRLEDIENGKIQPQLGTVMKLSRALDSALGRLV 92


>gi|167563774|ref|ZP_02356690.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis EO147]
          Length = 81

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R +F      +RK    +Q+++   +G A+S++  +E G+  I + N+ +LA TL+ 
Sbjct: 6  RELFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLEV 62


>gi|295676649|ref|YP_003605173.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
 gi|295436492|gb|ADG15662.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 291

 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R++R    ++Q ++    GF+Q  IS +E+G+S    D ++ LA TLD PL
Sbjct: 22 WRDVRG---VSQLDLSLEAGFSQRQISFIESGRSVPGRDTLLTLAQTLDVPL 70


>gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293]
 gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293]
          Length = 61

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N    +RK+  +TQ+E+  + G  ++++S LE GK   ++D  + ++  L + + K+ K
Sbjct: 1  MNQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60


>gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus
          ATCC 19977]
 gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium
          abscessus]
          Length = 173

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 34/55 (61%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R +R+E  LT +E+ +RTG  +S++S++E   ST ++   + +A  LD  + +L 
Sbjct: 6  RALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLF 60


>gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8]
 gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 176

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L
Sbjct: 5  EKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 58


>gi|258406621|ref|YP_003199362.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798848|gb|ACV69784.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 117

 Score = 36.6 bits (83), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R  R  + LTQ E+  +TG AQS +S +E GK  I  D    LA  L+
Sbjct: 62  LRAARNRSGLTQVELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLN 110


>gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 243

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  
Sbjct: 9  DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARA 62

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 63 LDTSLDQLVE 72


>gi|294617175|ref|ZP_06696830.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium E1679]
 gi|291596575|gb|EFF27813.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium E1679]
          Length = 221

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  R+  KLTQKE+  + G +   IS  E  ++  +++ + +L HTL  P+
Sbjct: 8  RTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPI 58


>gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 184

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R++A L+  E+  R G A+S +S+LE+G    +++ +  L+  L     +L++P
Sbjct: 18 RRKAGLSLAELARRAGIAKSTLSQLESGSGNPSVETIWALSTALGVSFSQLVQP 71


>gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC
          3626]
 gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC
          3626]
          Length = 141

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N  + +RKE  ++Q+++      ++  IS+ E+GK+  +IDN+I+L       L +
Sbjct: 1  MGFNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|56708158|ref|YP_170054.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89256451|ref|YP_513813.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica LVS]
 gi|110670629|ref|YP_667186.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115314886|ref|YP_763609.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica OSU18]
 gi|156502554|ref|YP_001428619.1| helix-turn-helix domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010327|ref|ZP_02275258.1| hypothetical protein Ftulh_06310 [Francisella tularensis subsp.
          holarctica FSC200]
 gi|187931886|ref|YP_001891871.1| transcriptional regulator [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224457260|ref|ZP_03665733.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254367787|ref|ZP_04983808.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica 257]
 gi|254370643|ref|ZP_04986648.1| hypothetical protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874966|ref|ZP_05247676.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|290953909|ref|ZP_06558530.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295312709|ref|ZP_06803452.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica URFT1]
 gi|56604650|emb|CAG45708.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89144282|emb|CAJ79565.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica LVS]
 gi|110320962|emb|CAL09091.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115129785|gb|ABI82972.1| possible transcriptional regulator [Francisella tularensis subsp.
          holarctica OSU18]
 gi|134253598|gb|EBA52692.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica 257]
 gi|151568886|gb|EDN34540.1| hypothetical protein FTBG_00435 [Francisella tularensis subsp.
          tularensis FSC033]
 gi|156253157|gb|ABU61663.1| helix-turn-helix domain protein [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|187712795|gb|ACD31092.1| transcriptional regulator [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840965|gb|EET19401.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|282159373|gb|ADA78764.1| hypothetical protein NE061598_06205 [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 75

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           R  RK+  LTQ ++   +G    +I E+E GK+T +I  +I LA +L
Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSL 62


>gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 241

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  
Sbjct: 9  DSLVRKRV------RALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARA 62

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 63 LDTSLDQLVE 72


>gi|222053496|ref|YP_002535858.1| plasmid maintenance system antidote protein, XRE family [Geobacter
           sp. FRC-32]
 gi|221562785|gb|ACM18757.1| plasmid maintenance system antidote protein, XRE family [Geobacter
           sp. FRC-32]
          Length = 116

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 27/56 (48%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R    LTQK +   TG  Q  ISE+E GK +I  +    LA  L+    +LL
Sbjct: 61  LRAYRNREGLTQKRLAEMTGIPQHHISEMENGKRSIGKERAKRLAEALNCDYRRLL 116


>gi|293567401|ref|ZP_06678750.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium E1071]
 gi|291589918|gb|EFF21717.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium E1071]
          Length = 221

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  R+  KLTQKE+  + G +   IS  E  ++  +++ + +L HTL  P+
Sbjct: 8  RTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPI 58


>gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC
          27756]
 gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC
          27756]
          Length = 126

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R E  LTQK++    G A S I + E+G     I+ +  +A  LD P+ +LL
Sbjct: 9  IRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64


>gi|288962833|ref|YP_003453127.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288915099|dbj|BAI76583.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 226

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +  R+   LT K++  RTG A S +S++E G+ ++  D ++ L   L   + +L +P
Sbjct: 26 LKAARRARGLTLKQVAERTGMALSTLSKVENGQMSLTYDKLLQLTAGLKIEIAELFEP 83


>gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
 gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
          Length = 205

 Score = 36.6 bits (83), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++RK  KLT   + + +G A S IS++E G  +  +D ++ LA  LD  + +L+
Sbjct: 11 LRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQLI 66


>gi|297342817|gb|ADI33756.1| control protein [Shigella boydii]
          Length = 75

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK   +TQK +    G  QS+IS+ ETG+  I+   +I + + L  P + L+
Sbjct: 18 RKRIGVTQKMLSEALGKPQSYISKYETGERRIDAIELIDICNELGVPFYNLI 69


>gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 206

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R    QS +S +E G+  + +D ++ LA  
Sbjct: 12 DSLVRKRI------RALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLVTLARA 65

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 66 LDTSLDQLVE 75


>gi|169344358|ref|ZP_02865331.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297483|gb|EDS79590.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 105

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 25 NFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK  + K+TQ+++   TG ++S++S++E  +   ++D  I LA  LD  +  L+
Sbjct: 6  NLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTVNDLV 64


>gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
 gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
 gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|84514580|ref|ZP_01001944.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
 gi|84511631|gb|EAQ08084.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
          Length = 189

 Score = 36.2 bits (82), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          + R +RK   LT   +  R G +  W+S++E   S+ ++D++  LA  LD     LL 
Sbjct: 16 DLRALRKARGLTLTALAERVGRSVGWLSQVERDLSSASVDDIAALARVLDVATSSLLA 73


>gi|282599735|ref|ZP_05971683.2| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282568432|gb|EFB73967.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 201

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+++ L+  E+  + G A+S +S+LE+G    +I+ +  L   LD P  +L++
Sbjct: 34 RQKSGLSISELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFSRLIE 86


>gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|69246897|ref|ZP_00604172.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|257879186|ref|ZP_05658839.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|257881995|ref|ZP_05661648.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,502]
 gi|257890016|ref|ZP_05669669.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,410]
 gi|258615585|ref|ZP_05713355.1| transcriptional regulator, xre family protein [Enterococcus
          faecium DO]
 gi|260560167|ref|ZP_05832344.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|293559524|ref|ZP_06676061.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium E1162]
 gi|294621805|ref|ZP_06700963.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium U0317]
 gi|314947447|ref|ZP_07850866.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|68195026|gb|EAN09490.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|257813414|gb|EEV42172.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|257817653|gb|EEV44981.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,502]
 gi|257826376|gb|EEV53002.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,410]
 gi|260073734|gb|EEW62059.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|291598588|gb|EFF29647.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium U0317]
 gi|291606586|gb|EFF35983.1| transcriptional regulator, xre family, putative [Enterococcus
          faecium E1162]
 gi|313646105|gb|EFS10685.1| helix-turn-helix protein [Enterococcus faecium TX0082]
          Length = 221

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  R+  KLTQKE+  + G +   IS  E  ++  +++ + +L HTL  P+
Sbjct: 8  RTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPI 58


>gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA]
 gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA]
          Length = 124

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 5  KRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +++ P   D ++++   I   N R +RK   LTQ+ +    G   S IS +E G+   ++
Sbjct: 6  EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 65

Query: 64 DNMIILAHTLDT 75
           +MI L   L+ 
Sbjct: 66 PDMIKLCRALEA 77


>gi|317055421|ref|YP_004103888.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447690|gb|ADU21254.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 74

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +NI +       +++ R GF     I +   G +   IDN+IILA   DTP+ K++
Sbjct: 11 NNIKNIIRSKGFKISDVQARCGFNTPQAIFKWMRGDAVPTIDNLIILADMFDTPIDKII 69


>gi|260885325|ref|ZP_05734776.2| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella tannerae ATCC 51259]
 gi|260852826|gb|EEX72695.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella tannerae ATCC 51259]
          Length = 81

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57
          RKEAKLTQ E+  R G  +S+IS++E G
Sbjct: 26 RKEAKLTQSELAKRVGTTKSYISKIENG 53


>gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus
          thermophilus]
          Length = 111

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F    + +RK+A LTQ E+ ++ G  QS  ++ E GK     +N++ +A  L+  +
Sbjct: 1  MEFSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSV 58


>gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 179

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 33/52 (63%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N  RN+R++  LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T
Sbjct: 5  NKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGT 56


>gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241]
 gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 139

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +N +  RK A LTQKE+  + G A+  I + E+ K     + ++ +A  L+  L+ 
Sbjct: 1  MSVGDNIKKARKNAGLTQKELAEKCGAAEITIRQYESSKREPRNEQLMKIARLLNVELYD 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 293

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R    LTQKE+  R   +   IS+ E G    +I+ ++ LA  L TP+ +LLK
Sbjct: 9  LKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLK 65


>gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 293

 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R    LTQKE+  R   +   IS+ E G    +I+ ++ LA  L TP+ +LLK
Sbjct: 9  LKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLK 65


>gi|325983748|ref|YP_004296149.1| helix-turn-helix domain-containing protein [Nitrosomonas sp.
          AL212]
 gi|325533267|gb|ADZ27987.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212]
          Length = 120

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +I   N   I +E K+T+ E+  + G + S+I+EL   K+  ++  +  +A  LDTPL
Sbjct: 4  LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPL 61


>gi|167757680|ref|ZP_02429807.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC
          35704]
 gi|167664700|gb|EDS08830.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC
          35704]
          Length = 76

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          MI+ +  R +R+++ L+QK I +  G  Q+  S+ E GK ++ ++ +I L  
Sbjct: 9  MIYRDRLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQ 60


>gi|258543862|ref|ZP_05704096.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC
          15826]
 gi|258520902|gb|EEV89761.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC
          15826]
          Length = 85

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E   +++I   R+ F  N R +R+   ++Q+E+    G ++ ++S++E G   + ID M 
Sbjct: 3  EAQSTESIPEIRLRFAQNLRTLRRLKNISQEELAFSAGISRVYLSDVERGNRAVTIDVMG 62

Query: 68 ILA 70
           LA
Sbjct: 63 KLA 65


>gi|325980837|ref|YP_004293240.1| helix-turn-helix domain-containing protein [Nitrosomonas sp.
          AL212]
 gi|325533342|gb|ADZ28061.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212]
          Length = 120

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +I   N   I +E K+T+ E+  + G + S+I+EL   K+  ++  +  +A  LDTPL
Sbjct: 4  LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPL 61


>gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
 gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L]
 gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L]
 gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|146313711|ref|YP_001178785.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145320587|gb|ABP62734.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 182

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+  EI  R G A+S +S+LE+G    +++ +  L   L  P  +LL+P
Sbjct: 16 RTRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALGIPFARLLEP 69


>gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
 gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202]
 gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202]
          Length = 127

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RKE  LT   +  + G AQ  +S  E G + IN+ +++ +A  LDT +
Sbjct: 21 RKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTSI 68


>gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W]
 gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
 gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W]
 gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187]
 gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1]
 gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187]
 gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1]
 gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|147678779|ref|YP_001212994.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146274876|dbj|BAF60625.1| hypothetical transcriptional regulator [Pelotomaculum
          thermopropionicum SI]
          Length = 97

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 29/49 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RKE  +TQK++ ++ G  Q  +S +E+ +   N  N++ +A  LD+ + 
Sbjct: 45 RKEKGMTQKDVADKAGLTQQMVSRIESREHLPNYRNLVKIADALDSKIQ 93


>gi|269837331|ref|YP_003319559.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269786594|gb|ACZ38737.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 146

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          F    +  R+EA+ +Q  +    GF  S++S LE+G  T   + ++ LA  L
Sbjct: 12 FAELLKRFREEARTSQSRLAESAGFDHSYVSRLESGNRTPTREAVVKLADAL 63


>gi|218247603|ref|YP_002372974.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218168081|gb|ACK66818.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 173

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          R+      + +RK+  LTQK++  + G  QSW+S+LE+ 
Sbjct: 35 RISLTQAMKQLRKKVGLTQKQLAEKLGVTQSWVSKLESA 73


>gi|319783030|ref|YP_004142506.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168918|gb|ADV12456.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 187

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   + R +RK   LT  EI  + G +  W+S++E G ST ++ ++   A     P+
Sbjct: 8  VLAGDIRALRKARGLTLAEIGLKLGRSVGWVSQVERGLSTPSLGDLRAFAELFGVPI 64


>gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|225017295|ref|ZP_03706487.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum
          DSM 5476]
 gi|224949912|gb|EEG31121.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum
          DSM 5476]
          Length = 81

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRT-----GFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          N R+IRK+ KLTQ ++         G  +S  +++E G   I    +I +A  LD PL +
Sbjct: 14 NIRSIRKQKKLTQMDVVRELELAGLGTTRSSYAKIEAGIQHIYASELIAIAEILDVPLTE 73

Query: 80 LLK 82
          L +
Sbjct: 74 LFR 76


>gi|317494137|ref|ZP_07952553.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316917910|gb|EFV39253.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 265

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R +  +TQ+E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 4  NNIKQLRTQLSITQRELAYMVGTSQQQIQRIETGKVAAKLGLAQTICNALDKPL 57


>gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI]
 gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar
          anthracis str. CI]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10]
          Length = 224

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M   ++ +  RK AKLTQ ++  R G  Q+ IS LE GKS        + A    + LW
Sbjct: 1  MELKDSIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGTAYIAQLAAACGVSALW 59


>gi|83589153|ref|YP_429162.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572067|gb|ABC18619.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 74

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + IR    L+Q ++  ++G AQS+I ++E+G  +  +  +  LA  L+ P
Sbjct: 10 LKQIRASKNLSQYQLSKKSGVAQSYIHDIESGAKSPTLRTLEKLAAALEVP 60


>gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
 gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|241518608|ref|YP_002979236.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863021|gb|ACS60685.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 72

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N R +R+  KL+Q+E+ +R    +++IS LE    + +I+ +  LA  L     
Sbjct: 4  RETFARNLRTLRQARKLSQEELAHRASVDRTYISSLERCVYSPSIEVLDRLAAVLGVEPA 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar konkukian str. 97-27]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 70

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +R+E  +T +E+  + G +QS+I  +E G     +  +I +A  L+  L  L++
Sbjct: 11 LKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDLAALVE 67


>gi|254003130|ref|YP_003052596.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4]
 gi|253987213|gb|ACT52069.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4]
          Length = 77

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    R IR ++  TQ+ +   +G  +S+IS +E G+S+  +D ++ L   LD  L  L
Sbjct: 8  FGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALDISLSYL 66


>gi|167750339|ref|ZP_02422466.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702]
 gi|167656699|gb|EDS00829.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702]
          Length = 93

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + RK   +TQK +  +TG AQ  IS+LE G S  ++  +  LA  +D  L
Sbjct: 37 DARKSKGITQKTLSEKTGIAQGDISKLENGNSNPSLRTLCRLAAGMDMKL 86


>gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187]
 gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187]
          Length = 73

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N    +RK+  +TQ+E+  + G  ++++S LE GK   ++D  + ++  L + + K+ K
Sbjct: 1  MNQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60


>gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 181

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|312888681|ref|ZP_07748249.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311298848|gb|EFQ75949.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 81

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +SD   +  ++F  + +++RKE KLT +++  R       I ++E+GK  I +  +I LA
Sbjct: 2  ISDLDKKVLILFGKHHKSLRKERKLTYRQMAQRCNIDYGDIQKIESGKINITMLTLIELA 61

Query: 71 HTLDTPLWKLL 81
            L+ P   LL
Sbjct: 62 KGLNLPPKDLL 72


>gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 108

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +R+   LTQ  +    G A   IS +E+ + + ++D MI +A  L  PL  L
Sbjct: 5  LFGARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLPLEAL 64

Query: 81 L 81
          L
Sbjct: 65 L 65


>gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp.
          1_1_41FAA]
 gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp.
          1_1_41FAA]
          Length = 184

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 35/53 (66%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  L++
Sbjct: 11 RNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLIE 63


>gi|141422|sp|P14307|YSMA_SERMA RecName: Full=Uncharacterized HTH-type transcriptional regulator
          in smaI restriction system 5'region
 gi|581714|emb|CAA34477.1| unnamed protein product [Serratia marcescens]
          Length = 84

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R+ R    L+Q+++   +G  +++I  +E  +  + +  +IILA  L+T + KL
Sbjct: 14 ILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILAKALNTSVPKL 73

Query: 81 L 81
          L
Sbjct: 74 L 74


>gi|238760729|ref|ZP_04621847.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC
          35236]
 gi|238701055|gb|EEP93654.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC
          35236]
 gi|318604154|emb|CBY25652.1| hypotethical transcriptional regulator [Yersinia enterocolitica
          subsp. palearctica Y11]
 gi|318605347|emb|CBY26845.1| hypothetical protein Y11_25291 [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 105

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 33/55 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + IR    + Q E+ ++   ++S++SELE+GK T++ D +   ++  D P+  L+
Sbjct: 7  KTIRLFHNIKQSELADKLCISKSYLSELESGKKTVSFDILEKYSNNFDIPVSSLV 61


>gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 116

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R  R +  ++Q +I  RTG  + ++S +E G +  +++ +  +A  LD PL +  
Sbjct: 5  GTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQFF 62


>gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 184

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 35/53 (66%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  L++
Sbjct: 11 RNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLIE 63


>gi|154252608|ref|YP_001413432.1| helix-turn-helix domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156558|gb|ABS63775.1| helix-turn-helix domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 126

 Score = 36.2 bits (82), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 7/62 (11%)

Query: 23  VNNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           + +FRN+       R    L+Q+E+ +  G  + ++SELE GK+T+ I  ++ +   L  
Sbjct: 60  IQSFRNLGDLVRTARITKDLSQQELADMAGVGRRFVSELENGKATLEIGRVLKVCQALGV 119

Query: 76  PL 77
            L
Sbjct: 120 DL 121


>gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 225

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          F     ++R E  LTQ+E+    G A S IS+ E+GKS   +  ++ LA  L
Sbjct: 5  FAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADAL 56


>gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC
           19061]
 gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC
           19061]
          Length = 291

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 9   PHLSDAILRERMIFVNNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           PH+SD  + + +      +NI       RK   LT   +    G +Q  IS  E GK+ I
Sbjct: 88  PHVSDGFIMDTLTTGAVTKNIGLRIQIWRKTMMLTAAALGLSVGLSQQQISRNEHGKNRI 147

Query: 62  NIDNMIILAHTLDTPL 77
           +ID+++ +A  L  P+
Sbjct: 148 HIDHLVNIALALGIPI 163


>gi|313906268|ref|ZP_07839612.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313468888|gb|EFR64246.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 96

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 4  RKRDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +K ++P  + A   ++  M  +    + R    +TQKE+  RTG AQ+ IS+LE G    
Sbjct: 9  KKMNDPEFAKAYEEIQPEMNVIRAIIDARISQNMTQKELAERTGIAQTEISKLENGTRNP 68

Query: 62 NIDNMIILAHTLDTPL 77
          +I  +  LA  +D  L
Sbjct: 69 SIKLLQRLAEGMDMVL 84


>gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 141

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 5  KRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +++ P   D ++++   I   N R +RK   LTQ+ +    G   S IS +E G+   ++
Sbjct: 23 EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 82

Query: 64 DNMIILAHTLDT 75
           +MI L   L+ 
Sbjct: 83 PDMIKLCRALEA 94


>gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 533

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R+  KL+Q+ +  R G +QSW+ ++E G+  ++ D+  +L   LD
Sbjct: 488 RQRQKLSQRSLAERLGKSQSWVRDIENGRFKVSRDDQALLRKELD 532


>gi|200387340|ref|ZP_03213952.1| helix-turn-helix domain protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|199604438|gb|EDZ02983.1| helix-turn-helix domain protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
          Length = 265

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R +  +TQ+E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 4  NNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57


>gi|126700770|ref|YP_001089667.1| putative phage transcriptional regulator [Clostridium difficile
          630]
 gi|115252207|emb|CAJ70046.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 66

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKLL 81
          N +  R +  L Q+E+ +R G ++ ++S LETGK+   + D MI L+  LDT + +L 
Sbjct: 4  NLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61


>gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM]
 gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 17 RERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          +ER++ V      R++R+  ++T  ++   TG +   +S++E G ++ ++  ++ LA  L
Sbjct: 24 KERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSASLTTLVTLARAL 83

Query: 74 DTPLWKLLK 82
            P+    K
Sbjct: 84 SVPITDFFK 92


>gi|188583054|ref|YP_001926499.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179346552|gb|ACB81964.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 79

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R IR E  L+Q  + +     +++IS +E G   ++ID +  LA  L    W
Sbjct: 10 REILATNLRRIRAEKGLSQDALADLCEIDRTYISGVERGLRNVSIDTLERLATGLRLEPW 69

Query: 79 KLLK 82
           L++
Sbjct: 70 LLIR 73


>gi|113461078|ref|YP_719146.1| hypothetical protein HS_0935 [Haemophilus somnus 129PT]
 gi|112823121|gb|ABI25210.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 143

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R  R+  K+TQ+ +  R   +++  ++ E G+S I I+ ++ +A  L+ PL  L+
Sbjct: 10 NIRTFRENKKMTQEMMAERLNVSKTCYAKWERGESQIRIERLVQIAQILEVPLEDLM 66


>gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 85

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R  R    +TQ E+ +++G + + I  LE+GK T+++  +  +   LD     LL  
Sbjct: 16 NEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFAICKVLDVDPGVLLDA 75


>gi|254497228|ref|ZP_05110037.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353552|gb|EET12278.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 84

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R     +Q+EI + +G  ++++  +E G+  I+I N+I +A  L+  +  L+
Sbjct: 15 IRTLRTSEGYSQEEIADASGMGRTYMGRVERGEQNISIQNLIQIAFALNVEVGVLV 70


>gi|254976734|ref|ZP_05273206.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255094118|ref|ZP_05323596.1| putative phage transcriptional regulator [Clostridium difficile
          CIP 107932]
 gi|255315869|ref|ZP_05357452.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255518530|ref|ZP_05386206.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255651649|ref|ZP_05398551.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260684686|ref|YP_003215971.1| putative phage transcriptional regulator [Clostridium difficile
          CD196]
 gi|260688344|ref|YP_003219478.1| putative phage transcriptional regulator [Clostridium difficile
          R20291]
 gi|306521450|ref|ZP_07407797.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|260210849|emb|CBA65944.1| putative phage transcriptional regulator [Clostridium difficile
          CD196]
 gi|260214361|emb|CBE06742.1| putative phage transcriptional regulator [Clostridium difficile
          R20291]
          Length = 66

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKLL 81
          N +  R +  L Q+E+ +R G ++ ++S LETGK+   + D MI L+  LDT + +L 
Sbjct: 4  NLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61


>gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273]
 gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 370

 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N R +R   + +QKE+    G +   I  LE  KS   + ++  +A  LD PL    +P
Sbjct: 9  NVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSEPRMSSLQAIARALDVPLQDFFRP 67


>gi|333024924|ref|ZP_08452988.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332744776|gb|EGJ75217.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 266

 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R+  + +Q+E+ +R+G +   +S +ETGK+    + ++ L+  LD PL
Sbjct: 5  LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 56


>gi|319647195|ref|ZP_08001417.1| ImmF control region protein [Bacillus sp. BT1B_CT2]
 gi|317390542|gb|EFV71347.1| ImmF control region protein [Bacillus sp. BT1B_CT2]
          Length = 79

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R +     +N R + KLTQ E+  +TG ++S+IS++E G+       +  LA  +D  L
Sbjct: 3  DRKLLGALIKNQRCKKKLTQLELAEQTGLSRSYISDIENGRYIPGASTLTSLAICIDLDL 62


>gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM
          13280]
 gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM
          13280]
          Length = 155

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  +     R+E  LTQ+E+  R    +  +S  ETG +   ID + ++A  LD P+ +
Sbjct: 2  ILLKDALAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTR 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810]
 gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810]
          Length = 186

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R    L+  E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L++
Sbjct: 16 LRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDELVE 72


>gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55]
          Length = 116

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 32/57 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I     RN RK A  +Q+ +  + G   +++ ++E G+S  ++ ++  +A+ L+ PL
Sbjct: 9  IIGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPL 65


>gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC
          3773]
          Length = 183

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          MIF N  +  RK+  LTQ ++ N+   +   IS  ETGK+  +I+N+I+++  L+  L
Sbjct: 1  MIFHNLIKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSL 58


>gi|291561683|emb|CBL40482.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SS3/4]
          Length = 68

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + + +I  NN + +R E KL+Q  +    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MNDELILKNNLKQVRTEKKLSQSALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|318056750|ref|ZP_07975473.1| transcriptional regulator, XRE family protein [Streptomyces sp.
          SA3_actG]
 gi|318079624|ref|ZP_07986956.1| transcriptional regulator, XRE family protein [Streptomyces sp.
          SA3_actF]
          Length = 266

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R+  + +Q+E+ +R+G +   +S +ETGK+    + ++ L+  LD PL
Sbjct: 5  LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 56


>gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
          Length = 354

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +  RK+ KLTQ ++  R   ++S IS  E G    +I  +I LA+ ++  +  L
Sbjct: 5  VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64

Query: 81 L 81
           
Sbjct: 65 F 65


>gi|34500490|ref|NP_904261.1| hypothetical protein pUO1_12 [Delftia acidovorans]
 gi|319765115|ref|YP_004129051.1| hypothetical protein Alide_4472 [Alicycliphilus denitrificans BC]
 gi|34013311|dbj|BAC81984.1| TrbA [Delftia acidovorans]
 gi|317119802|gb|ADV02289.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
          Length = 120

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ NR+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSNRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 200

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 12 DSLVRKRI------RALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARA 65

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 66 LDTTLDQLVE 75


>gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
          Length = 217

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK---STINIDNMIILAHTLDTPLWKLL 81
           + +RK+  +TQ E+  R+G  +++IS+LE+GK   +T+ I     LA  LD     LL
Sbjct: 11 LKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQK--LARGLDISTSALL 67


>gi|186685279|ref|YP_001868475.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186467731|gb|ACC83532.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
          73102]
          Length = 237

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 1  MPRRKRDEPH--LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          + ++  DEP   L+  +   R+   +  R IR +A LTQ ++  + G  Q+ +S+LE+  
Sbjct: 10 LQQKVSDEPEVILAGKLEYLRLYLTDAMREIRNKAGLTQAQLAQKLGVKQAAVSKLESAL 69

Query: 59 STINIDNMIILAHTLDTPL 77
              +++++   H L   L
Sbjct: 70 KEHELESVLHYLHALGANL 88


>gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 200

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 12 DSLVRKRI------RALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARA 65

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 66 LDTTLDQLVE 75


>gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075]
 gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075]
 gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463]
          Length = 66

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N+ R  RK+ K++Q E+  R G A+  I+ +E  K   +++  + LAH L T L  L 
Sbjct: 1  MNHVREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLF 59


>gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
 gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter
          bemidjiensis Bem]
 gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter
          bemidjiensis Bem]
          Length = 110

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +N R +RK    +Q+E+      +  ++ E+E G    ++D+++ +A+ L  P+ 
Sbjct: 8  RQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIA 67

Query: 79 KLL 81
          +L 
Sbjct: 68 ELF 70


>gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM
          17241]
 gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM
          17241]
          Length = 110

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R IRK   L+Q+ +  R G + + +S +ETG + +++  ++ LA  LD
Sbjct: 10 IRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALD 58


>gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909]
 gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1]
 gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909]
 gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1]
          Length = 180

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     R +R E +LTQ+E+ +RT   + +IS++E   ++ +I  ++ +   L T L +
Sbjct: 1  MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|213691431|ref|YP_002322017.1| helix-turn-helix domain protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213522892|gb|ACJ51639.1| helix-turn-helix domain protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320457502|dbj|BAJ68123.1| hypothetical protein BLIJ_0529 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 401

 Score = 35.8 bits (81), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+   +TQKE+  R+G +Q+ +S+L+ G  + N  + + L+  LD P+
Sbjct: 26 RRLEGVTQKELSTRSGLSQAKLSKLQNGIISFNESDAVKLSGALDYPI 73


>gi|227495327|ref|ZP_03925643.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
 gi|226831197|gb|EEH63580.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
          Length = 68

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          NN   +RKE  L+Q+E+    G +++ IS +ETG+        ++L   LD
Sbjct: 9  NNLPQVRKEKGLSQQELAKLVGVSRNTISSIETGQYCPTAKLALVLCVALD 59


>gi|289671819|ref|ZP_06492709.1| peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M F +  +  R+ AKL Q E+  R G  Q+ IS+LE GKS
Sbjct: 1  MEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKS 40


>gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 340

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +  RK+ KLTQ ++  R   ++S IS  E G    +I  +I LA+ ++  +  L
Sbjct: 5  VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64

Query: 81 L 81
           
Sbjct: 65 F 65


>gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 310

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++M F  N +N+RK   L+Q+++  +   ++  +S+ E G S   +D ++IL       +
Sbjct: 2  DKMNFNTNLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNM 61

Query: 78 WKLLK 82
           +L+K
Sbjct: 62 DELVK 66


>gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 126

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R E  LTQK++    G A S I + E+G     I+ +  +A  LD P+ +LL
Sbjct: 9  IRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64


>gi|255655401|ref|ZP_05400810.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296451389|ref|ZP_06893127.1| MerR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296880261|ref|ZP_06904226.1| MerR family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259805|gb|EFH06662.1| MerR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296428704|gb|EFH14586.1| MerR family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 188

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RNIRK  K T  ++   T  + S+IS++E      ++ ++  +A  LDTPL+  +
Sbjct: 7  RNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMFM 61


>gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
          Length = 183

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          MIF N  +  R++  LTQ E+ N+   +   IS  ETGK+  +I+N+I+++  L+  L
Sbjct: 1  MIFHNLIKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISL 58


>gi|15896492|ref|NP_349841.1| LacI/xre family transcriptional regulator [Clostridium
          acetobutylicum ATCC 824]
 gi|15026320|gb|AAK81181.1|AE007820_7 Predicted transcriptional regulator, lacI/xre family [Clostridium
          acetobutylicum ATCC 824]
          Length = 243

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 9  PHLSDAILRERMIFVN----NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           HLS   ++  ++F+N      + IR++AKL+QK+   + G A+ +I+E+E G+  +
Sbjct: 10 CHLSK--IKGMVLFMNRAGEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVV 64


>gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 197

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 9  DSLVRKRI------RALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARA 62

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 63 LDTTLDQLVE 72


>gi|126700569|ref|YP_001089466.1| putative phage repressor [Clostridium difficile 630]
 gi|209901281|ref|YP_002290920.1| putative phage repressor [Clostridium phage phiCD27]
 gi|115252006|emb|CAJ69842.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|199612162|gb|ACH91335.1| putative phage repressor [Clostridium phage phiCD27]
          Length = 151

 Score = 35.8 bits (81), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLD 74
            N  +N R E  ++ +++ N+TG ++S +   ETG    I +D + ILAH LD
Sbjct: 12 ITNRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALD 65


>gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 181

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
 gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
          Length = 181

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|210622345|ref|ZP_03293114.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM
          13275]
 gi|210154333|gb|EEA85339.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM
          13275]
          Length = 68

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++ +I  NN +  R E KL+Q  +    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKDELILKNNLKQARAEKKLSQAALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|302521428|ref|ZP_07273770.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302430323|gb|EFL02139.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 275

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R+  + +Q+E+ +R+G +   +S +ETGK+    + ++ L+  LD PL
Sbjct: 14 LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPL 65


>gi|194289198|ref|YP_002005105.1| XRE family transcriptional regulator [Cupriavidus taiwanensis LMG
          19424]
 gi|193223033|emb|CAQ69038.1| putative transcriptional regulator, xenobiotic response element
          (XRE) family [Cupriavidus taiwanensis LMG 19424]
          Length = 149

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RK+   +Q+ +   +G ++S++S +E+GK  + + N+  LA TL  P  ++L
Sbjct: 16 LRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTAEML 68


>gi|254974937|ref|ZP_05271409.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092326|ref|ZP_05321804.1| MerR family transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100407|ref|ZP_05329384.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306352|ref|ZP_05350523.1| MerR family transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255314064|ref|ZP_05355647.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255516744|ref|ZP_05384420.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649843|ref|ZP_05396745.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683001|ref|YP_003214286.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686599|ref|YP_003217732.1| hypothetical protein CDR20291_1234 [Clostridium difficile R20291]
 gi|306519941|ref|ZP_07406288.1| hypothetical protein CdifQ_07697 [Clostridium difficile
          QCD-32g58]
 gi|260209164|emb|CBA62385.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212615|emb|CBE03634.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 188

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RNIRK  K T  ++   T  + S+IS++E      ++ ++  +A  LDTPL+  +
Sbjct: 7  RNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMFM 61


>gi|86738850|ref|YP_479250.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86565712|gb|ABD09521.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 111

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          F       R+ A LTQ+++  R+G ++  I+ +E G+  +    ++ LAH +
Sbjct: 10 FGERLAQTRRHASLTQRDVAERSGISRPTIANIEKGRQRLLYHQLLDLAHAI 61


>gi|282892584|ref|ZP_06300857.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281497708|gb|EFB40077.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 84

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 32/54 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R  R+   ++Q+E+  R+G  ++++  +E G+  ++I+N+ ILA  L+ 
Sbjct: 17 FGELVRQKRQALGISQEELAFRSGLHRTYVGSVERGERNLSIENVFILAKALEC 70


>gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC
          25827]
 gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC
          25827]
          Length = 76

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT +E+    G +Q  IS  E+G + INID +  L+     P+   L
Sbjct: 22 RKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPIQVFL 73


>gi|70729495|ref|YP_259233.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
          Pf-5]
 gi|68343794|gb|AAY91400.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
          Pf-5]
          Length = 242

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M F +  +  R+ A+L Q E+  R G  Q+ IS+LE GKS
Sbjct: 1  MEFKDRLKTARRHAQLNQTELAERAGLTQTSISDLERGKS 40


>gi|170740636|ref|YP_001769291.1| anaerobic benzoate catabolism transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168194910|gb|ACA16857.1| transcriptional regulator, XRE family with shikimate kinase
           activity [Methylobacterium sp. 4-46]
          Length = 328

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 27  RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R    +++K + + +G ++ +I++LETG   ++I  +  +AH +  PL  L+ P
Sbjct: 50  RTARAVRAMSRKALSHSSGLSERYIAQLETGHGNVSIILLRRVAHAIGVPLEDLIAP 106


>gi|229137167|ref|ZP_04265786.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
 gi|228646339|gb|EEL02554.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
          Length = 70

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+IRK  K+TQ+E+    GF+  S IS +E G+  +N D +  LA  L   + ++ 
Sbjct: 3  IRHIRKAKKITQEELAKNLGFSGSSAISYIENGQRKLNADKIPKLAECLGVTIEEIF 59


>gi|160940818|ref|ZP_02088160.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436338|gb|EDP14105.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC
          BAA-613]
          Length = 70

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + + +  R+E K+T +E+  ++G ++S IS +E G+    +  M +L+  L  P  KL 
Sbjct: 6  IFHIKEFREEKKITLRELSEKSGISKSEISFIENGQRDPTLHTMCLLSLALGVPPAKLF 64


>gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196]
 gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196]
          Length = 181

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 153

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 5   KRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +++ P   D ++++   I   N R +RK   LTQ+ +    G   S IS +E G+   ++
Sbjct: 35  EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 94

Query: 64  DNMIILAHTLDT 75
            +MI L   L+ 
Sbjct: 95  PDMIKLCRALEA 106


>gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205]
 gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205]
          Length = 183

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 13 DAILRERMIFVN-NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          DA+L+    +V  N R  R + +L+Q+E+  R G ++  I+ LETG   I++  +  +A+
Sbjct: 5  DAVLQ----YVGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIAN 60

Query: 72 TLDTPLWKLL 81
           LD    +L+
Sbjct: 61 ALDVNFKQLV 70


>gi|103487689|ref|YP_617250.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
          RB2256]
 gi|98977766|gb|ABF53917.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
          RB2256]
          Length = 73

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F N+ R +R  A ++TQ E+  R G  +  I+ +E GK + +++    +AH    PL  +
Sbjct: 6  FANDIRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGKPLEAV 65

Query: 81 LK 82
           +
Sbjct: 66 FQ 67


>gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301]
          Length = 223

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
          IRK+  +TQ+++  R G  ++ +S +ETGK+ ++  N  IL   L+  P W
Sbjct: 8  IRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDW 58


>gi|21221318|ref|NP_627097.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|7635975|emb|CAB88810.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 281

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          S +I + R       R IRK+A LT +E+ +R G+ +S  S +E G++  + D++
Sbjct: 4  SSSIQQARETLGKRLREIRKDAGLTARELASRAGWHESKCSRIENGRTPPSDDDL 58


>gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 106

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK  +LTQ E+  R G ++  +S  E G S  +++ ++ +   LDT    LL
Sbjct: 6  FGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYLL 65


>gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 236

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK  KLT +E+  +   ++S +S+ E G+  I+IDN+ ++A  LD  + KLL
Sbjct: 17 RKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68


>gi|120435300|ref|YP_860986.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
 gi|117577450|emb|CAL65919.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
          Length = 99

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +  RK A+LTQ+++  RTG  +S+IS +E G S I I
Sbjct: 42 LKEARKSAQLTQEQLAERTGTKKSYISRIERGLSDIQI 79


>gi|296133125|ref|YP_003640372.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296031703|gb|ADG82471.1| transcriptional regulator, XRE family [Thermincola potens JR]
          Length = 89

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R E  L+QK++ ++ G  QS IS LE+G+   +++ +  +AH L   L
Sbjct: 36 LRLEQGLSQKDLADKVGTKQSAISRLESGEYNPSVEFLTKIAHALGKEL 84


>gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 121

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 18 ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          ++ IF+    R+ RKE +LTQ+E+ +++G A   I ++E G+     + + +L   L
Sbjct: 4  DKFIFLGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKNPTYETLCLLVDRL 60


>gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium
          periodonticum ATCC 33693]
 gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium
          periodonticum ATCC 33693]
          Length = 184

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
 gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
          Length = 181

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 236

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK  KLT +E+  +   ++S +S+ E G+  I+IDN+ ++A  LD  + KLL
Sbjct: 17 RKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68


>gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
 gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
          Length = 184

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
 gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
          Length = 184

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 35/53 (66%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  L++
Sbjct: 11 RNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAYLIE 63


>gi|117924636|ref|YP_865253.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117925852|ref|YP_866469.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117926017|ref|YP_866634.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608392|gb|ABK43847.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
 gi|117609608|gb|ABK45063.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
 gi|117609773|gb|ABK45228.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
          Length = 104

 Score = 35.8 bits (81), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 6  RDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
          R +P  S+A   L +    +  F + RKEA LTQ+EI  R G  +S +S LE+
Sbjct: 20 RLKPGFSEAYDALEDEFQALRTFLSARKEAGLTQEEIAKRMGTTKSAVSRLES 72


>gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 322

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +   N+RK+   +Q+E   R G ++  IS+ E G+ST +++ ++ ++         
Sbjct: 1  MILADKITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDV 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. vincentii ATCC 49256]
 gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27]
 gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. vincentii ATCC 49256]
 gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27]
          Length = 184

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1]
          Length = 322

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF +    +RK++ ++Q+E+  + G ++  +S+ E  +ST +++ ++ ++   D     
Sbjct: 1  MIFADKLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|260591432|ref|ZP_05856890.1| conserved domain protein [Prevotella veroralis F0319]
 gi|260536624|gb|EEX19241.1| conserved domain protein [Prevotella veroralis F0319]
          Length = 78

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID--NMIILAHTLD 74
           + +RKE  LTQ+++  + G    +I E+E GK+T+ +D  N ++L   L 
Sbjct: 10 LKQLRKEYHLTQEDMAFKAGVGLRFIREMEQGKATLRMDKVNQVLLLFNLQ 60


>gi|256396427|ref|YP_003117991.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256362653|gb|ACU76150.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 77

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R +R EA LTQ ++    G  QS++S+ E+G   +++  +  +A  L T +
Sbjct: 9  EHLRLCAVLRELRHEADLTQVQVAAALGVPQSFVSKYESGDRRLDLIELHHVAKALGTTV 68

Query: 78 WKLLK 82
            +L+
Sbjct: 69 QTILE 73


>gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131]
 gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131]
          Length = 112

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R IRKE  ++  E+  +   +Q  +S  E G + I+ID +  L+  LD P  +++K
Sbjct: 27 RKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDCPFERVIK 82


>gi|257439609|ref|ZP_05615364.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
 gi|257197976|gb|EEU96260.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
          Length = 212

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           RKE+ LTQ+++  RTG AQ+ IS+LE G    ++  +  LA  +
Sbjct: 157 RKESGLTQQQLSERTGIAQTDISKLERGNGNPSLRTLQRLAAGM 200


>gi|210634337|ref|ZP_03298073.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM
          13279]
 gi|210158864|gb|EEA89835.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM
          13279]
          Length = 68

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E +   N+ R  RKE  L+Q ++   TG +++ IS +ETG+        ++L   LD 
Sbjct: 1  MKESLTLKNSLRAARKERGLSQAQLAEMTGVSRNTISSIETGQFNPTAKLALVLCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC
          25827]
 gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC
          25827]
          Length = 119

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          FR +RK+  LT K++  +   +Q  IS  E G   IN+D + ++ H L   L
Sbjct: 21 FR-LRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELGCSL 71


>gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
 gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
          Length = 105

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + IRK+ K+TQ E+   TGF Q+ IS  E GK +++  ++   A  L+  
Sbjct: 10 KEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVS 59


>gi|331650420|ref|ZP_08351492.1| Helix-turn-helix-containing protein [Escherichia coli M605]
 gi|331040814|gb|EGI12972.1| Helix-turn-helix-containing protein [Escherichia coli M605]
          Length = 265

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R +  +TQ+E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 4  NNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLGLAQAICNALDKPL 57


>gi|260557994|ref|ZP_05830206.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260408504|gb|EEX01810.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 250

 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R +R +A L QKE+  +TG  QS IS+ E     +  D +  +A  L++
Sbjct: 18 DRLRFLRTQAGLNQKELSKKTGVGQSSISDFENNVKIMAADKLAAIAKALNS 69


>gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family
          protein [Phascolarctobacterium sp. YIT 12067]
 gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family
          protein [Phascolarctobacterium sp. YIT 12067]
          Length = 104

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  AK++Q E+    G  Q+ +S +E G++ + I N+I L   L+ P+
Sbjct: 21 RISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKLHQILECPI 68


>gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine
          transporter [Staphylococcus pseudintermedius HKU10-03]
 gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine
          transporter [Staphylococcus pseudintermedius HKU10-03]
          Length = 179

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 32/49 (65%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +N+R+   LTQ+E+  RT  ++ +IS++E+ K++ N++  + +   L T
Sbjct: 8  KNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGT 56


>gi|225569760|ref|ZP_03778785.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM
          15053]
 gi|225161230|gb|EEG73849.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM
          15053]
          Length = 160

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 36/57 (63%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N ++ R++ + TQ+ +  +   ++  IS+ ETGK   ++DN+++L++  D  L +L+
Sbjct: 10 NLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDVSLDELM 66


>gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977]
 gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus]
          Length = 191

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R+E  L+  ++  R+G ++  +S++E G     ++ + +L   L  P  +L
Sbjct: 7  LVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQVPPQRL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|256545000|ref|ZP_05472368.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC
          51170]
 gi|256399296|gb|EEU12905.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC
          51170]
          Length = 68

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 36/66 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + ++++F N+ + +RKE   +Q+++ +  G +++ IS +ETG+        +IL   L+ 
Sbjct: 1  MDDKLVFKNHLKEVRKEKGYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEK 60

Query: 76 PLWKLL 81
              L 
Sbjct: 61 KFEDLF 66


>gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus
          pseudintermedius ED99]
          Length = 179

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 32/49 (65%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +N+R+   LTQ+E+  RT  ++ +IS++E+ K++ N++  + +   L T
Sbjct: 8  KNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGT 56


>gi|114800368|ref|YP_759512.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114740542|gb|ABI78667.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 72

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  N R +R++  ++Q+E+ +     ++++S LE    + ++D +  +A  LD    
Sbjct: 4  RDIFAQNIRRVRRQRGVSQEELASLANIDRTYVSALERSVYSASLDVVASIAKALDVEPH 63

Query: 79 KLL 81
          +LL
Sbjct: 64 ELL 66


>gi|115361280|ref|YP_778417.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115286608|gb|ABI92083.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
          Length = 94

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           EP   D I        +  R  R +   T+ E+ N TG +  +IS++E GK T  I  +
Sbjct: 2  SEPQSVDTI----GALAHLIRATRLQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKV 57

Query: 67 IILAHTLDTPLW 78
          ++L   L   L+
Sbjct: 58 MLLLGELGVRLY 69


>gi|296394527|ref|YP_003659411.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296181674|gb|ADG98580.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 112

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNI-----RKEAKLTQKEIRNRTGFAQSWISELET 56
          PR +   P L  A+  E     N          R+   + Q E     G  +S +S++E 
Sbjct: 6  PREEGAAPDLGYAVPMEHAALFNKHVGAEIALWRRVLDMGQDEFAAMVGIERSRLSKIEN 65

Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83
          GK    +D  + +A  +DT +  LL+P
Sbjct: 66 GKLAARMDEFLAVAALVDTNVVDLLQP 92


>gi|312194132|ref|YP_004014193.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311225468|gb|ADP78323.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 419

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          N R++R+ A L+Q+E+  RTG + S + ++E G S   ++ + +LA  L
Sbjct: 11 NLRDLRRTAGLSQEELAGRTGLSVSTVRKVEQGGSA-RVETLHVLARAL 58


>gi|241554132|ref|YP_002979345.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863438|gb|ACS61100.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 283

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S A+  E  I +  +R+ R +++L   ++   TG +Q  IS +E+G+ST    N++ LA 
Sbjct: 8  SSAVPNELGIQLRAWRDTRGKSQL---DLSLDTGISQRQISFIESGRSTPGRHNLLHLAD 64

Query: 72 TLDTPL 77
           LD PL
Sbjct: 65 ALDVPL 70


>gi|33601698|ref|NP_889258.1| putative transcriptional regulator [Bordetella bronchiseptica
          RB50]
 gi|33576135|emb|CAE33214.1| Putative transcriptional regulator [Bordetella bronchiseptica
          RB50]
          Length = 123

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          FR +RK+A+ TQ+E+   TG  Q  IS  E G ++
Sbjct: 42 FRTLRKQARKTQRELAAATGMRQEAISRFEAGSAS 76


>gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
          Length = 116

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F    +N+RK+A LTQ ++  + G +Q   +  E G      DN++ +A  L+  +
Sbjct: 1  MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSI 58


>gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC
          15912]
 gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC
          15912]
          Length = 295

 Score = 35.4 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    ++IRK+  ++Q+ +  + G ++  +++ ETG    +I+NMI +++  +  + +
Sbjct: 1  MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae]
          Length = 116

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F    +N+RK+A LTQ ++  + G +Q   +  E G      DN++ +A  L+  +
Sbjct: 1  MEFSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSI 58


>gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 197

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+   +T  ++   TG ++S +S LE+G+    ++ ++ LA T D PL  L+
Sbjct: 12 LRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDVPLDDLV 67


>gi|291327181|ref|ZP_06127260.2| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291311305|gb|EFE51758.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 118

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          IR+   L+  E+  + G +Q  IS  E   S ++  ++I L H LD PL   L
Sbjct: 39 IRRNKGLSGSELGKKIGVSQQQISRYERNVSRLDFGSLIYLLHHLDMPLSDFL 91


>gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 209

 Score = 35.4 bits (80), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 31/65 (47%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R R       R +R+E  LT  E+  R   A S +S++E G+ +   D ++ LA  L   
Sbjct: 15 RSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAEGLGAD 74

Query: 77 LWKLL 81
          + +L 
Sbjct: 75 VAELF 79


>gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45]
 gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45]
          Length = 212

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 16 LRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          LRE+ + V      R +RK  ++T  E+  +TG +   +S++E G  + +++ +  LA+ 
Sbjct: 19 LREKNLEVAIGRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANA 78

Query: 73 LDTPLWKLLK 82
          L  PL +L  
Sbjct: 79 LRVPLVQLFS 88


>gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
          25986]
 gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
          25986]
          Length = 208

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + IR ++ LTQ E+ ++ G     +   E+G+S   +D M  LA   DT +  
Sbjct: 3  MEFSTRLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVAD 62

Query: 80 LL 81
          L+
Sbjct: 63 LM 64


>gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 101

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   ++RK   LTQ ++    G  Q  IS++E+GK+ ++ + M    H +   L
Sbjct: 35 HELASLRKAQGLTQSQVAEAMGVTQGRISQIESGKTRLDTETMAAYLHAIGGEL 88


>gi|291460636|ref|ZP_06600026.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416827|gb|EFE90546.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 107

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + R+ + +TQKE+  RTG AQ+ IS+LE G +  +I  +  LA  +   L
Sbjct: 43 DARQRSGMTQKELAERTGIAQADISKLEHGNANPSIRTLQRLAKGMGMVL 92


>gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 120

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R+ RK   +TQKE+  R G  +S+IS LE G++ + + + I +A  L   L
Sbjct: 62  LRDRRKALGITQKELAERIGRDRSYISRLEKGETDLQLSSFIRIATALGIML 113


>gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA]
 gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA]
 gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 147

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          IRKE  LTQ+++  +    +  +S  E G++T  ID   ++A T D P+  LL+
Sbjct: 10 IRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVALLLE 63


>gi|153008007|ref|YP_001369222.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151559895|gb|ABS13393.1| putative transcriptional regulator, XRE family [Ochrobactrum
          anthropi ATCC 49188]
          Length = 87

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + IR+E +L+Q+E+  R    +++IS LE GK    I  + +LA  L      LL+
Sbjct: 23 NVQRIRRERRLSQEELSFRAAKTRAYISGLEAGKRNPTILTLAMLADALAVEPNDLLR 80


>gi|42522817|ref|NP_968197.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100]
 gi|39574013|emb|CAE79190.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100]
          Length = 103

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +K D     D I+ E + F    + IR   ++TQ E+  + G   + +S+LE G   
Sbjct: 1  MSTKKSDAIKFLDKIIGEPVSFGATLQAIRLSDEMTQAEMAKKLGITNAHLSQLERGHKF 60

Query: 61 INIDNMIILAHTLDTP 76
          ++ +  +  A  L  P
Sbjct: 61 VSPERALSFAKKLGYP 76


>gi|303326046|ref|ZP_07356489.1| putative helix-turn-helix protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863962|gb|EFL86893.1| putative helix-turn-helix protein [Desulfovibrio sp. 3_1_syn3]
          Length = 114

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +R+E  +++  +  R G   SW+   E G+S + ++ +I +A  L  P  +++
Sbjct: 17 LREERLMSRYALAKRAGVDCSWLRRFEQGRSGVRVETLIAIAQGLQMPAARIV 69


>gi|168207478|ref|ZP_02633483.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170661169|gb|EDT13852.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 93

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 25 NFRNIRK--EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N + IRK  + K+TQ+++   TG ++S++S++E  K   ++D  I L++ L   L +L
Sbjct: 6  NLQRIRKAKDPKITQQDLAKATGLSRSYLSDIEHNKYNPSLDTTIALSNALGVTLNEL 63


>gi|33597328|ref|NP_884971.1| putative transcriptional regulator [Bordetella parapertussis
          12822]
 gi|33573755|emb|CAE38057.1| Putative transcriptional regulator [Bordetella parapertussis]
          Length = 123

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          FR +RK+A+ TQ+E+   TG  Q  IS  E G ++
Sbjct: 42 FRTLRKQARKTQRELAAATGMRQEAISRFEAGSAS 76


>gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU144]
          Length = 175

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +N + IRKE K+TQ E+ +    +QS++S+LE  +  + I  +  +A  L+  +  L
Sbjct: 5  DNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAYL 61


>gi|296110945|ref|YP_003621326.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU
          11154]
 gi|295832476|gb|ADG40357.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU
          11154]
          Length = 91

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N +  R  + ++Q  + +    +Q  +S  ETGK   +IDN+I L++ L T + +L+ P
Sbjct: 28 NLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNLIKLSNILQTSVPELIAP 86


>gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 513

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P  ++ ILR     +   R+ RK   LTQ ++ +  G +QS ++ +E G   +++D +
Sbjct: 3  ETPARTEDILRRIGTLI---RDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDML 59

Query: 67 IILAHTLDTPLWKLLKP 83
            ++  LD+    L KP
Sbjct: 60 NRVSEALDSEFVTLGKP 76


>gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
          Length = 115

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +N RK   LTQ+++ +RTG ++  I   E  +   +++++ +LA   +T + +LL
Sbjct: 8  NIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSIDRLL 64


>gi|182682772|ref|YP_001830970.1| conjugal transfer protein TrbA [Xylella fastidiosa M23]
 gi|182632882|gb|ACB93657.1| transcriptional regulator, XRE family [Xylella fastidiosa M23]
          Length = 118

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +IF  N   +  E  +T+ E+  + G + S++S+L  GK+  ++  M  +A  L  PL  
Sbjct: 4  IIFFTNILRLLDERGMTKYELSEKAGISISFLSDLTNGKANPSLKIMEAIAEALKVPLTI 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLE 66


>gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles
          DSM 14600]
 gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles
          DSM 14600]
          Length = 141

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N   +RK   L+Q+E+  + G ++  +S+ ETG+S  +I+   +LA      +  
Sbjct: 1  MSFADNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    ++IR+   +TQ+++ + +G +  +I E+E G+   ++ ++  L+  LD P+ +L
Sbjct: 7  LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAEL 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119]
 gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119]
          Length = 200

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +NIRK   +TQ ++  +TGF+Q+ IS  E G+ +I
Sbjct: 14 KNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSI 48


>gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 68

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MI     R +RK   L+Q+E     G +QS+ISELE G  T
Sbjct: 1  MIPGRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKT 41


>gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena
          XCL-2]
 gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena
          XCL-2]
          Length = 198

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 34/55 (61%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N RK+  LT  +I  ++G ++  +S++E G+ + ++D+++ ++ TL  P+    +
Sbjct: 19 NARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKISRTLGVPISSFFR 73


>gi|119382887|ref|YP_913943.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119386082|ref|YP_917137.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119372654|gb|ABL68247.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
 gi|119376677|gb|ABL71441.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 78

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          LRER+    N R +R+E  L+Q+E+ +R    ++++  LE  ++   +D +  LA  L+ 
Sbjct: 10 LRERV--ARNLRRLRQEKSLSQEELADRADINRNYVGMLEREENAATVDMLEKLAAVLEV 67

Query: 76 PLWKLLK 82
             +LL+
Sbjct: 68 DPVELLR 74


>gi|330980471|gb|EGH78574.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 109

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M F +  +  R+ AKL Q E+  R G  Q+ IS+LE GKS
Sbjct: 1  MEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKS 40


>gi|257091659|ref|YP_003165302.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257048668|gb|ACV37855.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 123

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   +  E  +T+ E+  +   + S++S+L  GK+  ++  M  +A  L+TPL  L
Sbjct: 5  IFFTNILRLLDERGMTKNELAAKADISISFLSDLTNGKANPSLKIMEAIAEALETPLPTL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|160916217|ref|ZP_02078424.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991]
 gi|158431941|gb|EDP10230.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991]
          Length = 69

 Score = 35.4 bits (80), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          +++ +I  NN R++RK   L+Q E+   +G ++  IS +ETG+
Sbjct: 1  MKKELILKNNIRSVRKAKGLSQAELAAMSGVSRITISSIETGQ 43


>gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
 gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
          Length = 181

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC
          25827]
 gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC
          25827]
          Length = 132

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          IRK   +T K++  +   +Q  IS  E G   I++D +I L + LD P+
Sbjct: 40 IRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPI 88


>gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 205

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 11 DSLVRKRI------RALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARA 64

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 65 LDTSLDQLVE 74


>gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 189

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + +RK A L+Q  +   +G ++  I+ LE G S I++ ++  LA  L+     L+ 
Sbjct: 21 NLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEVGFVDLVS 78


>gi|312865324|ref|ZP_07725552.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311099435|gb|EFQ57651.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 101

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILA 70
          RKE  +TQK++   +G +Q  I+ +ETGK++  ID ++ +LA
Sbjct: 41 RKEKGITQKQLEEMSGVSQPVIARMETGKTSPQIDTVLKVLA 82


>gi|271967597|ref|YP_003341793.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270510772|gb|ACZ89050.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 407

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          R  RK A +TQ+E+  R G AQSW+S +E    +I +D++ ++
Sbjct: 16 RRARKRAGITQRELAQRVGRAQSWVSGVEN--DSIPLDSIALV 56


>gi|262404912|ref|ZP_06081465.1| putative transcriptional regulator [Vibrio sp. RC586]
 gi|262348878|gb|EEY98018.1| putative transcriptional regulator [Vibrio sp. RC586]
          Length = 107

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWIS----ELETGKSTINIDNMIILAHTLDTPL 77
           +  RK+AKL+QK +  R G  +S  S    + E GK T ++  + ++A  LD PL
Sbjct: 11 LKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVRTLKLIADELDVPL 66


>gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica
          ATCC 39073]
 gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica
          ATCC 39073]
          Length = 178

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 33/55 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R +R+E  ++ K++  +TG   S++S++E   +  +I ++  +A  LD P++  L
Sbjct: 7  RQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYFL 61


>gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M334]
 gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M334]
          Length = 110

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +   + +RKE KLTQK+I      +Q    + E+GK  +N++ M  LA   +     L
Sbjct: 1  MIIERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|307332017|ref|ZP_07611109.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306882357|gb|EFN13451.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 825

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLD 74
           R +R  A LTQ+E+  R+G + S I  LETGKS  + +  + +LA  LD
Sbjct: 8  LRPLRVRAGLTQEELSARSGVSVSTIRRLETGKSRDHRLSTLNLLADALD 57


>gi|160882147|ref|ZP_02063150.1| hypothetical protein BACOVA_00090 [Bacteroides ovatus ATCC 8483]
 gi|237720176|ref|ZP_04550657.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371110|ref|ZP_06617647.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CMC 3f]
 gi|299148042|ref|ZP_07041105.1| conserved domain protein [Bacteroides sp. 3_1_23]
 gi|156112447|gb|EDO14192.1| hypothetical protein BACOVA_00090 [Bacteroides ovatus ATCC 8483]
 gi|229450728|gb|EEO56519.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633768|gb|EFF52320.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CMC 3f]
 gi|298514225|gb|EFI38111.1| conserved domain protein [Bacteroides sp. 3_1_23]
          Length = 72

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + +RKE  LTQ E+  ++G    ++ ELE GK T+ +D +
Sbjct: 11 KQMRKEHNLTQVELSEKSGVGLRFVRELEQGKQTLRLDKV 50


>gi|298209023|ref|YP_003717202.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus
          HTCC2559]
 gi|83848950|gb|EAP86819.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus
          HTCC2559]
          Length = 491

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + IR +  L+   +   +G ++S+++E+E GK     D + IL+  LD P  
Sbjct: 7  KLIFGLKLKQIRTDKNLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSKKLDVPFD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|300313367|ref|YP_003777459.1| hypothetical protein Hsero_4081 [Herbaspirillum seropedicae SmR1]
 gi|300076152|gb|ADJ65551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 96

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          +F+   R  R+ A + Q E+    G  QS++S++ETG+  +++  +I     L
Sbjct: 12 LFLKQLREARESANVKQTELSEALGEYQSYVSKVETGERRLDVIELIAWCEAL 64


>gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii
          SS-2004]
 gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii
          SS-2004]
          Length = 100

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 29/48 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RKE  +T   +  + G +Q  +S  E G + INI+++++++  L TP+
Sbjct: 16 RKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPI 63


>gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 169

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  R    +  +S+ E G S  + D +I L+  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTLL 61


>gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC
          25827]
 gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC
          25827]
          Length = 186

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 31/53 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+++ L+  E+  + G A+S +S+LE G    +I+ +  +   LD P  +L++
Sbjct: 19 RQKSGLSLSELSRQAGIAKSTLSQLEAGNGNPSIETLWAICVALDVPFSRLIE 71


>gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC
          29149]
 gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC
          29149]
          Length = 120

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I VN    +RK+  LTQ  +    G +Q  IS+ E G   I  D ++ L+     P+ 
Sbjct: 5  RCILVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPID 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 YILR 68


>gi|118444284|ref|YP_879117.1| LacI/xre family transcriptional regulator [Clostridium novyi NT]
 gi|118134740|gb|ABK61784.1| Predicted transcriptional regulator, lacI/xre family [Clostridium
          novyi NT]
          Length = 221

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R+ R +A +T+K++  + G A+ +I E+E+GK  IN
Sbjct: 8  IRDARLKANMTEKQLAKKIGVAEKFIKEVESGKKVIN 44


>gi|120555195|ref|YP_959546.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120325044|gb|ABM19359.1| putative transcriptional regulator, XRE family [Marinobacter
          aquaeolei VT8]
          Length = 74

 Score = 35.4 bits (80), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F  N R IRK    +Q+ + +  G  +S++ ++E G+  I ++ + + A  L+ 
Sbjct: 9  FGRNLRAIRKSKGFSQERLAHDAGIDRSYVGKIERGEVNITLEKIYVFAELLEC 62


>gi|320094023|ref|ZP_08025848.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319979067|gb|EFW10585.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 111

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R+IR+    T +E+ +    +  ++SE+E G+   + + +  ++H L  PLW +L
Sbjct: 24 DVLRDIRQRQGRTLREVSSEAQVSLGYLSEVERGQKEASSELLDAISHALGVPLWFVL 81


>gi|224537055|ref|ZP_03677594.1| hypothetical protein BACCELL_01931 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521325|gb|EEF90430.1| hypothetical protein BACCELL_01931 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 72

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          M      + +RK+ +LTQ ++  ++G    +I ELE GK T+ +D
Sbjct: 4  MALAKYVKEMRKQHELTQVDLSEKSGVGLRFIRELEQGKQTLRLD 48


>gi|289826007|ref|ZP_06545166.1| hypothetical protein Salmonellentericaenterica_11630 [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 182

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD PL
Sbjct: 16 RQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPL 63


>gi|183220520|ref|YP_001838516.1| putative transcriptional regulator [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189910629|ref|YP_001962184.1| transcriptional regulator [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167775305|gb|ABZ93606.1| Transcriptional regulator [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167778942|gb|ABZ97240.1| Putative transcriptional regulator [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 207

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + IR     +  ++ NR G +++ +S++E GKS   I  +  +A+ L+ P  +LLK
Sbjct: 30 NLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSELLK 87


>gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 115

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +N+RK   LTQ+++  RTG ++  I   ET +   +++++ ILA   +T    LL
Sbjct: 8  NIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTDALL 64


>gi|86133032|ref|ZP_01051619.1| DNA binding helix-turn helix protein [Dokdonia donghaensis
          MED134]
 gi|85816429|gb|EAQ37620.1| DNA binding helix-turn helix protein [Dokdonia donghaensis
          MED134]
          Length = 490

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    R IR +  L+   +   TG ++S+++E+E GK     D +  L+  LD P  
Sbjct: 7  KLIFGLKLRQIRTDKNLSLFGLSKLTGLSKSYLNEIEHGKKYPKPDKIFTLSEKLDIPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 203

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 9  DSLVRKRI------RALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARA 62

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 63 LDTSLDQLVE 72


>gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 198

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D ++R R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  
Sbjct: 12 DGLVRRRI------RALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLVTLARA 65

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 66 LDTTLDQLVE 75


>gi|260893216|ref|YP_003239313.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260865357|gb|ACX52463.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 93

 Score = 35.4 bits (80), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R E  LTQ+E+  R G  QS I+ LE+G+++  +  +  +A  LD  L   L+P
Sbjct: 37 RLEKGLTQEELARRIGTRQSAIARLESGRTSPTLRMLKKVADALDADLEVRLRP 90


>gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor
          [Ketogulonicigenium vulgare Y25]
 gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor
          [Ketogulonicigenium vulgare Y25]
          Length = 214

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 34/56 (60%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          +R ++ +  R +RK+  LT +++ +R G +  ++S+LE  K+  ++ ++  LA  L
Sbjct: 25 DRPVYGSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVL 80


>gi|284028775|ref|YP_003378706.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283808068|gb|ADB29907.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 116

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++D ++ +     +  R  R   +LTQ+++  R G ++SW++ +E+G        ++ L 
Sbjct: 1  MADVVIPDWTKLGSTLRAARSRQRLTQEQVAERAGVSRSWLARVESGHRAAEFQQVLRLV 60

Query: 71 HTL 73
          + L
Sbjct: 61 NAL 63


>gi|323140941|ref|ZP_08075854.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322414679|gb|EFY05485.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 72

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    R+   +TQ E+  +   +++ +S++E GK   N++++ +LA  L     +LL+
Sbjct: 12 NIMYYRRALSMTQSELAEKAQMSRARVSDIECGKGPFNMESIFLLAQALGVDPVRLLQ 69


>gi|254422987|ref|ZP_05036705.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
 gi|196190476|gb|EDX85440.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
          Length = 584

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 29/44 (65%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           R++ K+TQ+ + +  G +QSWI ++E G+ +I+ ++ + L   L
Sbjct: 538 REQQKITQRALASSLGKSQSWIRDVEKGRFSISFEDQVRLREAL 581


>gi|169825863|ref|YP_001696021.1| MerR family transcriptional regulator [Lysinibacillus sphaericus
          C3-41]
 gi|168990351|gb|ACA37891.1| transcriptional regulator, MerR family [Lysinibacillus sphaericus
          C3-41]
          Length = 132

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNM 66
          H+SD +     +     R IR    L+Q+E+  RTG   F++  +S +E G+S I +  +
Sbjct: 3  HMSDFL----KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTL 58

Query: 67 IILAHTLDTP 76
            L   LD P
Sbjct: 59 ETLMKALDIP 68


>gi|149277242|ref|ZP_01883384.1| possible transcriptional regulator [Pedobacter sp. BAL39]
 gi|149232119|gb|EDM37496.1| possible transcriptional regulator [Pedobacter sp. BAL39]
          Length = 86

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + IRK   LTQ+ +  +   +Q+  S++E G S + ++ M  +A  L+  + +LL P
Sbjct: 15 NIKKIRKIKSLTQEFLAAKLDISQNAYSKIELGHSKLTVERMYQIADILNVDVIQLLSP 73


>gi|307947321|ref|ZP_07662655.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseibium sp. TrichSKD4]
 gi|307769463|gb|EFO28690.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseibium sp. TrichSKD4]
          Length = 115

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 32/71 (45%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          +P  S        +  +  R IR + K+TQ E+ +R G ++  I  +E GK T+ I    
Sbjct: 10 QPSYSRGTRHGLKLLGSEIRRIRSKRKMTQNELASRVGCSRDSIIAIEAGKPTVAIGAAF 69

Query: 68 ILAHTLDTPLW 78
            A  L   L+
Sbjct: 70 EAASVLGIELF 80


>gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 192

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+   +T  ++   TG ++S +S LE+G+    ++ ++ LA   D PL  L+
Sbjct: 16 LRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVPLDDLV 71


>gi|295705886|ref|YP_003598961.1| transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294803545|gb|ADF40611.1| transcriptional regulator [Bacillus megaterium DSM 319]
          Length = 213

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          KE  L+ +++ + TG   + IS +  GK   N+ ++   AH L+TPL  L+ P
Sbjct: 19 KENALSMRKLSSLTGIDTATISRIINGKQQANLHHLKQFAHYLNTPLEALIDP 71


>gi|149276668|ref|ZP_01882811.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39]
 gi|149232337|gb|EDM37713.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39]
          Length = 105

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N R IR+    TQ+ I  +   +Q+  S+LE G S I+ID +  +A  L+    +L
Sbjct: 21 IVADNIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAELLEVDAGEL 80

Query: 81 L 81
          +
Sbjct: 81 V 81


>gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 190

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R+E  +T   +   TG ++S +S LE+G+    ++ ++ LA   D PL  L+ 
Sbjct: 16 LRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLVG 72


>gi|317133712|ref|YP_004090316.1| helix-turn-helix domain protein [Ruminococcus albus 7]
 gi|315450870|gb|ADU24430.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 90

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + R  + LTQK++ +R+G AQ  IS+LE G +  +I  +  LA+ +   L
Sbjct: 36 DARNSSGLTQKQLSDRSGIAQGDISKLENGNANPSIRTLQRLANAMGKKL 85


>gi|89074996|ref|ZP_01161441.1| transcriptional regulator, putative [Photobacterium sp. SKA34]
 gi|90581632|ref|ZP_01237423.1| transcriptional regulator, putative [Vibrio angustum S14]
 gi|89049235|gb|EAR54799.1| transcriptional regulator, putative [Photobacterium sp. SKA34]
 gi|90437215|gb|EAS62415.1| transcriptional regulator, putative [Vibrio angustum S14]
          Length = 106

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWIS----ELETGKSTINIDNMIILAHTLDTPL 77
           + IRK AK++QKE+  R G  +S  S    + E GK T +I  +  +A  L  PL
Sbjct: 11 LKEIRKRAKISQKELGVRVGIDESSASARMNQYEKGKHTPDISTLKKIADELGVPL 66


>gi|228918784|ref|ZP_04082182.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228840856|gb|EEM86100.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 65

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N    +RKE  ++Q+ +    G ++++ISE+E  K   N+   I +A +L T +  +  
Sbjct: 1  MNKIAELRKEKLMSQETLAGLVGLSRTYISEIENNKKQPNVKLAIKIAESLGTNVESIFG 60

Query: 83 P 83
          P
Sbjct: 61 P 61


>gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus]
          Length = 77

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    + IR +  ++Q+E+ +  G  +++ISE+E G   I++ N+  +   LD P
Sbjct: 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIP 65


>gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3]
 gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI
 gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3
 gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3]
          Length = 223

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M   +  +  RK AKLTQ ++  R G  Q+ IS LE GKS
Sbjct: 1  MELKDRIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKS 40


>gi|312866305|ref|ZP_07726523.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311097999|gb|EFQ56225.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 68

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER+I  N  +  RKE KL+Q  +    G +++ IS +ETG+ +       ++   LD
Sbjct: 1  MEERLILKNRLKEARKEEKLSQGALAKLVGVSRNTISSIETGQYSPTAKLAPVICIALD 59


>gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 97

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          +A+  ER I ++  R  RKEA LTQ E+  +TG +Q+ IS LE G
Sbjct: 22 EALQPERDITMSLIR-ARKEAGLTQAELSEKTGISQADISRLENG 65


>gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3]
 gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3]
          Length = 228

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +N RK  K+TQKE+  R G   + IS  E G +    D +  +A  LD  +  L  P
Sbjct: 14 KNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQALDISINDLFPP 70


>gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens
          DSM 30120]
 gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens
          DSM 30120]
          Length = 189

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 31/53 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+++ ++  E+  + G A+S +S+LE G    +I+ +  L   LD P  +L++
Sbjct: 22 RQKSGMSLSELARKAGIAKSTLSQLEAGSGNPSIETLWALCVALDIPFSRLIE 74


>gi|17230454|ref|NP_487002.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17132056|dbj|BAB74661.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 102

 Score = 35.0 bits (79), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          L+QKE+  R G ++S++SE+E+GK    +D +   +   D P+  ++
Sbjct: 15 LSQKEMAERLGISKSYLSEIESGKKIPTLDLLNRYSGLFDIPVSSIM 61


>gi|289644282|ref|ZP_06476368.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289505894|gb|EFD26907.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 488

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 26/37 (70%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R+ R+   LTQ+++  R GF QS++S++E+G+  I+
Sbjct: 24 LRSYRQTFGLTQQQLAERLGFDQSYVSKVESGRRAIH 60


>gi|253681287|ref|ZP_04862085.1| transcriptional regulator [Clostridium botulinum D str. 1873]
 gi|253562525|gb|EES91976.1| transcriptional regulator [Clostridium botulinum D str. 1873]
          Length = 224

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RNI KE  L+  ++ + TG  +S IS +   K   NI+++  ++  LD PL +LLK
Sbjct: 15 RNILKERSLSLGKLSSMTGIDKSTISRIINHKQKANINHLQKISKALDIPLEELLK 70


>gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264]
 gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264]
          Length = 293

 Score = 35.0 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    ++ RK+AK++Q+++  + G ++  +++ ETG     I+N+  ++   +  + +
Sbjct: 1  MTFAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60]
 gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60]
          Length = 70

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RK   L+Q+++   TGF +++I  +E G+    + N+ I A+  D  L +L 
Sbjct: 9  FGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAFDLSLSELF 68


>gi|167744431|ref|ZP_02417205.1| transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167897070|ref|ZP_02484472.1| transcriptional regulator [Burkholderia pseudomallei 7894]
          Length = 93

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R +R +   +Q+ +    G  ++++S +E  +  +++ N+  +A  L+   W
Sbjct: 18 RGVLAFNVRLLRVQRGWSQERLALECGLDRTYVSAVERSRWNVSLSNIEAIAKALEVQPW 77

Query: 79 KLLKP 83
           LLKP
Sbjct: 78 ALLKP 82


>gi|302541253|ref|ZP_07293595.1| putative helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302458871|gb|EFL21964.1| putative helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 90

 Score = 35.0 bits (79), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +R E   +  E+ +R+G A+  + E+E G++   +     LAH LDTP  +L  
Sbjct: 20 LRAERGWSYDELASRSGLARRTVIEIEQGRTVGTLKTWHALAHALDTPFDELFA 73


>gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA]
          Length = 183

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          V +FRN   ++ ++ +E+  R+G   S +S++E      +I  +  +A  LD P++K  K
Sbjct: 10 VQDFRN---KSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMFKFFK 66


>gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187]
 gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus
          BDRD-ST26]
 gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus
          BDRD-ST26]
          Length = 152

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|149020301|ref|ZP_01835193.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP23-BS72]
 gi|147930603|gb|EDK81585.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP23-BS72]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N  + +R+E KL+QKEI    GF+      +E G+S I  +   +LA      +  LL
Sbjct: 1  MNRLKELRQEKKLSQKEIAETLGFSLRSFQRMENGESQIKPEKAQLLADYFGVSVANLL 59


>gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
 gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
          Length = 229

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 17  RERMIFVNNFRNIR---KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           RE+++ V   R +R   K+  +T  E+   TG +   +S++E G ++ ++  +  LAH L
Sbjct: 37  REKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLAHAL 96

Query: 74  DTPLWKLLK 82
             PL    +
Sbjct: 97  SVPLTSFFR 105


>gi|254250611|ref|ZP_04943930.1| hypothetical protein BCPG_05508 [Burkholderia cenocepacia PC184]
 gi|124879745|gb|EAY67101.1| hypothetical protein BCPG_05508 [Burkholderia cenocepacia PC184]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  R +   T+ E+ N TG +  +IS++E GK T  I  +++L   L   L+
Sbjct: 18 RAARIQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69


>gi|134291299|ref|YP_001115068.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134134488|gb|ABO58813.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
          G4]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R  R +   T+ E+ N TG +  +IS++E GK T  I  +++L   L   L+
Sbjct: 17 IRAARLQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69


>gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662]
 gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662]
          Length = 323

 Score = 35.0 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 39/65 (60%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  +F    +++R++AK++Q+++  +   ++  +++ ETG    +I+N+  +A   D  +
Sbjct: 19 EHKMFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISI 78

Query: 78 WKLLK 82
           +LL+
Sbjct: 79 DELLE 83


>gi|330982062|gb|EGH80165.1| conjugal transfer protein TrbA [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 159

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   I  E  +T+ ++   T  + S ISE+  GK    +  M  +A  L TPL  L
Sbjct: 5  IFFTNVLRILGERGMTKHDLAKLTHVSISVISEITNGKGNPTLKTMTAIAEALQTPLPTL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC
          13950]
          Length = 174

 Score = 35.0 bits (79), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +RK+  LT + +  +TG  +S++S++E  +ST +I   + +A  LD  + +L 
Sbjct: 5  LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLF 60


>gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
 gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 86

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +  R IR E  LTQ E+  R    Q+ IS+LE+G+    +  +  +   LD  L  + KP
Sbjct: 13 DAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLMALDMDLHIMPKP 72


>gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM
          13279]
 gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM
          13279]
          Length = 320

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 35/66 (53%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R+ M F +N   +R    +TQ+++    G  +  +S+ E+G ST ++D ++ L    +  
Sbjct: 6  RDTMSFRDNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFEVD 65

Query: 77 LWKLLK 82
          L  L++
Sbjct: 66 LDDLIR 71


>gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99]
 gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99]
          Length = 115

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +N+RK   LTQ+++  RTG ++  I   ET +   +++++ +LA   +T    LL
Sbjct: 8  NIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64


>gi|325510651|gb|ADZ22287.1| transcriptional regulator, lacI/xre family [Clostridium
          acetobutylicum EA 2018]
          Length = 222

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 25/35 (71%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          + IR++AKL+QK+   + G A+ +I+E+E G+  +
Sbjct: 9  KKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVV 43


>gi|298479659|ref|ZP_06997859.1| hypothetical protein HMPREF0106_00083 [Bacteroides sp. D22]
 gi|298274049|gb|EFI15610.1| hypothetical protein HMPREF0106_00083 [Bacteroides sp. D22]
          Length = 72

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +RKE  LTQ E+  ++G    ++ ELE GK T+ +D
Sbjct: 13 MRKEHNLTQVELSEKSGVGLRFVRELEQGKQTLRLD 48


>gi|85373672|ref|YP_457734.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594]
 gi|84786755|gb|ABC62937.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594]
          Length = 207

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           TQK++  R G  QS IS++E G   + I +++ +A  LD  L
Sbjct: 21 FTQKQLGERVGLPQSHISKIEGGNVDLQISSLVEIARALDLEL 63


>gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 281

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R EPH     L + + +  + R +      +Q ++    G +Q  IS +E+G+S    D 
Sbjct: 5  RREPHAPPHELGQLLRYWRDVRGV------SQLDLSLDAGISQRQISFIESGRSVPGRDT 58

Query: 66 MIILAHTLDTPL 77
          ++ LA TLD PL
Sbjct: 59 LLTLAQTLDVPL 70


>gi|238026838|ref|YP_002911069.1| putative helix-turn-helix transcriptional regulator [Burkholderia
           glumae BGR1]
 gi|237876032|gb|ACR28365.1| Putative helix-turn-helix transcriptional regulator [Burkholderia
           glumae BGR1]
          Length = 128

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 40/81 (49%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           + + D   +  A+L   +   +  R  R   +LTQ  +    G ++ ++S++ET +    
Sbjct: 43  KAQDDGERIPAAVLDAELAGDHPVRAWRNHRRLTQDALATAAGISKPYLSQIETRQRVGT 102

Query: 63  IDNMIILAHTLDTPLWKLLKP 83
            D ++ +AH L+  +  L++P
Sbjct: 103 TDALVKIAHALNVSIAVLIEP 123


>gi|187932677|ref|YP_001886786.1| hypothetical protein CLL_A2598 [Clostridium botulinum B str.
          Eklund 17B]
 gi|187720830|gb|ACD22051.1| conserved domain protein [Clostridium botulinum B str. Eklund
          17B]
          Length = 66

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  R+  +LTQ+++  + G  +  I  LE GK   ++   + ++  ++TP+ KL 
Sbjct: 4  FICNLKKYRQMKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAVDISRVVETPIEKLF 63


>gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 198

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R +R+E  +T   +   TG ++S +S LE+G+    ++ ++ LA   D PL
Sbjct: 24 LRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPL 75


>gi|256376556|ref|YP_003100216.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255920859|gb|ACU36370.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 276

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 28/42 (66%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            R IRK + L+ KE+ +R G++++ +S +ETGK  ++ + +
Sbjct: 14 QLRVIRKRSGLSMKEVADRMGWSEAKVSRMETGKRPVDSEEV 55


>gi|257453157|ref|ZP_05618456.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|317059692|ref|ZP_07924177.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|313685368|gb|EFS22203.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
          Length = 185

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  RNIR    L  KE+  +   + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 9  NIIRNIRLSKGLLIKEVAMKCDISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 66


>gi|13541016|ref|NP_110704.1| transcription regulator [Thermoplasma volcanium GSS1]
          Length = 194

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          E M  ++  R +RK   ++QK++   TG +QS+I+ LE G  TIN
Sbjct: 2  EMMPNIDELRKMRKNLGISQKDLARVTGVSQSYIARLEKG--TIN 44


>gi|313677734|ref|YP_004055730.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312944432|gb|ADR23622.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 494

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++IF    R +R E  L+  ++  +TG + S+++E+E GK    I+ +  L+ TL+ 
Sbjct: 9  KLIFGLKVRQLRLEKGLSFAQLSKQTGLSASYLNEIEKGKKYPKIEKINKLSETLEV 65


>gi|296447228|ref|ZP_06889158.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gi|296255287|gb|EFH02384.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 96

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          L E    VN+    R  +KL+Q E+  R G  +S +S LE+G+ 
Sbjct: 28 LEEEFALVNSMIEARARSKLSQAEVAKRMGTTESAVSRLESGRG 71


>gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7]
 gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7]
          Length = 181

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 28/40 (70%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          R++RKE  LT K++ N TG + S++S++E   S++ I ++
Sbjct: 10 RDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSL 49


>gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135]
 gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135]
          Length = 120

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 15  ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           ILRER          RKE  +TQKE+  R G  +++I+ +E G++ + + + I +A  L 
Sbjct: 61  ILRER----------RKELGMTQKELAERVGRERTYINRIERGETDLQLSSFIRIAEALG 110

Query: 75  TPL 77
             L
Sbjct: 111 IML 113


>gi|126699926|ref|YP_001088823.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254975889|ref|ZP_05272361.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255093277|ref|ZP_05322755.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255315019|ref|ZP_05356602.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517694|ref|ZP_05385370.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650804|ref|ZP_05397706.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|255656283|ref|ZP_05401692.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|260683886|ref|YP_003215171.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260687546|ref|YP_003218680.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296450276|ref|ZP_06892037.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296878691|ref|ZP_06902696.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|306520704|ref|ZP_07407051.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|115251363|emb|CAJ69195.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|260210049|emb|CBA64125.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260213563|emb|CBE05326.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296261039|gb|EFH07873.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296430498|gb|EFH16340.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 66

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  R+  +LTQ+++  + G  +  I  LE GK   ++   I ++  +DTP+ +L 
Sbjct: 4  FICNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63


>gi|14324400|dbj|BAB59328.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 196

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          E M  ++  R +RK   ++QK++   TG +QS+I+ LE G  TIN
Sbjct: 4  EMMPNIDELRKMRKNLGISQKDLARVTGVSQSYIARLEKG--TIN 46


>gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 112

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++     R  R    LTQ+++   TG   S+I ++E G+ + +++ +I ++ +LDT +  
Sbjct: 11 VLLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISY 70

Query: 80 LL 81
          +L
Sbjct: 71 IL 72


>gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862]
          Length = 137

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++F     N+RK+  L+Q+++ ++    +  +S+ ETG+S+ +++ M  +A  LD  +  
Sbjct: 3  IVFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSVQV 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|295096644|emb|CBK85734.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 75

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N  +  RKE  +TQ ++    G  QS+I+++E+G+  +++   + LA  +D  +  +L
Sbjct: 13 INALKKARKEKGITQAQLAEALGKPQSFIAKVESGERRLDVVEFVHLARLVDVNISLIL 71


>gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 126

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R E  L+Q+E+  R   +   I   E+GK+ +N++N+ ++A  L  P+    +
Sbjct: 20 RHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVPVGYFFQ 72


>gi|2340851|emb|CAA74068.1| hypothetical protein [Ralstonia eutropha H16]
          Length = 105

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F  +   +RK+   +Q+ +   +G ++S++S +E+GK  + + N+  LA TL  P
Sbjct: 8  LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVP 63


>gi|327439446|dbj|BAK15811.1| predicted transcriptional regulator [Solibacillus silvestris
          StLB046]
          Length = 78

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N   IRKE KL+Q ++        +     ETGKS  N D M ++++  D P+  +  P
Sbjct: 4  NLLRIRKENKLSQAKMAEILKIDYTTYHNKETGKSKFNADEMFLISNLFDLPIEDIFLP 62


>gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii L2-6]
          Length = 101

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +RKE  LTQ+++  + G A + I+ +ETG   I+ID  I L    +T L
Sbjct: 43 KALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTL 93


>gi|257066745|ref|YP_003153001.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256798625|gb|ACV29280.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 491

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N RKE  +TQK + + TG  ++ IS LE+   T +ID +  +   LD
Sbjct: 15 NKRKEKGITQKSLADTTGINRAMISRLESCDYTPSIDQLQAIGEVLD 61


>gi|328957520|ref|YP_004374906.1| putative transcriptional regulator (Xre family); skin element
          [Carnobacterium sp. 17-4]
 gi|328673844|gb|AEB29890.1| putative transcriptional regulator (Xre family); skin element
          [Carnobacterium sp. 17-4]
          Length = 166

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RKE KLTQ+++  +   +Q  +S  ETGK+  +I ++I LA   D  L
Sbjct: 11 RKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSL 58


>gi|253581505|ref|ZP_04858730.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251836575|gb|EES65110.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 84

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +NIR E K TQKE     G  Q  +S  E  +S IN+  +I +   LD    K++K 
Sbjct: 20 KNIRVE-KYTQKEFSKELGVTQKTVSHYENCRSEINLKLLIKICKILDINFIKMMKK 75


>gi|170700652|ref|ZP_02891649.1| helix-turn-helix domain protein [Burkholderia ambifaria IOP40-10]
 gi|171320500|ref|ZP_02909529.1| helix-turn-helix domain protein [Burkholderia ambifaria MEX-5]
 gi|172065528|ref|YP_001816240.1| helix-turn-helix domain-containing protein [Burkholderia
          ambifaria MC40-6]
 gi|170134424|gb|EDT02755.1| helix-turn-helix domain protein [Burkholderia ambifaria IOP40-10]
 gi|171094263|gb|EDT39341.1| helix-turn-helix domain protein [Burkholderia ambifaria MEX-5]
 gi|171997770|gb|ACB68687.1| helix-turn-helix domain protein [Burkholderia ambifaria MC40-6]
          Length = 94

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R  R +   T+ E+ N TG +  +IS++E GK T  I  +++L   L   L+
Sbjct: 17 IRATRLQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69


>gi|65319713|ref|ZP_00392672.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
          Length = 106

 Score = 35.0 bits (79), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium
          IMCC3088]
 gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium
          IMCC3088]
          Length = 222

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R +RKE   T  ++  RTG +   +S+LE GK+ +N  ++  LA  L   +  L  P
Sbjct: 28 LRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTDLNFSSVNKLATGLGLAVTDLTNP 85


>gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana
          DSM 4359]
 gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana
          DSM 4359]
          Length = 188

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L
Sbjct: 17 EKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDL 70


>gi|268593678|ref|YP_003297620.1| putative transcriptional repressor protein [Edwardsiella tarda
          EIB202]
 gi|267986581|gb|ACY86409.1| putative transcriptional repressor protein [Edwardsiella tarda
          EIB202]
          Length = 103

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +TQKE+ + TG+ +  ++EL  GK+ + ID  +IL     T
Sbjct: 24 ITQKELASHTGWTRKHVNELCKGKARVTIDTALILGKAFGT 64


>gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991]
 gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991]
          Length = 110

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          +I+R+ ++F    + +RK+  L+Q  +    G     IS  E GKS  N+  +  L   L
Sbjct: 5  SIIRKIIMFNEKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEAL 64

Query: 74 DTPL 77
          D PL
Sbjct: 65 DVPL 68


>gi|113867108|ref|YP_725597.1| hypothetical protein H16_A1088 [Ralstonia eutropha H16]
 gi|113525884|emb|CAJ92229.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 146

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RK+   +Q+ +   +G ++S++S +E+GK  + + N+  LA TL  P  ++L
Sbjct: 16 LRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEML 68


>gi|325970185|ref|YP_004246376.1| transcriptional regulator, y4mF family [Spirochaeta sp. Buddy]
 gi|324025423|gb|ADY12182.1| transcriptional regulator, y4mF family [Spirochaeta sp. Buddy]
          Length = 70

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK  KLTQ+E   R+G    ++ ELE GK T+ +D +
Sbjct: 12 RKRNKLTQEEFALRSGLGLRFVRELEQGKPTVRLDKV 48


>gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 101

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +RKE  LTQ+++  + G A + I+ +ETG   I+ID  I L    +T L
Sbjct: 43 KALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTL 93


>gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
 gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
          Length = 210

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +RKEA LT  ++  R+G A S +S++E  + +   D ++ LA  L   +  L+
Sbjct: 28 LRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTILSLAEGLGVDITHLV 83


>gi|213962877|ref|ZP_03391137.1| conserved domain protein [Capnocytophaga sputigena Capno]
 gi|213954534|gb|EEB65856.1| conserved domain protein [Capnocytophaga sputigena Capno]
          Length = 68

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK+ +LTQ E+  R G    ++ ELE GK T+ +D +
Sbjct: 13 RKQLRLTQPELAMRAGVGLRFVRELEQGKKTLRLDKV 49


>gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae
          ATCC 13813]
          Length = 153

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N +  RK+ KLTQKE+  +   A + IS  E G++   +DN+  +A     P  KLL
Sbjct: 20 DNIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIEQMASIFGIPKSKLL 77


>gi|19552456|ref|NP_600458.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62390122|ref|YP_225524.1| Cro/CI family transcriptional regulator [Corynebacterium
          glutamicum ATCC 13032]
 gi|21324002|dbj|BAB98628.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41325458|emb|CAF19938.1| TRANSCRIPTIONAL REGULATOR, CRO/CI FAMILY [Corynebacterium
          glutamicum ATCC 13032]
          Length = 75

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N RKE  L Q E+ +  G ++ +I ++E GK+T+ +D +I +   L   L
Sbjct: 14 NGRKELGLRQGELADLAGVSERFIRDVEKGKTTVRLDKVIDVLRVLGLEL 63


>gi|301164396|emb|CBW23954.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 101

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          + RK A+LTQ+E+ NR G  +S+IS++E G  T  +  +  +A  +
Sbjct: 47 DARKNARLTQEELANRIGADKSYISKIERGLITPTVSTLYRIAAAM 92


>gi|254502300|ref|ZP_05114451.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222438371|gb|EEE45050.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 100

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + R +RK   LT  E+  R G +  W+S++E G S ++ +++  +A   D P
Sbjct: 7  DLRALRKTKGLTLTELAERLGKSVGWLSQIERGISKLSSEDIDRMAGVFDVP 58


>gi|213161102|ref|ZP_03346812.1| hypothetical protein Salmoneentericaenterica_14098 [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428345|ref|ZP_03361095.1| hypothetical protein SentesTyphi_24034 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
          Length = 265

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R +  +TQ E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 4  NNIKQLRTQLSITQHELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57


>gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108]
 gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108]
          Length = 115

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +N+RK   LTQ+++  RTG ++  I   ET +   +++++ +LA   +T    LL
Sbjct: 8  NIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64


>gi|52143068|ref|YP_083761.1| MerR family transcriptional regulator [Bacillus cereus E33L]
 gi|206973592|ref|ZP_03234510.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|222095997|ref|YP_002530054.1| transcriptional regulator, merr family [Bacillus cereus Q1]
 gi|51976537|gb|AAU18087.1| possible transcriptional regulator, MerR family [Bacillus cereus
          E33L]
 gi|206747748|gb|EDZ59137.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|221240055|gb|ACM12765.1| possible transcriptional regulator, MerR family [Bacillus cereus
          Q1]
 gi|324326426|gb|ADY21686.1| putative transcriptional regulator, MerR family protein [Bacillus
          thuringiensis serovar finitimus YBT-020]
          Length = 186

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|225378330|ref|ZP_03755551.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM
           16841]
 gi|225209767|gb|EEG92121.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM
           16841]
          Length = 147

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +   ++    R+ A LTQK++  +TG  QS IS+LE G +  +I  +  LA  +D  L
Sbjct: 82  LALASSLARAREYAMLTQKQLSEKTGIYQSDISKLERGNANPSILTLKRLADAMDMTL 139


>gi|160941439|ref|ZP_02088775.1| hypothetical protein CLOBOL_06331 [Clostridium bolteae ATCC
          BAA-613]
 gi|158435649|gb|EDP13416.1| hypothetical protein CLOBOL_06331 [Clostridium bolteae ATCC
          BAA-613]
          Length = 67

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +NIRKE  L QK+I +     QS+IS++E GK+ 
Sbjct: 11 KNIRKEKGLRQKDIAHAMTVEQSYISQVENGKTV 44


>gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185]
 gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185]
          Length = 263

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLWKL 80
          +  R+ RKE KLTQK +        S I++ E G ST    N+I L+  L+ +P W L
Sbjct: 29 DRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEWLL 86


>gi|30262414|ref|NP_844791.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527707|ref|YP_019056.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185259|ref|YP_028511.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|118477813|ref|YP_894964.1| MerR family transcriptional regulator [Bacillus thuringiensis
          str. Al Hakam]
 gi|165870483|ref|ZP_02215137.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167633086|ref|ZP_02391412.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167639621|ref|ZP_02397891.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170687038|ref|ZP_02878257.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170706715|ref|ZP_02897174.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177649613|ref|ZP_02932615.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190565573|ref|ZP_03018493.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196033861|ref|ZP_03101272.1| DNA-binding protein [Bacillus cereus W]
 gi|196043683|ref|ZP_03110921.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|218903548|ref|YP_002451382.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225864377|ref|YP_002749755.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227814774|ref|YP_002814783.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228927463|ref|ZP_04090518.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933732|ref|ZP_04096579.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228946017|ref|ZP_04108357.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228985502|ref|ZP_04145659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229091390|ref|ZP_04222604.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42]
 gi|229121957|ref|ZP_04251175.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
 gi|229155991|ref|ZP_04284092.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342]
 gi|229184624|ref|ZP_04311825.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|229196624|ref|ZP_04323368.1| Transcriptional regulator, XRE [Bacillus cereus m1293]
 gi|229604374|ref|YP_002866746.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254684990|ref|ZP_05148850.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722396|ref|ZP_05184184.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254737437|ref|ZP_05195141.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743378|ref|ZP_05201063.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751753|ref|ZP_05203790.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254760271|ref|ZP_05212295.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30257045|gb|AAP26277.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502855|gb|AAT31531.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179186|gb|AAT54562.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|118417038|gb|ABK85457.1| transcriptional regulator, MerR family [Bacillus thuringiensis
          str. Al Hakam]
 gi|164713638|gb|EDR19161.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167512330|gb|EDR87706.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167531898|gb|EDR94563.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170128446|gb|EDS97314.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669089|gb|EDT19833.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084687|gb|EDT69745.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190563600|gb|EDV17565.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195993541|gb|EDX57498.1| DNA-binding protein [Bacillus cereus W]
 gi|196025992|gb|EDX64661.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|218536010|gb|ACK88408.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225787172|gb|ACO27389.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227004110|gb|ACP13853.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228586980|gb|EEK45054.1| Transcriptional regulator, XRE [Bacillus cereus m1293]
 gi|228598837|gb|EEK56456.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|228627598|gb|EEK84324.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342]
 gi|228661485|gb|EEL17107.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
 gi|228691932|gb|EEL45675.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42]
 gi|228774267|gb|EEM22676.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228813663|gb|EEM59944.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228825965|gb|EEM71751.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832182|gb|EEM77764.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229268782|gb|ACQ50419.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 186

 Score = 35.0 bits (79), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 186

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110]
          Length = 210

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R +R+ A L+ +++ N+TG +   IS+LE  ++  +I  + +L+  LD P+
Sbjct: 31 RLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIRTLRLLSIALDVPI 81


>gi|295840749|ref|ZP_06827681.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197696319|gb|EDY43252.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 75

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          EP   DA  R+     +  R+ R    L+Q+++  RTG +   +  +E+G     +  + 
Sbjct: 4  EPDALDAFRRQ---LADRIRDHRLWRNLSQEQVAERTGLSAHTVQRIESGTRETKVSYLF 60

Query: 68 ILAHTLDTPLWKLL 81
           L H LD  +  LL
Sbjct: 61 RLTHALDCEVRDLL 74


>gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 101

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +RKE  LTQ+++  + G A + I+ +ETG   I+ID  I L    +T L
Sbjct: 43 KALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTL 93


>gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 245

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N  R  RKE  LTQ+++ ++    +  +S  E   S  N+D ++ L+  L  PL  
Sbjct: 1  MQFANVLRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDI 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 206

 Score = 34.7 bits (78), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 30/46 (65%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          RKE  LT KE+  R+G + ++IS++E GK+  +I +++ ++  L  
Sbjct: 32 RKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALGV 77


>gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020]
          Length = 233

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          A + + M   +  +  RK A+LTQ E+  R+G  Q+ +SE+E G
Sbjct: 15 AFIFQPMELKDRLKQARKHARLTQAELAERSGIKQASVSEIERG 58


>gi|325662696|ref|ZP_08151293.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086435|ref|ZP_08335515.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325471035|gb|EGC74262.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330406201|gb|EGG85724.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 68

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          +I  NN +N R E KL+Q E+    G +++ IS +ETG+
Sbjct: 5  LILKNNLKNARAERKLSQMELAELVGVSRNTISSIETGQ 43


>gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 225

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R++R+ + LT +   +R G + + +S LETG+   ++  ++ LA T  T +  LL 
Sbjct: 35 LRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLTLARTYGTTVSDLLG 91


>gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 179

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + RN+R+ A L+Q+++  R    ++++S++E  K+T  + ++  LA  L   L  LL
Sbjct: 67  IAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLSSLERLAKALQVTLPDLL 126


>gi|298244352|ref|ZP_06968158.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
 gi|297551833|gb|EFH85698.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
          Length = 442

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            ++ R    LTQ+++    GF QS+IS+LE G+   +I  +  +AH L  P
Sbjct: 83  LKHYRSIHHLTQRDLATILGFDQSYISKLENGQGLRDIAVLSRIAHCLAIP 133


>gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis
          XB6B4]
          Length = 393

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R +  L Q E   + G +   +S+ E G+S  +I+N+ +++  LD  +  
Sbjct: 16 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 75

Query: 80 LL 81
          L+
Sbjct: 76 LI 77


>gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia
          intestinalis L1-82]
 gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia
          intestinalis L1-82]
          Length = 403

 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R +  L Q E   + G +   +S+ E G+S  +I+N+ +++  LD  +  
Sbjct: 26 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 85

Query: 80 LL 81
          L+
Sbjct: 86 LI 87


>gi|257061063|ref|YP_003138951.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256591229|gb|ACV02116.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 173

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          R+      + +RK+  LTQ+++  + G  QSW+S+LE+ 
Sbjct: 35 RISLTQAMKQLRKKVGLTQQQLAEKLGVTQSWVSKLESA 73


>gi|168185803|ref|ZP_02620438.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296146|gb|EDS78279.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
          Length = 221

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 25/37 (67%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R+ R +A +T+K++  + G A+ +I E+E+GK  IN
Sbjct: 8  IRDARLKANVTEKQLARKIGVAEKFIKEVESGKKVIN 44


>gi|107022803|ref|YP_621130.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116686957|ref|YP_840204.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|105892992|gb|ABF76157.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          AU 1054]
 gi|116652672|gb|ABK13311.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 94

 Score = 34.7 bits (78), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  R +   T+ E+ N TG +  +IS++E GK T  I  +++L   L   L+
Sbjct: 18 RAARIQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLGELGVRLY 69


>gi|182433810|ref|YP_001821529.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|182440913|ref|YP_001828632.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178462326|dbj|BAG16846.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178469429|dbj|BAG23949.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 87

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R E   T  E+ +RTG A+  + E+E G++  ++     +AH LD P+
Sbjct: 20 LRSEHGWTYDELAHRTGLARRTLIEIEQGRTIGSLKTWHAIAHALDVPV 68


>gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 345

 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE+  TQ+E+ NR G     +++ ETG S  +I+ +  +A  L   L  LL
Sbjct: 5  NVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDTLL 62


>gi|320530460|ref|ZP_08031518.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas artemidis F0399]
 gi|320137293|gb|EFW29217.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas artemidis F0399]
          Length = 93

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          + R  A LTQKE+  ++G AQS IS+LE G +  ++  +  LA  +
Sbjct: 36 DARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLAAGM 81


>gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 169

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  +    +  +S+ E G S  + D +I L+  L+TP+  LL
Sbjct: 5  NIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTLL 61


>gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 183

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          M    N R IRKE  LT K++ +  G ++++I   ETG+    + ++  LA  L
Sbjct: 1  MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKAL 54


>gi|290791048|gb|ADD63273.1| TrbA mating pair formation protein, transcription regulator
          [uncultured bacterium pAKD4]
          Length = 125

 Score = 34.7 bits (78), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   + +E  +T+ ++  + G + S++S+L  GK+  ++  M  +A  L  PL  L
Sbjct: 5  IFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPTL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12]
 gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12]
 gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12]
          Length = 184

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 31/55 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +NIR    L  KE+ ++   + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 12 KNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFKFF 66


>gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
 gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
          Length = 181

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK   L+ KE+ N      S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 14 RKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176]
 gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176]
          Length = 269

 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N + IRK   L+Q+E+  +    +  IS+ E G S  + + +I ++  L+TP+  LL
Sbjct: 105 NLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVSILL 161


>gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC
          27759]
 gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC
          27759]
          Length = 112

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           + IRK  KLTQ+++  + G +  ++ E+E G+ T+++  +  +A  L T
Sbjct: 10 IKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGT 59


>gi|330836178|ref|YP_004410819.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides
          DSM 17374]
 gi|329748081|gb|AEC01437.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374]
          Length = 99

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          IRK   LTQ E+  + G +Q+ IS++E GK  I I  +  LA+ +
Sbjct: 44 IRKAQNLTQAELAEKVGLSQTDISKIEKGKKRITISRLQELANGM 88


>gi|197295277|ref|YP_002153818.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|195944756|emb|CAR57361.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 94

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  R +   T+ E+ N TG +  +IS++E GK T  I  +++L   L   L+
Sbjct: 18 RAARIQQGFTRDELANATGLSPKFISQVEAGKPTAQIGKVMLLLSELGVRLY 69


>gi|108803015|ref|YP_642952.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108764258|gb|ABG03140.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 77

 Score = 34.7 bits (78), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + R++R  A ++Q+E+  R+G A+  IS+LETGK       +  LA  L+ 
Sbjct: 5  HLRDLRLRAVMSQEELARRSGVARDTISKLETGKRRAYPSTVRKLAEGLEV 55


>gi|293364818|ref|ZP_06611535.1| XRE family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|291316268|gb|EFE56704.1| XRE family transcriptional regulator [Streptococcus oralis ATCC
          35037]
          Length = 115

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           R IRKE  L+Q+ +  + G    +IS LET  S I ID +
Sbjct: 14 IRIIRKEKNLSQQNLSEKAGVGIDYISNLETKGSNIKIDTL 54


>gi|91217908|ref|ZP_01254861.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC
          700755]
 gi|91183885|gb|EAS70275.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC
          700755]
          Length = 492

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++IF    + IR E KL+   +   +G ++S+++E+E GK     D +  L+  L+ P
Sbjct: 7  KLIFGLKLKQIRTEKKLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIATLSEKLEVP 64


>gi|301053933|ref|YP_003792144.1| putative MerR family transcriptional regulator [Bacillus
          anthracis CI]
 gi|300376102|gb|ADK05006.1| possible transcriptional regulator, MerR family [Bacillus cereus
          biovar anthracis str. CI]
          Length = 186

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 14 RKKNKMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65


>gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 135

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S AI R +    +   + RKE  L+QK++    GF Q ++S +E G+  ++++ ++ ++ 
Sbjct: 25 SLAIGRIKGQVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEENLSLETLVKISA 84

Query: 72 TL 73
           L
Sbjct: 85 CL 86


>gi|300814289|ref|ZP_07094561.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300511556|gb|EFK38784.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 67

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          NN   IRK+  +TQK+I N  G    +IS+LE G S  ++     +A  L+  + +L
Sbjct: 4  NNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEIARFLECGVEEL 60


>gi|258406011|ref|YP_003198753.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798238|gb|ACV69175.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 117

 Score = 34.7 bits (78), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R  R +  LTQ E+  +TG  QS IS +E GK  I  +    LA  L+
Sbjct: 62  LRGARNKEGLTQVELAEKTGIPQSHISSMENGKKEIGKERAKRLAEVLN 110


>gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 130

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F    + +R E  L+QKEI N  G  ++  ++ ETGKS  + D +  LA      +  
Sbjct: 1  MLFNEIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens
          str. 13]
 gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium
          perfringens str. 13]
          Length = 367

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  RK+ KLTQ+++  + G A+S +S  E G    NI  +I L+  ++  +  L+
Sbjct: 9  FSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLI 68


>gi|313896884|ref|ZP_07830431.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312974331|gb|EFR39799.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 96

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + R  A LTQKE+  ++G AQS IS+LE G +  ++  +  LA
Sbjct: 39 DARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLA 81


>gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
 gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
          Length = 460

 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R +R +  +TQ ++     F+ S+IS +E GK   ++  + ILA  LD PL  LL+
Sbjct: 20 NIREVRTKLNMTQAQLAAPE-FSISYISAIERGKIRPSLKALSILARRLDVPLTFLLE 76


>gi|121582580|ref|YP_974109.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42]
 gi|120608636|gb|ABM44374.1| helix-turn-helix domain protein [Acidovorax sp. JS42]
          Length = 120

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|73663255|ref|YP_302036.1| hypothetical protein SSP1946 [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72495770|dbj|BAE19091.1| hypothetical protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 274

 Score = 34.7 bits (78), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLD 74
          RKE   T KE+ N++G ++S+IS++E    ++   + ++ LA++LD
Sbjct: 11 RKEKGFTMKELANKSGISESYISKIENNSVSLPKKERLLSLAYSLD 56


>gi|289641241|ref|ZP_06473408.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289509003|gb|EFD29935.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 298

 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +L+ +E+ +RTG +QS IS +ETG  T + D++  +   LD P
Sbjct: 35 ELSGQELASRTGMSQSKISRIETGTVTPSPDDVEAIVRALDEP 77


>gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
 gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
          Length = 97

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          RK+  +TQ+E+ +R G  +S I  +E G ++  ++ +  ++  L+TP 
Sbjct: 34 RKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTPF 81


>gi|227872217|ref|ZP_03990579.1| XRE family transcriptional regulator [Oribacterium sinus F0268]
 gi|227841940|gb|EEJ52208.1| XRE family transcriptional regulator [Oribacterium sinus F0268]
          Length = 99

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          L+   I +    + RK++ +TQKE+   TG AQ  IS+LE G +  +I  +  LA  +
Sbjct: 25 LQPEHIVIQAMIDARKKSGMTQKELAEITGIAQGDISKLERGSANPSIRTLQRLAKGM 82


>gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 209

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + IR+   +TQKE  +  G  Q ++S +E GK  ++   +I L H+
Sbjct: 15 KEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIALCHS 60


>gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 292

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + IRKE K+TQKE+ +    +Q+ IS++E G+++  ID +  ++  L  PL  L +
Sbjct: 11 NEIKRIRKEKKMTQKELCDGIC-SQAEISKIENGRNSPTIDLLQQISKRLRVPLSLLFR 68


>gi|284048500|ref|YP_003398839.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
 gi|283952721|gb|ADB47524.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
          Length = 92

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           V++    R+E  ++Q+ +  R G  QS I+ +ET K+T  +D ++ L   LD  L
Sbjct: 31 IVSSIIRRRQELGISQRTLAERCGIPQSSIARIETLKTTPKLDTLVKLLQALDLKL 86


>gi|253580925|ref|ZP_04858187.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847767|gb|EES75735.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 69

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK+A LTQ++   R+G    ++ ELE GK T+ +D +
Sbjct: 15 RKKAGLTQEDFAIRSGLGLRFVRELEQGKETVRLDKV 51


>gi|153868942|ref|ZP_01998661.1| transcriptional regulator [Beggiatoa sp. PS]
 gi|152074493|gb|EDN71342.1| transcriptional regulator [Beggiatoa sp. PS]
          Length = 102

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          N +  RK   LTQK+I  RTG ++  I ++E G + ++I + +++   L
Sbjct: 23 NIKLARKRRTLTQKQISERTGLSRVTIRKIENGDAGVSIGHYLVVLAVL 71


>gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 237

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 14  AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            +++    F  N + +R +  LT KE+  +       +++LE+GK   +++++I L+  L
Sbjct: 69  GVVQSENTFSKNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEAL 128

Query: 74  DTP 76
           D P
Sbjct: 129 DAP 131


>gi|190571946|ref|YP_001967670.1| conjugal transfer protein TrbA [Comamonas testosteroni CNB-1]
 gi|311109687|ref|YP_003982539.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans
          A8]
 gi|119943684|gb|ABM06206.1| TrbA [Comamonas testosteroni CNB-1]
 gi|310764376|gb|ADP19824.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans
          A8]
          Length = 125

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M
Sbjct: 11 IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVM 56


>gi|55418008|ref|YP_133908.1| TrbA regulator protein [Plasmid pB3]
 gi|54969562|emb|CAG25998.1| TrbA regulator protein [Plasmid pB3]
          Length = 120

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|10955210|ref|NP_044239.1| hypothetical protein R751p28 [Enterobacter aerogenes]
 gi|77993230|ref|YP_358820.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8]
 gi|84310686|ref|YP_447016.1| conjugal transfer protein TrbA [uncultured bacterium]
 gi|115345483|ref|YP_771668.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|466379|gb|AAA17042.1| TrbA [Plasmid R751]
 gi|1572547|gb|AAC64442.1| TrbA [Enterobacter aerogenes]
 gi|77733983|emb|CAI10747.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8]
 gi|84094966|emb|CAJ15577.1| TrbA repressor protein [uncultured bacterium]
 gi|115286660|gb|ABI92134.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
          Length = 120

 Score = 34.7 bits (78), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14]
          Length = 116

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          KE  ++QKE   RTG A+S IS+ +  ++    D ++I+   LD   ++LL
Sbjct: 13 KEKGMSQKEFAQRTGIAESSISDWKKKRTNPVSDKILIICEVLDVTPYELL 63


>gi|45368590|ref|NP_990918.1| hypothetical protein pEST4011_44 [Achromobacter denitrificans]
 gi|44937759|gb|AAS49459.1| TrbA [Achromobacter denitrificans]
          Length = 125

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   + +E  +T+ ++  + G + S++S+L  GK+  ++  M  +A  L  PL  L
Sbjct: 5  IFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPTL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|31795118|ref|NP_857976.1| conjugal transfer protein TrbA [uncultured bacterium]
 gi|32455873|ref|NP_862526.1| TrbA protein [Pseudomonas sp. ADP]
 gi|49176918|ref|YP_025421.1| regulatory protein for mating pair formation [Ralstonia eutropha
          JMP134]
 gi|72384303|ref|YP_293656.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Ralstonia eutropha JMP134]
 gi|13937509|gb|AAK50320.1|U66917_89 TrbA protein [Pseudomonas sp. ADP]
 gi|31746362|emb|CAD97487.1| TrbA protein [uncultured bacterium]
 gi|39777498|gb|AAR31073.1| regulatory protein for mating pair formation [Ralstonia eutropha
          JMP134]
 gi|72123656|gb|AAZ65799.1| Helix-turn-helix motif [Ralstonia eutropha JMP134]
          Length = 120

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 490

 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          + F    +++RK+  LT  ++  R G A S +S LE GK    +  +  LA  L+ P+ +
Sbjct: 19 LAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLKSLATALNVPVEE 78

Query: 80 LLK 82
          LL+
Sbjct: 79 LLR 81


>gi|15903016|ref|NP_358566.1| hypothetical protein spr0972 [Streptococcus pneumoniae R6]
 gi|116515940|ref|YP_816428.1| hypothetical protein SPD_0951 [Streptococcus pneumoniae D39]
 gi|148989105|ref|ZP_01820495.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae
          SP6-BS73]
 gi|149019666|ref|ZP_01834985.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae
          SP23-BS72]
 gi|168491958|ref|ZP_02716101.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|168494498|ref|ZP_02718641.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|221231810|ref|YP_002510962.1| DNA_binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854561|ref|YP_002736073.1| hypothetical protein SPJ_1004 [Streptococcus pneumoniae JJA]
 gi|15458585|gb|AAK99776.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076516|gb|ABJ54236.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147925328|gb|EDK76406.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147931041|gb|EDK82021.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae
          SP23-BS72]
 gi|183573788|gb|EDT94316.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|183575609|gb|EDT96137.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|220674270|emb|CAR68810.1| putative DNA_binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225724252|gb|ACO20105.1| conserved domain protein [Streptococcus pneumoniae JJA]
 gi|301794185|emb|CBW36602.1| putative DNA_binding protein [Streptococcus pneumoniae INV104]
 gi|332202922|gb|EGJ16990.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 73

 Score = 34.7 bits (78), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R++R++  LTQK+I     F  S  +++E G+ T+  D ++ L++  D     LL+
Sbjct: 6  RDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLLE 61


>gi|299537817|ref|ZP_07051106.1| putative HTH-type transcriptional regulator [Lysinibacillus
          fusiformis ZC1]
 gi|298726796|gb|EFI67382.1| putative HTH-type transcriptional regulator [Lysinibacillus
          fusiformis ZC1]
          Length = 184

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 37/64 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++F  N + IR+  KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L     +
Sbjct: 6  LVFARNLKAIREREKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLRVSFTE 65

Query: 80 LLKP 83
          L+ P
Sbjct: 66 LMHP 69


>gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135]
 gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135]
          Length = 96

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + L   L T      K
Sbjct: 8  RNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63


>gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 104

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 9  PHLSDAI----LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          PH+++ +    L  + +   N R +R +  ++Q+ + +R G  ++ +S +E G   + +D
Sbjct: 4  PHMAENVSPRLLELQALIAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRLD 63

Query: 65 NMIILAHTLDTPLWKLL 81
           ++ LA  L     +LL
Sbjct: 64 TLVSLAAALGVSETELL 80


>gi|170720494|ref|YP_001748182.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169758497|gb|ACA71813.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 229

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M + +  +  RK A+LTQ E+   TG  Q+ IS+LE G+S  +  N  I      + +W
Sbjct: 1  MEYKDRIKAARKHARLTQAELAAMTGINQASISDLERGRSQRSSYNSTIARACGVSAIW 59


>gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AYE]
 gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AYE]
          Length = 210

 Score = 34.7 bits (78), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L
Sbjct: 40 TNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 89


>gi|238020422|ref|ZP_04600848.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC
          51147]
 gi|237867402|gb|EEP68408.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC
          51147]
          Length = 198

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 28 NIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPL 77
          N RK+A LTQ+E+    GF+ +  +S +E G++    D M+ ++   + PL
Sbjct: 11 NARKQANLTQEELAEAIGFSGKGSVSAIENGRNKPTFDIMVKISEVCNYPL 61


>gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC
          29799]
 gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC
          29799]
          Length = 89

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + +  R++RK+  LTQ+++  +   +  +I+++ETGK T  ++  +  A   D  L  LL
Sbjct: 8  YGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLDYLL 67


>gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
          23877]
          Length = 200

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D ++R+R+      R +R     + +E+  R   +QS +S +E G+  + +D ++ +A  
Sbjct: 12 DGLVRKRI------RALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARA 65

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 66 LDTTLDQLVE 75


>gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 210

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L    
Sbjct: 40 TNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGVDF 93


>gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198]
 gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198]
          Length = 102

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK+ KLT  E+  R G +Q   S LE G   I +D +I +++ L      LL
Sbjct: 16 RKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGISPQSLL 67


>gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AB056]
 gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AB058]
 gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AB059]
 gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
          Length = 183

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L
Sbjct: 13 TNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62


>gi|148545072|ref|YP_001272442.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM
          20016]
 gi|227364226|ref|ZP_03848322.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325683429|ref|ZP_08162945.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|148532106|gb|ABQ84105.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM
          20016]
 gi|227070771|gb|EEI09098.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324977779|gb|EGC14730.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 63

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +NN R  RK+ KL+Q E+    G A+  I+ +E  K    +   + LAH L T L
Sbjct: 1  MNNVRKYRKQQKLSQLELAKEIGVARQTINLIENDKYNPTLGLCLNLAHALHTDL 55


>gi|298206675|ref|YP_003714854.1| transcriptional regulator, XRE family protein [Croceibacter
          atlanticus HTCC2559]
 gi|83849306|gb|EAP87174.1| transcriptional regulator, XRE family protein [Croceibacter
          atlanticus HTCC2559]
          Length = 67

 Score = 34.7 bits (78), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F NN R +RKE   +Q+E+ ++    +++I  +E  +  I + N+  ++  LD  + +L 
Sbjct: 8  FGNNIRRLRKEQGFSQEELAHKADLHRTYIGMIERAEKNITLLNIGKISKALDVEIKELF 67


>gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 185

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F      +RKEA LTQ+++  +   ++  +++ E G+S  ++  +  +A T +  L +
Sbjct: 1  MVFSEQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|111026104|ref|YP_708387.1| repressor protein [Rhodococcus jostii RHA1]
 gi|110824947|gb|ABH00229.1| probable repressor protein [Rhodococcus jostii RHA1]
          Length = 200

 Score = 34.7 bits (78), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           ++R  A LTQK + NRTG + + I  +E G+ +++  +   LA  L
Sbjct: 133 DLRNLAGLTQKHVANRTGLSTTTIGRIERGEGSLSDRHATALAEAL 178


>gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri
          SD2112]
 gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri
          SD2112]
          Length = 108

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
          N R  R E  +TQ+++ N TG + ++IS LE G +  ++   ++ +A  L T + KL+
Sbjct: 7  NIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDKLV 64


>gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO]
 gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae
          TMO]
          Length = 177

 Score = 34.7 bits (78), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +R    LTQ+E+  RT  ++S+IS+LE+ K+++ +D +  +   L T L
Sbjct: 5  GKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDL 58


>gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans
          DSM 16841]
 gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans
          DSM 16841]
          Length = 145

 Score = 34.3 bits (77), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +E+++F  N   +RK   ++Q E+ ++ G ++  +S+ ETG+S  +I+    LA      
Sbjct: 3  KEKIMFAENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVT 62

Query: 77 LWKLL 81
          +  L+
Sbjct: 63 VDDLI 67


>gi|226328473|ref|ZP_03803991.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198]
 gi|225203206|gb|EEG85560.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198]
          Length = 109

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TP 76
          N  + +R++ K+T+ E+  R G      S+LE G   I +D +I +++ L  TP
Sbjct: 8  NRIKMLRRQLKITENEMSERLGITMLHYSQLEDGHIKITVDQLITISYILGVTP 61


>gi|116696126|ref|YP_841702.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530625|emb|CAJ96972.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 204

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          PH+ +++    M+     R +R   +LT  ++  + G ++  +S++ETG +   +D +  
Sbjct: 14 PHIEESV---GMVI----RELRLRERLTIAQVAEQAGLSRGMLSKIETGSTMAGMDTLAR 66

Query: 69 LAHTLDTPLWKLLK 82
          +A  L  P+  L  
Sbjct: 67 IARALGVPMAVLFS 80


>gi|262371152|ref|ZP_06064473.1| RtrR protein [Acinetobacter johnsonii SH046]
 gi|262313882|gb|EEY94928.1| RtrR protein [Acinetobacter johnsonii SH046]
          Length = 70

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  RKE K TQ+ +  + G  +S++  +E G+  I +  +  +AH L    + LL
Sbjct: 12 IRKKRKEKKFTQEALALQCGIDRSYLGRIERGEVNITVLKLYEIAHILKVEPYHLL 67


>gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900]
          Length = 183

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L
Sbjct: 13 TNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62


>gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii
          ACICU]
 gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter
          baumannii 1656-2]
          Length = 183

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L
Sbjct: 13 TNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62


>gi|13990971|dbj|BAB47254.1| y4dJ [Agrobacterium tumefaciens]
          Length = 70

 Score = 34.3 bits (77), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R IR   KLTQ+E+ +RTG +   I  +E  + +  +  +  +AH L     +L+
Sbjct: 4  NLRRIRHVKKLTQEELAHRTGLSVRHIGAIERAEMSATVTVLGQIAHALSVEPAELV 60


>gi|269955944|ref|YP_003325733.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269304625|gb|ACZ30175.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 266

 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R +R+ A +TQ+E+  R G  Q+ I+ +ETG+   ++  ++ LA      L   ++P
Sbjct: 11 LRRVREGAAMTQRELAQRAGVDQATIAGIETGRRMPSLPTLVRLAEAAGRQLRVEIEP 68


>gi|145295374|ref|YP_001138195.1| hypothetical protein cgR_1312 [Corynebacterium glutamicum R]
 gi|140845294|dbj|BAF54293.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 141

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           N RKE  L Q E+ +  G ++ +I ++E GK+T+ +D +I
Sbjct: 80  NGRKELGLRQGELADLAGVSERFIRDVEKGKTTVRLDKVI 119


>gi|332665060|ref|YP_004447848.1| helix-turn-helix domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333874|gb|AEE50975.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 174

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 10  HLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           H +  + R+R + V    R  RKEA LTQ+E+  R+G  + +IS +E   + I +  +
Sbjct: 100 HSTPDLNRDRGVPVGEVLRQARKEAGLTQEELAKRSGTTKHYISRIENHHADIEVGTL 157


>gi|167855811|ref|ZP_02478564.1| transcriptional regulator [Haemophilus parasuis 29755]
 gi|167853090|gb|EDS24351.1| transcriptional regulator [Haemophilus parasuis 29755]
          Length = 77

 Score = 34.3 bits (77), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + +R +   +Q+ + N     ++++S +E  +  +++ N+  LA  L  P W+LLK
Sbjct: 4  NIQTLRVQKGWSQERLENECELDRTYVSAVEHCRWNVSLSNIEKLATALSCPAWQLLK 61


>gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like,
          DNA-binding domain [Salinibacter ruber M8]
 gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like,
          DNA-binding domain [Salinibacter ruber M8]
          Length = 392

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  RK+A ++QKE+    G   S +S+ E+GK  I    +  LA     PL  L 
Sbjct: 13 LRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVPLSSLF 68


>gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis
          Aspo-2]
          Length = 108

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +RK+ +L+Q  +    G    ++ E+E G + I++ N+  +A  L    ++LL
Sbjct: 12 IRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNNISVKNLGQIAAALGVETYELL 67


>gi|167758839|ref|ZP_02430966.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC
          35704]
 gi|167663579|gb|EDS07709.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC
          35704]
          Length = 350

 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R  RKE  LTQ+++ +R G +   + + ETG S  +I  +  LA  L T L  LL
Sbjct: 8  RTRRKEMNLTQEQVASRLGVSAPAVHKWETGNSYPDITLLPALARLLGTDLNTLL 62


>gi|255014642|ref|ZP_05286768.1| putative DNA-binding protein [Bacteroides sp. 2_1_7]
          Length = 68

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +RK+ KLTQ+E+  ++G    ++ +LE GK T+ +D
Sbjct: 11 LRKQYKLTQEELSLKSGVGLRFVRDLEQGKETLRLD 46


>gi|162448725|ref|YP_001611092.1| Cro/CI family transcriptional regulator [Sorangium cellulosum 'So
          ce 56']
 gi|161159307|emb|CAN90612.1| transcriptional regulator, Cro/CI family [Sorangium cellulosum
          'So ce 56']
          Length = 92

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R++  +TQ+++    G     +  +E G+ ++++  ++ LA+ LD     LL
Sbjct: 13 IAANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPGVLL 72

Query: 82 K 82
          +
Sbjct: 73 R 73


>gi|116621181|ref|YP_823337.1| XRE family transcriptional regulator [Candidatus Solibacter
          usitatus Ellin6076]
 gi|116224343|gb|ABJ83052.1| transcriptional regulator, XRE family [Candidatus Solibacter
          usitatus Ellin6076]
          Length = 82

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  RK+  +TQK +   +G    +I ELE GK T  +  ++ + HTL 
Sbjct: 12 IRETRKKLGITQKTLALTSGTGLRFIIELEKGKETCEVGKVLTVLHTLG 60


>gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1]
 gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1]
          Length = 65

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L   +  +  
Sbjct: 1  MNRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGKSVESIFG 60

Query: 83 P 83
          P
Sbjct: 61 P 61


>gi|19352384|ref|NP_598142.1| TrbA protein [uncultured bacterium]
 gi|58616620|ref|YP_195829.1| conjugal transfer protein TrbA [Achromobacter xylosoxidans A8]
 gi|19070051|emb|CAD24367.1| TrbA protein [uncultured bacterium]
 gi|58416218|emb|CAI47813.1| transcriptional regulator [Achromobacter xylosoxidans]
          Length = 119

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 29/46 (63%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVM 50


>gi|329939039|ref|ZP_08288413.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus
          M045]
 gi|329301924|gb|EGG45817.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus
          M045]
          Length = 249

 Score = 34.3 bits (77), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R+  + +Q+E+ NR+  +   +S +ETG++    + ++ LA  LD PL
Sbjct: 5  LRGWRERRRFSQQELSNRSAVSTRHLSRVETGRARPTPEMILHLADHLDVPL 56


>gi|322386548|ref|ZP_08060175.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus
          ATCC 51100]
 gi|321269467|gb|EFX52400.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus
          ATCC 51100]
          Length = 136

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++IR+  +LTQ+ +  R   ++S I+  E+GK   +I N+I ++   D  L +L+K
Sbjct: 8  KDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQLIK 63


>gi|255100249|ref|ZP_05329226.1| hypothetical protein CdifQCD-6_05535 [Clostridium difficile
          QCD-63q42]
          Length = 72

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82
           + +RKE  +TQ E+  +  +++++IS+LE  +   INI  +I L+  L+    +L +
Sbjct: 2  LKKLRKERGMTQNELAEKANYSRAYISDLENKRYKNINISTIIDLSLALEIDFLELCR 59


>gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC
          BAA-613]
          Length = 184

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          R +RKE KLT K+I   TG +  +IS+LE G
Sbjct: 7  RKLRKEKKLTLKDIAEATGLSIGYISQLERG 37


>gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC
          17978]
 gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
 gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC
          17978]
 gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii TCDC-AB0715]
 gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
          Length = 183

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L
Sbjct: 13 TNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVL 62


>gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC
          12228]
 gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus
          epidermidis RP62A]
 gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus
          epidermidis M23864:W2(grey)]
 gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus
          epidermidis RP62A]
 gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus
          epidermidis M23864:W2(grey)]
 gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU144]
 gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU028]
 gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU045]
          Length = 179

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + L   L T      K
Sbjct: 8  RNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63


>gi|332521196|ref|ZP_08397654.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043289|gb|EGI79486.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 491

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + IR +  L+   +   +G ++S+++E+E GK     D + IL+  LD P  
Sbjct: 7  KLIFGLKLKQIRTDKDLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSERLDVPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 205

 Score = 34.3 bits (77), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R IRK  +LT K++  R+G A S +S++E  + +++ + +   A  L+  + ++ +
Sbjct: 25 LRAIRKRHELTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALEVDIAQIFR 81


>gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC
          43969]
 gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC
          43969]
          Length = 279

 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R +  +TQ+E+    G +Q  I  +ETGK    ++    +   L  PL
Sbjct: 19 NNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAARLEVAQAICSVLKKPL 72


>gi|160893918|ref|ZP_02074697.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50]
 gi|156864296|gb|EDO57727.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50]
          Length = 65

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          M  VNN + IR+   + Q ++   TGF    IS +E GK T + + M+
Sbjct: 1  MAVVNNLKEIRESRGIIQDDLAAATGFCTRTISRIERGKCTPSAEFML 48


>gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
 gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
          Length = 180

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          RN+R + +LTQ+E+  RT  ++ +IS+LE  +S+ +++    +   L
Sbjct: 8  RNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVL 54


>gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM
          17216]
 gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM
          17216]
          Length = 224

 Score = 34.3 bits (77), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
          +RK   LTQ+++  R G  ++ +S +ETGK+ ++  N  IL   L+  P W
Sbjct: 9  LRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDW 59


>gi|304439396|ref|ZP_07399308.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372178|gb|EFM25772.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 71

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N  + IR E KLTQK + +  G +++ IS +ETG+        +IL   LD
Sbjct: 9  NRLKEIRSEKKLTQKNLADMVGVSRNTISSIETGEFCPTSRLALILCIALD 59


>gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC
          35037]
          Length = 71

 Score = 34.3 bits (77), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RK+A+L+Q+ + ++ G  ++ IS  ETG S I+++N   +A      +  LL
Sbjct: 7  NRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTIDYLL 64


>gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC
          29799]
 gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC
          29799]
          Length = 360

 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++    N R +RKE  LTQ+++    G     +S+ ETG    ++  M+ LA   +T + 
Sbjct: 2  KVCLAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVD 61

Query: 79 KLL 81
           LL
Sbjct: 62 VLL 64


>gi|302347031|ref|YP_003815329.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella melaninogenica ATCC 25845]
 gi|302151120|gb|ADK97381.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella melaninogenica ATCC 25845]
          Length = 69

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           + +RKE  LTQ+++  + G    ++ E+E GK+T+ +D +
Sbjct: 10 LKQLRKEYHLTQEDMAFKAGVGLRFVREMEQGKATLRMDKV 50


>gi|119509218|ref|ZP_01628368.1| transcriptional regulator [Nodularia spumigena CCY9414]
 gi|119466060|gb|EAW46947.1| transcriptional regulator [Nodularia spumigena CCY9414]
          Length = 538

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           RK  +L+Q+E+   TG +QSWI ++E G+  +  ++  +L   L+
Sbjct: 487 RKNLQLSQRELAKLTGKSQSWIRDVENGRLKVKAEDQALLRKVLN 531


>gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1]
          Length = 180

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          RN+R + +LTQ+E+  RT  ++ +IS+LE  +S+ +++    +   L
Sbjct: 8  RNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVL 54


>gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
          Length = 169

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|149925664|ref|ZP_01913928.1| transcriptional regulator, XRE family protein [Limnobacter sp.
          MED105]
 gi|149825781|gb|EDM84989.1| transcriptional regulator, XRE family protein [Limnobacter sp.
          MED105]
          Length = 93

 Score = 34.3 bits (77), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R+E  LTQK++  R G  Q  +S LE    +I+++ +  +   L   L+    P
Sbjct: 15 IRTRRRELGLTQKQLGERLGIDQRTVSSLEKNPGSISVNRLFAVLDALQVSLYSSTDP 72


>gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1]
          Length = 180

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 30/47 (63%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          RN+R + +LTQ+E+  RT  ++ +IS+LE  +S+ +++    +   L
Sbjct: 8  RNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVL 54


>gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis
          subsp. lactis KF147]
 gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis
          Il1403]
 gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis
          subsp. lactis KF147]
          Length = 107

 Score = 34.3 bits (77), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RK   L+Q+E+  +   ++  IS+ ETGKS    D +I+L+   D  L  LLK
Sbjct: 11 RKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDTLLK 63


>gi|313905625|ref|ZP_07838987.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469572|gb|EFR64912.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 506

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  N   + RKE KL+Q+E+ + TG  +S +S+LE+     +I  +  L+  LD
Sbjct: 8  LLANTVVSKRKEKKLSQQELADATGINRSMLSKLESRDYIPSIPQLEALSEVLD 61


>gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R IR+   +TQ+++   +G +  +I E+E G+   ++ ++  LA     PL +L
Sbjct: 7  LFGKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLAEL 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|282866678|ref|ZP_06275719.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282558464|gb|EFB64025.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 87

 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +R E   T  E+  R+G A+  + +LE G++   +     LAH  D P+ +LL 
Sbjct: 20 LRNERGWTFDELAGRSGLARRTLIDLEHGRAAGTVTTWHALAHAFDVPIEQLLG 73


>gi|290959281|ref|YP_003490463.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260648807|emb|CBG71921.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 432

 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          R  R   + +QK++    G+ QS +S LE+G+ T ++  +  +A  LD P  +L
Sbjct: 19 RQARALQRRSQKDVAAALGYHQSKVSRLESGRGTEDVRTLREVAQVLDIPPHRL 72


>gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis
          FRI909]
          Length = 179

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + L   L T      K
Sbjct: 8  RNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63


>gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 65

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L T +
Sbjct: 1  MNKIAELRKEKLISQEKLAAKVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSV 55


>gi|195977160|ref|YP_002122404.1| hypothetical protein Sez_0004 [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195973865|gb|ACG61391.1| hypothetical protein Sez_0004 [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 121

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F    +  R E +L+Q  +  +   ++  IS+ E G +T++++N++ LA  L+  L
Sbjct: 5  FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTL 60


>gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO]
 gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga
          lettingae TMO]
          Length = 131

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          RK+  LTQK++  + G +QS +S++ETG+  I+I
Sbjct: 43 RKKHNLTQKDLAKKLGISQSMVSKIETGEKNISI 76


>gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 111

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +TQ+++   +GF+ S IS  ETG++  +I+N+I L+  L+  +   L
Sbjct: 19 ITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVGIDYFL 65


>gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis
          BSn5]
 gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          yqaE
 gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis]
 gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis]
 gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element
          [Bacillus subtilis BSn5]
          Length = 116

 Score = 34.3 bits (77), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N +  RK+ KLTQ+ + ++ G  +   +  E G    +   +I +++ LD  L  L
Sbjct: 1  MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
 gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 206

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D+++R+R       R +R     + +E+  R   +QS +S +E G   + +D ++ LA  
Sbjct: 18 DSLVRKR------IRALRVAQGWSLEELAARGRLSQSTLSRIENGHRRLALDQLVTLARA 71

Query: 73 LDTPLWKLLK 82
          LDT L +L++
Sbjct: 72 LDTSLDQLVE 81


>gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44]
 gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44]
          Length = 181

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 30/40 (75%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + +RKE KLT K+I ++T  + S++S++E  KS+I ++++
Sbjct: 10 KRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESL 49


>gi|163942112|ref|YP_001646996.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229013578|ref|ZP_04170711.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
 gi|163864309|gb|ABY45368.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228747738|gb|EEL97608.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
          Length = 194

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IR+   +T  +I   TG ++ ++S++E  K++ +I  + ++A+ L+ PL  LL
Sbjct: 20 IREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 75


>gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
          11154]
 gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
          11154]
          Length = 171

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R+E  +TQ E+  +   +   IS  ETGK+  ++DN++ +A  L   L K
Sbjct: 1  MTFAQIIKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDK 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229169105|ref|ZP_04296820.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|228614333|gb|EEK71443.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
          Length = 181

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IR+   +T  +I   TG ++ ++S++E  K++ +I  + ++A+ L+ PL  LL
Sbjct: 7  IREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62


>gi|148998894|ref|ZP_01826330.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae
          SP11-BS70]
 gi|168576210|ref|ZP_02722104.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194397548|ref|YP_002037696.1| hypothetical protein SPG_0986 [Streptococcus pneumoniae G54]
 gi|225856709|ref|YP_002738220.1| hypothetical protein SPP_1071 [Streptococcus pneumoniae P1031]
 gi|307067756|ref|YP_003876722.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|147755321|gb|EDK62372.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae
          SP11-BS70]
 gi|183577909|gb|EDT98437.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194357215|gb|ACF55663.1| conserved domain protein [Streptococcus pneumoniae G54]
 gi|225725852|gb|ACO21704.1| conserved domain protein [Streptococcus pneumoniae P1031]
 gi|306409293|gb|ADM84720.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|332200556|gb|EGJ14628.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
          Length = 73

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R++R++  LTQK+I     F  S  +++E G+ T+  D ++ L++  D     LL
Sbjct: 6  RDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLL 60


>gi|153954623|ref|YP_001395388.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855101|ref|YP_002472223.1| hypothetical protein CKR_1758 [Clostridium kluyveri NBRC 12016]
 gi|146347481|gb|EDK34017.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219568825|dbj|BAH06809.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 171

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+E  +TQ+E+   +  +   IS +ETG+  +  DN+ I+   LD P 
Sbjct: 10 REEKGMTQQELGQMSFLSDKTISAIETGRRNLTKDNLRIICKELDNPF 57


>gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 101

 Score = 34.3 bits (77), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL-WKLL 81
          RKE  +T  ++  + G +Q  +S  E G + IN+ +++ +A  L+TP+ W  L
Sbjct: 18 RKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASILETPINWFFL 70


>gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 179

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L
Sbjct: 8  RRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNL 58


>gi|254511384|ref|ZP_05123451.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221535095|gb|EEE38083.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 196

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R++  L+Q+ +  R G  QS IS++E     +   ++  +AH LD  L
Sbjct: 12 LRKAREQKGLSQRALSARAGVPQSHISKIENNTVDLRTSSLTAIAHALDLEL 63


>gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787]
 gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787]
          Length = 122

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          LTQ+ I ++ G     +S +ETG +++++  ++ +A+TL   +  LL
Sbjct: 21 LTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLTVSVNDLL 67


>gi|329936105|ref|ZP_08285904.1| putative transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329304423|gb|EGG48302.1| putative transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 87

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +R E   T  E+ + +G A+  + +LE G++T ++     LAHT D P+   L 
Sbjct: 20 LRAERGWTFDELADHSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIEYFLG 73


>gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118]
 gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain
          [Rhodoferax ferrireducens T118]
          Length = 201

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          + EP  S+A+L +R+      R  R +   T ++    TG A+S +S++E G  +   D 
Sbjct: 4  QSEPSSSEALLGQRI------RAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDA 57

Query: 66 MIILAHTLDTPLWKLLKP 83
          +I LA  L   + +L +P
Sbjct: 58 LIKLATGLQIDISELFEP 75


>gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
          Length = 67

 Score = 34.3 bits (77), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH----TLDT 75
          M+  N+ +  R  A  +QKE+ ++TG  +  +S +E G    ++   + L H    TLDT
Sbjct: 1  MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDT 60

Query: 76 PLW 78
            W
Sbjct: 61 VFW 63


>gi|229062058|ref|ZP_04199383.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
 gi|228717210|gb|EEL68885.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
          Length = 181

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IR+   +T  +I   TG ++ ++S++E  K++ +I  + ++A+ L+ PL  LL
Sbjct: 7  IREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62


>gi|218780458|ref|YP_002431776.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761842|gb|ACL04308.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 209

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N    R    +TQ ++   +G +++ I++LE G+    +  +I L+ +LD+  W LL
Sbjct: 13 LAKNIVVARSALGITQGDLAKDSGISRATIAQLEAGEGDPKLSTLISLSKSLDSTHWHLL 72


>gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC
          35704]
 gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC
          35704]
          Length = 134

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            NN R +RK+  LTQ  + N    ++   S  ET K T ++D+++ LA
Sbjct: 6  LANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLA 54


>gi|153950714|ref|YP_001399331.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|152962209|gb|ABS49670.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
          Length = 135

 Score = 34.3 bits (77), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R  F    + +RK+   TQKE+  R G   S  ++ E+G      D +I LA  L T +
Sbjct: 14 QRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI 73

Query: 78 WKLL 81
            LL
Sbjct: 74 DYLL 77


>gi|325002595|ref|ZP_08123707.1| helix-turn-helix domain-containing protein [Pseudonocardia sp.
          P1]
          Length = 225

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           R +R+ A+L+Q+E+  RTG A+S I  +E+     ++D +
Sbjct: 21 VRAVRRRAELSQRELAERTGLARSTIGRIESRSLAPSLDTL 61


>gi|270290145|ref|ZP_06196371.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|304385594|ref|ZP_07367938.1| XRE family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
 gi|270281682|gb|EFA27514.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
 gi|304328098|gb|EFL95320.1| XRE family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
          Length = 91

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +TQKE+  R G AQS I+++E+  ST +++ +   AH L   +   LKP
Sbjct: 38 ITQKELGKRIGMAQSRIAKIESLDSTPSLETLNRYAHGLGLEIKLTLKP 86


>gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
 gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
          Length = 218

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+  E  L  AI RE        R+ R++  +T  ++ N TG +   +S++E G ++ ++
Sbjct: 23 REGSEKVLEVAIGRE-------VRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSL 75

Query: 64 DNMIILAHTLDTPLWKLLK 82
            + +LA+ L  P+    +
Sbjct: 76 TTLQLLANALSVPITSFFR 94


>gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium]
 gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 122

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 29/47 (61%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           TQ+ + +R G +   +S +ETG S++++  ++ +A+ L   + +LL
Sbjct: 21 FTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLSVSVDELL 67


>gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL
          J1-175]
 gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL
          N1-017]
 gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL
          N1-017]
 gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816]
 gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220]
 gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A]
          Length = 169

 Score = 34.3 bits (77), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|330502985|ref|YP_004379854.1| XRE family transcriptional regulator [Pseudomonas mendocina
          NK-01]
 gi|328917271|gb|AEB58102.1| XRE family transcriptional regulator [Pseudomonas mendocina
          NK-01]
          Length = 190

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83
          ++RK  K+T  E+  R G +  ++S++E G S   + ++  +A  LD P    + L KP
Sbjct: 21 DLRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAIAEALDVPTTYFYSLPKP 79


>gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 96

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + +R E  L+Q++      F ++++S+LE   + I+ID +  LA  L   + +LL+
Sbjct: 30 NLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTNISIDGLERLAEALGVDITELLQ 87


>gi|16081273|ref|NP_393584.1| hypothetical protein Ta0106 [Thermoplasma acidophilum DSM 1728]
 gi|10639252|emb|CAC11254.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 194

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          E M  +   R +RK   ++QK++   TG +QS+I+ LE G  TIN
Sbjct: 2  EMMPNIEELRKMRKNLGISQKDLAKVTGVSQSYIARLEKG--TIN 44


>gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family
          [Gardnerella vaginalis 409-05]
 gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family
          [Gardnerella vaginalis 409-05]
          Length = 94

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57
          RK A LTQ E+  +TG +QS IS LE G
Sbjct: 38 RKRAGLTQAELSEKTGISQSDISRLENG 65


>gi|261881030|ref|ZP_06007457.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270332210|gb|EFA42996.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 101

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57
          RKEAK+TQ E+  + G  +S+IS++E G
Sbjct: 47 RKEAKMTQTELAEKAGTTKSYISKIENG 74


>gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064]
          Length = 169

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e]
 gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland
          1988]
 gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL
          R2-561]
 gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S]
 gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161]
 gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28]
 gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578]
 gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923]
 gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e]
 gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578]
 gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923]
 gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 169

 Score = 33.9 bits (76), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL
          F2-515]
          Length = 163

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459]
 gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype
          4b str. CLIP 80459]
 gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
          Length = 169

 Score = 33.9 bits (76), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 345

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  RKEA +TQ+E+ NR G     +++ E   S  +I+ +  +A  LD  L  LL
Sbjct: 8  KKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLL 62


>gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 67

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH----TLDT 75
          M+  N+ +  R  A  +QKE+ ++TG  +  +S +E G    ++   + L H    TLDT
Sbjct: 1  MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDT 60

Query: 76 PLW 78
            W
Sbjct: 61 VFW 63


>gi|197123733|ref|YP_002135684.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173582|gb|ACG74555.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 733

 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + + + +R++AK+TQK++ +R G  QS +S  E     IN
Sbjct: 2  IPDLKKLREQAKMTQKDLADRIGIDQSQVSRYEADPDGIN 41


>gi|51597909|ref|YP_072100.1| transcriptional regulatory protein [Yersinia pseudotuberculosis
          IP 32953]
 gi|108809407|ref|YP_653323.1| putative transcriptional regulator [Yersinia pestis Antiqua]
 gi|108813719|ref|YP_649486.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|145597534|ref|YP_001161610.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|153997450|ref|ZP_02022550.1| putative transcriptional regulatory protein [Yersinia pestis
          CA88-4125]
 gi|165927582|ref|ZP_02223414.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165937413|ref|ZP_02225976.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|166012119|ref|ZP_02233017.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166214594|ref|ZP_02240629.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167420515|ref|ZP_02312268.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167425474|ref|ZP_02317227.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|167466471|ref|ZP_02331175.1| putative transcriptional regulatory protein [Yersinia pestis
          FV-1]
 gi|218930622|ref|YP_002348497.1| putative transcriptional regulator [Yersinia pestis CO92]
 gi|229836747|ref|ZP_04456912.1| putative transcriptional regulatory protein [Yersinia pestis
          Pestoides A]
 gi|229839352|ref|ZP_04459511.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229899916|ref|ZP_04515057.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229904228|ref|ZP_04519339.1| putative transcriptional regulatory protein [Yersinia pestis
          Nepal516]
 gi|270488666|ref|ZP_06205740.1| helix-turn-helix containing protein [Yersinia pestis KIM D27]
 gi|294505211|ref|YP_003569273.1| putative transcriptional regulatory protein [Yersinia pestis
          Z176003]
 gi|51591191|emb|CAH22856.1| putative transcriptional regulatory protein [Yersinia
          pseudotuberculosis IP 32953]
 gi|108777367|gb|ABG19886.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781320|gb|ABG15378.1| putative transcriptional regulatory protein [Yersinia pestis
          Antiqua]
 gi|115349233|emb|CAL22200.1| putative transcriptional regulatory protein [Yersinia pestis
          CO92]
 gi|145209230|gb|ABP38637.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149289087|gb|EDM39167.1| putative transcriptional regulatory protein [Yersinia pestis
          CA88-4125]
 gi|165914518|gb|EDR33132.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165920476|gb|EDR37753.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165988959|gb|EDR41260.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166204216|gb|EDR48696.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166961321|gb|EDR57342.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167055488|gb|EDR65281.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|229678346|gb|EEO74451.1| putative transcriptional regulatory protein [Yersinia pestis
          Nepal516]
 gi|229687408|gb|EEO79483.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229695718|gb|EEO85765.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229705690|gb|EEO91699.1| putative transcriptional regulatory protein [Yersinia pestis
          Pestoides A]
 gi|262363273|gb|ACY59994.1| putative transcriptional regulatory protein [Yersinia pestis
          D106004]
 gi|262367348|gb|ACY63905.1| putative transcriptional regulatory protein [Yersinia pestis
          D182038]
 gi|270337170|gb|EFA47947.1| helix-turn-helix containing protein [Yersinia pestis KIM D27]
 gi|294355670|gb|ADE66011.1| putative transcriptional regulatory protein [Yersinia pestis
          Z176003]
 gi|320017231|gb|ADW00803.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Medievalis str. Harbin 35]
          Length = 135

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R  F    + +RK+   TQKE+  R G   S  ++ E+G      D +I LA  L T +
Sbjct: 14 QRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI 73

Query: 78 WKLL 81
            LL
Sbjct: 74 DYLL 77


>gi|325475638|gb|EGC78814.1| DNA-binding protein [Treponema denticola F0402]
          Length = 65

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK A LTQ++   R G    ++ ELE GK T+ +D +
Sbjct: 12 RKSAGLTQEDFAIRAGLGLRFVRELEQGKETVRMDKV 48


>gi|297204945|ref|ZP_06922342.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148801|gb|EDY55759.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 104

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +R E   T  E+ + +G A+  + +LE G++T ++     LAHT D P+   L 
Sbjct: 37 LRAERGWTFDELADHSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIEHFLS 90


>gi|282879967|ref|ZP_06288689.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella timonensis CRIS 5C-B1]
 gi|281306081|gb|EFA98119.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella timonensis CRIS 5C-B1]
          Length = 101

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57
          RKEAK+TQ E+  + G  +S+IS++E G
Sbjct: 47 RKEAKMTQTELAEKAGTTKSYISKIENG 74


>gi|329577950|gb|EGG59368.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 365

 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 5  DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42


>gi|282878487|ref|ZP_06287271.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella buccalis ATCC 35310]
 gi|281299393|gb|EFA91778.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella buccalis ATCC 35310]
          Length = 101

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57
          RKEAK+TQ E+  + G  +S+IS++E G
Sbjct: 47 RKEAKMTQTELAEKAGTTKSYISKIENG 74


>gi|111038055|ref|YP_709142.1| conjugal transfer protein TrbA [IncP-1 plasmid pKJK5]
 gi|110781060|emb|CAK02644.1| transcriptional regulator protein [IncP-1 plasmid pKJK5]
          Length = 124

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++IF  N   I  E  +T+ E+  R+G + S++S+L TGK+  ++  M  +A
Sbjct: 3  KVIFFTNVLRILDERGMTKNELSERSGVSISFLSDLTTGKANPSLKVMEAIA 54


>gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217]
 gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217]
          Length = 244

 Score = 33.9 bits (76), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +R+ + L+QK++    G  Q   S +E G+++I  ++++ L+     P  ++LK
Sbjct: 7  LKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVPTDRILK 63


>gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp.
          3_2_56FAA]
 gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp.
          3_2_56FAA]
          Length = 302

 Score = 33.9 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 38/62 (61%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +++R++AK++Q+++  +   ++  +++ ETG    +I+N+  +A   D  + +L
Sbjct: 1  MFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDEL 60

Query: 81 LK 82
          L+
Sbjct: 61 LE 62


>gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99]
          Length = 169

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239]
 gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239]
          Length = 141

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M F N  + +RKE  ++Q+++      ++  IS+ E+GK+  +I+N+I+L       L
Sbjct: 1  MGFNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSL 58


>gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
          Length = 169

 Score = 33.9 bits (76), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 197

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD  + +L+
Sbjct: 26 SIRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVSQLI 82


>gi|166366162|ref|YP_001658435.1| hypothetical protein MAE_34210 [Microcystis aeruginosa NIES-843]
 gi|166088535|dbj|BAG03243.1| hypothetical protein MAE_34210 [Microcystis aeruginosa NIES-843]
          Length = 113

 Score = 33.9 bits (76), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 29/46 (63%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          ++      + IRK   ++QKE+  R   +QS ++++E+G S++++D
Sbjct: 36 KLALGRKLKEIRKSQNISQKELAKRMESSQSRVAKIESGDSSVSLD 81


>gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 192

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +R E K T K +  +TG +  ++S+ E G ++I ID++  +A  L+  L
Sbjct: 12 KELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVEL 62


>gi|89096264|ref|ZP_01169157.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89089118|gb|EAR68226.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 73

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R +A+LTQ+E+ +R G  +  +S +E GK   ++   + + + + + L +L 
Sbjct: 8  NNVKQARLQAELTQQELADRVGITRQTVSLIEKGKYNPSLKLCLQICYAVQSKLDELF 65


>gi|315169296|gb|EFU13313.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
          Length = 445

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 23 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 60


>gi|153833004|ref|ZP_01985671.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01]
 gi|156977184|ref|YP_001448090.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116]
 gi|269963350|ref|ZP_06177680.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3]
 gi|148870725|gb|EDL69631.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01]
 gi|156528778|gb|ABU73863.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116]
 gi|269831924|gb|EEZ86053.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3]
          Length = 207

 Score = 33.9 bits (76), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          ++IR +  +T +E   RTG A+S +S++E  + +     M  LAH L   + +L +P
Sbjct: 33 KDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLFEP 89


>gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 184

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 32/52 (61%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R++ K+T +E+  + G   S +S++E G+   +I+ + +++  L+ P++K  
Sbjct: 14 REQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMFKFF 65


>gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 69

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N  ++IRKE  L+Q ++ N  G +++ IS +ETG+        +ILA  L+
Sbjct: 9  NRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIALE 59


>gi|290956648|ref|YP_003487830.1| hypothetical protein SCAB_21521 [Streptomyces scabiei 87.22]
 gi|260646174|emb|CBG69267.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 454

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTP 76
          R IR+ AKL Q ++ + TG +Q ++S LE G +   ++D + +    ++TP
Sbjct: 25 RLIRERAKLRQDDMADLTGLSQGFVSMLEAGTRRLTSLDKVAMFLRGIETP 75


>gi|297567303|ref|YP_003686275.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296851752|gb|ADH64767.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
          9946]
          Length = 130

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 33/64 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R E     K++  ++G +  ++S+LE G++  +++ +  LA T    +  
Sbjct: 1  MTLAERLRELRSERGWRLKDLSEQSGLSVPYLSDLERGRTNPSLETLNTLARTYAMSVQD 60

Query: 80 LLKP 83
          LL+P
Sbjct: 61 LLEP 64


>gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905]
 gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905]
          Length = 181

 Score = 33.9 bits (76), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK   LT +E+    G   S +S++E G +  +I  + +LA TLD P +   
Sbjct: 14 RKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPTFTFF 65


>gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1]
          Length = 290

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A+L  R+   +  +  R    +++K++ +  G ++ ++++LE G++ ++++ + +LA  +
Sbjct: 8  AVLSRRL--GDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAM 65

Query: 74 DTPLWKLLK 82
          DT +  L++
Sbjct: 66 DTAITDLIE 74


>gi|222084616|ref|YP_002543145.1| transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221722064|gb|ACM25220.1| transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 265

 Score = 33.9 bits (76), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +Q ++   TG +Q  IS +E+G+ST    N++ LA  LD PL
Sbjct: 19 SQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLAEVLDVPL 60


>gi|312901705|ref|ZP_07760974.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|311291174|gb|EFQ69730.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|315148196|gb|EFT92212.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
          Length = 427

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 5  DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42


>gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 115

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +N+RKEA LTQ ++  + G +Q   +  E G      DN++ L+  L   +  
Sbjct: 1  MEFSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|29377017|ref|NP_816171.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29344483|gb|AAO82241.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 427

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 5  DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42


>gi|27379415|ref|NP_770944.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352566|dbj|BAC49569.1| blr4304 [Bradyrhizobium japonicum USDA 110]
          Length = 226

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +  R+   LT K++  RTG A S +S++E G  ++  D ++ L   L   + +L  P
Sbjct: 18 LKAARQARGLTLKQVAERTGMALSTLSKVENGLMSLTYDKLLQLTSGLKMEIAELFNP 75


>gi|315036199|gb|EFT48131.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
          Length = 438

 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 16 DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 53


>gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 197

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R+E KL+  E+  R+G ++  +S++E G     ID++  +A  L   + +L
Sbjct: 7  LVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADALHLTMRRL 66

Query: 81 L 81
          +
Sbjct: 67 V 67


>gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
 gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
          Length = 272

 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N    RKE +LTQ+ + ++ G     +S+ ETG++  +I  +  L+  LD  + 
Sbjct: 2  RDMLAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61

Query: 79 KLL 81
          KL 
Sbjct: 62 KLF 64


>gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 180

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +RK+ KLTQK +   TG ++S++S++E  +   + D +  LA++L   L
Sbjct: 10 LRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALANSLKLDL 58


>gi|186680864|ref|YP_001864060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nostoc punctiforme PCC 73102]
 gi|186463316|gb|ACC79117.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc
           punctiforme PCC 73102]
          Length = 531

 Score = 33.9 bits (76), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           RK   L+Q+E+   TG +QSWI ++E G+    +++ ++L   L+
Sbjct: 483 RKNLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQLLLRKVLN 527


>gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A]
 gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A]
          Length = 100

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          RK+A +TQ E+  + G  +S+IS +ETGK+   +     +A  L
Sbjct: 47 RKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASAL 90


>gi|153954232|ref|YP_001394997.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854837|ref|YP_002471959.1| hypothetical protein CKR_1494 [Clostridium kluyveri NBRC 12016]
 gi|146347113|gb|EDK33649.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568561|dbj|BAH06545.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 226

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R + KE  L+ +++ + +G   + IS +  GK + N++++ IL+  L+ P+ KLL
Sbjct: 15 RTLLKENSLSMRKLSSISGIDTATISRIVNGKQSANMNHLRILSKYLNVPIKKLL 69


>gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 222

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +R++ KLT +++  + G + S++S++E G+S  ++  +  LA  L T +  LL
Sbjct: 7  LKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSYLL 62


>gi|315576305|gb|EFU88496.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315582797|gb|EFU94988.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
          Length = 427

 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 5  DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42


>gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
 gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
          Length = 69

 Score = 33.9 bits (76), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RK+++L+Q+ + ++ G  ++ IS  ETG S I+++N   +A      +  LL
Sbjct: 7  NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLL 64


>gi|329848110|ref|ZP_08263138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
 gi|328843173|gb|EGF92742.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
          Length = 261

 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F  + ++ R   +++Q ++    G +Q  +S +ETG+S  + D +I LA  LD PL
Sbjct: 5  FGEHLKHWRARRRISQLDLALDAGISQKHLSFVETGRSVPSRDMVIRLAEVLDMPL 60


>gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC
          8492]
 gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC
          8492]
 gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 161

 Score = 33.9 bits (76), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          E   ++ IL+ER    N    +RK+  +TQ+E+ N  G  +  I+++E G   ++ID
Sbjct: 5  EGKCTEKILKERERIGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSID 61


>gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM
           13479]
 gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM
           13479]
          Length = 151

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           + +LRE     N  R IR E   TQ ++    G  +++  ++E G+S+I ++ + +L  T
Sbjct: 47  EELLRE---MGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSIALEKLALLNET 103

Query: 73  LDTPLWKLL 81
           +D  L  L+
Sbjct: 104 MDIDLNYLI 112


>gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC
          27750]
 gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC
          27750]
          Length = 115

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N  R +R+E  +TQ  +    G AQ  IS  E G+   ++  +I L+  LD  +
Sbjct: 6  NRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASM 59


>gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL
          4222]
 gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL
          4222]
          Length = 65

 Score = 33.9 bits (76), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L T +
Sbjct: 1  MNKIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSV 55


>gi|288800505|ref|ZP_06405963.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332718|gb|EFC71198.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 299 str. F0039]
          Length = 102

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 21/28 (75%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG 57
          RK+AK+TQ E+  R G  +S+IS++E G
Sbjct: 47 RKDAKVTQSELAQRVGTTKSYISKIENG 74


>gi|266622898|ref|ZP_06115833.1| DNA-binding protein [Clostridium hathewayi DSM 13479]
 gi|288865341|gb|EFC97639.1| DNA-binding protein [Clostridium hathewayi DSM 13479]
          Length = 110

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          RN RK   LT  E+  + G A  +  ++E G   ++ID ++ L  TL+
Sbjct: 13 RNRRKALGLTSAEVAEKIGRADHYYGDIERGTCGMSIDTLVELTRTLE 60


>gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC
           29799]
 gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC
           29799]
          Length = 155

 Score = 33.9 bits (76), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 15  ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +++ ++      +  R+E+ LTQKE+ ++    ++ +S  E GKS  +++ ++ LA+   
Sbjct: 46  VMKRKIAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYG 105

Query: 75  TPLWKLL 81
             L  L+
Sbjct: 106 VSLDYLM 112


>gi|312889943|ref|ZP_07749487.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311297475|gb|EFQ74600.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 67

 Score = 33.9 bits (76), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK  KLTQ+E+ ++ G     + E+E GK+T+ +D +
Sbjct: 10 RKAFKLTQQELADKAGVGLRVVREMEQGKATLRMDKV 46


>gi|256958187|ref|ZP_05562358.1| transcriptional regulator [Enterococcus faecalis DS5]
 gi|256948683|gb|EEU65315.1| transcriptional regulator [Enterococcus faecalis DS5]
          Length = 427

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+
Sbjct: 5  DLKRYRKELKLKQQELASKLGIERSLISKIESGKRVIS 42


>gi|330826831|ref|YP_004390134.1| y4mF family transcriptional regulator [Alicycliphilus
          denitrificans K601]
 gi|329312203|gb|AEB86618.1| transcriptional regulator, y4mF family [Alicycliphilus
          denitrificans K601]
          Length = 81

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP       HL D +           R+ RK   LTQ ++    G    +I +LE GK T
Sbjct: 1  MPTLIETPEHLGDVV-----------RHTRKALSLTQPQLALAAGVGVRFIVDLEAGKPT 49

Query: 61 INIDNMI----ILAHTLD 74
          + ++N++    +L  TL 
Sbjct: 50 VRLENILRVLQVLGATLS 67


>gi|160887942|ref|ZP_02068945.1| hypothetical protein BACUNI_00346 [Bacteroides uniformis ATCC
          8492]
 gi|270294779|ref|ZP_06200980.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317477790|ref|ZP_07936981.1| y4mF family transcriptional regulator [Bacteroides sp. 4_1_36]
 gi|156862628|gb|EDO56059.1| hypothetical protein BACUNI_00346 [Bacteroides uniformis ATCC
          8492]
 gi|270274026|gb|EFA19887.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316906048|gb|EFV27811.1| y4mF family transcriptional regulator [Bacteroides sp. 4_1_36]
          Length = 74

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          E+       + +RK+  LTQ E+  ++G    ++ ELE GK T+ +D +
Sbjct: 5  EQTTLSKYVKAMRKQYNLTQVELSEKSGVGLRFVRELEQGKQTLRLDKV 53


>gi|126740274|ref|ZP_01755963.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126718729|gb|EBA15442.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 231

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 9   PHLSDAILRERMIFVN---NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           PH   +  RE+++ V      R  R++ ++T  E+   TG +   +S++E G ++ ++  
Sbjct: 31  PHSLRSSDREKVLEVAIGREVRAFRRQKEITVAELAQITGLSIGMLSKIENGNTSPSLTT 90

Query: 66  MIILAHTLDTPL 77
           + ILA+ L  PL
Sbjct: 91  LQILANALSVPL 102


>gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150]
 gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150]
          Length = 159

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+   N + +RK  +LTQ E+ N  G +++ +S  E G S I+ + +  +  TL+     
Sbjct: 1  MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|307710038|ref|ZP_07646483.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619223|gb|EFN98354.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 70

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +RKE  +TQK++  + G +++   + E G+     D M I+A  L+  + ++ 
Sbjct: 7  QLRKEKGITQKQLARKLGISETAYRQKERGQRAFKSDEMFIIADVLEKDIGEIF 60


>gi|283795792|ref|ZP_06344945.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
 gi|291076424|gb|EFE13788.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
          Length = 66

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          M  VNN + IR++  + Q E+   TG+    I  +E G+ST + + M+
Sbjct: 1  MAVVNNIKEIREQRGIYQDELAEATGYCTKTIGRIERGESTPSAEFML 48


>gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 220

 Score = 33.9 bits (76), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 22/28 (78%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTIN 62
          LTQK++  + G A+S+I+E+E+G+  IN
Sbjct: 17 LTQKQLAKKLGVAESFINEVESGRKIIN 44


>gi|269976764|ref|ZP_06183739.1| putative transcriptional regulator [Mobiluncus mulieris 28-1]
 gi|269934961|gb|EEZ91520.1| putative transcriptional regulator [Mobiluncus mulieris 28-1]
          Length = 69

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +RKE KL+Q+E+    G  +  I+ +ETGK   ++     +AH  D
Sbjct: 7  QLRKERKLSQEELGTAVGVTRQTITSIETGKYVASLPLAYKIAHYFD 53


>gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
          1003]
 gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
          1003]
          Length = 184

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ R +RK   LT K +    G +  W+S++E G++T ++ ++ +LA  L   L
Sbjct: 7  DDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTL 60


>gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353]
 gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353]
          Length = 490

 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          RKE KLTQ ++   TG  +  IS LE+   T +ID +  +A  L+
Sbjct: 17 RKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVLN 61


>gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 294

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + IRK+  L+Q++   + G ++  I++ ET     +IDN+I +    D  + +
Sbjct: 1  MKFSQKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDE 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753]
 gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753]
          Length = 169

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVLL 61


>gi|22124180|ref|NP_667603.1| transcriptional repressor [Yersinia pestis KIM 10]
 gi|45443665|ref|NP_995204.1| putative transcriptional regulator [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21956939|gb|AAM83854.1|AE013626_1 transcriptional repressor [Yersinia pestis KIM 10]
 gi|45438535|gb|AAS64081.1| putative transcriptional regulatory protein [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 162

 Score = 33.9 bits (76), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +R  F    + +RK+   TQKE+  R G   S  ++ E+G      D +I LA  L T +
Sbjct: 41  QRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI 100

Query: 78  WKLL 81
             LL
Sbjct: 101 DYLL 104


>gi|229194008|ref|ZP_04320903.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876]
 gi|228589445|gb|EEK47369.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876]
          Length = 65

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L T +
Sbjct: 1  MNKIAELRKEKLISQEKLAAQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSV 55


>gi|227872629|ref|ZP_03990961.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841516|gb|EEJ51814.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 96

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +TQK++ N+TG  QS IS+LE G    +I  +  LA  +D  L
Sbjct: 42 MTQKDLSNKTGINQSEISKLENGTRNPSIKLLQRLAEGMDMVL 84


>gi|255101457|ref|ZP_05330434.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255307330|ref|ZP_05351501.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 66

 Score = 33.5 bits (75), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R+  +LTQ+++  + G  +  I  LE GK   ++   I ++  +DTP+ +L 
Sbjct: 4  FTCNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63


>gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
 gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
          Length = 468

 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R +R+E  LTQ+ + +R G + S+++ +E  +  +    +I L HTL   L 
Sbjct: 3  RPLIGRTIRRLRQEQGLTQQALASRLGISASYLNLIEHDQRGVTAALLIKLGHTLQVDLA 62

Query: 79 KL 80
           L
Sbjct: 63 AL 64


>gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 115

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 32/53 (60%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +R E K++Q+E+  +   +QS++ + E+GK  I  + ++ LA+  +  +  LL
Sbjct: 11 LRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLL 63


>gi|240141978|ref|YP_002966488.1| putative transcriptional regulator [Methylobacterium extorquens
          AM1]
 gi|240011922|gb|ACS43147.1| Putative transcriptional regulator [Methylobacterium extorquens
          AM1]
          Length = 101

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R  R E   TQ ++    G  Q WISE+E GK+T  I
Sbjct: 13 IRAKRSERSWTQGDLARHVGTTQRWISEVENGKATAEI 50


>gi|222150597|ref|YP_002559750.1| hypothetical protein MCCL_0347 [Macrococcus caseolyticus
          JCSC5402]
 gi|222119719|dbj|BAH17054.1| conserved hypothetical protein [Macrococcus caseolyticus
          JCSC5402]
          Length = 167

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N R IRKE +LT K++   T  +  ++S+LET KS   +  + ++A  L+ 
Sbjct: 6  NIRKIRKERELTLKQVAELTDLSIPFLSQLETNKSDATMATIRLIADALEV 56


>gi|148252780|ref|YP_001237365.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp.
          BTAi1]
 gi|146404953|gb|ABQ33459.1| Putative HTH-type transcriptional regulator [Bradyrhizobium sp.
          BTAi1]
          Length = 75

 Score = 33.5 bits (75), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R IR++ ++TQ+++        +++  +E GK   ++  M  +A  L  PL 
Sbjct: 11 RAVLGRNVRKIRQQRRMTQEKLAFEAEIDLTYMGGIERGKRNPSLLVMARIAEALSVPLT 70

Query: 79 KLL 81
          KLL
Sbjct: 71 KLL 73


>gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          SK119]
 gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          subsp. hominis C80]
 gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          SK119]
 gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          subsp. hominis C80]
          Length = 179

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 32/49 (65%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +N+R++  LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T
Sbjct: 8  KNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGT 56


>gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC
          15579]
 gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC
          15579]
          Length = 220

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 22/28 (78%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTIN 62
          LTQK++  + G A+S+I+E+E+G+  IN
Sbjct: 17 LTQKQLAKKLGVAESFINEVESGRKIIN 44


>gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916]
 gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916]
          Length = 170

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +++R    L+  ++  +TG  QS IS+LE G   I+ D +  +A  +D P+
Sbjct: 7  LKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPI 58


>gi|75910458|ref|YP_324754.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704183|gb|ABA23859.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
           29413]
          Length = 531

 Score = 33.5 bits (75), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 28/44 (63%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           RK+  L+Q+++   TG +QSWI ++E G+    +++ ++L   L
Sbjct: 485 RKKLGLSQRDLAKLTGKSQSWIRDIENGRFQAKLEDQMVLRKAL 528


>gi|292670745|ref|ZP_06604171.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292647366|gb|EFF65338.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 128

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82
          RKE  LTQKE+  +   +   IS  E G  +TIN D++++L+     P+ +L+K
Sbjct: 11 RKENGLTQKELGFKINKSPQVISNWERGYTTTINQDDIVVLSGVFGIPVEELIK 64


>gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 114

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI       + +E  +TQ E    TG AQS IS+ +  K+  + D +++++  LD   ++
Sbjct: 1  MIISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKRKKTNPSADKIMVISDVLDVSPFE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLQ 63


>gi|293402548|ref|ZP_06646683.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304062|gb|EFE45316.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 100

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + RKE  +TQ++I  R G     +S+ ETGKS  +   M+ L   L   + +LL
Sbjct: 12 DCRKELNMTQRQIAERLGITNRAVSKWETGKSMPDASLMLELCEALHISINELL 65


>gi|91204486|emb|CAJ70986.1| similar to immunity repressor protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 151

 Score = 33.5 bits (75), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          I  +N R IR+   +TQ+E+  R+G  Q +I+ LE GK
Sbjct: 26 IVGSNVRMIRERLGITQEELALRSGLTQGYINFLENGK 63


>gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 200

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD  + +L+
Sbjct: 30 IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVSQLI 85


>gi|42526012|ref|NP_971110.1| DNA-binding protein, putative [Treponema denticola ATCC 35405]
 gi|41816062|gb|AAS10991.1| DNA-binding protein, putative [Treponema denticola ATCC 35405]
          Length = 72

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          RK A LTQ++   R G    ++ ELE GK T+ +D +
Sbjct: 12 RKSAGLTQEDFAIRAGLGLRFVRELEQGKETVRMDKV 48


>gi|37527293|ref|NP_930637.1| hypothetical protein plu3419 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786727|emb|CAE15793.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 97

 Score = 33.5 bits (75), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E  + +N  R  R E  +TQK +       QS+I+++E G+  +++   + +AH L  
Sbjct: 21 EYQLVINTLRKARIEKGITQKSLAQALDRPQSFIAKIENGERRLDVVEFVHIAHLLSV 78


>gi|328947050|ref|YP_004364387.1| hypothetical protein Tresu_0124 [Treponema succinifaciens DSM
          2489]
 gi|328447374|gb|AEB13090.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 106

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF+ N +  RK+A LTQ+++      + S+I ++E  +   + + +  +A  L+ P+ 
Sbjct: 4  RRIFIQNMKYYRKQAGLTQEKLAEAIDMSTSYIGDMEARERFPSAETIDKIAAALEIPVS 63

Query: 79 KLL 81
           L 
Sbjct: 64 LLF 66


>gi|300691138|ref|YP_003752133.1| HTH-type transcriptional regulator [Ralstonia solanacearum PSI07]
 gi|299078198|emb|CBJ50841.1| putative HTH-type transcriptional regulator [Ralstonia
          solanacearum PSI07]
          Length = 93

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R +R     +Q+ +    G  ++++S +E  +  +++ N+  +A  L+   W
Sbjct: 18 RGVLAFNVRLLRVGRGWSQERLALECGLDRTYVSAVERSRWNVSLSNIEAIAKALEVQPW 77

Query: 79 KLLKP 83
           LLKP
Sbjct: 78 ALLKP 82


>gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 272

 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N    RKE +LTQ+ + ++ G     +S+ ETG++  +I  +  L+  LD  + 
Sbjct: 2  RDMLAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61

Query: 79 KLL 81
          KL 
Sbjct: 62 KLF 64


>gi|86133152|ref|ZP_01051734.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
 gi|85820015|gb|EAQ41162.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
          Length = 494

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R+IF    + IR E  L+   +   +G ++S+++E+E GK     D +++L+ +L+ 
Sbjct: 9  RLIFGLKLKQIRTERNLSLFGLAKLSGLSKSYLNEIEKGKKYPKTDKILLLSESLEV 65


>gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 131

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +R E  L+Q++I N+   ++  IS  E+G +T ++ N++ LA  L+T L
Sbjct: 7  TQLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSL 60


>gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1]
 gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1]
          Length = 260

 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +RKE  LTQK++  +   +   +S+ E G S  N+  +I +A  LD  + +LL+
Sbjct: 23 LRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLR 76


>gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM
          16795]
 gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM
          16795]
          Length = 179

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 32/51 (62%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L
Sbjct: 8  KSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNL 58


>gi|152851|gb|AAA26568.1| C protein [Serratia marcescens]
          Length = 84

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R+ R    L+Q+++   +G  +++I  +E  +  + +  +IIL   L+T + KL
Sbjct: 14 ILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILRKALNTSVPKL 73

Query: 81 L 81
          L
Sbjct: 74 L 74


>gi|307132763|ref|YP_003884779.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937]
 gi|306530292|gb|ADN00223.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937]
          Length = 156

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           D   L+ A +  R        + RK   LTQK++  +TG  ++ +SE+E G+ T ++D
Sbjct: 63  DGITLAAASMASRESMGKTIASTRKACGLTQKQVAEQTGINKTTLSEIENGRFTGSLD 120


>gi|289449795|ref|YP_003474502.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|289184342|gb|ADC90767.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
          Length = 66

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          N    +RK+ K+TQ+E+ N  G  +  I+ +ETGK
Sbjct: 3  NTISQLRKQHKITQEELANEVGVTRQTITSIETGK 37


>gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26]
 gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932]
 gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55]
 gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34]
 gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79]
 gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196]
 gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291]
 gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58]
 gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196]
 gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291]
          Length = 169

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
 gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
          Length = 244

 Score = 33.5 bits (75), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 34/55 (61%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R +RK   LT +++ +  G +++ +SE E+G+S  + + +++LA  L T +  LL
Sbjct: 12 RELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYLL 66


>gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 169

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 77

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          RK+A +TQ E+  + G  +S+IS +ETGK+   +     +A  L 
Sbjct: 24 RKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68


>gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 104

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          IR++ KL+Q++     G  +  +S  E G S  NI+ +I+++     P+ ++LK
Sbjct: 18 IRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPVDEMLK 71


>gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM
          17241]
 gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM
          17241]
          Length = 184

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E K++ +++  RTG   S +S++E      +I+ + ++A  L+ P++K  
Sbjct: 14 RGEKKISLRQLAERTGLTASMLSQIERNLVNPSINTLKVIAAALEIPMYKFF 65


>gi|146280153|ref|YP_001170310.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558394|gb|ABP73005.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 82

 Score = 33.5 bits (75), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R   KL+QK++   TG AQS IS++E G  + ++D  + L   L   L
Sbjct: 19 LRARRTARKLSQKQLGEMTGTAQSTISDIENGVVSASLDVYLRLLEALGAEL 70


>gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630]
 gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42]
 gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 169

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|158320706|ref|YP_001513213.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158140905|gb|ABW19217.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 232

 Score = 33.5 bits (75), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +  R +AKLT+KE+  + G   ++I ++E+GK  +N
Sbjct: 8  IKEARMKAKLTEKELAKKCGLTANYIIQIESGKRVVN 44


>gi|299537927|ref|ZP_07051215.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298726655|gb|EFI67242.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 165

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +RK  K+ Q+E  N+ G +QS ++ +E GK TI    +  + HT +
Sbjct: 8  LRKTLKMNQQEFSNKIGISQSALTLMENGKRTIRDVYITQMCHTFN 53


>gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42]
          Length = 122

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 30/47 (63%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          LTQ+ + ++ G     +S +ETG S++++  ++ +A+ L+  + +LL
Sbjct: 21 LTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLNVSVDELL 67


>gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 183

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +I   N R +R+E KL+  E+   +G ++S ++++E G+    I  +  L++ +  P 
Sbjct: 6  LIVAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKVPF 63


>gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 223

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 31/48 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 12 RQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|37524226|ref|NP_927570.1| hypothetical protein plu0206 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36783649|emb|CAE12501.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 100

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R   +   ++ RK   LTQ+++  + G  +  IS +E GKS  N+D +   A  L
Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAAL 88


>gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis
          ATCC 903]
 gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis
          ATCC 903]
          Length = 291

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 14/62 (22%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    ++IRK+  ++Q+ +  + G ++  +++ ETG    +I+N+I +++  +  + +
Sbjct: 1  MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 175

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N  + +RKE KL+QKEI      ++  +S  E G+S I  +    LA      +  LL
Sbjct: 1  MNRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLL 59


>gi|253987632|ref|YP_003038988.1| phage n15 protein gp48 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779082|emb|CAQ82242.1| similar to protein gp48 from prophage n15 [Photorhabdus
          asymbiotica]
          Length = 99

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R   +   ++ RK   LTQ+++  + G  +  IS +E GKS  N+D +   A  L
Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAAL 88


>gi|212695608|ref|ZP_03303736.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677281|gb|EEB36888.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 68

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 11/43 (25%), Positives = 29/43 (67%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          + ++++  N+ + +RKE   +Q+++ +  G +++ IS +ETG+
Sbjct: 1  MDDKLVLKNHLKEVRKEKDYSQQQLADEVGVSRNTISSIETGQ 43


>gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753]
 gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753]
          Length = 169

 Score = 33.5 bits (75), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  LL
Sbjct: 5  NIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLL 61


>gi|160916243|ref|ZP_02078450.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991]
 gi|158431967|gb|EDP10256.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991]
          Length = 94

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          +LSD  +  R  F  N +  RK+   TQ ++    G  Q++ISE+E GK  + +  +  L
Sbjct: 24 NLSDMRIETR--FGRNVQMYRKQRHYTQFQLAELCGLNQNYISEIENGKRNVTLRVLNDL 81

Query: 70 AHTLDTPLWKLL 81
          A  L   + +L+
Sbjct: 82 AEALGVEVKELV 93


>gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 221

 Score = 33.5 bits (75), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R +RK  +LT   +   TG +   +S++E G  + +++ + +LA  L  PL +L  
Sbjct: 42 RELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPLMQLFS 97


Searching..................................................done


Results from round 2




>gi|254781147|ref|YP_003065560.1| transcriptional regulator [Candidatus Liberibacter asiaticus str.
          psy62]
 gi|254040824|gb|ACT57620.1| transcriptional regulator [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 83

 Score =  118 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST
Sbjct: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          INIDNMIILAHTLDTPLWKLLKP
Sbjct: 61 INIDNMIILAHTLDTPLWKLLKP 83


>gi|315122539|ref|YP_004063028.1| transcriptional regulator [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495941|gb|ADR52540.1| transcriptional regulator [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 83

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/83 (90%), Positives = 80/83 (96%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRR++DE HLS+ ILRERMIFVNNFRN RKEAK+TQKEIRNRTGFAQSWISELETGKST
Sbjct: 1  MPRRRKDESHLSNTILRERMIFVNNFRNTRKEAKITQKEIRNRTGFAQSWISELETGKST 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          INIDNMIILAHTL+TPLWKLLKP
Sbjct: 61 INIDNMIILAHTLNTPLWKLLKP 83


>gi|325917597|ref|ZP_08179796.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC
          35937]
 gi|325536194|gb|EGD07991.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC
          35937]
          Length = 85

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 2/85 (2%)

Query: 1  MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          MP R R  D       +  ER+IF  NFR  RK AKL+Q+++R+RTG  +SWIS +ETGK
Sbjct: 1  MPGRPRAADSHQDPKPVPVERLIFARNFRQARKAAKLSQRDVRDRTGLTRSWISNIETGK 60

Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83
          S  N+DNM +LA  +  PLWKLL P
Sbjct: 61 SPPNLDNMAMLAKCVGVPLWKLLVP 85


>gi|325919535|ref|ZP_08181552.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
 gi|325549984|gb|EGD20821.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
          Length = 85

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 1  MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          MP R R  D       +  ER+IF   FR  RK AKL+Q+ IR+RTGF Q+WIS +ETGK
Sbjct: 1  MPGRPRAADSHQDPKPVPVERLIFARKFRQARKAAKLSQRGIRDRTGFTQAWISAVETGK 60

Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83
          S  N+D+M +LA  +  PLWKLL P
Sbjct: 61 SAPNLDSMAVLAKCVGVPLWKLLVP 85


>gi|10956712|ref|NP_061657.1| transcriptional regulator [Xylella fastidiosa 9a5c]
 gi|9112239|gb|AAF85570.1|AE003851_1 transcriptional regulator [Xylella fastidiosa 9a5c]
          Length = 86

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 57/83 (68%), Gaps = 1/83 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP +++    +  A+  ER+IF  NFRN R  AKL+Q+EI  +TG  Q+WIS +E G+ST
Sbjct: 3  MPHKQKTVNKV-KAVEPERLIFGRNFRNARNMAKLSQREIAEKTGLTQNWISMVENGRST 61

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          I+IDNM  LA  ++ PLWKLL P
Sbjct: 62 ISIDNMAKLAKCVNVPLWKLLIP 84


>gi|114326578|ref|YP_743737.1| XRE family transcriptional regulator [Nitrosomonas eutropha C91]
 gi|114309517|gb|ABI60759.1| transcriptional regulator, XRE family [Nitrosomonas eutropha C91]
          Length = 85

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 46/76 (60%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
               +     R IF  NFR+ R+ A+LTQ +I   TG  + +IS++E GK +I++D M 
Sbjct: 4  SRDTEEISPEARFIFGRNFRHARRAAELTQCDITRITGVMRGYISKVECGKVSISVDKME 63

Query: 68 ILAHTLDTPLWKLLKP 83
          +LA+ +  PLWKLL P
Sbjct: 64 VLANAVKVPLWKLLTP 79


>gi|312115518|ref|YP_004013114.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220647|gb|ADP72015.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 101

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 2   PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
           P+RKR  P L+         ER IF  N R  R +A L+Q+E+   TG AQ+ ISELE  
Sbjct: 16  PKRKRALPVLAKKRAPDSQPEREIFARNLRKSRIDAGLSQRELAAVTGIAQAHISELENA 75

Query: 58  KSTINIDNMIILAHTLDTPLWKLLKP 83
              + ID M+ LA  +  PL+++ +P
Sbjct: 76  MHNVCIDTMVKLAQAMRKPLFQMFQP 101


>gi|312113854|ref|YP_004011450.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218983|gb|ADP70351.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 101

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 2   PRRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
           P+RKR  P L+         ER IF  N R  R +A L+Q+E+   TG AQ+ ISELE  
Sbjct: 16  PKRKRALPVLAKKRAPDSQPEREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENA 75

Query: 58  KSTINIDNMIILAHTLDTPLWKLLKP 83
              + ID M+ LA  +  PL+++ +P
Sbjct: 76  MHNVCIDTMVKLAQAVKKPLFQMFQP 101


>gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
 gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
          Length = 78

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +D  H  D  LR++  + +  R  R+   ++Q+ +  + G  +++I ++E G+  I+IDN
Sbjct: 3  KDSKHSDDVSLRQK--YGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGERNISIDN 60

Query: 66 MIILAHTLDTPLWKLLKP 83
          +  LA  +   LW++L+P
Sbjct: 61 LERLADAVGEQLWEMLRP 78


>gi|312114516|ref|YP_004012112.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219645|gb|ADP71013.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 101

 Score = 91.2 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 3   RRKRDEPHLSDA----ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           +RKR  P L+         ER IF  N R  R +A L+Q+E+   TG AQ+ ISELE   
Sbjct: 17  KRKRALPVLAKKRAPDSQPEREIFARNLRRARIDASLSQRELAAVTGIAQAHISELENAM 76

Query: 59  STINIDNMIILAHTLDTPLWKLLKP 83
             + ID M+ LA  +  PL+++ +P
Sbjct: 77  HNVCIDTMVKLAQAVKKPLFQMFQP 101


>gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1]
 gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1]
          Length = 185

 Score = 91.2 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 37  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96

Query: 79  KLLKP 83
           +LL P
Sbjct: 97  QLLAP 101


>gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B]
 gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1]
          Length = 185

 Score = 90.8 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 37  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 96

Query: 79  KLLKP 83
           +LL P
Sbjct: 97  QLLAP 101


>gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520]
          Length = 154

 Score = 90.1 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 QLLAP 70


>gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509]
          Length = 154

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    L+Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 QLLAP 70


>gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 154

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 QLLAP 70


>gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55]
 gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55]
          Length = 154

 Score = 89.3 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4024]
          Length = 152

 Score = 88.5 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 4  RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 63

Query: 79 KLL 81
          +LL
Sbjct: 64 RLL 66


>gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933]
 gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai]
 gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC508]
 gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4115]
 gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str.
          TW14588]
 gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str.
          TW14359]
 gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933]
 gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str.
          Sakai]
 gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4196]
 gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4113]
 gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4501]
 gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC508]
 gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC4115]
 gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str.
          TW14588]
 gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359]
 gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str.
          EC1212]
 gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str.
          1125]
 gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str.
          1044]
          Length = 154

 Score = 88.1 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 6  RKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 RLL 68


>gi|34496512|ref|NP_900727.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34102366|gb|AAQ58732.1| probable transcriptional regulator [Chromobacterium violaceum
          ATCC 12472]
          Length = 87

 Score = 88.1 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L  R +F  N R  R+   ++Q+ +  + G +++++SE+E G+  ++IDNM  LA  L  
Sbjct: 8  LTARAVFARNLRIARRLHDVSQEALALQAGMSRTYVSEIERGERNVSIDNMGALADALGV 67

Query: 76 PLWKLLKP 83
           L  L+ P
Sbjct: 68 ALRDLVDP 75


>gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703]
          Length = 178

 Score = 87.7 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L+   W
Sbjct: 30 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALNVEPW 89

Query: 79 KLL 81
          +  
Sbjct: 90 QFF 92


>gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473]
 gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473]
          Length = 166

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 18 RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 77

Query: 79 KLL 81
          +LL
Sbjct: 78 QLL 80


>gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3]
          Length = 153

 Score = 87.4 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F    + +R    ++Q+   +  GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RILFGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEALSVEPW 65

Query: 79 KLLK 82
          +LL 
Sbjct: 66 QLLT 69


>gi|291296947|ref|YP_003508345.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290471906|gb|ADD29325.1| transcriptional regulator, XRE family [Meiothermus ruber DSM
          1279]
          Length = 230

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 39/65 (60%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R +R +  L+Q+++ +  G  ++++SE+E GK  +++DN+  LA+ L     
Sbjct: 5  RTLLAQNLRTLRYQRGLSQEDLADLAGLHRTYVSEVERGKRNLSLDNLERLANALQVEAA 64

Query: 79 KLLKP 83
          KL+ P
Sbjct: 65 KLVSP 69


>gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 152

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    + +R    ++Q+   +R GFA S++S +E G S  ++D + +LA+ L    W
Sbjct: 4  RKLFGQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEPW 63

Query: 79 KLL 81
          +LL
Sbjct: 64 QLL 66


>gi|32442173|gb|AAP82048.1| putative mating pair formation protein [Stenotrophomonas
          maltophilia]
          Length = 98

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 43/79 (54%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          ++         I   R  F  NFR  R  A LTQK+I  + G  Q ++SE+E G S I++
Sbjct: 20 KRLPASVDESEIPEMRKKFAKNFRAARIRAGLTQKDICEKAGLTQPYLSEVERGLSNISL 79

Query: 64 DNMIILAHTLDTPLWKLLK 82
          DNM +LA  +  PLW LL+
Sbjct: 80 DNMEVLAGLVHKPLWVLLR 98


>gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family
          [Sinorhizobium fredii NGR234]
 gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
          y4dJ
 gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a
 gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family
          [Sinorhizobium fredii NGR234]
          Length = 77

 Score = 86.6 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELVTP 68


>gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B]
          Length = 150

 Score = 85.8 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA+ L    W
Sbjct: 2  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPW 61

Query: 79 KLL 81
          +LL
Sbjct: 62 QLL 64


>gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909]
 gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909]
          Length = 154

 Score = 85.4 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L+   W
Sbjct: 6  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 RLL 68


>gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium
          caulinodans ORS 571]
 gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium
          caulinodans ORS 571]
          Length = 72

 Score = 85.4 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ++++ R+GF+Q +IS LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELVRP 68


>gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 154

 Score = 85.4 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L+   W
Sbjct: 6  RIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGALNVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 RLL 68


>gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family
          [Ketogulonicigenium vulgare Y25]
 gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family
          [Ketogulonicigenium vulgare Y25]
          Length = 73

 Score = 85.4 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+   LTQ+++  R+GF+Q +IS LE G+    I  +  LA  L     
Sbjct: 4  RRLVGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELITP 68


>gi|222087821|ref|YP_002546359.1| hypothetical protein Arad_4804 [Agrobacterium radiobacter K84]
 gi|221725269|gb|ACM28425.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 72

 Score = 85.4 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+KP
Sbjct: 64 ELVKP 68


>gi|167855653|ref|ZP_02478411.1| probable transcriptional regulator [Haemophilus parasuis 29755]
 gi|219871715|ref|YP_002476090.1| XRE family transcriptional regulator [Haemophilus parasuis
          SH0165]
 gi|167853225|gb|EDS24481.1| probable transcriptional regulator [Haemophilus parasuis 29755]
 gi|219691919|gb|ACL33142.1| XRE family transcriptional regulator [Haemophilus parasuis
          SH0165]
          Length = 86

 Score = 85.0 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R  F NN R IR+   ++Q+ +      ++++IS++E GK  I+ID M  +A  L
Sbjct: 7  TSHPIRHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRAISIDAMGKIADAL 66

Query: 74 DTPLWKLLK 82
          D  L  LLK
Sbjct: 67 DVNLVDLLK 75


>gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 72

 Score = 85.0 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELVSP 68


>gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13]
 gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13]
 gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13]
          Length = 75

 Score = 85.0 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 63

Query: 79 KLLKP 83
          +L KP
Sbjct: 64 ELFKP 68


>gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
          Length = 73

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+GF+Q ++S LE G+    +  +  LA  L     
Sbjct: 2  RKLVGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHV 61

Query: 79 KLLKP 83
          +L KP
Sbjct: 62 ELFKP 66


>gi|27802476|gb|AAO21114.1| unknown [Rhizobium leguminosarum bv. viciae]
          Length = 72

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  LA  LD    
Sbjct: 4  RKLVGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVSHV 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELVRP 68


>gi|329120702|ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
 gi|327460499|gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200]
          Length = 82

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RMIF  N R IR+  +++Q+E+      ++ +I E+E G   + ID M  ++  L+ PL 
Sbjct: 12 RMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMGRISDALEVPLD 71

Query: 79 KLL 81
          KLL
Sbjct: 72 KLL 74


>gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89]
 gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89]
          Length = 154

 Score = 83.5 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 72

 Score = 83.1 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+E+  R+GF+Q ++S LE G+    +  +  L+  L     
Sbjct: 4  RKLVGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHV 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELVQP 68


>gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50]
 gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50]
          Length = 118

 Score = 83.1 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + +    ++ +F    R IRK+  +TQ E+  +TG A  +IS +ETGK+ +++D  + L 
Sbjct: 1  MDNLAGIDKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLV 60

Query: 71 HTLDTPLWKLLK 82
          +  D P    L+
Sbjct: 61 NAFDVPADYYLQ 72


>gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli
          UM146]
          Length = 154

 Score = 83.1 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R    ++Q+   +R GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASALSVEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|322513230|ref|ZP_08066356.1| DNA-binding protein [Actinobacillus ureae ATCC 25976]
 gi|322121006|gb|EFX92847.1| DNA-binding protein [Actinobacillus ureae ATCC 25976]
          Length = 86

 Score = 82.7 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R  F NN R IR+   ++Q+ +      ++++IS++E GK   +ID M  +A  L+  
Sbjct: 10 PIRHTFANNLRKIRRLKDISQEALAFDAELSRAYISDVERGKRATSIDAMGKIADALNVS 69

Query: 77 LWKLLK 82
          L  LLK
Sbjct: 70 LIDLLK 75


>gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter
          autotrophicus Py2]
          Length = 72

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+GF+Q +IS LE G+    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHE 63

Query: 79 KLLK 82
          +L++
Sbjct: 64 ELVR 67


>gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280]
 gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280]
          Length = 154

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    +  R    L+Q+   +R GFA+S++S +E G S  ++D + +LA  L    W
Sbjct: 6  RYLFGQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPW 65

Query: 79 KLL 81
          +LL
Sbjct: 66 QLL 68


>gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 76

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R++  LTQ+++  R+GF+Q ++S LE G     +  +  L+  L     
Sbjct: 4  RKLVGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|13474794|ref|NP_106364.1| transcriptional regulatory protein [Mesorhizobium loti
          MAFF303099]
 gi|14025550|dbj|BAB52150.1| transcriptional regulatory protein [Mesorhizobium loti
          MAFF303099]
          Length = 75

 Score = 81.2 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+E  LTQ+++  R+G++Q ++S LE G+    +  +  L+  L     
Sbjct: 7  RQLVGTNFARLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHV 66

Query: 79 KLLKP 83
          +L+KP
Sbjct: 67 ELVKP 71


>gi|300309363|ref|YP_003773455.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072148|gb|ADJ61547.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 89

 Score = 81.2 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 42/67 (62%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R+IF  N R +R+  +++Q+E+  R   +++++SE+E G+  I++DNM  LA  L+ 
Sbjct: 8  PSARLIFGQNVRRVRRLKEMSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEM 67

Query: 76 PLWKLLK 82
           L  LL+
Sbjct: 68 ELPDLLR 74


>gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum
          lavamentivorans DS-1]
 gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum
          lavamentivorans DS-1]
          Length = 72

 Score = 81.2 bits (199), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R IR +  LTQ++    +GF+Q +IS LE G+    +  +  LA  L     
Sbjct: 4  RKTVGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHL 63

Query: 79 KLLKP 83
           LL+P
Sbjct: 64 DLLRP 68


>gi|326385864|ref|ZP_08207491.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209653|gb|EGD60443.1| transcriptional regulator, XRE family [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 76

 Score = 80.8 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R++  LTQ+++  R+GF+Q ++S LE G+    +  +  L+  L     
Sbjct: 4  RKLVGRNFARLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|296314733|ref|ZP_06864674.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC
          43768]
 gi|296838467|gb|EFH22405.1| transcriptional regulator, PvuIIC [Neisseria polysaccharea ATCC
          43768]
          Length = 81

 Score = 80.4 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                 R+IF  N R +R+  +L+Q+E+      ++++ISE+E G  +++ID M  +A 
Sbjct: 4  PTTPNPYRLIFAQNMRQVRRLKELSQEELAFSARVSKTYISEIERGSRSVSIDVMGQIAD 63

Query: 72 TLDTPLWKLLK 82
           L  PL +L++
Sbjct: 64 ALGMPLEELVR 74


>gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 72

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +R+   LTQ+++  R+G +Q ++S LE G+    I  +  LA  LD    
Sbjct: 4  RKLVGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVSHV 63

Query: 79 KLLKP 83
          +L+ P
Sbjct: 64 ELVLP 68


>gi|332296775|ref|YP_004438697.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332179878|gb|AEE15566.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 104

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  N + IR   KL Q E+  + G +  ++S+LETG+S+ + D ++ LA  L    ++
Sbjct: 5  ETYAANIKKIRIAKKLNQAELAEKLGLSVKYVSDLETGRSSGSFDTLVNLADALGVEPYE 64

Query: 80 LLKP 83
          LL P
Sbjct: 65 LLLP 68


>gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp.
          PCC 8106]
 gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp.
          PCC 8106]
          Length = 72

 Score = 78.5 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 38/64 (59%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +N R +R+   L+Q+++  +    +++I  +E G+  +++DN++ +AH L  P  
Sbjct: 6  RKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHALGVPAS 65

Query: 79 KLLK 82
          KLL+
Sbjct: 66 KLLE 69


>gi|116073|sp|P23939|CEBA_BACAM RecName: Full=BamHI control element
 gi|1333709|emb|CAA39000.1| BamH I control element [Bacillus amyloliquefaciens]
          Length = 102

 Score = 77.3 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R++F    R IR     ++Q+++       +++IS++E G   +++DN+  ++  L    
Sbjct: 27 RLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKALGVQP 86

Query: 78 WKLL 81
            LL
Sbjct: 87 KDLL 90


>gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 76

 Score = 77.3 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                 +  F    R +R    ++Q+   +R GFA++++S +ETG +  +I+ + +LA 
Sbjct: 4  PPPSPALQHQFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLAD 63

Query: 72 TLDTPLWKLLK 82
           L   +  L +
Sbjct: 64 ALGVSISALFE 74


>gi|240950283|ref|ZP_04754558.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
 gi|240295185|gb|EER45993.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
          Length = 88

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +   R R IF  N R IR+   ++Q+ +      ++++I E+E G+ +++ID M  +A T
Sbjct: 7  NTAHRLRYIFAKNMRRIRRWKDISQEALALNANVSRTYIGEIERGERSVSIDVMGKIADT 66

Query: 73 LDTPLWKLLK 82
          L+  L +L+K
Sbjct: 67 LEVELSELVK 76


>gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
 gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
          Length = 224

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 39/64 (60%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    ++ R E  ++Q+E+ +R G  ++++S++E G   +++ ++  LAH L   +W
Sbjct: 7  KSLFGTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGMRNVSLISIEKLAHALGLSVW 66

Query: 79 KLLK 82
          +L +
Sbjct: 67 RLFE 70


>gi|115526032|ref|YP_782943.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115519979|gb|ABJ07963.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 84

 Score = 76.6 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +RKE   TQ+     +GF Q ++S LE GK    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLIQP 68


>gi|225016335|ref|ZP_03705527.1| hypothetical protein CLOSTMETH_00238 [Clostridium methylpentosum
          DSM 5476]
 gi|224950878|gb|EEG32087.1| hypothetical protein CLOSTMETH_00238 [Clostridium methylpentosum
          DSM 5476]
          Length = 81

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 38/63 (60%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF  N +  RK+   +Q+++   +G  +++IS +E G+ +I+++N+  +A  L+   +
Sbjct: 17 KKIFGENIKKYRKQKSFSQEKLAELSGLHRTYISAVECGRRSISLNNIEKIADALEVETY 76

Query: 79 KLL 81
          +L 
Sbjct: 77 QLF 79


>gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
 gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
          Length = 77

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N   IR E  LTQ++  + +GF+Q ++S LE GK    I  +  LA  L+    
Sbjct: 4  RRLVGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|90425389|ref|YP_533759.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisB18]
 gi|90107403|gb|ABD89440.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisB18]
          Length = 84

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   NF  +RKE   TQ+     +GF Q ++S LE GK    +  +  LA  L     
Sbjct: 4  RKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLIQP 68


>gi|302880116|ref|YP_003848680.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302582905|gb|ADL56916.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 73

 Score = 76.2 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             +  R+ F  N R  R   + +Q+++   +G  ++++  +E G+  I+IDNM  LA+ 
Sbjct: 4  KQKISARLRFSKNLREARLRREWSQEDLAEESGLHRTYVGSVERGERNISIDNMECLANA 63

Query: 73 LDTPLWKLLK 82
          +   L  LLK
Sbjct: 64 VGVELIDLLK 73


>gi|328554991|gb|AEB25483.1| transcription regulator protein [Bacillus amyloliquefaciens
          TA208]
 gi|328913346|gb|AEB64942.1| BamHI control element [Bacillus amyloliquefaciens LL3]
          Length = 81

 Score = 75.8 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R++F    R IR     ++Q+++       +++IS++E G   +++DN+  ++  L    
Sbjct: 6  RLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKALGVQP 65

Query: 78 WKLL 81
            LL
Sbjct: 66 KDLL 69


>gi|260461784|ref|ZP_05810030.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|319785325|ref|YP_004144801.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|259032425|gb|EEW33690.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|317171213|gb|ADV14751.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 72

 Score = 75.4 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N + IR+  +LTQ+++ + +GF+Q +IS LE G+    I  +  LA  L     
Sbjct: 4  RKLIGRNVQRIRQRKRLTQEQLADISGFSQQYISGLEKGRRNPTIITIYELALALGVSHM 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLVRP 68


>gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM
          5427]
 gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 159

 Score = 75.4 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          ++    + +RKE K++QKE+   +G + S+I ++E+GK    +++ +  +A  LDTP++ 
Sbjct: 1  MYGEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYH 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 68

 Score = 75.4 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +R+E  LTQ+ + +R+G +Q ++S LE GK    I  +  ++  L     +L
Sbjct: 1  MVGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLEL 60

Query: 81 LKP 83
          L+P
Sbjct: 61 LRP 63


>gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60]
 gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60]
          Length = 70

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RK   L+Q+++   TGF +++I  +E G+    + N+ I A+  D  L +L 
Sbjct: 9  FGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAFDLSLSELF 68


>gi|153009785|ref|YP_001371000.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151561673|gb|ABS15171.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 72

 Score = 74.6 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I  +N   IR E  LTQ+++   +GF+Q ++S LE G+    I  +  L+  L+T  +
Sbjct: 2  RKIVGDNLTWIRIEKGLTQEQVAEGSGFSQQYLSSLERGQYNPTIITIYELSLALETTYF 61

Query: 79 KLLKP 83
           L+ P
Sbjct: 62 SLILP 66


>gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 73

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L ++  F    + +R     TQ+E+   TG   ++I  +E G+  + +DN++ +A  L 
Sbjct: 2  SLTDKQRFGRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGERNLGLDNLLKIARALG 61

Query: 75 TPLWKLL 81
           P   LL
Sbjct: 62 EPPAALL 68


>gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
 gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica
          serovar Paratyphi A]
 gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica]
 gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str. ATCC
          9150]
 gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella
          enterica subsp. enterica serovar Paratyphi A str.
          AKU_12601]
          Length = 78

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R R+IF +N R +R+   L+Q+ + +  G  +++I  +E  +  I+IDN+  +A  L   
Sbjct: 9  RARVIFAHNIRKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDRIASALGVS 68

Query: 77 LWKLLK 82
             LL+
Sbjct: 69 PSSLLE 74


>gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
 gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae
          ATCC 43715]
          Length = 164

 Score = 73.9 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R +R     +Q++     G  +++++ +E GK  I+I+N+  +A+ L+  L 
Sbjct: 3  KELVGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEITLS 62

Query: 79 KLL 81
          +L 
Sbjct: 63 ELF 65


>gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 231

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F    + +R  + ++Q+ +  R G  +S+IS +E G+  ++I N+  +A  L   + 
Sbjct: 4  RIEFGQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGERNVSIINIEKIASALQIGVA 63

Query: 79 KLL 81
           L 
Sbjct: 64 YLF 66


>gi|61680543|pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction-
          Modification Controller Protein C.Ahdi From Aeromonas
          Hydrophila
 gi|61680544|pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction-
          Modification Controller Protein C.Ahdi From Aeromonas
          Hydrophila
 gi|32263455|gb|AAP78483.1| C.AhdI [Aeromonas hydrophila]
          Length = 74

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
            H   A L +   F    R +R    L+Q+ +   +G  +S++  +E G+  +++ N++
Sbjct: 3  SHHDHYADLVK---FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNIL 59

Query: 68 ILAHTLDTPLWKLL 81
           LA  LD    +L 
Sbjct: 60 KLATALDIEPRELF 73


>gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS]
 gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS]
          Length = 72

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    RN+RK+A ++Q+E+ +R G  ++++  +E G+   ++ N+  ++  L  P+  L 
Sbjct: 11 FGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISKALKVPVSDLF 70

Query: 82 K 82
          K
Sbjct: 71 K 71


>gi|189459599|ref|ZP_03008384.1| hypothetical protein BACCOP_00225 [Bacteroides coprocola DSM 17136]
 gi|189433681|gb|EDV02666.1| hypothetical protein BACCOP_00225 [Bacteroides coprocola DSM 17136]
          Length = 108

 Score = 72.7 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            IF  N +  RKE  L+Q+++    G  +++I  +E  +  I + N+  +A  L+  L K
Sbjct: 43  EIFGRNVQKYRKEQHLSQEKLAEYAGLHRTYIGMIERAEKNITLVNIEKIAKALNINLTK 102

Query: 80  LLK 82
           LL+
Sbjct: 103 LLE 105


>gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681]
 gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus
          polymyxa E681]
          Length = 112

 Score = 72.7 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +RKE  L+Q+ +  + GF  S+I ++E G+  +++ N+  +A+ LD  L +
Sbjct: 8  KLVGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAKIANALDVNLIQ 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681]
 gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus
          polymyxa E681]
          Length = 114

 Score = 72.7 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R +RK    TQ+++    G   S+I  +E G   I+++ +  +   L+ P ++L 
Sbjct: 7  VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALNVPAFELF 66

Query: 82 K 82
          +
Sbjct: 67 Q 67


>gi|148263207|ref|YP_001229913.1| helix-turn-helix domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146396707|gb|ABQ25340.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4]
          Length = 77

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           A    R I   N RN R +   +Q+E+  + G  +++I  +E G+  + +  + +LA T
Sbjct: 3  KASENIRAILAENIRNFRHKKNFSQEELAEKCGLHRTYIGSVERGERNVTLSTLEVLAST 62

Query: 73 LDTPLWKLL 81
          L   + +LL
Sbjct: 63 LGVSVPELL 71


>gi|307243674|ref|ZP_07525814.1| transcriptional regulator, PvuIIC family protein
          [Peptostreptococcus stomatis DSM 17678]
 gi|306492883|gb|EFM64896.1| transcriptional regulator, PvuIIC family protein
          [Peptostreptococcus stomatis DSM 17678]
          Length = 68

 Score = 72.7 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N +  R E  L+Q+    ++G  +++IS LE  K +I +DN+  +A  L+   + 
Sbjct: 5  EVFAKNLKKYRNEMGLSQEAFAEKSGLHRTYISALECKKRSIALDNVQKIADALEIEPYL 64

Query: 80 LLK 82
          L K
Sbjct: 65 LFK 67


>gi|325527286|gb|EGD04653.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          TJI49]
          Length = 84

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
             L       + I     R  R+E  L+Q++     G  ++++  +E G+  + +  + 
Sbjct: 4  TKSLRKPSPPLKAILATRIRVYRQEHGLSQEDFAELCGIHRTYVGSVERGERNVTLSTLE 63

Query: 68 ILAHTLDTPLWKLLK 82
          + A  +  P+ +LL 
Sbjct: 64 VFASVMGIPVPELLT 78


>gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 114

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  R +RK    TQ+++    G   S+I  +E G   I+++ +  +   L  P ++
Sbjct: 5  ESVGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFE 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFQ 67


>gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 91

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N   +R+  KLTQ+E+  R+GF+Q ++S++E G     I  +  +A  L     
Sbjct: 4  RKLVGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVSHV 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 ALVEP 68


>gi|19908850|gb|AAM03020.1|AF472611_1 regulatory protein C.BcnI [Brevibacillus centrosporus]
          Length = 74

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R IR++  LTQ+++    G  +++IS LE G+ +I+++N+  +A  LD  +++L 
Sbjct: 8  FGRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGERSISLNNIEKIARALDVEIYQLF 67


>gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
          Length = 383

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN +NIRK   +TQ +     G ++S+I +LE  +S  +I  +  +A  LD P+  L+
Sbjct: 130 GNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 188


>gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410]
 gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68]
 gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium]
 gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410]
 gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68]
          Length = 460

 Score = 72.3 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN +NIRK   +TQ +     G ++S+I +LE  +S  +I  +  +A  LD P+  L+
Sbjct: 207 GNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIVALI 265


>gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937]
 gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937]
          Length = 89

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +A L+Q+   ++ G  +++IS +E G     ++ + ++A  L+  L  L 
Sbjct: 28 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 87


>gi|268611010|ref|ZP_06144737.1| transcriptional regulator, XRE family protein [Ruminococcus
          flavefaciens FD-1]
          Length = 69

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N R  R   K++Q++     G  +++IS++E  + +I+++N+  +A  L+   + 
Sbjct: 5  KVFGTNVRKYRTIKKISQEKFAELCGLHRTYISDIECFRRSISLENIQKIADALEIETYL 64

Query: 80 LLK 82
          L K
Sbjct: 65 LFK 67


>gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 77

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +A L+Q+   ++ G  +++IS +E G     ++ + ++A  L+  L  L 
Sbjct: 16 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 75


>gi|260222943|emb|CBA33015.1| hypothetical protein Csp_B16920 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 100

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 40/75 (53%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D   ++   +  + I     + +R+EA+L+Q+ +  R G  ++++S +E+G +   +  +
Sbjct: 23 DTASVTKNKINYKRIVGQRIKGLRQEAELSQEILSERCGIYRTYLSRIESGSANPTLLVL 82

Query: 67 IILAHTLDTPLWKLL 81
          + LA +L     +LL
Sbjct: 83 VALADSLGVQPAELL 97


>gi|119385131|ref|YP_916187.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119374898|gb|ABL70491.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 75

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R I   N R +R E   +Q+ + +  G  ++++S +E  +  I+IDN+  +A   
Sbjct: 5  PKSPLRDIVARNMRRLRAERGWSQEYLAHECGLNRTYLSAVERSEQNISIDNLYRVAQGF 64

Query: 74 DTPLWKLLK 82
              W LLK
Sbjct: 65 GVESWTLLK 73


>gi|116331369|ref|YP_801087.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125058|gb|ABJ76329.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 114

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +    ER  F N  R  R E  LTQ ++  R G  QS+IS++E+GK  + I++ I L   
Sbjct: 41  EISDEERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCEL 100

Query: 73  LDTPL 77
            + P 
Sbjct: 101 YNKPP 105


>gi|116327819|ref|YP_797539.1| transcriptional regulator [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120563|gb|ABJ78606.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 114

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +    ER  F N  R  R E  LTQ ++  R G  QS+IS++E+GK  + I++ I L   
Sbjct: 41  EISDEERKSFFNQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCEL 100

Query: 73  LDTPL 77
            + P 
Sbjct: 101 YNKPP 105


>gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction-
          Modification System
 gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus]
          Length = 77

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + IR +  ++Q+E+ +  G  +++ISE+E G   I++ N+  +   LD P  
Sbjct: 8  KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPAS 67

Query: 79 KLLK 82
             +
Sbjct: 68 TFFR 71


>gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 71

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++   + +R  F    R +RK+A+++Q+E+  R G  ++++  +E G+   ++ N+  +A
Sbjct: 1  MTKKTIEQR--FGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIA 58

Query: 71 HTLDTPLWKLL 81
            L+ P+  L 
Sbjct: 59 KALEVPISDLF 69


>gi|308229519|gb|ADO24172.1| C.AciIP [Arthrobacter citreus]
          Length = 75

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 37/64 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N +  R +   +Q+++ + +   +++IS +E  +  I ++N   +A+ L+ PL+K
Sbjct: 5  KLFAKNIKIYRTKNGYSQEKLADLSQLHRTYISSVERSQRNITLENAEKIANALNIPLYK 64

Query: 80 LLKP 83
          LL P
Sbjct: 65 LLLP 68


>gi|261819794|ref|YP_003257900.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261603807|gb|ACX86293.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 78

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R R+IF +N + +R+   L+Q+ + +  G  +++I  +E  +  I+IDN+  +A  L   
Sbjct: 9  RARVIFSHNIKKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDRIASALCVS 68

Query: 77 LWKLLK 82
             LL+
Sbjct: 69 PSYLLE 74


>gi|300718357|ref|YP_003743160.1| transcriptional regulator, XRE family protein [Erwinia billingiae
          Eb661]
 gi|299064193|emb|CAX61313.1| Transcriptional regulator, XRE family protein [Erwinia billingiae
          Eb661]
          Length = 72

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 37/70 (52%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + +   +++F    + +R +A L+Q+   ++ G  ++++S +E G     ++ + ILA  
Sbjct: 2  EKLNTTKVLFGKRVKQLRLQAGLSQEAFAHKCGLDRTYVSGIERGLRNPTLEVIAILAKG 61

Query: 73 LDTPLWKLLK 82
          L   L  L++
Sbjct: 62 LGIELKNLIE 71


>gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 72

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +A L+Q+   ++ G  +++IS +E G     ++ + ++A  L+  L  L 
Sbjct: 11 FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADGLEIQLQSLF 70


>gi|237802182|ref|ZP_04590643.1| transcriptional regulator, XRE family protein [Pseudomonas
          syringae pv. oryzae str. 1_6]
 gi|331025039|gb|EGI05095.1| transcriptional regulator, XRE family protein [Pseudomonas
          syringae pv. oryzae str. 1_6]
          Length = 160

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--- 75
          R  F    R +R  + ++Q+   +    A+S++S +E G +  ++D + +LA  L     
Sbjct: 6  RKRFGLRVRELRIASGMSQEAFADHASIARSYMSRIERGGANPSLDAIQVLAEALGVDAG 65

Query: 76 PLWKLLKP 83
           L+++++P
Sbjct: 66 ALFEIVEP 73


>gi|188991259|ref|YP_001903269.1| putative regulatory protein. [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167733019|emb|CAP51217.1| putative regulatory protein [Xanthomonas campestris pv.
          campestris]
          Length = 91

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  +   P  +      R++F      +RK   L+Q+ +   +G A+S++  +E G+  
Sbjct: 1  MPPHRSHMPEKAMPTDP-RVLFGLRLAEVRKAKGLSQERLALESGLARSYLGGVERGQRN 59

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          I + N+  LA  L      LL+P
Sbjct: 60 IALLNIYRLAEALGVRPTSLLEP 82


>gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
 gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
          Length = 72

 Score = 70.8 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++RK+A ++Q+E+ +R G  ++++  +E G+   ++ N+  ++  L  P+  L 
Sbjct: 11 FGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIYAISRALKVPVSDLF 70

Query: 82 K 82
          K
Sbjct: 71 K 71


>gi|225076898|ref|ZP_03720097.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens
          NRL30031/H210]
 gi|224951784|gb|EEG32993.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens
          NRL30031/H210]
          Length = 84

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F  + R++R+   L+Q+ +  +    +++I  +E G+    + N+I LA  LD  L +
Sbjct: 7  KQFGKHVRHLRQLQDLSQETLAEKANMHRTYIGMIERGERNPALLNLIRLASALDISLPE 66

Query: 80 LLK 82
          LL 
Sbjct: 67 LLT 69


>gi|254415140|ref|ZP_05028902.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC
          7420]
 gi|196177946|gb|EDX72948.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC
          7420]
          Length = 72

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +N R +R+E  ++Q+E+  + G  ++++  +E  +  I +  +  LA +L      
Sbjct: 5  QVVASNLRKLRQEIGISQEELAGKCGLHRTYVGAIERSERNITLQTLEKLAVSLGVSPLD 64

Query: 80 LLK 82
          LLK
Sbjct: 65 LLK 67


>gi|168702699|ref|ZP_02734976.1| putative transcriptional regulator [Gemmata obscuriglobus UQM
          2246]
          Length = 84

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+ A ++Q+ +    G  ++++S +E GK  I+++N+  LA  L+  +  L+
Sbjct: 16 FGERLREVREGAGISQERLAELAGLHRTYVSSVERGKRNISLENIERLAVALEVEMAALM 75


>gi|254520499|ref|ZP_05132555.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226914248|gb|EEH99449.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 111

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  N  R  R +  LTQ+++  +   + S+I ++E G+  I++D ++++  +L   +  
Sbjct: 4  KLLGNRIRQERLKLNLTQEQLAEKVDLSTSYIGQIERGERNISLDTLVVICKSLGVTIDY 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLQ 66


>gi|197303928|ref|ZP_03168960.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC
          29176]
 gi|197296896|gb|EDY31464.1| hypothetical protein RUMLAC_02665 [Ruminococcus lactaris ATCC
          29176]
          Length = 77

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 39/63 (61%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ +    R IR++ K++Q+E+ +  G  +++IS++E GK  ++++N+  +AH L     
Sbjct: 6  RVAYGKAVRAIRQDKKISQEELGDLCGLHRTYISDIELGKRNVSLENIDKIAHALQMKKS 65

Query: 79 KLL 81
          +L 
Sbjct: 66 ELF 68


>gi|37528130|ref|NP_931475.1| hypothetical protein plu4299 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787567|emb|CAE16671.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 78

 Score = 70.8 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF    R IR  + ++Q+   ++ G  +++IS +E G     ++ + ++A  L   L 
Sbjct: 8  KSIFGQRVRYIRMASGMSQEAFADKCGLDRTYISGIERGVRNPTLEVINVIASGLQIELK 67

Query: 79 KLL 81
           L 
Sbjct: 68 DLF 70


>gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme
          contro elements [Photorhabdus asymbiotica]
          Length = 78

 Score = 70.8 bits (172), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    R++R+ + ++Q+   ++ G  +++IS +E G     ++ + I+A  L   L 
Sbjct: 8  KSLFGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASGLQIELT 67

Query: 79 KLL 81
           L 
Sbjct: 68 DLF 70


>gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937]
 gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937]
          Length = 76

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                + +     + +R +A L+Q+    + G  +++IS +E G     ++ + ILA  
Sbjct: 2  KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61

Query: 73 LDTPLWKLL 81
          L T L  L 
Sbjct: 62 LHTDLTTLF 70


>gi|152983227|ref|YP_001352681.1| subunit S of type I restriction-modification system
          [Janthinobacterium sp. Marseille]
 gi|151283304|gb|ABR91714.1| subunit S of type I restriction-modification system
          [Janthinobacterium sp. Marseille]
          Length = 78

 Score = 70.4 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +++F +N R IR E   TQ+ +        +++S +E G+  I+I N+  +A  LD P+
Sbjct: 12 AQLLFASNIRRIRLEKGFTQERVAELADLHTNYVSSVERGERNISICNIERIAFALDVPM 71

Query: 78 WKLLK 82
           +LL+
Sbjct: 72 SRLLE 76


>gi|326407994|gb|ADZ65062.1| transcriptional regulator, XRE family [Lactococcus lactis subsp.
          lactis CV56]
          Length = 73

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF NN +  R +  L+Q++        +++IS++E  +  ++++++  +A  +    +K
Sbjct: 5  KIFGNNVKRYRLKMGLSQEKFAELCNLHRTYISDIECFQRNVSLESVQKIAEAIQIEPYK 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|253987940|ref|YP_003039296.1| transcription regulator [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779390|emb|CAQ82551.1| similar to transcription regulator and to restriction enzyme
          control elements [Photorhabdus asymbiotica]
          Length = 78

 Score = 70.0 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    R IR  + ++Q+   +R G  +++IS +E G     ++ + ++A  L   L 
Sbjct: 8  KSLFGQRVRYIRMASGMSQEAFADRCGLDRTYISGIERGVRNPTLEVINVIASGLQIELK 67

Query: 79 KLL 81
           L 
Sbjct: 68 DLF 70


>gi|261879523|ref|ZP_06005950.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270333840|gb|EFA44626.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 73

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF +  R +R++  L+Q+++  R G  +++I  +E  +   ++  +  +A+ L     +
Sbjct: 11 KIFAHKVRTLREQQGLSQEKLAERAGLHRTYIGMVERLERNPSLVCIYKIANGLGVHASQ 70

Query: 80 LL 81
          L 
Sbjct: 71 LF 72


>gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 76

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                + +     + +R +A L+Q+    + G  +++IS +E G     ++ + ILA  
Sbjct: 2  KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILAAG 61

Query: 73 LDTPLWKLL 81
          L T L  L 
Sbjct: 62 LHTDLTTLF 70


>gi|298206675|ref|YP_003714854.1| transcriptional regulator, XRE family protein [Croceibacter
          atlanticus HTCC2559]
 gi|83849306|gb|EAP87174.1| transcriptional regulator, XRE family protein [Croceibacter
          atlanticus HTCC2559]
          Length = 67

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F NN R +RKE   +Q+E+ ++    +++I  +E  +  I + N+  ++  LD  + +L 
Sbjct: 8  FGNNIRRLRKEQGFSQEELAHKADLHRTYIGMIERAEKNITLLNIGKISKALDVEIKELF 67


>gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7]
 gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7]
          Length = 70

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +R +  ++Q+E+  R G ++++IS++E G   +++ ++  +A+     L +L 
Sbjct: 8  FGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAVNLKELF 67


>gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 76

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                + +     + +R +A L+Q+    + G  +++IS +E G     ++ + ILA  
Sbjct: 2  KTSDSVKTLLGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61

Query: 73 LDTPLWKLL 81
          L T L  L 
Sbjct: 62 LHTDLTTLF 70


>gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 73

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 35/69 (50%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               + +F  + R +R+E   +Q+E+  R G  ++++  +E G+  + ++N++ LA  L
Sbjct: 2  PAHSPKFLFGKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKAL 61

Query: 74 DTPLWKLLK 82
                L +
Sbjct: 62 SVKSRDLFE 70


>gi|50364882|ref|YP_053307.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1]
 gi|50363438|gb|AAT75423.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1]
          Length = 78

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  +N + IR+  KL+Q+E+  R G +++++S+ E GK  I I     +   L     +
Sbjct: 12 LLVASNLKRIRQNKKLSQEELGFRCGISKNYVSDFERGKRNITIKVFQKIVEGLGVQPEE 71

Query: 80 LLK 82
          LLK
Sbjct: 72 LLK 74


>gi|297570404|ref|YP_003691748.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926319|gb|ADH87129.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 77

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK   L+Q+E+ ++    +++I  +E  +  I + NM+ +A  LD  L +LL
Sbjct: 11 FGGRVKLARKNKGLSQEELASKASLHRTYIGMIERAEKNITLINMMKIAKALDVKLIELL 70

Query: 82 K 82
          +
Sbjct: 71 E 71


>gi|167754979|ref|ZP_02427106.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402]
 gi|167705029|gb|EDS19608.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402]
          Length = 73

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +R +  ++Q+E+  R G ++++IS++E G   +++ ++  +A+     L +L 
Sbjct: 11 FGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAVNLKELF 70


>gi|188583054|ref|YP_001926499.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179346552|gb|ACB81964.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 79

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R IR E  L+Q  + +     +++IS +E G   ++ID +  LA  L    W
Sbjct: 10 REILATNLRRIRAEKGLSQDALADLCEIDRTYISGVERGLRNVSIDTLERLATGLRLEPW 69

Query: 79 KLLK 82
           L++
Sbjct: 70 LLIR 73


>gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus
          polymyxa E681]
          Length = 115

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R+IRK   L+Q+ +  + GF  S+I  +E  +  I++ N+  +A  L+  +++
Sbjct: 6  ELVGTRIRDIRKSKGLSQEALAEKAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQ 65

Query: 80 LLK 82
          LL 
Sbjct: 66 LLT 68


>gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
          29413]
 gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
          29413]
          Length = 83

 Score = 69.6 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+E   +Q+E+  + G  +++IS +ETG    ++ N+  LA  L+  +  L 
Sbjct: 12 FGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGTRNPSLKNIEKLAKALNISISDLF 71

Query: 82 K 82
           
Sbjct: 72 T 72


>gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 120

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R+ R     +Q+++  + G  +++I  +E G+  I + N   +A  L+  +  L
Sbjct: 10 MLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIADALNLAMHDL 69

Query: 81 LK 82
          +K
Sbjct: 70 MK 71


>gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 69

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F    R +R+E   +Q+E  +R G  ++++S +E G     +  +  LA  LD  L 
Sbjct: 4  RQKFGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSVLERLAKALDIKLS 63

Query: 79 KLLK 82
          +L++
Sbjct: 64 ELVQ 67


>gi|212640061|ref|YP_002316581.1| putative xre family transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212561541|gb|ACJ34596.1| Predicted transcriptional regulator, xre family [Anoxybacillus
          flavithermus WK1]
          Length = 81

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I  NN R+IR    L+Q+E+   +G  +++I  +E G+  I I N+I +A+ L+  +  
Sbjct: 12 KIIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIKIANALEVRVQD 71

Query: 80 LL 81
          LL
Sbjct: 72 LL 73


>gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b]
          Length = 179

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R +  LTQ+E+  RT  ++ +IS++E   S+ +++ +  L + L +   +  
Sbjct: 3  VGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKEFF 62


>gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 83

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     R +R +  L+Q+   ++ G  ++++S +E G     +  +  ++  L+  L 
Sbjct: 8  KKILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDGLEMDLS 67

Query: 79 KLL 81
           L 
Sbjct: 68 HLF 70


>gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 78

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    R  R+ + ++Q+   ++ G  +++IS +E G     ++ + I+A  L   L 
Sbjct: 8  KFLFGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASGLQIELT 67

Query: 79 KLL 81
           L 
Sbjct: 68 DLF 70


>gi|323345085|ref|ZP_08085309.1| transcriptional regulator [Prevotella oralis ATCC 33269]
 gi|323094355|gb|EFZ36932.1| transcriptional regulator [Prevotella oralis ATCC 33269]
          Length = 85

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R++  ++Q+E+  R G  +++I  +E  +  + + N+  +A  L   +  L 
Sbjct: 25 FGQIVRRYREDMNISQEELAFRAGLHRTYIGMIERAEKNVTLCNIKKIADALGIDIKDLF 84


>gi|300692596|ref|YP_003753591.1| hypothetical protein RPSI07_2974 [Ralstonia solanacearum PSI07]
 gi|299079656|emb|CBJ52333.1| conserved hypothethical protein, DNA binding protein domain,
          putative regulator [Ralstonia solanacearum PSI07]
          Length = 75

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N R  R E  L+Q+++  + G  ++++  LE  +  + I N+  +A  LD     L
Sbjct: 13 IFAANVRRRRLELGLSQEDLAEKAGVHRTYVGMLERAEKNVTIYNIQRIADALDVEPSAL 72

Query: 81 LK 82
          L+
Sbjct: 73 LQ 74


>gi|24376233|ref|NP_720341.1| type II restriction-modification system activator, putative
          [Shewanella oneidensis MR-1]
 gi|24344698|gb|AAN52941.1| type II restriction-modification system activator [Shewanella
          oneidensis MR-1]
          Length = 75

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R  R +  ++Q+++    GF +++I  +E G+    +  + +LA TL+  + +LL
Sbjct: 12 LANNVRTFRLKNGISQEQLAEICGFHRTYIGSIERGERNTTLSTLEVLAKTLNVSIAQLL 71


>gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis
          Aspo-2]
          Length = 108

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+ +L+Q  +    G    ++ E+E G + I++ N+  +A  L    ++LL
Sbjct: 8  LGKRIRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNNISVKNLGQIAAALGVETYELL 67


>gi|311278399|ref|YP_003940630.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308747594|gb|ADO47346.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 76

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + + +R ++ L+Q+   ++ G  ++++S +E G     ++ + +LA  L   + +L 
Sbjct: 11 FGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVIGVLAKGLGMDIKELF 70


>gi|297539828|ref|YP_003675597.1| XRE family transcriptional regulator [Methylotenera sp. 301]
 gi|297259175|gb|ADI31020.1| transcriptional regulator, XRE family [Methylotenera sp. 301]
          Length = 76

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    ++IR E  L+Q+++       +++IS +E G   +++ N+  LA  L+    +
Sbjct: 7  KVFGARIKSIRLEKGLSQEQLGLIAELDRTYISGIERGLRNVSLINIERLALALNIEPAE 66

Query: 80 LLK 82
          LLK
Sbjct: 67 LLK 69


>gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 78

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F N  R +R+   L+Q+ + +     +S+I  +E G+  I++ N+  +A  L     
Sbjct: 10 RKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIADALGISPK 69

Query: 79 KLL 81
          +  
Sbjct: 70 EFF 72


>gi|148553099|ref|YP_001260681.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148498289|gb|ABQ66543.1| transcriptional regulator, XRE family [Sphingomonas wittichii
          RW1]
          Length = 75

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N   +RK+  L Q+      G +QS++S++E G   + +  +  LA  L  P  
Sbjct: 4  RKLVGGNVARLRKKTGLKQEPFSEAAGISQSYLSQIENGHVNLTLLGVNDLAQALGVPPI 63

Query: 79 KLLK 82
          +L +
Sbjct: 64 ELFR 67


>gi|209543154|ref|YP_002275383.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530831|gb|ACI50768.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 83

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N R +R+ A L+Q+ +  R G  +++IS +ETG+  + + ++   +  L     
Sbjct: 4  RGLFGANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNVTLLSLWHASQALGVRPA 63

Query: 79 KLL 81
           LL
Sbjct: 64 ALL 66


>gi|255012031|ref|ZP_05284157.1| DNA-binding protein [Bacteroides fragilis 3_1_12]
 gi|313149871|ref|ZP_07812064.1| predicted protein [Bacteroides fragilis 3_1_12]
 gi|313138638|gb|EFR55998.1| predicted protein [Bacteroides fragilis 3_1_12]
          Length = 72

 Score = 68.5 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R +R+   ++Q+++  R G  +++I  +E  +   ++  +  +A+ L   + +
Sbjct: 11 KQFAQRVRTLREAQGISQEKLAERAGLHRTYIGMVERLERNPSLVCIHKIANGLGVHVTE 70

Query: 80 LL 81
          L 
Sbjct: 71 LF 72


>gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    R IR+   +TQ+++   +G +  +I E+E G+   ++ ++  LA     PL 
Sbjct: 5  QELFGKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLA 64

Query: 79 KLL 81
          +L 
Sbjct: 65 ELF 67


>gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97]
 gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97]
          Length = 119

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +RK+  LTQ+E+  R    Q++I  +E G+  I++  +  +A  L+     
Sbjct: 6  KLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEVSPDL 65

Query: 80 LL 81
          +L
Sbjct: 66 VL 67


>gi|163732391|ref|ZP_02139837.1| DNA-binding protein [Roseobacter litoralis Och 149]
 gi|161394689|gb|EDQ19012.1| DNA-binding protein [Roseobacter litoralis Och 149]
          Length = 71

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N +  RK+A  +Q+ +    G  ++++S +E G     +  +  +A  L  P  
Sbjct: 4  RQRVGRNLKKYRKQAGFSQEGLALECGLHRTYVSGVERGVRNPTVVVLERIAEALKVPAA 63

Query: 79 KLL 81
          +LL
Sbjct: 64 RLL 66


>gi|258543862|ref|ZP_05704096.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC
          15826]
 gi|258520902|gb|EEV89761.1| transcriptional regulator PvuIIC [Cardiobacterium hominis ATCC
          15826]
          Length = 85

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E   +++I   R+ F  N R +R+   ++Q+E+    G ++ ++S++E G   + ID M 
Sbjct: 3  EAQSTESIPEIRLRFAQNLRTLRRLKNISQEELAFSAGISRVYLSDVERGNRAVTIDVMG 62

Query: 68 ILA 70
           LA
Sbjct: 63 KLA 65


>gi|50365272|ref|YP_053697.1| Cro/CI family transcriptional regulator [Mesoplasma florum L1]
 gi|50363828|gb|AAT75813.1| transcriptional regulator Cro/CI family [Mesoplasma florum L1]
          Length = 75

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N R IR    LTQ+E+  R G ++++IS+ E G+  I I  +  L   L+T   +
Sbjct: 12 LIIAANLRKIRSSKGLTQEELGFRCGISKNYISDFERGRRNITIKILQKLIEGLETTPQE 71

Query: 80 LLK 82
          LLK
Sbjct: 72 LLK 74


>gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 111

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     R  RK+   TQ+++        S+I  +E G   I+++ +  +A  LD P   
Sbjct: 5  EIVGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERGDRNISLETLEKIAVALDVPAGD 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFR 67


>gi|78048175|ref|YP_364350.1| hypothetical protein XCV2619 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78036605|emb|CAJ24296.1| conserved hypothetical protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 91

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F      +RK   L+Q+ +   +G A+S++  +E G+  I + N+  LA  L     
Sbjct: 18 RVLFGLRLAEVRKTKGLSQERLALESGLARSYLGGVERGQRNIALLNIYRLAEALGVHPT 77

Query: 79 KLLKP 83
           LL+P
Sbjct: 78 LLLEP 82


>gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    ++IR+   +TQ+++ + +G +  +I E+E G+   ++ ++  LA  LD P+ +L
Sbjct: 7  LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAEL 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|221213709|ref|ZP_03586683.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221166498|gb|EED98970.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
          Length = 81

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F      +RK    +Q+++   +G A+S++  +E G+  I + N+ +LA TL+ P   
Sbjct: 7  ELFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVPPSD 66

Query: 80 LL 81
          +L
Sbjct: 67 ML 68


>gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 190

 Score = 67.7 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
               E   F +  +  RK  K+T KE+  +     S +S++E G +  +I+ M ++A+ 
Sbjct: 2  KKEPYEENTFYSRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANA 61

Query: 73 LDTPLWKLL 81
          LD PL+K  
Sbjct: 62 LDVPLFKFF 70


>gi|11995223|ref|NP_072081.1| PvuIIC [Proteus vulgaris]
 gi|455322|gb|AAA96335.1| PvuIIC [Proteus vulgaris]
          Length = 84

 Score = 67.7 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 36/66 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L  R+    N + +R E  L+Q+ + +  G  +++I  +E  +  I+IDN+  +A+ L+ 
Sbjct: 8  LSARLTLAKNVKKMRGELGLSQESLADLVGIHRTYIGSIERAERNISIDNIERIANALNV 67

Query: 76 PLWKLL 81
           +  L+
Sbjct: 68 SISILM 73


>gi|114045848|ref|YP_736398.1| XRE family transcriptional regulator [Shewanella sp. MR-7]
 gi|117922235|ref|YP_871427.1| XRE family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113887290|gb|ABI41341.1| transcriptional regulator, XRE family [Shewanella sp. MR-7]
 gi|117614567|gb|ABK50021.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3]
          Length = 76

 Score = 67.7 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + +++R E   +Q+++  +    ++++S +E G+  +++ N+  LA  LD P  +LL
Sbjct: 9  FGTHLKSLRLERSFSQEQLALKADMDRTYVSGIERGQRNVSLINIFKLAKALDIPAKQLL 68


>gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 213

 Score = 67.7 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 41/75 (54%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D  H      +  +I   N R++R+++ L+ +++  ++G +++ + ++ETGKS   I+ +
Sbjct: 11 DPQHSESVATKLSIIVGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAPTINLL 70

Query: 67 IILAHTLDTPLWKLL 81
            +A  L   +  L+
Sbjct: 71 GRIAEALQVSVPSLI 85


>gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937]
 gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937]
          Length = 102

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    + +R +A L+Q+   ++ G  +++IS +E G     ++ + ++A  L+  L  L 
Sbjct: 41  FGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGVIADRLEIQLQSLF 100


>gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 107

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    ++IR+   +TQ+++ + +G +  +I E+E G+   ++ ++  L+  LD P+ +L
Sbjct: 7  LFGKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAEL 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|295087511|emb|CBK69034.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A]
          Length = 74

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RKE +++Q+E+ ++    +++I  +E  +  + + N+  +A  L+  +    
Sbjct: 8  FGERVRQLRKEKRMSQEELADKANLHRTYIGMIERAEKNVTLINIEKIAKALEVSIQDFF 67


>gi|162146218|ref|YP_001600677.1| transcriptional regulatory protein [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161784793|emb|CAP54335.1| putative transcriptional regulatory protein [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 83

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N R +R+ A L+Q+ +  R G  +++IS +ETG+    + ++   +  L     
Sbjct: 4  RGLFGANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNATLLSLWHASQALGVRPA 63

Query: 79 KLL 81
           LL
Sbjct: 64 TLL 66


>gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 96

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          ++     +   R R+    N + +R E  L+Q++      F ++++S+LE   + I+ID 
Sbjct: 13 KNTHATLNPNARTRISL--NLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTNISIDG 70

Query: 66 MIILAHTLDTPLWKLLK 82
          +  LA  L   + +LL+
Sbjct: 71 LERLAEALGVDITELLQ 87


>gi|166364239|ref|YP_001656512.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
 gi|159030851|emb|CAO88530.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|166086612|dbj|BAG01320.1| transcriptional regulator [Microcystis aeruginosa NIES-843]
          Length = 103

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     N R +  L+Q+ +       +++IS LE GK   ++  +I L   L+  L +L 
Sbjct: 26 FGRCLHNARIQKGLSQERLAEAANLDRTYISLLERGKRNPSLLCLISLCRALNISLSELF 85


>gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus
          polymyxa SC2]
 gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein
          [Paenibacillus polymyxa SC2]
          Length = 115

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R+IRK   L+Q+ +  + GF  S+I  +E  +  I++ N+  +A  L+  +++
Sbjct: 6  ELVGTRIRDIRKSKGLSQEALAEQAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQ 65

Query: 80 LLK 82
          LL 
Sbjct: 66 LLT 68


>gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila
          RKU-1]
          Length = 188

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L    
Sbjct: 16 GEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 74


>gi|217970536|ref|YP_002355770.1| XRE family transcriptional regulator [Thauera sp. MZ1T]
 gi|217507863|gb|ACK54874.1| transcriptional regulator, XRE family [Thauera sp. MZ1T]
          Length = 85

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 38/64 (59%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F  +   +R+    +Q+ +   +G A+S++  +E G+  I + N+I LA+ L+ P  
Sbjct: 8  RVLFGKHLAELRRSRGWSQEYLALESGLARSYLGGVERGQRNIALLNIIRLANALELPPS 67

Query: 79 KLLK 82
          KLL+
Sbjct: 68 KLLE 71


>gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
 gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
          Length = 122

 Score = 67.7 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +RK+  LTQ+E+  R    Q++I  +E G+  I++  +  +A  L+    K
Sbjct: 9  KLVGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPEK 68

Query: 80 LL 81
          +L
Sbjct: 69 VL 70


>gi|56708873|ref|YP_164916.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56680558|gb|AAV97223.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 72

 Score = 67.7 bits (164), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IR+E  L+Q+E+ +R    Q+++S +ETGK   +I  +  +A  L   + ++ 
Sbjct: 10 VSRNIQRIRREKDLSQEEVAHRADIHQTYLSGVETGKRNPSILVVERIAKALGVDVSEIF 69

Query: 82 KP 83
          KP
Sbjct: 70 KP 71


>gi|148254764|ref|YP_001239349.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406937|gb|ABQ35443.1| putative transcriptional regulatory protein [Bradyrhizobium sp.
          BTAi1]
          Length = 87

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N +++R+   ++Q+E+ +R    +++IS +E  ++ ++ID +  LA  L     
Sbjct: 6  RDILATNLKHLRRTKGVSQEELAHRAEIDRTYISMIERSRNAVSIDVLAALAGGLGVEPA 65

Query: 79 KLLKP 83
           LLKP
Sbjct: 66 DLLKP 70


>gi|141422|sp|P14307|YSMA_SERMA RecName: Full=Uncharacterized HTH-type transcriptional regulator
          in smaI restriction system 5'region
 gi|581714|emb|CAA34477.1| unnamed protein product [Serratia marcescens]
          Length = 84

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N R+ R    L+Q+++   +G  +++I  +E  +  + +  +IILA  L+T + 
Sbjct: 12 KEILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILAKALNTSVP 71

Query: 79 KLLK 82
          KLL 
Sbjct: 72 KLLT 75


>gi|307704202|ref|ZP_07641125.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307622233|gb|EFO01247.1| helix-turn-helix family protein [Streptococcus mitis SK597]
          Length = 108

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R++R   K+TQ+E+  RT  +  +IS++E     I+++  + +   L+ PL     P
Sbjct: 10 NQIRDLRVSKKITQQELAERTNLSVPYISQIENSHRNISLETFVKIVDALEVPLSDFFLP 69


>gi|291530055|emb|CBK95640.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Eubacterium siraeum 70/3]
          Length = 115

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN R +  L+Q+++   +G   ++I ++E G+    ++++  +A  ++  L +L +
Sbjct: 14 GQRVRNYRIDKGLSQEKLAELSGCHPTYIGQVERGEKNATLESIEKIASAMNISLAQLFE 73


>gi|218248605|ref|YP_002373976.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|257061671|ref|YP_003139559.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|218169083|gb|ACK67820.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
 gi|256591837|gb|ACV02724.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 72

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R  RK   ++Q ++  + G  +++I  +E G+  +++ N++ LA  L+  + +
Sbjct: 6  KAFGMRVRYFRKLLGISQDDLAEKAGMHRTYIGAIERGERNVSLLNILRLADALEIKVKE 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 75

 Score = 67.3 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  F    R +RKE   L+Q+   ++ GFA+S+   +ETGK+  ++D +  +A  L   +
Sbjct: 8  RQRFGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAEGLGVEV 67

Query: 78 WKLLK 82
            L +
Sbjct: 68 SALFE 72


>gi|237798533|ref|ZP_04586994.1| hypothetical protein POR16_06826 [Pseudomonas syringae pv. oryzae
          str. 1_6]
 gi|331021386|gb|EGI01443.1| hypothetical protein POR16_06826 [Pseudomonas syringae pv. oryzae
          str. 1_6]
          Length = 77

 Score = 67.3 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 14 AILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           I  ++      F +N R  R    L+Q+E+    G  +++I  LE  +  + I N+  L
Sbjct: 2  PIPPDQCPLVATFASNVRIKRLALGLSQEELAELAGLHRTYIGMLERSEKNVTIYNIWRL 61

Query: 70 AHTLDTPLWKLL 81
          A  L      LL
Sbjct: 62 ACALQVEAVDLL 73


>gi|300717762|ref|YP_003742565.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661]
 gi|299063598|emb|CAX60718.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661]
          Length = 69

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+  LTQ+ +       ++++S LETGK   ++  +  LA  L   + ++ 
Sbjct: 9  FGKRVALLRKDKHLTQEALAEACDLNRTYLSGLETGKRNPSLSTISKLAKALGIQMKEIF 68


>gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 151

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 39/81 (48%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR+  +  +L D  L+   I     +++R    L+QK +  ++G +  +I  +E G   
Sbjct: 1  MPRKPVNINNLDDETLKSLAIIGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQN 60

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            I  +  ++  L+ P + +L
Sbjct: 61 ATIGILKRISDALEVPFYSIL 81


>gi|86739602|ref|YP_480002.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566464|gb|ABD10273.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 81

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +      F    R  R E  L+Q+++ +  G   +++ ++E G+  I++ N++ LA  L
Sbjct: 5  PLSTAAQTFGERVRAQRHELGLSQEQLADECGLHWTFVGQVERGRRNISLHNILKLADAL 64

Query: 74 DTPLWKLLK 82
               +L++
Sbjct: 65 KIDPAELVR 73


>gi|172034932|ref|YP_001801433.1| hypothetical protein cce_0015 [Cyanothece sp. ATCC 51142]
 gi|171696386|gb|ACB49367.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 361

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R    L+Q+++       +++IS LE GK   ++  +  LA  L+  L +L+
Sbjct: 15 FGQKLQKWRLIQNLSQEQLAEIINVDRTYISLLERGKRNPSLICIKSLAEALNINLNELI 74


>gi|108936762|emb|CAK48822.1| Sse9I control protein [Sporosarcina sp.]
          Length = 92

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R++R    L+Q+ +    G  ++++  LE G+    + ++  +A  LD     LL
Sbjct: 18 FGQNLRDLRVARGLSQEALAELIGVHRTYMGGLERGERNPTLKSVERVAAHLDVDPLSLL 77

Query: 82 K 82
           
Sbjct: 78 T 78


>gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
 gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
          Length = 119

 Score = 66.9 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +RK+  LTQ+E+  +    Q++I  +E G+  I++  +  +A  L+    +
Sbjct: 6  KLVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDE 65

Query: 80 LL 81
          +L
Sbjct: 66 VL 67


>gi|120600549|ref|YP_965123.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294707|ref|YP_001185131.1| XRE family transcriptional regulator [Shewanella putrefaciens
          CN-32]
 gi|120560642|gb|ABM26569.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1]
 gi|145566397|gb|ABP77332.1| transcriptional regulator, XRE family [Shewanella putrefaciens
          CN-32]
          Length = 75

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + + +R E   +Q+++  +    ++++S +E G+  +++ N+  LA  LD P  +LL
Sbjct: 9  FGVHLKRLRLERSFSQEQLALKADMDRTYVSGIERGQRNVSLINIFKLAKALDIPAKQLL 68


>gi|254410170|ref|ZP_05023950.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC
          7420]
 gi|196183206|gb|EDX78190.1| hypothetical protein MC7420_7928 [Microcoleus chthonoplastes PCC
          7420]
          Length = 75

 Score = 66.9 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  + R  R+E   +Q+++    G  ++++  +E G+  I+++N++ L   L     
Sbjct: 4  REKFGADVRARREELGFSQEQLAELAGMHRTYVGSIERGERNISLENIVKLCEALQIKPS 63

Query: 79 KLL 81
           L+
Sbjct: 64 SLM 66


>gi|299534387|ref|ZP_07047722.1| MerR family transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
 gi|298730151|gb|EFI70691.1| MerR family transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
          Length = 116

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +N + IRK  KLTQ+E+  + G   S+++ +E G     I  +  +   L+     
Sbjct: 6  KLVGSNIKEIRKLKKLTQEELAEKCGLQASYLAGVERGDRNFTIQTLEKITEGLEVAPSS 65

Query: 80 LLK 82
          + K
Sbjct: 66 IFK 68


>gi|167744431|ref|ZP_02417205.1| transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167897070|ref|ZP_02484472.1| transcriptional regulator [Burkholderia pseudomallei 7894]
          Length = 93

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+   + P   D     R +   N R +R +   +Q+ +    G  ++++S +E  +  +
Sbjct: 5  PKPPTELPSPDDL----RGVLAFNVRLLRVQRGWSQERLALECGLDRTYVSAVERSRWNV 60

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
          ++ N+  +A  L+   W LLKP
Sbjct: 61 SLSNIEAIAKALEVQPWALLKP 82


>gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Ruminococcus sp. 18P13]
          Length = 110

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     RN R +  L+Q+++    G   ++I +LE G+    ++++  +A  +D  L +
Sbjct: 6  KIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMDISLSE 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|254673014|emb|CBA07557.1| transcriptional regulator [Neisseria meningitidis alpha275]
          Length = 137

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 50  RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 109

Query: 79  KLLKP 83
           +LL P
Sbjct: 110 QLLLP 114


>gi|78186562|ref|YP_374605.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78166464|gb|ABB23562.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 101

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
             H  +    E++      R  R  A  TQ+++  R+G + ++I  +E G+  I I N 
Sbjct: 11 ALNHQQNKSPAEKL--GLKIRIARIMASYTQEKLAVRSGLSMAYIGMIERGEKNITILNC 68

Query: 67 IILAHTLDTPLWKLL 81
            LA  LD  +  LL
Sbjct: 69 HKLAKALDITIGDLL 83


>gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter
          bemidjiensis Bem]
 gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter
          bemidjiensis Bem]
          Length = 110

 Score = 66.9 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +N R +RK    +Q+E+      +  ++ E+E G    ++D+++ +A+ L  P+ 
Sbjct: 8  RQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIA 67

Query: 79 KLL 81
          +L 
Sbjct: 68 ELF 70


>gi|261866843|ref|YP_003254765.1| XRE family transcriptional regulator [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261412175|gb|ACX81546.1| transcriptional regulator, XRE family [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 70

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+  L+Q+ +       +S+I  +E G+  I++ N+  +   L+  +    
Sbjct: 10 FGKKVKELRKQKGLSQEALALLCDLDRSYIGGVERGERNISLINIYKITLALNIDIKDFF 69


>gi|307710145|ref|ZP_07646589.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619125|gb|EFN98257.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 108

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R++R   K+TQ+E+  RT  +  +IS++E     I+++  + +   L+ PL     P
Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVPLSDFFLP 69


>gi|53718395|ref|YP_107381.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52208809|emb|CAH34748.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
          Length = 102

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N + IR    ++Q+E+ +R G  +++IS++E   + +++DN+ +LA  L     
Sbjct: 13 RNRLSRNLKRIRAAQNISQEELGDRAGLHRTYISQVERTVTNVSLDNIYLLAEALGVDPA 72

Query: 79 KLL 81
          +LL
Sbjct: 73 ELL 75


>gi|256821176|ref|YP_003142375.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256799156|gb|ACV29810.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 78

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N +  R E  L+Q+    ++GF +++IS LE  K +I +DN+  +A  L+   + 
Sbjct: 5  EVFSKNVKKYRNEMGLSQEAFAEKSGFYRTYISALECKKRSIALDNVQKIADALEIETYL 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 112

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R IRK+   +Q+++  R     S++ ++E G+ +  +D +  +AH L  PL +L+
Sbjct: 9  GENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQCPLEQLV 67


>gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681]
 gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa
          E681]
          Length = 114

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R IRK   LTQ+++   +G   ++I  +E G+   +ID +  +   L+  + 
Sbjct: 5  RDSVGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGERNFSIDTLEKVLTALNVSIS 64

Query: 79 KLL 81
          +L+
Sbjct: 65 ELM 67


>gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2]
 gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila
          RKU-10]
 gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2]
 gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila
          RKU-10]
          Length = 176

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L    
Sbjct: 4  GEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62


>gi|225573403|ref|ZP_03782158.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039213|gb|EEG49459.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM
          10507]
          Length = 75

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F NN R  R+    +Q+E       ++++   +E G+ +I I+   ++A  L   +  L 
Sbjct: 11 FGNNLRKFREAKGCSQEEFAEICKISRAYYGRIERGEHSITIEKCALIAQALGIHISVLF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 70

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RKE  L+Q+E     G  ++++S +E G    ++  +  LA  L   + +L 
Sbjct: 8  FGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGVRNPSLAVIETLAGALGIRVEELF 67

Query: 82 K 82
          +
Sbjct: 68 R 68


>gi|217980119|ref|YP_002364169.1| helix-turn-helix domain protein [Thauera sp. MZ1T]
 gi|217508290|gb|ACK55075.1| helix-turn-helix domain protein [Thauera sp. MZ1T]
          Length = 82

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
                    R +   N    R+E   +Q+++   +G  +S+I+ +E     I++DN+  
Sbjct: 5  HPTPQDSPAARAVLSANLVRFRRERGWSQEKLAFESGLDRSFIAHVERQARNISLDNIER 64

Query: 69 LAHTLDTPLWKLLKP 83
          LA TL  P   LL P
Sbjct: 65 LARTLGVPFHVLLTP 79


>gi|303326711|ref|ZP_07357153.1| BamHI control element [Desulfovibrio sp. 3_1_syn3]
 gi|302862699|gb|EFL85631.1| BamHI control element [Desulfovibrio sp. 3_1_syn3]
          Length = 83

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F       R+   ++Q+++  R G  +++I  +E G+  +++ N++ +A  L     +
Sbjct: 13 KQFGAALGAKREALHISQEKLAERAGLHRTYIGGVEQGRRNLSLLNIVKIATALGVNPEE 72

Query: 80 LL 81
            
Sbjct: 73 FF 74


>gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
          Length = 113

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +RK+  LTQ+E+  +    Q++I  +E G+  I++  +  +A  L+    ++
Sbjct: 1  MVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEV 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|153004060|ref|YP_001378385.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp.
          Fw109-5]
 gi|152027633|gb|ABS25401.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 68

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R + KL+QK + ++ G + S++S LE G+ +  ++ +  +A  L  P   LL
Sbjct: 7  FAGNVRRLRAKKKLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPANLL 66


>gi|307067495|ref|YP_003876461.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|306409032|gb|ADM84459.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
          Length = 156

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       R +R     TQ+      G  +++I+++E GK  I+I+N+  +A  L   L 
Sbjct: 3  KKELGQEIRKLRTARGFTQETFSKACGLDRTYIADVELGKRNISIENIDKIAKGLAITLP 62

Query: 79 KLLK 82
          +L K
Sbjct: 63 ELFK 66


>gi|148252780|ref|YP_001237365.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp.
          BTAi1]
 gi|146404953|gb|ABQ33459.1| Putative HTH-type transcriptional regulator [Bradyrhizobium sp.
          BTAi1]
          Length = 75

 Score = 66.2 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           L  A+   R +   N R IR++ ++TQ+++        +++  +E GK   ++  M  +
Sbjct: 2  VLDPAMQDWRAVLGRNVRKIRQQRRMTQEKLAFEAEIDLTYMGGIERGKRNPSLLVMARI 61

Query: 70 AHTLDTPLWKLL 81
          A  L  PL KLL
Sbjct: 62 AEALSVPLTKLL 73


>gi|313676043|ref|YP_004054039.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312942741|gb|ADR21931.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 81

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             L     F    + IR    L+Q+E+       ++++  +E G+  ++I N+ +L   
Sbjct: 3  KKDLSPEEKFGATLKAIRLSKGLSQEELAFSANLHRTYVGSVERGERNVSIRNIFVLCEA 62

Query: 73 LDTPLWKLLK 82
          LD       +
Sbjct: 63 LDIKPSDFFR 72


>gi|145219417|ref|YP_001130126.1| XRE family transcriptional regulator [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205581|gb|ABP36624.1| putative transcriptional regulator, XRE family [Chlorobium
          phaeovibrioides DSM 265]
          Length = 78

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R+ R     +Q+++  + G  +++I  +E G+  I + N   +   L+  +  L
Sbjct: 1  MLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIVDALNLAMHDL 60

Query: 81 LK 82
          +K
Sbjct: 61 MK 62


>gi|120555195|ref|YP_959546.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8]
 gi|120325044|gb|ABM19359.1| putative transcriptional regulator, XRE family [Marinobacter
          aquaeolei VT8]
          Length = 74

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F  N R IRK    +Q+ + +  G  +S++ ++E G+  I ++ + + A  L+     
Sbjct: 7  EAFGRNLRAIRKSKGFSQERLAHDAGIDRSYVGKIERGEVNITLEKIYVFAELLECSPKD 66

Query: 80 LL 81
          L+
Sbjct: 67 LM 68


>gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 116

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +     R IRK   LTQ ++   + F  S+I  +E G+  ++++N+  +A  L   L
Sbjct: 6  ELVGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKL 63


>gi|330941285|gb|EGH44146.1| hypothetical protein PSYPI_17842 [Pseudomonas syringae pv. pisi
          str. 1704B]
          Length = 77

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N R  R E  L+Q+ +  R G  ++++  LE  +    I N+  +A  L+     L
Sbjct: 13 IFAANVRRRRLELGLSQEALAERAGVHRTYVGMLERSEKNCTIYNIERIAQALNVDPELL 72

Query: 81 LK 82
          LK
Sbjct: 73 LK 74


>gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
 gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 69

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R +  L+QK + ++ G + S++S LE G+ +  ++ +  +A  L  P   LL
Sbjct: 7  FAGNVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALL 66


>gi|47459180|ref|YP_016042.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K]
 gi|47458509|gb|AAT27831.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K]
          Length = 361

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK  +++QKE+   TG  +  IS +E G     +D +  ++  L+  L +LL
Sbjct: 8  FGTRLKELRKSKQISQKELSESTGIVREQISRIENGLVNPTLDTLHKISLALNIFLHELL 67


>gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens
          ATCC 49175]
 gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens
          ATCC 49175]
          Length = 180

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R +  LTQ+E+  RT  ++ +IS+LE   S+ ++D    +   L  P     
Sbjct: 4  GHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAADFF 62


>gi|300691138|ref|YP_003752133.1| HTH-type transcriptional regulator [Ralstonia solanacearum PSI07]
 gi|299078198|emb|CBJ50841.1| putative HTH-type transcriptional regulator [Ralstonia
          solanacearum PSI07]
          Length = 93

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  + +    L       R +   N R +R     +Q+ +    G  ++++S +E  +  
Sbjct: 1  MSAKPKPPTELPAPNDL-RGVLAFNVRLLRVGRGWSQERLALECGLDRTYVSAVERSRWN 59

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          +++ N+  +A  L+   W LLKP
Sbjct: 60 VSLSNIEAIAKALEVQPWALLKP 82


>gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 91

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+  LL
Sbjct: 8  FGAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEHLL 67

Query: 82 KP 83
           P
Sbjct: 68 TP 69


>gi|254497907|ref|ZP_05110672.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352905|gb|EET11675.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 78

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + +   N  R +RK    +Q+   + +G  +S++  +E G+  I   N+I +A  L+  
Sbjct: 5  PQLLKLGNKIREMRKAHGFSQEAFASESGVDRSYMGSVERGERNIAALNLIKIAQALNVE 64

Query: 77 LWKLLKP 83
          + +L  P
Sbjct: 65 VGELFPP 71


>gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp.
          carnosus TM300]
 gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp.
          carnosus TM300]
          Length = 179

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RK   LTQ+E+  RT  ++ +IS++E+G+S+ ++++ + +   L T      K
Sbjct: 4  GQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPELFFK 63


>gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45]
 gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45]
          Length = 213

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 1  MPRRKRDEPHLSDA----ILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISE 53
          MP +KR      +       RE+ +        R +RK  ++T  ++  +TG +   +S+
Sbjct: 1  MPIKKRSAALSQNPHAVGEPREKNLEVAIGRQVRELRKRQRMTGGDLAGKTGLSVGMLSK 60

Query: 54 LETGKSTINIDNMIILAHTLDTPLWKLL 81
          +E G  + +++ M  LA+ L  PL +L 
Sbjct: 61 IENGVISPSLNTMSALANALGVPLVQLF 88


>gi|167563774|ref|ZP_02356690.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis EO147]
          Length = 81

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F      +RK    +Q+++   +G A+S++  +E G+  I + N+ +LA TL+    
Sbjct: 6  RELFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLEVVPS 65

Query: 79 KLL 81
           +L
Sbjct: 66 DML 68


>gi|186685408|ref|YP_001868604.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186467860|gb|ACC83661.1| putative transcriptional regulator, XRE family [Nostoc
          punctiforme PCC 73102]
          Length = 87

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
               L  +  F    R  R+E  L+Q+++  R    +++IS LE G+   +++ M  LA
Sbjct: 2  SEKNELSIKQRFGKAVRRRRRELDLSQEQLAERAELHRTYISNLERGELNPSLETMEKLA 61

Query: 71 HTLDTPLWKLL 81
          + L+  +  + 
Sbjct: 62 NALNISIPAMF 72


>gi|169344358|ref|ZP_02865331.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297483|gb|EDS79590.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 105

 Score = 65.8 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 23 VNNFRNIRKEA--KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N + IRK    K+TQ+++   TG ++S++S++E  +   ++D  I LA  LD  +  L
Sbjct: 4  GTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDVEHNRYNPSLDTTIALAEALDVTVNDL 63

Query: 81 L 81
          +
Sbjct: 64 V 64


>gi|119383973|ref|YP_915029.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119373740|gb|ABL69333.1| putative transcriptional regulator, XRE family [Paracoccus
          denitrificans PD1222]
          Length = 85

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    R  RK  +L+Q+E+  R G +  +IS LE+GK   ++  M  LA  LDT L  ++
Sbjct: 16 YARVLRRHRKNMELSQEELAFRAGLSMRYISLLESGKHQPSLGTMKALADALDTSLTAMI 75


>gi|323650445|gb|ADX97299.1| C.ClaIP [Caryophanon latum]
          Length = 101

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 6  RDEPHLSDAILRE-------RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          R   + +D IL +       +  F  N + +R++ +LTQ  +       +S+I  +E G+
Sbjct: 4  RSMKNDNDVILTQEIKRIEFQKAFGKNIKRLRQQQELTQDRLGYLAELDRSYIGGIERGE 63

Query: 59 STINIDNMIILAHTLDTPLWKLL 81
            + + N+  +A  L   +  L 
Sbjct: 64 RNVCLSNIKRIADALKVSVNDLF 86


>gi|127514418|ref|YP_001095615.1| XRE family transcriptional regulator [Shewanella loihica PV-4]
 gi|126639713|gb|ABO25356.1| transcriptional regulator, XRE family [Shewanella loihica PV-4]
          Length = 76

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IR + +L+Q+++       +++IS +E G   + + N++ LA+ L      LL
Sbjct: 8  FGQRLKQIRTQQRLSQEQLAEICELDRTYISGIERGVRNVALINIVKLANGLKVSASSLL 67

Query: 82 K 82
          +
Sbjct: 68 E 68


>gi|308229525|gb|ADO24176.1| C.AflIIIP [Anabaena flos-aquae CCAP 1403/13F]
          Length = 78

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK  KL+Q E+  ++   +++I  +E G+  I++ N+  LA  L      L 
Sbjct: 8  FGIRVRYFRKSLKLSQDELAEKSDLHRTYIGAVERGERNISLMNIFRLADALQVTAKDLF 67


>gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana
          DSM 4359]
 gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana
          DSM 4359]
          Length = 188

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L    
Sbjct: 16 GEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 74


>gi|83944721|ref|ZP_00957087.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83851503|gb|EAP89358.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 75

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N +  R++A L+Q  + +R G  ++ IS +E G+  + I  +  +A  LD    
Sbjct: 4  REVFGANLQYFREKAGLSQAALADRMGVDRAHISAMERGQQNVTIITLWHVAEALDVKPA 63

Query: 79 KLL 81
          +LL
Sbjct: 64 ELL 66


>gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas
          macleodii str. 'Deep ecotype']
          Length = 175

 Score = 65.4 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + + +R++  ++  ++    G A+S +S LE G     +D +  LA  LD P  +L
Sbjct: 8  ILGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQL 67

Query: 81 LKP 83
          ++P
Sbjct: 68 VQP 70


>gi|258591602|emb|CBE67903.1| conserved protein of unknown function [NC10 bacterium 'Dutch
          sediment']
          Length = 71

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R    ++Q+E+  R G  ++++  +E G+  I + N++  A  LD P+  L+
Sbjct: 9  FGQKVRQRRLSLAISQEELAERAGVHRTYVGMIERGEKNITLRNIVKFAKALDMPVHNLM 68

Query: 82 K 82
          K
Sbjct: 69 K 69


>gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 459

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R+   L+Q+E+ +  G ++  +S+ E  +S+ + DN+I LA      L +L+
Sbjct: 5  VAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAESSPDTDNLIALAKLYGMTLDELV 64


>gi|224541773|ref|ZP_03682312.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525300|gb|EEF94405.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM
          15897]
          Length = 68

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +  ++Q+E+  R   ++++IS++E G   +++  +   A  L   L +L 
Sbjct: 7  FGMRIKELRVQQGISQEELGFRCHLSKNYISDVERGTRNVSLKAIDQFAKGLGITLKELF 66


>gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402]
 gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402]
 gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 242

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F +N    RK+  L+Q+E+  R G ++  +S+ E+G+ST  ++ +I +A      L +
Sbjct: 1  MMFNDNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFGISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|319937771|ref|ZP_08012174.1| transcriptional regulator Cro/CI family protein [Coprobacillus
          sp. 29_1]
 gi|319807206|gb|EFW03820.1| transcriptional regulator Cro/CI family protein [Coprobacillus
          sp. 29_1]
          Length = 75

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    ++Q+E+  R   +++++S++E G   + +  +   A  L  P+  L 
Sbjct: 8  FGRRVKELRLIQNISQEELAFRCQLSKNYVSDVERGTRNVTLKVVEKFAQGLKVPVHILF 67

Query: 82 K 82
          +
Sbjct: 68 R 68


>gi|161870051|ref|YP_001599220.1| transcriptional regulator [Neisseria meningitidis 053442]
 gi|161595604|gb|ABX73264.1| transcriptional regulator [Neisseria meningitidis 053442]
          Length = 117

 Score = 65.4 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 30 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 89

Query: 79 KLLKP 83
          +LL P
Sbjct: 90 QLLLP 94


>gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM
          17241]
 gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM
          17241]
          Length = 110

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R IRK   L+Q+ +  R G + + +S +ETG + +++  ++ LA  LD 
Sbjct: 7  GQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALDV 59


>gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8]
 gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 176

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    LTQ+E+  RT  ++S+IS+LE+ K++ +ID +  +   L T L    
Sbjct: 4  GEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKHFF 62


>gi|293603331|ref|ZP_06685759.1| type I restriction-modification system S subunit [Achromobacter
          piechaudii ATCC 43553]
 gi|292818241|gb|EFF77294.1| type I restriction-modification system S subunit [Achromobacter
          piechaudii ATCC 43553]
          Length = 85

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 1  MPRRKRDEPHLSDAILR--ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M  R +    +S+   +   +++F  N R IRKE +LTQ+++  R G   +++S +E G+
Sbjct: 1  MGARDKKNCGMSNPTQKYDAQVLFAANMRRIRKEKQLTQEQVAERAGLHPNYVSSVERGE 60

Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83
            ++I N+  +A  L   + +L+ P
Sbjct: 61 RNLSIANIARIAAALGVTMAELVTP 85


>gi|91778552|ref|YP_553760.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91691212|gb|ABE34410.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 91

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+  LL
Sbjct: 8  FGATVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEHLL 67

Query: 82 KP 83
           P
Sbjct: 68 TP 69


>gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC
          25986]
 gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC
          25986]
          Length = 238

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               ++R+    +Q+ +  + G ++  +S+ E  +S+ + +N+I LA      L +LL 
Sbjct: 6  AQRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAESSPDTENLISLAKLYGVSLDELLN 65

Query: 83 P 83
          P
Sbjct: 66 P 66


>gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205]
 gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205]
          Length = 183

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R + +L+Q+E+  R G ++  I+ LETG   I++  +  +A+ LD    +L+
Sbjct: 11 VGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIANALDVNFKQLV 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|87198393|ref|YP_495650.1| XRE family transcriptional regulator [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87134074|gb|ABD24816.1| transcriptional regulator, XRE family [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 76

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N +  R+ A L+Q EI  R G  ++++S +E G     + ++  +A  L+    
Sbjct: 4  RKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVRPV 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 ALLE 67


>gi|83749268|ref|ZP_00946267.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551]
 gi|207725182|ref|YP_002255578.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2]
 gi|207743555|ref|YP_002259947.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609]
 gi|83724049|gb|EAP71228.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551]
 gi|206590416|emb|CAQ37378.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2]
 gi|206594954|emb|CAQ61881.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609]
          Length = 113

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R    P     I           +  R  A  +Q+ +       +++IS +E G +  +
Sbjct: 8  KRPDSSPSHPAPISVA---LGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPS 64

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          ++ +  + H L   L +L  P
Sbjct: 65 VETLANICHCLGVTLSELFAP 85


>gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 71

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R +R+E+ LTQ+++   TG  +S+++++E G     ID M  +A  L   L 
Sbjct: 6  RKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65

Query: 79 KLLK 82
          +L +
Sbjct: 66 QLFE 69


>gi|209516038|ref|ZP_03264898.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209503498|gb|EEA03494.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 78

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
              D  LR R+    + R +R E  ++Q+ +  + GF ++++S +E   + I +DN+  
Sbjct: 6  SKDIDPYLRRRL--AEHVRRLRLEKGISQELLSVQCGFHRTYVSHIERAATNITLDNLQK 63

Query: 69 LAHTLDTPLWKLL 81
          LA  L     +LL
Sbjct: 64 LALGLGVDPAELL 76


>gi|169351502|ref|ZP_02868440.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM
          1552]
 gi|169291724|gb|EDS73857.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM
          1552]
          Length = 73

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +  ++Q+E+  R G ++++IS++E G   I++ ++  +A  L   + +L 
Sbjct: 11 FGQRVKELRLKQNISQEELAFRCGLSKNYISDVERGTRNISLKSIEKIADGLAIRIKELF 70

Query: 82 K 82
          +
Sbjct: 71 E 71


>gi|304320305|ref|YP_003853948.1| putative transcriptional regulator [Parvularcula bermudensis
          HTCC2503]
 gi|303299207|gb|ADM08806.1| putative transcriptional regulator [Parvularcula bermudensis
          HTCC2503]
          Length = 79

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R I   N R  R E  L+Q E+  R   + ++I  +E  +++++ID +  +A  L   L
Sbjct: 3  ARDIVARNVRKRRAELGLSQDEVGARADSSGNYIGMIERSETSVSIDMLADIAEVLGVSL 62

Query: 78 WKLLKP 83
            L+ P
Sbjct: 63 RDLVDP 68


>gi|167725601|ref|ZP_02408837.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei DM98]
          Length = 83

 Score = 65.0 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R    L+Q+E+    G  +++IS++E  +  +++DN+  LA  LD    
Sbjct: 18 RDVLAYNIRASRVAKSLSQEELGFAAGLDRTFISQVERARVNVSVDNIERLAIALDVDPA 77

Query: 79 KLLK 82
          +L +
Sbjct: 78 QLFE 81


>gi|295107606|emb|CBL05149.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 83

 Score = 65.0 bits (157), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R     +   +RK  +++QK++   +   + ++SE+E G S I+++ +  +A  L  P 
Sbjct: 6  KRRQLGQHIVEMRKAQRISQKQLALMSDINKGYLSEIENGISNISVNKLFRIADALGVPP 65

Query: 78 WKLL 81
            L 
Sbjct: 66 MDLF 69


>gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 68

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     R+ RK   LTQKE+  + G ++S +++ E+GK  + ID ++ +A+ L     
Sbjct: 5  KQITSTQIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFS 64

Query: 79 KLL 81
           LL
Sbjct: 65 TLL 67


>gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 179

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   N  RN+R++  LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T    
Sbjct: 1  MQIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSPSD 60

Query: 80 LLK 82
            K
Sbjct: 61 FFK 63


>gi|297620902|ref|YP_003709039.1| putative transcriptional regulator [Waddlia chondrophila WSU
          86-1044]
 gi|297376203|gb|ADI38033.1| putative transcriptional regulator [Waddlia chondrophila WSU
          86-1044]
          Length = 76

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D IL +   F    RN+R    LTQ+++  R GF  ++I  +E  +   ++ ++  L+  
Sbjct: 8  DPILVD---FAAKVRNMRHSIPLTQEQLAERAGFHVNYIGGIERAERNPSLTSLCSLSKA 64

Query: 73 LDTPLWKLL 81
          L  PL +LL
Sbjct: 65 LGCPLKELL 73


>gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 187

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R    L+   +  R G  +  +SELE G     +  +  LA+TL  P+ 
Sbjct: 7  RAAVGERLRSARTAHGLSVGALAARAGIGKGSLSELENGSRNPTLSTLYALANTLGLPVS 66

Query: 79 KLL 81
           LL
Sbjct: 67 HLL 69


>gi|121594174|ref|YP_986070.1| XRE family transcriptional regulator [Acidovorax sp. JS42]
 gi|120606254|gb|ABM41994.1| transcriptional regulator, XRE family [Acidovorax sp. JS42]
          Length = 86

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP R    P    A    +++F    R  R+   LTQ+ +  R     +++S +E G+  
Sbjct: 1  MPSRHPKAPSKEKA----QVVFGATLRGFREAQALTQEALAERADLHTNYVSSVERGERN 56

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          +++ N++ LA+ LD  +  LL+P
Sbjct: 57 LSLHNIVRLAYALDMEVSALLRP 79


>gi|325830940|ref|ZP_08164293.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1]
 gi|325487102|gb|EGC89547.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1]
          Length = 77

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ +    +++R E  L+Q+    R G + ++++++E G   ++IDNM  +A        
Sbjct: 11 RVQYGLRIKDLRDERGLSQRGFAARIGMSPTYLADVERGARNVSIDNMKRIADGFGVTFH 70

Query: 79 KL 80
          ++
Sbjct: 71 EM 72


>gi|29337279|gb|AAD39136.2|AF123569_4 NmeSIC [Neisseria meningitidis]
          Length = 71

 Score = 64.6 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ R     +Q+E+  + G  +++I  +E G+  I++ N+ +LA +    + +L+
Sbjct: 8  FGKRVKHYRLLNGWSQEELAEKVGLHRTYIGSVERGERNISLLNISLLAKSFSINISELV 67

Query: 82 K 82
          +
Sbjct: 68 E 68


>gi|167830187|ref|ZP_02461658.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 9]
          Length = 83

 Score = 64.6 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R    L+Q+E+    G  +++IS++E  +  ++IDN+  LA  LD    
Sbjct: 18 RDVLAYNIRANRVAKSLSQEELGFAAGLDRTFISQVERARVNVSIDNVERLAIALDVEPV 77

Query: 79 KLLK 82
          +L +
Sbjct: 78 RLFE 81


>gi|296284442|ref|ZP_06862440.1| transcriptional regulator, XRE family protein [Citromicrobium
          bathyomarinum JL354]
          Length = 86

 Score = 64.6 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +R R +   N + +R    ++Q+++       +S++  +E      ++D +  +A  L  
Sbjct: 1  MRGRELVGKNIKRLRVAQGISQEQLAFDASIDRSFLGGIERCDENPSVDTLDKIASVLSV 60

Query: 76 PLWKLLKP 83
           + +L  P
Sbjct: 61 NIAELFVP 68


>gi|293371781|ref|ZP_06618191.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CMC 3f]
 gi|292633233|gb|EFF51804.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CMC 3f]
          Length = 70

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    R  R    L+Q+++ N     ++++ ++E GK  +++     +A  L+ PL K
Sbjct: 5  ELFGIRVREQRIALNLSQEKLANIADIDRTYLPDIENGKRNVSLAVAEKIAKALNVPLTK 64

Query: 80 LLK 82
          LL+
Sbjct: 65 LLE 67


>gi|282892584|ref|ZP_06300857.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281497708|gb|EFB40077.1| hypothetical protein pah_c272o023 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 84

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+   ++Q+E+  R+G  ++++  +E G+  ++I+N+ ILA  L+     L+
Sbjct: 17 FGELVRQKRQALGISQEELAFRSGLHRTYVGSVERGERNLSIENVFILAKALECHPRDLI 76


>gi|126651901|ref|ZP_01724102.1| Transcriptional regulator, MerR family protein [Bacillus sp.
          B14905]
 gi|126591369|gb|EAZ85477.1| Transcriptional regulator, MerR family protein [Bacillus sp.
          B14905]
          Length = 119

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +N + IRK  KLTQ+E+  + G   S+++ +E G   I I  +  +   L+     
Sbjct: 6  KLVGSNIKEIRKLKKLTQEELAEKCGLQTSYLAGVERGDRNITIQTLDKIIDGLEETPSN 65

Query: 80 LL 81
          + 
Sbjct: 66 IF 67


>gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 91]
          Length = 113

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            L +R  F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA   
Sbjct: 21 TALVQR--FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAF 78

Query: 74 DTPLWKLLKP 83
            P+ +LL P
Sbjct: 79 GVPIARLLSP 88


>gi|224538886|ref|ZP_03679425.1| hypothetical protein BACCELL_03782 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224519493|gb|EEF88598.1| hypothetical protein BACCELL_03782 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 81

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+E  ++Q+++       +++I  LE  +    I ++I +A  L+ PL KLL
Sbjct: 15 LGKRIKFFREEKGVSQEQLAAICNVHRTYIGMLERAERNATIISIIKVAKGLNIPLVKLL 74

Query: 82 K 82
          +
Sbjct: 75 E 75


>gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 67

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R     N R  R   +++Q+E+    G  Q +IS +E G    ++D +  +A  L  
Sbjct: 1  MPIRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGTRNPSMDLLYNIAGALKC 60

Query: 76 PLWKLL 81
          P+ +L+
Sbjct: 61 PVKRLV 66


>gi|291544390|emb|CBL17499.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 470

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            +L  R   V      R E  L+Q+++  R G  +S I  +E G   +++D MI +A  
Sbjct: 4  KELLAARQSIVQKLTQARLEKGLSQEQLAKRIGTQRSNICRIEKGTQNLSLDLMIKIAEA 63

Query: 73 LDTPLWKLLK 82
          LD  +  +L+
Sbjct: 64 LDKDVSVMLE 73


>gi|239996716|ref|ZP_04717240.1| transcriptional regulator, Cro/CI family protein [Alteromonas
          macleodii ATCC 27126]
          Length = 175

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + + +R++  ++  ++    G A+S +S LE G     +D +  LA  LD P  +L
Sbjct: 8  ILGRHLQKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQL 67

Query: 81 LKP 83
          ++P
Sbjct: 68 VQP 70


>gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA]
 gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++     R +R+E+ LTQ+++   TG  +S+++++E G     ID M  +A  L   L 
Sbjct: 6  RILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGLGVTLG 65

Query: 79 KLLK 82
          +L +
Sbjct: 66 QLFE 69


>gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 76

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +R E  ++Q+E  N  G ++S+  E+ETGK  +   N+  +A  L   L 
Sbjct: 7  RSKIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETGKRNVAAVNLEKIAKGLGVSLA 66

Query: 79 KLL 81
          +  
Sbjct: 67 EFF 69


>gi|239813615|ref|YP_002942525.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800192|gb|ACS17259.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 90

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R   +LTQ+++ + +    ++IS++E G   +++ N+  LAH L     +LL
Sbjct: 18 FGVAVRRLRDARELTQEQLADFSDMHVTYISQIERGLKNVSLFNIHRLAHALSVAPSELL 77


>gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 90

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +RK+  LTQ+E+  R    Q++I  +E G+  I++  +  +A  L+    K+
Sbjct: 1  MVGENIRILRKKRGLTQEELAERINLQQAYIGGIERGERNISMLTLQKIAVGLEISPDKI 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          T2]
 gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis HIP11704]
 gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          X98]
 gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          T2]
 gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis HIP11704]
 gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          X98]
 gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
          Length = 180

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62


>gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 179

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R +R E  LTQ+E+ +R   ++ +IS++E   ++ +I  ++ L   L T L    
Sbjct: 4  GNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKDFF 62


>gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 186

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R +R E  LTQ+E+ +R   ++ +IS++E   ++ +I  ++ L   L T L    
Sbjct: 11 GNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKDFF 69


>gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1]
 gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1]
          Length = 180

 Score = 64.2 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 62


>gi|312197902|ref|YP_004017963.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311229238|gb|ADP82093.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 197

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R  R+E KL+  E+  R+G ++  +S++E G     ID++  +A  L   + +
Sbjct: 6  KLVARNVRRFREERKLSLGELARRSGLSKQTLSKIEQGTGNPTIDSIEAIADALHLTMRR 65

Query: 80 LLK 82
          L+ 
Sbjct: 66 LVT 68


>gi|110634674|ref|YP_674882.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285658|gb|ABG63717.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1]
          Length = 100

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F +N R  R  A L+Q+ +  R G  ++ +S +E G   + +  +   A  +     
Sbjct: 4  RELFGSNLRRYRLAAGLSQEAVAERIGADRAHVSAMERGVQNVTLLTLWHTAQAVGVKPA 63

Query: 79 KLL 81
           LL
Sbjct: 64 DLL 66


>gi|13475102|ref|NP_106666.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025853|dbj|BAB52452.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 71

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N R +R++ KL+Q+ + +  G  +++IS LE       ID +  LA  L+    
Sbjct: 4  REVFARNLRRLREKKKLSQEALAHEAGVDRTYISALERSVYAATIDMVEKLATVLEVEPA 63

Query: 79 KLLKP 83
           LL P
Sbjct: 64 TLLDP 68


>gi|170754823|ref|YP_001782088.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169120035|gb|ACA43871.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 81

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 33/51 (64%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N + IR+E  ++Q ++    G ++S++SE+E+GK T ++D +  +A  L+ 
Sbjct: 4  NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEV 54


>gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO]
 gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,230,933]
 gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,502]
 gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,501]
 gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,410]
 gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,408]
 gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO]
 gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecium C68]
 gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecium TC 6]
 gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecium D344SRF]
 gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1039]
 gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1162]
 gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1071]
 gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E980]
 gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1636]
 gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1679]
 gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          U0317]
 gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO]
 gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,230,933]
 gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,502]
 gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,501]
 gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,410]
 gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,231,408]
 gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecium C68]
 gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecium TC 6]
 gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecium D344SRF]
 gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1071]
 gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1636]
 gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1679]
 gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          U0317]
 gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1039]
 gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1162]
 gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E980]
 gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082]
          Length = 180

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 62


>gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC
          9812]
 gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC
          9812]
          Length = 114

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    + +R E KL+Q  +  +   ++  IS+ ETG+ST +++N+I +A  L   L +
Sbjct: 5  MIFSTQLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSLDE 64

Query: 80 LL 81
          L+
Sbjct: 65 LV 66


>gi|325169000|ref|YP_004285747.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325052813|dbj|BAJ83149.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 134

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 3  RRKRDEPHLSDAIL--RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +R  +   +   +L   ER +F  N R  R    L+  ++ N     +++I ++E GK  
Sbjct: 17 KRTSELSAIDGRVLKAPERFVFGANVRAGRNALGLSLTQMANLIDADRAYIGKVEHGKIN 76

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          ++ID M  +A      L++LL+P
Sbjct: 77 VSIDRMSSIAELFRVHLYELLQP 99


>gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,141,733]
 gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium Com12]
 gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium Com15]
 gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium 1,141,733]
 gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium Com12]
 gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          faecium Com15]
          Length = 180

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 62


>gi|83309581|ref|YP_419845.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82944422|dbj|BAE49286.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 76

 Score = 64.2 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N R +R +  L+Q E+      ++S++++LETGK   ++  +  LA  L+    
Sbjct: 8  RELFATNLRRLRHDKGLSQDELACDAEMSRSYLAQLETGKYHASLKIIGRLADVLEVDPV 67

Query: 79 KLLK 82
          + LK
Sbjct: 68 EFLK 71


>gi|162148576|ref|YP_001603037.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|161787153|emb|CAP56745.1| putative transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 77

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N R +R+ A L+Q+ +  R G  +++IS +ETG+    + ++   +  L+    
Sbjct: 4  RGLFGANVRRLRRAAGLSQEVLAERMGVDRAYISWIETGRQNATLLSLWHASQALNVRPA 63

Query: 79 KLL 81
           LL
Sbjct: 64 ALL 66


>gi|316932216|ref|YP_004107198.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599930|gb|ADU42465.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 73

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R + KLTQ+E+ +R G +  ++  +E G  + ++  +  +A  L+    
Sbjct: 4  KEVMARNLRRLRHDKKLTQEELADRAGLSMRYVGAIERGDVSASVTVLGQIADALEIEPG 63

Query: 79 KLLK 82
          +LLK
Sbjct: 64 ELLK 67


>gi|261380000|ref|ZP_05984573.1| DNA-binding protein [Neisseria subflava NJ9703]
 gi|284797205|gb|EFC52552.1| DNA-binding protein [Neisseria subflava NJ9703]
          Length = 98

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P L D     R I   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  
Sbjct: 9  PSLPDP-QDLRAIIAYNMRLYRVNHGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEK 67

Query: 69 LAHTLDTPLWKLLKP 83
          +A  L    +KLL P
Sbjct: 68 IASALKIAPYKLLLP 82


>gi|326404809|ref|YP_004284891.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325051671|dbj|BAJ82009.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 73

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R +R E  ++Q+E+ +R    ++++  +E  +    +D +  LA  L     
Sbjct: 4  REILARNMRRVRAERGISQEELAHRAKLNRNYVGMIEREEHAATVDTIDQLASALGVSPM 63

Query: 79 KLLKP 83
           LL P
Sbjct: 64 DLLDP 68


>gi|168207478|ref|ZP_02633483.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170661169|gb|EDT13852.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 93

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 23 VNNFRNIRKEA--KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N + IRK    K+TQ+++   TG ++S++S++E  K   ++D  I L++ L   L +L
Sbjct: 4  GTNLQRIRKAKDPKITQQDLAKATGLSRSYLSDIEHNKYNPSLDTTIALSNALGVTLNEL 63


>gi|167924589|ref|ZP_02511680.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei BCC215]
          Length = 74

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK    +Q+++   +G A+S++  +E G+  I + N+ +LA TL+     +
Sbjct: 1  MFGKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVAPSDM 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|229526959|ref|ZP_04416356.1| transcriptional regulator Cro/CI family [Vibrio cholerae
          12129(1)]
 gi|229335571|gb|EEO01051.1| transcriptional regulator Cro/CI family [Vibrio cholerae
          12129(1)]
          Length = 70

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RKE  L+Q+ + +  G  +S++  +E G   I +  +  ++  L   +  L+
Sbjct: 9  FGEKVRQTRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEALRVSVSDLI 68


>gi|153932832|ref|YP_001384724.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936860|ref|YP_001388245.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152928876|gb|ABS34376.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932774|gb|ABS38273.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 81

 Score = 63.9 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 33/51 (64%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N + IR+E  ++Q ++    G ++S++SE+E+GK T ++D +  +A  L+ 
Sbjct: 4  NLKKIREEKNISQSKLAILAGISRSYVSEIESGKKTPSLDMLERIAEALEV 54


>gi|158520953|ref|YP_001528823.1| XRE family transcriptional regulator [Desulfococcus oleovorans
          Hxd3]
 gi|158509779|gb|ABW66746.1| transcriptional regulator, XRE family [Desulfococcus oleovorans
          Hxd3]
          Length = 84

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F N  + IRK    +Q+E+   +G+ +++IS LE GK + ++  +  LA TL     +
Sbjct: 16 ELFGNALKQIRKRKGFSQEELGLESGYHRTYISLLERGKKSPSLKTIFRLAETLQVKPSE 75

Query: 80 LLK 82
          L+K
Sbjct: 76 LIK 78


>gi|330874491|gb|EGH08640.1| putative regulatory protein [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
          Length = 74

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F      IRK    +Q+ +   +G A+S++  +E G+  I + N+  LA  L     
Sbjct: 6  RTAFGLRLIEIRKAKGWSQERLALESGLARSYLGGVERGQRNIALLNIYKLAEALAVTPG 65

Query: 79 KLLKP 83
           L+ P
Sbjct: 66 SLMDP 70


>gi|197103228|ref|YP_002128606.1| transcriptional regulator, XRE family [Phenylobacterium zucineum
          HLK1]
 gi|196480504|gb|ACG80031.1| transcriptional regulator, XRE family [Phenylobacterium zucineum
          HLK1]
          Length = 73

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R  R EA L+Q+ +    G  ++++S LE G+    I  +   A  L     
Sbjct: 4  RTIVGTNVRRYRGEAGLSQEGLAELMGVDRAYVSGLELGRRNPTILTLWHTAMALKIRPS 63

Query: 79 KLLK 82
          +LL+
Sbjct: 64 ELLE 67


>gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius
          ATCC 35311]
 gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine
          transporter [Melissococcus plutonius ATCC 35311]
          Length = 180

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RN+R +  LTQ+E+  RT   + +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLSSPSMETFFTILEVLGVSPEEFF 62


>gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans
          SSM1]
 gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter
          desulfuricans SSM1]
          Length = 178

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M +    R IRK   +T +++  +TGF +S+IS++E GK++ +I ++  +   L   + +
Sbjct: 1  MSYGAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISE 60

Query: 80 LLK 82
          L +
Sbjct: 61 LFE 63


>gi|114327259|ref|YP_744416.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1]
 gi|114315433|gb|ABI61493.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1]
          Length = 73

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R   ++TQ+E+ +R G +  +I  +E    +++I  +  +A  L     
Sbjct: 4  KEVMAVNVRRVRHAREMTQEELADRAGLSTRYIGAIERADVSVSITVLGRIAEALGVEPG 63

Query: 79 KLLK 82
           LL 
Sbjct: 64 TLLT 67


>gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 242

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                +R+E   +Q+E+  R G ++  +S+ E  +S+ +  N+I LA      L  LL+
Sbjct: 16 AQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVSLDDLLR 75


>gi|78187740|ref|YP_375783.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78167642|gb|ABB24740.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 390

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R     +Q+++    G  +++I  +E G+  I + N   +A+ L   L  +
Sbjct: 12 LLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHVTLSDI 71

Query: 81 L 81
          L
Sbjct: 72 L 72


>gi|240948259|ref|ZP_04752645.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297298|gb|EER47839.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
          Length = 75

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 18 ERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          ER +F+ N     +  R    L+Q+E+  R G  +++I  +E  +  I + N+ ++A  L
Sbjct: 5  ERELFLKNLGLSIKLERVRRGLSQEELAERAGLHRTYIGMVERAERNITVVNLALIAKAL 64

Query: 74 DTPLWKLL 81
             +  LL
Sbjct: 65 GVSIGSLL 72


>gi|150377506|ref|YP_001314101.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150032053|gb|ABR64168.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 74

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  N R +R     +Q+E+ +R    ++++S LE  + +  ID +  LA  L     
Sbjct: 4  RDIFALNLRTLRHARGYSQEELADRANIHRTYVSALERCQYSATIDMVASLAKVLGVDAA 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 ALLR 67


>gi|328947447|ref|YP_004364784.1| hypothetical protein Tresu_0542 [Treponema succinifaciens DSM
          2489]
 gi|328447771|gb|AEB13487.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 71

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  R +R E   +Q++  + T   ++++S LE GK   +   ++ +A +L+  +  L 
Sbjct: 12 FGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERGKRNPSYLILLKIAKSLNISVKDLF 71


>gi|92112332|ref|YP_572260.1| XRE family transcriptional regulator [Chromohalobacter salexigens
          DSM 3043]
 gi|91795422|gb|ABE57561.1| transcriptional regulator, XRE family with cupin sensor protein
          [Chromohalobacter salexigens DSM 3043]
          Length = 190

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R+ A L+Q+ +  R G ++  +  +E G   +++  +  LA  L    + L+
Sbjct: 18 VAANVRRLRQGASLSQQALAERAGVSRRMLVNIEKGDVNVSLSTLDRLAEALGVLFYALV 77

Query: 82 KP 83
          +P
Sbjct: 78 QP 79


>gi|325971067|ref|YP_004247258.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324026305|gb|ADY13064.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 107

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N +  R++  LTQ ++  + G + S+++E+ET +   +   +  ++  LD P W  
Sbjct: 10 IFARNLKERRRKLSLTQAQLAEKIGVSTSFVTEIETSRKAPSFATIEKISAALDVPCWTF 69

Query: 81 L 81
           
Sbjct: 70 F 70


>gi|194098577|ref|YP_002001639.1| putative transcriptional regulator [Neisseria gonorrhoeae
          NCCP11945]
 gi|254493745|ref|ZP_05106916.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|260440556|ref|ZP_05794372.1| putative transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|268594802|ref|ZP_06128969.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268598958|ref|ZP_06133125.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268601311|ref|ZP_06135478.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268603637|ref|ZP_06137804.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268682112|ref|ZP_06148974.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268684322|ref|ZP_06151184.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268686580|ref|ZP_06153442.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291043861|ref|ZP_06569577.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|293399073|ref|ZP_06643238.1| transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|193933867|gb|ACF29691.1| putative transcriptional regulator [Neisseria gonorrhoeae
          NCCP11945]
 gi|226512785|gb|EEH62130.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|268548191|gb|EEZ43609.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268583089|gb|EEZ47765.1| transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|268585442|gb|EEZ50118.1| transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|268587768|gb|EEZ52444.1| transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|268622396|gb|EEZ54796.1| transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|268624606|gb|EEZ57006.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679]
 gi|268626864|gb|EEZ59264.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035]
 gi|291012324|gb|EFE04313.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|291610487|gb|EFF39597.1| transcriptional regulator [Neisseria gonorrhoeae F62]
 gi|317164249|gb|ADV07790.1| putative transcriptional regulator [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 106

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLLP 83


>gi|209885576|ref|YP_002289433.1| hypothetical protein OCAR_6455 [Oligotropha carboxidovorans OM5]
 gi|209873772|gb|ACI93568.1| conserved domain protein [Oligotropha carboxidovorans OM5]
          Length = 71

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R + KLTQ+E+  R+G +  ++  +E G  + ++  +  +A  L     
Sbjct: 4  KEVMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSVLGKVADALGVDPC 63

Query: 79 KLLK 82
           L++
Sbjct: 64 DLIR 67


>gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum]
 gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum]
          Length = 81

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 17 RERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           ++ I        R++RK   ++Q+E+ + +G  ++++S +E G+  I++ N++ LA  L
Sbjct: 3  PDKKILIQLGGRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVL 62

Query: 74 DTPLWKLLK 82
                L+ 
Sbjct: 63 GVDAGDLVT 71


>gi|59801211|ref|YP_207923.1| putative transcriptional regulator [Neisseria gonorrhoeae FA
          1090]
 gi|239998956|ref|ZP_04718880.1| putative transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|240014132|ref|ZP_04721045.1| putative transcriptional regulator [Neisseria gonorrhoeae DGI18]
 gi|240016567|ref|ZP_04723107.1| putative transcriptional regulator [Neisseria gonorrhoeae FA6140]
 gi|240112875|ref|ZP_04727365.1| putative transcriptional regulator [Neisseria gonorrhoeae MS11]
 gi|240115631|ref|ZP_04729693.1| putative transcriptional regulator [Neisseria gonorrhoeae PID18]
 gi|240117924|ref|ZP_04731986.1| putative transcriptional regulator [Neisseria gonorrhoeae PID1]
 gi|240121694|ref|ZP_04734656.1| putative transcriptional regulator [Neisseria gonorrhoeae
          PID24-1]
 gi|240123483|ref|ZP_04736439.1| putative transcriptional regulator [Neisseria gonorrhoeae PID332]
 gi|240125727|ref|ZP_04738613.1| putative transcriptional regulator [Neisseria gonorrhoeae
          SK-92-679]
 gi|240128182|ref|ZP_04740843.1| putative transcriptional regulator [Neisseria gonorrhoeae
          SK-93-1035]
 gi|59718106|gb|AAW89511.1| putative transcriptional regulator [Neisseria gonorrhoeae FA
          1090]
          Length = 105

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77

Query: 79 KLLKP 83
          +LL P
Sbjct: 78 QLLLP 82


>gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e]
          Length = 88

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+ +LL
Sbjct: 8  FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 86

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RKE  LTQ+ + +RTG  +++I+ +ETGK  I++ N+  LA  L   L  L 
Sbjct: 15 FGRAIQQRRKELNLTQENLAHRTGLDRTYIANIETGKINISLRNIEKLAKGLSISLSDLF 74

Query: 82 K 82
          K
Sbjct: 75 K 75


>gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus EC20]
 gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus EC20]
          Length = 201

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R +  LTQ+E+  RT   + +IS+LE   S+ +++    +   L     +  +
Sbjct: 25 GEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 84


>gi|73540702|ref|YP_295222.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Ralstonia eutropha JMP134]
 gi|72118115|gb|AAZ60378.1| Helix-turn-helix motif [Ralstonia eutropha JMP134]
          Length = 129

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  +   +RK    +Q+ +   +G A+S++S +E GK  + + N+ +LA TL  P  ++L
Sbjct: 9  FGLHLARLRKRRGWSQETLSLESGLARSYLSGIERGKRNLALLNICMLADTLGVPPSEML 68


>gi|145219415|ref|YP_001130124.1| XRE family transcriptional regulator [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205579|gb|ABP36622.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides
          DSM 265]
          Length = 379

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R     +Q+++    G  +++I  +E G+  I + N   +A+ L   L  +
Sbjct: 12 LLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHITLADI 71

Query: 81 L 81
          L
Sbjct: 72 L 72


>gi|326402562|ref|YP_004282643.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325049423|dbj|BAJ79761.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 94

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  N R+ R  A L+Q+ +  R G  ++ +S +E G   + +  +  LA  L     
Sbjct: 4  RRIFGANLRHYRLAAGLSQEAVAERMGVDRAHVSSMERGSQNVTLITLWHLADALKIQPA 63

Query: 79 KLL 81
           LL
Sbjct: 64 DLL 66


>gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator
          MP104C]
 gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator
          MP104C]
          Length = 196

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+E+ L+Q+ +  + G +  ++S++E G+++ ++ ++  LA  L     +LL
Sbjct: 4  VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLL 63

Query: 82 K 82
          +
Sbjct: 64 Q 64


>gi|152851|gb|AAA26568.1| C protein [Serratia marcescens]
          Length = 84

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N R+ R    L+Q+++   +G  +++I  +E  +  + +  +IIL   L+T + 
Sbjct: 12 KEILAENVRSYRNINNLSQEQLAEISGLHRTYIGSVERKERNVTLSTLIILRKALNTSVP 71

Query: 79 KLLK 82
          KLL 
Sbjct: 72 KLLT 75


>gi|329888372|ref|ZP_08266970.1| pvuIIC [Brevundimonas diminuta ATCC 11568]
 gi|328846928|gb|EGF96490.1| pvuIIC [Brevundimonas diminuta ATCC 11568]
          Length = 73

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R    ++Q+E+  R    +S++S +E G    +++ +  LA  L      L
Sbjct: 6  LLGRNIRRHRNALGISQEELAFRADMKRSYVSGIELGSRKPSVEALERLAIALGVDPRIL 65

Query: 81 LKP 83
          L+P
Sbjct: 66 LEP 68


>gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum]
 gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum]
          Length = 81

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 17 RERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           ++ I        R++RK   ++Q+E+ + +G  ++++S +E G+  I++ N++ LA  L
Sbjct: 3  PDKKILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLLSLAGVL 62

Query: 74 DTPLWKLLK 82
                L+ 
Sbjct: 63 GVDAGDLVT 71


>gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT]
 gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT]
          Length = 147

 Score = 63.5 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             N R  RKE  LTQ E+  +T  A + I   E G     +  +  +A  L  P+++L
Sbjct: 3  VGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPVYRL 61


>gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330]
          Length = 213

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 37 GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEEFF 95


>gi|121634901|ref|YP_975146.1| transcriptional regulator [Neisseria meningitidis FAM18]
 gi|261401339|ref|ZP_05987464.1| DNA-binding protein [Neisseria lactamica ATCC 23970]
 gi|296314425|ref|ZP_06864366.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768]
 gi|120866607|emb|CAM10358.1| putative transcriptional regulator [Neisseria meningitidis FAM18]
 gi|269208625|gb|EEZ75080.1| DNA-binding protein [Neisseria lactamica ATCC 23970]
 gi|296838861|gb|EFH22799.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768]
 gi|309378463|emb|CBX22888.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 106

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLLP 83


>gi|260425441|ref|ZP_05779421.1| conserved domain protein [Citreicella sp. SE45]
 gi|260423381|gb|EEX16631.1| conserved domain protein [Citreicella sp. SE45]
          Length = 76

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R +   N R +R E   +Q+ +    G  ++++S +E  +  I+IDN+  +A  L
Sbjct: 5  PKSPLRDVLARNMRLLRAEKGWSQERLAEEAGLNRTYLSAVERSEQNISIDNLYRVAKGL 64

Query: 74 DTPLWKLLK 82
                LL 
Sbjct: 65 GVDAHTLLT 73


>gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
          Length = 201

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +  D   L DA+L +     +  R +RKE +LT + +    G +   IS++E G    + 
Sbjct: 5  KPNDNKALVDAMLGD---LGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGNPSF 61

Query: 64 DNMIILAHTLDTPLWKLLK 82
            ++ LAH L  P+ +LL+
Sbjct: 62 ATLVQLAHGLQMPIGQLLE 80


>gi|225575186|ref|ZP_03783796.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037594|gb|EEG47840.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM
          10507]
          Length = 89

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN  + R+   +TQ+ +    G  +++IS LE G++   +  M  LA  L   +  L
Sbjct: 15 LFGNNLSHYRRLCGMTQEALGRAVGMNRTYISALEHGRANPTLKLMSTLAIALKVDVGNL 74

Query: 81 LK 82
          L 
Sbjct: 75 LT 76


>gi|322378078|ref|ZP_08052565.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334]
 gi|321281060|gb|EFX58073.1| transcriptional regulator, Cro/CI family [Streptococcus sp. M334]
          Length = 108

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R++R   K+TQ+E+  RT  +  +IS++E     I+++  + +   L+  L     P
Sbjct: 10 NQIRDLRASKKITQQELAERTNLSVPYISQIENNHRNISLETFVKIVDALEVTLSDFFLP 69


>gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA]
 gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA]
 gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 380

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+A L+Q+ +  R G ++  +S+ E  +S+ + DN+I LA      L  LL
Sbjct: 6  AQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDLL 64


>gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 380

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+A L+Q+ +  R G ++  +S+ E  +S+ + DN+I LA      L  LL
Sbjct: 6  AQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSLDDLL 64


>gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 145

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    R IR+    +Q+E+  R G +   IS +E  K   ++D    LA  L  PL 
Sbjct: 2  KDSFGARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVPLQ 61

Query: 79 KLLKP 83
           L  P
Sbjct: 62 VLCDP 66


>gi|160939992|ref|ZP_02087337.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436572|gb|EDP14339.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC
          BAA-613]
          Length = 74

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+   N  R +RKE  L+Q+ +  + G  +++I+ +E GK  ++I ++  +   LD  + 
Sbjct: 8  RIKVGNRIRQLRKELLLSQESLAFKAGLDRTYIASVENGKRNLSIMSLEKIIVALDCSMA 67

Query: 79 KLLK 82
          +  +
Sbjct: 68 EFFE 71


>gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
 gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
          Length = 108

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R +  L+Q+++   +G +   ISE+E G+S  +   M  L   L   + + 
Sbjct: 8  LLGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKEF 67

Query: 81 L 81
           
Sbjct: 68 F 68


>gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          T1]
 gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ATCC 4200]
 gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3]
 gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          DS5]
 gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis Merz96]
 gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis JH1]
 gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          E1Sol]
 gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          Fly1]
 gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis D6]
 gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          AR01/DG]
 gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          T11]
 gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          T1]
 gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ATCC 4200]
 gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3]
 gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          DS5]
 gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis Merz96]
 gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis JH1]
 gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          E1Sol]
 gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          Fly1]
 gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region
          [Enterococcus faecalis D6]
 gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ARO1/DG]
 gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          T11]
 gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76]
 gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
 gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
 gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012]
 gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
 gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
 gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342]
 gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
 gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
 gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
 gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis
          62]
 gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          OG1RF]
          Length = 180

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62


>gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322]
 gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322]
 gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
          Length = 180

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62


>gi|261392524|emb|CAX50079.1| putative HTH-type transcriptional regulator [Neisseria
          meningitidis 8013]
          Length = 106

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLLP 83


>gi|241759247|ref|ZP_04757353.1| transcriptional regulator [Neisseria flavescens SK114]
 gi|241320383|gb|EER56680.1| transcriptional regulator [Neisseria flavescens SK114]
          Length = 98

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P+L D     R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  
Sbjct: 9  PNLPDP-QDLRAVIAYNMRLYRVNHGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEK 67

Query: 69 LAHTLDTPLWKLLKP 83
          +A  L    +KLL P
Sbjct: 68 IASALKIAPYKLLLP 82


>gi|325128248|gb|EGC51133.1| DNA-binding protein [Neisseria meningitidis N1568]
 gi|325134544|gb|EGC57189.1| DNA-binding protein [Neisseria meningitidis M13399]
 gi|325144646|gb|EGC66945.1| DNA-binding protein [Neisseria meningitidis M01-240013]
          Length = 105

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77

Query: 79 KLLKP 83
          +LL P
Sbjct: 78 QLLLP 82


>gi|312888142|ref|ZP_07747725.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311299409|gb|EFQ76495.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 69

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R IR++  ++QK++       +S+I+ +E G+  I+I N+  +A  L   L +L 
Sbjct: 7  VGSRIREIREKNGISQKDLSYTADLDRSYIASVENGQRNISIVNLEKIAKALKVNLSELF 66

Query: 82 K 82
          +
Sbjct: 67 Q 67


>gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 95

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+ +LL
Sbjct: 8  FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67

Query: 82 KP 83
           P
Sbjct: 68 TP 69


>gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 180

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  
Sbjct: 4  GEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQFF 62


>gi|254003130|ref|YP_003052596.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4]
 gi|253987213|gb|ACT52069.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4]
          Length = 77

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R  F    R IR ++  TQ+ +   +G  +S+IS +E G+S+  +D ++ L   LD  L
Sbjct: 4  KRRSFGKILRQIRVQSGFTQEALGLESGIDRSYISLIERGESSPTLDTILQLCTALDISL 63

Query: 78 WKL 80
            L
Sbjct: 64 SYL 66


>gi|167648095|ref|YP_001685758.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350525|gb|ABZ73260.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 78

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 14 AILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           +   R+      N R +RKE  L+Q+ + +  G A +++ ++E G     +D +   A 
Sbjct: 2  PLPPMRLGQALGINVRRLRKERGLSQEALADAVGLAPTYVGQIERGLRNPTLDVVERFAD 61

Query: 72 TLDTPLWKLLK 82
           L      LL+
Sbjct: 62 VLGAEALDLLR 72


>gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
 gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 14]
 gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 9]
 gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei B7210]
 gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 7894]
 gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei NCTC 13177]
 gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei 112]
 gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei BCC215]
 gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
 gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain
          [Burkholderia pseudomallei 1710b]
 gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
          Length = 94

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+ +LL
Sbjct: 8  FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|15677077|ref|NP_274229.1| transcriptional regulator [Neisseria meningitidis MC58]
 gi|218768217|ref|YP_002342729.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|254804990|ref|YP_003083211.1| putative transcriptional regulator [Neisseria meningitidis
          alpha14]
 gi|304387532|ref|ZP_07369721.1| DNA-binding protein [Neisseria meningitidis ATCC 13091]
 gi|313668311|ref|YP_004048595.1| transcriptional regulator [Neisseria lactamica ST-640]
 gi|7226441|gb|AAF41586.1| transcriptional regulator [Neisseria meningitidis MC58]
 gi|121052225|emb|CAM08548.1| putative transcriptional regulator [Neisseria meningitidis Z2491]
 gi|254668532|emb|CBA05943.1| putative transcriptional regulator [Neisseria meningitidis
          alpha14]
 gi|304338419|gb|EFM04540.1| DNA-binding protein [Neisseria meningitidis ATCC 13091]
 gi|308389307|gb|ADO31627.1| putative transcriptional regulator [Neisseria meningitidis
          alpha710]
 gi|313005773|emb|CBN87227.1| putative transcriptional regulator [Neisseria lactamica 020-06]
 gi|319410463|emb|CBY90823.1| putative HTH-type transcriptional regulator [Neisseria
          meningitidis WUE 2594]
 gi|325132224|gb|EGC54918.1| DNA-binding protein [Neisseria meningitidis M6190]
 gi|325198344|gb|ADY93800.1| DNA-binding protein [Neisseria meningitidis G2136]
          Length = 106

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLLP 83


>gi|325138207|gb|EGC60777.1| DNA-binding protein [Neisseria meningitidis ES14902]
 gi|325140561|gb|EGC63082.1| DNA-binding protein [Neisseria meningitidis CU385]
 gi|325142395|gb|EGC64802.1| DNA-binding protein [Neisseria meningitidis 961-5945]
 gi|325204197|gb|ADY99650.1| DNA-binding protein [Neisseria meningitidis M01-240355]
          Length = 105

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77

Query: 79 KLLKP 83
          +LL P
Sbjct: 78 QLLLP 82


>gi|86359863|ref|YP_471754.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
 gi|86283965|gb|ABC93027.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
          Length = 73

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  N +  R    L+Q+E+  R    +++IS LE      +ID +  LA  L+    
Sbjct: 4  REVFARNLKAARLAKGLSQEELAFRADIDRTYISSLERSVYNASIDVVDRLAAILEMEAS 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus
          thermophilus CNRZ1066]
 gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative
          [Streptococcus thermophilus CNRZ1066]
          Length = 75

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+  L+Q++   + G  +++ + +E+GK  +++ N+  +A   D  + +L 
Sbjct: 6  FGKRIKELRKQTGLSQEKFALKIGMDRTYYASIESGKRNVSLKNIEKIASGFDISISQLF 65


>gi|315648369|ref|ZP_07901468.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453]
 gi|329923099|ref|ZP_08278615.1| restriction-modification system control element Bcll
          [Paenibacillus sp. HGF5]
 gi|315276063|gb|EFU39409.1| hypothetical protein PVOR_24004 [Paenibacillus vortex V453]
 gi|328941872|gb|EGG38157.1| restriction-modification system control element Bcll
          [Paenibacillus sp. HGF5]
          Length = 78

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    +NIRKE K++Q+E+  R+   +++IS LE G     +++++ +A  LD    +L
Sbjct: 6  IFGQVLKNIRKEQKVSQEELAFRSNLDRTYISMLERGIHQPTLNSLLAIAAALDMKAAEL 65

Query: 81 L 81
          +
Sbjct: 66 V 66


>gi|268596876|ref|ZP_06131043.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268550664|gb|EEZ45683.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
          Length = 106

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLPP 83


>gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 82

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           I     I     R  R +A L Q+++    G   +++S++E G   IN+ N++  A  L
Sbjct: 5  PISAAARIIGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERGLRNINLHNLLKFADGL 64

Query: 74 DTPLWKLL 81
               KL+
Sbjct: 65 GVNPAKLV 72


>gi|240139351|ref|YP_002963826.1| hypothetical protein MexAM1_META1p2796 [Methylobacterium
          extorquens AM1]
 gi|240009323|gb|ACS40549.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 87

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R I   N R +R    L+Q+ +    G  ++++  +E G   + I  +  +A  L  P+
Sbjct: 3  ARTIIGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPV 62

Query: 78 WKLL 81
            LL
Sbjct: 63 AHLL 66


>gi|240080756|ref|ZP_04725299.1| putative transcriptional regulator [Neisseria gonorrhoeae FA19]
          Length = 105

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77

Query: 79 KLLKP 83
          +LL P
Sbjct: 78 QLLPP 82


>gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa
          SC2]
 gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa
          SC2]
          Length = 179

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R  RK   L+ ++I  RTG +Q ++S++E  K++ +I  +  +A+ L+ PL  LL
Sbjct: 4  GCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFLL 62


>gi|296125780|ref|YP_003633032.1| XRE family transcriptional regulator [Brachyspira murdochii DSM
          12563]
 gi|296017596|gb|ADG70833.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM
          12563]
          Length = 139

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 4  RKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +  D+ +    I  E +I     N R IRK    T  EI   +G +  ++  +E GK  I
Sbjct: 19 KTEDDKNNERPIEDEELISSVGKNIRAIRKSQMKTISEIAEVSGISSKYLQSVEVGKRNI 78

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +I N+  +A TL+ P+  L 
Sbjct: 79 SITNLNKIAKTLNVPIAVLF 98


>gi|144897919|emb|CAM74783.1| Helix-turn-helix motif [Magnetospirillum gryphiswaldense MSR-1]
          Length = 85

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F    R IR E  +TQ+E+ ++ G +  ++S++E G+S  ++  +  LA  L   + 
Sbjct: 4  RQKFGLLLRKIRIEKAMTQEELAHQAGMSVPYLSDIERGRSAPSLVVLADLATALGITMA 63

Query: 79 KLLK 82
           + +
Sbjct: 64 DMFR 67


>gi|300704586|ref|YP_003746189.1| transcriptional regulator protein [Ralstonia solanacearum
          CFBP2957]
 gi|299072250|emb|CBJ43582.1| putative transcription regulator protein [Ralstonia solanacearum
          CFBP2957]
          Length = 113

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R    P     I           +  R  A  +Q+ +       +++IS +E G +  +
Sbjct: 8  KRPDPSPSRPAPISVA---LGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPS 64

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          ++ +  + H L   L +L  P
Sbjct: 65 VETLANICHCLGVTLSELFAP 85


>gi|316985058|gb|EFV64011.1| helix-turn-helix family protein [Neisseria meningitidis H44/76]
          Length = 106

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLLP 83


>gi|300702647|ref|YP_003744247.1| transcriptional regulator protein [Ralstonia solanacearum
          CFBP2957]
 gi|299070308|emb|CBJ41600.1| putative transcription regulator protein [Ralstonia solanacearum
          CFBP2957]
          Length = 113

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R          IL          +  R  A  +Q+ +       +++IS +E G +  +
Sbjct: 8  KRPDPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 64

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          I+ +  L + L+  L +L  P
Sbjct: 65 IETLANLCYALNVTLAELFGP 85


>gi|225076577|ref|ZP_03719776.1| hypothetical protein NEIFLAOT_01625 [Neisseria flavescens
          NRL30031/H210]
 gi|319639292|ref|ZP_07994043.1| transcriptional regulator [Neisseria mucosa C102]
 gi|224952077|gb|EEG33286.1| hypothetical protein NEIFLAOT_01625 [Neisseria flavescens
          NRL30031/H210]
 gi|317399476|gb|EFV80146.1| transcriptional regulator [Neisseria mucosa C102]
          Length = 98

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P L D     R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  
Sbjct: 9  PSLPDP-QDLRAVIAYNMRLYRVNHGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEK 67

Query: 69 LAHTLDTPLWKLLKP 83
          +A  L    +KLL P
Sbjct: 68 IASALKIAPYKLLLP 82


>gi|325136301|gb|EGC58909.1| DNA-binding protein [Neisseria meningitidis M0579]
 gi|325202093|gb|ADY97547.1| DNA-binding protein [Neisseria meningitidis M01-240149]
          Length = 106

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 19 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78

Query: 79 KLLKP 83
          +LL P
Sbjct: 79 QLLLP 83


>gi|325564096|gb|ADZ31417.1| C.SfoIP [Serratia fonticola]
          Length = 77

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F     ++R E KL+Q+++  R    ++++S +E G+  +++ N+  LA  L+     
Sbjct: 8  KAFGKKMYSLRIELKLSQEQVAERAQLDRTYVSSVERGQRNVSLLNICKLAAALEVTPES 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|325200161|gb|ADY95616.1| DNA-binding protein [Neisseria meningitidis H44/76]
          Length = 105

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77

Query: 79 KLLKP 83
          +LL P
Sbjct: 78 QLLLP 82


>gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 179

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R  RK   L+ ++I  RTG +Q ++S++E  K++ +I  +  +A+ L  PL  LL
Sbjct: 4  GCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFLL 62


>gi|91790905|ref|YP_551856.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91700785|gb|ABE46958.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 78

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E+ ++Q     R GF Q+++S LE G++   ++ + ++A   +  +++  
Sbjct: 9  VGMTVRKLRVESGMSQVVFGERCGFYQTYLSRLERGQANPTLNALEVIAGAFNLSIFEFF 68

Query: 82 K 82
          +
Sbjct: 69 E 69


>gi|325206015|gb|ADZ01468.1| DNA-binding protein [Neisseria meningitidis M04-240196]
 gi|325208153|gb|ADZ03605.1| DNA-binding protein [Neisseria meningitidis NZ-05/33]
          Length = 105

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 77

Query: 79 KLLKP 83
          +LL P
Sbjct: 78 QLLLP 82


>gi|325479315|gb|EGC82411.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 177

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RKE   TQK++  + G + ++IS++E G S  + +N+  +A  L   + +L
Sbjct: 1  MLNENIKRLRKEKGFTQKDLAVKVGVSITFISQIENGISKPSDENLKKIADVLGVTVNEL 60


>gi|299530876|ref|ZP_07044290.1| hypothetical protein CTS44_08827 [Comamonas testosteroni S44]
 gi|298721097|gb|EFI62040.1| hypothetical protein CTS44_08827 [Comamonas testosteroni S44]
          Length = 126

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%)

Query: 10  HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
                 +  + +   N   +R+E +L+Q+E+ +R G  ++ I  +E  K  + ++ +  L
Sbjct: 51  QKKKTAVSAKELLAKNVLRLREERELSQEELCHRAGVHRAIIGHIERQKRNVTLETLEAL 110

Query: 70  AHTLDTPLWKLLK 82
           A  LD  + +L  
Sbjct: 111 AVGLDVGISELFT 123


>gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758]
 gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758]
 gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 129

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RK+  L+ +E+      +  +IS +E  K   +++++I +++ L+  + +L
Sbjct: 7  LIGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDEL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|94313037|ref|YP_586246.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93356889|gb|ABF10977.1| transcriptional regulator, Xre/Cro/CI family [Cupriavidus
          metallidurans CH34]
          Length = 212

 Score = 63.1 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M ++++ EP  ++  + ER         +RK   LT +E+  R    +S++S+LE G S+
Sbjct: 15 MSKKQKVEPVAAEPSIAER------LAELRKLNGLTLEELAQRASLTKSYLSKLERGLSS 68

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
            I  ++ LA  L   + +L+ 
Sbjct: 69 PTIGTVLKLADALGVTVDQLIT 90


>gi|326315473|ref|YP_004233145.1| helix-turn-helix domain-containing protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323372309|gb|ADX44578.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 189

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R EA L+Q  +    G ++  IS LE G + I++ ++  LA  L      L+
Sbjct: 18 VSENLRRLRAEAGLSQLALAEAAGLSRRMISSLEAGDTNISLASLDRLAAALGVGFVALV 77


>gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          casseliflavus EC30]
 gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          casseliflavus EC10]
 gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          casseliflavus EC30]
 gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          casseliflavus EC10]
          Length = 180

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R +  LTQ+E+  RT   + +IS+LE   S+ +++    +   L     +  +
Sbjct: 4  GEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 63


>gi|75675038|ref|YP_317459.1| XRE family transcriptional regulator [Nitrobacter winogradskyi
          Nb-255]
 gi|74419908|gb|ABA04107.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi
          Nb-255]
          Length = 71

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 35/65 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R + KLTQ+E+  R+G +  ++  +E G  + ++  +  +A  LD    
Sbjct: 4  KEVMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSVLGKVAVALDVDPC 63

Query: 79 KLLKP 83
           L++P
Sbjct: 64 DLIRP 68


>gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
          Length = 94

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+ +LL
Sbjct: 8  FGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|291521949|emb|CBK80242.1| Helix-turn-helix [Coprococcus catus GD/7]
          Length = 80

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           L   I R +     N +  RK ++++Q+ + +  G  +++IS+LE  K    +  M++L
Sbjct: 7  ELEGEIERMKQRLSYNIKRYRKLSRVSQQALADMCGLHRTYISDLENAKCNPTLSVMMVL 66

Query: 70 AHTLDTPLWKLLK 82
          A  L+  L  LLK
Sbjct: 67 ADCLNVQLEDLLK 79


>gi|240136847|ref|YP_002961314.1| Transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
 gi|240006811|gb|ACS38037.1| Transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
          Length = 97

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R +R    L+Q+ +    G A  ++S +E G     +D +  LA  L   + 
Sbjct: 4  RGRLAWNLRLLRGARGLSQETLAVDAGVAAPYLSGIERGVRNPTVDVLDRLAGALGVEID 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 ALLR 67


>gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris
          StLB046]
          Length = 180

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  + +R +  LTQ+E+  RT  ++ +IS+LE   ++ +I+ +  L   L      
Sbjct: 1  MQIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFNLLEVLGCTPRD 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis
          LMG 20546]
 gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis
          LMG 20546]
          Length = 185

 Score = 62.7 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N   +RK+  L+Q+E+  R G   S IS +E GK + ++ ++  + +     L +   
Sbjct: 7  GKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFFT 66


>gi|242278893|ref|YP_002991022.1| XRE family transcriptional regulator [Desulfovibrio salexigens
          DSM 2638]
 gi|242121787|gb|ACS79483.1| transcriptional regulator, XRE family [Desulfovibrio salexigens
          DSM 2638]
          Length = 107

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  N  R+IRK+  LTQ ++ N +     +ISE+E G S + +D +  +A+ L  P+  
Sbjct: 6  KLVGNKIRSIRKKRGLTQAQLGNESDLNDKYISEIERGSSKLTVDALNKIANGLKVPVKD 65

Query: 80 LL 81
          +L
Sbjct: 66 IL 67


>gi|253574698|ref|ZP_04852038.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845744|gb|EES73752.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 129

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N R  RK   LTQ+++   T    S+I  LE G+  + ++ +  +A  L   ++ 
Sbjct: 25 KQVGKNVRYYRKLKGLTQEQLAESTETYGSYIGRLERGEQNVQLETLHKIADALQISVYA 84

Query: 80 LLK 82
          L +
Sbjct: 85 LFR 87


>gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus
          pseudintermedius ED99]
          Length = 179

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R+   LTQ+E+  RT  ++ +IS++E+ K++ N++  + +   L T      
Sbjct: 4  GQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRDFF 62


>gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 112

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R    LTQ+++   TG   S+I ++E G+ + +++ +I ++ +LDT +  +
Sbjct: 12 LLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLIDISKSLDTSISYI 71

Query: 81 L 81
          L
Sbjct: 72 L 72


>gi|78186565|ref|YP_374608.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78166467|gb|ABB23565.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 105

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R +A  +++++   +G + ++I  +E G   I I N   LA  L T + KLL
Sbjct: 13 LGRNIRAARVKAGYSREKLSELSGLSTNYIGIIERGMKNITIINCQRLACALSTSIDKLL 72

Query: 82 K 82
          +
Sbjct: 73 E 73


>gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 179

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T L  
Sbjct: 1  MQIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLTSPSISTLVDILQCLGTSLKD 60

Query: 80 LLK 82
            +
Sbjct: 61 FFQ 63


>gi|296446597|ref|ZP_06888539.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gi|296255951|gb|EFH03036.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 118

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R  R+  +L+Q+E+ +R    +++IS +E    +  +D +  LA  L  P  
Sbjct: 4  RETLARNLRKYRRAQRLSQEELGHRAELDRTYISSIERCVYSATVDVVGRLADALGIPAL 63

Query: 79 KLLKP 83
          +LL+P
Sbjct: 64 ELLRP 68


>gi|240140512|ref|YP_002964992.1| hypothetical protein MexAM1_META1p4053 [Methylobacterium
          extorquens AM1]
 gi|240010489|gb|ACS41715.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 87

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           + I   N R +R    L+Q+ +    G  ++++  +E G   + I  +  +A  L  P+
Sbjct: 3  AQTIIGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPV 62

Query: 78 WKLL 81
            LL
Sbjct: 63 AHLL 66


>gi|169825863|ref|YP_001696021.1| MerR family transcriptional regulator [Lysinibacillus sphaericus
          C3-41]
 gi|168990351|gb|ACA37891.1| transcriptional regulator, MerR family [Lysinibacillus sphaericus
          C3-41]
          Length = 132

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +     R IR    L+Q+E+  RTG   F++  +S +E G+S I +  +  L   LD P
Sbjct: 9  KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETLMKALDIP 68

Query: 77 LWKLL 81
            +L 
Sbjct: 69 PEELF 73


>gi|211907951|gb|ACJ12471.1| DNA binding regulatory protein [Rhodococcus sp. T104]
          Length = 197

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R  R+E  L+  E+  R+G ++  +S++E G     ++ + +L   LD P  +
Sbjct: 10 QLVARNVRRYRQERGLSLAELARRSGLSKQTLSKVEQGVGNPTVETLALLGAALDMPARR 69

Query: 80 LLK 82
          LL 
Sbjct: 70 LLT 72


>gi|167571316|ref|ZP_02364190.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis C6786]
          Length = 100

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 40/73 (54%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +     R     N R+ R++  L+Q+++ +  G  ++++S++E     I++DN+  LA
Sbjct: 4  SPNTAAAVRARLAANLRDQRQQRGLSQEKLADEAGLHRTYVSQVERTIVNISLDNLTKLA 63

Query: 71 HTLDTPLWKLLKP 83
            L+T +  LLKP
Sbjct: 64 DALETDVHLLLKP 76


>gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC
          BAA-613]
          Length = 184

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +RKE KLT K+I   TG +  +IS+LE G    ++ ++  ++  L    + L
Sbjct: 1  MVGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVEPSLSSLRKVSEFLGVSPYLL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
 gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01]
 gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B]
          Length = 185

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N   +RK+  L+Q+E+  R G   S IS +E GK + ++ ++  + +     L +   
Sbjct: 7  GKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFFT 66


>gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144]
 gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis
          FRI909]
          Length = 179

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + L   L T      K
Sbjct: 4  GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63


>gi|126649566|ref|ZP_01721807.1| Transcriptional regulator, MerR family protein [Bacillus sp.
          B14905]
 gi|126593891|gb|EAZ87814.1| Transcriptional regulator, MerR family protein [Bacillus sp.
          B14905]
          Length = 129

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +     R IR    L+Q+E+  RTG   F++  +S +E G+S I +  + IL   LD P
Sbjct: 6  KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLEILMKALDIP 65

Query: 77 LWKLL 81
            +L 
Sbjct: 66 PEELF 70


>gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC
          12228]
 gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus
          epidermidis RP62A]
 gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus
          epidermidis M23864:W2(grey)]
 gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus
          epidermidis RP62A]
 gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus
          epidermidis M23864:W2(grey)]
 gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU144]
 gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU028]
 gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU045]
          Length = 179

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + L   L T      K
Sbjct: 4  GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63


>gi|294617990|ref|ZP_06697595.1| helix-turn-helix domain protein [Enterococcus faecium E1679]
 gi|291595799|gb|EFF27087.1| helix-turn-helix domain protein [Enterococcus faecium E1679]
          Length = 190

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  RK+ K+TQ ++  +   ++S+++++E  +   +I+ +  +A  LD  +  LL
Sbjct: 4  GRNIKIARKQKKMTQNDLAIKASISRSYLADVEGNRYNPSIETLDSIARALDVQIGTLL 62


>gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio
          parahaemolyticus RIMD 2210633]
 gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ3810]
 gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          K5030]
 gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AN-5034]
 gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          Peru-466]
 gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ4037]
 gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD
          2210633]
 gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ3810]
 gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          Peru-466]
 gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AN-5034]
 gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          AQ4037]
 gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus
          K5030]
 gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio
          parahaemolyticus 10329]
          Length = 185

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +RK+  L+Q+E+  R G   S IS +E GK + ++ ++  + +     L +  
Sbjct: 7  GKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFF 65


>gi|94309910|ref|YP_583120.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93353762|gb|ABF07851.1| conserved hypothetical protein with lambda repressor-like
          DNA-binding domains [Cupriavidus metallidurans CH34]
          Length = 131

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  +   +RK+   +Q+ +   +G A+S++S +E G   + + N+  LA TL      
Sbjct: 10 KLFGRHLTWLRKQRGWSQEALSLESGLARSYLSGIERGTRNVALYNICTLADTLGVAPSV 69

Query: 80 LL 81
          +L
Sbjct: 70 ML 71


>gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402]
 gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7]
 gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402]
 gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7]
          Length = 287

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N    +RKE  L+Q+ + N  G ++  +S+ E  +++ + DN+I+LA      L  LLK
Sbjct: 18 ANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSLDDLLK 77


>gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus ATCC 12755]
 gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus ATCC 12755]
          Length = 182

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R +  LTQ+E+  RT   + +IS+LE   S+ +++    +   L     +  +
Sbjct: 6  GEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 65


>gi|92118034|ref|YP_577763.1| XRE family transcriptional regulator [Nitrobacter hamburgensis
          X14]
 gi|91800928|gb|ABE63303.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis
          X14]
          Length = 86

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N +  RK   L+Q+ +       +++IS +E G    ++D ++ LA  L T   
Sbjct: 17 RRVLAQNVKAARKTLDLSQEALALEAEIDRTYISGVERGLRNPSLDLIVKLALNLKTTPA 76

Query: 79 KLLKP 83
           LL P
Sbjct: 77 ALLTP 81


>gi|153008007|ref|YP_001369222.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151559895|gb|ABS13393.1| putative transcriptional regulator, XRE family [Ochrobactrum
          anthropi ATCC 49188]
          Length = 87

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N + IR+E +L+Q+E+  R    +++IS LE GK    I  + +LA  L     
Sbjct: 17 RSVVGLNVQRIRRERRLSQEELSFRAAKTRAYISGLEAGKRNPTILTLAMLADALAVEPN 76

Query: 79 KLLK 82
           LL+
Sbjct: 77 DLLR 80


>gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758]
 gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758]
          Length = 179

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    LTQ+E+ +R+  ++ +IS+LE   ++ +I  ++ +   L T L +  
Sbjct: 4  GQKVRELRIAKNLTQEELADRSELSKGFISQLERDLTSPSIATLVDILQCLGTNLNEFF 62


>gi|207721971|ref|YP_002252409.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2]
 gi|207744683|ref|YP_002261075.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609]
 gi|206587144|emb|CAQ17728.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2]
 gi|206596090|emb|CAQ63017.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609]
          Length = 113

 Score = 62.7 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R          IL          +  R  A  +Q+ +       +++IS +E G +  +
Sbjct: 8  KRPDPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 64

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          ++ +  L + L+  L +L  P
Sbjct: 65 VETLANLCYALNVTLAELFGP 85


>gi|11138961|gb|AAG31560.1| SgraIC control protein [Streptomyces griseus]
          Length = 79

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R     +Q+ +  ++G  ++++S LE G+    +  +  LA  L+ PL +L++
Sbjct: 12 VRAVRLRRGWSQELLSEKSGLDRTYVSGLERGRRNPALLTLARLADALEVPLSELIR 68


>gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
 gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
          Length = 181

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+    G   S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
 gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
          Length = 181

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+    G   S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|221235725|ref|YP_002518162.1| Xre family transcriptional regulator [Caulobacter crescentus
          NA1000]
 gi|220964898|gb|ACL96254.1| transcriptional regulator, Xre family [Caulobacter crescentus
          NA1000]
          Length = 69

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+   L Q E+ +  G   +++S +ETGK  + +  +  LA  L  P   L
Sbjct: 6  VVGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLASALRVPETDL 65

Query: 81 L 81
          +
Sbjct: 66 V 66


>gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 129

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RK+  L+ +E+      +  +IS +E  K   +++++I +++ L+  + +L
Sbjct: 7  LIGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDEL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|330825626|ref|YP_004388929.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329310998|gb|AEB85413.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 87

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  + +    L D     R +     R  R E   +Q+ +       ++++S +E  +  
Sbjct: 1  MSAKPQAPTSLPDPNNL-RDVLAYWMRLKRVEKGWSQERLAMECELDRTYVSAVERSRWN 59

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          +++ N+   A  LD   W LL+P
Sbjct: 60 VSLSNIERFAQALDVEPWMLLRP 82


>gi|325130250|gb|EGC53019.1| PvuIIC [Neisseria meningitidis OX99.30304]
          Length = 98

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 11 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 70

Query: 79 KLLKP 83
          +LL P
Sbjct: 71 QLLLP 75


>gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum
          ATCC 824]
 gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018]
          Length = 179

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R E +LTQ+E+ NR   ++ +IS++E   ++ +I  +  +   L T L    K
Sbjct: 4  GEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPDFFK 63


>gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio
          nitroreducens DSM 19672]
 gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio
          nitroreducens DSM 19672]
          Length = 178

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 38/61 (62%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    R+IRK   +T +++  +TGF +S+IS++E GK++ +I ++  + + +   + +L 
Sbjct: 3  YGEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISELF 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|209694526|ref|YP_002262454.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238]
 gi|208008477|emb|CAQ78645.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238]
          Length = 70

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R IRK   ++Q ++       +S++  +E G+  I ++ +  LA  L+  + +LL
Sbjct: 8  FGKKLREIRKVKGVSQDKLALIADIDRSYVGRIERGEVNITLEKVYKLADALECDVTELL 67


>gi|159026724|emb|CAO89038.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 75

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             L  +  F    R  R+E  L+Q+ +  +    +++IS ++ GK  ++++N+  LA  
Sbjct: 4  KESLDIKHRFGKAIRRRRRELDLSQEILAEKAELHRTYISSIQLGKCNVSLENIEKLAKA 63

Query: 73 LDTPLWKLL 81
          LD  +  L 
Sbjct: 64 LDISIADLF 72


>gi|302385593|ref|YP_003821415.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302196221|gb|ADL03792.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 68

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    ++Q++        +++ + +E+GK  I+I N+  +A+ L   L +L 
Sbjct: 6  FGQRIKILRNGLGISQEKFALSIDMDRTYYASVESGKRNISIKNIEKIANGLGITLEELF 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|169627870|ref|YP_001701519.1| putative transcriptional regulator [Mycobacterium abscessus ATCC
          19977]
 gi|169239837|emb|CAM60865.1| Hypothetical transcriptional regulator [Mycobacterium abscessus]
          Length = 185

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R EA L+  E+  R+G  +  ISELE G+ T  +D +  L   L  PL
Sbjct: 11 VGARLRRLRTEAGLSLAELATRSGVGKGSISELENGRRTARLDTLFALTKALGAPL 66


>gi|325564166|gb|ADZ31423.1| C.PsuNIP [Pseudomonas stutzeri]
          Length = 78

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+  +L+Q+E+ +R G  +++IS +E G    ++  M  +A  L + L  L 
Sbjct: 7  FGQAVRRHRELLRLSQEELADRAGIDRTYISGVERGVRNPSLLVMQRIATALGSDLDVLF 66


>gi|251800040|ref|YP_003014771.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547666|gb|ACT04685.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 182

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IRK   +T  +I   TG +Q ++S++ET K++ +I  +  +A+ L  PL  LL
Sbjct: 4  GSAIRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAYLL 62


>gi|152982646|ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille]
 gi|151282723|gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 109

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+    +Q+ +  +    +S++ E+E GK+  ++  +  LA  L   +  LL
Sbjct: 32 VRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTIPSLITLDKLASALGLKVSDLL 87


>gi|160916243|ref|ZP_02078450.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991]
 gi|158431967|gb|EDP10256.1| hypothetical protein EUBDOL_02270 [Eubacterium dolichum DSM 3991]
          Length = 94

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  RK+   TQ ++    G  Q++ISE+E GK  + +  +  LA  L   + +L+
Sbjct: 34 FGRNVQMYRKQRHYTQFQLAELCGLNQNYISEIENGKRNVTLRVLNDLAEALGVEVKELV 93


>gi|153004310|ref|YP_001378635.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp.
          Fw109-5]
 gi|152027883|gb|ABS25651.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 68

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N ++ R   KL+Q+ +  + G + S+IS LE G+ T  +D +  LA  L      LL
Sbjct: 8  FAVNLKSERLRRKLSQEALAAKAGLSVSYISMLERGQRTPPLDTLESLAKALAVSPTSLL 67


>gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 256

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+E  ++  ++  +   + S++SE+E G    ++  +  LA  L+    +L++
Sbjct: 5  GERIRALREEKGMSLHDLARKAQISLSYLSEIERGTKRPSLRTIEKLAQALNVSKARLVE 64

Query: 83 P 83
          P
Sbjct: 65 P 65



 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           + R   +        L ++       R +R+E  LTQ ++    G     I ++E GK  
Sbjct: 118 LKRLAEELGVAPVTFLGQQGTLGARLRALREEYGLTQAQLAAMAGVTAGLIGQIEQGKVQ 177

Query: 61  INIDNMIILAHTLDT-PLWKLLKP 83
            ++  +  +A  +   P + L++P
Sbjct: 178 PSLKTLEKIAQAMGVSPCYFLIEP 201



 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R E   + +E+  R G + S++SE+E G    ++  +  LA  L       L
Sbjct: 74  VGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVYPSLSTLKRLAEELGVAPVTFL 133


>gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 189

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +RK A L+Q  +   +G ++  I+ LE G S I++ ++  LA  L+     L+
Sbjct: 18 VGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEVGFVDLV 77


>gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum
          DSM 5476]
 gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum
          DSM 5476]
          Length = 119

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R +R++  ++Q+E+  +   + + + ++E       +D +  +A  L   + +L
Sbjct: 13 VLGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERALKNPTVDTVSHIADALGITVDQL 72

Query: 81 LK 82
           +
Sbjct: 73 FQ 74


>gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 178

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 40/63 (63%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M +    R IRK+  +T ++I  +TGF +S+IS++E GK++ +I ++  + + L T + +
Sbjct: 1  MSYGIKLREIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISE 60

Query: 80 LLK 82
          L +
Sbjct: 61 LFE 63


>gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 186

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R    L+  E+  R    ++ +SE+E+G+   NI+ +  L   LD PL  +L
Sbjct: 7  GDRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPLTGML 65


>gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine
          transporter [Staphylococcus pseudintermedius HKU10-03]
 gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine
          transporter [Staphylococcus pseudintermedius HKU10-03]
          Length = 179

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R+   LTQ+E+  RT  ++ +IS++E+ K++ N++  + +   L T      
Sbjct: 4  GQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRDFF 62


>gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. e14]
 gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. e14]
          Length = 181

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+  E+  R+G  +  +SELE+G     +D +  L   L+ PL  +L
Sbjct: 7  VGRRLRELRTARGLSLSELARRSGVGKGTLSELESGTRNPTLDTLYALTTALNRPLSAVL 66


>gi|225022262|ref|ZP_03711454.1| hypothetical protein CORMATOL_02297 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224944985|gb|EEG26194.1| hypothetical protein CORMATOL_02297 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 70

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R+ RKE  L+Q+   +  G  ++++  +E G+  + +  +  LA  +   + 
Sbjct: 7  QKVVGAYLRSYRKERGLSQERFADVLGVHRTYMGSVERGERNLTLQTVEHLAEQIGVEVR 66

Query: 79 KLL 81
          ++L
Sbjct: 67 EML 69


>gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 456

 Score = 62.3 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 2   PRRK--RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           P R+     P         R    +  R  R+   L+Q+E+  R G ++  I  +E G+ 
Sbjct: 33  PGRRDGEAGPEARGRARPGREGVASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRM 92

Query: 60  TINIDNMIILAHTLDTPLWKLLK 82
           T ++   + LA  L   +  L +
Sbjct: 93  TPSLAVAMRLARALGCRVEDLFR 115


>gi|223937259|ref|ZP_03629165.1| transcriptional regulator, XRE family [bacterium Ellin514]
 gi|223894044|gb|EEF60499.1| transcriptional regulator, XRE family [bacterium Ellin514]
          Length = 73

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A  + R +     R  RKEA  +Q+++  +   +  ++S +E GK +  +DN++ +A  L
Sbjct: 3  ANQKHRRLLGEAVRAKRKEAGFSQEKLAEKADLSAVFVSRIERGKESPTLDNLVKIAKAL 62

Query: 74 DTPLWKLL 81
           T +  L+
Sbjct: 63 GTHVRDLV 70


>gi|241518608|ref|YP_002979236.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863021|gb|ACS60685.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 72

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N R +R+  KL+Q+E+ +R    +++IS LE    + +I+ +  LA  L     
Sbjct: 4  RETFARNLRTLRQARKLSQEELAHRASVDRTYISSLERCVYSPSIEVLDRLAAVLGVEPA 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 106

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     + +RK  K+TQ+++  + G    ++S +E G+S+ +++ M  +A  LD  + 
Sbjct: 5  KELLGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALDVEMK 64

Query: 79 KLL 81
           + 
Sbjct: 65 DMF 67


>gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909]
 gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1]
 gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909]
 gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1]
          Length = 180

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     R +R E +LTQ+E+ +RT   + +IS++E   ++ +I  ++ +   L T L +
Sbjct: 1  MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|148554493|ref|YP_001262075.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499683|gb|ABQ67937.1| transcriptional regulator, XRE family [Sphingomonas wittichii
          RW1]
          Length = 57

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+E   +Q+   +  G  +++IS++E G     +  +  LA     P  +L+
Sbjct: 1  MRRLREEKGWSQEAYADEAGIHRTYISDIERGARNPTVKVVEKLAAPFGVPAGQLI 56


>gi|86158858|ref|YP_465643.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|197121836|ref|YP_002133787.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220916628|ref|YP_002491932.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|85775369|gb|ABC82206.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|196171685|gb|ACG72658.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
 gi|219954482|gb|ACL64866.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 68

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N ++ R   KL+Q+ +  + G + S+IS LE G+ T  +D +  LA  L      LL
Sbjct: 8  FAVNLKSERLRRKLSQEALAAKAGLSVSYISMLERGQRTPPLDTLESLAKALSVSPTSLL 67


>gi|328882934|emb|CCA56173.1| hypothetical protein SVEN_2887 [Streptomyces venezuelae ATCC
          10712]
          Length = 62

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R+ R  A LTQ+ +   +G A++ I E+E+G++   +D +++LA  +  P   L
Sbjct: 1  MFGARVRDARMYANLTQQRVGELSGLARATIQEIESGRAAPTVDTVLLLADAIGVPPGVL 60

Query: 81 LK 82
           +
Sbjct: 61 FE 62


>gi|294790649|ref|ZP_06755807.1| BamHI control element [Scardovia inopinata F0304]
 gi|294458546|gb|EFG26899.1| BamHI control element [Scardovia inopinata F0304]
          Length = 83

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 36/72 (50%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +++ I  +R+      R  R+E KL+Q+++       +S++  +E G+ ++++D +  L 
Sbjct: 1  MTNDIRSKRLALGQAIRYYREEKKLSQEDLALAADMDRSYVGRVERGEKSVSLDKIWQLC 60

Query: 71 HTLDTPLWKLLK 82
            L     +L  
Sbjct: 61 IALGITPVELFT 72


>gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139]
 gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139]
          Length = 179

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  K
Sbjct: 4  GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63


>gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42]
          Length = 122

 Score = 61.9 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R    LTQ+ + ++ G     +S +ETG S++++  ++ +A+ L+  + +
Sbjct: 6  KAIGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLNVSVDE 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|78063471|ref|YP_373379.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77971356|gb|ABB12735.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 73

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R+    +Q+++    G  +S++ E+E G++  +I     +A   D  +  LL
Sbjct: 8  FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67


>gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC
          334]
 gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str.
          Zhang]
 gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
          334]
 gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str.
          Zhang]
          Length = 185

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+  L+Q ++    G ++  IS+ E G +  ++D +  L   L      L
Sbjct: 1  MFGERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAEPDLDKIAKLRDILGVSYADL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM
          15053]
 gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM
          15053]
          Length = 134

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P +  AI+ E++ F    +  R  A LTQ+E+  +   + S+IS LE GK   +I  +++
Sbjct: 17 PKVKGAIMEEKIGF--RVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLM 74

Query: 69 LAHTLDTPLWKLLK 82
          LA  ++  L  LL+
Sbjct: 75 LADIMNVGLEDLLR 88


>gi|168204997|ref|ZP_02631002.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170663385|gb|EDT16068.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
          Length = 180

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M      + +RK+ KLTQK +   TG ++S++S++E  +   + D +  LA  L   L
Sbjct: 1  MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDL 58


>gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
          Length = 179

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T      K
Sbjct: 4  GSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLSILEVLGTSASDFFK 63


>gi|147677133|ref|YP_001211348.1| hypothetical protein PTH_0798 [Pelotomaculum thermopropionicum
          SI]
 gi|146273230|dbj|BAF58979.1| Uncharacterized protein conserved in bacteria [Pelotomaculum
          thermopropionicum SI]
          Length = 114

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N R  RK   LT K++        +++  LE G+   ++  +  +A TL+   + 
Sbjct: 9  KVFGKNVRQYRKMKGLTLKQMSRGLNITGAYLGYLERGQRNPSLLALAEIAKTLEVQPYL 68

Query: 80 LLKP 83
          LL P
Sbjct: 69 LLIP 72


>gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          gallinarum EG2]
 gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus
          gallinarum EG2]
          Length = 180

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  +
Sbjct: 4  GEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFTILEVLGVTPEEFFR 63


>gi|241554336|ref|YP_002979549.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863642|gb|ACS61304.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 72

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N R +R+  K++Q+E+ +R+   +++IS LE    + +I+ +  LA  L     
Sbjct: 4  RETFARNLRTLRQARKMSQEELAHRSSVDRTYISSLERCVYSPSIEVLDRLAAVLGVEPA 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 DLLR 67


>gi|299133247|ref|ZP_07026442.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593384|gb|EFI53584.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 76

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N   +R E  ++Q+E+ +     +S++S+LETGK+ + ++ M  +A  L     
Sbjct: 4  RRTFAANVVKLRAERGISQEELAHLAEINRSYLSDLETGKTYVGLEIMGKIADVLGVEGA 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|251779168|ref|ZP_04822088.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083483|gb|EES49373.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 80

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +NIR+   ++Q+++  +   +Q +IS +E GK +  I  +  +A+ L+     LL
Sbjct: 8  LKNIRENKGISQRQLAKKLNISQGYISSIENGKKSPTIRMLYRIANALEICPHYLL 63


>gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora
          erythraea NRRL 2338]
 gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea]
 gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain
          [Saccharopolyspora erythraea NRRL 2338]
          Length = 196

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +R    L+  E+  R    +  +SELE G+    ++ +  LA  L+ PL +
Sbjct: 5  KVVGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGE 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|17545816|ref|NP_519218.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428110|emb|CAD14799.1| probable transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 113

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R  A  +Q+ +       +++IS +E G +  +++ +  + H L   L +L 
Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83

Query: 82 KP 83
           P
Sbjct: 84 AP 85


>gi|323526312|ref|YP_004228465.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323383314|gb|ADX55405.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001]
          Length = 74

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK    +Q+ +   +G A+S+I  +E G+  I + N+ +LA TL      +
Sbjct: 8  LFGKRLIALRKARGWSQERLALESGLARSYIGGIERGQRNIALYNICVLAATLGISPASM 67

Query: 81 LK 82
          L+
Sbjct: 68 LE 69


>gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1]
 gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1]
          Length = 185

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +      N   +RKE  L+Q+E+  + G   S IS +E  K + ++ ++  + +     L
Sbjct: 2  DNHQIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKVSPSVSSLQKIVNVFSLSL 61

Query: 78 WKLLK 82
           +   
Sbjct: 62 SEFFT 66


>gi|186475021|ref|YP_001856491.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184191480|gb|ACC69445.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 90

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R    ++ R +R E   +Q+E+  R    +S+++ +E G   I++DN+  LA+   
Sbjct: 10 STPARQQLADSLRRLRAERNWSQEELAARCELDRSFVAHVERGARNISLDNVEKLANAFG 69

Query: 75 TPLWKLL 81
            +  L 
Sbjct: 70 VGIADLF 76


>gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787]
 gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787]
          Length = 179

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + +R E  LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L +  
Sbjct: 4  GNKIKELRIEKNLTQEELANRAELSKGFISQLERNLTSPSIATLIDILQCLGTNLTEFF 62


>gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15]
 gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15]
          Length = 142

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N +  RKE K+TQK +  +   ++S++ +LE+G+   ++D +  +A  LD  +  LL 
Sbjct: 6  NIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINLLLT 63


>gi|169346977|ref|ZP_02865925.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169297036|gb|EDS79160.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 180

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M      + +RK+ KLTQK +   TG ++S++S++E  +   + D +  LA  L   L
Sbjct: 1  MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDL 58


>gi|114800368|ref|YP_759512.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114740542|gb|ABI78667.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 72

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  N R +R++  ++Q+E+ +     ++++S LE    + ++D +  +A  LD    
Sbjct: 4  RDIFAQNIRRVRRQRGVSQEELASLANIDRTYVSALERSVYSASLDVVASIAKALDVEPH 63

Query: 79 KLL 81
          +LL
Sbjct: 64 ELL 66


>gi|45368590|ref|NP_990918.1| hypothetical protein pEST4011_44 [Achromobacter denitrificans]
 gi|44937759|gb|AAS49459.1| TrbA [Achromobacter denitrificans]
          Length = 125

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF  N   + +E  +T+ ++  + G + S++S+L  GK+  ++  M  +A  L  PL  
Sbjct: 4  QIFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPT 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLE 66


>gi|297660613|ref|YP_003710324.1| putative transcriptional regulator [Waddlia chondrophila WSU
          86-1044]
 gi|297377489|gb|ADI39318.1| putative transcriptional regulator [Waddlia chondrophila WSU
          86-1044]
          Length = 78

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R  F    R  R E  +TQ+E+  +     +++  +E G+  I ++N++ +A  L   
Sbjct: 12 PIRKAFGLKVRMRRFEIGITQEELAEKADLHPTYVGSVERGERNIALENIVAIAKGLGCS 71

Query: 77 LWKLL 81
             L+
Sbjct: 72 PKDLM 76


>gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum
          DSM 5476]
 gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum
          DSM 5476]
          Length = 261

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +RKEA L+Q+ +  + G ++  +S+ E+G+ST +I+N+  L+      L +L+K
Sbjct: 5  EKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDELIK 63


>gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium
          efficiens YS-314]
 gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium
          efficiens YS-314]
 gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 81

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 17 RERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           ++ I     +  R  RK+AKL+Q+E+ + +G  +++IS +E G   I++ N++ +   L
Sbjct: 3  PDKKILIQLGDRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLLSITGVL 62

Query: 74 DTPLWKLL 81
             +  ++
Sbjct: 63 GVDVGDIV 70


>gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
          YUAN-3]
 gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense
          YUAN-3]
          Length = 262

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+A L+Q+++    G ++  +S+ E G+S  ++D +++L+      L +L+
Sbjct: 3  FSERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDELV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|317508465|ref|ZP_07966134.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316253243|gb|EFV12644.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 177

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R + ++T +E+  RTG  +S++S++E G ST +I   + +A  L   + +L  P
Sbjct: 5  LRAARHQQRMTLEELAERTGLTKSYLSKVERGLSTPSIAVALKIAGALGVDVARLFDP 62


>gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083]
 gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 219

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 9  PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          PH++ A  RE+++        R+ RK+ ++T  E+ + TG +   +S++E G ++ ++  
Sbjct: 18 PHVTSAGEREKVLEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIENGNTSPSLST 77

Query: 66 MIILAHTLDTPLWKLLK 82
          +  LA+ L  PL    +
Sbjct: 78 LQTLANALSVPLTSFFR 94


>gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 180

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M      + +RK+ KLTQK +   TG ++S++S++E  +   + D +  LA++L   L
Sbjct: 1  MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALANSLKLDL 58


>gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC
          29799]
 gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC
          29799]
          Length = 259

 Score = 61.9 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +R+E  ++Q+E+ N  G ++  + + E+G S  NIDN++ ++      L  L
Sbjct: 1  MFEERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYL 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305]
 gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces
          brasiliensis DSM 5305]
          Length = 189

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+E  LT +E+ +++G  +SW+S++E  + T ++  +  +A  L  P+ +L+
Sbjct: 6  LAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVAELV 65

Query: 82 K 82
          +
Sbjct: 66 R 66


>gi|300691939|ref|YP_003752934.1| transcription regulator protein [Ralstonia solanacearum PSI07]
 gi|299078999|emb|CBJ51660.1| putative transcription regulator protein [Ralstonia solanacearum
          PSI07]
          Length = 113

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R  A  +Q+ +       +++IS +E G +  +++ +  + H L   L +L 
Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83

Query: 82 KP 83
           P
Sbjct: 84 AP 85


>gi|294013139|ref|YP_003546599.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292676469|dbj|BAI97987.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 80

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  + +   +  R +RK   LTQ+++   T   ++ I  +E G+  I I  M+ LA  LD
Sbjct: 3  VDPDLVPLGDAVRQLRKVRGLTQEDLSGLTELHRNHIGGIERGERNITIKTMLALARALD 62

Query: 75 TPLWKLL 81
              +L 
Sbjct: 63 VQPAELF 69


>gi|291286694|ref|YP_003503510.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290883854|gb|ADD67554.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 105

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+    +Q+ +  +   +  ++ E+E G+S ++   +  +A  L+ P+ +L+
Sbjct: 8  LGRRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALNIPIAELM 67


>gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319]
 gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319]
          Length = 180

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  +
Sbjct: 4  GKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKEFFE 63


>gi|290791048|gb|ADD63273.1| TrbA mating pair formation protein, transcription regulator
          [uncultured bacterium pAKD4]
          Length = 125

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF  N   + +E  +T+ ++  + G + S++S+L  GK+  ++  M  +A  L  PL  
Sbjct: 4  QIFFTNVLRLLEEQGMTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPT 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLE 66


>gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 259

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +N   IRKE  ++Q+E+      ++  IS+ E G +  +++N+  L+ +L   + +LL
Sbjct: 3  FKDNLYRIRKEKGMSQEELAALCDVSRQAISKWENGTANPDMENLKTLSRSLRVSIDELL 62


>gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC
          10379]
 gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC
          10379]
          Length = 181

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +  LTQ+E+  RT  ++ +IS++E   ++ +++    +   L        
Sbjct: 5  GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63


>gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612]
 gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612]
          Length = 268

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F      +RK+   +Q+ +  R G ++  +S+ E+G S  +I+N++ L+   +  L +
Sbjct: 1  MTFQERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1]
          Length = 180

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R + +LTQ+E+  RT  ++ +IS+LE  +S+ +++    +   L        
Sbjct: 4  GQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADFF 62


>gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
 gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
          Length = 180

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R + +LTQ+E+  RT  ++ +IS+LE  +S+ +++    +   L        
Sbjct: 4  GQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADFF 62


>gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1]
          Length = 180

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN+R + +LTQ+E+  RT  ++ +IS+LE  +S+ +++    +   L        
Sbjct: 4  GQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPADFF 62


>gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551]
 gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551]
          Length = 180

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+R +  LTQ+E+  RT  ++ +IS+LE   S+ +++    +   L     +  +
Sbjct: 4  GKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKEFFE 63


>gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          subsp. aureus 65-1322]
 gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M876]
 gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus C160]
 gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus M899]
 gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427]
 gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101]
 gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          H19]
 gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus M1015]
 gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 55/2053]
 gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          subsp. aureus 65-1322]
 gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          E1410]
 gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          M876]
 gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101]
 gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427]
 gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus M899]
 gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus C160]
 gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          H19]
 gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus ST398]
 gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus M1015]
 gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MN8]
 gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH60]
 gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          CGS00]
          Length = 179

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  K
Sbjct: 4  GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63


>gi|299067065|emb|CBJ38261.1| putative transcription regulator protein [Ralstonia solanacearum
          CMR15]
          Length = 113

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R  A  +Q+ +       +++IS +E G +  +++ +  + H L   L +L 
Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83

Query: 82 KP 83
           P
Sbjct: 84 AP 85


>gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp.
          aureus ED133]
          Length = 179

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  K
Sbjct: 4  GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63


>gi|254497228|ref|ZP_05110037.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353552|gb|EET12278.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 84

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R     +Q+EI + +G  ++++  +E G+  I+I N+I +A  L+  +  L+
Sbjct: 12 GEKIRTLRTSEGYSQEEIADASGMGRTYMGRVERGEQNISIQNLIQIAFALNVEVGVLV 70


>gi|170697248|ref|ZP_02888342.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170137868|gb|EDT06102.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 73

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R+    +Q+++    G  +S++ E+E G++  +I     +A   D  +  LL
Sbjct: 8  FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67


>gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 182

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R  A LT KE+  +TG + S+IS++E G S+  I ++  +A  L+ P+    
Sbjct: 6  LARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSFF 65

Query: 82 KP 83
           P
Sbjct: 66 TP 67


>gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 280

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N     RK+  L+Q+E+  + G ++  +S+ E  +++ + DN+I+LA      L +LLK
Sbjct: 6  ANRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSLDELLK 65


>gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 321

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           L E  IF    + +R+EA LTQ E+  + G  ++ +S  E G    +ID +  +A+  + 
Sbjct: 42  LIEENIFAMRLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIANYFNV 101

Query: 76  PLWKLL 81
               LL
Sbjct: 102 SSDYLL 107


>gi|163938818|ref|YP_001643702.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163861015|gb|ABY42074.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 112

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE  L+Q+ +   +G   + I  +E G+  + ++++  +   LD  L +L 
Sbjct: 7  LGERIRFLRKEKNLSQERLGELSGIHTNHIGAIERGEKNVTLESLAKVTKGLDITLEELF 66

Query: 82 K 82
          +
Sbjct: 67 R 67


>gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus
          aureus subsp. aureus Mu50]
 gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus
          N315]
 gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus COL]
 gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          str. JKD6009]
 gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp.
          aureus Mu50-omega]
 gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A9719]
 gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A5937]
 gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30]
 gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3]
 gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ED98]
 gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117]
 gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765]
 gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102]
 gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus 132]
 gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754]
 gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819]
 gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus MR1]
 gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796]
 gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus N315]
 gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family
          [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus COL]
 gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus USA300_FPR3757]
 gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus
          subsp. aureus JH9]
 gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus JH1]
 gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp.
          aureus USA300_TCH1516]
 gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH130]
 gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A9719]
 gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          A5937]
 gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3]
 gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30]
 gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ED98]
 gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          TW20]
 gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102]
 gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765]
 gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117]
 gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981]
 gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754]
 gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819]
 gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796]
 gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH70]
 gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus
          subsp. aureus JKD6159]
 gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus
          subsp. aureus str. JKD6008]
 gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus
          subsp. aureus ATCC BAA-39]
 gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp.
          aureus ECT-R 2]
 gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp.
          aureus CGS03]
 gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp.
          aureus CGS01]
 gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11]
 gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46]
 gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus
          subsp. aureus T0131]
 gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21189]
          Length = 179

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  K
Sbjct: 4  GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63


>gi|110834231|ref|YP_693090.1| transcriptional regulator [Alcanivorax borkumensis SK2]
 gi|110647342|emb|CAL16818.1| transcriptional regulator, putative [Alcanivorax borkumensis SK2]
          Length = 71

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    R +RK+  L+Q+E+ +  G  +S++  +E G+  I +  +  ++  L  P
Sbjct: 9  FGAKVRAMRKQKGLSQEELASLAGLDRSYMGHIERGEKNITLLKIYQISDALSLP 63


>gi|224826557|ref|ZP_03699658.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224601158|gb|EEG07340.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 81

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R     +Q+E+  R    ++++S +E G+S I +D++  LA  L+T   +LL
Sbjct: 7  FGRVVREARLAKGWSQEELAERASLHRNFVSLVERGQSKIALDSLFFLADALETTASELL 66

Query: 82 K 82
          +
Sbjct: 67 R 67


>gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 179

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N  R +R E  LTQ+E+ +R+   + +IS++E   ++ ++D+++ +   L T  
Sbjct: 4  GNKIREMRIEKGLTQEELADRSELTKGFISQIERDLTSPSVDSLLDILEALGTDP 58


>gi|126442387|ref|YP_001062902.1| XRE family transcriptional regulator [Burkholderia pseudomallei
          668]
 gi|126221878|gb|ABN85383.1| transcriptional regulator, XRE family [Burkholderia pseudomallei
          668]
          Length = 94

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+ +LL
Sbjct: 8  FGAAIRQLREARAWSQEQLAEHPGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|331085708|ref|ZP_08334791.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406631|gb|EGG86136.1| hypothetical protein HMPREF0987_01094 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 129

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R +  ++ +E+      +  +IS +E  K   +++++I + + L   L +L
Sbjct: 7  LIGIRIKETRNQQGISAEELAELANLSSVYISYIENAKRKPSLESLIKICNALGITLDEL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM
          5427]
 gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 176

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  NN +  RK+ KLTQKE+  + G A+  I + E G+   N++ +  LA TL    ++L
Sbjct: 1  MLGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891]
 gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891]
          Length = 185

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N   +RKE  L+Q+E+  R G   S IS +E GK + ++ ++  + +     L +   
Sbjct: 7  GKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLSEFFT 66


>gi|167645954|ref|YP_001683617.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167348384|gb|ABZ71119.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 69

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+   L Q E+ +  G   +++S +ETGK  +++  +  LA  L  P   L
Sbjct: 6  VVGANVRALREARGLPQDELAHLAGVHPTYLSGVETGKRNLSMKVLERLASALRVPETDL 65

Query: 81 L 81
          +
Sbjct: 66 V 66


>gi|293400397|ref|ZP_06644543.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306797|gb|EFE48040.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 66

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R++RK+  LTQ+E+       Q +IS++E G   +++  +  +A  L      LL
Sbjct: 7  FGRNVRSLRKQRHLTQEELAALCHVHQHYISDIERGVRNVSLRVVETIARALGVHEKDLL 66


>gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp.
          Re1]
          Length = 190

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R    N  R +R    LT KE+  +T  + S++S++E G S ++I  +  +AH L+T L
Sbjct: 5  KRKDIGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETEL 64


>gi|83746365|ref|ZP_00943417.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551]
 gi|83726906|gb|EAP74032.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551]
          Length = 119

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R          IL          +  R  A  +Q+ +       +++IS +E G +  +
Sbjct: 14 KRPDPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 70

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          ++ +  L + L+  L +L  P
Sbjct: 71 VETLANLCYALNVTLAELFGP 91


>gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107]
 gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107]
          Length = 201

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            L   M      + IR+   L+Q+E+  R G   S IS +E G+ + ++ ++  +    
Sbjct: 11 PSLDSHMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQVSPSVQSLERILTAF 70

Query: 74 DTPLWKLLKP 83
             L +   P
Sbjct: 71 PLSLAEFFSP 80


>gi|291520893|emb|CBK79186.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Coprococcus catus GD/7]
          Length = 87

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N R  R   KL Q+++  +T    ++I  +E G+   +++  I + + L   
Sbjct: 7  GKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVS 60


>gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor
          [Arthrobacter sp. FB24]
          Length = 199

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N  R +RK   +T   + + TG +Q+ +S++E G +  +   +  LAH LD P
Sbjct: 18 VGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFTTLAQLAHGLDVP 72


>gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
          DSM 5692]
 gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
          DSM 5692]
          Length = 76

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 36/59 (61%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               ++ RK+  L+Q+++ ++ GF +++IS +E GK   ++ N++ +A  L+  + +L
Sbjct: 8  LGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLEASVSEL 66


>gi|187921899|ref|YP_001893488.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
 gi|187720337|gb|ACD21559.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 79

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               F    R++R    ++Q  + N     +S+IS LE G  +  ++ M  LA  L+  
Sbjct: 4  PANYAFGKALRSLRARRGMSQYSLANEANLDRSYISLLERGHRSPTLETMCSLAQALNVS 63

Query: 77 LWKLL 81
          + +++
Sbjct: 64 IGEMI 68


>gi|218885897|ref|YP_002435218.1| XRE family transcriptional regulator [Desulfovibrio vulgaris str.
          'Miyazaki F']
 gi|218756851|gb|ACL07750.1| transcriptional regulator, XRE family [Desulfovibrio vulgaris
          str. 'Miyazaki F']
          Length = 101

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R+    +Q+++  R    +++I  +E G+  + + N++++A  +     +
Sbjct: 13 MALGTAIRQFREALGWSQEQLAERVELHRTYIGGVERGERNLCLLNILVIAKAMGMSPGR 72

Query: 80 LL 81
          L+
Sbjct: 73 LI 74


>gi|262371152|ref|ZP_06064473.1| RtrR protein [Acinetobacter johnsonii SH046]
 gi|262313882|gb|EEY94928.1| RtrR protein [Acinetobacter johnsonii SH046]
          Length = 70

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RKE K TQ+ +  + G  +S++  +E G+  I +  +  +AH L    + LL
Sbjct: 9  GQLIRKKRKEKKFTQEALALQCGIDRSYLGRIERGEVNITVLKLYEIAHILKVEPYHLL 67


>gi|264677637|ref|YP_003277543.1| XRE family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262208149|gb|ACY32247.1| transcriptional regulator, XRE family [Comamonas testosteroni
          CNB-2]
          Length = 99

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R  R     +Q+   +  G  +S++  +E G+  + + NM  +   LD    +
Sbjct: 3  KAFGQAVRECRSARGFSQEGFAHYCGLDRSYMGGVERGERNVTLVNMERIIAALDMKPSE 62

Query: 80 LL 81
            
Sbjct: 63 FF 64


>gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1]
 gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1]
          Length = 181

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+  R     S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341]
 gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341]
          Length = 181

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +  LTQ+E+  RT  ++ +IS++E   ++ +++    +   L        
Sbjct: 5  GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63


>gi|302186784|ref|ZP_07263457.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          syringae 642]
          Length = 74

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F      IRK    +Q+ +   +G A+S++  +E G+  I + N+  LA  L     
Sbjct: 6  RTAFGLRLIEIRKAKGWSQERLALESGLARSYLGGVERGQRNIALLNIYKLAEALAVTPG 65

Query: 79 KLL 81
           L+
Sbjct: 66 SLM 68


>gi|288924207|ref|ZP_06418242.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288344443|gb|EFC78937.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 208

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R++  L+  E+  + G A+  +S+LE       +D +  +A  L  P+ +L
Sbjct: 15 VVARNIRLLRQQRGLSLAELARQAGLAKQTLSKLEQSSGNPTVDTLFSIASALGVPVTRL 74

Query: 81 L 81
          +
Sbjct: 75 V 75


>gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 181

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +N+R +  LTQ+E+  RT  ++ +IS++E   S+ +I+ +  L   L        
Sbjct: 5  GNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREISSPSIETLFSLLEVLGISAKDFF 63


>gi|303229713|ref|ZP_07316499.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302515610|gb|EFL57566.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 127

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 3/83 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-- 58
          MP  +R+         ++ M   +    +R    ++Q+++ +  G ++S++S+LE G   
Sbjct: 8  MPAYRRNHYQDPK-FQQQYMCLGHKISTLRTSMGISQRQLADVVGISRSYLSKLECGYGI 66

Query: 59 STINIDNMIILAHTLDTPLWKLL 81
          S ++I+ +  +A+ L+    +LL
Sbjct: 67 SGVSIEVVFKIAYCLNVSTSQLL 89


>gi|293980676|ref|YP_003543434.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292677693|dbj|BAI99208.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 77

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+   N R  R + +++Q E+  R+G   S++S +E G+    ++ +  +A  L   +  
Sbjct: 14 MLVGRNCRERRVQLEMSQTELSERSGVTASYLSRIENGRGNPTLELLDSIAGALGCHVVD 73

Query: 80 LLK 82
          L +
Sbjct: 74 LFR 76


>gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
          Length = 183

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
          Length = 183

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          X98]
 gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          X98]
 gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
          Length = 183

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|84388954|ref|ZP_00991162.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01]
 gi|84377018|gb|EAP93890.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01]
          Length = 70

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RK+  ++Q ++       +S++  +E G+  I +D +  LA  L   + +LL
Sbjct: 8  FGMKLREVRKKNGISQDKLALIADIDRSYVGRIERGEVNITLDKVYCLAQALKCNVTELL 67


>gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus
          JA2]
 gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus
          JA2]
          Length = 189

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R+ A L+Q  +   +G ++  I  LE G + I++  +  LA  L      L+
Sbjct: 18 VGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTNISLSRLDRLAEALGVGFADLV 77

Query: 82 K 82
          +
Sbjct: 78 R 78


>gi|16126939|ref|NP_421503.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
          CB15]
 gi|13424293|gb|AAK24671.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
          CB15]
          Length = 74

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+   L Q E+ +  G   +++S +ETGK  + +  +  LA  L  P   L
Sbjct: 11 VVGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLASALRVPETDL 70

Query: 81 L 81
          +
Sbjct: 71 V 71


>gi|163735623|ref|ZP_02143054.1| DNA-binding protein, putative [Roseobacter litoralis Och 149]
 gi|161391051|gb|EDQ15389.1| DNA-binding protein, putative [Roseobacter litoralis Och 149]
          Length = 70

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N ++ R+   ++Q+E+ +R    + ++ ++E  K + ++  +  +A  L+    
Sbjct: 4  KERVGLNLQDARRAKGISQEELAHRASVNRGYVGKIENAKYSASLTTLEKIAQALNIDPS 63

Query: 79 KLLKP 83
          +LLKP
Sbjct: 64 ELLKP 68


>gi|254190407|ref|ZP_04896915.1| probable transcription regulator protein [Burkholderia
          pseudomallei Pasteur 52237]
 gi|157938083|gb|EDO93753.1| probable transcription regulator protein [Burkholderia
          pseudomallei Pasteur 52237]
          Length = 109

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           R +  LS       +      +  R     +Q+ +       +++IS +E G +  +++
Sbjct: 4  PRSDTSLSRPAPIS-IALGKRIKQCRHAVDKSQETLAFEAHVDRTYISAIERGVANPSVE 62

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  + H L+  L +L  P
Sbjct: 63 TLANICHALNVTLSELFAP 81


>gi|226309394|ref|YP_002769354.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226188511|dbj|BAH36615.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
           PR4]
          Length = 137

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           D           R  +    R +R++   T  ++  + G ++ ++SE+E GK   + + +
Sbjct: 33  DPAVAVRKPPLIREAYGRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERGKKEPSSEIL 92

Query: 67  IILAHTLDTPLWKLL 81
             +   L  PL  LL
Sbjct: 93  RAICEALGMPLEHLL 107


>gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320]
 gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320]
 gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 192

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P              N  + +R+   L+  E+  ++G +++ +S+LE+G S   ID +  
Sbjct: 3  PQSPKKT---NEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEA 59

Query: 69 LAHTLDTPLWKLL 81
          +A  L  PL  L 
Sbjct: 60 IAIALGFPLGDLF 72


>gi|255316571|ref|ZP_05358154.1| hypothetical protein CdifQCD-7_19592 [Clostridium difficile
           QCD-76w55]
          Length = 227

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 8   EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           E  L +AI  E+  F+ N  N RK+  +TQKEI  +TG  Q  IS +ETG     + N+I
Sbjct: 28  ERMLVNAIHVEKD-FIQNLVNFRKKQNITQKEIAEKTGLTQQAISGIETGGRKPTLINLI 86

Query: 68  ILAHTLDTPLWKLL 81
                +   +  L 
Sbjct: 87  RYLQGIGININDLF 100


>gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium
          acetobutylicum ATCC 824]
 gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium
          acetobutylicum ATCC 824]
 gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium
          acetobutylicum EA 2018]
          Length = 123

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RKE  LTQ+++   TG + S IS+LE GK T +I+ +  L++  +  + +L
Sbjct: 1  MLGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDEL 60


>gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans
          ATCC 700633]
 gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans
          ATCC 700633]
          Length = 180

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           ++ + +R +  LTQ+E+  RT  ++ +IS+LE   S+ ++D    +   L        +
Sbjct: 4  GSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCAPKDFFE 63


>gi|300690029|ref|YP_003751024.1| transcription regulator protein [Ralstonia solanacearum PSI07]
 gi|299077089|emb|CBJ49709.1| putative transcription regulator protein [Ralstonia solanacearum
          PSI07]
          Length = 113

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R          IL          +  R  A  +Q+ +       +++IS +E G +  +
Sbjct: 8  KRPEPSTSRPAPILTA---LGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPS 64

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          ++ +  + + L+  L +L  P
Sbjct: 65 VETLANICYALNVTLAELFGP 85


>gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 171

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E  L+  E+  R G  +  +SE+E G     ++ +  L   LD PL  LL
Sbjct: 6  VGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPLDVPLTALL 65


>gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 158

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322]
 gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200]
 gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
 gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
 gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342]
 gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62]
 gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          OG1RF]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
 gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
 gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
 gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + IR+E KLT  E+   TG ++  +S++E G +   I+ +  +++ L+ P   L
Sbjct: 6  IIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPYTYL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|257455466|ref|ZP_05620700.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60]
 gi|257447129|gb|EEV22138.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60]
          Length = 87

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + + F    R IRK+  ++Q+++       +S++ ++E G+  + +  +  ++  L   
Sbjct: 14 PQIVAFGKRIRTIRKQKGISQEKLALLAQIDRSYMGKIERGEFNLTLTKIYQISEALQVS 73

Query: 77 LWKLLK 82
          +  L +
Sbjct: 74 VVTLFQ 79


>gi|255103016|ref|ZP_05331993.1| putative regulatory protein [Clostridium difficile QCD-63q42]
          Length = 122

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + KLTQ+ +  +   +   +S +ETG S++++  ++ +A+TL   + +
Sbjct: 6  KFIGQRIKIARIKKKLTQEVLSEKINVSPQHVSNIETGNSSVSLPTLVAIANTLGVSVDE 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|291536677|emb|CBL09789.1| transcriptional regulator, XRE family [Roseburia intestinalis
          M50/1]
          Length = 68

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RKE  ++Q+++       +++++ +E+GK   ++ ++  +   LD    +  K
Sbjct: 7  GSRIKELRKEKGISQEKLAFSADLDRTYVAGVESGKRNPSVKSLEKILVALDVSFEEFFK 66


>gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles
          DSM 14600]
 gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles
          DSM 14600]
          Length = 141

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N   +RK   L+Q+E+  + G ++  +S+ ETG+S  +I+   +LA      +  
Sbjct: 1  MSFADNLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|148253025|ref|YP_001237610.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405198|gb|ABQ33704.1| putative transcriptional regulator, XRE family [Bradyrhizobium
          sp. BTAi1]
          Length = 75

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N R  R + ++TQ+E+    G +  ++  +E G  + ++  +  +A  L     
Sbjct: 4  KEIMAVNLRRKRHDLEMTQEELAEHAGLSAHYVGAIERGDVSASVTVLGQIADALGIEPG 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 DLLR 67


>gi|222080797|ref|YP_002542525.1| transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221725476|gb|ACM28565.1| transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 189

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R +RK A L+Q  +   +G ++  I  +E G + I++ ++  LA  L      L++
Sbjct: 20 NLRRLRKSAGLSQTALAEASGISRRMIIAVEAGDANISLSSLDKLAAALGVDFVDLVR 77


>gi|121595882|ref|YP_987778.1| XRE family transcriptional regulator [Acidovorax sp. JS42]
 gi|120607962|gb|ABM43702.1| transcriptional regulator, XRE family [Acidovorax sp. JS42]
          Length = 79

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F      IRK    +Q+ +   +G A+S++  +E G+  I + N+  LA  L     
Sbjct: 6  RLRFGLKLIEIRKTRGWSQERLALESGLARSYLGGVERGQRNIALLNIFKLAEALGVEPS 65

Query: 79 KLLK 82
           LL+
Sbjct: 66 VLLE 69


>gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus
          rhamnosus HN001]
 gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator
          [Lactobacillus rhamnosus GG]
 gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator
          [Lactobacillus rhamnosus Lc 705]
 gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus
          rhamnosus HN001]
 gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator
          [Lactobacillus rhamnosus GG]
 gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator
          [Lactobacillus rhamnosus Lc 705]
 gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 179

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R++R    LTQ+E+  RT  ++ +IS++E  +S+ +++    +   L        +
Sbjct: 4  GSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPADFFR 63


>gi|241662630|ref|YP_002980990.1| XRE family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864657|gb|ACS62318.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D]
          Length = 107

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          + +      + I           +  R EA+LTQ+++ +     +S++S +E G +  +I
Sbjct: 6  KPKASKDKRNPIATA---IGKRVKVCRVEAELTQEQLAHEALVDRSYVSSIERGVANPSI 62

Query: 64 DNMIILAHTLDTPLWKLLKP 83
          + +  L + +   L +L +P
Sbjct: 63 ETLANLCYCMGITLSRLFEP 82


>gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6]
 gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6]
          Length = 93

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L+D + + R       R +R  A L+Q ++ +R G     IS  E G   I+ID    +A
Sbjct: 20 LADQVQQHRWDVGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIA 79

Query: 71 HTLDTPLWKLLK 82
            L  P W+L +
Sbjct: 80 TALGQPSWRLFR 91


>gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21172]
          Length = 179

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  +
Sbjct: 4  GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFE 63


>gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612]
 gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612]
          Length = 183

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + +R+E KL+ +E+   +G ++S ++++E G+    I  +  L++ +  P   
Sbjct: 6  QIIAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGNPTISTLWKLSNGMGVPFDA 65

Query: 80 L-LKP 83
          L ++P
Sbjct: 66 LTVRP 70


>gi|225378330|ref|ZP_03755551.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM
           16841]
 gi|225209767|gb|EEG92121.1| hypothetical protein ROSEINA2194_03991 [Roseburia inulinivorans DSM
           16841]
          Length = 147

 Score = 60.8 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             ++    R+ A LTQK++  +TG  QS IS+LE G +  +I  +  LA  +D  L    
Sbjct: 84  LASSLARAREYAMLTQKQLSEKTGIYQSDISKLERGNANPSILTLKRLADAMDMTLKIEF 143

Query: 82  KP 83
            P
Sbjct: 144 VP 145


>gi|330968428|gb|EGH68688.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 50

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +TQ+E  +R GFA++++S +ETG +  ++D +  LA  L++ L  L 
Sbjct: 1  MTQEEFADRCGFARTYMSRIETGGANPSLDAINTLAVALNSDLESLF 47


>gi|94496789|ref|ZP_01303364.1| transcriptional regulator, XRE family protein [Sphingomonas sp.
          SKA58]
 gi|94423802|gb|EAT08828.1| transcriptional regulator, XRE family protein [Sphingomonas sp.
          SKA58]
          Length = 73

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 38/64 (59%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R++ ++TQ+E+ +RTG +  ++  +E  + +++I  +  LA  +D    
Sbjct: 4  KDVLARNLRLLRQKKEITQEELADRTGLSSRYVGSIERARVSVSITVLGKLALAMDVDPC 63

Query: 79 KLLK 82
          +L++
Sbjct: 64 ELIR 67


>gi|332527240|ref|ZP_08403308.1| SgrAlc control protein [Rubrivivax benzoatilyticus JA2]
 gi|332111660|gb|EGJ11641.1| SgrAlc control protein [Rubrivivax benzoatilyticus JA2]
          Length = 86

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D  HL    + ER  F    R +R+    +Q+ +  R    ++++ E+E   +  ++   
Sbjct: 6  DARHLPHEGVAER--FGRTVRRLRQARGWSQELLAARAELNRTYMGEIERASAMPSLQTA 63

Query: 67 IILAHTLDTPLWKLLK 82
            LA  L+ PL +LL+
Sbjct: 64 AKLAQALEVPLAELLQ 79


>gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
 gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
          Length = 121

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R IR +  LTQ+E+  R     S+I ++E G    ++  +  +A  L+  L  +L+
Sbjct: 11 GKRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKALNVSLDYVLE 70


>gi|260221082|emb|CBA29291.1| hypothetical protein Csp_A11410 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 97

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK  KLTQ E   +   A++++S +E+GK+  ++  +  ++  L  PL KLL
Sbjct: 5  LGLRIEENRKIQKLTQIEFAEKCNIARNYLSTIESGKANPSLAVLFTISDQLGVPLCKLL 64

Query: 82 K 82
          +
Sbjct: 65 Q 65


>gi|39935312|ref|NP_947588.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          CGA009]
 gi|39649164|emb|CAE27684.1| possible transcriptional regulator, XRE family [Rhodopseudomonas
          palustris CGA009]
          Length = 81

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N RN R+  +L+Q+E+ +R    +++IS LE      +ID +  LAH L     
Sbjct: 4  REVLALNLRNCRQAQELSQEELAHRAEIDRTYISSLERCVYAASIDVLDRLAHVLGVEAA 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 DLLR 67


>gi|257061988|ref|YP_003139876.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256592154|gb|ACV03041.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 333

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    IR    L+Q+ +       +++IS LE GK   ++  +  +   LD  + ++ 
Sbjct: 9  LGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEIF 68

Query: 82 K 82
          +
Sbjct: 69 Q 69


>gi|218248928|ref|YP_002374299.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218169406|gb|ACK68143.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 333

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    IR    L+Q+ +       +++IS LE GK   ++  +  +   LD  + ++ 
Sbjct: 9  LGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDIIEIF 68

Query: 82 K 82
          +
Sbjct: 69 Q 69


>gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis EO147]
 gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia
          oklahomensis C6786]
          Length = 95

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA     P+ +LL
Sbjct: 8  FGAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLL 67

Query: 82 KP 83
           P
Sbjct: 68 PP 69


>gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce
           56']
 gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce
           56']
          Length = 357

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 8   EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
            P  + + L    I   N R +R +  L+ + +   +G +++ +S++E G+ST  I+ + 
Sbjct: 165 APQDASSALTG--IVGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQSTPTINVLW 222

Query: 68  ILAHTLDTPLWKLL 81
            +A  L  P   L+
Sbjct: 223 KIARALGVPFSALI 236


>gi|319651076|ref|ZP_08005210.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2]
 gi|317397246|gb|EFV77950.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2]
          Length = 117

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +N R +RK+ KLTQ+E+   +G   S+++ +E G+  I +  +  +   L     +
Sbjct: 9  KLVGSNIRELRKQKKLTQEELAELSGLQYSFLAGVERGERNITLQTLEKIIVGLKETPSR 68

Query: 80 LL 81
          L 
Sbjct: 69 LF 70


>gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130]
 gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130]
          Length = 197

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
             +L+D    + M   N  R +RK   LT  E+  R G +  +IS++E G S+ +ID++
Sbjct: 4  AAENLADLNASDAMALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDL 63

Query: 67 IILAHTLDTPL 77
            LA   D P+
Sbjct: 64 RALAAAFDVPI 74


>gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain
          [Oceanicola batsensis HTCC2597]
 gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain
          [Oceanicola batsensis HTCC2597]
          Length = 213

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
               +    + R       R +R+   LT + I +R+G A S IS++E G      D  
Sbjct: 8  SSSPDTPPAEQGRAELGQRIRQLREARGLTLQTIADRSGLAISTISKIERGLMAPTYDRF 67

Query: 67 IILAHTLDTPLWKLLKP 83
            LA  L   +  L  P
Sbjct: 68 SGLARGLGVDVTHLFSP 84


>gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
          Length = 107

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     +++RK+A LTQ E+  +   +   + E+E G+    ++++  L+  LD  L K
Sbjct: 6  EILGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGNPTLESLHNLSVALDISLMK 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427]
 gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum
          DSM 5427]
          Length = 179

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +RK+  LTQ+E+ +R   ++ +IS++E G ++ +I  +I +   L T L    
Sbjct: 4  GAKINQLRKKNGLTQEELADRCELSKGFISQVERGLTSPSIATLIDILECLGTNLKDFF 62


>gi|284053790|ref|ZP_06384000.1| hypothetical protein AplaP_20232 [Arthrospira platensis str.
          Paraca]
 gi|291570058|dbj|BAI92330.1| type I restriction-modification system S subunit [Arthrospira
          platensis NIES-39]
          Length = 82

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   ++Q+E+  R    +++IS LE G    ++  ++ LA  L   + +LL
Sbjct: 16 IRQHRRAVGISQEELGLRCDLDRTYISGLERGVRNPSLTAIVALAEGLGITVSQLL 71


>gi|218532605|ref|YP_002423421.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gi|218524908|gb|ACK85493.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
          Length = 86

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R +R    L+Q+ +    G  ++++  LE       +D +  +A  L  PL 
Sbjct: 4  RALVAWNLRRVRVAQGLSQERLAADAGVDRAYLGGLERQAENPTVDLLDKVAEALAVPLG 63

Query: 79 KLL 81
          +L 
Sbjct: 64 ELF 66


>gi|119512219|ref|ZP_01631308.1| Transcriptional Regulator, XRE family protein [Nodularia
          spumigena CCY9414]
 gi|119463117|gb|EAW44065.1| Transcriptional Regulator, XRE family protein [Nodularia
          spumigena CCY9414]
          Length = 81

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  R E  ++Q+E+  R    +++IS +E G    ++  ++ LA+ L   +  LL
Sbjct: 12 LGSLVRKCRTEQGISQEELGLRANLDRTYISGVERGVRNPSLTALVSLANGLGISVSILL 71

Query: 82 K 82
          +
Sbjct: 72 E 72


>gi|259416828|ref|ZP_05740748.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
 gi|259348267|gb|EEW60044.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
          Length = 216

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 5  KRDEPHLSDAI---------LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55
          K+D P  SD            + R+      + +R  A +T ++   RTG A S I ++E
Sbjct: 6  KKDSPFSSDVQAALLDDSEKQQIRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIE 65

Query: 56 TGKSTINIDNMIILAHTLDTPLWKLL 81
           GK + + +N++ LA      L KL+
Sbjct: 66 NGKVSPSFENLLRLARGYGVGLEKLI 91


>gi|87308687|ref|ZP_01090827.1| transcriptional regulator, XRE family protein [Blastopirellula
          marina DSM 3645]
 gi|87288779|gb|EAQ80673.1| transcriptional regulator, XRE family protein [Blastopirellula
          marina DSM 3645]
          Length = 73

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R +   +Q+   +     +++I  +E G+  + + N+  +A  L   L +L+
Sbjct: 11 FGARVRELRLQQDYSQEAFAHACELDRTYIGGIERGERNLALRNIERIAEALGVTLAELM 70

Query: 82 K 82
          K
Sbjct: 71 K 71


>gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 255

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N    +RKE   +Q+ +    G ++  +S+ E  +++ + DN+I LA      L +LL
Sbjct: 6  ANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEASPDTDNLIELAKLYGISLDQLL 64


>gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424]
 gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424]
          Length = 181

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +  LTQ+E+  RT  ++ +IS++E   ++ +++    +   L        
Sbjct: 5  GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILEVLGCAPKDFF 63


>gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans
          DSM 10331]
 gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium
          ferrooxidans DSM 10331]
          Length = 205

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R++  L+   +  RTG ++ ++S +E    + +ID+++ +A  +   + 
Sbjct: 5  RFPIGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGVSPSIDSLVAIADAVGLAVA 64

Query: 79 KLL 81
           + 
Sbjct: 65 DVF 67


>gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica
          ATCC 39073]
 gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica
          ATCC 39073]
          Length = 178

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK- 79
          +     R +R+E  ++ K++  +TG   S++S++E   +  +I ++  +A  LD P++  
Sbjct: 1  MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYF 60

Query: 80 LLKP 83
          LL P
Sbjct: 61 LLNP 64


>gi|262370916|ref|ZP_06064240.1| DNA methyltransferase [Acinetobacter johnsonii SH046]
 gi|262314278|gb|EEY95321.1| DNA methyltransferase [Acinetobacter johnsonii SH046]
          Length = 68

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK  KL+Q+ +       +S++  +E G+  + I+ +  LA  LD P+  LL
Sbjct: 8  FGLKVREQRKLKKLSQERLALLCNIDRSYMGRIERGEVNVTIEKVYELAKALDIPVINLL 67


>gi|260911956|ref|ZP_05918520.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon
          472 str. F0295]
 gi|260633903|gb|EEX52029.1| hypothetical protein HMPREF6745_2475 [Prevotella sp. oral taxon
          472 str. F0295]
          Length = 71

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            L ER        ++R+EAKL+Q E+  + G  +  IS +E+G+ ++ +D +  +A  L
Sbjct: 5  KELAERERIGQKIASMRQEAKLSQAELGKKCGLERFHISRIESGRHSVGLDTLAAIARAL 64

Query: 74 DTPL 77
             L
Sbjct: 65 GKTL 68


>gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 225

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F     ++R E  LTQ+E+    G A S IS+ E+GKS   +  ++ LA  L     +
Sbjct: 3  ETFAERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADALGVSADE 62

Query: 80 L 80
          L
Sbjct: 63 L 63



 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           F +     R  A  ++K++   TG +   ++++E G    + +++  +AH L T +  L
Sbjct: 80  FSSRLIAARANAAFSRKKLCEATGLSGDDLADMELGDLLPSPEDVKKIAHALGTSVDSL 138


>gi|296450733|ref|ZP_06892486.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296260577|gb|EFH07419.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
          Length = 130

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R ++      A+  +        +  R+   LTQ+++      + + +S +E G     +
Sbjct: 16 RPKNSSKGGAAM--DLKAVGQRIKMAREAKGLTQEDLAAMVELSPTHVSVIERGLKAAKL 73

Query: 64 DNMIILAHTLDTPLWKLL 81
          D  + +A+ L+     LL
Sbjct: 74 DTFVAIANALEVSADSLL 91


>gi|187477387|ref|YP_785411.1| transcriptional regulator [Bordetella avium 197N]
 gi|115421973|emb|CAJ48494.1| putative transcriptional regulator [Bordetella avium 197N]
          Length = 177

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                    N R +R E  L+Q  +  R G ++  I  LE+G++ I++  + ++A  LD
Sbjct: 2  SEPVLEHVSANVRRLRAERGLSQTALAARAGLSRRMIVGLESGEANISLAKLGLIATALD 61

Query: 75 TPLWKLL 81
              +L+
Sbjct: 62 VNFIELV 68


>gi|300787181|ref|YP_003767472.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299796695|gb|ADJ47070.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 201

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +
Sbjct: 25 EIIAASLRRERTRAGLSLTEVARRAGLAKSTLSQLESGTGNPSVETLWALGVALDVPFSR 84

Query: 80 LLKP 83
          L++P
Sbjct: 85 LVEP 88


>gi|299537817|ref|ZP_07051106.1| putative HTH-type transcriptional regulator [Lysinibacillus
          fusiformis ZC1]
 gi|298726796|gb|EFI67382.1| putative HTH-type transcriptional regulator [Lysinibacillus
          fusiformis ZC1]
          Length = 184

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 37/64 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++F  N + IR+  KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L     +
Sbjct: 6  LVFARNLKAIREREKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLRVSFTE 65

Query: 80 LLKP 83
          L+ P
Sbjct: 66 LMHP 69


>gi|160894239|ref|ZP_02075016.1| hypothetical protein CLOL250_01792 [Clostridium sp. L2-50]
 gi|156863940|gb|EDO57371.1| hypothetical protein CLOL250_01792 [Clostridium sp. L2-50]
          Length = 120

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N R  R   KL Q+++  +T    ++I  +E G+   +++  I + + L   
Sbjct: 16 GKNIRKFRLAKKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKILNALGVS 69


>gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae
          C87]
 gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae
          C87]
          Length = 179

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T      +
Sbjct: 4  GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSASDFFQ 63


>gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 190

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  RK  KLT KE+  RTG +  +IS++E  ++  ++ ++  +A   D P++ L
Sbjct: 1  MLGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVL 60

Query: 81 L 81
          +
Sbjct: 61 M 61


>gi|225619797|ref|YP_002721054.1| putative transcriptional regulator [Brachyspira hyodysenteriae
          WA1]
 gi|225214616|gb|ACN83350.1| putative transcriptional regulator [Brachyspira hyodysenteriae
          WA1]
          Length = 139

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R IRK    T  EI   +G +  ++  +E GK  I+I N+  +A+ L+ P+  L 
Sbjct: 39 VGNNIRAIRKSQTKTISEIAEMSGISAKYLQSVEVGKRNISITNLNKIANALNVPIGILF 98


>gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20]
          Length = 80

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +      F    R  R++  L+Q+++  RT    S+I ++E G+  +++ N++ +AH L
Sbjct: 8  PLSPATGEFGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHAL 67

Query: 74 DTPLWKLL 81
          DT    L+
Sbjct: 68 DTDAGGLV 75


>gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis
          DSM 12885]
 gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter
          marianensis DSM 12885]
          Length = 216

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
               R++R++  ++ +++  R+G +++++S+LE       ++D ++ +A  L   L +L
Sbjct: 3  VGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVILRIATALGVSLTEL 62

Query: 81 LKP 83
          L P
Sbjct: 63 LGP 65


>gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella
          formatexigens DSM 14469]
 gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella
          formatexigens DSM 14469]
          Length = 185

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R++R    LTQ+E+ +R    + +IS+LE G+ + ++  ++ L   L T      K
Sbjct: 11 GKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQVSPSVVTLLDLIECLGTTASDFFK 70


>gi|149179178|ref|ZP_01857746.1| transcriptional regulator, XRE family protein [Planctomyces maris
           DSM 8797]
 gi|148841996|gb|EDL56391.1| transcriptional regulator, XRE family protein [Planctomyces maris
           DSM 8797]
          Length = 160

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 5   KRDEPHLSDAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           + D  H     +++ M F        RK AK++Q+ +  +TG  QS IS LE+GK + + 
Sbjct: 80  RLDLDHEPGEEIQKWMNFVGKKIHRYRKAAKMSQEVLSEKTGLPQSHISRLESGKHSPSN 139

Query: 64  DNMIILAHTLDTPLWKLLKP 83
             +  +A  LD  + KLL P
Sbjct: 140 ATLKKIAAALDIEI-KLLDP 158


>gi|134288001|ref|YP_001110165.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134132651|gb|ABO60277.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
          G4]
          Length = 79

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R    F    R +R++  L+QK++    G  +++IS LE G+ +  +++++ LA  L  
Sbjct: 2  ERHNRCFGRVLRRLRRDMHLSQKDLAVHAGVDRTYISLLELGRRSPTLESIVALAAALKI 61

Query: 76 PLWKLL 81
          PL +L 
Sbjct: 62 PLSRLF 67


>gi|163797612|ref|ZP_02191561.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199]
 gi|159177087|gb|EDP61649.1| hypothetical protein BAL199_18436 [alpha proteobacterium BAL199]
          Length = 125

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 7   DEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           DE  +  A + +R++   +  R  R+   L+  E+  R G +Q+++S+LETGK   ++  
Sbjct: 49  DEEEMLPAAMVDRLLAGESALRVWREHRGLSASELAERAGLSQAYVSQLETGKRDGSVAA 108

Query: 66  MIILAHTLDTPLWKL 80
           M  LA  L   +  L
Sbjct: 109 MGSLAQALGVMIDDL 123


>gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185]
 gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185]
 gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 135

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK A LTQ E+  +T  ++S+I ++E  +   ++  + ++A    T L  
Sbjct: 1  MSIGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYNPSLSTLELIAKATGTSLSA 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|168212390|ref|ZP_02638015.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|170716178|gb|EDT28360.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 180

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M      + +RK+ KLTQK +   TG ++S++S++E  +   + D +  LA +L   L
Sbjct: 1  MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDL 58


>gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 112

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R+ +++TQ+++      +  +I  LE G  + +++ +  +A  L   L  L+
Sbjct: 11 GDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGTRSPSLETLAKIAQLLRVSLDDLV 69


>gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787]
 gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787]
          Length = 122

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R +  LTQ+ I ++ G     +S +ETG +++++  ++ +A+TL   +  
Sbjct: 6  KAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLTVSVND 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 119

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +ER+I      +  RKE  ++Q E+  R   +  ++S++E GKS   +  +I ++  L  
Sbjct: 5  KERLIPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64

Query: 76 PLWKLLKP 83
             KLL+P
Sbjct: 65 STDKLLRP 72


>gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
          Length = 108

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    R++R+   +TQ+++  R G +   + E+E G+    + N+  L+  L+  L  
Sbjct: 6  KVFGKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGRGNPTLVNIERLSAALEEDLAS 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|251777920|ref|ZP_04820840.1| conserved hypothetical protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243082235|gb|EES48125.1| conserved hypothetical protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 376

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L ER ++    +  R    L+Q+++  + G  +  IS  E     ++  N++ L+ TLD
Sbjct: 2  SLAERKVYGQRIKQGRILRGLSQEQLGKKVGVTRQAISNCEKDNINLSTTNLLKLSETLD 61

Query: 75 TPL 77
           PL
Sbjct: 62 LPL 64


>gi|171322013|ref|ZP_02910893.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171092688|gb|EDT37979.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 73

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R+    +Q+++    G  +S++ E+E G++  +I     +A   +  +  LL
Sbjct: 8  FGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFEVSISTLL 67


>gi|152977654|ref|YP_001377171.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152026406|gb|ABS24176.1| putative transcriptional regulator, XRE family [Bacillus
          cytotoxicus NVH 391-98]
          Length = 120

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R +RK   L+Q+E+  +     ++I ++E G+  + + ++  +   LD  L + 
Sbjct: 7  IIGLQIRILRKSKNLSQEELAFKANLHPTYIGQVERGEKNLTVSSLNTITTALDITLEEF 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325]
 gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325]
          Length = 181

 Score = 60.4 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +  LTQ+E+  RT  ++ +IS++E   ++ +++    +   L        
Sbjct: 5  GERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63


>gi|260888382|ref|ZP_05899645.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330838303|ref|YP_004412883.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260861918|gb|EEX76418.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329746067|gb|AEB99423.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 98

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +    RK  KLTQKE+  RTG +Q+ IS +ETG++  ++  M  LA  L   L  +  P
Sbjct: 32 RSLLEARKVTKLTQKELSARTGISQADISRIETGEANPSMQTMKRLAEGLGMQLRVMFVP 91


>gi|284042154|ref|YP_003392494.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946375|gb|ADB49119.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 86

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +D       IF    R +R    LTQ+ +   +G  +++I  +E G+       M+ LA 
Sbjct: 3  ADKQSNAHRIFGRAVRELRARRSLTQERLGFVSGLHRNYIGAIERGEINPTFRIMLKLAR 62

Query: 72 TLDTPLWKLLK 82
           LD PL ++++
Sbjct: 63 GLDVPLAEMIQ 73


>gi|197303466|ref|ZP_03168505.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC
          29176]
 gi|197297464|gb|EDY32025.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC
          29176]
          Length = 68

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  + +R++  L+Q++   +    +++ + +E GK  ++I N+  +A   +  L +L 
Sbjct: 6  FANRIKELRQQQGLSQEKFALKIDMDRTYYASVEAGKRNVSIKNIKKIADGFEISLEELF 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 123

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R++  L+++E     G +  +I +LE G+  +++  +I +A+ L   L  L+
Sbjct: 9  GKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLHVSLDYLV 67


>gi|308071047|ref|YP_003872652.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305860326|gb|ADM72114.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 129

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RK   +TQ+++   +    S+I +LE G+  + I  +  +A  L+T ++ 
Sbjct: 5  KLIGTKIRQFRKLRDITQEQLAEASDSTGSYIGKLERGEVNVQIKTLEKIAEALNTNVFA 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 153

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 5   KRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +++ P   D  + +   I   N R +RK   LTQ+ +    G   S IS +E G+   ++
Sbjct: 35  EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 94

Query: 64  DNMIILAHTLDTPLWKLL 81
            +MI L   L+    +L+
Sbjct: 95  PDMIKLCRALEADPVELV 112


>gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612]
 gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612]
          Length = 111

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK+A LTQ ++  + G   +++S +E G     ++  I LA+ L      
Sbjct: 4  KYLGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGAQLPRLETFINLANVLSVSADD 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 181

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|291528282|emb|CBK93868.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 104

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R+   LTQ+E+      + + +S +E G     +D  + +A+ LD     
Sbjct: 4  KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|217968788|ref|YP_002354022.1| XRE family transcriptional regulator [Thauera sp. MZ1T]
 gi|217506115|gb|ACK53126.1| transcriptional regulator, XRE family [Thauera sp. MZ1T]
          Length = 93

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R +R     +Q+ +   +G  +++++ +E     I++DN+  LA  L+    
Sbjct: 17 RRALAANVRRLRSARGWSQEVLAFESGLHRTFVAHVERAARNISLDNIARLAVALEVTAP 76

Query: 79 KLLK 82
           LL+
Sbjct: 77 DLLQ 80


>gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC
          27560]
 gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC
          27560]
          Length = 177

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R    LTQ+E+ +R    + +IS++E   ++ +I  ++ +   L T L    +
Sbjct: 4  GKKIKELRILKGLTQEELADRAELTKGFISQVERNHTSPSIATLVDILQCLGTDLKNFFE 63


>gi|302530030|ref|ZP_07282372.1| predicted protein [Streptomyces sp. AA4]
 gi|302438925|gb|EFL10741.1| predicted protein [Streptomyces sp. AA4]
          Length = 180

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R  A +    +   +G  +  +SELE G+    +D +  +A  L  PL  L
Sbjct: 15 VVGTRIRTLRTRAGVGLTTLAADSGLGKGTLSELENGRRNPTLDTLFAIATALSIPLSDL 74

Query: 81 L 81
          L
Sbjct: 75 L 75


>gi|167855811|ref|ZP_02478564.1| transcriptional regulator [Haemophilus parasuis 29755]
 gi|167853090|gb|EDS24351.1| transcriptional regulator [Haemophilus parasuis 29755]
          Length = 77

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N + +R +   +Q+ + N     ++++S +E  +  +++ N+  LA  L  P W+LLK
Sbjct: 2  AYNIQTLRVQKGWSQERLENECELDRTYVSAVEHCRWNVSLSNIEKLATALSCPAWQLLK 61


>gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus
          Ueda107]
 gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus
          Ueda107]
          Length = 72

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + +R   K+TQ+++  R G     IS +E G    + D +  LA  L  P+ 
Sbjct: 4  KKQFGKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQ 63

Query: 79 KLL 81
           L 
Sbjct: 64 SLF 66


>gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122]
 gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122]
          Length = 179

 Score = 60.4 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  K
Sbjct: 4  GNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFFK 63


>gi|2444013|gb|AAB71491.1| ORF6 [Bacillus pumilus]
          Length = 211

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +N  N RK  KL+Q+ +  + G ++  IS+ ET +S  ++DN+I LA   D+ + +
Sbjct: 2  MSLGSNISNKRKSLKLSQEYVAEQLGVSRQAISKWETNQSEPSMDNLIRLAELFDSDIKE 61

Query: 80 LLKP 83
          L+ P
Sbjct: 62 LVSP 65


>gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio
          magneticus RS-1]
 gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio
          magneticus RS-1]
          Length = 1199

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R++R+   LTQ  +  R+G +    +++E G +  ++  +   +  L      L
Sbjct: 9  LFGRRLRHVRRLCGLTQARLAERSGVSLEHCNKIERGAAAPSLAVIHAFSRALGVEPATL 68

Query: 81 LKP 83
            P
Sbjct: 69 FLP 71


>gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 201

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N  R++RK+  +T   +   TG +Q+ +S++E G +  +   +  LAH LD P
Sbjct: 20 VGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIP 74


>gi|311070540|ref|YP_003975463.1| XRE family transcriptional regulator [Bacillus atrophaeus 1942]
 gi|1293618|gb|AAC45059.1| BglII control element [Bacillus subtilis]
 gi|310871057|gb|ADP34532.1| transcriptional regulator, XRE family protein [Bacillus
          atrophaeus 1942]
          Length = 77

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F     +IR++  L+Q+++   +   +++I  +E G+  +++ N+  L++ L   + 
Sbjct: 4  RERFGKTVSSIRRKQNLSQEKLAEISKLDRTYIGGVERGERNLSLLNIERLSNALQMEIS 63

Query: 79 KLLK 82
          ++ +
Sbjct: 64 EVFR 67


>gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 208

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N + +RKE  L+Q+++      ++  IS+ ET K+   +DN+  LA   +  L +
Sbjct: 18 MTLGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAEPGVDNLKALADLYEVTLDQ 77

Query: 80 L 80
          L
Sbjct: 78 L 78


>gi|302340438|ref|YP_003805644.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301637623|gb|ADK83050.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 109

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N RN RK   L+Q E+  R   +   ++++E  +  +  D  + LA  L    ++
Sbjct: 8  ELLATNIRNARKSQGLSQMELAERAEISTGHMNDIERSRRWLGADTFVRLASALQLEPYQ 67

Query: 80 LLKP 83
          LL P
Sbjct: 68 LLLP 71


>gi|160892204|ref|ZP_02073207.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC
          8492]
 gi|270296185|ref|ZP_06202385.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156858682|gb|EDO52113.1| hypothetical protein BACUNI_04667 [Bacteroides uniformis ATCC
          8492]
 gi|270273589|gb|EFA19451.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 161

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + IL+ER    N    +RK+  +TQ+E+ N  G  +  I+++E G   ++ID +  +   
Sbjct: 10 EKILKERERIGNRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSIDILSKVTSA 69

Query: 73 LD 74
          L 
Sbjct: 70 LG 71


>gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 181

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
 gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
 gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
          Length = 181

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 181

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|323467533|gb|ADX71219.1| Predicted transcription factor [Lactobacillus helveticus H10]
          Length = 77

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R   KL+Q+ +    G  +++I  +E G+ +I++  ++ L   LD    +L 
Sbjct: 10 FGENLRALRLSRKLSQERLSELVGLDRTYIGLVERGEKSISLVYLVKLMSALDVNAEELF 69

Query: 82 K 82
          +
Sbjct: 70 R 70


>gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
 gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243]
          Length = 141

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 5   KRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +++ P   D  + +   I   N R +RK   LTQ+ +    G   S IS +E G+   ++
Sbjct: 23  EKNTPAYHDPLVQQYAFILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSV 82

Query: 64  DNMIILAHTLDTPLWKLL 81
            +MI L   L+    +L+
Sbjct: 83  PDMIKLCRALEADPVELV 100


>gi|300697135|ref|YP_003747796.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299073859|emb|CBJ53386.1| putative transcription regulator protein [Ralstonia solanacearum
           CFBP2957]
          Length = 126

 Score = 60.4 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R  A+ +Q+ +       +++IS +E G +  +++ +  + + L+  L +L 
Sbjct: 41  VGARIKQCRHAAEKSQERLAFEASVDRTYISSIERGIANPSVETLANICYALNVTLAELF 100

Query: 82  KP 83
            P
Sbjct: 101 AP 102


>gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces
          venezuelae ATCC 10712]
          Length = 190

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  RKE  LT   +  R G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|322806874|emb|CBZ04444.1| transcriptional regulator, MerR family [Clostridium botulinum
          H04402 065]
          Length = 147

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +F  N + IR+   L   E+   +G   S+IS +E G+     I  +  LA TL+  + +
Sbjct: 1  MFGKNIKRIRELKGLGVNELSRLSGVNASYISAMERGEKENPTITTLKKLADTLEVTVDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae
          bacterium D16]
 gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae
          bacterium D16]
          Length = 394

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK   +TQ+E+ ++ G +   +S  E+G S  ++  ++ LA  L   + +LL
Sbjct: 6  FAQRLRQYRKNKGMTQQELADQLGVSNKTVSRWESG-SYPDVTTLVALARVLGVTVDELL 64

Query: 82 KP 83
           P
Sbjct: 65 DP 66


>gi|229494729|ref|ZP_04388487.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121]
 gi|229318396|gb|EEN84259.1| helix-turn-helix domain protein [Rhodococcus erythropolis SK121]
          Length = 122

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D           R  +    R +R++   T  ++  + G ++ ++SE+E GK   + + +
Sbjct: 18 DPAVAVRKPPLIREAYGRVLREVRRDQDRTLDDVAAKVGMSKQYLSEIERGKKEPSSEIL 77

Query: 67 IILAHTLDTPLWKLL 81
            +   L  PL  LL
Sbjct: 78 RAICEALGMPLEHLL 92


>gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          SK119]
 gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          subsp. hominis C80]
 gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          SK119]
 gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis
          subsp. hominis C80]
          Length = 179

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +N+R++  LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T    
Sbjct: 1  MQIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGTTPSD 60

Query: 80 LLK 82
            K
Sbjct: 61 FFK 63


>gi|15020664|emb|CAC44539.1| restriction endonuclease control protein [Lactococcus lactis
          subsp. cremoris]
          Length = 77

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               ++RK   L+Q+++   +   ++++SE+E GK    I  +  +  + D  +    K
Sbjct: 11 GKTIAHLRKVHNLSQEDLAELSDTHRTYLSEVEGGKRNPTITVLKKMVDSFDISMSSFFK 70


>gi|310830110|ref|YP_003962467.1| toxin-antitoxin system [Eubacterium limosum KIST612]
 gi|308741844|gb|ADO39504.1| toxin-antitoxin system [Eubacterium limosum KIST612]
          Length = 110

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +   + R  R + KLTQ ++  R     +++S LE G     ++ +I ++  L+ P+
Sbjct: 2  DNKVIGRHIREARLDKKLTQYQLAERVHITPNYLSMLERGTHLPKLETLITISEALEVPV 61

Query: 78 WKLLK 82
            LL 
Sbjct: 62 SALLT 66


>gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 181

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|54023278|ref|YP_117520.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54014786|dbj|BAD56156.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 187

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D    + +I   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L  
Sbjct: 4  DDTATPQAVI-AASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGNPSLETLWALCV 62

Query: 72 TLDTPLWKLLKP 83
           LD P  +LL P
Sbjct: 63 ALDMPFSRLLDP 74


>gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
          Length = 132

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 33/71 (46%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + + +  +        R  R++  L+++E     G +  ++ +LE G+  +++  ++ + 
Sbjct: 1  MENKVEIDNKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGERQMSLPVLVKIV 60

Query: 71 HTLDTPLWKLL 81
          + L   L  L+
Sbjct: 61 NCLHVSLDYLI 71


>gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 187

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D P L         +     R  R E  L+   +    G  +  +SE+E G     +  +
Sbjct: 2  DSPDLP-------HLIGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGTRNPTLSTL 54

Query: 67 IILAHTLDTPLWKLL 81
            LA+ L  PL  LL
Sbjct: 55 YGLANALGRPLSWLL 69


>gi|182682772|ref|YP_001830970.1| conjugal transfer protein TrbA [Xylella fastidiosa M23]
 gi|182632882|gb|ACB93657.1| transcriptional regulator, XRE family [Xylella fastidiosa M23]
          Length = 118

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   +  E  +T+ E+  + G + S++S+L  GK+  ++  M  +A  L  PL  L
Sbjct: 5  IFFTNILRLLDERGMTKYELSEKAGISISFLSDLTNGKANPSLKIMEAIAEALKVPLTIL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 179

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+R   KLTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T      K
Sbjct: 4  GKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYASPSMETFLNILEVLGTSPSDFFK 63


>gi|85717711|ref|ZP_01048645.1| transcriptional regulator, XRE family protein [Nitrobacter sp.
          Nb-311A]
 gi|85695462|gb|EAQ33386.1| transcriptional regulator, XRE family protein [Nitrobacter sp.
          Nb-311A]
          Length = 71

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R + KLTQ+++  R+G +  ++  +E G  + ++  +  +A  L     
Sbjct: 4  KEVMAINMRRLRYDRKLTQEDLAARSGLSMRYVGSVERGAVSASVSVLGKVAEALGVDPC 63

Query: 79 KLLK 82
           L++
Sbjct: 64 DLIR 67


>gi|110800489|ref|YP_695467.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110675136|gb|ABG84123.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 180

 Score = 60.0 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M      + +RK+ KLTQK +   TG ++S++S++E  +   + D +  LA +L   L
Sbjct: 1  MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDL 58


>gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC
          3626]
 gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC
          3626]
          Length = 141

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  + +RKE  ++Q+++      ++  IS+ E+GK+  +IDN+I+L       L +L+
Sbjct: 3  FNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDELI 62


>gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium]
 gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 122

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R +   TQ+ + +R G +   +S +ETG S++++  ++ +A+ L   + +
Sbjct: 6  KAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLSVSVDE 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|2340851|emb|CAA74068.1| hypothetical protein [Ralstonia eutropha H16]
          Length = 105

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  +   +RK+   +Q+ +   +G ++S++S +E+GK  + + N+  LA TL  P  ++
Sbjct: 8  LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEM 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|126740274|ref|ZP_01755963.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126718729|gb|EBA15442.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 231

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 9   PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           PH   +  RE+++        R  R++ ++T  E+   TG +   +S++E G ++ ++  
Sbjct: 31  PHSLRSSDREKVLEVAIGREVRAFRRQKEITVAELAQITGLSIGMLSKIENGNTSPSLTT 90

Query: 66  MIILAHTLDTPL 77
           + ILA+ L  PL
Sbjct: 91  LQILANALSVPL 102


>gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630]
 gi|254975814|ref|ZP_05272286.1| putative regulatory protein [Clostridium difficile QCD-66c26]
 gi|255093200|ref|ZP_05322678.1| putative regulatory protein [Clostridium difficile CIP 107932]
 gi|255101354|ref|ZP_05330331.1| putative regulatory protein [Clostridium difficile QCD-63q42]
 gi|255307230|ref|ZP_05351401.1| putative regulatory protein [Clostridium difficile ATCC 43255]
 gi|255314943|ref|ZP_05356526.1| putative regulatory protein [Clostridium difficile QCD-76w55]
 gi|255517617|ref|ZP_05385293.1| putative regulatory protein [Clostridium difficile QCD-97b34]
 gi|255650728|ref|ZP_05397630.1| putative regulatory protein [Clostridium difficile QCD-37x79]
 gi|255656203|ref|ZP_05401612.1| putative regulatory protein [Clostridium difficile QCD-23m63]
 gi|260683814|ref|YP_003215099.1| putative regulatory protein [Clostridium difficile CD196]
 gi|260687474|ref|YP_003218608.1| putative regulatory protein [Clostridium difficile R20291]
 gi|296450363|ref|ZP_06892120.1| probable regulatory protein [Clostridium difficile NAP08]
 gi|296878775|ref|ZP_06902776.1| probable regulatory protein [Clostridium difficile NAP07]
 gi|306520643|ref|ZP_07406990.1| putative regulatory protein [Clostridium difficile QCD-32g58]
 gi|115251268|emb|CAJ69099.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|260209977|emb|CBA63985.1| putative regulatory protein [Clostridium difficile CD196]
 gi|260213491|emb|CBE05194.1| putative regulatory protein [Clostridium difficile R20291]
 gi|296260773|gb|EFH07611.1| probable regulatory protein [Clostridium difficile NAP08]
 gi|296430203|gb|EFH16049.1| probable regulatory protein [Clostridium difficile NAP07]
          Length = 112

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I  +  +  R +   +Q+ +  + G   ++I ++E  ++  +I+ ++ +A  LD PL  
Sbjct: 6  KIIGDRIKVYRTKLGYSQEFLAEKAGLHPTYIGQIERAETNTSINIIMKIATALDIPLEL 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme
          DSM 15981]
 gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme
          DSM 15981]
          Length = 177

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R    LTQ+E+ +RT  ++ +IS+LE   ++ +I  ++ +   L T + +
Sbjct: 1  MQIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 187

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRKE K TQ E+    GF +S +S++E G +   +  ++ +A  L   +  LL
Sbjct: 3  LGKRIRLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSDLL 62

Query: 82 KP 83
          +P
Sbjct: 63 EP 64


>gi|54298059|ref|YP_124428.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris]
 gi|53751844|emb|CAH13268.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris]
          Length = 86

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R IR     +Q+ +       ++++  +E G+  I+I N+I +A  L+  + +L+ 
Sbjct: 12 GDQIRTIRSSKGFSQEGLAAAATLGRTYMGRVERGEQNISIQNLIKIAFILNVNVGELVP 71

Query: 83 P 83
          P
Sbjct: 72 P 72


>gi|225028123|ref|ZP_03717315.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353]
 gi|224954593|gb|EEG35802.1| hypothetical protein EUBHAL_02393 [Eubacterium hallii DSM 3353]
          Length = 178

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               + +R +  LTQ+E+ +R   ++ +IS+LE   ++ +I  +  L   L T L
Sbjct: 3  LGEKIKELRNKQGLTQEELADRAELSKGFISQLERDMTSPSIATLEDLLQCLGTTL 58


>gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response
          [Carnobacterium sp. 17-4]
 gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response
          [Carnobacterium sp. 17-4]
          Length = 180

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +N+R +  LTQ+E+  RT  ++ +IS++E   S  +++    +   L        
Sbjct: 4  GNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKDFF 62


>gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 211

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 36/77 (46%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K  +   S  +  +        R +R+   LT  ++  RTG +  ++S+LE G +  ++ 
Sbjct: 12 KEADHASSRIVDEQAERVGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTRPSMV 71

Query: 65 NMIILAHTLDTPLWKLL 81
          ++  +A  L T   +L+
Sbjct: 72 SLDRIAKALGTTQVELI 88


>gi|78186555|ref|YP_374598.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78166457|gb|ABB23555.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 85

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R+ R    L+Q  +  + G  +S+I  +E G+  I + N + +A+ L   L +
Sbjct: 7  MCLGDQIRSERYRKNLSQLSLSQQCGLHRSYIGLIERGEKNITVINCMKVANALGISLSE 66

Query: 80 LL 81
          L+
Sbjct: 67 LI 68


>gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
          Length = 181

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|312197651|ref|YP_004017712.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311228987|gb|ADP81842.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 175

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   L+   +  R G  +  +SE+E G     +  +  LA  L+ PL  LL
Sbjct: 9  VGARLRATRQARDLSVGALAARAGVGKGSLSEIENGVRNPTLGTLYALAGALEVPLATLL 68


>gi|84499939|ref|ZP_00998205.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
 gi|84391873|gb|EAQ04141.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
          Length = 211

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
               +    F    R +R+   LT +++ +R G A S IS++E    +   D ++ LA 
Sbjct: 7  DKTTAKALTAFGQKVRTLRRGKGLTLQQVADRAGMAGSTISKIENSNLSPTFDGLLKLAR 66

Query: 72 TLDTPLWKLLK 82
           LD  L  LL+
Sbjct: 67 GLDVDLSTLLE 77


>gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC
          334]
 gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23]
 gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
 gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei
          8700:2]
 gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei
          ATCC 334]
 gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei
          BL23]
 gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
 gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei
          8700:2]
 gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein
          [Lactobacillus casei LC2W]
 gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein
          [Lactobacillus casei BD-II]
          Length = 179

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R++R    LTQ+E+  RT   + +IS++E  +S+ +++    +   L        +
Sbjct: 4  GSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPADFFR 63


>gi|310659824|ref|YP_003937545.1| hypothetical protein CLOST_2525 [Clostridium sticklandii DSM 519]
 gi|308826602|emb|CBH22640.1| protein of unknown function [Clostridium sticklandii]
          Length = 102

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M      R +R+   +TQ+E+     F+ S+I +LE  ++  +I  + I+A   + 
Sbjct: 1  MTIGERIRQLRRIKDVTQRELAESVNFSHSYIGDLERNRTNPSIKALEIIAEYFNV 56


>gi|225026228|ref|ZP_03715420.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353]
 gi|224956479|gb|EEG37688.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353]
          Length = 141

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                  +  R+   LTQ+E+      + + +S +E G     +D  + +A+ LD     
Sbjct: 41  KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 100

Query: 80  LL 81
           LL
Sbjct: 101 LL 102


>gi|169828925|ref|YP_001699083.1| putative HTH-type transcriptional regulator [Lysinibacillus
          sphaericus C3-41]
 gi|168993413|gb|ACA40953.1| Putative HTH-type transcriptional regulator [Lysinibacillus
          sphaericus C3-41]
          Length = 185

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF  N + IR+  KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 6  QLIFARNLKTIREREKLSLEKVSQLSGVSKAMIGQIERGESSPTLTTIWKIANGLKVSFT 65

Query: 79 KLL 81
          +L+
Sbjct: 66 ELI 68


>gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B]
 gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B]
 gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 179

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + +R  + LTQ+E+  R+   + +IS++E   ++ ++D+++ +   L T   +  
Sbjct: 4  GNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSEFF 62


>gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str.
          JGS1721]
 gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str.
          JGS1721]
          Length = 141

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  + +RKE  ++Q+++      ++  IS+ E+GK+  +IDN+I+L       L +L+
Sbjct: 3  FDNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDELI 62


>gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 181

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
 gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
          Length = 214

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 5  KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          K+D   L DA  +   +      R++R   ++T  E+  +TG +   +S++E G  + ++
Sbjct: 12 KQDPHALRDAREKNLEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISPSL 71

Query: 64 DNMIILAHTLDTPLWKLL 81
            +  LAH L  PL +L 
Sbjct: 72 TTISALAHALKVPLVQLF 89


>gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M]
 gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M]
          Length = 180

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R++  LT +++  R G  +S++S++E G+ST +I   + +A  LD  + +L 
Sbjct: 5  LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60


>gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5]
 gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5]
          Length = 207

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N + IRK   LTQ+E+  + G     +S++E G +    D +  LA  LD    +LL
Sbjct: 11 LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEILDVTPNELL 70


>gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 183

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R IRKE  LT K++ +  G ++++I   ETG+    + ++  LA  L   +  
Sbjct: 1  MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKALHVNVEA 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|194289198|ref|YP_002005105.1| XRE family transcriptional regulator [Cupriavidus taiwanensis LMG
          19424]
 gi|193223033|emb|CAQ69038.1| putative transcriptional regulator, xenobiotic response element
          (XRE) family [Cupriavidus taiwanensis LMG 19424]
          Length = 149

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  +   +RK+   +Q+ +   +G ++S++S +E+GK  + + N+  LA TL  P  ++
Sbjct: 8  LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTAEM 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 205

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E  LTQ+++  R   +++ +S+ ETG  + N+D++  +A   D  +  LL
Sbjct: 3  FGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDLL 62


>gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA]
 gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA]
          Length = 205

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E  LTQ+++  R   +++ +S+ ETG  + N+D++  +A   D  +  LL
Sbjct: 3  FGEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDLL 62


>gi|325110272|ref|YP_004271340.1| hypothetical protein Plabr_3728 [Planctomyces brasiliensis DSM
          5305]
 gi|325110633|ref|YP_004271701.1| hypothetical protein Plabr_4102 [Planctomyces brasiliensis DSM
          5305]
 gi|324970540|gb|ADY61318.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM
          5305]
 gi|324970901|gb|ADY61679.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM
          5305]
          Length = 73

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+E   +Q+         ++++  +E G+  + + N+  +A TL   L +L+
Sbjct: 11 FGQRVRALRREQGYSQESFAYACELDRTYMGGIERGERNVALRNIERIASTLGISLSELM 70


>gi|149175702|ref|ZP_01854321.1| restriction-modification system regulatory protein, putative
          [Planctomyces maris DSM 8797]
 gi|148845421|gb|EDL59765.1| restriction-modification system regulatory protein, putative
          [Planctomyces maris DSM 8797]
          Length = 73

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RKE   +Q+         ++++  +E G+  + + N+  +A TLD  L +L+
Sbjct: 11 FGQRVRKLRKEQGYSQENFAYACELDRTYVGGIERGERNLALRNIERIAKTLDISLAELM 70


>gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
 gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
          Length = 181

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|119385893|ref|YP_916948.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119376488|gb|ABL71252.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 85

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF +N R  R+   L+Q+E+ +R    +++IS LE      +ID +  LA  L+    
Sbjct: 4  REIFAHNLRAARQARGLSQEELAHRADIDRTYISSLERRVYGASIDVVDRLASVLEMEAS 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|220914255|ref|YP_002489564.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219861133|gb|ACL41475.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 210

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          ++ E     A  +   +     R+ R  A L+  E+  RTG +++ IS +ET  ++ ++ 
Sbjct: 15 QQAEAVADQAAGKLEQVIAAQVRHYRTAAGLSSAELAARTGLSKAMISRVETATTSCSLT 74

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  LA  L  P+  L +
Sbjct: 75 TLQRLADGLKVPVTALFR 92


>gi|223043812|ref|ZP_03613854.1| DNA-binding protein [Staphylococcus capitis SK14]
 gi|222442716|gb|EEE48819.1| DNA-binding protein [Staphylococcus capitis SK14]
          Length = 179

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R+    TQ+E+  RT  ++ +IS++E+  ++ +I+  + +   L T      +
Sbjct: 4  GYKLRNLRRIKNFTQEELAERTDLSKGYISQIESQHASPSIETFLNILEVLGTSASDFFQ 63


>gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 91

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G +  +I  +  LA      +  LL
Sbjct: 8  FGAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIASIVTVDKLARAFGVSIECLL 67

Query: 82 K 82
          +
Sbjct: 68 R 68


>gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 223

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+    + R++RK A LTQ+E+  R    +  +S  E GK+  +++ +  +A  L   L 
Sbjct: 4  RLSIAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTRPDVETLQAIADCLGVDLL 63

Query: 79 KLL 81
          ++L
Sbjct: 64 QVL 66


>gi|330816861|ref|YP_004360566.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327369254|gb|AEA60610.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 207

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R +R  A +T +++  R+G +++ +S++E G+ +  I     +A +L T L +
Sbjct: 26 EAFGARVRKLRAAAGMTLEQLSERSGVSRAMLSKVERGEKSPTIGIATRIAQSLRTSLTE 85

Query: 80 LL 81
          L+
Sbjct: 86 LV 87


>gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W]
 gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
 gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W]
 gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
          Length = 181

 Score = 60.0 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905]
 gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905]
          Length = 180

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R +  LTQ+E+  RT  ++ +IS+LE   ++ +I+ +  +   L +   +
Sbjct: 1  MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L]
 gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L]
 gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM
          771]
          Length = 383

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ I   N R IR+    TQ ++ +  G ++     +E G +T  +  +  +A  +   L
Sbjct: 2  DQKIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTTPKVSTLQNIASAVGVKL 61

Query: 78 WKLLKP 83
            L  P
Sbjct: 62 QDLFIP 67


>gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
 gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis
          L1-82]
 gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis
          L1-82]
 gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded
          beta-helix domain [Roseburia intestinalis XB6B4]
          Length = 183

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RM      + +R +  LTQ+E+ +R+   + +IS+LE  +++ +I  ++ +   L T   
Sbjct: 4  RMDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPA 63

Query: 79 KLLK 82
          +   
Sbjct: 64 EFFT 67


>gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC
          35704]
 gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC
          35704]
          Length = 179

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T + +  
Sbjct: 4  GPKLRELRIAKNLTQEELADRAELSKGFISQLERDLTSPSIATLVDILQCLGTTINEFF 62


>gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 6  AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|170722605|ref|YP_001750293.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169760608|gb|ACA73924.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 187

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +D  H   A + + + F  N R +R    ++Q  +  R+G ++  +  +E G+  +++  
Sbjct: 3  KDSAH--RASVLQHVSF--NVRALRNAVGMSQSALAERSGVSRRMLVAIEAGEKNVSLTT 58

Query: 66 MIILAHTLDTPLWKLLK 82
          + ++A  L     +L++
Sbjct: 59 LDLIAEALGVAFSRLIQ 75


>gi|120404243|ref|YP_954072.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119957061|gb|ABM14066.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 104

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 1  MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP R  +++P    A    R    +N R +R    LTQ+ +  ++G  ++ +  +E G+ 
Sbjct: 1  MPTRPSQNDPERVSAWAAHRRTVGDNIRRLRISCGLTQEALALQSGVTRNVLLAVEHGRR 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
           +  + +  +A  L  P  +LL
Sbjct: 61 GLLYERLFDIADALGVPASRLL 82


>gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
 gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99]
          Length = 180

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R++  LT +++  R G  +S++S++E G+ST +I   + +A  LD  + +L 
Sbjct: 5  LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60


>gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI]
 gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar
          anthracis str. CI]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|209518698|ref|ZP_03267515.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209500897|gb|EEA00936.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 200

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                 ER +     R +R+   LT  ++  + G ++  +S++E  +++  +D +  +A
Sbjct: 5  DDSKSPLERYL-GATIRELRQSHGLTIAQVAEQAGISRGMLSKIENAQTSAGLDVLHRIA 63

Query: 71 HTLDTPLWKLLK 82
            L   +  L +
Sbjct: 64 MALGVSMSALFR 75


>gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 134

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R++   +Q E+  R+G  ++ IS +E+GK   +   M  LA  L  P+ +L K
Sbjct: 2  GPKLRQLRRQMGWSQHELARRSGVDRATISAIESGKRDPSGSTMRKLADALGVPVAELYK 61


>gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str.
          Zhang]
 gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei
          str. Zhang]
          Length = 179

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R++R    LTQ+E+  RT   + +IS++E  +S+ +++    +   L        +
Sbjct: 4  GSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGQSPADFFR 63


>gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
 gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RK   L+ KE+ N      S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
 gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar konkukian str. 97-27]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187]
 gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1]
 gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187]
 gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1]
 gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|284044649|ref|YP_003394989.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283948870|gb|ADB51614.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 80

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +++ + RER       R +R    L Q+E+    G  +++++ LE+G++  + D ++ +A
Sbjct: 1  MAEPLHRERRALAIAVRELRARRALKQEEVGEAAGLGRNYLTTLESGRTNPSFDALVRIA 60

Query: 71 HTLDTPLWKLLK 82
            L  PL +L +
Sbjct: 61 SGLGVPLSELTR 72


>gi|220903711|ref|YP_002479023.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868010|gb|ACL48345.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 215

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           IF    R +R EA L+Q+++  + G  +S IS LE  K+  ++ ++++++  L     +L
Sbjct: 140 IFGPLLRTLRVEAGLSQEQLAAQCGMDRSAISLLERQKNQPSLASLVLISEALGMTAAEL 199

Query: 81  L 81
           +
Sbjct: 200 I 200


>gi|126700770|ref|YP_001089667.1| putative phage transcriptional regulator [Clostridium difficile
          630]
 gi|115252207|emb|CAJ70046.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 66

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            N +  R +  L Q+E+ +R G ++ ++S LETGK +  + D MI L+  LDT + +L 
Sbjct: 2  GINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61


>gi|297538615|ref|YP_003674384.1| XRE family transcriptional regulator [Methylotenera sp. 301]
 gi|297257962|gb|ADI29807.1| transcriptional regulator, XRE family [Methylotenera sp. 301]
          Length = 212

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           D           R +     R +R E  LT  ++  R G ++  +S++E   +  +++ 
Sbjct: 8  EDVKVDERNKSLGRHL-GTTIRQLRLEHNLTIADVSERAGISRGMLSKIENSLAATSLET 66

Query: 66 MIILAHTLDTPLWKLLK 82
          +  LA+ L   L KL +
Sbjct: 67 LEQLANALGVTLSKLFQ 83


>gi|295136488|ref|YP_003587164.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
 gi|294984503|gb|ADF54968.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
          Length = 97

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 11 LSDAILRERMIFVNNFRNIRKE-------AKLTQKEIRNRTGFAQSWISELETGKSTINI 63
              ++ E+    +    +RK+         ++Q+E+  RTG A+  I E+E G +    
Sbjct: 16 SDKKLITEKKALGSRIAELRKKVIDPSTNKPISQEELGLRTGNAKKTIGEIERGNTNPTF 75

Query: 64 DNMIILAHTLDTPLWKLL 81
          + +  +A  L  P+ +L 
Sbjct: 76 ETLFKIARELKVPIIELF 93


>gi|126175739|ref|YP_001051888.1| XRE family transcriptional regulator [Shewanella baltica OS155]
 gi|125998944|gb|ABN63019.1| putative transcriptional regulator, XRE family [Shewanella
          baltica OS155]
          Length = 81

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +RK   L+Q E+  R    +S+I  +E  ++ I +D +  +A  LD    +LL
Sbjct: 8  FGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEANITLDMLYKIAEVLDCEPHELL 67


>gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241]
 gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|313499651|gb|ADR61017.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 187

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +D  H +  +         N R++R  A L+Q  +  R+G ++  +  +E G+  +++  
Sbjct: 3  KDSSHRASVLQH----VSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTT 58

Query: 66 MIILAHTLDTPLWKLLK 82
          + ++A  L      L++
Sbjct: 59 LDLIAEALGVAFSTLIQ 75


>gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
 gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
          Length = 189

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R +  LTQ+E+  RT  ++ +IS+LE   S+ +ID    +   L     +  
Sbjct: 13 GKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSIDTFFNILEVLGCTPKEFF 71


>gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 183

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N R +R+E KL+  E+   +G ++S ++++E G+    I  +  L++ +  P   
Sbjct: 6  LIVAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKVPFDA 65

Query: 80 L-LKP 83
          L ++P
Sbjct: 66 LTVRP 70


>gi|254385813|ref|ZP_05001133.1| transcriptional regulatory protein [Streptomyces sp. Mg1]
 gi|194344678|gb|EDX25644.1| transcriptional regulatory protein [Streptomyces sp. Mg1]
          Length = 192

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N ++ R    LT   +  R G ++  + ++E  ++  +++ M+ LA  L   +  
Sbjct: 8  QSLARNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTNPSLETMVKLADALGVDMTA 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|42527946|ref|NP_973044.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41818991|gb|AAS12963.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|325474830|gb|EGC78016.1| DNA-binding protein [Treponema denticola F0402]
          Length = 101

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF++N R IRKE  +TQ+++        ++I ++ET K   +I+ +  +A  L     
Sbjct: 4  QEIFISNLRRIRKEKHITQEKLAELCNTDTAYIGQIETHKRFPSINFIEKIASALQIEAT 63

Query: 79 KLLK 82
          +L K
Sbjct: 64 ELFK 67


>gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1]
          Length = 119

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +ER++      +  RKE  ++Q E+  R   +  ++S++E GKS   +  +I ++  L  
Sbjct: 5  KERLVPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQI 64

Query: 76 PLWKLLKP 83
             KLL+P
Sbjct: 65 STDKLLRP 72


>gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 6  AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC
          3502]
 gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 6  AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|1171067|sp|P43640|MUNC_MYCSP RecName: Full=Regulatory protein munI
 gi|431929|emb|CAA53787.1| MunI regulatory protein [Mycoplasma sp.]
          Length = 74

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ F N  + +RKE   L+Q+    +    +++ S +E GK  +++ N+  ++  L   L
Sbjct: 5  KIRFGNKLKKLRKEKTDLSQESFAAQIDLDRTYYSSIENGKRNVSLVNLEKISAGLGITL 64

Query: 78 WKLL 81
           +L 
Sbjct: 65 SELF 68


>gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 106

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 35/66 (53%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            + +     + +RK  K+TQ+++  + G    ++S +E G+S+ +++ +  ++  LD  
Sbjct: 3  TTKELLGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRSSPSLEALENISQALDVE 62

Query: 77 LWKLLK 82
          +  L +
Sbjct: 63 IKDLFE 68


>gi|119896658|ref|YP_931871.1| SgrAlc control protein [Azoarcus sp. BH72]
 gi|119669071|emb|CAL92984.1| SgrAlc control protein [Azoarcus sp. BH72]
          Length = 77

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+    +Q+ +  R    +S++ E+E G    ++   + LA  LD PL  LL
Sbjct: 10 FGAAVRQFRERHGWSQELLAERADLNRSYLGEVERGTVVPSLATAVKLAAALDIPLSNLL 69


>gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135]
 gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135]
          Length = 96

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + L   L T      K
Sbjct: 4  GYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASDFFK 63


>gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM
          17241]
 gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM
          17241]
          Length = 136

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R+    TQ+E+  R   + S+IS++E GK    I  +  +A  L      L
Sbjct: 14 MLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKENPTITVLERIAKALAIDPCML 73

Query: 81 L 81
          L
Sbjct: 74 L 74


>gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862]
          Length = 137

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F     N+RK+  L+Q+++ ++    +  +S+ ETG+S+ +++ M  +A  LD  +  L
Sbjct: 4  VFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSVQVL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|268317796|ref|YP_003291515.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM
          4252]
 gi|262335330|gb|ACY49127.1| transcriptional regulator, XRE family [Rhodothermus marinus DSM
          4252]
          Length = 505

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     + +R++  LT +++ +R G + S++SE+E GK     D +I LA        
Sbjct: 9  RFVLGLKLKALRQQRGLTLQDVASRAGLSVSYLSEIEKGKKFPKPDKLIDLASVFSVSYE 68

Query: 79 KLLKP 83
          +L+ P
Sbjct: 69 ELISP 73


>gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
 gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|169825512|ref|YP_001695687.1| hypothetical protein Bsph_p098 [Lysinibacillus sphaericus C3-41]
 gi|168994789|gb|ACA42328.1| conserved hypothetical protein with Helix-turn-helix motif
          [Lysinibacillus sphaericus C3-41]
          Length = 75

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK+A L+Q+++  +    +++I  LE  +   +I  +  +   L+    + +
Sbjct: 8  FGKVLKIYRKDAGLSQEQLALQCDLDRTYIGLLERAERQPSITTIFKICTALNVKPHEFI 67

Query: 82 K 82
          K
Sbjct: 68 K 68


>gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7]
 gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7]
          Length = 180

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +N+R +  LTQ+E+  RT  ++ +IS++E   S  +++    +   L        
Sbjct: 4  GNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKDFF 62


>gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 216

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+RD P      L        N R +R++  LT  E+  R G +++ +S++E  +++ ++
Sbjct: 16 RERD-PQAPVEELEFEAAIGRNVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSL 74

Query: 64 DNMIILAHTLDTPLWKLLK 82
            + +LA  LD P+  L +
Sbjct: 75 STLALLAKGLDVPVTSLFR 93


>gi|27375166|ref|NP_766695.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348302|dbj|BAC45320.1| bsr0055 [Bradyrhizobium japonicum USDA 110]
          Length = 83

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R IR   K+TQ+E+ +  G +  ++  +E    + ++  +  +A  L     
Sbjct: 10 KEVMAVNLRRIRHVKKMTQEELADGAGLSVRYVGAIERADVSASVTVLGRIAEALGVEAT 69

Query: 79 KLLK 82
           L+K
Sbjct: 70 DLVK 73


>gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 186

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N  R +RKE  LT  ++ + TG + + +S++E G +  +   +  LAH LD P
Sbjct: 4  VGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIP 58


>gi|113971535|ref|YP_735328.1| XRE family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886219|gb|ABI40271.1| transcriptional regulator, XRE family [Shewanella sp. MR-4]
          Length = 78

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R EA L+Q+++  ++G  +++IS +E     I +D++  L   L     + ++
Sbjct: 11 LRQLRNEAGLSQEQLARQSGIDRTYISGVERSIRNITLDSLEGLIGALGVTSEEFIR 67


>gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 209

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  +    R R       R +R+E  LT  E+  R   A S +S++E G+ +   D ++ 
Sbjct: 7  PLDAPPRPRSRRSIAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILS 66

Query: 69 LAHTLDTPLWKLL 81
          LA  L   + +L 
Sbjct: 67 LAEGLGADVAELF 79


>gi|28211495|ref|NP_782439.1| putative transcriptional regulator sinR [Clostridium tetani E88]
 gi|28203936|gb|AAO36376.1| putative transcriptional regulator sinR [Clostridium tetani E88]
          Length = 171

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
           +F  N + IR++  L   E+   +G   S+IS LE G K    I  +  LA+ L+  + 
Sbjct: 27 KMFDANIKRIREQKGLGVNELSRISGVNASYISALERGEKQNPTITILKKLANALEVTID 86

Query: 79 KLLK 82
          +L+K
Sbjct: 87 ELMK 90


>gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 211

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 183

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 34/54 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R +R + +LT K++  ++GF+ S++S++E G S++ I ++  +A  L  P+
Sbjct: 6  KKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPI 59


>gi|160899644|ref|YP_001565226.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365228|gb|ABX36841.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 106

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 2  PRRKRDEP-HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          P R    P + S+  L     F    R  R    + Q +   + G ++S + ++E G+  
Sbjct: 13 PGRPPGTPTYESEPALA----FGRAVRAARVAQGVAQDDFAFQAGISRSHMGKIERGEHV 68

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            +  ++ +A  L     +L+
Sbjct: 69 PTLPLILKIATALGISASELM 89


>gi|27733909|ref|NP_775700.1| putative regulatory protein [Leuconostoc citreum]
 gi|27552373|emb|CAD38159.1| putative regulatory protein [Leuconostoc citreum]
          Length = 68

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R++  ++Q++     G  +S+ + +E+GK  I+I N+  +   L   L +  K
Sbjct: 7  AHRIRQLRQQQNVSQEKFAYNIGMDRSYFASVESGKRNISIINLQKIVTGLGVTLEEFFK 66


>gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 181

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 6  AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae
          ATCC 10712]
          Length = 189

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E +      R+ RK+  ++   +  R+G +Q ++S+LE G +T ++ ++  +A  LD  
Sbjct: 8  PEAIEVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALDVT 67

Query: 77 LWKLLKP 83
              L+P
Sbjct: 68 PGTFLRP 74


>gi|317480761|ref|ZP_07939847.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
 gi|316903102|gb|EFV24970.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
          Length = 161

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + IL+ER    +    +RK+  +TQ+E+ N  G  +  I+++E G   ++ID +  +   
Sbjct: 10 EKILKERERIGSRLAILRKKRNMTQEELANLCGVNRVNIAKIEKGAYNVSIDILSKVTSA 69

Query: 73 LD 74
          L 
Sbjct: 70 LG 71


>gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC
          367]
 gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC
          367]
          Length = 120

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R++A L+Q+++ ++    +  +S+ E G++T ++D +I LA  L   L +L+
Sbjct: 5  FNTQLSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETTPDLDTLISLATVLGVSLDELV 64


>gi|113867108|ref|YP_725597.1| hypothetical protein H16_A1088 [Ralstonia eutropha H16]
 gi|113525884|emb|CAJ92229.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 146

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  +   +RK+   +Q+ +   +G ++S++S +E+GK  + + N+  LA TL  P  ++
Sbjct: 8  LFGLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEM 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|332982997|ref|YP_004464438.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332700675|gb|AEE97616.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 71

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R   K+ Q E+    G + S++S++E G++  ++  +  LA  LD  +   
Sbjct: 1  MLGTKIKKLRINKKIKQIELAKAAGISNSFLSDIENGRTMPSLKTLYKLADALDVSITVF 60

Query: 81 LK 82
          L+
Sbjct: 61 LE 62


>gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45]
 gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45]
          Length = 212

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK  ++T  E+  +TG +   +S++E G  + +++ +  LA+ L  PL +L 
Sbjct: 29 GRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPLVQLF 87


>gi|238925877|ref|YP_002939395.1| hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656]
 gi|238877554|gb|ACR77261.1| Hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656]
          Length = 105

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 ++ R+   LTQ+E+      + + +S +E G     +D  + +A+ LD     
Sbjct: 4  KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|225621497|ref|YP_002722756.1| MerR family transcriptional regulator [Brachyspira hyodysenteriae
          WA1]
 gi|225216318|gb|ACN85052.1| transcriptional regulator, MerR family [Brachyspira
          hyodysenteriae WA1]
          Length = 124

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +RK  K+T  E+  ++  +  ++  +E G   I+I N+  +   L+T    LL
Sbjct: 15 LGQNIRELRKNKKMTIDELAEKSSLSGKYLQGVEVGNRNISIKNLNKICKALETSPDTLL 74


>gi|299133034|ref|ZP_07026229.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593171|gb|EFI53371.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 84

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R    +TQ+E+  R G +  ++  +E    + ++  +  +A  LD    
Sbjct: 4  KEVMAVNLRRLRHAKGMTQEELAERAGLSARYVGGIERADVSASVTVLGRIAEALDVEAT 63

Query: 79 KLLK 82
          +L++
Sbjct: 64 ELVR 67


>gi|290954828|ref|YP_003486010.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260644354|emb|CBG67439.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 204

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R++  L+   +    G A+  +S LE G     +D +  +A  L  P+ +L
Sbjct: 8  VVARNVRLLREQRGLSLARLAREAGLAKQTLSNLEQGTGNPTVDTLFSIATALGVPVTRL 67

Query: 81 L 81
          +
Sbjct: 68 V 68


>gi|156977428|ref|YP_001448334.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116]
 gi|156529022|gb|ABU74107.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116]
          Length = 68

 Score = 59.6 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F NN R +RK   ++Q ++       +S+I  +E G+  I ++    LA  L   +  
Sbjct: 6  KAFGNNLRLMRKSKSISQDKLALLADIDRSYIGRIERGEVNITLEKAYQLARVLGCDVID 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 117

 Score = 59.6 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R +  LTQ+++  R   + ++I ++E G+ +++++ ++ LA+ L   +  
Sbjct: 4  EALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGERSLSLETLVKLANQLGVTVDY 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU121]
          Length = 179

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+RK   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T      K
Sbjct: 4  GYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASDFFK 63


>gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter
          oceani DSM 16646]
 gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter
          oceani DSM 16646]
          Length = 181

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +RK+  LT KE+   TG + S++S++E G S++ I ++  +A  L+ P+ +  
Sbjct: 6  AEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEFF 64


>gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri
          L37603]
 gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri
          L37603]
          Length = 179

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+RK   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T      K
Sbjct: 4  GYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASDFFK 63


>gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 399

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  RK+  L+Q+ +  + G ++  + + E   +  ++DN+  LA  LD  +  
Sbjct: 1  MTLGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTALPSLDNLQALAAALDVSVDG 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|167647773|ref|YP_001685436.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350203|gb|ABZ72938.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 78

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R   ++TQ+E+ +  G +  +I  +E    + ++  +  +A  L     
Sbjct: 4  KEVMAINLRRLRHAKQMTQEELADHAGLSARYIGAIERADKSASVTVLGKIAEALGVDPA 63

Query: 79 KLL 81
           L+
Sbjct: 64 DLI 66


>gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 219

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+RD     D    E  I   N R +R++  LT  E+  R G +++ +S++E  +++ ++
Sbjct: 19 RERDPQEPVDDTEFEAAI-GRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSL 77

Query: 64 DNMIILAHTLDTPLWKLLK 82
            + +LA   D P+  L +
Sbjct: 78 STLALLAKGFDVPVTTLFR 96


>gi|294827617|ref|NP_710496.2| transcriptional regulator [Leptospira interrogans serovar Lai str.
           56601]
 gi|293385461|gb|AAN47514.2| transcriptional regulator with HTH domain [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 114

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                E   F N     R EA LTQ ++    G  QS+IS++E+G+  + +++ + L   
Sbjct: 41  KISEEEWESFFNRLTTARIEANLTQAQVAKSLGKYQSYISKIESGEKKLFMEDFVRLYKL 100

Query: 73  LDTPL 77
            +   
Sbjct: 101 YNKSP 105


>gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41]
 gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 180

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R +  LTQ+E+  RT  ++ +IS+LE   ++ +I+ +  +   L +   +
Sbjct: 1  MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|153954630|ref|YP_001395395.1| hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555]
 gi|146347488|gb|EDK34024.1| Hypothetical protein CKL_2012 [Clostridium kluyveri DSM 555]
          Length = 71

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79
          +  +N + IR+   +T+  +  ++G +QS+I E+E+GK +  +ID ++ LA  L+  + +
Sbjct: 1  MLSDNLKKIREIKGITKYRLSKKSGISQSYICEIESGKYTNPSIDIVLKLAEALEISISE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426]
 gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 180

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 36/59 (61%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R+IRK+  LT KE+  +TG + S++S++E G +++ I ++  +A  L+ P+    +
Sbjct: 6  RKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPITDFFE 64


>gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri
          serovar 1/2b str. SLCC3954]
 gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri
          serovar 1/2b str. SLCC3954]
 gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171]
          Length = 180

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|126652113|ref|ZP_01724295.1| DNA-binding protein [Bacillus sp. B14905]
 gi|126591021|gb|EAZ85132.1| DNA-binding protein [Bacillus sp. B14905]
          Length = 184

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF  N + IR+  KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLIFARNLKAIREREKLSLEKVSQLSGVSKAMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
          +L+
Sbjct: 65 ELI 67


>gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi
          DSM 13479]
 gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi
          DSM 13479]
          Length = 177

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T + +  
Sbjct: 4  GAKLKELRILKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTSIGEFF 62


>gi|284036935|ref|YP_003386865.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816228|gb|ADB38066.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 500

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F    R +R +  L+  E+  +   + S+++E+E G+     D +  LA+ +     
Sbjct: 9  RLLFGLKLRQLRLDKGLSVSELAQKASLSVSYVTEIEKGRKYPKADKISALANAMQVDYD 68

Query: 79 KLL 81
           L+
Sbjct: 69 TLV 71


>gi|85712371|ref|ZP_01043421.1| Transcriptional Regulator, XRE family protein [Idiomarina baltica
          OS145]
 gi|85693814|gb|EAQ31762.1| Transcriptional Regulator, XRE family protein [Idiomarina baltica
          OS145]
          Length = 75

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    +  R E  L+Q+++ N  G A+S+IS++E G +  ++ ++  +A TL     
Sbjct: 4  KAAFGKAVKLRRVEIDLSQEDMANSAGMARSFISKVERGDANPSVTSVKKIADTLGVLPS 63

Query: 79 KL 80
           L
Sbjct: 64 DL 65


>gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM
          15053]
 gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM
          15053]
          Length = 194

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ L   L T + +  
Sbjct: 19 GKKLKELRIAKDLTQEELADRAELSKGFISQLERDLTSPSIATLVDLLQVLGTTINEFF 77


>gi|15964249|ref|NP_384602.1| putative transcription regulator protein [Sinorhizobium meliloti
          1021]
 gi|15073425|emb|CAC41933.1| Putative HTH-type transcriptional regulator [Sinorhizobium
          meliloti 1021]
          Length = 89

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R I   N R +R E  L+Q+ +       ++++  +E G   + I  +  LA  L+ P+
Sbjct: 3  ARQIMGWNLRLLRVERGLSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPV 62

Query: 78 WKLL 81
            L 
Sbjct: 63 AALF 66


>gi|325663237|ref|ZP_08151687.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470691|gb|EGC73921.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 120

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +        +  R +  +TQ+ + +      + +S +ETGK+ +++  +I +A+ L  
Sbjct: 2  EVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSV 61

Query: 76 PLWKLL 81
           +  LL
Sbjct: 62 SVDTLL 67


>gi|320333173|ref|YP_004169884.1| helix-turn-helix domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319754462|gb|ADV66219.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM
          21211]
          Length = 129

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E  L  K++    G +  ++S+LE G++  ++D +  LA      +  LL+
Sbjct: 5  ERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLDTLQTLAGAYTITVHDLLE 63


>gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198]
 gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198]
          Length = 161

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S    +      N  + +R+   L+  E+  ++G +++ +S+LE+G S   ID +  +A 
Sbjct: 3  SQPPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIAI 62

Query: 72 TLDTPLWKLL 81
           L  PL  L 
Sbjct: 63 ALGFPLGDLF 72


>gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC
          15579]
 gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC
          15579]
          Length = 181

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +A  L+ P+    K
Sbjct: 6  AEKIRNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYFFK 65


>gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016]
 gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 83

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N RNIR +  +TQ+E+   TG  QS IS  E G     I  +  ++  L+ P+ KLL
Sbjct: 6  VGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLL 65

Query: 82 K 82
          +
Sbjct: 66 E 66


>gi|218133855|ref|ZP_03462659.1| hypothetical protein BACPEC_01744 [Bacteroides pectinophilus ATCC
          43243]
 gi|319936993|ref|ZP_08011403.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|217991230|gb|EEC57236.1| hypothetical protein BACPEC_01744 [Bacteroides pectinophilus ATCC
          43243]
 gi|319807929|gb|EFW04508.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 111

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N R  R   KL Q+++  +T    ++I  +E G+   +++  I + + L   
Sbjct: 7  GKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVS 60


>gi|163858549|ref|YP_001632847.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262277|emb|CAP44580.1| predicted transcriptional regulator [Bordetella petrii]
          Length = 101

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 2  PRRKRDEP-HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          P R    P + S+  L     F    R  R    + Q +   + G ++S + ++E G+  
Sbjct: 8  PGRPPGTPTYESEPALA----FGRAVRAARVAQGVAQDDFAFQAGISRSHMGKIERGEHV 63

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            +  ++ +A  L     +L+
Sbjct: 64 PTLPLILKIATALGISASELM 84


>gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA]
 gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R    N  R +RK  KL+Q+++       +S+++++E GK   +++ +  ++  L 
Sbjct: 2  SQETRTFVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIEGGKRNPSLECIEKISKGLG 61

Query: 75 TPLWKLLK 82
            L +  K
Sbjct: 62 LSLEEFFK 69


>gi|27375149|ref|NP_766678.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27348285|dbj|BAC45303.1| bsr0038 [Bradyrhizobium japonicum USDA 110]
          Length = 93

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R IR    ++Q+++  + G  +S++S LE       ID +  +A TLD  L 
Sbjct: 4  RAIVAWNVRRIRVNRGISQEQLAWKAGIDRSYMSSLERQSKNPTIDLLDRIAETLDVQLS 63

Query: 79 KLL 81
          +  
Sbjct: 64 EFF 66


>gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 213

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +  R E K TQ+++    G ++  IS  E GKS  +I ++I ++      L  LLK
Sbjct: 6  GSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKSYPDIISVIKMSECYGVSLDYLLK 65


>gi|225388243|ref|ZP_03757967.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme
          DSM 15981]
 gi|225045711|gb|EEG55957.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme
          DSM 15981]
          Length = 116

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R +A LTQ+ +  +   + + +S +ETG S +++  ++ LA+ L   + + L
Sbjct: 9  GKRIKIARIKADLTQEALAEKASLSTTHMSNIETGNSKLSLPTIVSLANALSVSVDEFL 67


>gi|148548716|ref|YP_001268818.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512774|gb|ABQ79634.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 187

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +D  H +  +         N R++R  A L+Q  +  R+G ++  +  +E G+  +++  
Sbjct: 3  KDSSHRASVLQH----VSLNVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTT 58

Query: 66 MIILAHTLDTPLWKLLK 82
          + ++A  L      L++
Sbjct: 59 LDLIAEALGVAFSTLIQ 75


>gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus
          polymyxa SC2]
 gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein
          [Paenibacillus polymyxa SC2]
          Length = 114

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R IR    LTQ+++ +       +I  LE G+   +ID +  +   L+  + 
Sbjct: 5  RKQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGERNFSIDTLEKVLTALNVSIS 64

Query: 79 KLL 81
          +L+
Sbjct: 65 ELM 67


>gi|116691614|ref|YP_837147.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|170736384|ref|YP_001777644.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|206562401|ref|YP_002233164.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|116649614|gb|ABK10254.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
 gi|169818572|gb|ACA93154.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
 gi|198038441|emb|CAR54399.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 73

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G++  +I     +A   D  +  LL
Sbjct: 8  FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 67


>gi|255601036|ref|XP_002537591.1| conserved hypothetical protein [Ricinus communis]
 gi|223515814|gb|EEF24793.1| conserved hypothetical protein [Ricinus communis]
          Length = 109

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R  A+ +Q+ +    G  + +IS +E G +  +++ +  + ++L   L +L 
Sbjct: 20 LGKRLKECRHAAEKSQETLAFEAGVDRVYISSIERGLANPSVETLATICYSLGVTLGELF 79

Query: 82 KP 83
           P
Sbjct: 80 TP 81


>gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 209

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 9  PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          PH   +  RE+++        R  RK+  +T  E+   TG +   +S++E G ++ ++  
Sbjct: 9  PHSVRSGDREKVLEVAIGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENGNTSPSLTT 68

Query: 66 MIILAHTLDTPLWKLLK 82
          +  LA  L  PL    +
Sbjct: 69 LQSLADALSVPLTSFFR 85


>gi|150388588|ref|YP_001318637.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149948450|gb|ABR46978.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 122

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  N  R  R    LT +E+      + S++  +E G+  ++I+ +  L+ TL+     
Sbjct: 6  KLIGNKIRKERILLDLTLEELAEILDLSPSYMGLIERGQRGVSIETLYKLSTTLNVTTDY 65

Query: 80 LLKP 83
          LL P
Sbjct: 66 LLSP 69


>gi|209544911|ref|YP_002277140.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209532588|gb|ACI52525.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 76

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R++  L+Q+E+ ++    ++++S LE     ++ID +  +A  L     
Sbjct: 4  REVLARNLRIYRQQRGLSQEELAHKAEIDRTYVSALERCVYGVSIDVLDRIAVALSVEAT 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 DLLQ 67


>gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
 gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
          Length = 181

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT K++ N      S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 188

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                      + R  R+ A L+  E+  R G A+S +S+LE+G    +++ +  LA  
Sbjct: 5  RPTAPLLAQIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWALAVA 64

Query: 73 LDTPLWKLLKP 83
          L  P  +L+ P
Sbjct: 65 LGVPFSRLVDP 75


>gi|299535208|ref|ZP_07048532.1| MerR family transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
 gi|298729329|gb|EFI69880.1| MerR family transcriptional regulator [Lysinibacillus fusiformis
          ZC1]
          Length = 129

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG---FAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +     R IR    L+Q+E+  RTG   F++  +S +E G+S I +  +  +   LD  
Sbjct: 6  KLVGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLETIMKALDIT 65

Query: 77 LWKLL 81
            +L 
Sbjct: 66 PEELF 70


>gi|298490745|ref|YP_003720922.1| XRE family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298232663|gb|ADI63799.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708]
          Length = 66

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          F  N R +RK   L+Q+++    G  +++I  +E G++
Sbjct: 10 FGKNVRKVRKAKGLSQEQLAELAGLYRNYIGGVERGEN 47


>gi|170692929|ref|ZP_02884090.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
 gi|170141927|gb|EDT10094.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
          Length = 217

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          ++ +   H +   L +  +   + R  RK   LT  E+  R+G A S IS+ E G   + 
Sbjct: 9  KQPKAHAHEAPPSL-DHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALT 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
           D    LAH+L+     + 
Sbjct: 68 YDKFAALAHSLELEFDAIF 86


>gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC
          27755]
 gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC
          27755]
          Length = 179

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R    LTQ+E+ +R+  ++ +IS+LE   ++ +I  ++ +   L T + +  +
Sbjct: 4  GKKIKELRVAKGLTQEELADRSELSKGFISQLERDLTSPSIATLMDILQCLGTTVSEFFQ 63


>gi|159028411|emb|CAO89853.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 81

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+  L+Q+ +  R    +++IS +E G   I +D++  +   LD  +   +
Sbjct: 9  VAVTVRKLRKKRNLSQEALGYRANLDRTYISGVERGVRNITLDSLEQIISALDMDIVTFV 68


>gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596]
 gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596]
          Length = 180

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|299133035|ref|ZP_07026230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593172|gb|EFI53372.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 70

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R +R    ++Q+E+ +R G  ++++  LE  + +  +D +  LA  L+    
Sbjct: 4  REIVATNLRRLRHAKSMSQEELADRAGTNRNYVGMLEREQHSATVDMLEKLAEVLEADPV 63

Query: 79 KLLK 82
          +  +
Sbjct: 64 EFFR 67


>gi|228997018|ref|ZP_04156650.1| Transcriptional regulator, XRE [Bacillus mycoides Rock3-17]
 gi|228762759|gb|EEM11674.1| Transcriptional regulator, XRE [Bacillus mycoides Rock3-17]
          Length = 77

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF    +  R  + ++Q+E+   +   +++I  LE GK    I  +  LA  L+ P  +
Sbjct: 5  QIFGAILQTHRLNSNMSQEELAFNSELDRTYIILLERGKRKPTIITLFSLATALNVPPSQ 64

Query: 80 LLK 82
          L+K
Sbjct: 65 LIK 67


>gi|254976734|ref|ZP_05273206.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255094118|ref|ZP_05323596.1| putative phage transcriptional regulator [Clostridium difficile
          CIP 107932]
 gi|255315869|ref|ZP_05357452.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255518530|ref|ZP_05386206.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255651649|ref|ZP_05398551.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260684686|ref|YP_003215971.1| putative phage transcriptional regulator [Clostridium difficile
          CD196]
 gi|260688344|ref|YP_003219478.1| putative phage transcriptional regulator [Clostridium difficile
          R20291]
 gi|306521450|ref|ZP_07407797.1| putative phage transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|260210849|emb|CBA65944.1| putative phage transcriptional regulator [Clostridium difficile
          CD196]
 gi|260214361|emb|CBE06742.1| putative phage transcriptional regulator [Clostridium difficile
          R20291]
          Length = 66

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            N +  R +  L Q+E+ +R G ++ ++S LETGK +  + D MI L+  LDT + +L 
Sbjct: 2  GINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELF 61


>gi|239817497|ref|YP_002946407.1| helix-turn-helix domain protein [Variovorax paradoxus S110]
 gi|239804074|gb|ACS21141.1| helix-turn-helix domain protein [Variovorax paradoxus S110]
          Length = 80

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           R+      A    R +   N    R     +Q+ +    G  +++++ +E     I++D
Sbjct: 4  PRNSSKQPQAS--AREVLALNLIRQRGAKGWSQEALAFEAGLHRTFVAHVERQARNISLD 61

Query: 65 NMIILAHTLDTPLWKLLK 82
          N+  LA  L+   ++LL+
Sbjct: 62 NLERLALALNLRPYQLLE 79


>gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
          2379]
 gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM
          2379]
          Length = 107

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +     R +RK A +TQ+++    G  Q  +S +E GKS  ++D ++ +A  ++ P
Sbjct: 3  TANELLGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAP 62

Query: 77 LWKLLK 82
          L  L +
Sbjct: 63 LPNLFE 68


>gi|78059660|ref|YP_366235.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77964210|gb|ABB05591.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 113

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R +R    L+Q+++       +++IS++E  +  +++DN+  +A  L    +
Sbjct: 35 RDVLAFNVRVVRVRNMLSQEQLGFAADLDRTFISQVERARINVSLDNIERIARALGVAAY 94

Query: 79 KLLK 82
           LL+
Sbjct: 95 ILLQ 98


>gi|317472207|ref|ZP_07931536.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp.
          3_2_56FAA]
 gi|331088310|ref|ZP_08337229.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|316900296|gb|EFV22281.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp.
          3_2_56FAA]
 gi|330408554|gb|EGG88020.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 120

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +        +  R +  +TQ+ + +      + +S +ETGK+ +++  +I +A+ L  
Sbjct: 2  EVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSV 61

Query: 76 PLWKLL 81
           +  LL
Sbjct: 62 SVDTLL 67


>gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family
          [Staphylococcus hominis subsp. hominis C80]
 gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family
          [Staphylococcus hominis subsp. hominis C80]
          Length = 87

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 15 ILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           L+E  +F  NN +  RKE K++Q+E+ +R    +  +S +E GK    I+  I +A  L
Sbjct: 12 SLKEAFLFMNNNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKAL 71

Query: 74 DTPLWKLL 81
          D  L KL 
Sbjct: 72 DVDLNKLF 79


>gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 68

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDT 75
          MI     R +RK   L+Q+E     G +QS+ISELE G K+  ++  +  ++  L  
Sbjct: 1  MIPGRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKTNPSLSVIKKISKALKV 57


>gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J]
 gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J]
          Length = 135

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +R+   L+Q+ +  +   ++  IS+ E G +T +++N++ LA      L +L+
Sbjct: 4  FSSQLKILRQAKNLSQEALAEQLFISRQAISKWENGDATPDLENLVKLAEIFKVSLDELV 63


>gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 205

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E  LTQ+++  +   +++ +S+ ETG  + N+D++ ++A   D  +  LL
Sbjct: 3  FGEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGGGSPNLDSLQVVARLFDVSVDDLL 62


>gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 179

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R E +LTQ+E+ NR   ++ +IS++E   ++ +I  +I +   L T L +  
Sbjct: 4  GEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLTEFF 62


>gi|167582978|ref|ZP_02375852.1| possible transcriptional regulator, XRE family protein
          [Burkholderia thailandensis TXDOH]
          Length = 115

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R          I           +  R EA  +Q+ +       +++IS +E G +  +
Sbjct: 10 KRPTSSAARPAPISIA---LGKRIKQCRHEADKSQETLAFEAHVDRTYISAIERGIANPS 66

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          ++ +  + ++L+  L +L  P
Sbjct: 67 VETLANICYSLNVTLAELFAP 87


>gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
          Length = 185

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      + +R E  LTQ ++ +R   ++ +IS++E   ++ +I  ++ +   L T L
Sbjct: 5  ELMNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLTSPSIATLVDILECLGTNL 64

Query: 78 WKLL 81
              
Sbjct: 65 KDFF 68


>gi|77459530|ref|YP_349037.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77383533|gb|ABA75046.1| putative XRE-family transcriptional regulator [Pseudomonas
          fluorescens Pf0-1]
          Length = 187

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R  A ++Q  +  ++G ++  +  +E G+  +++  +  +A  L+     L+
Sbjct: 15 VSQNVRRLRHAADMSQTALAEKSGVSRRMLVAIEAGEKNVSLTTLDRVAEALEVAFSDLI 74

Query: 82 K 82
          +
Sbjct: 75 Q 75


>gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM
          10411]
 gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM
          10411]
          Length = 180

 Score = 59.2 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              ++ RK+  LT K +  + G   ++IS++ETGK+  +I  +  +A +LD  +  LL
Sbjct: 4  AEKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRDLL 62


>gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis
          VCU144]
          Length = 175

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +N + IRKE K+TQ E+ +    +QS++S+LE  +  + I  +  +A  L+  +  L
Sbjct: 4  GDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAYL 61


>gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia
          rustigianii DSM 4541]
 gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia
          rustigianii DSM 4541]
          Length = 185

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+   L+  E+   +G +++ +S+LE+G S   ID +  +A  L  PL  L  
Sbjct: 10 GQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAALRFPLSDLFT 69


>gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 179

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 36/59 (61%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R++RK+  LT KE+  +TG + S++S++E G +++ I ++  +A  L+ P+    +
Sbjct: 6  KKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPITDFFE 64


>gi|255036397|ref|YP_003087018.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254949153|gb|ACT93853.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 496

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++F    + +R +  ++  E+  ++G + S+I+E+E GK     D ++ LA  ++    
Sbjct: 9  RLVFGLKLKQLRLDKGMSLSELSQKSGLSISYINEIEKGKKYPKSDKILALASAIEVDYD 68

Query: 79 KLL 81
           L+
Sbjct: 69 TLV 71


>gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
          Length = 148

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R +  L+Q +I  RTG  + ++S +E G +  ++D +  +A  LD PL +  
Sbjct: 37 GMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDLPLAQFF 95


>gi|312881391|ref|ZP_07741188.1| transcriptional regulator, Cro/CI family protein [Vibrio
          caribbenthicus ATCC BAA-2122]
 gi|309371031|gb|EFP98486.1| transcriptional regulator, Cro/CI family protein [Vibrio
          caribbenthicus ATCC BAA-2122]
          Length = 176

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I   N ++IR    L+  ++ +  G A+S +S +E G     +D +  LA  LD P
Sbjct: 8  ILGRNLQSIRVSKGLSLSQLAHDAGIAKSNLSRIEQGSGNPTLDTLWRLAIQLDVP 63


>gi|104782559|ref|YP_609057.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila
          L48]
 gi|95111546|emb|CAK16266.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          entomophila L48]
          Length = 177

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R +A L+Q  +  R+G ++  +  +E G+  +++  + ++A  L      L+
Sbjct: 5  VSQNVRRLRSDAGLSQAALSERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLI 64

Query: 82 K 82
          +
Sbjct: 65 Q 65


>gi|307132763|ref|YP_003884779.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937]
 gi|306530292|gb|ADN00223.1| hypothetical protein Dda3937_02160 [Dickeya dadantii 3937]
          Length = 156

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 11  LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           L+ A +  R        + RK   LTQK++  +TG  ++ +SE+E G+ T ++D      
Sbjct: 67  LAAASMASRESMGKTIASTRKACGLTQKQVAEQTGINKTTLSEIENGRFTGSLDIFERYL 126

Query: 71  HTLDTPL 77
             +   L
Sbjct: 127 DAVGLQL 133


>gi|284041578|ref|YP_003391918.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283945799|gb|ADB48543.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 93

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 33/68 (48%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  E ++     R +R    L+Q+++   +G  ++++  +E G+       ++ L   L
Sbjct: 10 PVSAEHVVLGRAVRELRARRDLSQEQLGFHSGLHRNYVGAIERGEINPTFKTLLSLVRGL 69

Query: 74 DTPLWKLL 81
          D PL +L+
Sbjct: 70 DLPLSELV 77


>gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
 gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
          Length = 181

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|154504923|ref|ZP_02041661.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC
          29149]
 gi|153794806|gb|EDN77226.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC
          29149]
          Length = 120

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +        +  R +  +TQ+ + +      + +S +ETGK+ +++  +I +A+ L  
Sbjct: 2  EVDYKAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSV 61

Query: 76 PLWKLL 81
           +  LL
Sbjct: 62 SVDTLL 67


>gi|148257956|ref|YP_001242541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410129|gb|ABQ38635.1| Putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 58

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +TQ+++   +GF+Q +IS LE G+    +  +  L+  LD    +LLKP
Sbjct: 1  MTQEQLAEISGFSQQYISGLEKGQRNPTVVTIYELSVALDVDYLELLKP 49


>gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
 gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
          Length = 181

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus
          TCF52B]
 gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus
          TCF52B]
          Length = 177

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               + +R     TQ+E+ +R   ++S+IS+LE  + + +ID +  +   L + L
Sbjct: 3  LGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDL 58


>gi|184200390|ref|YP_001854597.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201]
 gi|183580620|dbj|BAG29091.1| putative Xre family DNA-binding protein [Kocuria rhizophila
          DC2201]
          Length = 71

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+      R +R    LTQ+ +  R G    + + +E G+  + +D++  LA  L     
Sbjct: 6  RITLGTQVRKVRLSRGLTQEVLAERLGVTPRYFAGIERGERNLTLDSVDALAEQLGVEAQ 65

Query: 79 KLL 81
           LL
Sbjct: 66 SLL 68


>gi|317131575|ref|YP_004090889.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315469554|gb|ADU26158.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 183

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + IRK  KL+   +   TG ++S + ++E G++   I  +  +   L      L+ P
Sbjct: 11 NLKKIRKAKKLSLDALATETGISKSMLGQIERGEANPTIATLGKIVSGLRVEFMDLVGP 69


>gi|150377153|ref|YP_001313749.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150377520|ref|YP_001314115.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150031700|gb|ABR63816.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
 gi|150032067|gb|ABR64182.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 72

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R  R + +L+Q+E+  R    +++I  LE  +    I+ +  LA  LD  + 
Sbjct: 4  RETVARNLRIARNDRQLSQEELGLRANVHRTYIGMLEREEYNPTIEMLEKLAAALDLKVV 63

Query: 79 KLLK 82
             K
Sbjct: 64 DFFK 67


>gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4]
 gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4]
          Length = 178

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R    LT +++ ++ G +   IS++E G +  +++ M  +A  LD PL+ L +
Sbjct: 5  RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTDPSLETMRRIAEVLDIPLFSLFQ 62


>gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC
          53516]
 gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC
          53516]
          Length = 179

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R++R +  LTQ+E+  R+   + +IS+LE   ++ ++D++  L + L T +
Sbjct: 4  GEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDM 58


>gi|161505447|ref|YP_001572559.1| hypothetical protein SARI_03605 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866794|gb|ABX23417.1| hypothetical protein SARI_03605 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 204

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 29 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 88

Query: 81 LKP 83
          L+P
Sbjct: 89 LEP 91


>gi|330960406|gb|EGH60666.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 189

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E H    +L+       N R +R  A L+Q  + +++G ++  +  +E G+  +++  + 
Sbjct: 4  EHHRRAPVLQH---VSQNVRRLRNAADLSQTALADKSGVSRRMLVAIEAGEKNVSLATLD 60

Query: 68 ILAHTLDTPLWKLLK 82
           +A  LD     L++
Sbjct: 61 RVAEALDVAFSDLIQ 75


>gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans
          C54]
          Length = 184

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R++  L+ +++  RTG  +S++S+LE G S  +I  ++ LA      + +L+
Sbjct: 7  RLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQLV 63


>gi|91204486|emb|CAJ70986.1| similar to immunity repressor protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 151

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            L  + I  +N R IR+   +TQ+E+  R+G  Q +I+ LE GK   +  ++  + + L
Sbjct: 19 KFLMRKNIVGSNVRMIRERLGITQEELALRSGLTQGYINFLENGKRGYSERSLEKIVNAL 78

Query: 74 DTPLWKLL 81
             +  L 
Sbjct: 79 GIQISGLF 86


>gi|297581782|ref|ZP_06943703.1| DNA methyltransferase [Vibrio cholerae RC385]
 gi|297533876|gb|EFH72716.1| DNA methyltransferase [Vibrio cholerae RC385]
          Length = 69

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I       IRK   L+Q ++   +   +S++  +E G+  I ++ +  LA TL     +L
Sbjct: 8  IVGKRIAKIRKSKGLSQDKLALLSEIDRSYVGRIERGEVNITLEKLYELADTLGCDAKEL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 257

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R +R+E  LT  E+  + G + S++SE+E G    ++  +  +A  L+    ++L+
Sbjct: 5  GNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILE 64



 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +      R IR+E KLT  E+  R G + S++SE+E      ++  +  +A  L   +  
Sbjct: 72  LTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSVAD 131

Query: 80  LL 81
           L+
Sbjct: 132 LM 133



 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                  + +R++  LTQ E+ ++ G +   I ++E GK   ++  +  LA  L T  
Sbjct: 137 HSLGYKLKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTP 194


>gi|42525956|ref|NP_971054.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41816006|gb|AAS10935.1| DNA-binding protein [Treponema denticola ATCC 35405]
          Length = 91

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ + +N  R  R++A L+Q E+  R   +Q+ I+ +ETGK T ++D ++ + H L+   
Sbjct: 6  QQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINP 65

Query: 78 WKLL 81
            L 
Sbjct: 66 AVLF 69


>gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
          Length = 80

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N RNIR +  +TQ+E+   TG  QS IS  E G     I  +  ++  L+ P+ KLL
Sbjct: 3  VGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISKLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|239814897|ref|YP_002943807.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801474|gb|ACS18541.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 89

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+ +  R    +S++ E+E G+   +I     LA  LD  +  LL
Sbjct: 8  FGVTIRQLREGKGWSQEALAERADLNRSYVGEVERGRVIPSIVTAHKLAAALDINMVGLL 67


>gi|183220520|ref|YP_001838516.1| putative transcriptional regulator [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
 gi|189910629|ref|YP_001962184.1| transcriptional regulator [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167775305|gb|ABZ93606.1| Transcriptional regulator [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167778942|gb|ABZ97240.1| Putative transcriptional regulator [Leptospira biflexa serovar
          Patoc strain 'Patoc 1 (Paris)']
          Length = 207

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IR     +  ++ NR G +++ +S++E GKS   I  +  +A+ L+ P  +L
Sbjct: 26 VVKENLKLIRHTKGFSLDKLANRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSEL 85

Query: 81 LK 82
          LK
Sbjct: 86 LK 87


>gi|260905809|ref|ZP_05914131.1| Helix-turn-helix family protein [Brevibacterium linens BL2]
          Length = 183

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       +  R  A L+  E+  R G  +S +S LE G    +++ M  LA  LD PL 
Sbjct: 6  REQIAAAIKRERLRADLSLSEVARRAGIGKSTMSGLEAGTGNPSVETMWALAAALDIPLA 65

Query: 79 KLLKP 83
          +LL P
Sbjct: 66 RLLDP 70


>gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196]
 gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196]
          Length = 181

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          KD131]
 gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides
          KD131]
          Length = 211

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R IRK   L+   +  R+G +   +S+LE G    ++  +  ++  L  P + 
Sbjct: 5  HLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFW 64

Query: 80 LLK 82
          LL+
Sbjct: 65 LLE 67


>gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes
          L99]
 gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208]
          Length = 180

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|91774792|ref|YP_544548.1| transcriptional regulator [Methylobacillus flagellatus KT]
 gi|91708779|gb|ABE48707.1| transcriptional regulator, XRE family with cupin sensor domain
          [Methylobacillus flagellatus KT]
          Length = 212

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          K+  P   D+ I        N  ++IR++  LT  E+  R   ++  +S++E G  + ++
Sbjct: 6  KKTSPAGGDSEIKPLGKHLGNVIKDIRQQHGLTIAEVAERANISRGMLSKIENGLVSTSL 65

Query: 64 DNMIILAHTLDTPLWKLLK 82
          D +  LA++L   + +L +
Sbjct: 66 DTLEQLANSLGVTISRLFQ 84


>gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925]
 gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925]
          Length = 185

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      + +R E  LTQ ++ +R   ++ +IS+LE   ++ +I  ++ +   L T L
Sbjct: 5  EVMKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNL 64

Query: 78 WKLL 81
              
Sbjct: 65 KDFF 68


>gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55]
          Length = 116

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     RN RK A  +Q+ +  + G   +++ ++E G+S  ++ ++  +A+ L+ PL  L
Sbjct: 9  IIGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPLEIL 68

Query: 81 LK 82
           +
Sbjct: 69 FE 70


>gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC
          25827]
 gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC
          25827]
          Length = 100

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     R  RKE  L+  E+    G +Q  +S  E G+  I +DN++ LA  L+T L
Sbjct: 6  QIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDL 63


>gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)]
          Length = 71

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +  + +RK   ++Q+++  ++   +++++++E GK   +I  +  ++  L+  L +
Sbjct: 7  ESLGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVNPSIGKIKKISENLNISLCE 66

Query: 80 LLK 82
          + K
Sbjct: 67 MFK 69


>gi|313677734|ref|YP_004055730.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312944432|gb|ADR23622.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 494

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    R +R E  L+  ++  +TG + S+++E+E GK    I+ +  L+ TL+    
Sbjct: 9  KLIFGLKVRQLRLEKGLSFAQLSKQTGLSASYLNEIEKGKKYPKIEKINKLSETLEVSFD 68

Query: 79 KLL 81
           L+
Sbjct: 69 DLV 71


>gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor
          [Clostridium thermocellum ATCC 27405]
 gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum
          DSM 1313]
          Length = 179

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 32/58 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M      R +R   ++TQ+E+ +R   ++ +IS++E   ++ +I+ ++ +   L T L
Sbjct: 1  MQIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLTSPSINTLVDILQCLGTDL 58


>gi|167462690|ref|ZP_02327779.1| DNA-binding protein [Paenibacillus larvae subsp. larvae
          BRL-230010]
 gi|322384965|ref|ZP_08058621.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321150262|gb|EFX43769.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 241

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  +NIRK  + TQKE+    G ++ ++S++E  +   ++  +  +A  +   + +L
Sbjct: 4  GDRIKNIRKALRYTQKEVAENAGISRMYLSDVEKNRYNPSLSVIEKIAEAMGISVDRL 61


>gi|269794969|ref|YP_003314424.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269097154|gb|ACZ21590.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
          10542]
          Length = 204

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+    H          +     R  RK+  L+ + +  R G +   +S+LE G    ++
Sbjct: 5  RETSAGHAPSDDADTVAMLGATVRAARKQLDLSVQALAQRAGVSLGLVSQLERGLGNPSL 64

Query: 64 DNMIILAHTLDTPLWKLLKP 83
           ++  LA  L   + +LL+P
Sbjct: 65 HSIQRLASALGVSVTRLLEP 84


>gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT]
 gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT]
          Length = 185

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      + +R E  LTQ ++ +R   ++ +IS+LE   ++ +I  ++ +   L T L
Sbjct: 5  ELMNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNL 64

Query: 78 WKLL 81
              
Sbjct: 65 KDFF 68


>gi|83956173|ref|ZP_00964626.1| subunit S of type I restriction-modification system
          [Sulfitobacter sp. NAS-14.1]
 gi|83839559|gb|EAP78739.1| subunit S of type I restriction-modification system
          [Sulfitobacter sp. NAS-14.1]
          Length = 164

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPL 77
          R     N + +R+E  ++Q+++       + ++ +LE  K++ ++D +  +A  L+  P 
Sbjct: 4  RHQVGLNIQKLRRERGISQEDLALMAKVNRGYMGKLENAKNSASLDMVERIATALNVVPS 63

Query: 78 WKLL 81
          W L+
Sbjct: 64 WLLV 67


>gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1]
 gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1]
          Length = 182

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               + +RK+ K++Q ++ ++    +S IS++E GK+T ++  +  +A   D P+
Sbjct: 6  VGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPM 61


>gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905]
 gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905]
          Length = 182

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               + +RK+ K++Q ++ ++    +S IS++E GK+T ++  +  +A   D P+
Sbjct: 6  VGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPM 61


>gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme
          DSM 15981]
 gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme
          DSM 15981]
          Length = 179

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  + R IRKE  L+Q+++      ++  +S+ E G     ++ +++L++ L+  L  
Sbjct: 1  MSFAEHLRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAGYPEVETLLLLSNRLNISLDS 60

Query: 80 LL 81
          L+
Sbjct: 61 LM 62


>gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 210

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 38 VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 91


>gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AB056]
 gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AB058]
 gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AB059]
 gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
          Length = 183

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 11 VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64


>gi|182415256|ref|YP_001820322.1| XRE family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177842470|gb|ACB76722.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1]
          Length = 76

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++    +E        R  RK   L+Q++   R    ++++ ++E G+  I+  N++ +A
Sbjct: 1  MAAESAKELRALGEAIRAGRKTLGLSQEDFAERCDVHRTYVGQVERGEKNISFTNVLRIA 60

Query: 71 HTLDTPLWKLL 81
            +      LL
Sbjct: 61 RAIGQKPSVLL 71


>gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AYE]
 gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii AYE]
          Length = 210

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 38 VGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 91


>gi|26988956|ref|NP_744381.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983771|gb|AAN67845.1|AE016415_10 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 177

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R++R  A L+Q  +  R+G ++  +  +E G+  +++  + ++A  L      L++
Sbjct: 8  NVRSLRNAAGLSQAALAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLIQ 65


>gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262]
 gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262]
 gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378]
          Length = 180

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023]
          Length = 180

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|332665384|ref|YP_004448172.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332334198|gb|AEE51299.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 495

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S     ER++F    + +R+   L+  ++  + G + S+++E+E GK     + +  LA
Sbjct: 1  MSTKAQNERILFGLKVKQLRQRLSLSFADLSEKAGMSVSYLNEIEKGKKYPKGEKIQTLA 60

Query: 71 HTLDTPLWKL 80
            L+     L
Sbjct: 61 RALNVSATDL 70


>gi|257055531|ref|YP_003133363.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256585403|gb|ACU96536.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 184

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +  R++A L+  E+  R G A+S +S+LE+G    +++ +  L+  L     +L++
Sbjct: 11 AASLQRERRKAGLSLAELARRAGIAKSTLSQLESGSGNPSVETIWALSTALGVSFSQLVQ 70

Query: 83 P 83
          P
Sbjct: 71 P 71


>gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
          73102]
          Length = 83

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     +  R E   +Q+ +   TG  +++IS+LE G  + ++  +  +   L   + +
Sbjct: 8  QILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITKALGMTMSE 67

Query: 80 LLKP 83
           L+P
Sbjct: 68 FLQP 71


>gi|291545572|emb|CBL18680.1| Helix-turn-helix [Ruminococcus sp. SR1/5]
          Length = 97

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 ++ R+   LTQ+E+      + + +S +E G     +D  + +A+ LD     
Sbjct: 4  KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 77

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK+A +TQ E+  + G  +S+IS +ETGK+   +     +A  L 
Sbjct: 17 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68


>gi|167758894|ref|ZP_02431021.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC
          35704]
 gi|167663634|gb|EDS07764.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC
          35704]
          Length = 108

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R +  +TQ+ +      + S+I ++E G+  + +D++I + + L   +  LL
Sbjct: 6  LGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVTVDYLL 65

Query: 82 K 82
          +
Sbjct: 66 Q 66


>gi|330892406|gb|EGH25067.1| hypothetical protein PSYMO_27871 [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 78

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R   K+TQ+ +  + G  ++++S +E G     +  +  LA  L++    L+
Sbjct: 7  FGKVLREARLSQKVTQEALAAQAGLQRNYVSLMERGHHQPTLATIFALAVALNSSPLDLV 66

Query: 82 K 82
          K
Sbjct: 67 K 67


>gi|229591296|ref|YP_002873415.1| putative transcriptional regulator [Pseudomonas fluorescens
          SBW25]
 gi|229363162|emb|CAY50204.1| putative transcriptional regulator [Pseudomonas fluorescens
          SBW25]
          Length = 191

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          ++ PH +  +         N R +R  A L+Q  +  ++G ++  +  +E G+  +++  
Sbjct: 7  KENPHRASVLQH----VSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLST 62

Query: 66 MIILAHTLDTPLWKLLK 82
          +  +A  L+     L++
Sbjct: 63 LDRVAEALNVAFSDLIQ 79


>gi|163940192|ref|YP_001645076.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229060070|ref|ZP_04197441.1| Transcriptional regulator, XRE [Bacillus cereus AH603]
 gi|163862389|gb|ABY43448.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228719289|gb|EEL70897.1| Transcriptional regulator, XRE [Bacillus cereus AH603]
          Length = 197

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 17 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 76


>gi|332522147|ref|ZP_08398399.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332313411|gb|EGJ26396.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 138

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N R +   +Q  + +R   ++  IS+ E G ST +++N++ LA   D  L +L+
Sbjct: 4  FAEQLKNYRLKKNYSQDALADRLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLV 63

Query: 82 K 82
          +
Sbjct: 64 R 64


>gi|254000130|ref|YP_003052193.1| XRE family transcriptional regulator [Methylovorus sp. SIP3-4]
 gi|313202093|ref|YP_004040751.1| XRE family transcriptional regulator [Methylovorus sp. MP688]
 gi|253986809|gb|ACT51666.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4]
 gi|312441409|gb|ADQ85515.1| transcriptional regulator, XRE family [Methylovorus sp. MP688]
          Length = 215

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           SDA    R +  N  R IR +  LT  +I  R   ++  +S++E G  + +++ +  +A
Sbjct: 18 DSDARSLGRHL-GNVIRQIRLQHGLTIADISERASISRGMLSKIENGLVSTSLETLEQIA 76

Query: 71 HTLDTPLWKLLK 82
          + L   L +L +
Sbjct: 77 NALGVTLSRLFR 88


>gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC
          15579]
 gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC
          15579]
          Length = 183

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +G ++  +S++E G +   I+ +  +A  L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 212

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 3  RRKRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
            +        A+  +R            R++RK  ++T  E+  +TG +   +S++E G
Sbjct: 4  GSQSKLTQNPHAVREQREKNLEVAIGRQVRDLRKRQRMTGSELAQQTGLSVGMLSKIENG 63

Query: 58 KSTINIDNMIILAHTLDTPLWKLL 81
            + +++ +  LA+ L  PL +L 
Sbjct: 64 VISPSLNTLQALANALRVPLVQLF 87


>gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani
           E88]
 gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani
           E88]
          Length = 235

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           I   N + +R E  L+  ++   +G ++  +S++E G +   I+ +  +A  L  P   L
Sbjct: 58  IIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSL 117

Query: 81  LK 82
           L+
Sbjct: 118 LE 119


>gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e]
 gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland
          1988]
 gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL
          R2-561]
 gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S]
 gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161]
 gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818]
 gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes
          FSL J2-003]
 gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578]
 gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923]
 gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e]
 gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578]
 gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923]
 gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818]
          Length = 180

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|149173147|ref|ZP_01851778.1| restriction-modification system regulatory protein, putative
          [Planctomyces maris DSM 8797]
 gi|148847953|gb|EDL62285.1| restriction-modification system regulatory protein, putative
          [Planctomyces maris DSM 8797]
          Length = 73

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RK+   +Q+         ++++  +E G+  + + N+  +A TL   + +L+
Sbjct: 11 FGERVRELRKKQGYSQENFAYACELDRTYMGGIERGQRNVALRNIERIADTLGISVAELM 70


>gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis
          BI429]
 gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho
          melanesiensis BI429]
          Length = 178

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            +  R +R     TQ+E+ +R   ++S+IS+LE  + + +ID +  +   L + L
Sbjct: 4  LGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDL 59


>gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM
          2926]
 gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM
          2926]
          Length = 182

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 36/63 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R E  L+ +++  R   + S++S++E GK++ +I+N+  +A+ LD  +  
Sbjct: 1  MSLGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKASPSIENLKKIANCLDVRVSY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 183

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +G ++  +S++E G S   I+ +  +A  L+ P   L
Sbjct: 6  IIAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSNPTINTVWKIAKGLNVPYTVL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|240126773|ref|ZP_04739659.1| conjugal transfer protein TrbA [Neisseria gonorrhoeae SK-92-679]
 gi|268685351|ref|ZP_06152213.1| TrbA [Neisseria gonorrhoeae SK-92-679]
 gi|295788840|ref|YP_003600455.1| TrbA [Neisseria gonorrhoeae]
 gi|268625635|gb|EEZ58035.1| TrbA [Neisseria gonorrhoeae SK-92-679]
 gi|294769581|gb|ADF36656.1| TrbA [Neisseria gonorrhoeae]
 gi|317165624|gb|ADV09163.1| hypothetical protein NGTW08_p0033 [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 121

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF  N   +  E  L+ +++  R   + S +S +  G+    ++ M  +A+ LD PL  
Sbjct: 5  KIFFTNVLRLASEKNLSHQDLAERANLSPSSMSGITRGQGNPTLETMSAIAYALDVPLSY 64

Query: 80 LLK 82
          LL+
Sbjct: 65 LLE 67


>gi|167645955|ref|YP_001683618.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167348385|gb|ABZ71120.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 74

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++   N R +R+   + Q E+ +      +++S +E GK  I++  +  LA  L     
Sbjct: 4  RVVVGANIRALREARGVPQDELAHIAEIHTTYLSGIENGKRNISLRVLERLAAALAVTEA 63

Query: 79 KLLK 82
          +L++
Sbjct: 64 ELVR 67


>gi|302339884|ref|YP_003805090.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301637069|gb|ADK82496.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 102

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF+ N R IR     +Q  +  + G + ++I+ LE+G+   +   +  L   L+   +
Sbjct: 5  QQIFIKNLRRIRNTTGQSQSSVAEKCGLSTNYIAGLESGRRFPSPATIDKLCVALEIRPY 64

Query: 79 KLL 81
          +L 
Sbjct: 65 ELF 67


>gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
 gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str.
          JGS1495]
 gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str.
          JGS1495]
          Length = 141

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F N  + +RKE  ++Q+++      ++  IS+LE+GK+  +IDN+I+L       L
Sbjct: 3  FNNKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSL 58


>gi|294101545|ref|YP_003553403.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
 gi|293616525|gb|ADE56679.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
          Length = 123

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +RK A+LTQ+ + ++T  ++ +I  LE+ +   ++  +  LA  LD  +  
Sbjct: 1  MSLGIRIKTLRKAARLTQQALADKTDVSRIYIQALESNRRLPSMKLLSKLAQALDVEITD 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11]
 gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|169631439|ref|YP_001705088.1| putative DNA-binding protein [Mycobacterium abscessus ATCC 19977]
 gi|169243406|emb|CAM64434.1| Putative DNA-binding protein [Mycobacterium abscessus]
          Length = 191

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R+E  L+  ++  R+G ++  +S++E G     ++ + +L   L  P  +L
Sbjct: 7  LVARNVRRYRQERALSLGDLARRSGLSKQTVSKIEQGVGNPTVETLALLGEALQVPPQRL 66

Query: 81 LK 82
          L 
Sbjct: 67 LT 68


>gi|13475101|ref|NP_106665.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14025852|dbj|BAB52451.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 69

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +R +  LTQ+E+  R   +  ++  +E  + + ++  +  LA  LD    
Sbjct: 4  KEVMAINMRRLRHDQDLTQEELAARAELSMRYVGSIERARVSASVSVLGQLAKALDVDPC 63

Query: 79 KLLKP 83
          +L++P
Sbjct: 64 ELIRP 68


>gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
 gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
          Length = 211

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R IRK   L+   +  R+G +   +S+LE G    ++  +  ++  L  P + 
Sbjct: 5  HLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFW 64

Query: 80 LLK 82
          LL+
Sbjct: 65 LLE 67


>gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553]
 gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R++  L+ +++  RTG  +S++S+LE G S  +I  ++ LA      + +L+
Sbjct: 7  RLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQLV 63


>gi|295699801|ref|YP_003607694.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439014|gb|ADG18183.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 104

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 8  EPHLSDAILRE----RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           PH+++ +       + +   N R +R +  ++Q+ + +R G  ++ +S +E G   + +
Sbjct: 3  LPHMAENVSPRLLELQALIAKNLRLLRDKKGMSQEVLADRAGLHRTQLSVIERGLRNMRL 62

Query: 64 DNMIILAHTLDTPLWKLL 81
          D ++ LA  L     +LL
Sbjct: 63 DTLVSLAAALGVSETELL 80


>gi|153009178|ref|YP_001370393.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151561066|gb|ABS14564.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 76

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N + +R+   L+Q+E+ +R    ++++S LE    + +ID +  LA  L+    
Sbjct: 4  REVLAQNLKALRQARGLSQEELAHRADIDRTYVSSLERCVYSASIDVVDRLAIVLEVEAS 63

Query: 79 KLLK 82
           LLK
Sbjct: 64 DLLK 67


>gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 179

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 39/78 (50%)

Query: 5   KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
            +   H+       ++    + RN+R+ A L+Q+++  R    ++++S++E  K+T  + 
Sbjct: 50  PQPAVHVPSHSSHSQLQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLS 109

Query: 65  NMIILAHTLDTPLWKLLK 82
           ++  LA  L   L  LL 
Sbjct: 110 SLERLAKALQVTLPDLLT 127


>gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
 gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R++R +  LT KE+  +TG + S++S++E G S++ I ++  +A  L+ P+
Sbjct: 6  EKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPI 59


>gi|294632875|ref|ZP_06711434.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292830656|gb|EFF89006.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 190

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D    E +   +  R  R+   +   E+  R+G +Q ++S+LE G +T ++ ++  +A 
Sbjct: 4  PDPS-PEALAVGSVIRGHRRRLGVPMAELAARSGLSQPFLSQLERGLTTPSLASIYKIAD 62

Query: 72 TLDTPLWKLLKP 83
           L  P    L+P
Sbjct: 63 ALSLPPGIFLRP 74


>gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++ K+T +E+  + G   S +S++E G+   +I+ + +++  L+ P++K  
Sbjct: 7  GKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMFKFF 65


>gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 201

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     R  R    L+  E+  R G A+S +S+LE+G    +++ +  LA  L  P  +
Sbjct: 25 EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSR 84

Query: 80 LLKP 83
          L+ P
Sbjct: 85 LVDP 88


>gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL
          N1-017]
 gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL
          N1-017]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum
          thermopropionicum SI]
 gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum
          thermopropionicum SI]
          Length = 224

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+E  LTQ E+  + G + + I+  E GK  I ID++  +A+ L  PL   L
Sbjct: 6  GARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYFL 64


>gi|89899047|ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118]
 gi|89343784|gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain
          [Rhodoferax ferrireducens T118]
          Length = 197

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             + +   ++M      R  R+   LT  E+  ++G +   +S++E G S+ ++ +M  
Sbjct: 3  KQTTASADAQKMGLGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQ 62

Query: 69 LAHTLDTPLWKLL 81
          +   L  PL  L 
Sbjct: 63 ICTALGVPLSWLF 75


>gi|302188150|ref|ZP_07264823.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae 642]
          Length = 201

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPTDPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
 gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
          Length = 229

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 9   PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           PH      RE+++        R  RK+  +T  E+   TG +   +S++E G ++ ++  
Sbjct: 29  PHSIREGEREKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTT 88

Query: 66  MIILAHTLDTPLWKLLK 82
           +  LAH L  PL    +
Sbjct: 89  LQTLAHALSVPLTSFFR 105


>gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120]
 gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|300724430|ref|YP_003713750.1| BamHI control element (fragment) [Xenorhabdus nematophila ATCC
          19061]
 gi|297630967|emb|CBJ91647.1| BamHI control element (fragment) [Xenorhabdus nematophila ATCC
          19061]
          Length = 56

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 26/47 (55%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+   ++ G  ++++S +E G     ++ + ++A+ L   L +L 
Sbjct: 1  MSQEAFADKCGLDRTYVSGIERGVRNPTLEIIYVIANGLQIELNELF 47


>gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 252

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+E   + +++  R G + S++SE+E G    ++  +  +A  L+ P  +L++
Sbjct: 5  GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIE 64



 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             +  R  R+E  LTQ E+    G +   I ++E GK   ++  +  +   LD   
Sbjct: 138 LGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKTLERVGAVLDISP 193



 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+ A      +    G + S++SE+E G     ID +  +   L+ PL
Sbjct: 74  GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPL 128


>gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
 gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
          Length = 181

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          2.4.1]
 gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          ATCC 17029]
 gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
          2.4.1]
 gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
          ATCC 17029]
          Length = 211

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R IRK   L+   +  R+G +   +S+LE G    ++  +  ++  L  P + 
Sbjct: 5  HLIGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFW 64

Query: 80 LLK 82
          LL+
Sbjct: 65 LLE 67


>gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 267

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  IF    + +R+EA LTQ E+  + G  ++ +S  E G    +ID +  +A   D   
Sbjct: 2  EENIFAVRLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIAMYFDVSS 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DYLL 65


>gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC
          25827]
 gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC
          25827]
          Length = 185

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+   L+  E+   +G +++ +S+LE+G S   +D +  +A  L  PL  L  
Sbjct: 10 GQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSNPRVDTLEAIAIALRFPLSDLFT 69


>gi|206975640|ref|ZP_03236552.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97]
 gi|206746102|gb|EDZ57497.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97]
          Length = 110

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R +  LTQ+ +      + S++ ++E G+  +++D ++ LA+ L   +  LL
Sbjct: 6  LGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVTVDYLL 65


>gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM
          6724]
 gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM
          6724]
          Length = 105

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R IRK+  +  +++  +TG + S+IS +E G    ++  +  +A  L+ P
Sbjct: 3  VGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLP 57


>gi|306521451|ref|ZP_07407798.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-32g58]
          Length = 166

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M    N + IRK+ +LTQ ++   +G +++ +   E  K   +ID +  LA  L   
Sbjct: 1  MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 57


>gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 177

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R  A LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L   +    
Sbjct: 4  GSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKDFF 62


>gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 120

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R    +TQ+++ N  G   + IS +ETG S  ++  +I + + LD    +LL
Sbjct: 8  GKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSADELL 66


>gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873]
 gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873]
          Length = 179

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R E  LTQ ++ +R   ++ +IS+LE   ++ +I  ++ +   L T L    
Sbjct: 4  GEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKDFF 62


>gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
 gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
          Length = 181

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 81

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R E  ++Q+ +   TG  +S +  +E G+  + I N+I +A  L+    KLLK
Sbjct: 18 GATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKLLK 77


>gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 221

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK  +LT   +   TG +   +S++E G  + +++ + +LA  L  PL +L 
Sbjct: 38 GRQVRELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPLMQLF 96


>gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459]
 gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064]
 gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175]
 gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype
          4b str. CLIP 80459]
 gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816]
 gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|134293636|ref|YP_001117372.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134136793|gb|ABO57907.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia vietnamiensis G4]
          Length = 191

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 35/68 (51%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
            +D  +   +   N  R +R+  KLT  E     G ++ ++S++E G++T +I +++ +
Sbjct: 3  VSADQSVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRI 62

Query: 70 AHTLDTPL 77
          A  L   +
Sbjct: 63 AQALGVTM 70


>gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM
          12042]
 gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM
          12042]
          Length = 647

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +  RK A  TQ+++  +   ++  +S+ E G+S  ++D +  LA+     + +L+
Sbjct: 3  LAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSVPSLDKLRQLANCFGISVDELV 62

Query: 82 K 82
          +
Sbjct: 63 Q 63


>gi|187934446|ref|YP_001886145.1| MerR family transcriptional regulator [Clostridium botulinum B
          str. Eklund 17B]
 gi|187722599|gb|ACD23820.1| transcriptional regulator, MerR family [Clostridium botulinum B
          str. Eklund 17B]
          Length = 118

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  LT KE+   TG + S+IS++E  +   +IDN+ ILA  LD  + +
Sbjct: 1  MSVGEKLKLFRNKKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQ 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1]
 gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R +  LTQ+E+  RT  ++ +IS+LE   ++ +I+ +  +   L +    
Sbjct: 1  MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKD 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|288921295|ref|ZP_06415578.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288347326|gb|EFC81620.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 210

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R ++    R +R+E   T +++ +    +  ++SE+E G+   + + +  +   L
Sbjct: 15 VTPPLRDLYGEALRRLRREQGRTLRDVADAAQVSMPYLSEVERGRKEASSEVLAAICRAL 74

Query: 74 DTPLWKLL 81
             L  LL
Sbjct: 75 GIRLVDLL 82


>gi|316934629|ref|YP_004109611.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315602343|gb|ADU44878.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 86

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I   N R  R+   L+Q+E+ +R    +++IS LE       ID +  +A  L     
Sbjct: 4  REILALNLRKYRRARGLSQEELAHRADIDRTYISALERCVYAAGIDVVDRIARVLGVEAA 63

Query: 79 KLLK 82
           LL+
Sbjct: 64 DLLR 67


>gi|167747594|ref|ZP_02419721.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662]
 gi|239623032|ref|ZP_04666063.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652956|gb|EDR97085.1| hypothetical protein ANACAC_02315 [Anaerostipes caccae DSM 14662]
 gi|239522611|gb|EEQ62477.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 123

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           N R  R+E  LTQ+ +    G + S +S++E+G  TI +   I +   L+ 
Sbjct: 10 ENIRRAREERGLTQEALAELAGISHSHLSKVESGSRTIGMKTYIKILEALEV 61


>gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 190

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
            SD + R      NN + +R    L+  E+   +G +++ +S LE+G S   +D +  +
Sbjct: 5  QQSDRLKRTYTNIGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSNPRVDTLDSI 64

Query: 70 AHTLDTPLWKLL 81
          A  L   L  LL
Sbjct: 65 ASALRLTLGDLL 76


>gi|167589656|ref|ZP_02382044.1| transcriptional regulator, XRE family protein [Burkholderia
          ubonensis Bu]
          Length = 76

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++    G  +S++ E+E G++  ++  +  +A   D  +  LL
Sbjct: 8  FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASLVTVDKIARAFDVSISTLL 67


>gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 184

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + R  R+ + ++  E+  R G A+S +S+LE+G    +++ +  L   LD P+ +LL 
Sbjct: 11 GPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQLLD 70

Query: 83 P 83
          P
Sbjct: 71 P 71


>gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b
          str. SLCC5334]
 gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b
          str. SLCC5334]
          Length = 180

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|319793353|ref|YP_004154993.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595816|gb|ADU36882.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 89

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+++  R+   +S++ E+E G+   +I     LA  L   +  LL
Sbjct: 8  FGVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGINIVNLL 67


>gi|307330189|ref|ZP_07609338.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884209|gb|EFN15246.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 190

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRCRNERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|225019713|ref|ZP_03708905.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum
          DSM 5476]
 gi|224947558|gb|EEG28767.1| hypothetical protein CLOSTMETH_03666 [Clostridium methylpentosum
          DSM 5476]
          Length = 83

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +  +     + +R+   ++Q+ +    G  ++  S++E G  +  ID +  +   L  
Sbjct: 1  MVDTKLIGAVIQQLRQRKGISQEVLSGLAGLDRTHYSKIERGLRSPTIDTLFKIGSALQM 60

Query: 76 PL 77
          P 
Sbjct: 61 PP 62


>gi|220930676|ref|YP_002507585.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|220001004|gb|ACL77605.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 60

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R+   LTQ E+ +RTG +Q  IS +E G+   +++ +  LA  LDT + +LL
Sbjct: 2  KKLKQARESKNLTQSELASRTGISQQHISMIENGERIGSVETLRELAKALDTSVDQLL 59


>gi|209520107|ref|ZP_03268882.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209499480|gb|EDZ99560.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 70

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++R+    +Q+++    G  +S++ E+E G +  +I     LA  L+ P+  LL
Sbjct: 8  FGAAVRSLREALSWSQEQLAEYAGLNRSYVGEIERGSAIASIVTADKLARALNVPIGTLL 67


>gi|323341429|ref|ZP_08081671.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
 gi|323091136|gb|EFZ33766.1| XRE family transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
          Length = 113

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
            +  R  R  A +TQ+E+   +  + ++IS++E  K   ++I+ ++ + + LD  + ++
Sbjct: 7  LGSKIRKYRHLAGMTQEELAEYSNLSVNYISKIEREKKQNVSIEKLVDICNALDISVEEI 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|163734643|ref|ZP_02142082.1| DNA-binding protein [Roseobacter litoralis Och 149]
 gi|161392136|gb|EDQ16466.1| DNA-binding protein [Roseobacter litoralis Och 149]
          Length = 218

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 9  PHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          PH +    RE+++        R  RK+  +T  E+   TG +   +S++E G ++ ++  
Sbjct: 18 PHGTRDGEREKVLEVAIGREVRGYRKQQGITVAELSALTGISIGMLSKIENGNTSPSLTT 77

Query: 66 MIILAHTLDTPLWKLLK 82
          +  LA+ L  PL    +
Sbjct: 78 LQTLANALSVPLTSFFR 94


>gi|154498955|ref|ZP_02037333.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC
          29799]
 gi|150271795|gb|EDM99021.1| hypothetical protein BACCAP_02947 [Bacteroides capillosus ATCC
          29799]
          Length = 115

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N    R+ A LTQ  +    G + +++S +E G+  + ++ +   A  L+  +  
Sbjct: 8  EIIGTNIAKYREAAGLTQAALAEIIGISTAFVSRVERGQKKMKVETLYATAKALNVSVNA 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 81

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R+   L+Q+ + + TG  +S +  +E G+  + + N++ +A  L+  L +L
Sbjct: 16 LLGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQL 75

Query: 81 L 81
           
Sbjct: 76 F 76


>gi|261368944|ref|ZP_05981827.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282568951|gb|EFB74486.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 108

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N R  R E  L Q+++    G + +++  +E G+ T +++ ++ + + L+     +L 
Sbjct: 7  GRNIRQYRLERDLRQEDLAEAVGVSTNYMGMVERGEKTPSLETLVAILNALEISADMVLT 66


>gi|134099786|ref|YP_001105447.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133912409|emb|CAM02522.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 192

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+ A L+  E+  R+G A+  +S+LE+G     I+ +  L++ L  P+  L
Sbjct: 1  MLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSSL 60

Query: 81 LK 82
          L 
Sbjct: 61 LT 62


>gi|330951980|gb|EGH52240.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae Cit 7]
          Length = 199

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+  
Sbjct: 2  PTDPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSR 61

Query: 69 LAHTLDTPLWKLL 81
          L   L  P+ KL 
Sbjct: 62 LCDVLGMPMSKLF 74


>gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA]
 gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA]
          Length = 143

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +  +N ++ RK   LTQ+++  R G ++  +++ ETG ST ++ N   LA  LD  L 
Sbjct: 2  KNMIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLD 61

Query: 79 KLL 81
           L+
Sbjct: 62 ALV 64


>gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 118

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              RN R +  ++Q +I  RTG  + ++S +E G +  ++D +  +A  +D  L
Sbjct: 4  GETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVAL 58


>gi|255616990|ref|XP_002539799.1| conserved hypothetical protein [Ricinus communis]
 gi|223502237|gb|EEF22585.1| conserved hypothetical protein [Ricinus communis]
          Length = 76

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F +  R +R E  L+Q+ +    G  +++IS+LE G    ++  +  L   L      
Sbjct: 6  KAFGSLLRELRNERALSQEALAADAGLTRNYISQLELGSKCPSLRTVFKLCKVLGVAPED 65

Query: 80 LL 81
          ++
Sbjct: 66 VV 67


>gi|229011674|ref|ZP_04168857.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
 gi|229133251|ref|ZP_04262082.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST196]
 gi|228650195|gb|EEL06199.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST196]
 gi|228749632|gb|EEL99474.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
          Length = 205

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 84


>gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 190

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R  A ++  E+   +G + S +S +E G  + +++ +  LA+ L  P  +L 
Sbjct: 10 GTQVRALRMAADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRLF 68


>gi|152995548|ref|YP_001340383.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836472|gb|ABR70448.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1]
          Length = 176

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R    L+  ++    G A+S +S +E G+    ++ +  LA  L+ P   L+
Sbjct: 9  LGRNIQKMRMAKGLSLSQLALDAGLAKSNLSRIEQGEGNPTLETIWRLAVQLNVPFGDLV 68


>gi|302532682|ref|ZP_07285024.1| transcriptional regulator [Streptomyces sp. C]
 gi|302441577|gb|EFL13393.1| transcriptional regulator [Streptomyces sp. C]
          Length = 191

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E +      R  R   +++   +  R+G +Q ++S+LE G +T ++ ++  +A  LD  
Sbjct: 8  PEAIEVGRAIRECRTARRVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALDVA 67

Query: 77 LWKLLKP 83
              L+P
Sbjct: 68 PGTFLRP 74


>gi|146302279|ref|YP_001196870.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146156697|gb|ABQ07551.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 76

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R++  L+Q+++ +  G  ++ I  +E  K    I  +I +A+ LD  L  LL
Sbjct: 12 LGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELADLL 71


>gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2]
 gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2]
          Length = 147

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK+   TQ ++  +   ++S+++++E  +   +++ +  +A  L+ P+  
Sbjct: 1  MSVGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYNPSVETLSSIAKALNIPVSN 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 490

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E  LS     + + F    +++RK+  LT  ++  R G A S +S LE GK    +  + 
Sbjct: 7  EEQLSLTHELDLLAFGQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLK 66

Query: 68 ILAHTLDTPLWKLLK 82
           LA  L+ P+ +LL+
Sbjct: 67 SLATALNVPVEELLR 81


>gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL
          2338]
          Length = 186

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     R  R    L+  E+  R G A+S +S+LE+G    +++ +  LA  L  P  +
Sbjct: 10 EIISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLWALAVALGVPFSR 69

Query: 80 LLKP 83
          L+ P
Sbjct: 70 LVDP 73


>gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21193]
          Length = 62

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +N+R+   LTQ+E+  RT  ++ +IS++E+  ++ +++  + +   L T   +  
Sbjct: 4  GNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSEFF 62


>gi|237739116|ref|ZP_04569597.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229423716|gb|EEO38763.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 187

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +NIRK  KL  KE+ ++ G + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 9  VGMTIKNIRKSKKLLLKEVASKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 68


>gi|320449325|ref|YP_004201421.1| methyltransferase [Thermus scotoductus SA-01]
 gi|320149494|gb|ADW20872.1| methyltransferase [Thermus scotoductus SA-01]
          Length = 570

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R+   LT   +  + G A+S +  LE G++   +  +  LA  L+ P  +L+
Sbjct: 9  VGQNLRRLRQARGLTLSGLAAKAGIAKSLLHALEAGRANPTLATLWALARALEVPFGELV 68

Query: 82 K 82
          +
Sbjct: 69 Q 69


>gi|312140854|ref|YP_004008190.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311890193|emb|CBH49511.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 198

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +  R E +++  ++  R   ++  +S++E G     ++ +  +A  LD PL +L
Sbjct: 6  LIARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNPTVETIDAIATALDVPLRRL 65

Query: 81 LK 82
          + 
Sbjct: 66 VT 67


>gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf]
 gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf]
          Length = 92

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  R +R+E +LTQ+E+      ++  +S  E G++   ID ++ +A+  +  L  L
Sbjct: 1  MFGDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium
          prausnitzii M21/2]
          Length = 120

 Score = 58.1 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R    +TQ+++ N  G   + IS +ETG S  ++  +I + + LD    +LL
Sbjct: 8  GKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSADELL 66


>gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905]
 gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905]
          Length = 181

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RK   LT +E+    G   S +S++E G +  +I  + +LA TLD P 
Sbjct: 2  ENIDIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPT 61

Query: 78 WKLL 81
          +   
Sbjct: 62 FTFF 65


>gi|62182502|ref|YP_218919.1| hypothetical protein SC3932 [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62130135|gb|AAX67838.1| hypothetical protein SCH_3932 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|320088451|emb|CBY98210.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|322716998|gb|EFZ08569.1| hypothetical protein SCA50_4196 [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
 gi|323132385|gb|ADX19815.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. 4/74]
          Length = 204

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 29 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 88

Query: 81 LKP 83
          L+P
Sbjct: 89 LEP 91


>gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 84

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +R++ +L+Q+ + N  G     +SE+E G        +  LA  L   + +L
Sbjct: 13 LARTIRQLRRDRELSQEALANAAGVHPKHLSEIERGNKDPRASTVARLADALGVSIGEL 71


>gi|241759132|ref|ZP_04757240.1| Helix-turn-helix [Neisseria flavescens SK114]
 gi|241320551|gb|EER56828.1| Helix-turn-helix [Neisseria flavescens SK114]
          Length = 76

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R IRK++ + Q+ +       +S++  +E G+  I ID +  L+  L+  +  L
Sbjct: 7  LIGIKIREIRKQSNINQESLALLADIDRSYMGRIERGEVNITIDKLYQLSSALNCSVHDL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|153810196|ref|ZP_01962864.1| hypothetical protein RUMOBE_00577 [Ruminococcus obeum ATCC 29174]
 gi|149833375|gb|EDM88456.1| hypothetical protein RUMOBE_00577 [Ruminococcus obeum ATCC 29174]
          Length = 124

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H+     +E  +F   F+N R E KLT +E+  +   +  ++ E+E G    +   +  L
Sbjct: 5  HMPKQTDKELGLF---FKNARHEQKLTYEELAEKAEMSSRYLKEIENGGRVPSFHKIRKL 61

Query: 70 AHTLDTPLWKLLKP 83
             L+ P   L  P
Sbjct: 62 VRALNVPPEPLFYP 75


>gi|28869772|ref|NP_792391.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853017|gb|AAO56086.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 209

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +  + P+     L+         +  R+  +L   ++    G +Q  +S++E  + + ++
Sbjct: 7  QPMNMPNEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSL 66

Query: 64 DNMIILAHTLDTPLWKLL 81
          DN+  L   L  P+ KL 
Sbjct: 67 DNLSRLCDVLGMPMSKLF 84


>gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14]
 gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162]
          Length = 211

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM
           16841]
 gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               + +R +  LTQ+E+ +R+   + +IS+LE  ++T +I  ++ +   L T   +   
Sbjct: 65  GKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNTPSIGTLLDIIQCLGTTPAEFFT 124


>gi|17547868|ref|NP_521270.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430173|emb|CAD16858.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 113

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          KR +P  S        +     +  R  A  +Q+ +       +++IS +E G +  +I+
Sbjct: 8  KRTDPSTSRPAPILSAL-GERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIE 66

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  + + L+  L +L  P
Sbjct: 67 TLANICYALNVTLAELFGP 85


>gi|330976223|gb|EGH76285.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 193

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +            N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 6  HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 65

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 66 VAEALEVAFSDLIQ 79


>gi|293364818|ref|ZP_06611535.1| XRE family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|291316268|gb|EFE56704.1| XRE family transcriptional regulator [Streptococcus oralis ATCC
          35037]
          Length = 115

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       R IRKE  L+Q+ +  + G    +IS LET  S I ID +  +   L+    
Sbjct: 7  QKYIGQRIRIIRKEKNLSQQNLSEKAGVGIDYISNLETKGSNIKIDTLEKIITALNITPS 66

Query: 79 KLLK 82
          +L +
Sbjct: 67 ELFE 70


>gi|257486736|ref|ZP_05640777.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331010206|gb|EGH90262.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 156

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  F  + + +R    L+Q+ + +  G  +Q ++S+LE GKS +++D    LA  L    
Sbjct: 4  RHSFAASLQLLRIRKGLSQENLGDIEGSVSQPYVSKLELGKSAVSLDTSYQLAAALKVEP 63

Query: 78 WKLL 81
            LL
Sbjct: 64 ITLL 67


>gi|225570756|ref|ZP_03779779.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM
          15053]
 gi|225160218|gb|EEG72837.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM
          15053]
          Length = 199

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           RK     L+D       +   + R+ R++  +T +++   TG +  ++S LE   ++  
Sbjct: 10 GRKGAWKELNDI-----QLIGYSIRSQRRKKGMTLQQLSEATGLSIGYLSNLERNANSPT 64

Query: 63 IDNMIILAHTLDTPLWKLLK 82
          + N+  +     T L+ LL+
Sbjct: 65 LVNIQKICEAFGTSLFSLLE 84


>gi|241203027|ref|YP_002974123.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240856917|gb|ACS54584.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 115

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R  RK   ++ KE+  ++G +Q ++SE+ETGK   ++D +  +A  LD  L  +
Sbjct: 60  VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDLDDV 114


>gi|154149916|ref|YP_001403534.1| XRE family transcriptional regulator [Candidatus Methanoregula
          boonei 6A8]
 gi|153998468|gb|ABS54891.1| putative transcriptional regulator, XRE family [Methanoregula
          boonei 6A8]
          Length = 91

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF    R  RK  +++Q+ +   TG  +++IS +E GK +     ++ +   ++    +
Sbjct: 13 EIFGKIIREERKAKEISQERLARLTGLDRTFISLIENGKRSPTFSTILKICSAIEIDPSE 72

Query: 80 LL 81
          L 
Sbjct: 73 LF 74


>gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis
          ATCC 700641]
 gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis
          ATCC 700641]
          Length = 295

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 38/62 (61%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N ++IRK+  ++Q+ +  + G ++  +++ ETG    +I+NMI +++  +  + +
Sbjct: 1  MTFAENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum
          DSM 3986]
 gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum
          DSM 3986]
          Length = 177

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R  A LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L   +    
Sbjct: 4  GSKLKRLRVLAGLTQEELADRAELSKGFISQLENNITSPSIATLLDILQCLGVQIKDFF 62


>gi|194016129|ref|ZP_03054744.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194012484|gb|EDW22051.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 187

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R +R + KL+ +++   TG +++ I ++E G+ST  I  +  +A+ L     +L
Sbjct: 7  IISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSEL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum
          Rt17-B1]
 gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum
          Rt17-B1]
          Length = 175

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R     TQ+E+ +R   ++S+IS+LE+ K + +++ +  +   L T L    
Sbjct: 4  GSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKVSPSVETLERVLRVLGTDLKHFF 62


>gi|325675508|ref|ZP_08155192.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707]
 gi|325553479|gb|EGD23157.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707]
          Length = 241

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 8   EPHLSDAILRERM------IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           E   + +   ER       +   N +  R E +++  ++  R   ++  +S++E G    
Sbjct: 30  EHRTAPSTSTERRPVDSNGLIARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNP 89

Query: 62  NIDNMIILAHTLDTPLWKLLK 82
            ++ +  +A  LD PL +L+ 
Sbjct: 90  TVETIDAIATALDVPLRRLVT 110


>gi|107029107|ref|YP_626202.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116689734|ref|YP_835357.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|170733070|ref|YP_001765017.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|105898271|gb|ABF81229.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia AU 1054]
 gi|116647823|gb|ABK08464.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia HI2424]
 gi|169816312|gb|ACA90895.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 191

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D  +   +   N  R +R+  KLT  E     G ++ ++S++E G++T +I +++ +A 
Sbjct: 5  PDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQ 64

Query: 72 TLDTPL 77
           L   +
Sbjct: 65 ALGVTM 70


>gi|332297685|ref|YP_004439607.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332180788|gb|AEE16476.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 107

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  RK    TQ+++  +   +  +++++E G+ + +++ +  ++ +L  P   L
Sbjct: 7  VLGQNIRKFRKNLGWTQEQLAEKAQISVPFMTQIELGRKSASLEVIENISKSLGVPYDAL 66

Query: 81 LK 82
           K
Sbjct: 67 FK 68


>gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 211

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii
          ACICU]
 gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter
          baumannii 1656-2]
          Length = 183

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 11 VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64


>gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 310

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++M F  N +N+RK   L+Q+++  +   ++  +S+ E G S   +D ++IL       +
Sbjct: 2  DKMNFNTNLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNM 61

Query: 78 WKLLK 82
           +L+K
Sbjct: 62 DELVK 66


>gi|320105370|ref|YP_004180960.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319923891|gb|ADV80966.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 89

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 36/71 (50%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          + AI      F  + R +R++  ++Q+ +    G+ +++I +LE G+ + ++  +  LA 
Sbjct: 10 ARAIRSPEEAFGASLRVLREQVSISQETLAAEGGYHRTYIGQLERGEKSPSLRTIFALAQ 69

Query: 72 TLDTPLWKLLK 82
           L      LL+
Sbjct: 70 VLKVQPSDLLR 80


>gi|299065294|emb|CBJ36462.1| putative transcription regulator protein [Ralstonia solanacearum
          CMR15]
          Length = 109

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          KR +P  S        +     +  R  A  +Q+ +       +++IS +E G +  +I+
Sbjct: 4  KRTDPSTSRPAPILSAL-GERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIE 62

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  + + L+  L +L  P
Sbjct: 63 TLANICYALNVTLAELFGP 81


>gi|260684687|ref|YP_003215972.1| putative phage DNA-binding protein [Clostridium difficile CD196]
 gi|260688345|ref|YP_003219479.1| putative phage DNA-binding protein [Clostridium difficile R20291]
 gi|260210850|emb|CBA65947.1| putative phage DNA-binding protein [Clostridium difficile CD196]
 gi|260214362|emb|CBE06743.1| putative phage DNA-binding protein [Clostridium difficile R20291]
          Length = 280

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N + IRK+ +LTQ ++   +G +++ +   E  K   +ID +  LA  L   
Sbjct: 30 GKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 83


>gi|228908158|ref|ZP_04072006.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
 gi|228851576|gb|EEM96382.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
          Length = 96

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E     G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM
          15897]
 gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM
          15897]
          Length = 217

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +  R E KLTQ+++    G ++  IS  E  KS  +I ++I ++   D  L  LLK
Sbjct: 6  GSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65


>gi|291005623|ref|ZP_06563596.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 200

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +R+ A L+  E+  R+G A+  +S+LE+G     I+ +  L++ L  P+  
Sbjct: 8  QVLAANLRALRERAGLSLSEVARRSGIAKGTLSQLESGAGNPTIETVFSLSNALSVPVSS 67

Query: 80 LLK 82
          LL 
Sbjct: 68 LLT 70


>gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 181

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  LT KE+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 2  ENIDIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|229096902|ref|ZP_04227871.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29]
 gi|228686512|gb|EEL40421.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29]
          Length = 186

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E     G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|219667743|ref|YP_002458178.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219538003|gb|ACL19742.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 371

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F ++ R +R+   L+   +   +G +QS+I  +E+G+    ++ +  LA  L   L +LL
Sbjct: 3  FGSHLRQLRENHMLSTSRLSKLSGLSQSFIFRIESGEKQPTLETLRKLAQGLGISLGELL 62


>gi|167753959|ref|ZP_02426086.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216]
 gi|167658584|gb|EDS02714.1| hypothetical protein ALIPUT_02244 [Alistipes putredinis DSM 17216]
          Length = 106

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 36/67 (53%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             E     N  R +RKE ++T +E+  R    +S +S +E+G++ + +  M I+ + L+ 
Sbjct: 40  QEEIKFISNKIRELRKEKQMTVQELAYRCDMERSNMSRIESGRTNLTVKTMCIICNALNV 99

Query: 76  PLWKLLK 82
            L  +++
Sbjct: 100 NLRDIIR 106


>gi|157691284|ref|YP_001485746.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157680042|gb|ABV61186.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 184

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R +R + KL+ +++   TG +++ I ++E G+ST  I  +  +A+ L     +L
Sbjct: 7  IISKNVRLLRDQKKLSLEKMAELTGVSKTMIGQIERGESTPTITTLWKIANGLKVSFSEL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|134288000|ref|YP_001110164.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134132650|gb|ABO60276.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
          G4]
          Length = 80

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R+ R E ++TQ+ +    G  +++IS LE G+ +  +D +++L   L+  L + +
Sbjct: 9  FGTVLRSFRIERRVTQESLGFSAGRDRTYISLLELGQRSPTLDTIVVLCRALNVTLNEFI 68


>gi|330897368|gb|EGH28787.1| peptidase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 286

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           RK D      A   +RM F +  +  R+ AKL Q E+  R G  Q+ IS+LE GKS    
Sbjct: 51  RKTDLQGYGSARNTQRMEFKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKATA 110

Query: 64  DNMIILAHTLDTP-LW 78
            ++  +A       LW
Sbjct: 111 -HVAKIADVCGVNALW 125


>gi|295099191|emb|CBK88280.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Eubacterium cylindroides T2-87]
          Length = 464

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          LR+R   ++     R E  ++Q E+  R G  +S I+ LE+G     +D ++ +A  L  
Sbjct: 4  LRKRQKIISQLVEARLEQGISQAELARRLGIQRSGINRLESGTQNPTLDMILKIASALGK 63


>gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1]
 gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1]
          Length = 177

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R    LTQ+E+ +R   ++ +IS++E   ++ +I  ++ +   L T + +
Sbjct: 1  MSIGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLTSPSIATLMDILQCLGTTIGE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|225405572|ref|ZP_03760761.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme
          DSM 15981]
 gi|225042882|gb|EEG53128.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme
          DSM 15981]
          Length = 81

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  R +R+  + TQ+E     G ++++   LE G+ ++ ++    +A  L+  L  L 
Sbjct: 17 FGNELRKMREARRYTQEEFAQLCGISRAYYGRLERGEHSVTLERCKQIADALNLTLSDLF 76


>gi|220925537|ref|YP_002500839.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219950144|gb|ACL60536.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 124

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ER++   N  R  R+   LT K +  + G AQ ++S++ETG+    ID +  LA  L+ 
Sbjct: 58  VERLLGGENRIRVWREHRGLTAKALAEKAGIAQPFLSQIETGRREGTIDTLRKLAQALNL 117

Query: 76  PLWKLL 81
            L  L+
Sbjct: 118 TLDDLV 123


>gi|54293993|ref|YP_126408.1| hypothetical protein lpl1052 [Legionella pneumophila str. Lens]
 gi|53753825|emb|CAH15288.1| hypothetical protein lpl1052 [Legionella pneumophila str. Lens]
 gi|307609819|emb|CBW99336.1| hypothetical protein LPW_11141 [Legionella pneumophila 130b]
          Length = 84

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              + ++     R IRKE   +Q+   N     + +   +E G++ I I N++ +   L
Sbjct: 2  KKQTDLIVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGL 61

Query: 74 DTPLWKLLKP 83
          D    +L  P
Sbjct: 62 DVTPNELFPP 71


>gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407]
 gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407]
          Length = 119

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R    L+Q E+  +   ++  +SE E G++T +ID ++ LA      L  
Sbjct: 2  KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEATPDIDKLVQLAEIFGVSLDY 61

Query: 80 LL 81
          L+
Sbjct: 62 LV 63


>gi|116250392|ref|YP_766230.1| hypothetical protein RL0620 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255040|emb|CAK06114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 115

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 32/55 (58%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R  RK   ++ KE+  ++G +Q ++SE+ETGK   ++D +  +A  LD  L  +
Sbjct: 60  VRVFRKHRGMSIKELAEKSGLSQPYLSEIETGKKEGSLDALRSIASALDVDLDDV 114


>gi|54298268|ref|YP_124637.1| hypothetical protein lpp2326 [Legionella pneumophila str. Paris]
 gi|53752053|emb|CAH13479.1| hypothetical protein lpp2326 [Legionella pneumophila str. Paris]
          Length = 87

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              + ++     R IRKE   +Q+   N     + +   +E G++ I I N++ +   L
Sbjct: 2  KKQTDLIVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGL 61

Query: 74 DTPLWKLLKP 83
          D    +L  P
Sbjct: 62 DVTPNELFPP 71


>gi|99081998|ref|YP_614152.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038278|gb|ABF64890.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
           sp. TM1040]
          Length = 239

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R R+      + +R  A +T ++   RT  A S I ++E GK + + +N++ LA     
Sbjct: 49  QRIRLELGRRVKGLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGYGV 108

Query: 76  PLWKLL 81
            L KL+
Sbjct: 109 GLEKLI 114


>gi|229115891|ref|ZP_04245288.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-3]
 gi|228667553|gb|EEL22998.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-3]
          Length = 186

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E     G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|254512974|ref|ZP_05125040.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221532973|gb|EEE35968.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 195

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + + +R+  K + + +  ++G + + IS +E G  + +ID +  LA  L+ P+  L +
Sbjct: 15 GASLKELRQSRKQSARWLAEQSGISAAMISRIENGLVSPSIDTLAALADALEVPIVSLFR 74


>gi|121593920|ref|YP_985816.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42]
 gi|120606000|gb|ABM41740.1| helix-turn-helix domain protein [Acidovorax sp. JS42]
          Length = 90

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H +D +L          R  R+   ++Q+E+ +R+   +S++S +E G     I ++  +
Sbjct: 17 HANDPVLIA---LGGAIRRSRRARGISQEELAHRSAIDRSYMSSIERGGQNPGIVSIARI 73

Query: 70 AHTLDTPLWKLL 81
          A  ++  + +L+
Sbjct: 74 AKAMEMSMTELM 85


>gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2]
          Length = 116

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   LTQ+++  R   + ++I ++E G+ +++++ ++ LA+ L + +  LL
Sbjct: 6  LGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGERSLSLETLVKLANELGSTVDYLL 65


>gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 177

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           N  + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T
Sbjct: 4  GNKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGT 56


>gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
          Length = 194

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 18 GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 76


>gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 67

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
          MI     + +RK    +QKE+   TG +QS+ISELE G K+  +I  +  +A  L+  + 
Sbjct: 1  MIPGKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKTNPSIKVIKRIAEVLEIDIC 60

Query: 79 KLL 81
          +L+
Sbjct: 61 QLV 63


>gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO]
 gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae
          TMO]
          Length = 177

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R    LTQ+E+  RT  ++S+IS+LE+ K+++ +D +  +   L T L
Sbjct: 4  GGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDL 58


>gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 108

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    R +R+   LTQ  +    G A   IS +E+ + + ++D MI +A  L  PL  
Sbjct: 4  ELFGARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLPLEA 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1]
 gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1]
          Length = 148

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +RK   LTQ+E+  +    +  IS  E+G  T ++D +  LA  LD  +  
Sbjct: 1  MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|110677426|ref|YP_680433.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
 gi|109453542|gb|ABG29747.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
          Length = 215

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 10 HLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
               +  ER            R  RK+  +T  E+   T  +   +S++E G ++ ++ 
Sbjct: 14 QDPHGVREEREKVLEVAIGREVRAYRKQKGMTVAELSRLTDLSIGMLSKIENGNTSPSLT 73

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  LA+ L  PL    K
Sbjct: 74 TLQALANALSVPLTAFFK 91


>gi|119382887|ref|YP_913943.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119386082|ref|YP_917137.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119372654|gb|ABL68247.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
 gi|119376677|gb|ABL71441.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 78

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 37/71 (52%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            + +R R     N R +R+E  L+Q+E+ +R    ++++  LE  ++   +D +  LA 
Sbjct: 4  DSSGMRLRERVARNLRRLRQEKSLSQEELADRADINRNYVGMLEREENAATVDMLEKLAA 63

Query: 72 TLDTPLWKLLK 82
           L+    +LL+
Sbjct: 64 VLEVDPVELLR 74


>gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM
          519]
 gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii]
          Length = 179

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     + +R    LTQ+E+  R    + +IS+LE   ++ +I  ++ +   L T L  
Sbjct: 1  MVIGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLTSPSIATLVDILEALGTDLKD 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12]
 gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12]
 gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12]
          Length = 184

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +NIR    L  KE+ ++   + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 8  GKTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFKFF 66


>gi|170760678|ref|YP_001786283.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407667|gb|ACA56078.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 186

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + R++  +  +E  N +G + S IS++E G++  ++  + ++A  L+ PL+ L 
Sbjct: 7  GQTVLSYRRKNGMNIREFANYSGISTSLISQIERGEANPSLSVLELIAKALNVPLFTLF 65


>gi|118587192|ref|ZP_01544620.1| transcriptional regulator, MerR family [Oenococcus oeni ATCC
          BAA-1163]
 gi|118432334|gb|EAV39072.1| transcriptional regulator, MerR family [Oenococcus oeni ATCC
          BAA-1163]
          Length = 191

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                N R++ KLT +E+  ++G + S IS++E G++  ++  + I+A+TL+ PL+ L 
Sbjct: 12 LGKTLLNYRQQNKLTIRELAVQSGISASLISQIERGRANPSLSVLTIIANTLNVPLYTLF 71


>gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937]
 gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937]
          Length = 81

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R+   L+Q+ + + TG  +S +  +E G+  + + N++ +A  L+  L +L
Sbjct: 16 LLGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQL 75

Query: 81 L 81
           
Sbjct: 76 F 76


>gi|303231632|ref|ZP_07318355.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
 gi|302513581|gb|EFL55600.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
          Length = 90

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N    R EA +TQ ++   TG  QS IS++E G    ++  +  +AH     L
Sbjct: 32 ENIVKARIEAHMTQTQLSEITGITQSDISKIENGNGNPSVKTLKKIAHAFGKKL 85


>gi|290476537|ref|YP_003469442.1| MunI regulatory protein (fragment) [Xenorhabdus bovienii SS-2004]
 gi|289175875|emb|CBJ82678.1| MunI regulatory protein (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 56

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 26/47 (55%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+   ++ G  +++IS +E G     ++ + ++A+ L   L +L 
Sbjct: 1  MSQEAFADKCGLDRTYISGIERGIRNPTLEIIYVIANGLQIELNELF 47


>gi|228921104|ref|ZP_04084438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229190489|ref|ZP_04317487.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228592997|gb|EEK50818.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228838550|gb|EEM83857.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 186

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E     G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFAEYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|323703832|ref|ZP_08115468.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
 gi|323531189|gb|EGB21092.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
          Length = 70

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R++  LTQ ++  ++G +Q++I ELE GK   ++  +  LA  L   + KLL
Sbjct: 2  KLQKYREDQGLTQAKLAEKSGVSQAYICELEQGKKQPSVFIVKKLAKALGISVSKLL 58


>gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded
          beta-helix domain [Roseburia intestinalis M50/1]
          Length = 179

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LTQ+E+ +R+   + +IS+LE  +++ +I  ++ +   L T   +   
Sbjct: 4  GKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAEFFT 63


>gi|332291138|ref|YP_004429747.1| transcriptional regulator, XRE family [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332169224|gb|AEE18479.1| transcriptional regulator, XRE family [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 490

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    R IR E  L+   +   TG ++S+++E+E GK     D ++ L+  LD P  
Sbjct: 7  KLIFGLKLRQIRTEKNLSLFGLSKLTGLSKSYLNEIENGKKYPKPDKIVTLSEKLDIPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220]
          Length = 180

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 177

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T + +  
Sbjct: 4  GAKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLLDILQCLGTSVGEFF 62


>gi|300715480|ref|YP_003740283.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061316|emb|CAX58425.1| transcriptional regulator [Erwinia billingiae Eb661]
          Length = 182

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R  A L+  E+  R G A+S +S+LE+     +I+ +  L   L+ P  KL
Sbjct: 7  VIAASLARERTRAGLSLAEVARRAGIAKSTLSQLESANGNPSIETLWALCGALNIPFAKL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|257793053|ref|YP_003186451.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479745|gb|ACV60062.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 201

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I  NN R +R     +  E+  R+G A+  IS+LE+G     +  +  LA  L  P   
Sbjct: 17 KIVSNNLRALRLARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSD 76

Query: 80 LLK 82
          L++
Sbjct: 77 LIQ 79


>gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 204

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+  E+  R G +   +S++E  K+  ++  +  L   L+ PL  LL
Sbjct: 19 VGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALL 78

Query: 82 K 82
          +
Sbjct: 79 E 79


>gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus
          JCSC5402]
 gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus
          JCSC5402]
          Length = 180

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +++R++  LTQ+E+  RT  ++ +IS+LE    + +++    +   L +      
Sbjct: 4  GKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLCSPSMETFFNILEVLGSKPKDFF 62


>gi|218281836|ref|ZP_03488175.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989]
 gi|218217125|gb|EEC90663.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989]
          Length = 104

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R+   LTQ+E+      + + +S +E G     +D  I +A+ LD     
Sbjct: 4  KAVGQRIKAAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC
          2665]
 gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC
          2665]
 gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC
          2665]
          Length = 488

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   D+   + +      R++RK+A LT  ++  RTG + S +S +E  +    +  +  
Sbjct: 5  PLPEDSATVDAVALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQR 64

Query: 69 LAHTLDTPLWKLLK 82
          +A  L  P+  LL 
Sbjct: 65 IAEVLGVPVEDLLT 78


>gi|126733718|ref|ZP_01749465.1| putative transcriptional regulator [Roseobacter sp. CCS2]
 gi|126716584|gb|EBA13448.1| putative transcriptional regulator [Roseobacter sp. CCS2]
          Length = 75

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R E   +Q+ + +  G  ++++S +E  +  I++DN+  LA  +     
Sbjct: 10 RDVLARNLRLYRAEKGWSQERLAHEAGLNRTYLSAVERSEQNISVDNIARLASAMRVEAH 69

Query: 79 KLL 81
           LL
Sbjct: 70 TLL 72


>gi|20803997|emb|CAD31574.1| PUTATIVE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti
          R7A]
          Length = 70

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +R +  LTQ+E+  R   +  ++  +E  + + ++  +  LA   D    +
Sbjct: 5  EVMAINMRRLRHDQDLTQEELAARAELSMRYVGSIERARVSASVSVLGRLAKAFDVDPCE 64

Query: 80 LLKP 83
          L++P
Sbjct: 65 LIRP 68


>gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1]
 gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1]
          Length = 140

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N ++ RK   LTQ+++  R G ++  +++ ETG ST ++ N   LA  LD  L  L
Sbjct: 1  MIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDAL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|227878168|ref|ZP_03996142.1| transcriptional regulator [Lactobacillus crispatus JV-V01]
 gi|256850532|ref|ZP_05555959.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047426|ref|ZP_06020382.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US]
 gi|227862199|gb|EEJ69744.1| transcriptional regulator [Lactobacillus crispatus JV-V01]
 gi|256712737|gb|EEU27731.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|260572196|gb|EEX28760.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US]
          Length = 65

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            +  R    LTQ+++  +   ++  IS +E G    +I+  I +   LD  L  L  P
Sbjct: 5  KMKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSINLCIKICQALDKTLDDLFWP 63


>gi|19703890|ref|NP_603452.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|19714054|gb|AAL94751.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
          Length = 199

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 40/77 (51%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K++     +  + + +      +NIRK  KL  K++  + G + S +S++E G +  +++
Sbjct: 4  KKELLRKDNIKMNKEINVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLN 63

Query: 65 NMIILAHTLDTPLWKLL 81
           +  +A  L+ PL+K  
Sbjct: 64 TIKSIAQVLEVPLFKFF 80


>gi|3318590|dbj|BAA31573.1| A2-5a orf21; hypothetical protein [Bacillus sp.]
          Length = 184

 Score = 58.1 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + IRK+ KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L      L
Sbjct: 7  ILARNLKAIRKKEKLSLEKVSELSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFTSL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 184

 Score = 57.7 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +RKE  ++Q+EI  +   ++  IS+ E GK+  +I++++++A+  D  L  L+K
Sbjct: 5  RRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKTYPDINSLLLMANYFDVSLDHLIK 63


>gi|70729981|ref|YP_259721.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68344280|gb|AAY91886.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 187

 Score = 57.7 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R +R  A L+Q  +  ++  ++  +  +E G+  +++  +  +A  LD     L++
Sbjct: 18 NVRRLRNAAGLSQSALAEKSNVSRRMLVAIEAGEKNVSLGTLDRVAEALDVAFSDLIQ 75


>gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991]
 gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991]
          Length = 110

 Score = 57.7 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +I+R+ ++F    + +RK+  L+Q  +    G     IS  E GKS  N+  +  L   
Sbjct: 4  KSIIRKIIMFNEKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEA 63

Query: 73 LDTPL 77
          LD PL
Sbjct: 64 LDVPL 68


>gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 187

 Score = 57.7 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R IR  A L+  +  + TG +++ + ++E G+S+  I  +  +A     PL  L
Sbjct: 5  IIGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTAL 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320]
          Length = 186

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   +    RK+A L+  EI  R G A+S +S+LE G+   +I+ +  +   L+ P  +
Sbjct: 9  EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQ 68

Query: 80 LL 81
          L+
Sbjct: 69 LI 70


>gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
 gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
          Length = 207

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P   R       A   E +      R++RK    T ++   + G A+S +S++E G+ +
Sbjct: 6  LPPLLRVTRETGGAAAPEPLDLGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQMS 65

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
             D +  LA  L+  + +L  P
Sbjct: 66 PTYDALKKLAQGLEISVPQLFTP 88


>gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC
          17978]
 gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
 gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC
          17978]
 gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter
          baumannii TCDC-AB0715]
 gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
          Length = 183

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 11 VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64


>gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum
          thermopropionicum SI]
          Length = 255

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+E   T +++  RT  + S++SE+E G    ++  +  LA  L+    +L+K
Sbjct: 5  GEQIRALREERGYTLQDLARRTNLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKAQLIK 64



 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   +  R +R E  ++ +E+   +G + S++SE+E G     +  +  +A  L  P   
Sbjct: 72  LSLGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTVYPALTTLKRIAAGLSVPPAA 131

Query: 80  LL 81
           L+
Sbjct: 132 LI 133



 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 8   EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
                 A++          R +R+E  LTQ ++ +  G     I ++E GK   ++  + 
Sbjct: 125 LSVPPAALIGHETTLGCKLRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQPSLKTLE 184

Query: 68  ILAHTLDTPL 77
            +A  +    
Sbjct: 185 KIAEVMGVTP 194


>gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum
          WAL-14163]
 gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum
          WAL-14163]
          Length = 183

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +I   N R +R+E KL+  E+   +G ++S ++++E G     I  +  +++ +  P
Sbjct: 3  PMNLIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVP 62

Query: 77 LWKL-LKP 83
             L ++P
Sbjct: 63 FDALTVRP 70


>gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 210

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+E+ ++ G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 38 VGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVNISLAKLDAIAIVLGV 91


>gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
 gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
          Length = 187

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   +    RK+A L+  EI  R G A+S +S+LE G+   +I+ +  +   L+ P  +
Sbjct: 10 EIISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIPFSQ 69

Query: 80 LL 81
          L+
Sbjct: 70 LI 71


>gi|307155287|ref|YP_003890671.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306985515|gb|ADN17396.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 82

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R +  L+Q+E+  R+   +++IS +E G    +   ++ LA  L   L +LL
Sbjct: 12 LGSQVKRHRTKLGLSQEELGFRSNLDRTYISGVERGVRNPSFTALVSLASGLGLTLSELL 71


>gi|167749015|ref|ZP_02421142.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662]
 gi|317472587|ref|ZP_07931905.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp.
          3_2_56FAA]
 gi|167651637|gb|EDR95766.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662]
 gi|316899921|gb|EFV21917.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp.
          3_2_56FAA]
          Length = 114

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R++  +TQ+ +  +   + S IS +ET K+ +++  ++ +++ L   +  
Sbjct: 6  EALGRKIKEVRRKQNMTQEYLAEKVDLSVSHISNIETAKTKVSLPTLVEISNALGVSVDY 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|315658589|ref|ZP_07911460.1| cro/CI family transcriptional regulator [Staphylococcus
          lugdunensis M23590]
 gi|315496378|gb|EFU84702.1| cro/CI family transcriptional regulator [Staphylococcus
          lugdunensis M23590]
          Length = 179

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+R    LTQ+E+  RT   + +IS++E+  ++ +++  + +   L T      +
Sbjct: 4  GMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDFFQ 63


>gi|296327461|ref|ZP_06870007.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
 gi|296155287|gb|EFG96058.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
          Length = 205

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 40/77 (51%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K++     +  + + +      +NIRK  KL  K++  + G + S +S++E G +  +++
Sbjct: 10 KKELLRKDNIKMNKEINVGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLN 69

Query: 65 NMIILAHTLDTPLWKLL 81
           +  +A  L+ PL+K  
Sbjct: 70 TIKSIAQVLEVPLFKFF 86


>gi|289551090|ref|YP_003471994.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis
          HKU09-01]
 gi|289180622|gb|ADC87867.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis
          HKU09-01]
          Length = 179

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N+R    LTQ+E+  RT   + +IS++E+  ++ +++  + +   L T      +
Sbjct: 4  GMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSDFFQ 63


>gi|206889754|ref|YP_002249639.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741692|gb|ACI20749.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 419

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           DE H+        +   N  R IR    ++QKE+  +      +IS++E  +   +I + 
Sbjct: 232 DEIHIKATEQTLVLDIGNKLREIRISRNISQKELAEKVNLTPGFISQMENNQIAPSIVSF 291

Query: 67  IILAHTLDTPLWKLL 81
           + +   L     ++L
Sbjct: 292 MQICDALGVKASEIL 306


>gi|302875139|ref|YP_003843772.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307690235|ref|ZP_07632681.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302577996|gb|ADL52008.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 182

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N + IR+E  LT  ++   TG ++S +SE+E    +  I  +  +   ++ PL +
Sbjct: 6  ETISRNIKRIRQERNLTLDDLAILTGVSKSMLSEIERCTKSPTISVLEKICDGINVPLAQ 65

Query: 80 L 80
          L
Sbjct: 66 L 66


>gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24]
 gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171]
 gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24]
 gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171]
          Length = 289

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R IRK   L+Q E+ +  G  QS+IS +E G    +ID ++I+A+ L+ PL  LL+
Sbjct: 7  GKAIRRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65


>gi|227519556|ref|ZP_03949605.1| phage-like protein [Enterococcus faecalis TX0104]
 gi|257090840|ref|ZP_05585201.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|312902475|ref|ZP_07761681.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|227073005|gb|EEI10968.1| phage-like protein [Enterococcus faecalis TX0104]
 gi|256999652|gb|EEU86172.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|310634145|gb|EFQ17428.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315579716|gb|EFU91907.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 184

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +     +  R E K+TQ ++  ++G +  +   +E GK++ +I+ +  +A  L   L
Sbjct: 5  DSKVVGTRMKQKRLEKKMTQVDVATKSGISSKYYGSIENGKNSPSIEKLSAIAKALGCSL 64

Query: 78 WKLL 81
            LL
Sbjct: 65 HYLL 68


>gi|153008632|ref|YP_001369847.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151560520|gb|ABS14018.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 96

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               N R IR    ++Q E+   +   ++++  +E GK    +  +  LA  L+
Sbjct: 10 EQLAFNLRRIRVANGISQDELALMSNVERAYVGHIERGKKNPTVITLDKLATALN 64


>gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
          2926]
 gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
          2926]
          Length = 179

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + +R+   LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +  +L T L +
Sbjct: 1  MIIGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLTSPSIATLVDILESLGTNLKE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|312198964|ref|YP_004019025.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311230300|gb|ADP83155.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 221

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER+I     R +R+ A LT  E+  R+G ++  +S++E   ++ ++  +  LA  LD P+
Sbjct: 33 ERLI-AAQVRRLRQGAGLTLAELATRSGISKPMLSKIENANTSCSLTTLARLADALDVPV 91

Query: 78 WKLLK 82
            L +
Sbjct: 92 TALFR 96


>gi|229144991|ref|ZP_04273387.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST24]
 gi|228638513|gb|EEK94947.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-ST24]
          Length = 192

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71


>gi|228958663|ref|ZP_04120381.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229109833|ref|ZP_04239418.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15]
 gi|229127789|ref|ZP_04256776.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4]
 gi|229153781|ref|ZP_04281918.1| Transcriptional regulator, XRE [Bacillus cereus m1550]
 gi|228629684|gb|EEK86375.1| Transcriptional regulator, XRE [Bacillus cereus m1550]
 gi|228655667|gb|EEL11518.1| Transcriptional regulator, XRE [Bacillus cereus BDRD-Cer4]
 gi|228673678|gb|EEL28937.1| Transcriptional regulator, XRE [Bacillus cereus Rock1-15]
 gi|228801084|gb|EEM47983.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 192

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71


>gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator
          MP104C]
 gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator
          MP104C]
          Length = 245

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R+ A ++QK++       +S IS++E+G ++ +++ ++ +  ++   L +  
Sbjct: 4  GPRIARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAEFF 62


>gi|126700771|ref|YP_001089668.1| putative phage DNA-binding protein [Clostridium difficile 630]
 gi|115252208|emb|CAJ70047.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 253

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M    N + IRK+ +LTQ ++   +G +++ +   E  K   +ID +  LA  L   
Sbjct: 1  MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 57


>gi|303241950|ref|ZP_07328443.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590505|gb|EFL60260.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 64

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RK+  ++Q E+   +  +  +ISELETGK   +++    L+  L   + +L
Sbjct: 1  MFGEKLKQLRKQRNISQHELSKISNVSYGFISELETGKKRPSLETAEKLSRALGVAITEL 60

Query: 81 L 81
          +
Sbjct: 61 I 61


>gi|296122389|ref|YP_003630167.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
 gi|296014729|gb|ADG67968.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
          Length = 82

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N +  R+ A ++Q+++   TG + + +   ETG+ + N+  ++ LA  L  P   
Sbjct: 8  EVFSRNLKAARQRAGMSQRKLAEITGCSFASVCRWETGRESPNLTTIVKLAEGLQVPPEA 67

Query: 80 LLK 82
          LL 
Sbjct: 68 LLT 70


>gi|229167238|ref|ZP_04294979.1| Transcriptional regulator, XRE [Bacillus cereus AH621]
 gi|228616276|gb|EEK73360.1| Transcriptional regulator, XRE [Bacillus cereus AH621]
          Length = 205

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISPSLISQIERGHANPSLNVLELIAKALNVPLFTLF 84


>gi|291296678|ref|YP_003508076.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290471637|gb|ADD29056.1| transcriptional regulator, XRE family [Meiothermus ruber DSM
          1279]
          Length = 130

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R +     K++  ++G +  ++S+LE G++  ++D +  LA + +  +  
Sbjct: 1  MTLAERLRELRTQQGWRLKDLSEKSGLSVPYLSDLERGRTNPSLDTLQTLATSYNLSVND 60

Query: 80 LLKP 83
          LL P
Sbjct: 61 LLAP 64


>gi|206560876|ref|YP_002231641.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198036918|emb|CAR52822.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 109

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          KR  P +S       +      +  R  A+ +Q+ +       +++IS +E G +  +I+
Sbjct: 4  KRSSPSVSRPAPIS-IALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIE 62

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  + ++L+  L +L  P
Sbjct: 63 TLANICYSLNVTLAELFGP 81


>gi|206971652|ref|ZP_03232602.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228952730|ref|ZP_04114804.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229069917|ref|ZP_04203198.1| Transcriptional regulator, XRE [Bacillus cereus F65185]
 gi|229079584|ref|ZP_04212121.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-2]
 gi|229178751|ref|ZP_04306115.1| Transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|206733637|gb|EDZ50809.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228604909|gb|EEK62366.1| Transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|228703753|gb|EEL56202.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-2]
 gi|228713208|gb|EEL65102.1| Transcriptional regulator, XRE [Bacillus cereus F65185]
 gi|228807006|gb|EEM53551.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 186

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC
          BAA-613]
          Length = 177

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T + +  
Sbjct: 4  GSKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEFF 62


>gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC
          29799]
 gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC
          29799]
          Length = 114

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               N+RK   L+Q  +  R   +  +IS +E G   +++  ++ +A  LD P   LL
Sbjct: 10 GVRIHNLRKLRGLSQAALAERAELSTPYISHIERGMKLLSLPALLRIAEALDIPPGTLL 68


>gi|319652413|ref|ZP_08006529.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2]
 gi|317395875|gb|EFV76597.1| hypothetical protein HMPREF1013_03142 [Bacillus sp. 2_A_57_CT2]
          Length = 185

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N +  R+  KL+ +++   TG +++ I ++E G+S+  I  +  +A+ L      
Sbjct: 6  LILAKNLKAFRENKKLSLEKVAELTGVSKTMIGQIERGESSPTITTIWKIANGLKISFTS 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|262372962|ref|ZP_06066241.1| LexA repressor [Acinetobacter junii SH205]
 gi|262312987|gb|EEY94072.1| LexA repressor [Acinetobacter junii SH205]
          Length = 224

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +N ++IRK  K+TQKE+  ++G  QS IS+LETG +  +  +++ LA+ L     +L
Sbjct: 8  LGDNLKSIRKAKKMTQKELAQKSGVKQSVISDLETGNAK-STGSILELANALGVTAEEL 65


>gi|229085306|ref|ZP_04217548.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-44]
 gi|228698025|gb|EEL50768.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-44]
          Length = 186

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G++  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNDMTIREFADYAGISTSLISQIERGQANPSLSVLELIAKALNVPLFTLF 65


>gi|229199676|ref|ZP_04326321.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293]
 gi|228583822|gb|EEK41995.1| hypothetical protein bcere0001_51590 [Bacillus cereus m1293]
          Length = 61

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    +RK+  +TQ+E+  + G  ++++S LE GK   ++D  + ++  L + + K+ K
Sbjct: 2  NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60


>gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
          Length = 148

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +RK   LTQ+E+  +    +  IS  E+G  T ++D +  LA  LD  +  
Sbjct: 1  MSFPQRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900]
          Length = 183

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +R G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 11 VGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64


>gi|254976735|ref|ZP_05273207.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-66c26]
 gi|255094119|ref|ZP_05323597.1| putative phage DNA-binding protein [Clostridium difficile CIP
          107932]
 gi|255315870|ref|ZP_05357453.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-76w55]
 gi|255518531|ref|ZP_05386207.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-97b34]
 gi|255651650|ref|ZP_05398552.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-37x79]
          Length = 254

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M    N + IRK+ +LTQ ++   +G +++ +   E  K   +ID +  LA  L   
Sbjct: 1  MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIE 57


>gi|163756345|ref|ZP_02163459.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1]
 gi|161323697|gb|EDP95032.1| hypothetical protein KAOT1_01814 [Kordia algicida OT-1]
          Length = 492

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + IR +  L+   +   TG ++S+++E+E GK     D ++IL+  LD P  
Sbjct: 7  KLIFGLKLKQIRTDKNLSLFGLSKITGLSKSYLNEIEKGKKYPKPDKIVILSEKLDVPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|16762390|ref|NP_458007.1| hypothetical protein STY3832 [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|29143878|ref|NP_807220.1| hypothetical protein t3577 [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|25512349|pir||AD0945 probable DNA-binding protein STY3832 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504694|emb|CAD09582.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29139514|gb|AAO71080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
          Length = 188

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 13 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 72

Query: 81 LKP 83
          L+P
Sbjct: 73 LEP 75


>gi|289623964|ref|ZP_06456918.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651241|ref|ZP_06482584.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298487604|ref|ZP_07005645.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
 gi|298157696|gb|EFH98775.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
 gi|330867797|gb|EGH02506.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330953968|gb|EGH54228.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae Cit 7]
          Length = 189

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +            N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVAFSDLIQ 75


>gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 190

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R++  ++  E+  R G  ++ +S+LE G+    I+ +  LA  L  PL  LL
Sbjct: 17 VGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIETLDALAIALRIPLTDLL 76


>gi|257438372|ref|ZP_05614127.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257199203|gb|EEU97487.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 119

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RK A LTQ+++  R   +   I+ +E G    + + ++ +A  L   L  
Sbjct: 8  KVLGEKVRKERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARILPVSLDA 67

Query: 80 LLKP 83
          L+ P
Sbjct: 68 LITP 71


>gi|217959909|ref|YP_002338465.1| DNA-binding protein [Bacillus cereus AH187]
 gi|229139101|ref|ZP_04267678.1| transcriptional regulator, possible MerR [Bacillus cereus
          BDRD-ST26]
 gi|217064097|gb|ACJ78347.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228644456|gb|EEL00711.1| transcriptional regulator, possible MerR [Bacillus cereus
          BDRD-ST26]
          Length = 152

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor
          [Rubrobacter xylanophilus DSM 9941]
          Length = 203

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +R+E  LT + +  R+G +++ IS++E G+    +     LA  L   L +L
Sbjct: 17 VGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGEKVPTLVVAARLAEGLGVSLSEL 75


>gi|83719403|ref|YP_440667.1| XRE family transcriptional regulator [Burkholderia thailandensis
           E264]
 gi|83653228|gb|ABC37291.1| possible transcriptional regulator, XRE family [Burkholderia
           thailandensis E264]
          Length = 128

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           +  P          +      +  R EA+ +Q+ +       +++IS +E G +  +++ 
Sbjct: 23  KRSPSPPGRPAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVET 82

Query: 66  MIILAHTLDTPLWKLLKP 83
           +  + ++L+  L +L  P
Sbjct: 83  LANICYSLNITLAELFAP 100


>gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 195

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            L +R+      R++R +  L+ + +    G ++S IS +E G+S+     +  LA  L
Sbjct: 6  PSLNDRI--AQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGESSPTAVLLEKLATGL 63

Query: 74 DTPLWKLLK 82
            PL  L +
Sbjct: 64 GVPLASLFE 72


>gi|312961727|ref|ZP_07776225.1| transcriptional regulator, XRE family with cupin sensor domain
          [Pseudomonas fluorescens WH6]
 gi|311283986|gb|EFQ62569.1| transcriptional regulator, XRE family with cupin sensor domain
          [Pseudomonas fluorescens WH6]
          Length = 191

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  +A  L+     L+
Sbjct: 19 VSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLSTLDRVAEALEVAFSDLI 78

Query: 82 K 82
          +
Sbjct: 79 Q 79


>gi|302337830|ref|YP_003803036.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301635015|gb|ADK80442.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 84

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER+I   N R  R    LTQ  +  + G +  ++ ++E GK   + + +  L   L    
Sbjct: 6  ERLI--ANLREARYTLNLTQMGLAEKAGISIGFVGDIEAGKKFPSANTLQKLCDALQLEP 63

Query: 78 WKLLKP 83
           +L  P
Sbjct: 64 HELFLP 69


>gi|284050068|ref|ZP_06380278.1| DNA-binding protein [Arthrospira platensis str. Paraca]
 gi|291566507|dbj|BAI88779.1| putative XRE family transcriptional regulator [Arthrospira
          platensis NIES-39]
          Length = 79

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                    R  AK++Q+E+ +R G  ++++S++E G  +  +  +  ++ +L+T    
Sbjct: 6  KALGQVLIKYRTLAKISQEELADRAGIHRTYVSQIERGLKSPTLSVLFRISQSLNTTASV 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|225569760|ref|ZP_03778785.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM
          15053]
 gi|225161230|gb|EEG73849.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM
          15053]
          Length = 160

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 39/66 (59%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E      N ++ R++ + TQ+ +  +   ++  IS+ ETGK   ++DN+++L++  D 
Sbjct: 1  MKEIKTLGENLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDV 60

Query: 76 PLWKLL 81
           L +L+
Sbjct: 61 SLDELM 66


>gi|78043621|ref|YP_360682.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995736|gb|ABB14635.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 127

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R++ +L+++E     G +  ++ +LE G+  +++  ++ +A  L   L  
Sbjct: 6  KAIGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLPVLVNIAQCLHVSLDY 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|56698137|ref|YP_168509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56679874|gb|AAV96540.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 189

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            R +R  A L+  ++   TG +++ + ++E G+S+  I  +  +A     PL  LL P
Sbjct: 9  KLREVRAAAGLSLAKVAELTGVSKAMLGQIERGESSPTIATLWKIAKGFQMPLSALLGP 67


>gi|13990971|dbj|BAB47254.1| y4dJ [Agrobacterium tumefaciens]
          Length = 70

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R IR   KLTQ+E+ +RTG +   I  +E  + +  +  +  +AH L     +L+ 
Sbjct: 4  NLRRIRHVKKLTQEELAHRTGLSVRHIGAIERAEMSATVTVLGQIAHALSVEPAELVT 61


>gi|298209023|ref|YP_003717202.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus
          HTCC2559]
 gi|83848950|gb|EAP86819.1| hypothetical protein CA2559_12303 [Croceibacter atlanticus
          HTCC2559]
          Length = 491

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + IR +  L+   +   +G ++S+++E+E GK     D + IL+  LD P  
Sbjct: 7  KLIFGLKLKQIRTDKNLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSKKLDVPFD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
           14365]
          Length = 198

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +RK   LT K++  RT  + S +S++E  +S+ ++ ++  +A  LD P+ +L 
Sbjct: 137 GRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASVSSLFKVATALDVPITELF 195


>gi|78043349|ref|YP_359532.1| MerR family transcriptional regulator [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995464|gb|ABB14363.1| transcriptional regulator, MerR family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 274

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R+      + +R++  LT +E+   TG + S++S +E+G+  ++I  +  LA   +  L
Sbjct: 94  RIAVGQKLKALREKKGLTLEEVSQGTGVSVSYLSRIESGQVNVSIATLQKLATFYEKNL 152


>gi|218897358|ref|YP_002445769.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228901004|ref|ZP_04065216.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222]
 gi|218542293|gb|ACK94687.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228858635|gb|EEN03083.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222]
          Length = 186

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662]
 gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662]
          Length = 180

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N + +R++ KL+ + +   +G ++S ++++E G     I  +  +++ +  P   
Sbjct: 3  LIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDA 62

Query: 80 L-LKP 83
          L ++P
Sbjct: 63 LTVRP 67


>gi|124262737|ref|YP_001023207.1| subunit S of type I restriction-modification system [Methylibium
          petroleiphilum PM1]
 gi|124266393|ref|YP_001020397.1| subunit S of type I restriction-modification system [Methylibium
          petroleiphilum PM1]
 gi|124259168|gb|ABM94162.1| subunit S of type I restriction-modification system [Methylibium
          petroleiphilum PM1]
 gi|124261983|gb|ABM96972.1| subunit S of type I restriction-modification system [Methylibium
          petroleiphilum PM1]
          Length = 77

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R     + R  R    L+Q+ + +     ++++  +E  +  +++DN+  LA  L+ 
Sbjct: 9  ESARARLARHLRGERALRGLSQEALADLALLHRTYVGSIERCERNVSLDNVERLARALNV 68

Query: 76 PLWKLL 81
           +  LL
Sbjct: 69 DIADLL 74


>gi|313116082|ref|ZP_07801505.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310621588|gb|EFQ05120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 120

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RK A LTQ+++  R   +   I+ +E G    + + ++ +A  L   L  
Sbjct: 9  KVLGEKVRTERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARVLPVSLDA 68

Query: 80 LLKP 83
          L+ P
Sbjct: 69 LITP 72


>gi|307298381|ref|ZP_07578185.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306916467|gb|EFN46850.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 135

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 35/65 (53%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
            S AI R +    +   + RKE  L+QK++    GF Q ++S +E G+  ++++ ++ +
Sbjct: 23 EDSLAIGRIKGQVASQLMSYRKERGLSQKQLGELLGFKQPYVSNIERGEENLSLETLVKI 82

Query: 70 AHTLD 74
          +  L 
Sbjct: 83 SACLK 87


>gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 182

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +R +M   N  + IR    LTQ E+  R+   + +IS++E   ++ ++  +I +   L T
Sbjct: 1  MRYKMDIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLTSPSVTTLIDILEALGT 60

Query: 76 PLWKLLK 82
             +  K
Sbjct: 61 SPIEFFK 67


>gi|289432135|ref|YP_003462008.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288945855|gb|ADC73552.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 133

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    R +R+  KL+ +E+  +TG + S+I+++E GK      + +  LA   + P+ +L
Sbjct: 4  FGEYLRKLREAQKLSLREMAAKTGVSVSYITQIENGKRKAPGPEVLKKLAPAYNVPVREL 63

Query: 81 LK 82
          LK
Sbjct: 64 LK 65


>gi|228965379|ref|ZP_04126471.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228794369|gb|EEM41883.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 186

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656]
 gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656]
 gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 179

 Score = 57.7 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R +  LTQ+E+ +R    + +IS+LE  +++ ++  ++ +   L     +   
Sbjct: 4  GHRMKELRIQYGLTQQELADRAELTKGFISQLERNQNSPSVGTLLDIIQCLGMTPAEFFT 63


>gi|296840682|ref|ZP_06863200.2| transcriptional regulator, Cro/CI family [Neisseria polysaccharea
          ATCC 43768]
 gi|296840230|gb|EFH24168.1| transcriptional regulator, Cro/CI family [Neisseria polysaccharea
          ATCC 43768]
          Length = 68

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +RK   L+Q++   +    +++++ +E GK  +++ NM  + + L T   +  +
Sbjct: 7  GARIRELRKAQNLSQEKFALKAEIDRTYLAGIEQGKRNLSMKNMEKIINALGTTFHQFFE 66


>gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 218

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R+    +Q+E+  R G ++  IS+ E  +S+ + DN+I LA      L +L+
Sbjct: 6  AQRLAELRRTKGYSQEELAQRLGLSRQAISKWERAESSPDTDNLIALARLYSVSLDELV 64


>gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans
          PW2]
 gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans
          PW2]
          Length = 211

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           N R IRK   LTQ ++  R G A++ +++ E G S   I  +  LA TL  P
Sbjct: 5  ENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVP 57


>gi|330810189|ref|YP_004354651.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327378297|gb|AEA69647.1| putative Transcription factor, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 187

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R  A+L+Q  +   +G ++  +  +E G+  +++  +  +A  LD     L+
Sbjct: 15 VSQNVRRLRHAAELSQTALAELSGVSRRMLVAIEAGEKNVSLTTLDRVAEALDVAFSDLI 74

Query: 82 K 82
          +
Sbjct: 75 Q 75


>gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp.
          3_2_56FAA]
 gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp.
          3_2_56FAA]
          Length = 180

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N + +R++ KL+ + +   +G ++S ++++E G     I  +  +++ +  P   
Sbjct: 3  LIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDA 62

Query: 80 L-LKP 83
          L ++P
Sbjct: 63 LTVRP 67


>gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM
          12042]
 gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM
          12042]
          Length = 180

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R+E KL+ +E+   +  ++S I+++E G+    +  +  +++ L  P   L
Sbjct: 4  IVAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGNPTLSTLWKISNGLKVPFDSL 63

Query: 81 -LKP 83
           ++P
Sbjct: 64 TVRP 67


>gi|110677441|ref|YP_680448.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
 gi|109453557|gb|ABG29762.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
          Length = 190

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E      + R +RK   LT  ++  R G +  W+S++E  KS  +I ++  +A  L+ 
Sbjct: 6  PDEPQTLGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEV 65

Query: 76 PLWKLLK 82
           +  L +
Sbjct: 66 SISMLFR 72


>gi|66046479|ref|YP_236320.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae B728a]
 gi|63257186|gb|AAY38282.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a]
          Length = 189

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +            N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVAFSDLIQ 75


>gi|72161782|ref|YP_289439.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71915514|gb|AAZ55416.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 481

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              + + F    R++R+   +T  E+  R G A S +S LE GK    +  +  LA  L
Sbjct: 5  PSDLDLVTFGQRLRHLRRARNMTLAELGERVGRAPSQLSLLENGKREPKLSLLTALAKAL 64

Query: 74 DTPLWKLL 81
          D  + +LL
Sbjct: 65 DVSVEELL 72


>gi|87308573|ref|ZP_01090713.1| restriction-modification system regulatory protein, putative
          [Blastopirellula marina DSM 3645]
 gi|87288665|gb|EAQ80559.1| restriction-modification system regulatory protein, putative
          [Blastopirellula marina DSM 3645]
          Length = 73

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E   +Q+   +     ++++  +E G+  + + N+  +A +LD  + +L+
Sbjct: 11 FGERVRELRAERGYSQEAFAHICELDRTYVGGIERGERNLALRNIERIAESLDISISELM 70

Query: 82 K 82
          K
Sbjct: 71 K 71


>gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans
          str. M302278PT]
          Length = 228

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             + R +RKE  L+Q+ + +  G+ +QS I   E G    ++ ++  +A TL      L
Sbjct: 4  LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVSFVDL 63

Query: 81 L 81
          +
Sbjct: 64 V 64


>gi|196040012|ref|ZP_03107315.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196029271|gb|EDX67875.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 186

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTILSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
 gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2]
          Length = 172

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 35/55 (63%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +++RKE KLT KE+  +T  + S++S++E GKS++ ++++  +A  L+   
Sbjct: 7  GVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADALNVDP 61


>gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 211

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 1  MPRRKRDEPHLSDAILR-----ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55
          M +    +    DA +               R++R+   ++ + +    G + S +S++E
Sbjct: 1  MTQPPLADAVDPDAAVPGAPAEPAASVGARIRDLRQARGISARALAATLGISPSAVSQIE 60

Query: 56 TGKSTINIDNMIILAHTLDTPLWKLLKP 83
           G    ++  +I +   L  PL     P
Sbjct: 61 RGVMQPSVSRLIAITDALGVPLVAAFDP 88


>gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 293

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R    LTQKE+  R   +   IS+ E G    +I+ ++ LA  L TP+ +
Sbjct: 3  ESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEE 62

Query: 80 LLK 82
          LLK
Sbjct: 63 LLK 65


>gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 293

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R    LTQKE+  R   +   IS+ E G    +I+ ++ LA  L TP+ +
Sbjct: 3  ESLSKKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEE 62

Query: 80 LLK 82
          LLK
Sbjct: 63 LLK 65


>gi|149277242|ref|ZP_01883384.1| possible transcriptional regulator [Pedobacter sp. BAL39]
 gi|149232119|gb|EDM37496.1| possible transcriptional regulator [Pedobacter sp. BAL39]
          Length = 86

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IRK   LTQ+ +  +   +Q+  S++E G S + ++ M  +A  L+  + +LL
Sbjct: 12 VAGNIKKIRKIKSLTQEFLAAKLDISQNAYSKIELGHSKLTVERMYQIADILNVDVIQLL 71

Query: 82 KP 83
           P
Sbjct: 72 SP 73


>gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA]
 gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA]
          Length = 124

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N R +RK   LTQ+ +    G   S IS +E G+   ++ +MI L   L+    +
Sbjct: 22 FILGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVE 81

Query: 80 LL 81
          L+
Sbjct: 82 LV 83


>gi|167851686|ref|ZP_02477194.1| possible transcriptional regulator, XRE family protein
          [Burkholderia pseudomallei B7210]
 gi|257140690|ref|ZP_05588952.1| XRE family transcriptional regulator [Burkholderia thailandensis
          E264]
          Length = 109

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P          +      +  R EA+ +Q+ +       +++IS +E G +  +++ 
Sbjct: 4  KRSPSPPGRPAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVET 63

Query: 66 MIILAHTLDTPLWKLLKP 83
          +  + ++L+  L +L  P
Sbjct: 64 LANICYSLNITLAELFAP 81


>gi|116331586|ref|YP_801304.1| transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116125275|gb|ABJ76546.1| Transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 204

 Score = 57.7 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IR     +  ++ +R G +++ +S++E GKS   I  +  +A+ L+ P  +
Sbjct: 22 EVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSE 81

Query: 80 LLK 82
          LLK
Sbjct: 82 LLK 84


>gi|307324784|ref|ZP_07603990.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889666|gb|EFN20646.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 187

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +R E  LT   +  R+G A+  ISELE G+    I+ +  LA+ L+  L  L
Sbjct: 7  VVAGNLQRLRGERGLTLAALAARSGVAKGTISELERGRGNPTIETLFALAYALEATLADL 66

Query: 81 LK 82
          ++
Sbjct: 67 VE 68


>gi|296502946|ref|YP_003664646.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|296323998|gb|ADH06926.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 186

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|312114539|ref|YP_004012135.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
 gi|311219668|gb|ADP71036.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
          Length = 206

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R E  L+  E+  + G ++S +S +E G   +++  M  LA  L  P+ ++L
Sbjct: 27 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEALAGALGVPVTEIL 84


>gi|262377235|ref|ZP_06070460.1| helix-turn-helix domain-containing protein [Acinetobacter lwoffii
          SH145]
 gi|262307973|gb|EEY89111.1| helix-turn-helix domain-containing protein [Acinetobacter lwoffii
          SH145]
          Length = 76

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK  KLTQ+++       +S++  +E G+  I ++ +  +A  L+  +  L+
Sbjct: 8  FGLKVREQRKLKKLTQEKLALLCNIDRSYMGRIERGEVNITLEKIYEIAQALEIDILDLM 67


>gi|257469538|ref|ZP_05633630.1| MerR family transcriptional regulator [Fusobacterium ulcerans
          ATCC 49185]
 gi|317063782|ref|ZP_07928267.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313689458|gb|EFS26293.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 185

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR E  L  K++  +   + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 7  VGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFKFF 66


>gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 247

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                +R+E   +Q+E+  R G ++  +S+ E  +S+ +  N+I LA      
Sbjct: 16 AQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69


>gi|116327751|ref|YP_797471.1| transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116120495|gb|ABJ78538.1| Transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
          Length = 204

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IR     +  ++ +R G +++ +S++E GKS   I  +  +A+ L+ P  +
Sbjct: 22 EVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSE 81

Query: 80 LLK 82
          LLK
Sbjct: 82 LLK 84


>gi|30020482|ref|NP_832113.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|29896033|gb|AAP09314.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
          Length = 186

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 112

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  R +  +TQ  +    G + S  S +E+GK+ IN+  ++ +A  LDT +  
Sbjct: 6  ELLGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTTIDS 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|310640139|ref|YP_003944897.1| hth-type transcriptional regulator [Paenibacillus polymyxa SC2]
 gi|309245089|gb|ADO54656.1| Putative HTH-type transcriptional regulator [Paenibacillus
          polymyxa SC2]
          Length = 184

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N +++R E KL+  ++ + TG +++ + ++E G+S  +I  +  +A+ L      
Sbjct: 7  LILSKNLKHLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTA 66

Query: 80 LL 81
          L+
Sbjct: 67 LI 68


>gi|257790750|ref|YP_003181356.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317488538|ref|ZP_07947086.1| hypothetical protein HMPREF1023_00784 [Eggerthella sp. 1_3_56FAA]
 gi|257474647|gb|ACV54967.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316912372|gb|EFV33933.1| hypothetical protein HMPREF1023_00784 [Eggerthella sp. 1_3_56FAA]
          Length = 72

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N   +R  A ++Q       G ++ ++ ++E+GK+   +D +  +A  LDT + 
Sbjct: 7  KTQLGTNIARLRASANVSQTSFALMVGVSRKYLIDIESGKANPTVDMLERIAGGLDTTVG 66

Query: 79 KLLK 82
          +L +
Sbjct: 67 QLFE 70


>gi|209524129|ref|ZP_03272680.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328]
 gi|209495504|gb|EDZ95808.1| transcriptional regulator, XRE family [Arthrospira maxima CS-328]
          Length = 79

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                    R  AK++Q+E+ +R G  ++++S++E G  +  +  +  ++ +L+T    
Sbjct: 6  KALGQVLIKYRTLAKISQEELADRAGIHRTYVSQIERGLKSPTLSVLFRISQSLNTTASV 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|50955531|ref|YP_062819.1| hypothetical protein Lxx19990 [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50952013|gb|AAT89714.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 116

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    R  R    ++Q++I N      +    +E G++   +  ++ LA  LD     
Sbjct: 10 ELFGQRIRQARLAIGMSQEDIANLAAMHVTNYGRVERGEANSELHTIVRLATALDVDPAG 69

Query: 80 LLK 82
          L++
Sbjct: 70 LVQ 72


>gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum
          WAL-14673]
 gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum
          WAL-14673]
          Length = 180

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N R +R+E KL+  E+   +G ++S ++++E G     I  +  +++ +  P   
Sbjct: 3  LIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPFDA 62

Query: 80 L-LKP 83
          L ++P
Sbjct: 63 LTVRP 67


>gi|313889505|ref|ZP_07823151.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313122117|gb|EFR45210.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
          Length = 135

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R E   +Q  + ++   ++  IS+ E G ST +++N++ LA   D  L +L+
Sbjct: 4  FAKQLKKYRLEKNYSQDTLADQLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLV 63

Query: 82 K 82
          +
Sbjct: 64 R 64


>gi|78066449|ref|YP_369218.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77967194|gb|ABB08574.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 93

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R E  ++Q+ +   TG  +S +  +E G+  + I N+I +A  L+    KLLK
Sbjct: 30 GATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKLLK 89


>gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1]
 gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1]
          Length = 189

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  L+ +++  R G  +S++S++E G ST ++   + LA  L   + +L 
Sbjct: 5  RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLF 61


>gi|223986671|ref|ZP_03636661.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM
          12042]
 gi|223961357|gb|EEF65879.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM
          12042]
          Length = 124

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R +  LTQ+ +  + G +   IS +ETG + ++++  + +A+ L+    +L
Sbjct: 13 LLGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELFVSIANALNVTPDEL 72

Query: 81 L 81
          +
Sbjct: 73 I 73


>gi|218659550|ref|ZP_03515480.1| XRE family transcriptional regulator [Rhizobium etli IE4771]
          Length = 73

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R IR   +LTQ+E+ +RTG +   I  +E  + +  +  +  ++  L     
Sbjct: 4  KEVMATNLRRIRHGKQLTQEELAHRTGLSMRHIGAIERAEMSATVTVLGQISEALGVEPA 63

Query: 79 KLLK 82
          +L+ 
Sbjct: 64 ELVT 67


>gi|188583928|ref|YP_001927373.1| XRE family transcriptional regulator [Methylobacterium populi
           BJ001]
 gi|179347426|gb|ACB82838.1| transcriptional regulator, XRE family [Methylobacterium populi
           BJ001]
          Length = 124

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 8   EPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           E  L  A + ER++   N  R  R+   LT   +  + G AQ+++S++ETG     ++  
Sbjct: 49  EEELIPASVVERLVSGENRVRVWREHRGLTGAALAKQAGLAQAYLSQIETGAREGTVETY 108

Query: 67  IILAHTLDTPLWKL 80
             LA  L   L  L
Sbjct: 109 SKLAAALGVSLDDL 122


>gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
 gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
          Length = 184

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC
          29098]
 gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC
          29098]
          Length = 183

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 37/65 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+         RK   +TQ+E+ +R G ++  +++ ETG+S+ +ID + +L   L T L 
Sbjct: 9  RIRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLD 68

Query: 79 KLLKP 83
          +L+ P
Sbjct: 69 ELIVP 73


>gi|160902864|ref|YP_001568445.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160360508|gb|ABX32122.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95]
          Length = 178

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +++R    +TQ+E+  R+   + +IS++E   ++  ++N+ ++   L T L  
Sbjct: 1  MQIGEKIKSLRIMRNMTQEELATRSDLTRGFISQVERDLASPTVENLEMILRALGTDLKD 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|296106673|ref|YP_003618373.1| hypothetical protein lpa_01638 [Legionella pneumophila 2300/99
          Alcoy]
 gi|295648574|gb|ADG24421.1| hypothetical protein lpa_01638 [Legionella pneumophila 2300/99
          Alcoy]
          Length = 87

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              + ++     R IRKE   +Q+   N     + +   +E G++ I I N++ +   L
Sbjct: 2  KKQTDLIVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGL 61

Query: 74 DTPLWKLLKP 83
          +    +L  P
Sbjct: 62 EVTPNELFPP 71


>gi|153814290|ref|ZP_01966958.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC
          27756]
 gi|145848686|gb|EDK25604.1| hypothetical protein RUMTOR_00499 [Ruminococcus torques ATCC
          27756]
          Length = 125

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R++   +Q ++   T  + S+IS +E  K   +++++I + + L   + +
Sbjct: 11 KQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRIVNALGITVDE 70

Query: 80 LL 81
          LL
Sbjct: 71 LL 72


>gi|229017733|ref|ZP_04174622.1| Transcriptional regulator, XRE [Bacillus cereus AH1273]
 gi|229023949|ref|ZP_04180429.1| Transcriptional regulator, XRE [Bacillus cereus AH1272]
 gi|228737327|gb|EEL87842.1| Transcriptional regulator, XRE [Bacillus cereus AH1272]
 gi|228743549|gb|EEL93660.1| Transcriptional regulator, XRE [Bacillus cereus AH1273]
          Length = 205

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 25 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGNANPSLNVLELIAKALNVPLFTLF 84


>gi|229044145|ref|ZP_04191828.1| Transcriptional regulator, XRE [Bacillus cereus AH676]
 gi|228725192|gb|EEL76466.1| Transcriptional regulator, XRE [Bacillus cereus AH676]
          Length = 177

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 12 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 71


>gi|154502629|ref|ZP_02039689.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC
          29149]
 gi|153796821|gb|EDN79241.1| hypothetical protein RUMGNA_00442 [Ruminococcus gnavus ATCC
          29149]
          Length = 125

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R++   +Q ++   T  + S+IS +E  K   +++++I + + L   + +
Sbjct: 11 KQIGYRIKEVREQNNFSQAQLAEETELSISYISHIENAKRKASLESIIRIVNALGITVDE 70

Query: 80 LL 81
          LL
Sbjct: 71 LL 72


>gi|311894823|dbj|BAJ27231.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 191

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R E   T   +  R+G ++  + ++E  ++  ++  ++ LA  L   + +LL
Sbjct: 11 LARNLKRLRLERGHTLDALAARSGVSRGMVVQIEQARTNPSVGTVVRLADALGVSIARLL 70


>gi|223933458|ref|ZP_03625443.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|330831854|ref|YP_004400679.1| XRE family transcriptional regulator [Streptococcus suis ST3]
 gi|223897896|gb|EEF64272.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|329306077|gb|AEB80493.1| transcriptional regulator, XRE family [Streptococcus suis ST3]
          Length = 121

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q E+  +   ++  +S+ E G++T +ID ++ LA      L  L+
Sbjct: 4  LAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDYLV 63


>gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 105

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++  L+  ++    G  QS +S +E G+    ID +I + + LD  L +  
Sbjct: 4  VGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGERNPTIDVIIKICNALDITLVEFF 63


>gi|167032863|ref|YP_001668094.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859351|gb|ABY97758.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 177

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R++R  A ++Q  +  R+G ++  +  +E G+  +++  + ++A  L      L++
Sbjct: 8  NVRSLRNAAGMSQTALAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLIQ 65


>gi|308068246|ref|YP_003869851.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681]
 gi|305857525|gb|ADM69313.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus
          polymyxa E681]
          Length = 182

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N   IRK   L+  ++   TG ++  ++++E GKS   +  +  +A+ L       
Sbjct: 7  IIGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGKSNPTVTTLWKIANGLHVSFSTF 66

Query: 81 LK 82
          LK
Sbjct: 67 LK 68


>gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 502

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
               +     + +      R+ R E  LT +++  R G A S IS  E+G    +I  +
Sbjct: 21 ASAESATQGTADALSIGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVL 80

Query: 67 IILAHTLDTPLWKLLKP 83
            LA  LDT   +LL P
Sbjct: 81 TALAKALDTSAAELLDP 97


>gi|218233270|ref|YP_002367096.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228939550|ref|ZP_04102137.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228972402|ref|ZP_04133013.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228979016|ref|ZP_04139380.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407]
 gi|218161227|gb|ACK61219.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228780727|gb|EEM28941.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407]
 gi|228787419|gb|EEM35387.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228820120|gb|EEM66158.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326940096|gb|AEA15992.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 186

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T ++  +  G + S IS++E G +  +++ + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIRDFADYAGISTSLISQIERGHANPSLNVLELIAKALNVPLFTLF 65


>gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum
          H04402 065]
          Length = 181

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+RKE  LT K++  +TG + S++S++E   S++ I ++  +   L+ P+    K
Sbjct: 6  AEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYFFK 65


>gi|313680627|ref|YP_004058366.1| helix-turn-helix domain protein [Oceanithermus profundus DSM
          14977]
 gi|313153342|gb|ADR37193.1| helix-turn-helix domain protein [Oceanithermus profundus DSM
          14977]
          Length = 130

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              FR +RKE     K++   TG +  ++S+LE  ++  +++ +  LA      +  L+
Sbjct: 3  LAERFRELRKERGWRLKDVAEATGLSIPYLSDLERDRTNPSLETLRTLAEAYGMSVHDLM 62

Query: 82 KP 83
           P
Sbjct: 63 AP 64


>gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131]
 gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131]
          Length = 78

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I     R  RK   L+  E+ N  G +Q  IS  E G+  INI+N+  LA+ LDT +
Sbjct: 7  IVGREIRKRRKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEM 63


>gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM
           15053]
 gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM
           15053]
          Length = 262

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            ++ F    + +RK   LTQ+++      +++ IS+ E+G+   +ID++  ++      L
Sbjct: 60  AKLEFNEKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRGYPSIDSLKEISKFFTISL 119

Query: 78  WKLL 81
             LL
Sbjct: 120 DDLL 123


>gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 206

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++R+      R  RKE  LT KE+  R+G + ++IS++E GK+  +I +++ ++  L  
Sbjct: 19 KDRINIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALGV 77


>gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis
          GZ1]
          Length = 121

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R    L+Q E+  +   ++  +S+ E G++T +ID ++ LA      L  
Sbjct: 4  KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 63

Query: 80 LL 81
          L+
Sbjct: 64 LV 65


>gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 75

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R+   L+Q  + + +G ++S I  LE G     +  +++LA TL      
Sbjct: 12 KTIGKKIKTLREAKGLSQYALSDESGISRSQIVRLENGDLNCTLATLLVLAETLGVEPKD 71

Query: 80 LL 81
          LL
Sbjct: 72 LL 73


>gi|52143068|ref|YP_083761.1| MerR family transcriptional regulator [Bacillus cereus E33L]
 gi|206973592|ref|ZP_03234510.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|222095997|ref|YP_002530054.1| transcriptional regulator, merr family [Bacillus cereus Q1]
 gi|51976537|gb|AAU18087.1| possible transcriptional regulator, MerR family [Bacillus cereus
          E33L]
 gi|206747748|gb|EDZ59137.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|221240055|gb|ACM12765.1| possible transcriptional regulator, MerR family [Bacillus cereus
          Q1]
 gi|324326426|gb|ADY21686.1| putative transcriptional regulator, MerR family protein [Bacillus
          thuringiensis serovar finitimus YBT-020]
          Length = 186

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|24215594|ref|NP_713075.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45657038|ref|YP_001124.1| transcriptional regulator [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|24196747|gb|AAN50093.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45600275|gb|AAS69761.1| transcriptional regulator [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 203

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IR     +  ++ +R G +++ +S++E GKS   I  +  +A+ L+ P  +
Sbjct: 21 EVVKENLKLIRHTKGFSLDKLASRCGVSRAMLSQIEQGKSVPTISVLWKIANGLNVPFSE 80

Query: 80 LLK 82
          LLK
Sbjct: 81 LLK 83


>gi|116688222|ref|YP_833845.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|116646311|gb|ABK06952.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 109

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R  A  +Q+ +       +++IS +E G +  +++ +  + ++L+  L +L 
Sbjct: 20 LGKRIKECRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYSLNVTLGELF 79

Query: 82 KP 83
           P
Sbjct: 80 AP 81


>gi|330900500|gb|EGH31919.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 201

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPIEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|325475695|gb|EGC78871.1| DNA-binding protein [Treponema denticola F0402]
          Length = 93

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ + +N  R  R++A L+Q E+  R   +Q+ I+ +ETGK T ++D ++ + H L+   
Sbjct: 8  QQNLVINRLRKEREKAGLSQLELALRADISQNMINYIETGKRTPSLDTLLKICHALNINP 67

Query: 78 WKLL 81
            L 
Sbjct: 68 AVLF 71


>gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 179

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L    
Sbjct: 4  GEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLRDFF 62


>gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 126

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +   N+R+ A L+Q+++ ++   ++  +S+ E G +  +ID ++ +A  L   L +L+
Sbjct: 4  FQHQLANLRQAAGLSQEQLADQLHVSRQAVSKWENGSTLPDIDKIVQIADILQVSLDELV 63


>gi|237741587|ref|ZP_04572068.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|237744995|ref|ZP_04575476.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|256026806|ref|ZP_05440640.1| MerR family transcriptional regulator [Fusobacterium sp. D11]
 gi|260494772|ref|ZP_05814902.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
 gi|289764802|ref|ZP_06524180.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|294785805|ref|ZP_06751093.1| DNA-binding protein [Fusobacterium sp. 3_1_27]
 gi|229429235|gb|EEO39447.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|229432224|gb|EEO42436.1| transcriptional regulator [Fusobacterium sp. 7_1]
 gi|260197934|gb|EEW95451.1| transcriptional regulator [Fusobacterium sp. 3_1_33]
 gi|289716357|gb|EFD80369.1| transcriptional regulator [Fusobacterium sp. D11]
 gi|294487519|gb|EFG34881.1| DNA-binding protein [Fusobacterium sp. 3_1_27]
          Length = 185

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +NIRK  KL  K++  + G + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 7  VGITIKNIRKAKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 66


>gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787]
 gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1]
 gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787]
 gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1]
          Length = 223

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|297560394|ref|YP_003679368.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296844842|gb|ADH66862.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 490

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++R+   LT  ++  R G A S +S LE GK    +  +  LA  L   + +LL
Sbjct: 21 FGQRLRHLRRARGLTLSDLGERVGRAPSQLSLLENGKREPKLSLLTSLASALGVSVEELL 80


>gi|197104964|ref|YP_002130341.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
 gi|196478384|gb|ACG77912.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
          Length = 69

 Score = 57.3 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +R R +   N R +R+   L+Q+E+ +R    ++++  LE  +    ID +  L+  L+ 
Sbjct: 1  MRLRGVVARNLRRLRQAKGLSQEELADRADINRNYVGLLEREEHAATIDMLEKLSEVLEV 60

Query: 76 PL 77
            
Sbjct: 61 EP 62


>gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84]
 gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7]
 gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84]
 gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7]
 gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14]
          Length = 119

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R    L+Q E+  +   ++  +S+ E G++T +ID ++ LA      L  
Sbjct: 2  KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 61

Query: 80 LL 81
          L+
Sbjct: 62 LV 63


>gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp.
          1_1_41FAA]
 gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp.
          1_1_41FAA]
          Length = 184

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 201

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR + D    + A   + ++     R +RK   LT ++I    G +  ++S++E  +S 
Sbjct: 1  MPRDEVDAASPAAAGNEQELLLGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSK 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          + I  +  +A  L   L    +P
Sbjct: 61 LPIGVLKRIATILGVQLSWFFQP 83


>gi|152974571|ref|YP_001374088.1| helix-turn-helix domain-containing protein [Bacillus cereus
          subsp. cytotoxis NVH 391-98]
 gi|152023323|gb|ABS21093.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 69

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE  L+Q+ +   +    + I  +E G+  + I+++  + + L   L +L 
Sbjct: 7  LGERIRLLRKEQNLSQERLGELSNIHTNHIGAIERGEKNVTIESLAKITNGLGITLEELF 66

Query: 82 K 82
          +
Sbjct: 67 R 67


>gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 202

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           H  D +L          R +R++  +T  ++   TG ++S +S LE+G+   +++ ++ 
Sbjct: 3  HHADDEVLGA---VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLP 59

Query: 69 LAHTLDTPLWKLL 81
          LA   D PL  L+
Sbjct: 60 LARIYDVPLDDLV 72


>gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
          27755]
 gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC
          27755]
          Length = 295

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +RK+A ++Q+++  + G ++  +++ ETG    +I+N++ ++   D  +  
Sbjct: 3  MTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISIDD 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|146337900|ref|YP_001202948.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146190706|emb|CAL74710.1| Conserved hypothetical protein; putative transcriptional
          regulator [Bradyrhizobium sp. ORS278]
          Length = 76

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N R IR +  ++Q+++ +  G  ++++S +E   + + ++ +   A  L     
Sbjct: 4  RQRFATNLRRIRHDRGISQEDLAHEAGVDRAYVSRIERAVTYVGLEIIGKFAEVLKVDPV 63

Query: 79 KLL 81
          +  
Sbjct: 64 EFF 66


>gi|192291255|ref|YP_001991860.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192285004|gb|ACF01385.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          TIE-1]
          Length = 207

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N R +R     + + +  ++G +++ + ++ETGKS   I  +  +A  L  P  +L
Sbjct: 25 IVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARL 84

Query: 81 L 81
          +
Sbjct: 85 I 85


>gi|312113826|ref|YP_004011422.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
 gi|311218955|gb|ADP70323.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC
          17100]
          Length = 199

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R E  L+  E+  + G ++S +S +E G   +++  M  LA  L  P+ ++L
Sbjct: 20 NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEALAGALGVPVTEIL 77


>gi|134299094|ref|YP_001112590.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051794|gb|ABO49765.1| putative transcriptional regulator, XRE family [Desulfotomaculum
          reducens MI-1]
          Length = 69

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    +   +RK+ K TQ ++   TG ++ +I+ +E G+    +  + I+A  L   + +
Sbjct: 1  MSVGKSIAKLRKQKKWTQSKLAKETGLSRGYIASIEQGRRHPALKTLTIIAEKLGVEMRE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIR 63


>gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2]
 gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2]
          Length = 196

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     R+ RK  +LT  E+  R G +QS +S++E GK+  ++D +  L+   D PL
Sbjct: 13 EIIGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLWKLSILFDVPL 70


>gi|262377548|ref|ZP_06070770.1| RtrR protein [Acinetobacter lwoffii SH145]
 gi|262307604|gb|EEY88745.1| RtrR protein [Acinetobacter lwoffii SH145]
          Length = 70

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RN R E K+TQ+++       +S++  +E G+  I +  +  +A  L      LL
Sbjct: 9  GHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKVAPHDLL 67


>gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri
          DSM 1131]
 gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri
          DSM 1131]
          Length = 185

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+   L+  E+   +G +++ +S+LE+G S   ID +  +A  L  PL  L  
Sbjct: 10 GQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSNPRIDTLESIAIALRFPLSDLFT 69


>gi|163734287|ref|ZP_02141727.1| DNA-binding protein [Roseobacter litoralis Och 149]
 gi|161392295|gb|EDQ16624.1| DNA-binding protein [Roseobacter litoralis Och 149]
          Length = 190

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E      + R +RK   LT  ++  R G +  W+S++E  KS  +I ++  +A  L+ 
Sbjct: 6  PDEPQTLGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEV 65

Query: 76 PLWKLLK 82
           +  L +
Sbjct: 66 SISMLFR 72


>gi|30262414|ref|NP_844791.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527707|ref|YP_019056.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185259|ref|YP_028511.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|118477813|ref|YP_894964.1| MerR family transcriptional regulator [Bacillus thuringiensis
          str. Al Hakam]
 gi|165870483|ref|ZP_02215137.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167633086|ref|ZP_02391412.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167639621|ref|ZP_02397891.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170687038|ref|ZP_02878257.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170706715|ref|ZP_02897174.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177649613|ref|ZP_02932615.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190565573|ref|ZP_03018493.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196033861|ref|ZP_03101272.1| DNA-binding protein [Bacillus cereus W]
 gi|196043683|ref|ZP_03110921.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|218903548|ref|YP_002451382.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225864377|ref|YP_002749755.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227814774|ref|YP_002814783.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228927463|ref|ZP_04090518.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933732|ref|ZP_04096579.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228946017|ref|ZP_04108357.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228985502|ref|ZP_04145659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229091390|ref|ZP_04222604.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42]
 gi|229121957|ref|ZP_04251175.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
 gi|229155991|ref|ZP_04284092.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342]
 gi|229184624|ref|ZP_04311825.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|229196624|ref|ZP_04323368.1| Transcriptional regulator, XRE [Bacillus cereus m1293]
 gi|229604374|ref|YP_002866746.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254684990|ref|ZP_05148850.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722396|ref|ZP_05184184.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254737437|ref|ZP_05195141.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743378|ref|ZP_05201063.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751753|ref|ZP_05203790.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254760271|ref|ZP_05212295.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30257045|gb|AAP26277.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502855|gb|AAT31531.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179186|gb|AAT54562.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|118417038|gb|ABK85457.1| transcriptional regulator, MerR family [Bacillus thuringiensis
          str. Al Hakam]
 gi|164713638|gb|EDR19161.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167512330|gb|EDR87706.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167531898|gb|EDR94563.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170128446|gb|EDS97314.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669089|gb|EDT19833.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084687|gb|EDT69745.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190563600|gb|EDV17565.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195993541|gb|EDX57498.1| DNA-binding protein [Bacillus cereus W]
 gi|196025992|gb|EDX64661.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|218536010|gb|ACK88408.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225787172|gb|ACO27389.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227004110|gb|ACP13853.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228586980|gb|EEK45054.1| Transcriptional regulator, XRE [Bacillus cereus m1293]
 gi|228598837|gb|EEK56456.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|228627598|gb|EEK84324.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 4342]
 gi|228661485|gb|EEL17107.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
 gi|228691932|gb|EEL45675.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-42]
 gi|228774267|gb|EEM22676.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228813663|gb|EEM59944.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228825965|gb|EEM71751.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832182|gb|EEM77764.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229268782|gb|ACQ50419.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 186

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|154244532|ref|YP_001415490.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154158617|gb|ABS65833.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus
          Py2]
          Length = 82

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          R +F  N +  R    L+Q+E+ +R G  +++IS LE      +ID +  
Sbjct: 4  REVFARNLKAARLAKGLSQEELAHRAGIDRTYISSLERSVYNASIDVVDR 53


>gi|227499929|ref|ZP_03930022.1| hypothetical protein HMPREF0077_0657 [Anaerococcus tetradius ATCC
          35098]
 gi|227218038|gb|EEI83311.1| hypothetical protein HMPREF0077_0657 [Anaerococcus tetradius ATCC
          35098]
          Length = 308

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
          ER  F      IR+   L Q ++   +  +Q  I  LE G+    ++D++I L+   +  
Sbjct: 20 ERKEFGKKLIEIREVKGLRQADVAEISDISQRTIGRLERGEIFNPSVDSLIELSKIYNID 79

Query: 77 LWKLLK 82
          +  L K
Sbjct: 80 ILTLYK 85


>gi|218290296|ref|ZP_03494442.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239651|gb|EED06843.1| transcriptional regulator, XRE family [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 223

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            I  NN R +R+    +  E+  R+G A+  IS+LE+G     +  +  LA  L  P   
Sbjct: 39  KIVSNNLRTLRQARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPFSD 98

Query: 80  LLK 82
           L++
Sbjct: 99  LIQ 101


>gi|56698227|ref|YP_168599.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56679964|gb|AAV96630.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 189

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +           + R +RK   LT  EI  R G +  W+S++E   S  +I ++  +A  
Sbjct: 2  NTQAPSSATLGADLRALRKARGLTLSEIAARLGRSVGWLSQVERDMSEPSISDLRQIAGC 61

Query: 73 LDTPLWKLL 81
          L  P+  L 
Sbjct: 62 LGVPMSMLF 70


>gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51]
 gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 123

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
               R IRK+ KL+  E+   +G A+S IS+LE+GK  + +ID +  LA  L+  +  L
Sbjct: 4  LGKQLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVASL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|255065143|ref|ZP_05316998.1| DNA-binding protein [Neisseria sicca ATCC 29256]
 gi|255050564|gb|EET46028.1| DNA-binding protein [Neisseria sicca ATCC 29256]
          Length = 105

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMATALGVAAY 77


>gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans
          DSM 16841]
 gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans
          DSM 16841]
          Length = 145

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +E+++F  N   +RK   ++Q E+ ++ G ++  +S+ ETG+S  +I+    LA      
Sbjct: 3  KEKIMFAENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVT 62

Query: 77 LWKLL 81
          +  L+
Sbjct: 63 VDDLI 67


>gi|89054805|ref|YP_510256.1| XRE family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864354|gb|ABD55231.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1]
          Length = 208

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R  R     +  +  +        R +RK    T ++   + G A+S +S++E G+ +  
Sbjct: 12 RLARASGEEAVPVPVD---LAARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPT 68

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
           D +  LA+ L   + +L  P
Sbjct: 69 YDALKKLANGLGISVPQLFTP 89


>gi|300691862|ref|YP_003752857.1| hypothetical protein RPSI07_2218 [Ralstonia solanacearum PSI07]
 gi|299078922|emb|CBM10198.1| conserved protein of unknown function [Ralstonia solanacearum
          PSI07]
          Length = 182

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T + +  RTG  +S++S++E G S  +I   + LA  L  P   L 
Sbjct: 4  RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60


>gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
 gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris]
 gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
 gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis
          subsp. cremoris NZ9000]
          Length = 252

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + +RKEAKLTQ ++ ++ G  Q+     E   +   ++ +  LA   D P+ +L+
Sbjct: 3  FGQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica
          DSM 7489]
 gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489]
          Length = 257

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          MIF   N R++R    +TQ+ +    G  ++ +S  E G+S   I+ +I L+     P+ 
Sbjct: 1  MIFIATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRSAPTIETLIQLSDYFKLPID 60

Query: 79 KLLK 82
           L++
Sbjct: 61 VLVR 64


>gi|229161362|ref|ZP_04289347.1| Transcriptional regulator, XRE [Bacillus cereus R309803]
 gi|228622176|gb|EEK79017.1| Transcriptional regulator, XRE [Bacillus cereus R309803]
          Length = 186

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|213971279|ref|ZP_03399395.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301385049|ref|ZP_07233467.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302059128|ref|ZP_07250669.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302131456|ref|ZP_07257446.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923924|gb|EEB57503.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|330876283|gb|EGH10432.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
 gi|330958714|gb|EGH58974.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
 gi|330966976|gb|EGH67236.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str.
          M302091]
          Length = 201

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P+     L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPNEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|194017128|ref|ZP_03055740.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC
          7061]
 gi|194010996|gb|EDW20566.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC
          7061]
          Length = 67

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               +  RKE+ L+Q++   + GF  S+IS LE GK +    +++ ++  +  
Sbjct: 7  LARMLKQKRKESGLSQEDFAEKLGFTGSYISRLENGKVSPTFKSLVQISEHVGI 60


>gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme
          DSM 15981]
 gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme
          DSM 15981]
          Length = 195

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + +R+E KL+  E+   +G ++S ++++E G     I  +  +++ +  P   
Sbjct: 18 QIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGNPTISTLWKISNGMKVPFDA 77

Query: 80 L-LKP 83
          L ++P
Sbjct: 78 LTVRP 82


>gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 245

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     R++  LT + +   TGF+  ++S ++ G   +++ N+  ++  L  P+  L+
Sbjct: 16 NRIAEWREKRGLTLEALAEATGFSTGYLSRMQNGSRNVSLKNLAKISEALKVPVADLV 73


>gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
          2926]
 gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
          2926]
          Length = 190

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IRK+  L+  E    TG ++  + ++E G+S   +  +  +A  L  P  +
Sbjct: 6  EVIGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSNPTVSTLWKIATGLKVPFSE 65

Query: 80 LLK 82
           +K
Sbjct: 66 FMK 68


>gi|16767308|ref|NP_462923.1| hypothetical protein STM4042A [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|56415888|ref|YP_152963.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197364817|ref|YP_002144454.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. AKU_12601]
 gi|207859233|ref|YP_002245884.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|16422606|gb|AAL22882.1| hypothetical protein STM4042A [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|56130145|gb|AAV79651.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197096294|emb|CAR61895.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. AKU_12601]
 gi|206711036|emb|CAR35406.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|261249159|emb|CBG27020.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267996333|gb|ACY91218.1| hypothetical protein STM14_4861 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301160550|emb|CBW20080.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|332990871|gb|AEF09854.1| hypothetical protein STMUK_4027 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 188

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 13 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 72

Query: 81 LKP 83
          L+P
Sbjct: 73 LEP 75


>gi|39935673|ref|NP_947949.1| transcriptional regulator [Rhodopseudomonas palustris CGA009]
 gi|39649526|emb|CAE28048.1| possible transcriptional regulator, XRE family, CUPIN domain
          [Rhodopseudomonas palustris CGA009]
          Length = 207

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N R +R     + + +  ++G +++ + ++ETGKS   I  +  +A  L  P  +L
Sbjct: 25 IVGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARL 84

Query: 81 L 81
          +
Sbjct: 85 I 85


>gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787]
 gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787]
          Length = 122

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+   LTQ+E   +TGF  ++IS LE G S    +N+I+L + L+     + 
Sbjct: 18 GKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVSADAIF 76


>gi|166032956|ref|ZP_02235785.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC
          27755]
 gi|166027313|gb|EDR46070.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC
          27755]
          Length = 104

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R+   LTQ+E+      + + +S +E G     +D  I +A+ LD     
Sbjct: 4  KAVGQRIKAAREAKNLTQEELAGLVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|149926486|ref|ZP_01914747.1| predicted transcriptional regulator [Limnobacter sp. MED105]
 gi|149824849|gb|EDM84063.1| predicted transcriptional regulator [Limnobacter sp. MED105]
          Length = 68

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF +  R  RK   L+Q E+  R    +S++  +E G+  I ++    LA TL   + +
Sbjct: 6  KIFGSKVRAARKLRGLSQDELALRAEIDRSYMGRIERGEVRITLEKAYKLAATLGCDIKE 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536]
 gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11]
 gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a]
 gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536]
 gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11]
 gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional
          regulator [Escherichia coli ED1a]
 gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 60-1]
          Length = 194

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M +R +++   SD               +RK   LT  E+  R+G +Q+ IS++E G S+
Sbjct: 1  MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 52

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +   +  LA+ L+  L KL 
Sbjct: 53 PSATILSRLANALNITLSKLF 73


>gi|108759283|ref|YP_634009.1| DNA-binding protein [Myxococcus xanthus DK 1622]
 gi|108463163|gb|ABF88348.1| DNA-binding protein [Myxococcus xanthus DK 1622]
          Length = 170

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           LTQ++   R G + S+ S LE G+ + + + ++ +A  L  PLW+LL+
Sbjct: 30 GLTQEDFAARCGISVSFASLLERGERSPSYETLLQVAAALQLPLWELLR 78


>gi|310641032|ref|YP_003945790.1| DNA-binding protein [Paenibacillus polymyxa SC2]
 gi|309245982|gb|ADO55549.1| DNA-binding protein [Paenibacillus polymyxa SC2]
          Length = 182

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N   IRK   L+  ++   TG ++  ++++E G+S   +  +  +A+ L       
Sbjct: 7  IIGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGRSNPTVTTLWKIANGLHVSFSTF 66

Query: 81 LK 82
          LK
Sbjct: 67 LK 68


>gi|303229830|ref|ZP_07316610.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
 gi|302515590|gb|EFL57552.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
          Length = 90

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N    R EA +TQ ++   TG  QS IS++E G    ++  +  +AH     L
Sbjct: 32 ENIVKARIEAHMTQTQLSEVTGITQSDISKIENGNGNPSLKTLRKIAHAFGKKL 85


>gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 158

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R    LTQ E   R G +++ +S  E G S I+ D +  +         ++
Sbjct: 1  MIGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSPISTDIIDRICQAFQVSYREI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|66045512|ref|YP_235353.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae B728a]
 gi|63256219|gb|AAY37315.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a]
 gi|330943855|gb|EGH46095.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 201

 Score = 57.3 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 111

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++          R    +TQ+++   +GF+ S IS  ETG++  +I+N+I L+  L+ 
Sbjct: 2  KKNTIGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNV 59


>gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395]
 gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27]
 gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395]
 gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395]
 gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27]
          Length = 69

 Score = 57.3 bits (137), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK   LTQ ++       +S++  +E G+  I ++ +  +A TL   + +L
Sbjct: 8  LVGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVNITVEKLYQIADTLGCDVKEL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|331008014|ref|ZP_08331043.1| DNA-binding protein [gamma proteobacterium IMCC1989]
 gi|330418172|gb|EGG92809.1| DNA-binding protein [gamma proteobacterium IMCC1989]
          Length = 78

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + +       R+ RK    +Q+   +  G  ++++  +E G+  I+I N+I +++ LD  
Sbjct: 9  KAQKQLGKVIRDKRKALGYSQEAFASECGVHRTYMGAVERGERNISIMNIIRISNRLDIL 68

Query: 77 LWKLL 81
            +LL
Sbjct: 69 PSQLL 73


>gi|253582192|ref|ZP_04859415.1| transcription regulator [Fusobacterium varium ATCC 27725]
 gi|251835731|gb|EES64269.1| transcription regulator [Fusobacterium varium ATCC 27725]
          Length = 185

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR E  L  K++  +   + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 7  VGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFKFF 66


>gi|207722896|ref|YP_002253330.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2]
 gi|206588080|emb|CAQ18660.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2]
          Length = 182

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T + +  RTG  +S++S++E G S  +I   + LA  L  P   L 
Sbjct: 4  RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60


>gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 179

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T L     
Sbjct: 4  GAKIKELRVQKSLTQEELADRAELSKGFISQLERDITSPSIATLVDILQCLGTNLEAFFT 63


>gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 217

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E KLTQ+++    G ++  IS  E  KS  +I ++I ++   D  L  LLK
Sbjct: 6  GCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65


>gi|257875245|ref|ZP_05654898.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257809411|gb|EEV38231.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 204

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  LTQ+E+  +    +  IS  E  +ST +ID +I L+      L  
Sbjct: 1  MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60

Query: 80 LLKP 83
          LLKP
Sbjct: 61 LLKP 64


>gi|257865636|ref|ZP_05645289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257871972|ref|ZP_05651625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257799570|gb|EEV28622.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257806136|gb|EEV34958.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 204

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  LTQ+E+  +    +  IS  E  +ST +ID +I L+      L  
Sbjct: 1  MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60

Query: 80 LLKP 83
          LLKP
Sbjct: 61 LLKP 64


>gi|300704470|ref|YP_003746073.1| transcriptional regulator protein [Ralstonia solanacearum
          CFBP2957]
 gi|299072134|emb|CBJ43466.1| putative transcription regulator protein [Ralstonia solanacearum
          CFBP2957]
          Length = 182

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T + +  RTG  +S++S++E G S  +I   + LA  L  P   L 
Sbjct: 4  RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF 60


>gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 192

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E +      R  RK   ++   +   +G +Q ++S+LE G +T ++ ++  +A  LD  
Sbjct: 9  PEAVEVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLATPSLSSIYRIAEALDVT 68

Query: 77 LWKLLKP 83
              L+P
Sbjct: 69 PGTFLRP 75


>gi|78066472|ref|YP_369241.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77967217|gb|ABB08597.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia sp. 383]
          Length = 191

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D  +   M   N  R +R+  KLT  E     G ++ ++S++E G++T +I +++ +A 
Sbjct: 5  PDESVLVAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAK 64

Query: 72 TLDTPL 77
           L   +
Sbjct: 65 ALGVTM 70


>gi|19705366|ref|NP_602861.1| MunI regulatory protein [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
 gi|19713351|gb|AAL94160.1| MunI regulatory protein [Fusobacterium nucleatum subsp. nucleatum
          ATCC 25586]
          Length = 76

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 31/54 (57%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +R   +++Q++     G  ++++S +E GK  I+++N+  ++  L   + +L K
Sbjct: 13 LRNGKQISQEKFALEIGMDRTYLSSVEAGKRNISLENIEKISKGLGISISELFK 66


>gi|330974510|gb|EGH74576.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 189

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +            N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSQRPPVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVAFSDLIQ 75


>gi|261365423|ref|ZP_05978306.1| DNA-binding protein [Neisseria mucosa ATCC 25996]
 gi|288566083|gb|EFC87643.1| DNA-binding protein [Neisseria mucosa ATCC 25996]
          Length = 105

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  L    +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMATALGVAAY 77


>gi|160947244|ref|ZP_02094411.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270]
 gi|158446378|gb|EDP23373.1| hypothetical protein PEPMIC_01177 [Parvimonas micra ATCC 33270]
          Length = 180

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +N+R    LTQ+E+  R    + +IS+LE G ++ +I ++  +   L T +  
Sbjct: 4  GEKIKNLRTILGLTQEELAERAELTKGFISQLERGLTSPSISSLEDVLEALGTNISD 60


>gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 103

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+ K +Q+++    G +QS +S +E G     ++ +  + + L+  L    
Sbjct: 3  VGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQPTVETLNNICNALNITLVDFF 62


>gi|262373390|ref|ZP_06066669.1| RtrR protein [Acinetobacter junii SH205]
 gi|262313415|gb|EEY94500.1| RtrR protein [Acinetobacter junii SH205]
          Length = 70

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RN R E K+TQ+++       +S++  +E G+  I +  +  +A  L      LL
Sbjct: 9  GHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKVAPHDLL 67


>gi|239820588|ref|YP_002947773.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805441|gb|ACS22507.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 67

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +RK   ++Q+E+ +R+   +S++S +E G     +  ++ +A  L   + +
Sbjct: 1  MALGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAE 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|42781543|ref|NP_978790.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42737466|gb|AAS41398.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 185

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|19554107|ref|NP_602109.1| hypothetical protein NCgl2819 [Corynebacterium glutamicum ATCC
           13032]
 gi|62391757|ref|YP_227159.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|41327099|emb|CAF20943.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC
           13032]
          Length = 127

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
            D   L    L  R          RK+  +TQ ++   +G  Q+ IS++E G +      
Sbjct: 49  EDASALITQELASRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLANPTFST 108

Query: 66  MIILAHTLD 74
           +  LA  L 
Sbjct: 109 LESLASHLG 117


>gi|296127426|ref|YP_003634678.1| XRE family transcriptional regulator [Brachyspira murdochii DSM
          12563]
 gi|296019242|gb|ADG72479.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM
          12563]
          Length = 129

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +RK  K+T  E+  ++  +  ++  +E G   I+I N+  +   L+T    LL
Sbjct: 11 LGQNIRELRKNKKMTIDELEEKSSLSGKYLQGVEVGNRNISIKNLNKICKALETSPDTLL 70


>gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str.
          Sakai]
 gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC869]
 gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli
          O157:H7 str. EC4024]
 gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia
          coli O157:H7 str. FRIK966]
 gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str.
          CB9615]
 gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4076]
 gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4401]
 gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4486]
 gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC869]
 gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4206]
 gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4045]
 gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4042]
 gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          EC4115]
 gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str.
          TW14588]
 gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str.
          CB9615]
 gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str.
          G5101]
 gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str.
          493-89]
 gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str.
          H 2687]
 gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str.
          LSU-61]
 gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7
          str. 1125]
          Length = 194

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M +R +++   SD               +RK   LT  E+  R+G +Q+ IS++E G S+
Sbjct: 1  MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 52

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +   +  LA+ L+  L KL 
Sbjct: 53 PSATILSRLANALNITLSKLF 73


>gi|330469393|ref|YP_004407136.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328812364|gb|AEB46536.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 186

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D       I     R  R+   ++  E+  R G A+S +S+LE G    +++ +  L  
Sbjct: 3  PDPSPPLATI-AAALRQERQRVGISLTELARRAGIAKSTLSQLEAGLGNPSMETLWALCV 61

Query: 72 TLDTPLWKLLKP 83
           LD P  +L++P
Sbjct: 62 ALDIPFSRLVEP 73


>gi|297623546|ref|YP_003704980.1| XRE family transcriptional regulator [Truepera radiovictrix DSM
          17093]
 gi|297164726|gb|ADI14437.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM
          17093]
          Length = 187

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R +R     T +++  R+G ++S++S LE G++ ++   +  LA      L 
Sbjct: 3  RHHLGHRLRALRLAHGYTLQQVAERSGLSRSFLSMLENGRTNVSAVRLQKLAGVFGLGLS 62

Query: 79 KLL 81
           LL
Sbjct: 63 DLL 65


>gi|266621149|ref|ZP_06114084.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
 gi|288867198|gb|EFC99496.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
          Length = 66

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  L+Q+++  R G  +  IS +E+G     ++  I +   L   L +L 
Sbjct: 4  KRLKIARIEHDLSQEQLGERVGVTRQTISMIESGNYNPTLNLCIAICKELGKTLDELF 61


>gi|260437594|ref|ZP_05791410.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809947|gb|EFF69152.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 80

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLW 78
          I   N    R+   LTQ ++  +T  +++ IS +E    K+ I++D +  +A+ LD P +
Sbjct: 9  ILGLNIAYYRRIKGLTQLQLAEKTNVSRTHISNIEAPNKKTAISLDLLFSIAYALDIPPF 68

Query: 79 KLL 81
          +LL
Sbjct: 69 RLL 71


>gi|320105807|ref|YP_004181397.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319924328|gb|ADV81403.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 95

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+   LTQ  +  + G  +S+IS++E G+ +I++  + ++A      L  +L
Sbjct: 33 FGRRLRELRQSRNLTQLAMAEQFGIDRSFISDVECGRKSISLPTLEVMALGFKLSLSDIL 92

Query: 82 K 82
          +
Sbjct: 93 R 93


>gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 143

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTL 73
           +     R +R+   L+Q+ +    G ++S IS LE  +          +  +  +AH L
Sbjct: 15 FVLAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHAL 74

Query: 74 DTPLWKLL 81
            P   LL
Sbjct: 75 HVPPVALL 82


>gi|91784659|ref|YP_559865.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91688613|gb|ABE31813.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 99

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 2  PRRKR-DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          P R      + S+  L     F    R  R    + Q E  +R G ++S + ++E G+  
Sbjct: 8  PGRPAGTSTYESEPALA----FGQAVRVARVAQGIAQDEFASRAGISRSHMGKIERGEHV 63

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            +  ++ +A  L      L+
Sbjct: 64 PTLPVILKIAMALRISAADLM 84


>gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor
          domain protein [Clostridium sp. D5]
 gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor
          domain protein [Clostridium sp. D5]
          Length = 189

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE  +T K++   TG +  ++S LE    +  +DN+  +   L+  L +LL
Sbjct: 17 VGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDACSPTLDNLQKICGVLEISLIELL 76


>gi|126699658|ref|YP_001088555.1| putative regulatory protein [Clostridium difficile 630]
 gi|255101172|ref|ZP_05330149.1| putative regulatory protein [Clostridium difficile QCD-63q42]
 gi|115251095|emb|CAJ68926.1| Transcriptional regulator, HTH-type [Clostridium difficile]
          Length = 120

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R +  +TQ+ + N      S +S +ETGK+ +++  +I +A+ L   +  
Sbjct: 6  KAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDT 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 120

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++RK+  L+Q E+        + I   E G S  + D +  LA  LD     LL
Sbjct: 8  FAERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSRPSGDTLKRLADALDVSSDYLL 67

Query: 82 K 82
          +
Sbjct: 68 E 68


>gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 223

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|226361968|ref|YP_002779746.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226240453|dbj|BAH50801.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 221

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 1  MPRRKRDEPHLS--DAILRER-------------MIFVNNFRNIRKEAKLTQKEIRNRTG 45
          M  R   E H    D    ER              +     R +RK + L+  ++  + G
Sbjct: 1  MTTRPETEVHRDTGDPAPVEREVPSDTPTGPDLEKVIARQVRALRKASGLSVGDMAAKVG 60

Query: 46 FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +++ +S++E  +++ ++  +  LA  LD P+  L +
Sbjct: 61 ISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSLFR 97


>gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM
          10507]
 gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM
          10507]
 gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 211

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 MPNELL 70


>gi|224825971|ref|ZP_03699074.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224601608|gb|EEG07788.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 188

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 32/73 (43%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + D   +  +    N R  R+    +Q ++    G ++  +  +E G S +++  +  LA
Sbjct: 1  MPDTPPQVLLDVSANLRQARQALGWSQDKLATAAGVSRRMLVNIEAGDSNVSLATLDRLA 60

Query: 71 HTLDTPLWKLLKP 83
            L     +L++P
Sbjct: 61 AALGLSFAELVRP 73


>gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 77

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R +  L+Q+++    G  QS I  +E       I  M  LA  L   + + 
Sbjct: 1  MVGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIERENRNPTIKTMKRLATALGVSIEEF 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum
          H-6-12]
 gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum
          H-6-12]
          Length = 105

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R  RK+  +  +++  +TG + S+IS +E G    ++  +  +A   + P
Sbjct: 3  VGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLP 57


>gi|138895235|ref|YP_001125688.1| PbsX family transcriptional regulator [Geobacillus
          thermodenitrificans NG80-2]
 gi|196248177|ref|ZP_03146878.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|134266748|gb|ABO66943.1| Transcriptional regulator PBSX family [Geobacillus
          thermodenitrificans NG80-2]
 gi|196211902|gb|EDY06660.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 67

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R +A LTQ+++  + G  +  IS +E GK    +   + + + L+  L ++ 
Sbjct: 3  NNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF 60


>gi|85713744|ref|ZP_01044734.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A]
 gi|85699648|gb|EAQ37515.1| probable transcriptional regulator [Nitrobacter sp. Nb-311A]
          Length = 86

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R +  L+Q+ +    G  +S++  LE G     ++ +  LA  L     +L
Sbjct: 6  LVAWNLRRLRVKRALSQEALAVDAGIDRSYVGRLERGVENPTVETLDKLATALQVAAAEL 65

Query: 81 L 81
          L
Sbjct: 66 L 66


>gi|315499432|ref|YP_004088235.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gi|315417444|gb|ADU14084.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 93

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +   N   +RK+A+L+Q+E+  R    AQ++IS LE GK       + ++A  L   + +
Sbjct: 6  LIGWNVSRLRKKAELSQEELALRVEVVAQTYISNLEAGKCNPTAVTLYLIARALSVNVSE 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|271962334|ref|YP_003336530.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505509|gb|ACZ83787.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 199

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R  R    L+ +E+   TG +++ IS++E G +   ++ +  LA +L+    
Sbjct: 22 RGAIAANLRRARLGRGLSVRELAELTGVSKALISQVERGVANPTVEVLSRLATSLELTFG 81

Query: 79 KLLK 82
          +L +
Sbjct: 82 ELTR 85


>gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis
          JCM 11548]
 gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis
          JCM 11548]
          Length = 528

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD---- 74
          +         +R+E  L+  E+  R G ++S + E+E G+   ++  +  +A+ L+    
Sbjct: 6  KRSVGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRVAPSVTTLWKIANALEVGFG 65

Query: 75 --TPLWKLL 81
             P W L+
Sbjct: 66 ALVPEWVLV 74


>gi|328543331|ref|YP_004303440.1| transcriptional regulator, XRE family [polymorphum gilvum
          SL003B-26A1]
 gi|326413077|gb|ADZ70140.1| Transcriptional regulator, XRE family [Polymorphum gilvum
          SL003B-26A1]
          Length = 61

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +  RKE  L+Q+ +   T   +++IS +E G    ++  ++ LA  L T    LL P
Sbjct: 1  MKAARKELDLSQEALALETEIDRTYISGIERGLRNPSLTLIVKLATALKTTPAALLNP 58


>gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          lactoaceticus 6A]
 gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 285

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R+E  LTQ+E+    G  +  IS  E G    + + +I +A      +  L
Sbjct: 1  MFPYRLKELREEKGLTQEELALMLGLKRQSISNYENGGRQPDYNTLIKIADFFGVTVDYL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|301053933|ref|YP_003792144.1| putative MerR family transcriptional regulator [Bacillus
          anthracis CI]
 gi|300376102|gb|ADK05006.1| possible transcriptional regulator, MerR family [Bacillus cereus
          biovar anthracis str. CI]
          Length = 186

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65


>gi|86607899|ref|YP_476661.1| transcriptional regulator PatB [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556441|gb|ABD01398.1| transcriptional regulator PatB [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 550

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 32/65 (49%)

Query: 9   PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           P         + +   +    R++  ++Q+E+  R G +QSW+ ++E G+  I++++   
Sbjct: 477 PENPKDFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQR 536

Query: 69  LAHTL 73
           L   L
Sbjct: 537 LIKAL 541


>gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612]
 gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612]
          Length = 67

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R+E  L Q ++  + G +Q+ ++ LETGK       ++ +A  LD  L  
Sbjct: 2  MTIGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETGKRNPGFTTIVKIAKVLDLNLED 61

Query: 80 L 80
          L
Sbjct: 62 L 62


>gi|262197947|ref|YP_003269156.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262081294|gb|ACY17263.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 187

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N + +R+   ++Q +I    G  +   S LE G     +  ++  A  L   L +L+
Sbjct: 13 LAHNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGNPTLSVLLRAAAALQVSLEELV 72

Query: 82 KP 83
           P
Sbjct: 73 AP 74


>gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA]
          Length = 183

 Score = 56.9 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ R ++ ++ +E+  R+G   S +S++E      +I  +  +A  LD P++K  
Sbjct: 6  LGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMFKFF 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|257486009|ref|ZP_05640050.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625938|ref|ZP_06458892.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289646848|ref|ZP_06478191.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320323588|gb|EFW79672.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328221|gb|EFW84225.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868810|gb|EGH03519.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330986067|gb|EGH84170.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331010372|gb|EGH90428.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 201

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|330974504|gb|EGH74570.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 199

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+  
Sbjct: 2  PTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSR 61

Query: 69 LAHTLDTPLWKLL 81
          L   L  P+ KL 
Sbjct: 62 LCDVLGMPMSKLF 74


>gi|83589153|ref|YP_429162.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572067|gb|ABC18619.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 74

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + IR    L+Q ++  ++G AQS+I ++E+G  +  +  +  LA  L+ P
Sbjct: 10 LKQIRASKNLSQYQLSKKSGVAQSYIHDIESGAKSPTLRTLEKLAAALEVP 60


>gi|284029961|ref|YP_003379892.1| SARP family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283809254|gb|ADB31093.1| transcriptional regulator, SARP family [Kribbella flavida DSM
          17836]
          Length = 1081

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-S 59
          MP R ++ P  +  +   R  F    R  R++A +TQ+ + +R G +   I +LE G+  
Sbjct: 1  MPGRSQEAPSGAGHVRTGR--FGELLRAFRRQAGITQRALADRAGLSAGAIRDLEQGRTR 58

Query: 60 TINIDNMIILAHTLD 74
          +   D++  LA  L 
Sbjct: 59 SPKADSVQALATALG 73


>gi|159044420|ref|YP_001533214.1| putative HTH-type transcriptional regulator [Dinoroseobacter
          shibae DFL 12]
 gi|157912180|gb|ABV93613.1| putative HTH-type transcriptional regulator [Dinoroseobacter
          shibae DFL 12]
          Length = 215

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R RD P     +           R  R+E   T  E+   TG +   +S++E G+++ 
Sbjct: 11 PHRLRDAP--DKTLEAA---IGRALRAFRREQGTTVVELSAATGLSTGMLSKIENGQTSP 65

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          ++  +  LA+ L  PL    +
Sbjct: 66 SLTTLQALANALSVPLTAFFR 86


>gi|331014513|gb|EGH94569.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
          Length = 201

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P+     L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPNEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
 gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces
          griseoaurantiacus M045]
          Length = 232

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +ETG+  + +D ++ LA  LDT L +L
Sbjct: 15 LVRRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRRRLALDQLVTLARALDTSLDQL 74

Query: 81 LK 82
          ++
Sbjct: 75 VE 76


>gi|213426090|ref|ZP_03358840.1| hypothetical protein SentesTyphi_10843 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213582495|ref|ZP_03364321.1| hypothetical protein SentesTyph_15373 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
 gi|213612462|ref|ZP_03370288.1| hypothetical protein SentesTyp_08142 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
 gi|213647358|ref|ZP_03377411.1| hypothetical protein SentesTy_08670 [Salmonella enterica subsp.
          enterica serovar Typhi str. J185]
 gi|213857431|ref|ZP_03384402.1| hypothetical protein SentesT_19934 [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 182

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|213160859|ref|ZP_03346569.1| hypothetical protein Salmoneentericaenterica_12733 [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
          Length = 181

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 6  VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 65

Query: 81 LKP 83
          L+P
Sbjct: 66 LEP 68


>gi|163760476|ref|ZP_02167558.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43]
 gi|162282427|gb|EDQ32716.1| hypothetical protein HPDFL43_04196 [Hoeflea phototrophica DFL-43]
          Length = 116

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           M R +  E      ++ E M   +  R  RK   +T  E+    G +Q  +S++E GK  
Sbjct: 35  MERVRAGEETWPSELVHELMETDSRIRTYRKYRGMTGSELAAAAGISQPHLSDIENGKKA 94

Query: 61  INIDNMIILAHTLDTPLWKLL 81
            ++D +  +A  L   L  L+
Sbjct: 95  GSVDVLKRIATALRVDLDDLV 115


>gi|153011646|ref|YP_001372860.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151563534|gb|ABS17031.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 88

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R     N R IR    +TQ+ +       ++ IS +ETG     ID +  LA  L   +
Sbjct: 3  ARTRIAWNLRQIRSSQGITQENLAVDANVDRTAISGIETGDYNPTIDLLERLAEALSVDI 62

Query: 78 WKLL 81
            L+
Sbjct: 63 VDLV 66


>gi|111019821|ref|YP_702793.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819351|gb|ABG94635.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 221

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 1  MPRRKRDEPHLS--DAILRER-------------MIFVNNFRNIRKEAKLTQKEIRNRTG 45
          M  R   E H    D    ER              +     R++RK + L+  ++  + G
Sbjct: 1  MTTRPETEVHRDTGDPAPVEREVPSDTPTGPDLEKVIARQVRSLRKASGLSVGDMAAKVG 60

Query: 46 FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +++ +S++E  +++ ++  +  LA  LD P+  L +
Sbjct: 61 ISKAMLSKIENSQTSCSLSTLARLAAGLDVPVTSLFR 97


>gi|237727408|ref|ZP_04557889.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229434264|gb|EEO44341.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 77

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK+A +TQ ++  + G  +S+IS +ETGK+   +     +A  L 
Sbjct: 17 GQIIEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68


>gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101]
 gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101]
          Length = 179

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R   +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L +  
Sbjct: 4  GDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTEFF 62


>gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13]
 gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 179

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R   +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L +  
Sbjct: 4  GDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTEFF 62


>gi|332521196|ref|ZP_08397654.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043289|gb|EGI79486.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 491

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + IR +  L+   +   +G ++S+++E+E GK     D + IL+  LD P  
Sbjct: 7  KLIFGLKLKQIRTDKDLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIAILSERLDVPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 118

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +++RK+  L+QKE+ +  G + S++S++E  +S  + D +  L   L+   
Sbjct: 10 GGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSNPSFDKLQRLCVVLNVQP 64


>gi|255307046|ref|ZP_05351217.1| putative regulatory protein [Clostridium difficile ATCC 43255]
          Length = 120

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R +  +TQ+ + N      S +S +ETGK+ +++  +I +A+ L   +  
Sbjct: 6  KAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDT 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|269798806|ref|YP_003312706.1| XRE family transcriptional regulator [Veillonella parvula DSM
          2008]
 gi|269095435|gb|ACZ25426.1| transcriptional regulator, XRE family [Veillonella parvula DSM
          2008]
          Length = 90

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+ K++   L D         + N    R  A +TQ ++   TG  QS IS++E G    
Sbjct: 15 PKFKKEWDALDDEYQ-----IIQNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGNP 69

Query: 62 NIDNMIILAHTLDTPL 77
          ++  +  +AH     L
Sbjct: 70 SLKTLQKIAHAFGKKL 85


>gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia
           stuttgartiensis]
          Length = 209

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + +RK  K+TQK++ NRTG + S +S++E G+   +++ +  L+ +L+  L   L
Sbjct: 138 VGKKLKFLRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLSASLNVKLSYFL 197

Query: 82  K 82
           +
Sbjct: 198 E 198


>gi|91217908|ref|ZP_01254861.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC
          700755]
 gi|91183885|gb|EAS70275.1| hypothetical protein P700755_01202 [Psychroflexus torquis ATCC
          700755]
          Length = 492

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + IR E KL+   +   +G ++S+++E+E GK     D +  L+  L+ P  
Sbjct: 7  KLIFGLKLKQIRTEKKLSLFGLSKLSGLSKSYLNEIENGKKYPKPDKIATLSEKLEVPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|328950250|ref|YP_004367585.1| helix-turn-helix domain protein [Marinithermus hydrothermalis DSM
          14884]
 gi|328450574|gb|AEB11475.1| helix-turn-helix domain protein [Marinithermus hydrothermalis DSM
          14884]
          Length = 130

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +RK+     K++   +G +  ++S+LE G++  +++ +  L+      +  
Sbjct: 1  MTLAERLRELRKDRGWRLKDLSQASGLSIPYLSDLERGRTNPSLETLQTLSRAYGISVHD 60

Query: 80 LLKP 83
          LL P
Sbjct: 61 LLAP 64


>gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus
          SK58]
 gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus
          SK58]
          Length = 476

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++RK+A LT  ++  RTG + S +S +E  +    +  +  +A  L  P+  LL
Sbjct: 6  LGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVEDLL 65

Query: 82 K 82
           
Sbjct: 66 T 66


>gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus
          RUH2202]
 gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus
          RUH2202]
          Length = 209

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ ++ G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 37 VGTNIRSLRDERGLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLSV 90


>gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 206

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  K D   + D + R         + +R+  ++T  ++ + TG + S +S LE G   
Sbjct: 1  MPNGKLDG--MDDTVERTLDAVGPRLKQLRQRREITLADLADETGISTSTLSRLEAGLRR 58

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            ++ ++ LA      L +L+
Sbjct: 59 PTLEQLLPLARAYGVSLDELV 79


>gi|284034787|ref|YP_003384718.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283814080|gb|ADB35919.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 119

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  N FR +R+E  +T +E+      +  ++SE+E G+   + + +  +   LD  L 
Sbjct: 4  RQVIGNVFRRLRRERGITLRELAELAQVSVPYLSEIERGRKEPSSEILAAICRALDLELS 63

Query: 79 KLL 81
           LL
Sbjct: 64 DLL 66


>gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 200

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK   LTQ+++      +++ +S+ E+G+   +ID++  ++      + +L+
Sbjct: 3  FGEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRGYPSIDSLKEVSRFFSVTIDELI 62

Query: 82 KP 83
           P
Sbjct: 63 SP 64


>gi|154500601|ref|ZP_02038639.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC
          29799]
 gi|150270490|gb|EDM97799.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC
          29799]
          Length = 75

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N    RKE  L+Q  +  R   +++ +S +ET    +++D +  +   L+ P  K
Sbjct: 10 KYLGLNIAYYRKERGLSQSRLAERINVSRTHMSRIETADCAVSLDVVFAICDALEVPPEK 69

Query: 80 LL 81
          L 
Sbjct: 70 LF 71


>gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
 gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
          Length = 177

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T + +  
Sbjct: 4  GAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEFF 62


>gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum
          WAL-14163]
 gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum
          WAL-14163]
          Length = 177

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R   ++ +IS+LE   ++ +I  ++ +   L T + +  
Sbjct: 4  GAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGEFF 62


>gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1]
 gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1]
          Length = 183

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ ++ G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 11 VGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64


>gi|229196651|ref|ZP_04323395.1| hypothetical protein bcere0001_22090 [Bacillus cereus m1293]
 gi|228587007|gb|EEK45081.1| hypothetical protein bcere0001_22090 [Bacillus cereus m1293]
          Length = 185

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 110

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  L+Q+ +    G ++  +++ E+ KS   +D ++ L++     + KLL
Sbjct: 6  FNEKLQGLRKEKGLSQEGLAELVGVSRQSVAKWESKKSYPEVDKLVQLSNVFGVSIDKLL 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|226952353|ref|ZP_03822817.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226836905|gb|EEH69288.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 72

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN R E K+TQ+ +  + G  +S++  +E G+  I ++ +  +A  L     +LL
Sbjct: 9  GQLIRNKRLELKITQESLALQCGIDRSYVGRIERGEVNITVEKLYEIAEILKINPQELL 67


>gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 114

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    + +RK   LTQ E+      +QS I   ETG+   +I+ +  +A   +  L  L
Sbjct: 3  IFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVL 62

Query: 81 L 81
          +
Sbjct: 63 V 63


>gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM
          13275]
 gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM
          13275]
          Length = 181

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +M      + +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L 
Sbjct: 2  KMEIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLK 61

Query: 79 KLL 81
          +  
Sbjct: 62 EFF 64


>gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 208

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+  E+  R+G  ++ +S LE+G     ++ +  L   L  PL   L
Sbjct: 15 VGLRLRELRVARGLSLSELARRSGVGKATLSGLESGTRNPTLETLYALTTALGLPLSAAL 74

Query: 82 K 82
          +
Sbjct: 75 Q 75


>gi|91975357|ref|YP_568016.1| anaerobic benzoate catabolism transcriptional regulator
          [Rhodopseudomonas palustris BisB5]
 gi|91681813|gb|ABE38115.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Rhodopseudomonas palustris BisB5]
          Length = 317

 Score = 56.9 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    +++K +   +G ++ +I++LE+GK  ++I  +  ++  L TPL  LL
Sbjct: 27 LGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLEDLL 86


>gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601]
 gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601]
          Length = 180

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I  +  +   L +  
Sbjct: 4  GKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIVTLFDILEVLGSSP 58


>gi|333028514|ref|ZP_08456578.1| putative transcriptional regulatory protein [Streptomyces sp.
          Tu6071]
 gi|332748366|gb|EGJ78807.1| putative transcriptional regulatory protein [Streptomyces sp.
          Tu6071]
          Length = 212

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PR +R  P    A L        N R+ R E   T   +  R G ++  I ++E  ++  
Sbjct: 12 PRWRRWRPVADLAALT--RTLARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNP 69

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          ++  ++ +A  L   +  LL
Sbjct: 70 SLGTVVKVADALGVSIPTLL 89


>gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 192

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA+ LDT L +L
Sbjct: 11 LVRKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQLVTLANALDTTLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 179

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  F  N + +R+E  L+QK+     G +   IS  E+G  + +ID +  +A T    
Sbjct: 10 TAKNNFATNLKELRQEHSLSQKDFGASIGISAMAISSYESGTKSPSIDTVCRIAETYHVS 69

Query: 77 LWKL 80
          +  L
Sbjct: 70 IDWL 73


>gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 121

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            ++ IF     R+ RKE +LTQ+E+ +++G A   I ++E G+     + + +L   L 
Sbjct: 2  PEDKFIFLGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKNPTYETLCLLVDRLG 61

Query: 75 TP 76
            
Sbjct: 62 IS 63


>gi|229818666|ref|YP_002880192.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229564579|gb|ACQ78430.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 201

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 37/74 (50%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E    +       +  +  R++R++  LT +++  +TG + + +S++E G++  +I ++ 
Sbjct: 11 EHVHRNETSPGGHVLGDRLRDLRRQHGLTLRDVAGQTGLSVALLSQIENGRTDPSITSLR 70

Query: 68 ILAHTLDTPLWKLL 81
           LA   D  +  L 
Sbjct: 71 KLARAFDAEVATLF 84


>gi|256419691|ref|YP_003120344.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256034599|gb|ACU58143.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 74

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 31/53 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+   ++Q+E+    G  ++++  +E G+  + I N+I LA +L+T    LL+
Sbjct: 19 RQALGMSQEELALEAGLDRTYVGGIERGERNVAILNLIKLAKSLNTTPSTLLE 71


>gi|139438088|ref|ZP_01771641.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC
          25986]
 gi|133776285|gb|EBA40105.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC
          25986]
          Length = 275

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F      +R+   LTQ+++  +    +  +S  E G+ T  ID M ++A     PL  
Sbjct: 1  MAFAEKLIAVRRAHHLTQEQLATKLFVTRQAVSRWERGEVTPGIDMMKLIAAVTGEPLPH 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
 gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE   + +E+        S +S++E G +  +I  + +LA  LD P 
Sbjct: 33 ENIDIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKVLAKALDVPT 92

Query: 78 WKLL 81
          +  L
Sbjct: 93 FSFL 96


>gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 106

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             + +     R +RK  +L+Q+++  + G     IS +E GKS  ++D +  +A  L  
Sbjct: 2  QTAKQLLGLRIREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQV 61

Query: 76 PLWKLL 81
           +  L 
Sbjct: 62 EIKDLF 67


>gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein
          [Roseovarius sp. TM1035]
 gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein
          [Roseovarius sp. TM1035]
          Length = 129

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R  R E  L Q+++  + G   S IS  E G    + DN+  LA +LD     L
Sbjct: 22 LFGRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGARKPSFDNLRNLAKSLDVTTDYL 81

Query: 81 L 81
          L
Sbjct: 82 L 82


>gi|90020360|ref|YP_526187.1| ribulose-phosphate 3-epimerase [Saccharophagus degradans 2-40]
 gi|89949960|gb|ABD79975.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 81

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 8  EPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
            +       E+++     N + +R + KL+Q+++     F  ++IS +E  +  + I  
Sbjct: 3  TKNDDKRKPSEQILSVLAKNVKTLRVKRKLSQEQLGELCDFHPTFISMMERKQRNVTIST 62

Query: 66 MIILAHTLDTPLWKLL 81
          + I+A  L+   ++LL
Sbjct: 63 LEIVARALEVEAFQLL 78


>gi|323463421|gb|ADX75574.1| transcriptional regulator, putative [Staphylococcus
          pseudintermedius ED99]
          Length = 182

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +  R+  +L+  +I   TG +++ IS++E G +  +I+ +  +A+ L  PL  L
Sbjct: 7  VVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPLTSL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|319893529|ref|YP_004150404.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03]
 gi|317163225|gb|ADV06768.1| DNA-binding protein [Staphylococcus pseudintermedius HKU10-03]
          Length = 182

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +  R+  +L+  +I   TG +++ IS++E G +  +I+ +  +A+ L  PL  L
Sbjct: 7  VVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGVANPSINTLWKIANGLRIPLTSL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44]
 gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44]
          Length = 181

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     + +RKE KLT K+I ++T  + S++S++E  KS+I ++++  ++  L    
Sbjct: 4  LIGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESLKKISEALGVNP 60


>gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum
          reducens MI-1]
 gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1]
          Length = 255

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R+E   T +++  R   + S++SE+E G    ++  +  LA  L+    +L++
Sbjct: 5  GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVSKTQLVE 64



 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R IR E  L+ +E+ ++ G + S++SE+E G     ++ +  +A  L  P   L+
Sbjct: 74  LGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVPATALM 133



 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                +++R+E  LTQ ++ N  G     I ++E GK   ++  +  L+  +    
Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSP 194


>gi|325528329|gb|EGD05485.1| putative DNA-binding protein [Burkholderia sp. TJI49]
          Length = 109

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          KR  P  +       +      +  R  A+ +Q+ +       +++IS +E G +  +I+
Sbjct: 4  KRSIPSATRPAPIS-IALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIE 62

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  + ++L+  L +L  P
Sbjct: 63 TLANICYSLNVTLAELFAP 81


>gi|298487379|ref|ZP_07005426.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
 gi|298158064|gb|EFH99137.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
          Length = 201

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 199

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +RK   LT +E+  R    +S++S+LE G S+  I  ++ LA  LD  + +L+
Sbjct: 17 AERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLAEALDVTVDQLI 75


>gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 80

 Score = 56.9 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRK+  L+Q+++    G   S++  +E G +  ++  +  +A  L   +  L+
Sbjct: 16 LGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNASVLALHYIAEALGMTMTALM 75

Query: 82 K 82
           
Sbjct: 76 T 76


>gi|299537075|ref|ZP_07050378.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298727316|gb|EFI67888.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 183

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R IRK  +++ +E+   +  ++  + ++E G++   ++ +  +   L+ PL  LL
Sbjct: 12 VGGNLREIRKSKRMSLEELAKVSNVSKLTLGKIERGETNPTVNILWKICRGLNIPLVALL 71


>gi|153930626|ref|YP_001393241.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP
          31758]
 gi|152958170|gb|ABS45633.1| conjugal transfer protein TrbA [Yersinia pseudotuberculosis IP
          31758]
          Length = 122

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N   I +E  +T+ E+   +G + S++S+L  GK+  ++  M  +A  LDTPL  
Sbjct: 4  LILFTNILRILEERGMTKSELHEVSGVSISFLSDLTNGKANPSLKVMEAIADALDTPLPI 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLE 66


>gi|329848110|ref|ZP_08263138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
 gi|328843173|gb|EGF92742.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
          Length = 261

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F  + ++ R   +++Q ++    G +Q  +S +ETG+S  + D +I LA  LD PL +
Sbjct: 5  FGEHLKHWRARRRISQLDLALDAGISQKHLSFVETGRSVPSRDMVIRLAEVLDMPLRE 62


>gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
           SP1PR4]
 gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 178

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 5   KRDEPHLSDAILRER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
                 +  A+ RE   +   +  R++R    L+Q+++  R G  +++IS++E GK+   
Sbjct: 47  PVTLAVVPTALPREDSGLQVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKAMPT 106

Query: 63  IDNMIILAHTLDTPLWKLLK 82
           I ++  LA  L   +  LL+
Sbjct: 107 IGSLERLARALQVDISDLLR 126


>gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551]
 gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551]
          Length = 181

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RK   L+ +E+        S +S++E G +  +I  + ILA  LD P 
Sbjct: 2  ENIDIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKILAKCLDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|300770604|ref|ZP_07080483.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763080|gb|EFK59897.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 96

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 33/61 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R+  K++Q+ +  +   +Q+  S++E G++ + +D +  +AH     +++LL 
Sbjct: 4  GEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISVYELLP 63

Query: 83 P 83
          P
Sbjct: 64 P 64


>gi|229173113|ref|ZP_04300664.1| Transcriptional regulator, XRE [Bacillus cereus MM3]
 gi|228610446|gb|EEK67717.1| Transcriptional regulator, XRE [Bacillus cereus MM3]
          Length = 186

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 65


>gi|227539099|ref|ZP_03969148.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium
          spiritivorum ATCC 33300]
 gi|227241049|gb|EEI91064.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium
          spiritivorum ATCC 33300]
          Length = 96

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 33/61 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R+  K++Q+ +  +   +Q+  S++E G++ + +D +  +AH     +++LL 
Sbjct: 4  GEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISVYELLP 63

Query: 83 P 83
          P
Sbjct: 64 P 64


>gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437]
          Length = 184

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +R E   T K +  RTG + S++S++E G S++ I ++  +A  L  P+ +  +
Sbjct: 11 QEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSSSLAITSLKKIADALGVPITRFFE 69


>gi|159044104|ref|YP_001532898.1| putative transcriptional regulator [Dinoroseobacter shibae DFL
          12]
 gi|157911864|gb|ABV93297.1| putative transcriptional regulator [Dinoroseobacter shibae DFL
          12]
          Length = 208

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P   R      D I  E +   +  R++RK    T ++   + G A+S +S++E G+ + 
Sbjct: 8  PSLIRLHRESGDTIPVEPLNLGSRVRDLRKARNWTLEQAAGQAGLARSTLSKIENGQMSP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
            + +  LA  L+  + +L  P
Sbjct: 68 TYEALKKLADGLEITIPQLFTP 89


>gi|71736183|ref|YP_275333.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71556736|gb|AAZ35947.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 189

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  +A  L+     L+
Sbjct: 15 VSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLI 74

Query: 82 K 82
          +
Sbjct: 75 Q 75


>gi|291537143|emb|CBL10255.1| Predicted transcriptional regulators [Roseburia intestinalis
          M50/1]
          Length = 86

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTL 73
           +E  +   N    RK   ++Q ++    G +++ +S +E     ++++++ ++ +A  L
Sbjct: 6  EQEFKMIGLNIAYFRKLKGISQMKLAETIGISRTHMSNIEAPNMPTSVSLETLMDIADAL 65

Query: 74 DTPLWKLL 81
          D P + LL
Sbjct: 66 DIPAYVLL 73


>gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 81

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 31/64 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +      + +RK   ++Q+E+ +R+   +S++S +E G     +  ++ +A  L   
Sbjct: 12 PALLALGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQNPGVMTVVQIAAGLGVS 71

Query: 77 LWKL 80
          + +L
Sbjct: 72 VAEL 75


>gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1]
 gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1]
 gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1]
 gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [butyrate-producing bacterium SSC/2]
 gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1]
          Length = 223

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4]
 gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4]
          Length = 226

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           I   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 51  IIAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGNPSVETLWALGVALDVPFSRL 110

Query: 81  LKP 83
           ++P
Sbjct: 111 VEP 113


>gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11]
 gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11]
          Length = 189

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +      + R +RK   LT  ++  R G +  W+S++E  KS  +I ++  +A  LD P
Sbjct: 6  PQPATLGADLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLRAIAKCLDVP 65

Query: 77 LWKLL 81
          +  L 
Sbjct: 66 MSMLF 70


>gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus
          ATCC 12755]
 gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus
          ATCC 12755]
          Length = 293

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 ++ R    LTQKE+  R   +   IS+ E G    +I+ ++ LA  L TP+ +
Sbjct: 3  ETLSKKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEE 62

Query: 80 LLK 82
          LLK
Sbjct: 63 LLK 65


>gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
 gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
          Length = 198

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R      L++    E+ +     R +R+E  L+  ++    G +Q  IS++E G  + ++
Sbjct: 3  RTASNAPLAEERPLEKAL-GYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSL 61

Query: 64 DNMIILAHTLDTPLWKLLK 82
           ++  +A  L+ P+  L  
Sbjct: 62 ASINAIASALNVPITGLFT 80


>gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          03BB108]
 gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          03BB108]
          Length = 114

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    + +RK   LTQ E+      +QS I   ETG+   +I+ +  +A   +  L  L
Sbjct: 3  IFGQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVL 62

Query: 81 L 81
          +
Sbjct: 63 V 63


>gi|158314482|ref|YP_001506990.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158109887|gb|ABW12084.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 80

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R E   +Q+++ + +G   +++ ++E G+  I++ N++ LA  L+    +L+
Sbjct: 13 FRERVRARRHELGKSQEQLADDSGLHWTFVGQVERGRRNISLHNILKLAGALEIDPAELV 72

Query: 82 K 82
          +
Sbjct: 73 R 73


>gi|302186628|ref|ZP_07263301.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae 642]
          Length = 189

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 29/67 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                   N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  +A  L  
Sbjct: 9  PPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALQV 68

Query: 76 PLWKLLK 82
              L++
Sbjct: 69 AFSDLIQ 75


>gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis
          BCW-1]
          Length = 190

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R+G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor
          [Ketogulonicigenium vulgare Y25]
 gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor
          [Ketogulonicigenium vulgare Y25]
          Length = 214

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 36/64 (56%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R ++ +  R +RK+  LT +++ +R G +  ++S+LE  K+  ++ ++  LA  L   +
Sbjct: 25 DRPVYGSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVLQVDI 84

Query: 78 WKLL 81
             +
Sbjct: 85 DHFI 88


>gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150]
 gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150]
          Length = 159

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+   N + +RK  +LTQ E+ N  G +++ +S  E G S I+ + +  +  TL+     
Sbjct: 1  MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|332827315|gb|EGK00080.1| hypothetical protein HMPREF9455_03604 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 72

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 37/59 (62%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + IR+E K++Q E+  R  + +S +S +E+GK+ + I  ++ +A +LDT +  ++
Sbjct: 11 GKNIKKIREEKKISQAELAARCNYEKSNMSRIESGKTNLTIGTLLNIAESLDTTIIHIV 69


>gi|320327981|gb|EFW83986.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330875480|gb|EGH09629.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 189

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  +A  L+     L+
Sbjct: 15 VSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLI 74

Query: 82 K 82
          +
Sbjct: 75 Q 75


>gi|299143941|ref|ZP_07037021.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral
          taxon 386 str. F0131]
 gi|298518426|gb|EFI42165.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral
          taxon 386 str. F0131]
          Length = 178

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R +  LTQ+E+ +R+   + +IS++E   ++ ++  +I +   L T   +  +
Sbjct: 4  GNKLKNLRVKQALTQEELADRSELTKGFISQVERNLTSPSVATLIDILEALGTTPLEFFE 63


>gi|221195296|ref|ZP_03568352.1| transcriptional regulator [Atopobium rimae ATCC 49626]
 gi|221185199|gb|EEE17590.1| transcriptional regulator [Atopobium rimae ATCC 49626]
          Length = 142

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N   +RK    +Q+E+ +  G ++  +S+ ETG+S  +I+    LA+     +  
Sbjct: 1  MSFAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKHLANVFGVTIDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|94984444|ref|YP_603808.1| XRE family transcriptional regulator [Deinococcus geothermalis
          DSM 11300]
 gi|94554725|gb|ABF44639.1| transcriptional regulator, XRE family [Deinococcus geothermalis
          DSM 11300]
          Length = 140

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +M      R +R E  L  K++    G +  ++S+LE G++  +++ +  LA      + 
Sbjct: 11 KMKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLETLQTLAGAYSITVH 70

Query: 79 KLLK 82
           LL+
Sbjct: 71 DLLE 74


>gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 182

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP   R            R         +R    ++   +    G  +  +SELE+G+  
Sbjct: 1  MPSTGRRSAED------RRTAIGARITELRTARSMSLSALARAAGIGKGSLSELESGQRN 54

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            ID +  +A  L  PL  LL
Sbjct: 55 PTIDTLYAVAGPLGVPLSALL 75


>gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei
          subsp. wolfei str. Goettingen]
 gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas
          wolfei subsp. wolfei str. Goettingen]
          Length = 359

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +RKE  ++Q  +  R G     IS+ E+G  + + +++I L+  L  P   
Sbjct: 1  MTISERINKLRKERNMSQALLAERAGLKAPAISQYESGARSPSFESLIKLSSALGVPSDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 200

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R E  ++  E+  R+G A+  +S+LE+G     I+ +  L++ L  P+  L
Sbjct: 13 VLGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSAL 72

Query: 81 L 81
          L
Sbjct: 73 L 73


>gi|257484651|ref|ZP_05638692.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323844|gb|EFW79928.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|330888838|gb|EGH21499.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330986306|gb|EGH84409.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
 gi|331011269|gb|EGH91325.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 189

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  +A  L+     L+
Sbjct: 15 VSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDRVAEALEVAFSDLI 74

Query: 82 K 82
          +
Sbjct: 75 Q 75


>gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC
           29799]
 gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC
           29799]
          Length = 155

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 15  ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +++ ++      +  R+E+ LTQKE+ ++    ++ +S  E GKS  +++ ++ LA+   
Sbjct: 46  VMKRKIAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYG 105

Query: 75  TPLWKLL 81
             L  L+
Sbjct: 106 VSLDYLM 112


>gi|225175746|ref|ZP_03729739.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168670|gb|EEG77471.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 406

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 32/70 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  +  +   N R +R+E  L+Q E+ +  G ++     +E+G S   +  +  +A  +
Sbjct: 22 VVKMDHKMISINLRRVREEKGLSQSEVAHLAGISRVAYGRIESGASIPKVSTLQNIADGI 81

Query: 74 DTPLWKLLKP 83
          D  L  L  P
Sbjct: 82 DIKLQDLFVP 91


>gi|91206191|ref|YP_538546.1| Phage-related transcriptional regulator [Rickettsia bellii
           RML369-C]
 gi|157827799|ref|YP_001496863.1| Phage-related transcriptional regulator [Rickettsia bellii OSU
           85-389]
 gi|91069735|gb|ABE05457.1| Phage-related transcriptional regulator [Rickettsia bellii
           RML369-C]
 gi|157803103|gb|ABV79826.1| Phage-related transcriptional regulator [Rickettsia bellii OSU
           85-389]
          Length = 120

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 16  LRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L ++++   N  +  R+   L+Q+++  + G  + +IS +E G  T  ID +  L+  L+
Sbjct: 55  LVQKILSGENPIKVYREYRGLSQEQLATKIGKTKQYISAIEKGSRTGTIDTLKKLSTVLN 114

Query: 75  TPLWKL 80
             L  L
Sbjct: 115 IDLDML 120


>gi|159899272|ref|YP_001545519.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159892311|gb|ABX05391.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 81

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +++R    ++Q+E+  +  + +++IS+LE G     +  +  LAH L     + +
Sbjct: 5  FAVVLKDLRVSLGISQEELGFKANYHRTYISQLERGLKIPTLTTVFELAHVLKITPAEFI 64

Query: 82 K 82
          +
Sbjct: 65 E 65


>gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3]
 gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 192

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  L+ +++  R G  +S++S++E G ST ++   + LA  L   + +L 
Sbjct: 5  RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLATALHVEVGQLF 61


>gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 254

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           ER I   N R +R +  LT  E+  R+G + + IS++E    + ++  +  LA TLD P+
Sbjct: 65  ERAIAG-NVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVPV 123

Query: 78  WKLLK 82
             L +
Sbjct: 124 TSLFR 128


>gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 67

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       +  R +  +TQ+E     G + + ++  ETGK  + +D +  +A  L     
Sbjct: 5  KKQVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETGKQNLTLDTLEKVAAALGMAPK 64

Query: 79 KLL 81
            L
Sbjct: 65 SFL 67


>gi|160937081|ref|ZP_02084444.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439982|gb|EDP17730.1| hypothetical protein CLOBOL_01970 [Clostridium bolteae ATCC
          BAA-613]
          Length = 119

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + ++TQ+++   TG +   IS +ETG + +++ ++I +A+ L+     
Sbjct: 6  KAIGKRIKIQRIQREMTQEKLAELTGLSNPHISNVETGSTQVSLKSLIAIANALEITPDV 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|222109146|ref|YP_002551411.1| hypothetical transcription regulator protein [Agrobacterium vitis
          S4]
 gi|221738420|gb|ACM39285.1| hypothetical transcription regulator protein [Agrobacterium vitis
          S4]
          Length = 88

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N + +R    ++Q+ +       +  IS++E  +    +D++  +A  L  P+ 
Sbjct: 5  RELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALGVPIT 64

Query: 79 KLLK 82
           L K
Sbjct: 65 DLFK 68


>gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787]
 gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787]
          Length = 223

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ ++ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|194467035|ref|ZP_03073022.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454071|gb|EDX42968.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 115

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
               N    R + K+TQ+++   +  + ++IS++E G +  I+   +  LA  L+ P+ 
Sbjct: 3  KTIGKNITTRRHQLKMTQEQLAELSNLSVNYISKIERGTTPNISAKTLYRLAKGLNVPME 62

Query: 79 KLLK 82
           LLK
Sbjct: 63 NLLK 66


>gi|229030114|ref|ZP_04186176.1| Transcriptional regulator, XRE [Bacillus cereus AH1271]
 gi|228731172|gb|EEL82092.1| Transcriptional regulator, XRE [Bacillus cereus AH1271]
          Length = 197

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 17 LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGYANPSLSVLELIAKALNVPLFTLF 76


>gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii
           SL3/3]
          Length = 112

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       +  R + K+TQ+ +    G ++  +S+ E G S  +  N+  LA      + 
Sbjct: 46  RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSVE 105

Query: 79  KLLK 82
           +LLK
Sbjct: 106 ELLK 109


>gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 112

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       +  R + K+TQ+ +    G ++  +S+ E G S  +  N+  LA      + 
Sbjct: 46  RKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSVE 105

Query: 79  KLLK 82
           +LLK
Sbjct: 106 ELLK 109


>gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC
          27750]
 gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC
          27750]
          Length = 217

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E KLTQ+++    G ++  IS  E  KS  +I ++I ++   D  L  LLK
Sbjct: 6  GCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65


>gi|169334705|ref|ZP_02861898.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257443|gb|EDS71409.1| hypothetical protein ANASTE_01108 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 125

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK+ K +Q ++  +   +   IS++E G S  ++  ++ + + LD  + +LL
Sbjct: 9  LGKQIKKYRKQKKYSQSDLAEKIDKSVQHISKIERGISKASLQTLVDITNALDISMDELL 68


>gi|158424413|ref|YP_001525705.1| XRE family-like protein [Azorhizobium caulinodans ORS 571]
 gi|158331302|dbj|BAF88787.1| helix-turn-helix XRE-family like protein [Azorhizobium
          caulinodans ORS 571]
          Length = 216

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA   +R+    N R +R+E  +T   +   +   + ++S +E G  T +I  ++ +A  
Sbjct: 21 DASNADRL--GPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATA 78

Query: 73 LDTPLWKLL 81
          L   + +L 
Sbjct: 79 LGVNIAQLF 87


>gi|254245401|ref|ZP_04938722.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia
          PC184]
 gi|124870177|gb|EAY61893.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia
          PC184]
          Length = 216

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 4  RKRDEPHLS-DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R R    L  D  +   +   N  R +R+  KLT  E     G ++ ++S++E G++T +
Sbjct: 21 RFRSSMVLPPDESVLVAVSLGNKIRALRQRLKLTLDEAATTAGISKPFLSQVERGRATPS 80

Query: 63 IDNMIILAHTLDTPL 77
          I +++ +A  L   +
Sbjct: 81 ITSLVRIAKALGVTM 95


>gi|15673253|ref|NP_267427.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|12724246|gb|AAK05369.1|AE006359_7 transcriptional regulator [Lactococcus lactis subsp. lactis
          Il1403]
 gi|326406810|gb|ADZ63881.1| transcriptional repressor [Lactococcus lactis subsp. lactis CV56]
          Length = 252

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + +RK AKLTQ ++  + G  Q+     E   +   ++ +  LA   D P+ +L+
Sbjct: 3  FGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068]
 gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM
          6068]
          Length = 183

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +      R +R  A LT +E+  +TG  +  IS++E  + T ++  +  +A         
Sbjct: 4  LQLSQRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVTPSLPTLAKIAEAFGVSTAD 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|229017769|ref|ZP_04174656.1| hypothetical protein bcere0030_23120 [Bacillus cereus AH1273]
 gi|229023991|ref|ZP_04180470.1| hypothetical protein bcere0029_23160 [Bacillus cereus AH1272]
 gi|228737323|gb|EEL87839.1| hypothetical protein bcere0029_23160 [Bacillus cereus AH1272]
 gi|228743534|gb|EEL93647.1| hypothetical protein bcere0030_23120 [Bacillus cereus AH1273]
          Length = 185

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVAQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|205375367|ref|ZP_03228157.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4]
          Length = 111

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +  N  R +R+E KLT +E+  R+  ++S+IS +E G +   +I  ++ +A TL   L  
Sbjct: 1  MVGNRIRMLREERKLTMQELAVRSKVSKSYISSIERGLQKNPSIRILLRIADTLHVELED 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|163761211|ref|ZP_02168287.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea
          phototrophica DFL-43]
 gi|162281550|gb|EDQ31845.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea
          phototrophica DFL-43]
          Length = 203

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R+ +               F    R +R +A LT + + +++G +  ++S++E  K+T +
Sbjct: 6  RQPQPSRPADPVSPPA---FGERIREMRHKAGLTLQTLADQSGISVGFLSQVERDKATPS 62

Query: 63 IDNMIILAHTLDT 75
          +  +  +A  L  
Sbjct: 63 LGTLASVAAALGV 75


>gi|170740636|ref|YP_001769291.1| anaerobic benzoate catabolism transcriptional regulator
           [Methylobacterium sp. 4-46]
 gi|168194910|gb|ACA16857.1| transcriptional regulator, XRE family with shikimate kinase
           activity [Methylobacterium sp. 4-46]
          Length = 328

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R  R    +++K + + +G ++ +I++LETG   ++I  +  +AH +  PL  L+
Sbjct: 45  LGQRVRTARAVRAMSRKALSHSSGLSERYIAQLETGHGNVSIILLRRVAHAIGVPLEDLI 104

Query: 82  KP 83
            P
Sbjct: 105 AP 106


>gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium
          periodonticum ATCC 33693]
 gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium
          periodonticum ATCC 33693]
          Length = 184

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|157370058|ref|YP_001478047.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157321822|gb|ABV40919.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 191

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N R  R++A L+Q  +  ++  ++  ++ +E G   +++  +  LA  L+     L++
Sbjct: 21 SNLRGYRQQAGLSQVALAEKSDVSRRMLAGIEAGDRNVSLAVLDKLADALNISFTDLIQ 79


>gi|58616432|ref|YP_195561.1| TrbA protein of DNA transfer system [Azoarcus sp. EbN1]
 gi|56315894|emb|CAI10537.1| TrbA protein of DNA transfer system [Aromatoleum aromaticum EbN1]
          Length = 120

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   +  E  +T++E+ +++G + S++S++ TGK   ++  M  +A  L TPL  L
Sbjct: 5  IFFTNMLRLLDELHMTKQELADKSGVSISFLSDITTGKGNPSLKVMEDIAKALQTPLPLL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|262370712|ref|ZP_06064037.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314512|gb|EEY95554.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 182

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R+ R    L+Q+++ +  G ++  ++ +E+G+  I++  + ++A  L+    +++
Sbjct: 10 VSQNVRHYRSLKGLSQQQLADLAGLSRRMVAGVESGQDNISLAKLSLIADVLEVDFVQII 69


>gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 207

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R IR+ A L+   +   +G A+  +S+LE+G     I+ +  L++TL  P+  LL
Sbjct: 10 LAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVSSLL 69

Query: 82 K 82
           
Sbjct: 70 T 70


>gi|166033247|ref|ZP_02236076.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC
          27755]
 gi|166027604|gb|EDR46361.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC
          27755]
          Length = 354

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   F      IRKE K+TQ E+  +       IS  E G    +I  +  LA  L   +
Sbjct: 2  EAKQFGQFIAGIRKEKKMTQAELAEKIHVTDKAISRWERGLGFPDIQTLEPLAQVLGISV 61

Query: 78 WKLLK 82
           +L++
Sbjct: 62 LELMR 66


>gi|75674859|ref|YP_317280.1| XRE family transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74419729|gb|ABA03928.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi
           Nb-255]
          Length = 259

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           I   N R IR    L+ + +  ++G +++ + ++ETGKST  I  +  +  +L  P   L
Sbjct: 77  IVGKNLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFASL 136

Query: 81  L 81
           +
Sbjct: 137 I 137


>gi|229069943|ref|ZP_04203222.1| hypothetical protein bcere0025_21430 [Bacillus cereus F65185]
 gi|228713189|gb|EEL65085.1| hypothetical protein bcere0025_21430 [Bacillus cereus F65185]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|229079609|ref|ZP_04212144.1| hypothetical protein bcere0023_22630 [Bacillus cereus Rock4-2]
 gi|228703701|gb|EEL56152.1| hypothetical protein bcere0023_22630 [Bacillus cereus Rock4-2]
          Length = 190

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 10 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 69

Query: 79 KLL 81
           L+
Sbjct: 70 SLI 72


>gi|229104520|ref|ZP_04235186.1| hypothetical protein bcere0019_36660 [Bacillus cereus Rock3-28]
 gi|228678856|gb|EEL33067.1| hypothetical protein bcere0019_36660 [Bacillus cereus Rock3-28]
          Length = 190

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 10 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 69

Query: 79 KLL 81
           L+
Sbjct: 70 SLI 72


>gi|229139131|ref|ZP_04267708.1| hypothetical protein bcere0013_22440 [Bacillus cereus BDRD-ST26]
 gi|228644486|gb|EEL00741.1| hypothetical protein bcere0013_22440 [Bacillus cereus BDRD-ST26]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|229156016|ref|ZP_04284117.1| hypothetical protein bcere0010_22060 [Bacillus cereus ATCC 4342]
 gi|228627623|gb|EEK84349.1| hypothetical protein bcere0010_22060 [Bacillus cereus ATCC 4342]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|118477836|ref|YP_894987.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|228946049|ref|ZP_04108387.1| hypothetical protein bthur0007_21990 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|118417061|gb|ABK85480.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|228813637|gb|EEM59920.1| hypothetical protein bthur0007_21990 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|17545878|ref|NP_519280.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428173|emb|CAD14861.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 182

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T + +  RTG  +S++S++E G S  +I   + LA  L  P   L 
Sbjct: 4  RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF 60


>gi|228952792|ref|ZP_04114863.1| hypothetical protein bthur0006_21880 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228806889|gb|EEM53437.1| hypothetical protein bthur0006_21880 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 37/63 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|217958091|ref|YP_002336635.1| hypothetical protein BCAH187_A0631 [Bacillus cereus AH187]
 gi|217068076|gb|ACJ82326.1| conserved domain protein [Bacillus cereus AH187]
          Length = 73

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    +RK+  +TQ+E+  + G  ++++S LE GK   ++D  + ++  L + + K+ K
Sbjct: 2  NQITKLRKQKAITQEELAVKVGITRAYLSNLENGKHKPSLDVALKISEVLGSSVEKIFK 60


>gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM]
 gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus
           ATCC 4796]
 gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM]
 gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus
           ATCC 4796]
          Length = 174

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             I   RM        +R +   +Q+E+  +   ++  +S+ E+G++  ++D +I L+  
Sbjct: 35  KTIEVIRMSLNQKIAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAKPDLDKIIALSDI 94

Query: 73  LDTPLWKLLK 82
            D     LLK
Sbjct: 95  FDVSTDYLLK 104


>gi|257792947|ref|YP_003186346.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479639|gb|ACV59957.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 223

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    R +RKE  LT  ++   +G + + IS +E G+      D +  LA  L  P   L
Sbjct: 4  FGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPYEDL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|226355114|ref|YP_002784854.1| XRE family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226317104|gb|ACO45100.1| putative Transcriptional regulator, XRE family [Deinococcus
          deserti VCD115]
          Length = 80

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 1  MPRRKRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP RK   P  +D +++E R+      R +R    + Q E     G  ++   +LE  + 
Sbjct: 1  MPARK---PQPTDPLVQEVRIRVGQRIRELRLAKGMNQDEFAAAAGIHRTHPGKLENAQI 57

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
             +  ++ +A  L   + +LL 
Sbjct: 58 DPQLSTLVKVASALGVRVDELLT 80


>gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
 gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent,
           putative [Octadecabacter antarcticus 307]
          Length = 822

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R  D       +      F +  +  R E  LTQKE+ +    +Q ++S +E   S  + 
Sbjct: 552 RPNDVTGSVLCVGVSVETFGDRLKKKRSEMSLTQKELADAANISQPFLSRIEKKSSEASS 611

Query: 64  DNMIILAHTLDT 75
           DN+  LA  L  
Sbjct: 612 DNVRALATALGV 623


>gi|148557504|ref|YP_001265086.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148502694|gb|ABQ70948.1| transcriptional regulator, XRE family [Sphingomonas wittichii
          RW1]
          Length = 252

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P       R         R  R +  L+ +E+  RTG   S +S+LE GK  +  D ++
Sbjct: 25 SPETMAKTPRNTSQPGPALRAARLDKGLSLRELAARTGLPFSTLSKLENGKMGMTYDRLV 84

Query: 68 ILAHTLDTPLWKLL 81
          +LA  L   + KL 
Sbjct: 85 LLAQALGVEIGKLF 98


>gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 199

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R    L+ + +  R+G ++S IS +E  +S+     +  LA  L   L  L
Sbjct: 9  LIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATALGVTLASL 68

Query: 81 LK 82
           +
Sbjct: 69 FE 70


>gi|15964024|ref|NP_384377.1| hypothetical protein SMc00351 [Sinorhizobium meliloti 1021]
 gi|15073200|emb|CAC41708.1| Putative HTH-type transcriptional regulator [Sinorhizobium
          meliloti 1021]
          Length = 197

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P + +AI           R +R    LT  ++  R+G +++ IS +E G+++     + 
Sbjct: 3  SPIMENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLA 62

Query: 68 ILAHTLDTPLWKLL 81
           L   L T L  L 
Sbjct: 63 KLCSALGTTLSALF 76


>gi|65319713|ref|ZP_00392672.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
          Length = 106

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+T +E  +  G + S IS++E G +  ++  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNKMTIREFADYAGISTSLISQIERGHANPSLSVLELIAKALNVPLFTLF 65


>gi|325845858|ref|ZP_08169056.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481764|gb|EGC84796.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 185

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +N R    L+ K++  +   + S +S++E+GK+  +++ + +++  L  P++ L 
Sbjct: 4  LGKNIKNFRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLF 63


>gi|205354377|ref|YP_002228178.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|205274158|emb|CAR39172.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|326629505|gb|EGE35848.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
          Length = 188

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G     ++ +  L   LD P  +L
Sbjct: 13 VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPTLETLWSLCVALDIPFARL 72

Query: 81 LKP 83
          L+P
Sbjct: 73 LEP 75


>gi|167768231|ref|ZP_02440284.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1]
 gi|317497813|ref|ZP_07956125.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167709755|gb|EDS20334.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1]
 gi|291560246|emb|CBL39046.1| Helix-turn-helix [butyrate-producing bacterium SSC/2]
 gi|316894926|gb|EFV17096.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 115

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK   LTQ+ +  + G +Q +I E+E G+  ++I +   L   LD     LL
Sbjct: 8  LGKRIKLTRKGQDLTQEMLAEKAGVSQHYIYEIEAGRKAMSIHSFASLTTALDVSADYLL 67


>gi|330881957|gb|EGH16106.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 187

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|166362821|ref|YP_001655094.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843]
 gi|166085194|dbj|BAF99901.1| hypothetical protein MAE_00800 [Microcystis aeruginosa NIES-843]
          Length = 73

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           I     +  R+E   +Q+ +   TG  +++IS+LE G  + ++  +  + + L 
Sbjct: 8  QILGRELQRYRQEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITNALG 62


>gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797]
 gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797]
          Length = 205

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 2  PRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          P RK+        +  + +        R +RKE   +   +    G ++S +S++E G++
Sbjct: 5  PARKKTSATTGSELSPDEISGQLSQRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEA 64

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
             +   + ++      L +L++
Sbjct: 65 NPTLAVTVRISQAFGIALGELVE 87


>gi|119962787|ref|YP_946870.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119949646|gb|ABM08557.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 175

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +RK   +T  ++ + TG +Q+ +S++E G +  +   +  LAH LD P
Sbjct: 1  MRKAKGMTLAQLSDVTGLSQAIVSQIERGMANPSFTTLAQLAHGLDIP 48


>gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 226

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +RKE  LTQ+E     G ++  +++ E G+S  ++D +I +++     + KL+K
Sbjct: 5  QKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDKLVK 63


>gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 292

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           +  N  + IRKE K+TQKE+ +  G  +Q+ IS++E G+++  ID +  ++  L  PL 
Sbjct: 7  HMIGNEIKRIRKEKKMTQKELCD--GICSQAEISKIENGRNSPTIDLLQQISKRLRVPLS 64

Query: 79 KLLK 82
           L +
Sbjct: 65 LLFR 68


>gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067]
          Length = 104

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|229606284|ref|YP_002876932.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236]
 gi|229607600|ref|YP_002878248.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236]
 gi|229607707|ref|YP_002878355.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236]
 gi|229608129|ref|YP_002878777.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236]
 gi|229368939|gb|ACQ59362.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236]
 gi|229370255|gb|ACQ60678.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236]
 gi|229370362|gb|ACQ60785.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236]
 gi|229370784|gb|ACQ61207.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236]
          Length = 69

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK   LTQ ++       +S++  +E G+  I I+ +  +A TL     +L
Sbjct: 8  LVGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNITIEKLYEIAETLGCDAKEL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|325123768|gb|ADY83291.1| hypothetical protein BDGL_002705 [Acinetobacter calcoaceticus
          PHEA-2]
          Length = 209

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R +R E  L+Q+++ ++ G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 37 VGTNIRLLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 90


>gi|326789972|ref|YP_004307793.1| hypothetical protein Clole_0862 [Clostridium lentocellum DSM
          5427]
 gi|326540736|gb|ADZ82595.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 151

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE KL+Q  + +  G + ++I +LE G    +I+ +  +A  L+  + +L 
Sbjct: 6  LKTKRKEMKLSQSALGSLVGVSGAYIQQLEAGTKNPSIETLKKIADALNIRVNELF 61


>gi|296131950|ref|YP_003639197.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296030528|gb|ADG81296.1| transcriptional regulator, XRE family [Thermincola potens JR]
          Length = 129

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
               +        R  R++ +L++++     G +  ++ +LE G+  +++  +  +A  
Sbjct: 3  KKSEIDNKAIGQRIREEREKLELSREKFAEIIGLSDYYVGQLERGERQMSLRVLFKIARC 62

Query: 73 LDTPLWKLL 81
          L   L  L+
Sbjct: 63 LHVSLDYLI 71


>gi|294501848|ref|YP_003565548.1| Cro/CI family transcriptional regulator [Bacillus megaterium QM
          B1551]
 gi|294351785|gb|ADE72114.1| transcriptional regulator, Cro/CI family [Bacillus megaterium QM
          B1551]
          Length = 140

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ R +   +Q+E+ N+   +++ IS+ E  K T +I + + L +     L +L+
Sbjct: 4  FGERIKHFRLKGGFSQEELANQLNVSRTTISKWECSKQTPSIFDFLSLCNCFQITLDQLI 63

Query: 82 KP 83
          +P
Sbjct: 64 EP 65


>gi|228939575|ref|ZP_04102160.1| hypothetical protein bthur0008_22320 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228975801|ref|ZP_04136334.1| hypothetical protein bthur0003_55330 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228979054|ref|ZP_04139404.1| hypothetical protein bthur0002_22430 [Bacillus thuringiensis
          Bt407]
 gi|228780678|gb|EEM28895.1| hypothetical protein bthur0002_22430 [Bacillus thuringiensis
          Bt407]
 gi|228783910|gb|EEM31956.1| hypothetical protein bthur0003_55330 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228820098|gb|EEM66138.1| hypothetical protein bthur0008_22320 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326940141|gb|AEA16037.1| transcriptional regulator [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 185

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|315645386|ref|ZP_07898510.1| XRE family transcriptional regulator [Paenibacillus vortex V453]
 gi|315278864|gb|EFU42174.1| XRE family transcriptional regulator [Paenibacillus vortex V453]
          Length = 106

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IRK   LTQ+E+  + G + S+I  LE G+    +  +  +   L+   +  +
Sbjct: 13 IREIRKNQNLTQEELAEKIGSSFSYIGRLERGEGNFTVQTLEKITTALNIDFFDFM 68


>gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 116

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R +  ++Q +I  RTG  + ++S +E G +  +++ +  +A  LD PL +  
Sbjct: 4  GGTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQFF 62


>gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein
          [Streptomyces bingchenggensis BCW-1]
          Length = 204

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++  +T  ++   TG ++S +S LE+G+   +++ ++ LA     PL  L+
Sbjct: 16 VGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYGVPLDDLV 75


>gi|323342509|ref|ZP_08082741.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463621|gb|EFY08815.1| DNA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 258

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++Q+ +  +   ++  IS+ E G+S  +IDN+I L+  L  PL  L+K
Sbjct: 1  MSQEMLAEKLNISRQSISKWERGESLPSIDNLIRLSEILGIPLNDLVK 48


>gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL
          J1-208]
          Length = 110

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|229161388|ref|ZP_04289372.1| hypothetical protein bcere0009_21770 [Bacillus cereus R309803]
 gi|228622094|gb|EEK78936.1| hypothetical protein bcere0009_21770 [Bacillus cereus R309803]
          Length = 185

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|161617166|ref|YP_001591131.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|167551474|ref|ZP_02345229.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|167991568|ref|ZP_02572667.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232973|ref|ZP_02658031.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|168237658|ref|ZP_02662716.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|168244212|ref|ZP_02669144.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|168263065|ref|ZP_02685038.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|168467376|ref|ZP_02701213.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|168821618|ref|ZP_02833618.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|194446538|ref|YP_002043263.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194451910|ref|YP_002048044.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194468718|ref|ZP_03074702.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194736659|ref|YP_002116963.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|197251740|ref|YP_002148970.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197263714|ref|ZP_03163788.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|198244893|ref|YP_002217966.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|200388606|ref|ZP_03215218.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204930179|ref|ZP_03221156.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|224585852|ref|YP_002639651.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|238912186|ref|ZP_04656023.1| hypothetical protein SentesTe_13791 [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|161366530|gb|ABX70298.1| hypothetical protein SPAB_05007 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|194405201|gb|ACF65423.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194410214|gb|ACF70433.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194455082|gb|EDX43921.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|194712161|gb|ACF91382.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|195630241|gb|EDX48881.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197215443|gb|ACH52840.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197241969|gb|EDY24589.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|197289380|gb|EDY28745.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|197939409|gb|ACH76742.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|199605704|gb|EDZ04249.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|204320583|gb|EDZ05785.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|205323777|gb|EDZ11616.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205330070|gb|EDZ16834.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332759|gb|EDZ19523.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|205336928|gb|EDZ23692.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|205341774|gb|EDZ28538.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205348305|gb|EDZ34936.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|224470380|gb|ACN48210.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
 gi|312915157|dbj|BAJ39131.1| hypothetical protein STMDT12_C41880 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321225331|gb|EFX50389.1| Putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. TN061786]
 gi|326625758|gb|EGE32103.1| Helix-turn-helix type 3 [Salmonella enterica subsp. enterica
          serovar Dublin str. 3246]
          Length = 182

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|226225799|ref|YP_002759905.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27]
 gi|226088990|dbj|BAH37435.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27]
          Length = 145

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R  A  +Q+   +  G  +++I  +E G++ I+I+N+  +A  L   +  L 
Sbjct: 7  FGKTVRRLRTNAGFSQETFADLVGMHRNYIGTVERGETNISIENIHRIARGLRITIAGLF 66

Query: 82 K 82
          +
Sbjct: 67 Q 67


>gi|134298753|ref|YP_001112249.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051453|gb|ABO49424.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 67

 Score = 56.5 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +R++  L+Q ++       QS I  +E G+    +  +  LA  L   L KL
Sbjct: 1  MLAVNLKQLREQKGLSQNQLAKLANVPQSAIHYIENGERNPGLQTVEKLADGLGVTLSKL 60

Query: 81 LK 82
          ++
Sbjct: 61 VE 62


>gi|330890890|gb|EGH23551.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 199

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+  
Sbjct: 2  PTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSR 61

Query: 69 LAHTLDTPLWKLL 81
          L   L  P+ KL 
Sbjct: 62 LCDVLGMPMSKLF 74


>gi|296133125|ref|YP_003640372.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296031703|gb|ADG82471.1| transcriptional regulator, XRE family [Thermincola potens JR]
          Length = 89

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 5  KRDEPHLSD-AILRERMIFVNNFRN----IRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          K+      +     E++  + N +     +R E  L+QK++ ++ G  QS IS LE+G+ 
Sbjct: 7  KKHLLQDPEVKSEYEKLQVLYNIKREIIRLRLEQGLSQKDLADKVGTKQSAISRLESGEY 66

Query: 60 TINIDNMIILAHTLDTPL 77
            +++ +  +AH L   L
Sbjct: 67 NPSVEFLTKIAHALGKEL 84


>gi|37678326|ref|NP_932935.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37197065|dbj|BAC92906.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 68

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +N R  RK   ++Q ++       +S++  +E G+  I ++    LA  L   +  LL
Sbjct: 8  FGDNLRRERKLKGISQDKLAISADIDRSYVGRIERGEVNITLEKAYQLASILGCDVRDLL 67


>gi|302869035|ref|YP_003837672.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315504494|ref|YP_004083381.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302571894|gb|ADL48096.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315411113|gb|ADU09230.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 186

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D       I     R  R+ A L+  E+  R G A+S +S+LE+G    +++ +  L   
Sbjct: 4  DPAPPLATI-AAALRRERERAGLSLTELARRAGIAKSTLSQLESGSGNPSVETLWALGVA 62

Query: 73 LDTPLWKLLKP 83
          LD P  +L++P
Sbjct: 63 LDVPFSRLVEP 73


>gi|296105405|ref|YP_003615551.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295059864|gb|ADF64602.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 182

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  EI  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|269126718|ref|YP_003300088.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268311676|gb|ACY98050.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 478

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++R+   +T  ++  + G A S +S LE G+    +  +  LA  L+ P+ +LL
Sbjct: 10 FGQRLRHLRRARGMTLADLGAKVGRAPSQLSLLENGRREPKLSLLKSLAAALEVPVEELL 69

Query: 82 K 82
          +
Sbjct: 70 R 70


>gi|325681366|ref|ZP_08160892.1| putative restriction-modification system control element Bcll
          [Ruminococcus albus 8]
 gi|324106856|gb|EGC01146.1| putative restriction-modification system control element Bcll
          [Ruminococcus albus 8]
          Length = 75

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N    RK  KLTQ ++       +S IS +E G   ++ D +  L   L+    +
Sbjct: 10 ELFGANVVYYRKLKKLTQLQLAELADIDRSHISAIELGNVGVSFDLIFKLCEVLEIKPRQ 69

Query: 80 LL 81
          L 
Sbjct: 70 LF 71


>gi|255534813|ref|YP_003095184.1| helix-turn-helix domain protein [Flavobacteriaceae bacterium
          3519-10]
 gi|255341009|gb|ACU07122.1| helix-turn-helix domain protein [Flavobacteriaceae bacterium
          3519-10]
          Length = 491

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +++F    +  RK   L+ +++   TG ++S+++E+E GK     D +I LA  L     
Sbjct: 9  KLVFGLKMKQYRKIKNLSLQDLATLTGLSKSYLNEIENGKKYPKHDKIIPLATALGCTYN 68

Query: 79 KLL 81
           L+
Sbjct: 69 DLV 71


>gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain
          [Burkholderia glumae BGR1]
          Length = 204

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E  L+  E+  R G +   +S++E  K+  ++  +  L   L  PL  LL
Sbjct: 19 VGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALSVPLSALL 78

Query: 82 K 82
          +
Sbjct: 79 E 79


>gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain
          [Roseobacter sp. GAI101]
 gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain
          [Roseobacter sp. GAI101]
          Length = 183

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R IR+E  L+Q+E+  + G     IS +E  K++ ++ ++  L   +   + +   
Sbjct: 4  GHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAEFFS 63

Query: 83 P 83
          P
Sbjct: 64 P 64


>gi|149180249|ref|ZP_01858754.1| transcriptional regulator, XRE family protein [Bacillus sp. SG-1]
 gi|148852441|gb|EDL66586.1| transcriptional regulator, XRE family protein [Bacillus sp. SG-1]
          Length = 106

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    R  RK   L+Q+E+ +R+GF  + ++ +E GK+ ++   +  +A  L+    
Sbjct: 25 KQSFGKVIRAHRKYKGLSQEELAHRSGFHHNHLNNIELGKAGMSHHTVFKVAAGLNVTPS 84

Query: 79 KLLK 82
          +LLK
Sbjct: 85 QLLK 88


>gi|108805301|ref|YP_645238.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108766544|gb|ABG05426.1| transcriptional regulator, XRE family with cupin sensor
          [Rubrobacter xylanophilus DSM 9941]
          Length = 220

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M   K D    +  +  ++ +  N  R  R E  LT  +I  R   ++S +S++E G+++
Sbjct: 8  MKSAKNDNRRANTRLNPDQYL-GNFIRKYRLEKGLTLSDISARASISKSMLSKIENGQAS 66

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           ++  +  LA  L   L  + 
Sbjct: 67 PSLHTIARLAQALGVTLSTMF 87


>gi|253580339|ref|ZP_04857605.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848432|gb|EES76396.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 184

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IRK   ++  ++  +TG ++S ++++E G +  ++  +  +   L     +L+
Sbjct: 8  VAVNLKRIRKSKSMSLDQVSEQTGVSKSMLAQIERGTANPSLGVLGKITSGLRIEFQELI 67

Query: 82 KP 83
          +P
Sbjct: 68 QP 69


>gi|308235770|ref|ZP_07666507.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018]
 gi|311114942|ref|YP_003986163.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC
          14019]
 gi|310946436|gb|ADP39140.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC
          14019]
          Length = 210

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii
          A2-165]
 gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii
          A2-165]
          Length = 208

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK   LTQ+E+      +++ IS+ E+G+   +ID++  ++      + +LL
Sbjct: 6  FHEKLQELRKSRGLTQEELAEALFVSRTAISKWESGRGYPSIDSLKEISRYFSVSIDELL 65


>gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str.
          TW14359]
 gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str.
          TW14359]
          Length = 200

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M +R +++   SD               +RK   LT  E+  R+G +Q+ IS++E G S+
Sbjct: 7  MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 58

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +   +  LA+ L+  L KL 
Sbjct: 59 PSATILSRLANALNITLSKLF 79


>gi|229490457|ref|ZP_04384298.1| transcriptional regulator, Cro/CI family [Rhodococcus
          erythropolis SK121]
 gi|229322747|gb|EEN88527.1| transcriptional regulator, Cro/CI family [Rhodococcus
          erythropolis SK121]
          Length = 190

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D     + +     +  R  A L+  E+  R   A+S +S+LE+G    +++ +  L + 
Sbjct: 7  DTAETPQKLVAVALKRERTRAGLSLSEVARRADIAKSTLSQLESGLGNPSLETLWALGNA 66

Query: 73 LDTPLWKLL 81
          L  P  +L+
Sbjct: 67 LGVPFSQLV 75


>gi|317054120|ref|YP_004118145.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316952115|gb|ADU71589.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 199

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK   +  +E+  + G ++S+IS LE   +  +I  ++ +   +     KL 
Sbjct: 21 VGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASIATLLKVCEVVGITPAKLF 80

Query: 82 KP 83
           P
Sbjct: 81 DP 82


>gi|206560147|ref|YP_002230911.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198036188|emb|CAR52084.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 240

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R +       D  +   +   N  R +R+  KLT  E     G ++ ++S++E G++T +
Sbjct: 45  RLRTSMTVPPDESVLVAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPS 104

Query: 63  IDNMIILAHTLDTPL 77
           I +++ +A  L   +
Sbjct: 105 ITSLVRIAQALGVTM 119


>gi|86133032|ref|ZP_01051619.1| DNA binding helix-turn helix protein [Dokdonia donghaensis
          MED134]
 gi|85816429|gb|EAQ37620.1| DNA binding helix-turn helix protein [Dokdonia donghaensis
          MED134]
          Length = 490

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    R IR +  L+   +   TG ++S+++E+E GK     D +  L+  LD P  
Sbjct: 7  KLIFGLKLRQIRTDKNLSLFGLSKLTGLSKSYLNEIEHGKKYPKPDKIFTLSEKLDIPYD 66

Query: 79 KLL 81
          +++
Sbjct: 67 QMV 69


>gi|328947050|ref|YP_004364387.1| hypothetical protein Tresu_0124 [Treponema succinifaciens DSM
          2489]
 gi|328447374|gb|AEB13090.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 106

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF+ N +  RK+A LTQ+++      + S+I ++E  +   + + +  +A  L+ P+ 
Sbjct: 4  RRIFIQNMKYYRKQAGLTQEKLAEAIDMSTSYIGDMEARERFPSAETIDKIAAALEIPVS 63

Query: 79 KLL 81
           L 
Sbjct: 64 LLF 66


>gi|322613196|gb|EFY10140.1| hypothetical protein SEEM315_17865 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322619177|gb|EFY16060.1| hypothetical protein SEEM971_20829 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322626043|gb|EFY22855.1| hypothetical protein SEEM973_21760 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322626497|gb|EFY23303.1| hypothetical protein SEEM974_14708 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632390|gb|EFY29138.1| hypothetical protein SEEM201_18692 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322635128|gb|EFY31849.1| hypothetical protein SEEM202_17461 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322642669|gb|EFY39259.1| hypothetical protein SEEM954_08582 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322647958|gb|EFY44430.1| hypothetical protein SEEM054_15121 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650708|gb|EFY47109.1| hypothetical protein SEEM675_00280 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322652891|gb|EFY49228.1| hypothetical protein SEEM965_09839 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657206|gb|EFY53486.1| hypothetical protein SEEM19N_14452 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322662306|gb|EFY58521.1| hypothetical protein SEEM801_06228 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322666841|gb|EFY63017.1| hypothetical protein SEEM507_05993 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672111|gb|EFY68226.1| hypothetical protein SEEM877_04625 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322675833|gb|EFY71905.1| hypothetical protein SEEM867_04673 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322681751|gb|EFY77777.1| hypothetical protein SEEM180_13742 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322684054|gb|EFY80063.1| hypothetical protein SEEM600_14844 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323193326|gb|EFZ78541.1| hypothetical protein SEEM581_19668 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323197683|gb|EFZ82816.1| hypothetical protein SEEM501_14961 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323200743|gb|EFZ85814.1| hypothetical protein SEEM460_14930 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323207252|gb|EFZ92204.1| hypothetical protein SEEM020_16655 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323211454|gb|EFZ96295.1| hypothetical protein SEEM6152_00405 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323218500|gb|EGA03208.1| hypothetical protein SEEM0077_08820 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323221017|gb|EGA05449.1| hypothetical protein SEEM0047_14034 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
 gi|323225993|gb|EGA10212.1| hypothetical protein SEEM0055_20581 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323231673|gb|EGA15785.1| hypothetical protein SEEM0052_06395 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323236078|gb|EGA20156.1| hypothetical protein SEEM3312_17409 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323239500|gb|EGA23549.1| hypothetical protein SEEM5258_18857 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243906|gb|EGA27917.1| hypothetical protein SEEM1156_17632 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323249269|gb|EGA33186.1| hypothetical protein SEEM9199_02187 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323250488|gb|EGA34371.1| hypothetical protein SEEM8282_08477 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323258942|gb|EGA42594.1| hypothetical protein SEEM8283_01562 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260187|gb|EGA43810.1| hypothetical protein SEEM8284_01027 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323265306|gb|EGA48803.1| hypothetical protein SEEM8285_17297 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323270528|gb|EGA53974.1| hypothetical protein SEEM8287_12833 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
          Length = 182

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  VIARSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8]
 gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans
          A8]
          Length = 184

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R++  L+ +++  RTG  +S++S+LE G S  +I  ++ LA      + +L+
Sbjct: 7  RLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGLGVSELV 63


>gi|255655682|ref|ZP_05401091.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296451687|ref|ZP_06893419.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296878931|ref|ZP_06902930.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259450|gb|EFH06313.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296430044|gb|EFH15892.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 183

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N   +R E  L+  ++   +G ++  +S++E G S   ++ +  +A  L+ P   +
Sbjct: 6  IIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAI 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 272

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +     R+IR++  LTQ E+  R G +   I ++E GK   ++  +  +A  +       
Sbjct: 133 VIATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQPSLRTIERVAEAVGVTPCYF 192

Query: 81  LKP 83
           L P
Sbjct: 193 LVP 195



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R+E  L  +E+    G +   +  +E  +   ++D +  LA  L+  + +L+
Sbjct: 69  LGQKLRLLREERGLALQELARLAGISIETLRAIEAEEVRPSVDTLRTLADHLNVSIPQLM 128



 Score = 43.4 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R +R+E  L+ +E+   +G + S++SE+E G        +  ++  L 
Sbjct: 6  IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPRIIDKISTALG 54


>gi|159897542|ref|YP_001543789.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159890581|gb|ABX03661.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 491

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +IF    R  R EA L+  E   R   + S+++E+E G+     D ++ +A  L     +
Sbjct: 8  LIFGMKLRQARLEANLSLTEFAARAELSPSYVTEMEKGRKYPKPDKIVKMAQVLGKGYDE 67

Query: 80 LL 81
          L+
Sbjct: 68 LV 69


>gi|319647195|ref|ZP_08001417.1| ImmF control region protein [Bacillus sp. BT1B_CT2]
 gi|317390542|gb|EFV71347.1| ImmF control region protein [Bacillus sp. BT1B_CT2]
          Length = 79

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R +     +N R + KLTQ E+  +TG ++S+IS++E G+       +  LA  +D  L
Sbjct: 3  DRKLLGALIKNQRCKKKLTQLELAEQTGLSRSYISDIENGRYIPGASTLTSLAICIDLDL 62


>gi|283782998|ref|YP_003373752.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|283441145|gb|ADB13611.1| DNA-binding protein [Gardnerella vaginalis 409-05]
          Length = 210

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|315499433|ref|YP_004088236.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gi|315417445|gb|ADU14085.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 99

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +   N   +R E  L+Q E+  R     Q +IS+LE GK    +    +LA  L   +  
Sbjct: 6  LVGLNVARLRTERGLSQLELALRCEILTQGYISKLEAGKRNPTVVIQYLLAEALGVEVGA 65

Query: 80 LL 81
          L 
Sbjct: 66 LF 67


>gi|226306979|ref|YP_002766939.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226186096|dbj|BAH34200.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 190

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D     + +     +  R  A L+  E+  R   A+S +S+LE+G    +++ +  L + 
Sbjct: 7  DTAETPQKLVAVALKRERARAGLSLSEVARRADIAKSTLSQLESGLGNPSLETLWALGNA 66

Query: 73 LDTPLWKLL 81
          L  P  +L+
Sbjct: 67 LGVPFSQLV 75


>gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1]
 gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor
          [Sphingomonas wittichii RW1]
          Length = 201

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 35/64 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R+ RK  KLT  E+  R+  + S+IS  E GK+T +I +++ LA  LD  +  
Sbjct: 15 MSFGELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDISY 74

Query: 80 LLKP 83
           L P
Sbjct: 75 FLAP 78


>gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional
          regulator [Bacillus cereus E33L]
          Length = 146

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+   ++Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSLGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|229087336|ref|ZP_04219477.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44]
 gi|228695973|gb|EEL48817.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44]
          Length = 185

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N  + +R E ++T K++  +T  + S+IS++E  KS+I ++++  L+  L    
Sbjct: 6  GNKIKALRLEKRMTLKQVSEKTNLSISFISQVERSKSSITLESLKKLSEALHVSP 60


>gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM
          15897]
          Length = 217

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +  R   KLTQ+++    G ++  IS  E  KS  +I ++I ++   D  L  LLK
Sbjct: 6  GSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLLK 65


>gi|330876735|gb|EGH10884.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
          Length = 189

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 32/74 (43%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +           +N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVAFSDLIQ 75


>gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes
          WB4]
 gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes
          WB4]
          Length = 266

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +         +RK   L+Q+E+    GF++  ++++E G   I I  M  LA  L   L 
Sbjct: 7  QKQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGNRNIGILEMQKLATVLGFSLD 66

Query: 79 KLL 81
           ++
Sbjct: 67 DIM 69


>gi|303242620|ref|ZP_07329095.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302589828|gb|EFL59601.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 64

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  L+Q+++  + G  +  I  +E+G     ++  I +   L+  L  L 
Sbjct: 4  KKMKIARIECDLSQEQLAEKVGVTRQTIGMIESGNYNPTLNLCIEICKALNKTLNDLF 61


>gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp.
          MP5ACTX8]
 gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp.
          MP5ACTX8]
          Length = 137

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
            +                   R+ R +  ++Q +I  RTG  + ++S +E G +  +++
Sbjct: 9  PSEMAVSPGPAPIN---IGMTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLE 65

Query: 65 NMIILAHTLDTPLWKLL 81
           +  +A  LD PL +  
Sbjct: 66 TLQKIAAALDLPLSQFF 82


>gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM
          13279]
 gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM
          13279]
          Length = 320

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 35/67 (52%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R+ M F +N   +R    +TQ+++    G  +  +S+ E+G ST ++D ++ L    + 
Sbjct: 5  ERDTMSFRDNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLVRLCEIFEV 64

Query: 76 PLWKLLK 82
           L  L++
Sbjct: 65 DLDDLIR 71


>gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC
          3537]
          Length = 134

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 40/63 (63%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF  N  ++RKEA ++Q+E+ ++    +  IS+ E G+ T ++  + ++A   +TP+ 
Sbjct: 2  KIIFSKNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVE 61

Query: 79 KLL 81
          +LL
Sbjct: 62 ELL 64


>gi|308067389|ref|YP_003868994.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681]
 gi|305856668|gb|ADM68456.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus
          polymyxa E681]
          Length = 183

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N + +R E KL+  ++ + TG +++ + ++E G+S  +I  +  +A+ L      
Sbjct: 6  LILSKNLKYLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISFTA 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|295106954|emb|CBL04497.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 73

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +R +     +++R+E  L+Q       G ++++++++E G+  +++  +  +A  L 
Sbjct: 5  SETQRRL-GLRIKDLREERGLSQYACAPLLGVSRTYLADVECGRRNVSLATLDSIARGLG 63

Query: 75 TPLWKLLK 82
            L +LLK
Sbjct: 64 ISLEELLK 71


>gi|255602345|ref|XP_002537833.1| conserved hypothetical protein [Ricinus communis]
 gi|223514890|gb|EEF24550.1| conserved hypothetical protein [Ricinus communis]
          Length = 83

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L  ++ F    R +RK A  +Q+ +       +++IS +E G+    I  +  LA  L 
Sbjct: 5  SLAPKLAFGRVLRRLRKAAGFSQERLALEADVRRTYISLIELGQHQPTITTLFKLAAALK 64

Query: 75 TPLWKLLK 82
               L++
Sbjct: 65 QKPSDLIR 72


>gi|301062224|ref|ZP_07202901.1| helix-turn-helix protein [delta proteobacterium NaphS2]
 gi|300443656|gb|EFK07744.1| helix-turn-helix protein [delta proteobacterium NaphS2]
          Length = 180

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  RK+  LT K I  + G ++ ++S++E    + ++D ++ + + +      LL
Sbjct: 7  IRRHRKDRNLTLKAIAEKAGISEGFMSQVENNVKSPSVDTLVKICNAIGVNAGDLL 62


>gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 272

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N RKEA LTQ+++  +    +  +S  ETG+S  +ID   +LA  L  P   L 
Sbjct: 7  IQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVPAVGLF 62


>gi|261377839|ref|ZP_05982412.1| DNA-binding protein [Neisseria cinerea ATCC 14685]
 gi|269146143|gb|EEZ72561.1| DNA-binding protein [Neisseria cinerea ATCC 14685]
          Length = 105

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N R  R     +Q+E+  + G  ++++S +E  +  I + N+  +A  LD   +
Sbjct: 18 RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMATALDVAAY 77


>gi|313207090|ref|YP_004046267.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM
          15868]
 gi|312446406|gb|ADQ82761.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM
          15868]
 gi|315022512|gb|EFT35539.1| putative prophage LambdaCh01, repressor protein [Riemerella
          anatipestifer RA-YM]
 gi|325335473|gb|ADZ11747.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD]
          Length = 198

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + IR+   L+Q+   +     +  IS  E G++   ++ ++ +A  LD     L+
Sbjct: 4  FGTNIKKIRQIKGLSQQAFADMLNLTRGIISSYEDGRAEPKVETLLRIAQFLDMKADDLI 63


>gi|167464931|ref|ZP_02330020.1| Transcriptional regulator, xre family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 57

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          F  N   +RK+  ++Q+E+  +    +  IS +E G      +N+  +A   
Sbjct: 5  FGQNVARLRKKKGMSQEELAEKLDVKKQTISNIERGVRYPTFENLEKIAQLF 56


>gi|284045383|ref|YP_003395723.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949604|gb|ADB52348.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 253

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 36/80 (45%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P RK ++  L+D             R  R+   +  +E+  R G + S IS +E GK+  
Sbjct: 3  PPRKTEDGPLADVTQVALKDVGARLRRDREARGVGVRELARRIGVSPSLISAIELGKANP 62

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +I  +  +   L+  + +L+
Sbjct: 63 SIGTLYQIVDELNLSVDELM 82


>gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 108

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +++R+E KLTQ++I +  G  +S IS  E+GK +++ +N+I  A   D  +  +
Sbjct: 3  MFGQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYI 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|118479525|ref|YP_896676.1| MerR family transcriptional regulator [Bacillus thuringiensis str.
           Al Hakam]
 gi|118418750|gb|ABK87169.1| transcriptional regulator, MerR family [Bacillus thuringiensis str.
           Al Hakam]
          Length = 237

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 60  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 118


>gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 222

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R++ KLT +++  + G + S++S++E G+S  ++  +  LA  L T +  
Sbjct: 1  MSVGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62



 Score = 43.1 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  + +RK+ K +  E   + G ++ +  +LE G    +I     LA   +     L+
Sbjct: 80  ANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDIKLTKKLADIFNVSADYLI 138


>gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
 gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
          Length = 179

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 33/55 (60%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  R++R +  LTQ+E+  R+   + +IS+LE   ++ ++D++  + + L T +
Sbjct: 4  GDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDM 58


>gi|225410097|ref|ZP_03761286.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme
          DSM 15981]
 gi|225042384|gb|EEG52630.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme
          DSM 15981]
          Length = 228

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N R +R +  +TQ+++  + G  +  +S  E+G++  +I+ ++ L     T L  +L
Sbjct: 5  QNLRQLRLDCGMTQEQVAAKIGLTRQALSSYESGRTRPDIEMLMRLCEVYGTDLDAIL 62


>gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC
          29328]
 gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia
          magna ATCC 29328]
          Length = 179

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 33/55 (60%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  R++R +  LTQ+E+  R+   + +IS+LE   ++ ++D++  + + L T +
Sbjct: 4  GDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDM 58


>gi|210632345|ref|ZP_03297312.1| hypothetical protein COLSTE_01206 [Collinsella stercoris DSM
          13279]
 gi|210159661|gb|EEA90632.1| hypothetical protein COLSTE_01206 [Collinsella stercoris DSM
          13279]
          Length = 69

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N   IRKE  L++ E   + G ++  +  +E G+  + +  +  LA  +    W
Sbjct: 6  QHTLGRNICAIRKELGLSKVEFCLQLGISRVTLDLIEQGRDNVKLSTLDQLARAVGKEPW 65

Query: 79 KLLK 82
          +LL+
Sbjct: 66 ELLR 69


>gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 179

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R E +LTQ+E+ NR   ++ +IS++E   ++ +I  +I +   L T L  
Sbjct: 1  MQIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLPD 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|281491791|ref|YP_003353771.1| transcriptional repressor [Lactococcus lactis subsp. lactis
          KF147]
 gi|281375505|gb|ADA65015.1| Transcriptional repressor [Lactococcus lactis subsp. lactis
          KF147]
          Length = 252

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + +RK AKLTQ ++  + G  Q+     E   +   ++ +  LA   D P+ +L+
Sbjct: 3  FGQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLELLEKLADIYDLPIQELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 189

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+E  ++  E+  R G  ++ +S LE G     ++ +  +   L  PL
Sbjct: 25 VGQRIRRLREERGISLSELARRAGVGKATLSGLENGTRNPTLETLWAVTAQLGVPL 80


>gi|311739938|ref|ZP_07713772.1| possible DNA-binding protein [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311305011|gb|EFQ81080.1| possible DNA-binding protein [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 124

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET------GKSTINIDNMIILAHTLDT 75
          F    R +RK   ++Q+ +   +G ++S IS LE         +   +  +  LA  L+ 
Sbjct: 15 FSQQLRRVRKRRGISQQALAEISGVSRSQISNLERNENGVHAMADPQLSTVYKLALALEI 74

Query: 76 PLWKLL 81
          P   LL
Sbjct: 75 PPAVLL 80


>gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 183

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK   L+  E+  ++G +++ +S +E G ++     +  LA      +  L 
Sbjct: 6  LAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVADLF 65


>gi|146313711|ref|YP_001178785.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145320587|gb|ABP62734.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 182

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  EI  R G A+S +S+LE+G    +++ +  L   L  P  +L
Sbjct: 7  VIAKSLVRERTRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALGIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|94311337|ref|YP_584547.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|254241486|ref|ZP_04934808.1| hypothetical protein PA2G_02182 [Pseudomonas aeruginosa 2192]
 gi|24461525|gb|AAN62096.1|AF440523_3 conserved hypothetical protein [Pseudomonas aeruginosa]
 gi|93355189|gb|ABF09278.1| Putative HTH-type transcriptional regulator yazB (modular
          protein) [Cupriavidus metallidurans CH34]
 gi|126194864|gb|EAZ58927.1| hypothetical protein PA2G_02182 [Pseudomonas aeruginosa 2192]
          Length = 97

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R         A       F    R  R    + Q E  +R G ++S + ++E G+   
Sbjct: 8  PGRPSGTTTYESAAATA---FGQAVRAARVAQGVAQDEFASRAGISRSHMGKIERGEHVP 64

Query: 62 NIDNMIILAHTLDTPLWKLL 81
           +  ++ ++  L     +L+
Sbjct: 65 TLPLILKISVALGISAAELM 84


>gi|293610665|ref|ZP_06692965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827009|gb|EFF85374.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 183

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N R++R E  L+Q+++ +  G ++  I+ LETG+  I++  +  +A  L  
Sbjct: 11 VGTNIRSLRDERDLSQQDLADLAGVSRRTIAALETGQVNISLAKLDSIAAVLGV 64


>gi|229590899|ref|YP_002873018.1| putative helix-turn-helix transcriptional regulatory protein
          [Pseudomonas fluorescens SBW25]
 gi|229362765|emb|CAY49675.1| putative helix-turn-helix transcriptional regulatory protein
          [Pseudomonas fluorescens SBW25]
          Length = 262

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R +R+ AKL+Q ++   TG +Q  +S +ETG++  +   +  L   L+TPL +
Sbjct: 8  GEQLRQLRRRAKLSQLDLALITGVSQRHLSCIETGRAKPSPGTLHNLLTALETPLEQ 64


>gi|205375274|ref|ZP_03228064.1| post-exponential-phase response transcriptional regulator
          [Bacillus coahuilensis m4-4]
          Length = 107

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R E  ++  E+  R G A+S++S +E   +   ++  +  +A  L   +  
Sbjct: 1  MIGERVKQLRLEKNMSMTELAERAGVAKSYLSAIERNLQKNPSVQFLEKVAQALGVSMDS 60

Query: 80 LL 81
          +L
Sbjct: 61 IL 62


>gi|160940818|ref|ZP_02088160.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC
          BAA-613]
 gi|158436338|gb|EDP14105.1| hypothetical protein CLOBOL_05712 [Clostridium bolteae ATCC
          BAA-613]
          Length = 70

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R+E K+T +E+  ++G ++S IS +E G+    +  M +L+  L  P  KL  
Sbjct: 9  IKEFREEKKITLRELSEKSGISKSEISFIENGQRDPTLHTMCLLSLALGVPPAKLFT 65


>gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC
          15912]
 gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC
          15912]
          Length = 295

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    ++IRK+  ++Q+ +  + G ++  +++ ETG    +I+NMI +++  +  + +
Sbjct: 1  MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|225389143|ref|ZP_03758867.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme
          DSM 15981]
 gi|225044801|gb|EEG55047.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme
          DSM 15981]
          Length = 73

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+E+  + G  +  I  +E GK    ++  + +   L   L  L 
Sbjct: 14 KLKSARAALDLSQEELAEKVGVTRQTIGMIEAGKYNPTLNLCVAICKVLGKTLDDLF 70


>gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii
          PG-8A]
 gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii
          PG-8A]
          Length = 182

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    LTQ+E+ NR    + +IS+LE   ++ +I  +  L   L     +  
Sbjct: 5  GKKIRALRLGNNLTQEELANRLELTKGYISQLENNLTSPSIQTLFSLLEVLGVETHEFF 63


>gi|163737915|ref|ZP_02145331.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter
          gallaeciensis BS107]
 gi|161388531|gb|EDQ12884.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter
          gallaeciensis BS107]
          Length = 188

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71


>gi|163743903|ref|ZP_02151274.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161382844|gb|EDQ07242.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10]
          Length = 188

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71


>gi|28870630|ref|NP_793249.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971343|ref|ZP_03399458.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301381233|ref|ZP_07229651.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061820|ref|ZP_07253361.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302131845|ref|ZP_07257835.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28853878|gb|AAO56944.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923881|gb|EEB57461.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|331019463|gb|EGH99519.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
          Length = 189

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 32/74 (43%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +           +N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVAFSDLIQ 75


>gi|295095052|emb|CBK84142.1| Predicted transcriptional regulators [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 182

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  EI  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERLRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|229030146|ref|ZP_04186208.1| hypothetical protein bcere0028_22270 [Bacillus cereus AH1271]
 gi|228731204|gb|EEL82124.1| hypothetical protein bcere0028_22270 [Bacillus cereus AH1271]
          Length = 204

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ K++ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|229176275|ref|ZP_04303750.1| hypothetical protein bcere0006_53300 [Bacillus cereus MM3]
 gi|228607182|gb|EEK64529.1| hypothetical protein bcere0006_53300 [Bacillus cereus MM3]
          Length = 204

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ K++ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKTIREKEKMSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|90414870|ref|ZP_01222836.1| putative transcriptional regulator [Photobacterium profundum
          3TCK]
 gi|90324048|gb|EAS40639.1| putative transcriptional regulator [Photobacterium profundum
          3TCK]
          Length = 208

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR    LT +E   RTG A+S +S++E  + +     M  LA+ L   + +L 
Sbjct: 29 LGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQLF 88

Query: 82 KP 83
           P
Sbjct: 89 AP 90


>gi|54302999|ref|YP_132992.1| HTH_3family transcriptional regulator [Photobacterium profundum
          SS9]
 gi|46916427|emb|CAG23192.1| putative transcriptional regulator, HTH_3family [Photobacterium
          profundum SS9]
          Length = 208

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR    LT +E   RTG A+S +S++E  + +     M  LA+ L   + +L 
Sbjct: 29 LGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQLF 88

Query: 82 KP 83
           P
Sbjct: 89 AP 90


>gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
 gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
          Length = 142

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N   +RK    +Q+E+ +  G ++  +S+ ETG+S  +I+     A+     +  
Sbjct: 1  MSFAENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKRFANVFGVTIDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|262200800|ref|YP_003272008.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
 gi|262084147|gb|ACY20115.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 192

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R +R     T   +  R   + S +S +ETG   + +D ++ +A  L T L +L++P
Sbjct: 11 QRIRGLRIAKGWTLDALAARCFLSPSTLSRIETGHRRVALDQLVPIAQALGTTLDQLVEP 70


>gi|213028985|ref|ZP_03343432.1| hypothetical protein Salmonelentericaenterica_45075 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 89

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 29 VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 88

Query: 81 L 81
          L
Sbjct: 89 L 89


>gi|159905237|ref|YP_001548899.1| XRE family transcriptional regulator [Methanococcus maripaludis
          C6]
 gi|159886730|gb|ABX01667.1| transcriptional regulator, XRE family [Methanococcus maripaludis
          C6]
          Length = 182

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + +RK   L+   + N TG ++S + ++E G+    I  ++ +++ L      
Sbjct: 6  EVISKNLKTLRKRKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTS 65

Query: 80 LLK 82
          LLK
Sbjct: 66 LLK 68


>gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 195

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E  LT  E+  RTG + S +S LE+G     ++ ++ LA     PL  L+
Sbjct: 14 VGPRLRALRHERGLTLSELAERTGISTSTLSRLESGGRKPTLELLLPLARVHGVPLDDLV 73


>gi|239817492|ref|YP_002946402.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804069|gb|ACS21136.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 120

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R++A LTQ E+       +S IS++E G    ++  +  L + L   L  L 
Sbjct: 26 LGRNLRYFREQAGLTQVELAFDAEVERSRISKIERGHVNPSLLTLATLCYCLKITLPTLF 85

Query: 82 K 82
          +
Sbjct: 86 E 86


>gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus
          ATCC 19977]
 gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium
          abscessus]
          Length = 173

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R+E  LT +E+ +RTG  +S++S++E   ST ++   + +A  LD  + +L  
Sbjct: 5  VRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFT 61


>gi|116696126|ref|YP_841702.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530625|emb|CAJ96972.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 204

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +   EP     +           R +R   +LT  ++  + G ++  +S++ETG +   +
Sbjct: 2  KTHAEPPFEAQVPHIEESVGMVIRELRLRERLTIAQVAEQAGLSRGMLSKIETGSTMAGM 61

Query: 64 DNMIILAHTLDTPLWKLL 81
          D +  +A  L  P+  L 
Sbjct: 62 DTLARIARALGVPMAVLF 79


>gi|38233250|ref|NP_939017.1| putative DNA-binding protein [Corynebacterium diphtheriae NCTC
          13129]
 gi|38199509|emb|CAE49160.1| Putative DNA-binding protein [Corynebacterium diphtheriae]
          Length = 193

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK------STINIDNMIILAHTLDT 75
          F      +R+   LTQ  +      +++ IS LE  +      S   +  +  LA  L  
Sbjct: 25 FGVRLHKLRRLRGLTQDGLAEIANLSRNQISNLERNENSATKSSDPTMSTIYRLARALHV 84

Query: 76 PLWKLL 81
          P   L+
Sbjct: 85 PPAALM 90


>gi|145220707|ref|YP_001131385.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|315442341|ref|YP_004075220.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|145213193|gb|ABP42597.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
 gi|315260644|gb|ADT97385.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
          Length = 182

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP   +DE   +      + I  +  R+ R+ A+++ +++  + G +  ++S++E G   
Sbjct: 1  MPPPPQDENLAAVVSNAAQDI-GSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRK 59

Query: 61 INIDNMIILAHTLDTPLWKL 80
           + D +  +A  L      L
Sbjct: 60 PSADVLNQIAKALRVSAEVL 79


>gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 125

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-------INIDNMIILAHTLD 74
          F +    +RK   L+Q+E+  R G  ++ +S LE   S          +  +  LA  L+
Sbjct: 18 FGHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARALE 77

Query: 75 TPLWKLL 81
           P   L+
Sbjct: 78 VPPTYLM 84


>gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 106

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             + +     R +RK   L+Q+ +  + G     IS +E GKS  ++D +  +A  L  
Sbjct: 2  QTAKELLGMRIREVRKARHLSQERLAEKVGVEPKQISRIEGGKSAPSLDTLEAIAKHLQV 61

Query: 76 PLWKLL 81
           +  LL
Sbjct: 62 QMKDLL 67


>gi|226325411|ref|ZP_03800929.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758]
 gi|225206154|gb|EEG88508.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758]
          Length = 135

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +N R EA LTQ++   +   ++  IS  E  KS  +I ++I L+      L +LLK
Sbjct: 4  GKKLKNARIEAGLTQEKAAEKIDVSRQTISNWENEKSYPDIISVIALSDLYSVSLDELLK 63


>gi|157147315|ref|YP_001454634.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895]
 gi|157084520|gb|ABV14198.1| hypothetical protein CKO_03107 [Citrobacter koseri ATCC BAA-895]
          Length = 182

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|99081186|ref|YP_613340.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037466|gb|ABF64078.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
          Length = 209

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
               D    E +      R +RK+   T +   ++ G A+S +S++E G+ +   D + 
Sbjct: 13 AHANGDQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALK 72

Query: 68 ILAHTLDTPLWKLLKP 83
           LA  L   + +L  P
Sbjct: 73 KLAVGLQISVPQLFTP 88


>gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC
          11862]
          Length = 180

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +N +  R++  ++Q+++ +  G ++  IS+ E G +  +  N++ L+      L +L+K
Sbjct: 4  GHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSALPSFKNVLALSDLFVVSLDELVK 63


>gi|312864376|ref|ZP_07724609.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311100097|gb|EFQ58308.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 135

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ R  + LTQ+E+ +  G ++  +S  E GK+  +I ++I L++     L +
Sbjct: 2  MAVGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLSLDQ 61

Query: 80 LLK 82
          L+K
Sbjct: 62 LVK 64


>gi|262373626|ref|ZP_06066904.1| RtrR protein [Acinetobacter junii SH205]
 gi|262311379|gb|EEY92465.1| RtrR protein [Acinetobacter junii SH205]
          Length = 68

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R E K TQ+ +  +    +S++  +E G++ + I+ +  +AH L+     LL
Sbjct: 9  GQLIRKKRIEKKTTQESLALQCCIDRSYMGRIERGEANLTIEKLYDIAHALEVDAKDLL 67


>gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972]
 gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972]
          Length = 184

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E          +RKE KL+Q+E+  +     S IS +E  K + ++ ++  +    +  L
Sbjct: 2  ETDSIGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKVSPSVSSLHKIVKVFNLSL 61

Query: 78 WKLLK 82
           +   
Sbjct: 62 SEFFT 66


>gi|282892178|ref|ZP_06300649.1| hypothetical protein pah_c212o001 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281497912|gb|EFB40260.1| hypothetical protein pah_c212o001 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 54

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 26/47 (55%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+++  +     +++  +E G+  I I+N+  LA+ LD     L+
Sbjct: 1  MSQEKLAEKADLHTNYVGSVERGERNIAIENIYALANALDCSPKDLM 47


>gi|150377496|ref|YP_001314091.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150032043|gb|ABR64158.1| putative transcriptional regulator, XRE family [Sinorhizobium
          medicae WSM419]
          Length = 70

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R IR   +LTQ+E+  ++G +  +I  +E    +  +  +  +A  L     +
Sbjct: 5  EVMAINLRRIRHVKQLTQEELAVQSGLSARYIGSIERADVSATVTVLGQIAAALGVEPAE 64

Query: 80 LLK 82
          L+ 
Sbjct: 65 LVT 67


>gi|325274702|ref|ZP_08140747.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324100169|gb|EGB97970.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 187

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R++R  A ++Q  +  R+G ++  +  +E G+  +++  + ++A  L      L++
Sbjct: 18 NVRSLRNAAGMSQAVLAERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTLIQ 75


>gi|88801079|ref|ZP_01116626.1| transcriptional regulator, putative [Reinekea sp. MED297]
 gi|88776158|gb|EAR07386.1| transcriptional regulator, putative [Reinekea sp. MED297]
          Length = 496

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I     +  R+ A L+ K++  RT  + S++SE+E GK     + +++LAH L+    
Sbjct: 9  RFILGIKIKQFRQNAGLSLKQLSERTQLSVSYLSEIEKGKKYPKPEKIVLLAHALNRTFD 68

Query: 79 KLL 81
          +L+
Sbjct: 69 ELV 71


>gi|332297016|ref|YP_004438938.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332180119|gb|AEE15807.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 100

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  RK+   +Q E   R   +   I  +E G +  + D ++++A  L+ P  +L 
Sbjct: 8  FIRNLKFFRKQKGFSQSEFAERCDVSNGTIGNIECGAAKPSFDLILVMAAVLEIPPARLF 67


>gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
 gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
          Length = 257

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     RNIR++  ++ +E+  R   + S++SE+E G    +++ +  +A+ L+     
Sbjct: 1  MIDGKLIRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQPSLETIEKMANALNISKNA 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62



 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                + IR+E  LTQ E+  + G +   I ++E+G+   ++  +  +AH L    
Sbjct: 140 VGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGRVEPSLKTLEKIAHALSLSP 195



 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%)

Query: 17  RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R           +R+E  ++  E+  + G + +++ ++E G +  ++  +  LA  L   
Sbjct: 70  RNSRSIGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNALPSLSTLKALAEALCMT 129

Query: 77  LWKLL 81
              L+
Sbjct: 130 AQDLM 134


>gi|296166113|ref|ZP_06848558.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898522|gb|EFG78083.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 191

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +       +      R +R +  +T +E+    G   S +S LE+GK  + +D++  LA 
Sbjct: 3  AKTAPDIDLQVRRRLRELRMQRGMTLQEVGAIAGIDISTLSRLESGKRRLALDHLPRLAR 62

Query: 72 TLDTPLWKLLKP 83
           L     +LL+P
Sbjct: 63 ALSVSTDELLQP 74


>gi|284042165|ref|YP_003392505.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946386|gb|ADB49130.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 90

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            I    + F    R +R    L+Q+++    G  +++++ +E G+    +  M+ L   
Sbjct: 9  QPIGPTYITFGRTIRELRVRRGLSQEQLGLHGGLHRNYVASIERGEINPTLRTMLRLQRG 68

Query: 73 LDTPLWKLL 81
          LD PL +++
Sbjct: 69 LDFPLSEIV 77


>gi|254466433|ref|ZP_05079844.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
 gi|206687341|gb|EDZ47823.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
          Length = 186

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R IR  A L+  +    TG +++ + ++E G+S+  I  +  +A     PL  LL
Sbjct: 9  NLREIRSAAGLSLSKAAEITGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALL 65


>gi|291530671|emb|CBK96256.1| Helix-turn-helix [Eubacterium siraeum 70/3]
          Length = 120

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R +  +TQ E+  R   + +++S +ET   + ++D ++++A+ L+     L
Sbjct: 7  LLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKSCSLDTLVMVANELNVSTDDL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|260556784|ref|ZP_05829002.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
 gi|260410043|gb|EEX03343.1| LexA repressor [Acinetobacter baumannii ATCC 19606]
          Length = 224

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             N + IRK  K+TQKE+  ++G  QS IS+LETG +  +  +++ LA  L     +L
Sbjct: 8  LGENLKAIRKAKKMTQKELAMKSGVKQSVISDLETGNAK-STGSILELATALGVTAEEL 65


>gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1]
 gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13]
 gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40]
 gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1]
          Length = 228

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             + R +RKE  L+Q+ + +  G+ +QS I   E G    ++ ++  ++ TL      L
Sbjct: 4  LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVSFVDL 63

Query: 81 L 81
          +
Sbjct: 64 V 64


>gi|145294858|ref|YP_001137679.1| hypothetical protein cgR_0805 [Corynebacterium glutamicum R]
 gi|140844778|dbj|BAF53777.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 124

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75
          F +  + +R     +Q+E+ + +G +++ IS  E  ++         + N+  LA  LD 
Sbjct: 13 FASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDV 72

Query: 76 PLWKLL 81
          P   L+
Sbjct: 73 PPIVLM 78


>gi|15807558|ref|NP_296294.1| transcriptional regulator [Deinococcus radiodurans R1]
 gi|6460399|gb|AAF12112.1|AE002086_4 transcriptional regulator, HTH_3 family [Deinococcus radiodurans
          R1]
          Length = 131

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E  L  K++      +  ++S+LE G++  +++ +  LA   +  +  LL+
Sbjct: 7  ERLRELRSERGLRLKDVAEVADISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLE 65


>gi|315645343|ref|ZP_07898468.1| hypothetical protein PVOR_07550 [Paenibacillus vortex V453]
 gi|315279385|gb|EFU42691.1| hypothetical protein PVOR_07550 [Paenibacillus vortex V453]
          Length = 82

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E + F    R  RKE +LTQ ++   +   +S+ISELE G+    +  +  LA  L    
Sbjct: 10 ELLAFGRALRKTRKEKELTQDQLSLYSRVDRSYISELENGEKAPTLLTITALARALHVKA 69

Query: 78 WKLLK 82
            L++
Sbjct: 70 SLLIE 74


>gi|148252332|ref|YP_001236917.1| anaerobic benzoate catabolism transcriptional regulator
          [Bradyrhizobium sp. BTAi1]
 gi|146404505|gb|ABQ33011.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Bradyrhizobium sp. BTAi1]
          Length = 306

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 4  RKRDEPHLSDAILRERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          R  D P        E           R +R  A +++K +   +G ++ +I++LE+GK  
Sbjct: 3  RDSDAPRDDGQSAAETDFLDQLGQRVRRMRGLAGMSRKVLAQVSGISERYIAQLESGKGN 62

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          ++I  +  +A+ ++ PL  ++
Sbjct: 63 VSIVLLRRIANAINAPLDDII 83


>gi|300694645|ref|YP_003750618.1| transcriptional regulator, xre family [Ralstonia solanacearum
          PSI07]
 gi|299076682|emb|CBJ36021.1| putative transcriptional regulator, XRE family [Ralstonia
          solanacearum PSI07]
          Length = 216

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          + D P    +            R  RK   LT   +  R+G A S IS+ E G   +  +
Sbjct: 9  RNDGPAQDPSAQLNHKEVGARIREARKALGLTLSALSERSGVALSTISKAERGDIALTYE 68

Query: 65 NMIILAHTLDTPLWKLL 81
              LAH L     +LL
Sbjct: 69 KFAGLAHALGLEFEQLL 85


>gi|222085057|ref|YP_002543586.1| hypothetical protein Arad_1139 [Agrobacterium radiobacter K84]
 gi|221722505|gb|ACM25661.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 207

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           R E     + L        N R +R     +   +   +G +++ + ++ETGKS+  I 
Sbjct: 13 PRAESVDEISSLT-----GQNLRRLRTRRGYSLDRLAKISGVSRAMLGQVETGKSSPTIS 67

Query: 65 NMIILAHTLDTPLWKLL 81
           +  +A  LD P   L+
Sbjct: 68 ILWKIAAALDVPCGSLI 84


>gi|206975246|ref|ZP_03236160.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97]
 gi|206746667|gb|EDZ58060.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97]
          Length = 78

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  R  +K++Q+E+   +   +++IS LE GK    I+ +  L+  L     +
Sbjct: 5  QTFGTVLQEYRLNSKMSQEELAFNSELDRTYISLLERGKRKPTINTVFALSKALKINPSQ 64

Query: 80 LLK 82
          L+K
Sbjct: 65 LIK 67


>gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
 gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum
          nigrificans DSM 574]
          Length = 255

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R+E   T +++  R   + S++SE+E G    ++  +  LA  L+    +L++
Sbjct: 5  GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKTQLVE 64



 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +      R IR E  ++ +E+ ++ G + S++SE+E G     ++ +  +A  L  P   
Sbjct: 72  LSLGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVPATA 131

Query: 80  LL 81
           L+
Sbjct: 132 LM 133



 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                +++R+E  LTQ ++ N  G     I ++E GK   ++  +  L+  +    
Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSP 194


>gi|322804952|emb|CBZ02511.1| transcriptional regulator [Clostridium botulinum H04402 065]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +  ++  +S++E G +   I+ +  +A+ L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|298369856|ref|ZP_06981172.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281316|gb|EFI22805.1| hypothetical protein HMPREF9016_01190 [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 153

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 2   PRRKRDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           PRRK      +  I     R      F ++R +   TQ E+    G  Q ++S +E  K 
Sbjct: 59  PRRKAAMDRAAAKIADKITRKAGGETFVSLRMKKGFTQSELAAAAGLRQPYLSRIENSKQ 118

Query: 60  TINIDNMIILAHTLDTPLWKL 80
           +++ + +  LA+ L     ++
Sbjct: 119 SLHNETVQKLANALGVSPLEV 139


>gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 200

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++  +T  E+  RTG ++S +S LE+G+    ++ +++LA   D PL  L+
Sbjct: 12 VGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDLV 71


>gi|170755017|ref|YP_001780261.1| cupin domain-containing protein [Clostridium botulinum B1 str.
          Okra]
 gi|169120229|gb|ACA44065.1| cupin domain protein [Clostridium botulinum B1 str. Okra]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +  ++  +S++E G +   I+ +  +A+ L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|168183318|ref|ZP_02617982.1| cupin domain protein [Clostridium botulinum Bf]
 gi|237793956|ref|YP_002861508.1| cupin domain-containing protein [Clostridium botulinum Ba4 str.
          657]
 gi|182673516|gb|EDT85477.1| cupin domain protein [Clostridium botulinum Bf]
 gi|229263990|gb|ACQ55023.1| cupin domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +  ++  +S++E G +   I+ +  +A+ L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|206967661|ref|ZP_03228617.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|218236090|ref|YP_002365489.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228919545|ref|ZP_04082909.1| Transcriptional regulator [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228951193|ref|ZP_04113308.1| Transcriptional regulator [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228957113|ref|ZP_04118883.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229042556|ref|ZP_04190299.1| Transcriptional regulator [Bacillus cereus AH676]
 gi|229068379|ref|ZP_04201682.1| Transcriptional regulator [Bacillus cereus F65185]
 gi|229078006|ref|ZP_04210615.1| Transcriptional regulator [Bacillus cereus Rock4-2]
 gi|229149032|ref|ZP_04277277.1| Transcriptional regulator [Bacillus cereus m1550]
 gi|229177222|ref|ZP_04304609.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|229188901|ref|ZP_04315934.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|206736581|gb|EDZ53728.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|218164047|gb|ACK64039.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228594606|gb|EEK52392.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|228606228|gb|EEK63662.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|228634572|gb|EEK91156.1| Transcriptional regulator [Bacillus cereus m1550]
 gi|228705344|gb|EEL57721.1| Transcriptional regulator [Bacillus cereus Rock4-2]
 gi|228714840|gb|EEL66712.1| Transcriptional regulator [Bacillus cereus F65185]
 gi|228726775|gb|EEL77989.1| Transcriptional regulator [Bacillus cereus AH676]
 gi|228802560|gb|EEM49407.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228808490|gb|EEM54994.1| Transcriptional regulator [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228840188|gb|EEM85465.1| Transcriptional regulator [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 67

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|153940779|ref|YP_001389988.1| cupin domain-containing protein [Clostridium botulinum F str.
          Langeland]
 gi|152936675|gb|ABS42173.1| cupin domain protein [Clostridium botulinum F str. Langeland]
 gi|295318072|gb|ADF98449.1| cupin domain protein [Clostridium botulinum F str. 230613]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +  ++  +S++E G +   I+ +  +A+ L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|148378625|ref|YP_001253166.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153934328|ref|YP_001383012.1| DNA-binding cupin domain-containing protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153935310|ref|YP_001386559.1| helix-turn-helix domain-containing protein [Clostridium botulinum
          A str. Hall]
 gi|168177994|ref|ZP_02612658.1| cupin domain protein [Clostridium botulinum NCTC 2916]
 gi|226947877|ref|YP_002802968.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|148288109|emb|CAL82177.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152930372|gb|ABS35872.1| DNA-binding/cupin domain protein [Clostridium botulinum A str.
          ATCC 19397]
 gi|152931224|gb|ABS36723.1| helix-turn-helix domain protein [Clostridium botulinum A str.
          Hall]
 gi|182671201|gb|EDT83175.1| cupin domain protein [Clostridium botulinum NCTC 2916]
 gi|226840881|gb|ACO83547.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +  ++  +S++E G +   I+ +  +A+ L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPYTLL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|229541873|ref|ZP_04430933.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
 gi|229326293|gb|EEN91968.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
          Length = 180

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R +R +  LT K++  +T     ++S++E G S++ I ++  +A +L   +     P
Sbjct: 6  KKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEISYFFNP 65


>gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 124

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75
          F +  + +R     +Q+E+ + +G +++ IS  E  ++         + N+  LA  LD 
Sbjct: 13 FASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDV 72

Query: 76 PLWKLL 81
          P   L+
Sbjct: 73 PPIALM 78


>gi|134299415|ref|YP_001112911.1| cupin 2 domain-containing protein [Desulfotomaculum reducens
          MI-1]
 gi|134052115|gb|ABO50086.1| Cupin 2, conserved barrel domain protein [Desulfotomaculum
          reducens MI-1]
          Length = 180

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           IF    R +R +  +T K++  +TG + S++S++E G S++ I ++  +A  L+ 
Sbjct: 3  EIF-EKVRTLRNQKNMTLKDLSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNV 57


>gi|325674989|ref|ZP_08154676.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|325554575|gb|EGD24250.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 182

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+ R+ A LT + +   TG  +S++S++E G ST +I   + +A  LD  + +L 
Sbjct: 5  LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGISTPSIAVALKIARALDADVSQLF 60


>gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
 gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
          Length = 218

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R+ R++  +T  ++ N TG +   +S++E G ++ ++  + +LA+ L  P+    +
Sbjct: 35 GREVRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSLTTLQLLANALSVPITSFFR 94


>gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
          Length = 198

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
              ER       +  R +R+E  L+  ++ +    +QS IS++E G  + ++ ++  +A
Sbjct: 9  PSAEERPLEKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAISPSLASINAIA 68

Query: 71 HTLDTPLWKLL 81
            L+ P+  L 
Sbjct: 69 SALNVPITALF 79


>gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile]
 gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 179

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L +  
Sbjct: 4  GEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLREFF 62


>gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1]
 gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + R  R+ + ++  E+  R G A+S +S+LE+G    +++ +  L   LD  + +LL 
Sbjct: 11 GPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQLLD 70

Query: 83 P 83
          P
Sbjct: 71 P 71


>gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 178

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R++  LT + +  +TG  +S++S++E G+ST +I   + +A  LD  + +L 
Sbjct: 5  LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60


>gi|150389852|ref|YP_001319901.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149949714|gb|ABR48242.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 64

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R E   TQ+++ N  G  +  IS +E GK   +I   I +A  L+  L  L 
Sbjct: 4  SRMKVARVEKDFTQEDLANIVGVTRQTISLIEGGKYNPSIKLCIEIAKALNKTLNDLF 61


>gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 252

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +        +R    L+Q+++  +   ++  +S+ ETG+S  +++ +I LA      + +
Sbjct: 37 LTLGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSVPDLEKIIKLADLFGVNVDE 96

Query: 80 LLK 82
          L++
Sbjct: 97 LVR 99


>gi|313894180|ref|ZP_07827745.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
 gi|313441004|gb|EFR59431.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N    R  A +TQ ++   TG  QS IS++E G    ++  +  +AH     L
Sbjct: 32 QNIVEARLAAHMTQMQLSELTGITQSDISKIENGNGNPSLKTLQKIAHAFGKKL 85


>gi|289422654|ref|ZP_06424494.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289156833|gb|EFD05458.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 72

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+    N+   IRKE   TQ ++     F+Q +IS +E G    +I   I LA  L    
Sbjct: 2  EKFQVCNSVSVIRKERGYTQLKLAKLADFSQQYISNIERGVLIPSIAKAIKLAEVLGVCH 61

Query: 78 WKLL 81
           +L 
Sbjct: 62 GELF 65


>gi|126651763|ref|ZP_01723965.1| transcriptional regulator [Bacillus sp. B14905]
 gi|126591441|gb|EAZ85548.1| transcriptional regulator [Bacillus sp. B14905]
          Length = 179

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R IRK  +++ +E+ + +  ++  + ++E G++   ++ +  +   L  PL  LL
Sbjct: 7  VGMNLREIRKNKRMSLEELASISNVSKLTLGKIERGETNPTVNILWKICRGLHIPLVSLL 66


>gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena
          XCL-2]
 gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena
          XCL-2]
          Length = 198

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               N RK+  LT  +I  ++G ++  +S++E G+ + ++D+++ ++ TL  P+    +
Sbjct: 14 GKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKISRTLGVPISSFFR 73


>gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 206

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    D +  +   LD    +LL
Sbjct: 6  LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNELL 65


>gi|228915036|ref|ZP_04078637.1| hypothetical protein bthur0012_22610 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228844620|gb|EEM89670.1| hypothetical protein bthur0012_22610 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 505

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+   P L  A   + +      R++R E  +T  ++    G A S +S LE GK    I
Sbjct: 11 RRPPGPALPLAEEPDALTIGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPTI 70

Query: 64 DNMIILAHTLDTPLWKLLKP 83
            +  +A  L   +  LL P
Sbjct: 71 ARLQAVARALGAGVEDLLDP 90


>gi|291542798|emb|CBL15908.1| Helix-turn-helix [Ruminococcus bromii L2-63]
          Length = 117

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R +A LTQ+++    G + + +S +ETG + +++  ++ +A+ L      
Sbjct: 6  KAIGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANALGITSDD 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|240171997|ref|ZP_04750656.1| transcriptional regulator [Mycobacterium kansasii ATCC 12478]
          Length = 174

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+   LT +++  +TG  +S++S++E G ST +I   + ++  LD  + +L 
Sbjct: 5  LRAVRRHRGLTLEQLAEQTGLTKSYLSKIERGHSTPSIAVALKVSRALDVDVGRLF 60


>gi|238025656|ref|YP_002909888.1| Transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880321|gb|ACR32652.1| Transcriptional regulator [Burkholderia glumae BGR1]
          Length = 101

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLW 78
          +     + +R+   +TQK++  R G + S++SE+ETG  K +I ID +   A     P+ 
Sbjct: 1  MLFQALKLLRRYHGMTQKDLAARLGISNSYLSEIETGVKKDSITIDLLEKYAAVFGIPVS 60

Query: 79 KLL 81
           LL
Sbjct: 61 SLL 63


>gi|284991527|ref|YP_003410081.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284064772|gb|ADB75710.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 503

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 30/53 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ R+   LTQ+++  R G +QS ++ +E G   + ++ +  L+  L+  L+
Sbjct: 8  VRDARRHRGLTQQQLAERLGTSQSAVARIEQGGQNLTLELLGRLSEALERELF 60


>gi|228908186|ref|ZP_04072033.1| hypothetical protein bthur0013_23470 [Bacillus thuringiensis IBL
          200]
 gi|228851458|gb|EEM96265.1| hypothetical protein bthur0013_23470 [Bacillus thuringiensis IBL
          200]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ K++ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 10 QLILAKNLKTIREKEKISLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 69

Query: 79 KLL 81
           L+
Sbjct: 70 SLI 72


>gi|167760581|ref|ZP_02432708.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC
          35704]
 gi|167661802|gb|EDS05932.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC
          35704]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           I   N + IRK   L+ ++    T  ++S +S+LE G+    I  +  L+  L  P
Sbjct: 6  QIIAENLKEIRKGKGLSLEQASALTSISKSMLSQLERGEVNPTISTVYKLSLGLKVP 62


>gi|49479309|ref|YP_036566.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|49330865|gb|AAT61511.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|52143041|ref|YP_083788.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51976510|gb|AAU18060.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319]
 gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319]
          Length = 181

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RKE  L+ +E+        S +S++E G +  +I  + +LA +LD P 
Sbjct: 2  ENIDIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKLLAKSLDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|260655689|ref|ZP_05861162.1| toxin-antitoxin system, antitoxin component, Xre family
          [Jonquetella anthropi E3_33 E1]
 gi|260629606|gb|EEX47800.1| toxin-antitoxin system, antitoxin component, Xre family
          [Jonquetella anthropi E3_33 E1]
          Length = 123

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R++RK  +LTQ+++   T  ++ +I  LE+ + + ++  +  LA  L+     
Sbjct: 1  MSFGLRLRSLRKAHQLTQQQLAEVTEVSRIYIQALESNRRSPSMKLLHKLADALEVDPAD 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri
          SD2112]
 gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri
          SD2112]
          Length = 108

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
             N R  R E  +TQ+++ N TG + ++IS LE G  + ++   ++ +A  L T + KL
Sbjct: 4  LGANIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDKL 63

Query: 81 L 81
          +
Sbjct: 64 V 64


>gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
 gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|30262447|ref|NP_844824.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527739|ref|YP_019088.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185288|ref|YP_028540.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|165868486|ref|ZP_02213146.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167631841|ref|ZP_02390168.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641366|ref|ZP_02399617.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170687094|ref|ZP_02878313.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170704501|ref|ZP_02894967.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177649164|ref|ZP_02932166.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190565652|ref|ZP_03018572.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196033739|ref|ZP_03101150.1| DNA-binding protein [Bacillus cereus W]
 gi|196039938|ref|ZP_03107241.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196043346|ref|ZP_03110584.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|218903579|ref|YP_002451413.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225864404|ref|YP_002749782.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227814743|ref|YP_002814752.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228927494|ref|ZP_04090549.1| hypothetical protein bthur0010_22050 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228936937|ref|ZP_04099680.1| hypothetical protein bthur0009_53450 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|229091415|ref|ZP_04222628.1| hypothetical protein bcere0021_22260 [Bacillus cereus Rock3-42]
 gi|229121988|ref|ZP_04251206.1| hypothetical protein bcere0016_22860 [Bacillus cereus 95/8201]
 gi|229184650|ref|ZP_04311851.1| hypothetical protein bcere0004_22110 [Bacillus cereus BGSC 6E1]
 gi|229600709|ref|YP_002866774.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254685025|ref|ZP_05148885.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722431|ref|ZP_05184219.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254737473|ref|ZP_05195176.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743343|ref|ZP_05201028.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751788|ref|ZP_05203825.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254760306|ref|ZP_05212330.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30257078|gb|AAP26310.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502887|gb|AAT31563.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179215|gb|AAT54591.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164715212|gb|EDR20729.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510643|gb|EDR86038.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167532139|gb|EDR94775.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170130302|gb|EDS99163.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669145|gb|EDT19889.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084238|gb|EDT69296.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190563679|gb|EDV17644.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195993419|gb|EDX57376.1| DNA-binding protein [Bacillus cereus W]
 gi|196025655|gb|EDX64324.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196029197|gb|EDX67801.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218535334|gb|ACK87732.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225787891|gb|ACO28108.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227002907|gb|ACP12650.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228598863|gb|EEK56482.1| hypothetical protein bcere0004_22110 [Bacillus cereus BGSC 6E1]
 gi|228661516|gb|EEL17138.1| hypothetical protein bcere0016_22860 [Bacillus cereus 95/8201]
 gi|228691926|gb|EEL45670.1| hypothetical protein bcere0021_22260 [Bacillus cereus Rock3-42]
 gi|228822716|gb|EEM68605.1| hypothetical protein bthur0009_53450 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228832213|gb|EEM77795.1| hypothetical protein bthur0010_22050 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|229265117|gb|ACQ46754.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG]
 gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF]
          Length = 210

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P +  +   +++A  R           +R  A LT   +    G +Q  +S++E G    
Sbjct: 11 PDQDEEGGTVAEADERGTDGLGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNP 70

Query: 62 NIDNMIILAHTLDTP 76
          +   +I LA  L  P
Sbjct: 71 SYTTLIKLADALRVP 85


>gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family
          [Leptotrichia hofstadii F0254]
 gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family
          [Leptotrichia hofstadii F0254]
          Length = 203

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + +RK+  LTQ+ +  +TG + + I++ E G +T +I+N+ +LA      + 
Sbjct: 7  KENFKEILKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNTPSIENLRVLADFFKVSIR 66

Query: 79 KLLK 82
            L+
Sbjct: 67 NFLE 70


>gi|320012087|gb|ADW06937.1| Cupin 2 conserved barrel domain protein [Streptomyces
          flavogriseus ATCC 33331]
          Length = 194

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|167769076|ref|ZP_02441129.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM
          17241]
 gi|167668716|gb|EDS12846.1| hypothetical protein ANACOL_00399 [Anaerotruncus colihominis DSM
          17241]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  +  R E K++ +++  RTG   S +S++E      +I+ + ++A  L+ P++K  
Sbjct: 7  GSVLQASRGEKKISLRQLAERTGLTASMLSQIERNLVNPSINTLKVIAAALEIPMYKFF 65


>gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
 gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum
          subsp. nucleatum ATCC 23726]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. vincentii ATCC 49256]
 gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27]
 gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum
          subsp. vincentii ATCC 49256]
 gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
 gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2]
 gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  ++ +E+  +   + S++S++E GK++ +I+N+  +AHTLD  +  
Sbjct: 1  MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|238023508|ref|YP_002907740.1| DNA-binding protein [Burkholderia glumae BGR1]
 gi|237878173|gb|ACR30505.1| DNA-binding protein [Burkholderia glumae BGR1]
          Length = 201

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          RR    P    A            + +R E KLT  ++    G ++S +SE+E  K+   
Sbjct: 8  RRGAPAPVTDAATPPR---VGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPT 64

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          I     L + L   L +L  P
Sbjct: 65 IAVAWRLTNALGISLDELFAP 85


>gi|225374410|ref|ZP_03751631.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans
          DSM 16841]
 gi|225213648|gb|EEG96002.1| hypothetical protein ROSEINA2194_00025 [Roseburia inulinivorans
          DSM 16841]
          Length = 86

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          ++ HL+   L  R   V   ++ RK   +TQ+ +  R G  +S IS  E+GK   ++D +
Sbjct: 11 EKKHLAGQQLTPRYEVVQQLKDARKAQDMTQEVLAERVGTKKSNISRFESGKYNPSLDFL 70

Query: 67 IILAHTLDTP 76
          I +A +L   
Sbjct: 71 IKVAGSLGKQ 80


>gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400]
 gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain
          [Burkholderia xenovorans LB400]
          Length = 204

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+  E+  R G +   +S++E  K+  ++  +  L   L+ PL  LL
Sbjct: 19 VGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALL 78

Query: 82 K 82
          +
Sbjct: 79 E 79


>gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 181

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R    + +IS+LE   ++ +I  +  +       + +  
Sbjct: 4  GERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQEFF 62


>gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 191

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 22/55 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                 +R  A LT   +    G +Q  +S++E G    +   +I LA  L  P
Sbjct: 12 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVP 66


>gi|228921132|ref|ZP_04084463.1| hypothetical protein bthur0011_21390 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228838525|gb|EEM83835.1| hypothetical protein bthur0011_21390 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 211

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  I  +  +A+ L     
Sbjct: 31 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTITTIWKIANGLKVSFT 90

Query: 79 KLL 81
           L+
Sbjct: 91 SLI 93


>gi|206973843|ref|ZP_03234761.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217959938|ref|YP_002338494.1| DNA-binding protein [Bacillus cereus AH187]
 gi|222096025|ref|YP_002530082.1| DNA-binding protein [Bacillus cereus Q1]
 gi|206747999|gb|EDZ59388.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217067028|gb|ACJ81278.1| DNA-binding protein [Bacillus cereus AH187]
 gi|221240083|gb|ACM12793.1| DNA-binding protein [Bacillus cereus Q1]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104]
 gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC
          25291]
 gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor
          domain [Mycobacterium avium 104]
          Length = 178

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R++  LT + +  +TG  +S++S++E G+ST +I   + +A  LD  + +L 
Sbjct: 5  LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLF 60


>gi|320093956|ref|ZP_08025785.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319979114|gb|EFW10628.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 80

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N R    R    L+Q  +  + G  +  IS +E+G     I   + +   L   L  L
Sbjct: 18 AKNLRMKAARAGRGLSQASLAEQVGVTRQTISAVESGDYNPTIALCVRICRALGVTLDDL 77

Query: 81 L 81
           
Sbjct: 78 F 78


>gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R  A+++  E+   +G + S +S +E G  + +++ +  LA  L  P  +  
Sbjct: 10 GAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 68


>gi|210624072|ref|ZP_03294172.1| hypothetical protein CLOHIR_02124 [Clostridium hiranonis DSM
          13275]
 gi|210153205|gb|EEA84211.1| hypothetical protein CLOHIR_02124 [Clostridium hiranonis DSM
          13275]
          Length = 189

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     RN RK   +T +++ + TG +  +IS++E      ++ ++  ++ +LD P + L
Sbjct: 1  MLGERIRNFRKNKSITLQQLSDETGLSIGYISQIERNLVDPSLSSLRKISKSLDIPTYLL 60

Query: 81 LK 82
          ++
Sbjct: 61 ME 62


>gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp.
          Marseille]
 gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp.
          Marseille]
          Length = 207

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +K D+   + +I  +          +R     TQ ++   TGF + ++S++E  K  
Sbjct: 1  MTSKKADKQDSASSIEIQ---LGGRISKLRTSRGFTQDKLALETGFTKGYLSKIENSKVI 57

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
            I  ++ +A  LDT L  LL+P
Sbjct: 58 PPIGTLVKIAQVLDTDLSALLEP 80


>gi|47565769|ref|ZP_00236809.1| transcriptional regulator, merR family [Bacillus cereus G9241]
 gi|47557405|gb|EAL15733.1| transcriptional regulator, merR family [Bacillus cereus G9241]
          Length = 186

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+  +T +E  +  G + S IS++E G +   +  + ++A  L+ PL+ L 
Sbjct: 6  LGQTVLSYRKKNNMTIREFADYAGISTSLISQIERGHANPFLSVLELIAKALNVPLFTLF 65


>gi|298384446|ref|ZP_06994006.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|298262725|gb|EFI05589.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 103

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 14 AILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
              ER  F              + R+EAK+TQ E+  R    +S+IS +E+G    ++ 
Sbjct: 22 PGTPEREKFDEEAYAFYTGQILLDARREAKVTQSELAKRINATKSYISRIESGAINPSVG 81

Query: 65 NMIILAHTLDTPLWKLLKP 83
              + + L   + +++KP
Sbjct: 82 TFYRIINALGLKI-EIVKP 99


>gi|265764159|ref|ZP_06092727.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256767|gb|EEZ28113.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163497|emb|CBW23048.1| putative DNA binding protein [Bacteroides fragilis 638R]
          Length = 103

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +    R+ RK+ K+TQ+E+  + G A+S+I+ +E G++ I I +   +A  L   
Sbjct: 43 YGEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGIE 97


>gi|229100244|ref|ZP_04231136.1| hypothetical protein bcere0020_54410 [Bacillus cereus Rock3-29]
 gi|229115912|ref|ZP_04245309.1| hypothetical protein bcere0017_22030 [Bacillus cereus Rock1-3]
 gi|228667574|gb|EEL23019.1| hypothetical protein bcere0017_22030 [Bacillus cereus Rock1-3]
 gi|228683176|gb|EEL37162.1| hypothetical protein bcere0020_54410 [Bacillus cereus Rock3-29]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str.
          Eklund]
 gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str.
          Eklund]
          Length = 210

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E  LTQ E+    G ++  I   E G    NID ++ ++  L   +  LL
Sbjct: 3  LGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGTRIPNIDILLNISKALGVTINNLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|146343555|ref|YP_001208603.1| anaerobic benzoate catabolism transcriptional regulator
          [Bradyrhizobium sp. ORS278]
 gi|146196361|emb|CAL80388.1| Shikimate kinase [Bradyrhizobium sp. ORS278]
          Length = 307

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R  A +++K +   +G ++ +I++LE+GK  ++I  +  +A+ ++ PL  ++
Sbjct: 25 LGQRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDII 84


>gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 180

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N RN RK+  +TQ+ +  + G ++  +S+ E+GK     + +  L+  L     +L+
Sbjct: 4  GENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADRLI 62


>gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC
          29799]
 gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC
          29799]
          Length = 89

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  + +  R++RK+  LTQ+++  +   +  +I+++ETGK T  ++  +  A   D  L 
Sbjct: 5  REDYGSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLD 64

Query: 79 KLL 81
           LL
Sbjct: 65 YLL 67


>gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens
          GS-15]
 gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens
          GS-15]
          Length = 181

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ NR    + +IS+LE   ++ +I  +  +       + +  
Sbjct: 4  GERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQEFF 62


>gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1]
 gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1]
          Length = 206

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 31/67 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E +      R +R+E  ++ + +   +G + + +S +E G ++ ++  +  LA  L  
Sbjct: 7  QAESIDVGQRLRALREERNISIRALARLSGLSANALSMIERGMTSPSVSTLNKLAIALKV 66

Query: 76 PLWKLLK 82
          P+    +
Sbjct: 67 PVTAFFR 73


>gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 186

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +  R  R  A L+  E+  R G A+S +S+LE G     ++ +  L+  L+ P   
Sbjct: 10 EVIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGNPGVETLWALSVALNVPFAT 69

Query: 80 LLKP 83
          L++P
Sbjct: 70 LVEP 73


>gi|148378758|ref|YP_001253299.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933921|ref|YP_001383147.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937706|ref|YP_001386695.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288242|emb|CAL82316.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929965|gb|ABS35465.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933620|gb|ABS39119.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 64

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R E  L+Q+++  + G  +  IS +E+GK   ++   I +   L+  L  L
Sbjct: 1  MVNRKMKIARVECDLSQQQLAEKVGVTRQTISMIESGKYNPSLKLCIGICEVLNKTLNDL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|317499839|ref|ZP_07958077.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898741|gb|EFV20774.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 102

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R ++ L+QKE+    G A+S  S  E+G    N++ +  +A  L+     LL
Sbjct: 5  FNENLKEARIKSGLSQKEVSENIGVAKSTYSLYESGNREPNVNTIKKIADVLNVSADTLL 64


>gi|312897732|ref|ZP_07757148.1| LexA repressor family protein [Megasphaera micronuciformis F0359]
 gi|310621116|gb|EFQ04660.1| LexA repressor family protein [Megasphaera micronuciformis F0359]
          Length = 218

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-------INIDNMIILAHTLDTPLW 78
           R  R+   L+ +E   R G ++++IS +E GK+T        +ID M  +A  L+  L 
Sbjct: 8  IREYRQSHGLSMEEFGKRVGLSKAYISLIERGKNTRSNKPIVPSIDTMKAIADGLEMDLD 67

Query: 79 KLLK 82
           LL+
Sbjct: 68 VLLR 71


>gi|283783609|ref|YP_003374363.1| toxin-antitoxin system, antitoxin component, Xre family
          [Gardnerella vaginalis 409-05]
 gi|283442067|gb|ADB14533.1| toxin-antitoxin system, antitoxin component, Xre family
          [Gardnerella vaginalis 409-05]
          Length = 94

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA+  ER +   +    RK A LTQ E+  +TG +QS IS LE G     I  +  +A+ 
Sbjct: 22 DALQPERDL-TMSLVMARKRAGLTQAELSEKTGISQSDISRLENGSRNPTIALLNRIANA 80

Query: 73 LD 74
          L+
Sbjct: 81 LN 82


>gi|256545000|ref|ZP_05472368.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC
          51170]
 gi|256399296|gb|EEU12905.1| XRE family transcriptional regulator [Anaerococcus vaginalis ATCC
          51170]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++F N+ + +RKE   +Q+++ +  G +++ IS +ETG+        +IL   L+   
Sbjct: 3  DKLVFKNHLKEVRKEKGYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|212696965|ref|ZP_03305093.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676053|gb|EEB35660.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 212

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +N R    L+ K++  +   + S +S++E+GK+  +++ + +++  L  P++ L 
Sbjct: 31 LGKNIKNSRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLF 90


>gi|163942112|ref|YP_001646996.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229013578|ref|ZP_04170711.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
 gi|163864309|gb|ABY45368.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228747738|gb|EEL97608.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048]
          Length = 194

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  + ++A+ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 75


>gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28]
 gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
          Length = 157

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|210622345|ref|ZP_03293114.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM
          13275]
 gi|210154333|gb|EEA85339.1| hypothetical protein CLOHIR_01062 [Clostridium hiranonis DSM
          13275]
          Length = 68

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++ +I  NN +  R E KL+Q  +    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKDELILKNNLKQARAEKKLSQAALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555]
 gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016]
 gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555]
 gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 261

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + IR+   LTQK++  + G     I+  E  K   +I+ +  +A  LD  +  L
Sbjct: 3  VGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENNKREPSIETLNKIAKALDVTINDL 61


>gi|84501143|ref|ZP_00999378.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
 gi|84391210|gb|EAQ03628.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597]
          Length = 207

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E ++  +  R +RK    T ++     G A+S +S++E G+ +   D +  LA  L   +
Sbjct: 23 EPLVLGDRVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALRKLATGLGISV 82

Query: 78 WKLLKP 83
           +L  P
Sbjct: 83 PQLFTP 88


>gi|254475134|ref|ZP_05088520.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214029377|gb|EEB70212.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 186

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R IR++A L+  +    TG +++ + ++E G+S+  I  +  +A     PL  L+
Sbjct: 9  NLREIRQDAGLSLSKAAEITGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLSALI 65


>gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
          Length = 111

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R    L+Q E+  +   ++  +S+ E G++T +ID ++ LA      L  
Sbjct: 4  KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 63

Query: 80 LL 81
          L+
Sbjct: 64 LV 65


>gi|16126938|ref|NP_421502.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
          CB15]
 gi|221235724|ref|YP_002518161.1| Xre family transcriptional regulator [Caulobacter crescentus
          NA1000]
 gi|13424292|gb|AAK24670.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
          CB15]
 gi|220964897|gb|ACL96253.1| transcriptional regulator, Xre family [Caulobacter crescentus
          NA1000]
          Length = 76

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++   N R +R+   + Q E+ +      +++S +E GK  I++  +  LA  L     
Sbjct: 9  RLVVGANIRALREARGVPQDELAHVAEIHPTYLSGIENGKRNISLRVLERLAAALVVSEA 68

Query: 79 KLLK 82
          +L++
Sbjct: 69 ELVR 72


>gi|148547381|ref|YP_001267483.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148511439|gb|ABQ78299.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 272

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            + R +R++A L+Q E+   TG +Q  +S +ETG++  +   +  L   LD PL +
Sbjct: 18 GQHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASPGTLHALLSALDAPLER 74


>gi|291562330|emb|CBL41146.1| Helix-turn-helix [butyrate-producing bacterium SS3/4]
          Length = 96

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F     ++R    +TQ+E+  R G  ++  +S +E G+   +ID +I L+  L      L
Sbjct: 8  FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERNCSIDLLIELSCILHVSTDYL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
 gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
          Length = 188

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL+
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72


>gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 193

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                E  I     + +R+E  LT  E+  R   +   IS +E G  + ++  +  LA 
Sbjct: 3  DKKTETELEI-GRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHVSPSLGTLQALAD 61

Query: 72 TLDTPLWKLL 81
           L   +  L 
Sbjct: 62 ALSVSMMALF 71


>gi|221210345|ref|ZP_03583325.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221169301|gb|EEE01768.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
          Length = 90

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R   + +Q+ +       +++IS +E G +  +I+ +  + ++L+  L +L  
Sbjct: 2  GKRIKECRHATEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLNVTLAELFA 61

Query: 83 P 83
          P
Sbjct: 62 P 62


>gi|84516199|ref|ZP_01003559.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
 gi|84509895|gb|EAQ06352.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
          Length = 207

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 35/78 (44%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R       A + + +      R +RK    T ++   + G A+S +S++E G+ +   D 
Sbjct: 11 RIAHENGSASVAQPLDLGARVRELRKARDWTLEQAARQAGLARSTLSKIENGQMSPTYDA 70

Query: 66 MIILAHTLDTPLWKLLKP 83
          +  LA  LD  + +L  P
Sbjct: 71 LKKLAVGLDISVPQLFTP 88


>gi|47570141|ref|ZP_00240798.1| transcriptional regulator, Cro/CI family, putative [Bacillus
          cereus G9241]
 gi|47553205|gb|EAL11599.1| transcriptional regulator, Cro/CI family, putative [Bacillus
          cereus G9241]
          Length = 185

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|289673453|ref|ZP_06494343.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae FF5]
          Length = 149

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L+         +  R+  +L   ++    G +Q  +S++E  + + ++DN+
Sbjct: 2  NMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNL 61

Query: 67 IILAHTLDTPLWKLL 81
            L   L  P+ KL 
Sbjct: 62 SRLCDVLGMPMSKLF 76


>gi|94314004|ref|YP_587213.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93357856|gb|ABF11944.1| transcriptional regulator, XRE family with cupin sensor domain
          [Cupriavidus metallidurans CH34]
          Length = 251

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +      H+  +   +R  F    R  RK    T   +   +G + + IS  E G+  + 
Sbjct: 2  KETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLALG 61

Query: 63 IDNMIILAHTLDTPLWKLL 81
           DN   +   L   + ++ 
Sbjct: 62 YDNFAAIGKALQMDMGEMF 80


>gi|329943947|ref|ZP_08292216.1| restriction-modification system control element Bcll [Actinomyces
          sp. oral taxon 170 str. F0386]
 gi|328531380|gb|EGF58222.1| restriction-modification system control element Bcll [Actinomyces
          sp. oral taxon 170 str. F0386]
          Length = 61

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 34/56 (60%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R++  L+Q+++  RT    S+I ++E G+  +++ N++ +AH LDT    L+
Sbjct: 1  MRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIAHALDTDAGGLV 56


>gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR]
 gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR]
          Length = 255

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R+  I     +  RK   LTQKE+  R G +   + ++E GK   ++  +  ++  L  
Sbjct: 134 ERKNSIIAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNASLKTIEKISQVLGV 193

Query: 76  PLWKLL 81
            +  L+
Sbjct: 194 SVCYLI 199



 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           ++   +  R +R+E  L+  +  N TG + +++SELE G +   +  +  +A  L  P
Sbjct: 69  KLNIGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTVPAVGTLKKIAACLGVP 126


>gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 196

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 15 QSLARNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 74

Query: 80 LL 81
          LL
Sbjct: 75 LL 76


>gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 255

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+E   T +E+  R   + S++SE+E G    ++  +  LA  L+    +L++
Sbjct: 5  GEQIRALREERGYTLQELARRANLSFSYLSEIERGSKKPSLKTIEKLAAVLNVAKSQLVE 64



 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N  R +R E  L+ +E+   +  + S++SE+E G    +++ +  ++ +LD     
Sbjct: 72  LTLGNKIRMLRNEKALSLQELSTTSEISLSYLSEIERGTIYPSLNTLKKISESLDVSASV 131

Query: 80  LL 81
           L+
Sbjct: 132 LM 133



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             N  + +R++   TQ ++    G     I ++E  K   ++  +  L+  L   
Sbjct: 139 LGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKVQPSLKTLEKLSGVLGIS 193


>gi|218133469|ref|ZP_03462273.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990844|gb|EEC56850.1| hypothetical protein BACPEC_01334 [Bacteroides pectinophilus ATCC
          43243]
          Length = 143

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 3  RRKRDEPHLSDAILRE---RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          R+++ E    +        R I     + +R+   ++Q ++   T  + S+IS +E  K 
Sbjct: 8  RKRKQEVQSMNQTQTSVNHRQI-GYRIKEVRELNHISQAQLAEMTDLSVSYISHIENAKR 66

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
            +++++I + + L   + +LL
Sbjct: 67 KASLESIIRIVNALGITVDELL 88


>gi|217966210|ref|YP_002351888.1| gp33 [Listeria monocytogenes HCC23]
 gi|217335480|gb|ACK41274.1| gp33 [Listeria monocytogenes HCC23]
 gi|307572181|emb|CAR85360.1| HTH-type transcriptional regulator, putative [Listeria
          monocytogenes L99]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  + +RK    TQ++I    G ++   S +E G++  +++ ++ LA+        L
Sbjct: 1  MFGNRLKQLRKNNNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFGVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|309789599|ref|ZP_07684180.1| BsaWI endonuclease [Oscillochloris trichoides DG6]
 gi|308228335|gb|EFO81982.1| BsaWI endonuclease [Oscillochloris trichoides DG6]
          Length = 366

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF  N +  R++   TQ+++    G     IS +ETG++      +  +A  L+   +
Sbjct: 4  KEIFGKNVQFKRRQINWTQEDLAEAVGVDTRTISRIETGETATEFTTIEKIASALNIDAY 63

Query: 79 KLL 81
          +L 
Sbjct: 64 QLF 66


>gi|229062186|ref|ZP_04199510.1| Transcriptional regulator, Xre [Bacillus cereus AH603]
 gi|228717169|gb|EEL68845.1| Transcriptional regulator, Xre [Bacillus cereus AH603]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74]
 gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74]
          Length = 226

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  LDT L +L
Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|157324992|ref|YP_001468418.1| gp33 [Listeria phage A500]
 gi|66733000|gb|AAY52819.1| gp33 [Listeria phage A500]
          Length = 142

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  + +RK    TQ++I    G ++   S +E G++  +++ ++ LA+  +     L
Sbjct: 1  MFGNRLKQLRKNTNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|332295759|ref|YP_004437682.1| helix-turn-helix domain protein [Thermodesulfobium narugense DSM
          14796]
 gi|332178862|gb|AEE14551.1| helix-turn-helix domain protein [Thermodesulfobium narugense DSM
          14796]
          Length = 184

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I  NN + IR+E KL+  ++   TG ++S + ++E G+S   +  +  +   L      
Sbjct: 6  FIIANNLKKIREERKLSLDKLSEITGVSKSMLGQIERGESNPTVTTLKKITTGLKISFTA 65

Query: 80 LLK 82
          LL+
Sbjct: 66 LLE 68


>gi|330448085|ref|ZP_08311733.1| helix-turn-helix family protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328492276|dbj|GAA06230.1| helix-turn-helix family protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 208

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  + ++      I   ++      + IR    LT +E    TG A+S +S++E  + + 
Sbjct: 11 PSMRVEKEQSPQPIAPLKL--GERLKEIRVSHGLTLEEASKLTGLARSTLSKIENEQISP 68

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 69 TFQAMQKLATGLAIDIPQLFEP 90


>gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC
          15579]
 gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC
          15579]
          Length = 111

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  + +R+E  +TQ+++       +  +   E G +   ID ++ +A   +  L  L
Sbjct: 19 LFGDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDYL 78

Query: 81 L 81
          L
Sbjct: 79 L 79


>gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 141

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R    LTQ  I N TG +   IS +ETG + + +  +I LA+ LD  + +
Sbjct: 8  KAIGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANVLDVSVDE 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|224367960|ref|YP_002602123.1| transcriptional regulator (Cro/CI family protein)
          [Desulfobacterium autotrophicum HRM2]
 gi|223690676|gb|ACN13959.1| transcriptional regulator (Cro/CI family protein)
          [Desulfobacterium autotrophicum HRM2]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  I   N +  R   +LT +E+ +RTG  + ++S++E  +       +  +A  L+  +
Sbjct: 2  DEKIISVNIKRFRTSKRLTLQELADRTGLTKGYLSKVERSQKAPPYSTLSKIAAALEVEI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 TTLL 65


>gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 195

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P           AI           R +R+   ++   +  + G  ++ +S LE G   
Sbjct: 14 VPGHPATADDDPAAI-------GRRVRALREARGISLSALARQAGVGKATLSGLENGTRN 66

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            ++ +  +   L  PL  +L
Sbjct: 67 PTLETLYAITAQLGVPLTAVL 87


>gi|298252935|ref|ZP_06976729.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1]
 gi|297533299|gb|EFH72183.1| hypothetical protein GV51_1311 [Gardnerella vaginalis 5-1]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           DA+  ER +   +    RK A LTQ E+  +TG +QS IS LE G     I  +  +A+ 
Sbjct: 86  DALQPERDL-TMSLVMARKRAGLTQAELSEKTGISQSDISRLENGSRNPTIALLNRIANA 144

Query: 73  LD 74
           L+
Sbjct: 145 LN 146


>gi|257869745|ref|ZP_05649398.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|309778441|ref|ZP_07673356.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|257803909|gb|EEV32731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|308913804|gb|EFP59629.1| conserved domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 69

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N  + +RKE KL+Q E+    G +++ IS +ETG+        ++L   LD   
Sbjct: 3  EHLILKNRLKEVRKEKKLSQTELAEMVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
 gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 187

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RKEA LT +E+  ++G +Q ++S+ E G +  ++ N+  LA +L T    LL
Sbjct: 13 GAAVRTARKEAGLTLREVAVKSGLSQPFLSQTENGHAVPSVMNLHRLAQSLGTTAHSLL 71


>gi|56696467|ref|YP_166824.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56678204|gb|AAV94870.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 217

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 4  RKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          R         ++  ER            R  RK+  +T  E+   T  +   +S++E G 
Sbjct: 8  RMTQLLQDPHSVREEREKVLEVAIGREVRAFRKQQGITVAELSKLTDLSIGMLSKIENGN 67

Query: 59 STINIDNMIILAHTLDTPLWKLLK 82
          ++ ++  +  LA+ L  PL    K
Sbjct: 68 TSPSLTTLQTLANALSVPLTAFFK 91


>gi|56963509|ref|YP_175240.1| transcriptional repressor of PBSX genes [Bacillus clausii
          KSM-K16]
 gi|56909752|dbj|BAD64279.1| transcriptional repressor of PBSX genes [Bacillus clausii
          KSM-K16]
          Length = 101

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  +  R + +LT KE+      AQS IS  E G    ++DN+  LA   +     L
Sbjct: 1  MFASRLKECRIKKQLTMKELGQALNMAQSTISGYENGTRKPDLDNLARLADYFNVSTDYL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 197

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R         R+ RK   L+ + +  + G +   +S+LE G    ++ ++  LA  L  
Sbjct: 10 QRAVETLGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGALGI 69

Query: 76 PLWKLL 81
          P+ +LL
Sbjct: 70 PVAQLL 75


>gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 210

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +T  E+  RTG ++S +S LE G     ++ ++ LA     PL +L+
Sbjct: 26 VGPRLRELRRRHGMTLAELAERTGISESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 85


>gi|118479657|ref|YP_896808.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|118418882|gb|ABK87301.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 241

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  ++RK+   +Q+E     G ++  +S+ E+G S   ++ ++ +A+  +  L +L+K
Sbjct: 5  ENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASIPELERLVEIANIFEVSLDELVK 63


>gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 105

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++  L+  ++    G  QS +S +E G+ +  ID ++ + + L   L +  
Sbjct: 4  VGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGERSPTIDVIMKICNALGITLVEFF 63


>gi|257091659|ref|YP_003165302.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257048668|gb|ACV37855.1| hypothetical protein CAP2UW1_4733 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 123

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF  N   +  E  +T+ E+  +   + S++S+L  GK+  ++  M  +A  L+TPL  
Sbjct: 4  HIFFTNILRLLDERGMTKNELAAKADISISFLSDLTNGKANPSLKIMEAIAEALETPLPT 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLE 66


>gi|229117990|ref|ZP_04247350.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3]
 gi|228665439|gb|EEL20921.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3]
          Length = 190

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|332671330|ref|YP_004454338.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332340368|gb|AEE46951.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC
          484]
          Length = 488

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + ++     R++R    +T +++    G A S +S LE G     +  +  +A  L  P+
Sbjct: 16 DTLVLGRRIRHLRTGRGMTLEDLGRAIGRAPSQVSMLENGHREPRVGVLAAVADALGVPV 75

Query: 78 WKLLKP 83
           +LL+P
Sbjct: 76 AELLRP 81


>gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM
          16795]
 gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM
          16795]
          Length = 139

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RK   L+Q+E+  R    +  IS+ E G S  + D +I +A   +  + +L
Sbjct: 1  MLNENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSVPDADMLIKIADIFEVSVSEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|89069978|ref|ZP_01157310.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516]
 gi|89044426|gb|EAR50557.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516]
          Length = 201

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE   T ++   + G A+S +S++E G+ +   D +  LA  LD  + +L 
Sbjct: 20 LGARVRELRKERDWTLEQAARKAGLARSTLSKIENGQMSPTYDALKKLATGLDISIPQLF 79

Query: 82 KP 83
           P
Sbjct: 80 TP 81


>gi|269836105|ref|YP_003318333.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269785368|gb|ACZ37511.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 992

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R R       R  R+ A LTQ+++  RT ++  +IS+LE G+  ++   +  L   L 
Sbjct: 11 RGRPTRGELLRRYRRLAGLTQEQLAERTDYSVDYISKLERGQRRLSAATLDRLVQPLG 68


>gi|257453157|ref|ZP_05618456.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|317059692|ref|ZP_07924177.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|313685368|gb|EFS22203.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
          Length = 185

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  RNIR    L  KE+  +   + S +S++E G +  +++ +  +A  L+ PL+K  
Sbjct: 7  VGNIIRNIRLSKGLLIKEVAMKCDISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFKFF 66


>gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 124

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N    RK+   TQ E+  R G     +S  E G +  ++  +  LA  L  PL+K
Sbjct: 14 LILGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYK 73

Query: 80 LL 81
          L+
Sbjct: 74 LV 75


>gi|260433557|ref|ZP_05787528.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260417385|gb|EEX10644.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 207

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             E +      R +RK    T ++  N+ G A+S +S++E G+ +   D +  LA  L+
Sbjct: 20 TEPEPVDLGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLATGLE 79

Query: 75 TPLWKLLKP 83
            + +L  P
Sbjct: 80 ISVPQLFTP 88


>gi|229065829|ref|ZP_04201033.1| hypothetical protein bcere0026_58150 [Bacillus cereus AH603]
 gi|228715445|gb|EEL67269.1| hypothetical protein bcere0026_58150 [Bacillus cereus AH603]
          Length = 185

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 134

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 RN+RK  K++Q+++  +   ++  IS  E   S+ +I  ++ +       L  
Sbjct: 4  KSVGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVSSPDIHALLEMTELFGVSLNH 63

Query: 80 LLK 82
          L+K
Sbjct: 64 LVK 66


>gi|299768445|ref|YP_003730471.1| Helix-turn-helix family protein [Acinetobacter sp. DR1]
 gi|298698533|gb|ADI89098.1| Helix-turn-helix family protein [Acinetobacter sp. DR1]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|297158608|gb|ADI08320.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
          Length = 206

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             R            R+  +++ + +  R+  + S++S+LE G+S+ +I  +  +A  L
Sbjct: 18 PAERPESDVGRRVHAFRRLRRMSLRALAERSDVSGSFLSQLERGRSSASISTLARIASAL 77

Query: 74 DTPLWKLL 81
             + +L 
Sbjct: 78 GITMAELF 85


>gi|260220717|emb|CBA28555.1| hypothetical protein Csp_A07760 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 210

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  ++ RK  +L+  E+  R G ++S +SE+E  ++   +  +  LA  L   L  LL
Sbjct: 29 VGSKLQDARKAQQLSLDELSKRAGVSKSMLSEVERNQANPTVGVLWRLATALGISLTDLL 88


>gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 201

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  NN + +R++ KL+  ++   TG +++ + ++E G+S+ +I  +  +A+ L      
Sbjct: 22 LILANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLSFSS 81

Query: 80 LL 81
          L+
Sbjct: 82 LI 83


>gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
          Length = 128

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75
          F +  + +R     +Q+E+ + +G +++ IS  E  ++         + N+  LA  LD 
Sbjct: 17 FASRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDV 76

Query: 76 PLWKLL 81
          P   L+
Sbjct: 77 PPIALM 82


>gi|77919382|ref|YP_357197.1| helix-turn-helix transcriptional regulator [Pelobacter carbinolicus
           DSM 2380]
 gi|77545465|gb|ABA89027.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM
           2380]
          Length = 124

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R    LTQ+E+ +R G ++ ++S++E+GK    ++ +  +A  LD PL
Sbjct: 72  RDYRSLTQQELADRAGISKPYLSQIESGKRQGTVETLAAIARALDVPL 119


>gi|328948101|ref|YP_004365438.1| hypothetical protein Tresu_1233 [Treponema succinifaciens DSM
          2489]
 gi|328448425|gb|AEB14141.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 114

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N R  R + K+TQ+E+  + G     IS++ETGK+    + +      L+   ++
Sbjct: 9  KILGANIRCYRIKLKMTQEELAEKAGITSVGISKIETGKTWPKKETIEKFLEILEVKPFQ 68

Query: 80 LLK 82
          L  
Sbjct: 69 LFT 71


>gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 365

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 18 ERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +R IF           +RK  K+TQ ++  + G +   +S+ E+G S  +I  ++ L+  
Sbjct: 23 DRKIFIPGAMGERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLSCPDIMTLVPLSQV 82

Query: 73 LDTPLWKLL 81
          L     +LL
Sbjct: 83 LGVSTDELL 91


>gi|228985529|ref|ZP_04145685.1| hypothetical protein bthur0001_22230 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228774206|gb|EEM22616.1| hypothetical protein bthur0001_22230 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|324326453|gb|ADY21713.1| transcriptional regulator [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 185

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|33599736|ref|NP_887296.1| putative transcriptional regulator [Bordetella bronchiseptica
          RB50]
 gi|33567333|emb|CAE31246.1| putative transcriptional regulator [Bordetella bronchiseptica
          RB50]
          Length = 201

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +     R IRKE K++ + +  R+G A   +S++E      ++  +  +   LD PL
Sbjct: 5  DTRLVGQAIRRIRKEKKISLQTLAARSGVATGMLSQIERDLGNPSLKTLARIRQALDVPL 64

Query: 78 WKLL 81
            L 
Sbjct: 65 SALF 68


>gi|28901246|ref|NP_800901.1| hypothetical protein VPA1391 [Vibrio parahaemolyticus RIMD
          2210633]
 gi|153835937|ref|ZP_01988604.1| conserved domain protein [Vibrio parahaemolyticus AQ3810]
 gi|260362803|ref|ZP_05775672.1| conserved domain protein [Vibrio parahaemolyticus K5030]
 gi|260880091|ref|ZP_05892446.1| conserved domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260895208|ref|ZP_05903704.1| conserved domain protein [Vibrio parahaemolyticus Peru-466]
 gi|28809759|dbj|BAC62734.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750691|gb|EDM61436.1| conserved domain protein [Vibrio parahaemolyticus AQ3810]
 gi|308085564|gb|EFO35259.1| conserved domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308091862|gb|EFO41557.1| conserved domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308112048|gb|EFO49588.1| conserved domain protein [Vibrio parahaemolyticus K5030]
          Length = 68

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R++RK+  ++Q ++       +S++  +E G+  I ++    +A  L   + +LL
Sbjct: 8  FGYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDIRELL 67


>gi|291526890|emb|CBK92476.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 97

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 31/56 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  +  + +R    LTQ+++ ++ G ++   + +E+G ++I +D +  +A  LD 
Sbjct: 3  ELLGSRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDV 58


>gi|229048166|ref|ZP_04193735.1| hypothetical protein bcere0027_41350 [Bacillus cereus AH676]
 gi|228723153|gb|EEL74529.1| hypothetical protein bcere0027_41350 [Bacillus cereus AH676]
          Length = 74

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK   L+Q+++       +++I  LE  +   ++  +  +A+ L+     L+
Sbjct: 7  FGTVLKKHRKLNGLSQEQLAFLCDLDRTYIGLLERSQRQPSLKTIFRIANELNISASDLI 66

Query: 82 K 82
          +
Sbjct: 67 R 67


>gi|226360646|ref|YP_002778424.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239131|dbj|BAH49479.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 115

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P  S      R ++    R  R++   + +++    G ++ ++SE+E GK   + + +
Sbjct: 12 AAPDGSGEEPLVRELYGRVLREARRDQDRSLEDVAAAVGMSKQYLSEIERGKKEPSSEML 71

Query: 67 IILAHTLDTPLWKLL 81
            +   L   +  LL
Sbjct: 72 RAVCGALGMSVEHLL 86


>gi|152982459|ref|YP_001354080.1| Cro/CI family transcriptional regulator [Janthinobacterium sp.
          Marseille]
 gi|151282536|gb|ABR90946.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp.
          Marseille]
          Length = 221

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P LSD  LR           +R     TQ  + + TGF + ++S++E  K    I  +I 
Sbjct: 11 PELSDIELR----LGRRVSELRTARGYTQDRLASETGFTKGYLSKIENSKIIPPIGTLIK 66

Query: 69 LAHTLDTPLWKLL 81
          +A  L T L +LL
Sbjct: 67 IAQALHTDLAELL 79


>gi|194467588|ref|ZP_03073575.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454624|gb|EDX43521.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 122

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
            N R  RK   LTQ+++   +  +  +IS +E+ KS  I+I  +  +A  LD  L  L+
Sbjct: 8  GENIRRYRKLRGLTQEKLAEFSDLSVKFISMVESKKSQNISIQRLEKIADALDISLATLV 67


>gi|260903897|ref|ZP_05912219.1| helix-turn-helix domain-containing protein [Brevibacterium linens
          BL2]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R  RK   LT  E+  R G +++ +S++E G+   ++ N + L+  L   + +L
Sbjct: 11 VFGARIRARRKYNDLTLNELAVRAGISRAALSKIERGEQDTSVSNAMGLSRALGVDVGEL 70

Query: 81 LKP 83
          L P
Sbjct: 71 LAP 73


>gi|163942236|ref|YP_001647120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229013704|ref|ZP_04170833.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048]
 gi|229135335|ref|ZP_04264127.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196]
 gi|163864433|gb|ABY45492.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228648124|gb|EEL04167.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196]
 gi|228747626|gb|EEL97500.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048]
          Length = 190

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|319946286|ref|ZP_08020526.1| XRE family transcriptional regulator [Streptococcus australis ATCC
           700641]
 gi|319747668|gb|EFV99921.1| XRE family transcriptional regulator [Streptococcus australis ATCC
           700641]
          Length = 157

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 36/69 (52%)

Query: 15  ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  +++   +  ++ R + KLTQ+E+  R+  +  +++ +E  K  ++++ ++ +   L+
Sbjct: 50  VSVKKLSIGSQIKSYRIKLKLTQQELAERSELSLPFMNLVENDKRNLSVETLLKILDGLE 109

Query: 75  TPLWKLLKP 83
               +   P
Sbjct: 110 ISPSEFFLP 118


>gi|87121237|ref|ZP_01077127.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121]
 gi|86163394|gb|EAQ64669.1| hypothetical protein MED121_23009 [Marinomonas sp. MED121]
          Length = 186

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     +  R++  ++  EI  + G A+S +S+LE+G    +++ +  L+  L  P  K
Sbjct: 10 EIVAKALKRERRKLGVSMAEIARQAGIAKSTLSQLESGIGNPSLETLWALSIALQVPFSK 69

Query: 80 LLK 82
          L++
Sbjct: 70 LIE 72


>gi|302533187|ref|ZP_07285529.1| transcriptional regulatory protein [Streptomyces sp. C]
 gi|302442082|gb|EFL13898.1| transcriptional regulatory protein [Streptomyces sp. C]
          Length = 198

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +  R E   T   +  R G ++  I ++E  ++  ++   + LA  L   +  LL
Sbjct: 12 LARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 71


>gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC
          BAA-613]
          Length = 230

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +     N   +RKE  ++Q+++  +    +  +S  ETG+S  ++D +  LA    T
Sbjct: 9  KNTVGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQPDLDMLETLASAFGT 65


>gi|153815596|ref|ZP_01968264.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC
          27756]
 gi|317501623|ref|ZP_07959815.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331088574|ref|ZP_08337485.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145847027|gb|EDK23945.1| hypothetical protein RUMTOR_01832 [Ruminococcus torques ATCC
          27756]
 gi|295100105|emb|CBK89194.1| Predicted transcriptional regulator [Eubacterium cylindroides
          T2-87]
 gi|316896966|gb|EFV19045.1| hypothetical protein HMPREF1026_01759 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330407531|gb|EGG87031.1| hypothetical protein HMPREF1025_01068 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 223

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 18 ERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+ I     N + IRK   + Q+E+ N+ G     +S++E G +    D +  +   L  
Sbjct: 5  EKKISFLGENIQIIRKHRGMKQQELANKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGV 64

Query: 76 PLWKLL 81
             +LL
Sbjct: 65 TPNELL 70


>gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
          PCA]
 gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter
          sulfurreducens PCA]
 gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin
          domain-containing [Geobacter sulfurreducens KN400]
          Length = 181

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ NR    + +IS+LE   ++ +I  +  +       + +  
Sbjct: 4  GERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQEFF 62


>gi|312976864|ref|ZP_07788613.1| putative transcriptional repressor [Lactobacillus crispatus
          CTV-05]
 gi|310896192|gb|EFQ45257.1| putative transcriptional repressor [Lactobacillus crispatus
          CTV-05]
          Length = 63

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +  R    LTQ+++  +   ++  IS +E G    +++  I +   LD  L  L  P
Sbjct: 1  MKAARVGKDLTQEDLAQQIDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWP 58


>gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202]
 gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202]
          Length = 110

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
            +N + IRK A ++Q+E+ + +G +++ IS LE G+ +   I+ ++ +A  L   + ++
Sbjct: 4  LGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQNNPQINTIVSIASNLGVSIEEI 63

Query: 81 L 81
          +
Sbjct: 64 I 64


>gi|134046605|ref|YP_001098090.1| transcriptional regulator [Methanococcus maripaludis C5]
 gi|132664230|gb|ABO35876.1| transcriptional regulator [Methanococcus maripaludis C5]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IRK   L+   + N TG ++S + ++E G+    I  ++ +++ L      
Sbjct: 6  EVISKNLKIIRKRKDLSLDALSNLTGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTS 65

Query: 80 LLK 82
          LLK
Sbjct: 66 LLK 68


>gi|111018527|ref|YP_701499.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110818057|gb|ABG93341.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 115

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P  S      R ++    R  R++   + +++    G ++ ++SE+E GK   + + +
Sbjct: 12 AAPEQSREEPLVRELYGRVLREARRDQDRSLEDVAAAVGMSKQYLSEIERGKKEPSSEML 71

Query: 67 IILAHTLDTPLWKLL 81
            +   L  P+  LL
Sbjct: 72 RAVCGALGLPVEHLL 86


>gi|301053958|ref|YP_003792169.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376127|gb|ADK05031.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
          CI]
          Length = 185

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
 gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
          Length = 209

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R +D    +  +  +        + +RK   L+  E+  ++G A+S IS++E  ++   
Sbjct: 11 GRPKDLVSGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  L+  LD  + ++L
Sbjct: 68 LTTIWRLSQALDVSIERVL 86


>gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0411]
 gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0635]
 gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0411]
 gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0635]
 gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX4000]
          Length = 107

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+ KLTQ ++ N  G A++  S  E G+ T +ID    +A   +  L  L
Sbjct: 1  MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL 60


>gi|225866477|ref|YP_002751855.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|225788695|gb|ACO28912.1| DNA-binding protein [Bacillus cereus 03BB102]
          Length = 190

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|224539861|ref|ZP_03680400.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518510|gb|EEF87615.1| hypothetical protein BACCELL_04771 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 103

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           I     +  R +A LTQ+++  R G  +++IS +E GK+ + +  +  +   L   
Sbjct: 43 FILAERLKEERLKAGLTQEQLAERIGTKKTYISRIENGKADVQLSTLFRIFQGLGKQ 99


>gi|82592707|gb|ABB84523.1| DigR [Myxococcus xanthus]
          Length = 197

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +K+      +A L  R I     R+ RK  +LT K++  RTG + S +S++E  +S+ +I
Sbjct: 119 QKKGLSQDPEADL-HRAI-GRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASI 176

Query: 64  DNMIILAHTLDTPLWKLL 81
            ++  +A  L   + +L 
Sbjct: 177 SSLYKIASALQLRMGELF 194


>gi|150018990|ref|YP_001311244.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905455|gb|ABR36288.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 183

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E +L+  ++ +  G ++  + ++E G+S   I+ +  +A  L  P   L
Sbjct: 6  IIAGNLKRLRNERQLSLGKLSDICGVSKVMLGQIERGESNPTINTIWKIAGGLRVPYTSL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 209

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
                     ER+      R +RK   LT  ++      +  ++S+LE G +  ++ ++
Sbjct: 7  ATSVDDSPTGDERL--GARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLARPSMASL 64

Query: 67 IILAHTLDTPLWKLL 81
            LA  L T   +L+
Sbjct: 65 ERLARALGTSRVELI 79


>gi|293610621|ref|ZP_06692921.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826965|gb|EFF85330.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123811|gb|ADY83334.1| DNA-binding protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|283834661|ref|ZP_06354402.1| hypothetical protein CIT292_08868 [Citrobacter youngae ATCC
          29220]
 gi|291069576|gb|EFE07685.1| toxin-antitoxin system, antitoxin component, Xre family
          [Citrobacter youngae ATCC 29220]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  MIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
 gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 246

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++  +T  ++   TG ++S +S LE G+    ++ ++ LA T + PL  L+
Sbjct: 13 VGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQRRPTLELLLPLARTYNVPLDDLV 72


>gi|54024079|ref|YP_118321.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54015587|dbj|BAD56957.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 204

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+ A L+  E+  + G +++ +S++E  +++ ++  +  LA  LD P+  L +
Sbjct: 20 ARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSLSTVARLAAGLDVPVTSLFR 79


>gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 209

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R +D    +  +  +        + +RK   L+  E+  ++G A+S IS++E  ++   
Sbjct: 11 GRPKDLASGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  L+  LD  + ++L
Sbjct: 68 LATIWRLSQALDVSIERVL 86


>gi|146342719|ref|YP_001207767.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146195525|emb|CAL79550.1| putative transcriptional regulator with a putative HTH DNA-binding
           domain [Bradyrhizobium sp. ORS278]
          Length = 225

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 5   KRDEPHL-------SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
            R EP L        +A            R +RK+  LT  E+    G +   +S++E G
Sbjct: 18  PRQEPELLTGSMAPKEATPTLETEIGAEVRRLRKDLDLTVAELGAAAGISAGMMSKIENG 77

Query: 58  KSTINIDNMIILAHTLDTPLWKLLK 82
             + ++  +  LA  L+ P+ +L +
Sbjct: 78  SISPSLATLSALAKALNVPIARLFR 102


>gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC
          27756]
 gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC
          27756]
          Length = 126

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R E  LTQK++    G A S I + E+G     I+ +  +A  LD P+ +LL
Sbjct: 6  GDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64


>gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 107

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+ KLTQ ++ N  G A++  S  E G+ T +ID    +A   +  L  L
Sbjct: 1  MFGTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYL 60


>gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 211

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IRK  K+ Q+E+ +  G     +S++E G +    D +  +   L+    +LL
Sbjct: 11 LGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLEKIMDVLEVTPNELL 70


>gi|311281644|ref|YP_003943875.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308750839|gb|ADO50591.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  EI  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERMRTGLSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|295100881|emb|CBK98426.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii
           L2-6]
          Length = 168

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + +RK  K+TQ+++  ++  +  +I+ +E GK   + D +  + H L   L  ++
Sbjct: 59  LGKQIKAVRKAMKMTQEQLALKSNVSVKYIANIENGKQNPSFDILSSILHVLPLSLDSVI 118

Query: 82  KP 83
            P
Sbjct: 119 NP 120


>gi|255652577|ref|ZP_05399479.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-37x79]
          Length = 278

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N +  RK+ ++TQ+++  + G ++  +   E  +   N+D +  LA  LDT 
Sbjct: 4  GENIKTFRKDRRMTQEQLAEKAGISRVALGNYEREERVPNLDILEKLATALDTS 57


>gi|108757722|ref|YP_635287.1| DNA-binding protein [Myxococcus xanthus DK 1622]
 gi|108461602|gb|ABF86787.1| DNA-binding protein [Myxococcus xanthus DK 1622]
          Length = 117

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F ++ R +R   +LTQ+ +  R+  +   I  +E G  + ++D +  L+  LD  L  L 
Sbjct: 18 FGDHVRKLRTARELTQEALAERSDLSVDAIRRIERGSFSPSLDTLGKLSKGLDVSLKTLF 77

Query: 82 K 82
          +
Sbjct: 78 Q 78


>gi|260905346|ref|ZP_05913668.1| transcriptional regulator, XRE family protein [Brevibacterium
          linens BL2]
          Length = 112

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D        L  R +     R  R E  LT  ++  R+G +  ++SE+E G    + + +
Sbjct: 8  DAYADRTPALLWREMLGRVLRLRRTELGLTLAQVSRRSGVSTQYLSEVERGLKDPSSEVI 67

Query: 67 IILAHTLDTPLWKLL 81
            +A  L   L ++L
Sbjct: 68 EAIAIVLGLALPQVL 82


>gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51]
 gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 134

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +RKE  L+Q+++      ++  +S+ E+ ++   +D +I+L+   +  L  
Sbjct: 4  MSFSEKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQAYPELDKLILLSDFFNISLDD 63

Query: 80 LLK 82
          L+K
Sbjct: 64 LIK 66


>gi|103487689|ref|YP_617250.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
          RB2256]
 gi|98977766|gb|ABF53917.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
          RB2256]
          Length = 73

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F N+ R +R  A  +TQ E+  R G  +  I+ +E GK + +++    +AH    PL  +
Sbjct: 6  FANDIRTLRFLAGEMTQAELGERVGVTRQTIAAIEQGKYSPSLEVAFRIAHVFGKPLEAV 65

Query: 81 LK 82
           +
Sbjct: 66 FQ 67


>gi|228935813|ref|ZP_04098625.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228823870|gb|EEM69690.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 190

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|196034409|ref|ZP_03101818.1| DNA-binding protein [Bacillus cereus W]
 gi|195992951|gb|EDX56910.1| DNA-binding protein [Bacillus cereus W]
          Length = 190

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum
          H04402 065]
          Length = 189

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L    +
Sbjct: 6  GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65


>gi|73661492|ref|YP_300273.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72494007|dbj|BAE17328.1| putative transcriptional regulator [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 181

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N  + RK+ +L+  ++ N TG +++ +S++E G+S   I  +  +A+ L   L +L
Sbjct: 7  IVAKNIADYRKKHQLSLDKVANATGVSKNMLSQIEKGQSNPTITTLWKIANGLHISLSQL 66


>gi|10954763|ref|NP_066698.1| hypothetical protein pRi1724_p118 [Agrobacterium rhizogenes]
 gi|10567427|dbj|BAB16236.1| hypothetical protein [Agrobacterium rhizogenes]
          Length = 62

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R IR   +LTQ+E+ +RTG +   +  +E  + +  +  +  +A  L     +L+ 
Sbjct: 4  NMRRIRHGKQLTQEEVAHRTGLSVRHVGAIERAEMSATVTVLGQIAEALGVEPAELVT 61


>gi|119383208|ref|YP_914264.1| helix-turn-helix domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119372975|gb|ABL68568.1| helix-turn-helix domain protein [Paracoccus denitrificans PD1222]
          Length = 84

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R  R  A L+Q+E+ +R G +  ++S LE+ +   ++  +  L   L   + +
Sbjct: 10 EAFAKILRKQRTAAGLSQEELAHRAGVSMRYVSLLESRRHQPSLATIHGLCQGLGLSMVE 69

Query: 80 LL 81
          L+
Sbjct: 70 LI 71


>gi|30264572|ref|NP_846949.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47530039|ref|YP_021388.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187395|ref|YP_030647.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|65321870|ref|ZP_00394829.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165871491|ref|ZP_02216138.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167635596|ref|ZP_02393908.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641686|ref|ZP_02399931.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170688288|ref|ZP_02879498.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170708374|ref|ZP_02898818.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177653168|ref|ZP_02935455.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190567021|ref|ZP_03019937.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196039163|ref|ZP_03106469.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218905729|ref|YP_002453563.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227817285|ref|YP_002817294.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228929551|ref|ZP_04092570.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228948227|ref|ZP_04110511.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229124068|ref|ZP_04253260.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201]
 gi|229600477|ref|YP_002868785.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254687007|ref|ZP_05150865.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724570|ref|ZP_05186353.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254736607|ref|ZP_05194313.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254741645|ref|ZP_05199332.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254754757|ref|ZP_05206792.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254757589|ref|ZP_05209616.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|301056014|ref|YP_003794225.1| DNA-binding protein [Bacillus anthracis CI]
 gi|30259230|gb|AAP28435.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47505187|gb|AAT33863.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181322|gb|AAT56698.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164712788|gb|EDR18318.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510393|gb|EDR85794.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529016|gb|EDR91771.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170126749|gb|EDS95632.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170667794|gb|EDT18547.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172081692|gb|EDT66763.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190562012|gb|EDV15981.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196029790|gb|EDX68391.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218537131|gb|ACK89529.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227005980|gb|ACP15723.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228659370|gb|EEL15018.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201]
 gi|228811585|gb|EEM57922.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228830130|gb|EEM75748.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229264885|gb|ACQ46522.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|300378183|gb|ADK07087.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 190

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter
          subterraneus DSM 13965]
 gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter
          subterraneus DSM 13965]
          Length = 216

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
               R++R++  ++ +++  R+G +++++S+LE       ++D ++ +A  L+  L +L
Sbjct: 3  VGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVVLRIAAALEVDLAEL 62

Query: 81 LKP 83
          + P
Sbjct: 63 VGP 65


>gi|148544879|ref|YP_001272249.1| ABC transporter related [Lactobacillus reuteri DSM 20016]
 gi|184154216|ref|YP_001842557.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM
          1112]
 gi|227364019|ref|ZP_03848119.1| ABC superfamily ATP binding cassette transporter ATPase
          [Lactobacillus reuteri MM2-3]
 gi|325683224|ref|ZP_08162740.1| ABC superfamily ATP binding cassette transporter ABC protein
          [Lactobacillus reuteri MM4-1A]
 gi|148531913|gb|ABQ83912.1| ABC transporter related [Lactobacillus reuteri DSM 20016]
 gi|183225560|dbj|BAG26077.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM
          1112]
 gi|227070941|gb|EEI09264.1| ABC superfamily ATP binding cassette transporter ATPase
          [Lactobacillus reuteri MM2-3]
 gi|324977574|gb|EGC14525.1| ABC superfamily ATP binding cassette transporter ABC protein
          [Lactobacillus reuteri MM4-1A]
          Length = 293

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +    +R E +L+Q E+  R   ++  +S+ E G +  +ID +I+LA   +  L +L+
Sbjct: 5  FPHQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLI 64


>gi|157961107|ref|YP_001501141.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
          700345]
 gi|157846107|gb|ABV86606.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
          700345]
          Length = 118

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       IRKE  + Q E+   TG +Q  +S LE GK+ I ID + ++   L      +
Sbjct: 10 LVGFELEKIRKELGMEQSEVSVATGISQPVLSRLEKGKAMITIDQLFVICGALGVKPEDI 69

Query: 81 L 81
          +
Sbjct: 70 I 70


>gi|126699269|ref|YP_001088166.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254975298|ref|ZP_05271770.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092688|ref|ZP_05322166.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100793|ref|ZP_05329770.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306676|ref|ZP_05350847.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255314426|ref|ZP_05356009.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517102|ref|ZP_05384778.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650208|ref|ZP_05397110.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683328|ref|YP_003214613.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686924|ref|YP_003218057.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306520193|ref|ZP_07406540.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|115250706|emb|CAJ68530.1| Transcriptional regulator, RmlC-type [Clostridium difficile]
 gi|260209491|emb|CBA63038.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212940|emb|CBE04210.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 183

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +R E  L+  ++   +G ++  +S++E G S   ++ +  +A  L+ P   +
Sbjct: 6  VIAKNLNRLRNERNLSLGQLAELSGVSKVMLSQIEKGDSNPTVNTIWKIASGLNVPYTAI 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065]
          Length = 92

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  + +R+E + TQ+E+      ++  IS  E+G    +I N++ +A+  +  L  L
Sbjct: 1  MFGDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIEPSISNLVKIANIFNVSLDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|291526368|emb|CBK91955.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291526813|emb|CBK92399.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 187

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IR+   ++  ++  +TG ++S ++++E G +  +I  +  +   L     +L+
Sbjct: 8  VSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLI 67

Query: 82 KP 83
           P
Sbjct: 68 DP 69


>gi|283787426|ref|YP_003367291.1| DNA binding protein [Citrobacter rodentium ICC168]
 gi|282950880|emb|CBG90557.1| putative DNA binding protein [Citrobacter rodentium ICC168]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  MIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|257463085|ref|ZP_05627486.1| MerR family transcriptional regulator [Fusobacterium sp. D12]
 gi|317060684|ref|ZP_07925169.1| transcriptional regulator [Fusobacterium sp. D12]
 gi|313686360|gb|EFS23195.1| transcriptional regulator [Fusobacterium sp. D12]
          Length = 182

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R E  L+ +E+  +   + S++S++E GK++ +I+N+  +A  LD  +  
Sbjct: 1  MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|238922527|ref|YP_002936040.1| hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656]
 gi|238874199|gb|ACR73906.1| Hypothetical protein EUBREC_0101 [Eubacterium rectale ATCC 33656]
          Length = 189

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IR+   ++  ++  +TG ++S ++++E G +  +I  +  +   L     +L+
Sbjct: 10 VSENLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSIGVLGKITSGLRIEFQRLI 69

Query: 82 KP 83
           P
Sbjct: 70 DP 71


>gi|229098961|ref|ZP_04229896.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29]
 gi|229105128|ref|ZP_04235779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28]
 gi|228678309|gb|EEL32535.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28]
 gi|228684459|gb|EEL38402.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29]
          Length = 190

 Score = 55.4 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|332981126|ref|YP_004462567.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698804|gb|AEE95745.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 121

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 ++IRK+  LT + +      + S+I+++E+G+S  ++D +  LA  L+  +  
Sbjct: 2  ESIGAKLKSIRKQRGLTLRALGKAANVSHSFIADIESGRSNPSLDTLDALAKALNVSITD 61

Query: 80 LLK 82
          +++
Sbjct: 62 IIR 64


>gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM
           2032]
 gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus
           DSM 2032]
          Length = 436

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           L  R       + +RK+  L+QKE+  + G   S IS++E      ++  +  LA +L  
Sbjct: 250 LPGRFDLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLSI 309


>gi|303326710|ref|ZP_07357152.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862698|gb|EFL85630.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 89

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R  A L+Q+++ +R G  +S++S LE G    N++ +I +A +L+    +LL
Sbjct: 24 LRRYRDAAGLSQRQLADRVGITKSYVSSLELGYRAPNLNLLIKIARSLEVRPGELL 79


>gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
          Length = 146

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+    +Q+++  + G  +  I + E  KS  +IDN+I+L+   +  L +L+
Sbjct: 3  LGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKSYPDIDNLILLSEMYNVTLDELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229019722|ref|ZP_04176528.1| Transcriptional regulator, Xre [Bacillus cereus AH1273]
 gi|229025948|ref|ZP_04182338.1| Transcriptional regulator, Xre [Bacillus cereus AH1272]
 gi|228735349|gb|EEL85954.1| Transcriptional regulator, Xre [Bacillus cereus AH1272]
 gi|228741567|gb|EEL91761.1| Transcriptional regulator, Xre [Bacillus cereus AH1273]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|239814988|ref|YP_002943898.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801565|gb|ACS18632.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 101

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 37/74 (50%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             S  + R +  F  + R +R +  +T +++    G   +++  +E G+  +++ N+  
Sbjct: 14 SVSSKELERLQQAFGEHLRALRHDRLITIEQLAELAGLHPNYVGSVERGERNLSLFNIWR 73

Query: 69 LAHTLDTPLWKLLK 82
          LA  L+  + +L++
Sbjct: 74 LAGGLEVSVSQLVE 87


>gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis]
          Length = 107

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 100

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + IR    L   ++  + G    ++S LE G    +I+ +  +   L   L +  
Sbjct: 4  GHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKIPSIETLQKICDALGITLSEFF 62


>gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 251

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R IR    L+Q+         +  +   E G+S   ID +I +A+    P+  LL
Sbjct: 4  FGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTIIKIANYFSIPIDDLL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 193

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R +R +  +TQKE+  +   +   IS+ ET K   +I  +  LA  L   L +L  
Sbjct: 6  GNTIRTLRIKHGITQKELAEKLNVSDKTISKWETEKGLPDISIVEELAKALHVSLTELFT 65


>gi|312870378|ref|ZP_07730503.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
 gi|311094079|gb|EFQ52398.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
          Length = 126

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R+ A L+Q+++ ++   ++  IS+ E G +  +I+ +I +A  L   L +L+
Sbjct: 4  FQQQLTKLRQAAGLSQEQLADQLHVSRQAISKWENGSALPDIEKIIQIASILHVSLDELV 63


>gi|228941681|ref|ZP_04104228.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228974608|ref|ZP_04135174.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228981203|ref|ZP_04141503.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407]
 gi|228778403|gb|EEM26670.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407]
 gi|228785011|gb|EEM33024.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228817893|gb|EEM63971.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 194

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77

Query: 80 LL 81
          L+
Sbjct: 78 LM 79


>gi|118586301|ref|ZP_01543755.1| transcriptional regulator, helix-turn-helix XRE-family
          [Oenococcus oeni ATCC BAA-1163]
 gi|118433264|gb|EAV39976.1| transcriptional regulator, helix-turn-helix XRE-family
          [Oenococcus oeni ATCC BAA-1163]
          Length = 122

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R +  L+QK++  +   ++  IS+ E+G++T +++N+I L+  LD  L  L+
Sbjct: 4  FPEQLKKYRNKKNLSQKDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLV 63


>gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp]
 gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp]
          Length = 240

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78
                 + +RK   ++Q+ +    G+ +QS I   E      ++ +++++A  L   L 
Sbjct: 2  ETLGQRLKRLRKAKGMSQQALAEECGWASQSRIGNYEADLRAPSLSDLLLIAPALGVSLA 61

Query: 79 KL 80
          +L
Sbjct: 62 EL 63


>gi|108761825|ref|YP_633731.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465705|gb|ABF90890.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 222

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +K+      +A L  R I     R+ RK  +LT K++  RTG + S +S++E  +S+ +I
Sbjct: 144 QKKGLSQDPEADL-HRAI-GRTIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASI 201

Query: 64  DNMIILAHTLDTPLWKLL 81
            ++  +A  L   + +L 
Sbjct: 202 SSLYKIASALQLRMGELF 219


>gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 476

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ ++     R +R+E  LTQ E+  R   + S+++++E  + T+    ++ LA  L   
Sbjct: 4  DKKLYAHAKLRRLRREHGLTQAELARRLDISTSYLNQIENSQRTLTAPILLRLAKVLGVD 63

Query: 77 LWK 79
             
Sbjct: 64 PEH 66


>gi|300312210|ref|YP_003776302.1| XRE family transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gi|300074995|gb|ADJ64394.1| XRE family transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 96

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R +  L+Q  +  +   + S++S LE  K    +  +  +A  L  P+  L 
Sbjct: 3  LGSAIQLCRVKQGLSQSALAEKANCSVSYLSMLENSKRDPTLSTIKSIAGALGVPIEILF 62


>gi|298368962|ref|ZP_06980280.1| DNA-binding protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282965|gb|EFI24452.1| DNA-binding protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 95

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 11 LSDAILRE---RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          L D +  E   R +   N R  R     +Q+E+  + G  +++IS +E  +  + + N+ 
Sbjct: 7  LPDTLPDEHDLRAVLAYNMRVFRVGKGWSQEELARQCGLDRTYISAVERKRWNVALSNIE 66

Query: 68 ILAHTLDT 75
           +A  L  
Sbjct: 67 KIAIALQI 74


>gi|296110945|ref|YP_003621326.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU
          11154]
 gi|295832476|gb|ADG40357.1| SOS-response transcriptional repressor [Leuconostoc kimchii IMSNU
          11154]
          Length = 91

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D   LS            N +  R  + ++Q  + +    +Q  +S  ETGK   +IDN+
Sbjct: 10 DNKILSQISGGASKDIQYNLKKYRTLSGISQDRLADLLCVSQVAVSNYETGKRIPDIDNL 69

Query: 67 IILAHTLDTPLWKLLKP 83
          I L++ L T + +L+ P
Sbjct: 70 IKLSNILQTSVPELIAP 86


>gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217]
 gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217]
          Length = 207

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E +      R +RK    T ++   + G A+S +S++E G+ +   D +  LA  L+  
Sbjct: 22 PEPLDLGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAQGLEIS 81

Query: 77 LWKLLKP 83
          + +L  P
Sbjct: 82 VPQLFTP 88


>gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
          Length = 194

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + IRK   ++   +    G +Q  IS+ E GK  I+ + +  +A  L+ P+  LL
Sbjct: 6  GKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPMDTLL 64


>gi|319440538|ref|ZP_07989694.1| putative DNA-binding protein [Corynebacterium variabile DSM
          44702]
          Length = 221

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 39/82 (47%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P  + D+P          +   +  R +R    ++   +  R G +++ +S++E  +++
Sbjct: 7  IPDHELDDPQSPVEDHSIEVGLGHRVRALRTSRGMSVAALSERAGLSKAMLSKIENAQTS 66

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
           ++ ++  LA  LD P+  L +
Sbjct: 67 CSLTSVAHLAAALDVPVATLFQ 88


>gi|312138107|ref|YP_004005443.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887446|emb|CBH46758.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 182

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+ R+ A LT + +   TG  +S++S++E G +T +I   + +A  LD  + +L 
Sbjct: 5  LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGINTPSIAVALKIARALDADVSQLF 60


>gi|291561683|emb|CBL40482.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SS3/4]
          Length = 68

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +I  NN + +R E KL+Q  +    G +++ IS +ETG+        +IL   LD   
Sbjct: 3  DELILKNNLKQVRTEKKLSQSALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium
          extorquens PA1]
 gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1]
          Length = 209

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R +D    +  +  +        + +RK   L+  E+  ++G A+S IS++E  ++   
Sbjct: 11 GRPKDLVSGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  L+  LD  + ++L
Sbjct: 68 LATIWRLSQALDVSIERVL 86


>gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 107

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +F    + IRK+ KLTQ+E+  ++G   + IS +E G    +++N   L   L+   
Sbjct: 6  DSELFCARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNVSA 65

Query: 78 WKLL 81
            LL
Sbjct: 66 DYLL 69


>gi|256844059|ref|ZP_05549546.1| conserved hypothetical protein [Lactobacillus crispatus
          125-2-CHN]
 gi|256613964|gb|EEU19166.1| conserved hypothetical protein [Lactobacillus crispatus
          125-2-CHN]
          Length = 68

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            +  R    LTQ+++  +   ++  IS +E G    +++  I +   LD  L  L  P
Sbjct: 5  RMKAARAGKDLTQEDLAQKVDVSRQTISAIEKGNYNPSVNLCIRICQALDKTLDDLFWP 63


>gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM
          12042]
 gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM
          12042]
          Length = 270

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RKE   +Q+++      ++  +S+ E+G+    ++ +I L+  L   L +L+
Sbjct: 3  FAQKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELLGISLDELM 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|116334877|ref|YP_796403.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC
          367]
 gi|116100224|gb|ABJ65372.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC
          367]
          Length = 254

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  + + +R+++ LTQ+ +  +    +  +S  ETGK+  N++ +  L+   +  L K
Sbjct: 1  MSFKEDIKTLRRQSNLTQEALAQQLHVTRQTVSTWETGKNMPNLETLHALSQLFNISLEK 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|296139160|ref|YP_003646403.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296027294|gb|ADG78064.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 83

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+E  L+Q+    + G   +++ ++E G+ +  ++N++ LAH L+T    LL
Sbjct: 16 FGRRVRARREELGLSQEAAAIQIGVHWTYLGQVERGQRSARVENILKLAHGLNTTPGALL 75


>gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC
          15579]
 gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC
          15579]
          Length = 189

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R   KLT KE+  RT  +  ++S+LE G +T+ ID++  +A  LD  L    +
Sbjct: 6  GKKIKKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNLTYFFQ 65


>gi|194467173|ref|ZP_03073160.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454209|gb|EDX43106.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 293

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +    +R E +L+Q E+  R   ++  +S+ E G +  +ID +I+LA   +  L +L+
Sbjct: 5  FPHQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLI 64


>gi|49478671|ref|YP_038556.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52140999|ref|YP_085831.1| DNA-binding protein [Bacillus cereus E33L]
 gi|229093600|ref|ZP_04224701.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42]
 gi|49330227|gb|AAT60873.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51974468|gb|AAU16018.1| DNA-binding protein [Bacillus cereus E33L]
 gi|228689809|gb|EEL43615.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|42783677|ref|NP_980924.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206975999|ref|ZP_03236909.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217961988|ref|YP_002340558.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228987754|ref|ZP_04147865.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229141235|ref|ZP_04269774.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26]
 gi|229158112|ref|ZP_04286181.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342]
 gi|229198653|ref|ZP_04325354.1| Transcriptional regulator, Xre [Bacillus cereus m1293]
 gi|42739606|gb|AAS43532.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|206745751|gb|EDZ57148.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217066549|gb|ACJ80799.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228584812|gb|EEK42929.1| Transcriptional regulator, Xre [Bacillus cereus m1293]
 gi|228625341|gb|EEK82099.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342]
 gi|228642276|gb|EEK98568.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST26]
 gi|228772028|gb|EEM20483.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|324328397|gb|ADY23657.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|260550240|ref|ZP_05824453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406768|gb|EEX00248.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 182

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 513

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R+ RK   LTQ ++ +  G +QS ++ +E G   +++D +  ++  LD+    L KP
Sbjct: 19 IRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLNRVSEALDSEFVTLGKP 76


>gi|228958693|ref|ZP_04120408.1| hypothetical protein bthur0005_21950 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228800986|gb|EEM47888.1| hypothetical protein bthur0005_21950 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 204

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|229044173|ref|ZP_04191852.1| hypothetical protein bcere0027_22090 [Bacillus cereus AH676]
 gi|228725157|gb|EEL76435.1| hypothetical protein bcere0027_22090 [Bacillus cereus AH676]
          Length = 204

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|255693490|ref|ZP_05417165.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides finegoldii DSM 17565]
 gi|260620682|gb|EEX43553.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides finegoldii DSM 17565]
          Length = 181

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 20  MIFVNN----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            IF+ N     R  R+    +Q+ +    G + S IS++ETGK+    D +  +   LD 
Sbjct: 71  FIFMENIGTMLRKQRELKGFSQEYVAGLVGVSTSVISKIETGKTKARFDVISNICKALDM 130

Query: 76  PLWKLLKP 83
             + LL P
Sbjct: 131 NWYDLLSP 138


>gi|218289525|ref|ZP_03493753.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218240393|gb|EED07575.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 223

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    R +RKE  LT  ++   +G + + IS +E G+      D +  LA  L  P   L
Sbjct: 4  FGQYLRKLRKERNLTINQLALYSGVSSALISRIENGQRGRPKPDTLKKLASALKVPYEDL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|183601133|ref|ZP_02962626.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC
          25827]
 gi|188019477|gb|EDU57517.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC
          25827]
          Length = 131

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP+ K D    S  +             +RKE  +T K++      +Q  IS  E G   
Sbjct: 8  MPKNKLD---DSRTVFT--KAIGKEIHKLRKERSMTGKDLAKLVNVSQQQISRYECGVCN 62

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          I ID +I++ + LD  L    
Sbjct: 63 ITIDTLIVILNALDVSLTDFF 83


>gi|184153646|ref|YP_001841987.1| hypothetical protein LAR_0991 [Lactobacillus reuteri JCM 1112]
 gi|227364982|ref|ZP_03849023.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
 gi|325681705|ref|ZP_08161225.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri
           MM4-1A]
 gi|183224990|dbj|BAG25507.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227069993|gb|EEI08375.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
 gi|324979017|gb|EGC15964.1| hypothetical protein HMPREF0536_10144 [Lactobacillus reuteri
           MM4-1A]
          Length = 266

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           +    L      E+    NN    RK+  +TQKE+  + G  + +ISE E G   I I+ 
Sbjct: 72  KAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIET 131

Query: 66  MIILAHTLDTPLWKLL 81
           +  L+  L +    LL
Sbjct: 132 LKKLSEALGSEASYLL 147


>gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM
          2048]
 gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST196]
 gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST196]
 gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM
          2048]
          Length = 107

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|75762955|ref|ZP_00742756.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74489557|gb|EAO52972.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 204

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 24 QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|229188228|ref|ZP_04315304.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1]
 gi|228595248|gb|EEK52992.1| Transcriptional regulator, pbsX [Bacillus cereus BGSC 6E1]
          Length = 65

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L   +  +  P
Sbjct: 2  NRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGKSVESIFGP 61


>gi|255316576|ref|ZP_05358159.1| putative regulatory protein [Clostridium difficile QCD-76w55]
          Length = 120

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R +  +TQ+ I N      S +S +ETGK+ +++  +I +A+ L   +  
Sbjct: 6  KALGKRIKIARIKKGITQESIANEIDITPSHLSNVETGKTKVSLPTLIDIANALSINIDS 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|222097971|ref|YP_002532028.1| DNA-binding protein [Bacillus cereus Q1]
 gi|221242029|gb|ACM14739.1| DNA-binding protein [Bacillus cereus Q1]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|254510314|ref|ZP_05122381.1| transcriptional regulator, XRE family with cupin sensor
          [Rhodobacteraceae bacterium KLH11]
 gi|221534025|gb|EEE37013.1| transcriptional regulator, XRE family with cupin sensor
          [Rhodobacteraceae bacterium KLH11]
          Length = 211

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 39 RLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 95


>gi|210622425|ref|ZP_03293157.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM
          13275]
 gi|210154241|gb|EEA85247.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM
          13275]
          Length = 66

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    +TQK++  + G  +  IS +E G     I+  I +   L   L +L 
Sbjct: 6  KIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDELF 62


>gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 181

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +         RK   L+ +E+        S +S++E G +  +I  + +LA TLD P 
Sbjct: 2  ENIDIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKVLAKTLDVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC
          29799]
 gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC
          29799]
          Length = 253

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++  F      +R+E  LTQKE+  R   +   +S+ E G S  ++  ++ +A  L   +
Sbjct: 5  DKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLSLPDVGLLLPMADCLGVTV 64

Query: 78 WKLLK 82
           +LL+
Sbjct: 65 TELLR 69


>gi|328949069|ref|YP_004366406.1| hypothetical protein Tresu_2240 [Treponema succinifaciens DSM
          2489]
 gi|328449393|gb|AEB15109.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 107

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  N +  RK++ ++Q++   +   + + +S +ETG   +    +  +    D    
Sbjct: 7  RKIFGENVKYYRKKSGMSQEQFAEKLEISPNHLSVIETGGKFVTYKLLERIVAAFDVMPA 66

Query: 79 KLL 81
           L 
Sbjct: 67 ALF 69


>gi|299134081|ref|ZP_07027274.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298590828|gb|EFI51030.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 230

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +RK  + T   +    G  + ++S++ETG+ T  +  +  LA  L T L  L+
Sbjct: 43  LGRRIRQLRKMQERTLDSLAQEVGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 102

Query: 82  K 82
           +
Sbjct: 103 E 103


>gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 106

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK   +TQ ++    G + + I  +E G        +  +A  L   + +L 
Sbjct: 4  FGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEELC 63

Query: 82 KP 83
           P
Sbjct: 64 GP 65


>gi|169828385|ref|YP_001698543.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
 gi|168992873|gb|ACA40413.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
          Length = 194

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R IRK  +++ +E+ + +  ++  + ++E G++   ++ +  +   L  PL  LL
Sbjct: 22 VGMNLREIRKNKRMSLEELASVSNVSKLTLGKIERGETNPTVNILWKICRGLHIPLISLL 81


>gi|166363190|ref|YP_001655463.1| hypothetical protein MAE_04490 [Microcystis aeruginosa NIES-843]
 gi|166085563|dbj|BAG00271.1| hypothetical protein MAE_04490 [Microcystis aeruginosa NIES-843]
          Length = 82

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R    ++Q+E+  R    +++IS LE G    ++  ++ LA  L+  + +LL+
Sbjct: 16 IREHRAALGISQEELGLRCHLDRTYISGLERGVRNPSLTALVTLAKGLNITVSQLLE 72


>gi|297567303|ref|YP_003686275.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296851752|gb|ADH64767.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
          9946]
          Length = 130

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R E     K++  ++G +  ++S+LE G++  +++ +  LA T    +  
Sbjct: 1  MTLAERLRELRSERGWRLKDLSEQSGLSVPYLSDLERGRTNPSLETLNTLARTYAMSVQD 60

Query: 80 LLKP 83
          LL+P
Sbjct: 61 LLEP 64


>gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 189

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L    +
Sbjct: 6  GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65


>gi|160893483|ref|ZP_02074268.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50]
 gi|156864878|gb|EDO58309.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50]
          Length = 122

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                IR    LTQ ++      +    S +E GKS+++++ MI L    +  L  L++
Sbjct: 16 GQRIVQIRHANNLTQYQLAEMLDISVKHCSAIERGKSSLSLEKMIDLCDIFNIDLDYLIR 75


>gi|148544266|ref|YP_001271636.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|148531300|gb|ABQ83299.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM
           20016]
          Length = 264

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           +    L      E+    NN    RK+  +TQKE+  + G  + +ISE E G   I I+ 
Sbjct: 70  KAPTLLDRVNFNEKGNPGNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIET 129

Query: 66  MIILAHTLDTPLWKLL 81
           +  L+  L +    LL
Sbjct: 130 LKKLSEALGSEASYLL 145


>gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 184

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +++R+   LTQ+E+ +R    + +IS+LE G  + +++ ++ +   L +      K
Sbjct: 11 GRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEILGSNPADFFK 70


>gi|290956167|ref|YP_003487349.1| hypothetical protein SCAB_16491 [Streptomyces scabiei 87.22]
 gi|260645693|emb|CBG68784.1| putative WD-40 repeat protein [Streptomyces scabiei 87.22]
          Length = 1298

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           ++ D  H  D      + F    R +R+E  L+  ++  RT +++ ++S++ETG     
Sbjct: 7  GQQTDPHHGRDRDAPTTLSFPAQLRRLRQERGLSLTDLARRTHYSKGYLSKIETGAKRPT 66

Query: 63 IDNMIILAHTLDTPLWKLLK 82
          +D +  L   +     +LL+
Sbjct: 67 VD-VARLCDQVLGAEGELLR 85


>gi|255262954|ref|ZP_05342296.1| DNA-binding protein [Thalassiobium sp. R2A62]
 gi|255105289|gb|EET47963.1| DNA-binding protein [Thalassiobium sp. R2A62]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 16 LRER-MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            ER      + R +RK   LT  ++      +  W+S++E G S  ++ ++  LA  LD
Sbjct: 5  QPERVRTLGADLRALRKARGLTLVDLAETLDRSVGWLSQVERGMSEPSVTDLRHLAAALD 64

Query: 75 TPLWKLLK 82
            +  L +
Sbjct: 65 VSVSSLFR 72


>gi|237728009|ref|ZP_04558490.1| XRE family transcriptional regulator [Citrobacter sp. 30_2]
 gi|226910266|gb|EEH96184.1| XRE family transcriptional regulator [Citrobacter sp. 30_2]
          Length = 182

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R+   L+  EI  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  MIAKSLVRERQRTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|160932607|ref|ZP_02079997.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753]
 gi|156868566|gb|EDO61938.1| hypothetical protein CLOLEP_01449 [Clostridium leptum DSM 753]
          Length = 83

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R++  ++Q+ + +  G  ++ +S +E G+    ++    L+  L      
Sbjct: 5  ETVGAAIRQVREKKGISQEVVSSFAGIGRTHLSAIERGQRKPTLETFFRLSEALGMAASD 64

Query: 80 LLK 82
          L++
Sbjct: 65 LMR 67


>gi|257452737|ref|ZP_05618036.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|257466598|ref|ZP_05630909.1| MerR family transcriptional regulator [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|315917753|ref|ZP_07913993.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC
          25563]
 gi|317059278|ref|ZP_07923763.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|313684954|gb|EFS21789.1| transcriptional regulator [Fusobacterium sp. 3_1_5R]
 gi|313691628|gb|EFS28463.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC
          25563]
          Length = 182

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R E  L+ +E+  +   + S++S++E GK++ +I+N+  +A  LD  +  
Sbjct: 1  MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b]
          Length = 150

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +RKE KLTQKE+       QS IS  E+ K   ++D M+ +A   D P+ +L+
Sbjct: 4  FGDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQELI 63


>gi|56752065|ref|YP_172766.1| transcription regulator [Synechococcus elongatus PCC 6301]
 gi|81300847|ref|YP_401055.1| transcriptional regulator [Synechococcus elongatus PCC 7942]
 gi|56687024|dbj|BAD80246.1| transcription regulator [Synechococcus elongatus PCC 6301]
 gi|81169728|gb|ABB58068.1| transcriptional regulator, XRE family with cupin sensor domain
          [Synechococcus elongatus PCC 7942]
          Length = 230

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R +R+   LT  E+  + G ++  +S++E  +++ +++ +  L   L   L  L 
Sbjct: 25 LGNTIRELRQRHDLTIAEVSQKAGISRGMLSKIENAQTSASLETLERLVSVLGVSLSALF 84

Query: 82 K 82
          K
Sbjct: 85 K 85


>gi|51894099|ref|YP_076790.1| transcriptional regulator [Symbiobacterium thermophilum IAM
          14863]
 gi|51857788|dbj|BAD41946.1| transcriptional regulator [Symbiobacterium thermophilum IAM
          14863]
          Length = 196

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  R +  +T +E+  R+G ++ ++ +LE  K++ ++  +  L+  L  P+  
Sbjct: 8  MSLGHRIRQTRTQKGITLQELAERSGLSKGFLCQLENDKASPSLQALDRLSAGLGVPVAL 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 206

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    D +  +   LD    +LL
Sbjct: 6  LGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNELL 65


>gi|229062058|ref|ZP_04199383.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
 gi|228717210|gb|EEL68885.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
          Length = 181

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  + ++A+ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62


>gi|229163492|ref|ZP_04291443.1| Transcriptional regulator, Xre [Bacillus cereus R309803]
 gi|228620061|gb|EEK76936.1| Transcriptional regulator, Xre [Bacillus cereus R309803]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|229169105|ref|ZP_04296820.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
 gi|228614333|gb|EEK71443.1| Transcriptional regulator, MerR [Bacillus cereus AH621]
          Length = 181

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  + ++A+ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPYLL 62


>gi|168704437|ref|ZP_02736714.1| hypothetical protein GobsU_33184 [Gemmata obscuriglobus UQM 2246]
          Length = 239

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           +       R  RK   LT   + +RTG +  ++S++E GK++ +I+ +  +   L   + 
Sbjct: 171 KEALGAAIRERRKALSLTLSNMSDRTGVSLGYLSQIELGKNSASIETLYRICLALGMKMS 230

Query: 79  KLLK 82
           +L +
Sbjct: 231 ELFQ 234


>gi|149915490|ref|ZP_01904017.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b]
 gi|149810779|gb|EDM70620.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b]
          Length = 215

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P   R   H +D    +      + R +RK   LT  ++ +  G +  W+S++E   S  
Sbjct: 19 PTESRHRMHQTDISRAQ--TLGADLRALRKARGLTLADLADSLGRSVGWLSQVERDLSEP 76

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +I ++  +A  L  P+  L 
Sbjct: 77 SISDLRQIAEQLGVPMSLLF 96


>gi|51893919|ref|YP_076610.1| transcriptional regulator [Symbiobacterium thermophilum IAM
          14863]
 gi|51857608|dbj|BAD41766.1| transcriptional regulator [Symbiobacterium thermophilum IAM
          14863]
          Length = 222

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
                 R +  L  +++  ++G A  +IS+LE G K    ID +  LA  L   +  LL
Sbjct: 2  GERLAWARNQQGLILQQVSEKSGLAVGYISQLEKGAKVNPTIDALGRLAKALGVSIAFLL 61


>gi|148253455|ref|YP_001238040.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405628|gb|ABQ34134.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 225

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           DA            R +RK+  LT  E+    G +   +S++E G  + ++  +  LA  
Sbjct: 33  DATPTLESEIGAEVRRLRKDLDLTVSELGAAAGISAGMLSKIENGSISPSLATLSALAKA 92

Query: 73  LDTPLWKLLK 82
           L+ P+ +L +
Sbjct: 93  LNVPIARLFR 102


>gi|75762636|ref|ZP_00742481.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218895748|ref|YP_002444159.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228899378|ref|ZP_04063640.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
 gi|228963794|ref|ZP_04124935.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|74489883|gb|EAO53254.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218542527|gb|ACK94921.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228795939|gb|EEM43406.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
          str. T04001]
 gi|228860284|gb|EEN04682.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
          Length = 66

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L +L 
Sbjct: 4  SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNELF 61


>gi|332298496|ref|YP_004440418.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332181599|gb|AEE17287.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 106

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++I  +N R +R+E   TQ  +    G    +++ +E+G+  +++D +  L+   D P
Sbjct: 5  KIIVGDNIRRLRREYGWTQAYVAENLGVTAPFLTMIESGQRGMSLDLIEKLSELFDVP 62


>gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 104

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  RK A LTQ E+  +TGF    IS  ETG  T +++ + +LA+ LD  L
Sbjct: 10 IRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQL 61


>gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 194

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++  +T   +   TG ++S +S LE+G    N++ ++ LA     PL +L+
Sbjct: 14 VGPRLRELRRQRNVTLARLAEATGISESTLSRLESGARRPNLELLLPLAKVYGVPLDELV 73


>gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM
          12442]
 gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17]
 gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4]
 gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4]
 gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17]
 gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM
          12442]
          Length = 181

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      + +R+  +L+ +E+        S +S++E G +  +I  + +LA  L+ P 
Sbjct: 2  ENINIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKLLAKALEVPT 61

Query: 78 WKLL 81
          +  L
Sbjct: 62 FSFL 65


>gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3]
 gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3]
          Length = 228

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +N RK  K+TQKE+  R G   + IS  E G +    D +  +A  LD  +  
Sbjct: 7  KYVGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQALDISIND 66

Query: 80 LLKP 83
          L  P
Sbjct: 67 LFPP 70


>gi|229169229|ref|ZP_04296943.1| Transcriptional regulator, Xre [Bacillus cereus AH621]
 gi|228614295|gb|EEK71406.1| Transcriptional regulator, Xre [Bacillus cereus AH621]
          Length = 190

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +++  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|209883861|ref|YP_002287718.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
 gi|209872057|gb|ACI91853.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
          Length = 208

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK  + T   +    G  + ++S++ETG+ T  +  +  LA  L T L  L+
Sbjct: 20 LGRRIRQLRKMQERTLDSLATEIGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 79

Query: 82 K 82
          +
Sbjct: 80 E 80


>gi|169335543|ref|ZP_02862736.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258281|gb|EDS72247.1| hypothetical protein ANASTE_01958 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 126

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R++  LTQ+ +      + S +S +E G + +++  +  +A  L+  L  LL
Sbjct: 12 LGGKIKKARQKENLTQETLAEILDLSASHLSHVENGLAKVSLPTIYSIAKILNVSLDNLL 71


>gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain
          [Burkholderia thailandensis MSMB43]
          Length = 191

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N  R +R+   LT  E     G ++ ++S++E G++T +I +++ +A  L   +
Sbjct: 16 GNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRATPSITSLVGIARALGVTM 70


>gi|310780515|ref|YP_003968847.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
          2926]
 gi|309749838|gb|ADO84499.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM
          2926]
          Length = 178

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE  LT K++ + TG +  +IS +E  +++ ++ N+  +   L   L ++L
Sbjct: 4  LGEKIKFCRKEKGLTLKKLSDMTGLSVGFISNIERNQNSPSVSNLQQICAALSINLMEIL 63

Query: 82 K 82
          +
Sbjct: 64 Q 64


>gi|229109859|ref|ZP_04239443.1| hypothetical protein bcere0018_21200 [Bacillus cereus Rock1-15]
 gi|228673611|gb|EEL28871.1| hypothetical protein bcere0018_21200 [Bacillus cereus Rock1-15]
          Length = 185

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|297565166|ref|YP_003684138.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296849615|gb|ADH62630.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
          9946]
          Length = 187

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                      R  R     T +++  R+G  +S+IS LE   +  ++ +++ +   L 
Sbjct: 6  SPPPSFPIGQRLRATRLAKGFTLEQVAKRSGLDKSFISRLERDATAASVASLLKVCGALG 65

Query: 75 TPLWKLLKP 83
               L  P
Sbjct: 66 IQPGSLFDP 74


>gi|212694682|ref|ZP_03302810.1| hypothetical protein BACDOR_04213 [Bacteroides dorei DSM 17855]
 gi|212663183|gb|EEB23757.1| hypothetical protein BACDOR_04213 [Bacteroides dorei DSM 17855]
          Length = 67

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK+A +TQ ++  + G  +S+IS +ETGK+   +     +A  L 
Sbjct: 7  GQIIEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 58


>gi|169634707|ref|YP_001708443.1| hypothetical protein ABSDF3388 [Acinetobacter baumannii SDF]
 gi|169794401|ref|YP_001712194.1| hypothetical protein ABAYE0206 [Acinetobacter baumannii AYE]
 gi|213159023|ref|YP_002321021.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|215481956|ref|YP_002324138.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|260556833|ref|ZP_05829050.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|301345186|ref|ZP_07225927.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056]
 gi|301510677|ref|ZP_07235914.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058]
 gi|301595815|ref|ZP_07240823.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059]
 gi|332854786|ref|ZP_08435549.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332868898|ref|ZP_08438475.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|332872792|ref|ZP_08440757.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
 gi|169147328|emb|CAM85189.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|169153499|emb|CAP02656.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|193078630|gb|ABO13673.2| putative transcriptional regulator [Acinetobacter baumannii ATCC
          17978]
 gi|213058183|gb|ACJ43085.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|213989083|gb|ACJ59382.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|260409439|gb|EEX02740.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|332727788|gb|EGJ59192.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332733046|gb|EGJ64247.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|332738953|gb|EGJ69815.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
          Length = 182

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|291545628|emb|CBL18736.1| Helix-turn-helix [Ruminococcus sp. SR1/5]
 gi|295108458|emb|CBL22411.1| Helix-turn-helix. [Ruminococcus obeum A2-162]
          Length = 119

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +     +E  +F   F+N R E KLT +E+  +   +  ++ E+E G    +   +  L 
Sbjct: 1  MPKQTDKELGLF---FKNARHEQKLTYEELAEKAEMSSRYLKEIENGGRVPSFHKIRKLV 57

Query: 71 HTLDTPLWKLLKP 83
            L+ P   L  P
Sbjct: 58 RALNVPPEPLFYP 70


>gi|302546828|ref|ZP_07299170.1| putative helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302464446|gb|EFL27539.1| putative helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 102

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 13 DAILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          DA   ++     +    +  R+   ++Q+ +    G +Q+ I+++E G ST  ID M   
Sbjct: 12 DAAPPDKTTTHTWGAFLKRARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAY 71

Query: 70 AHTLDTPL 77
             L   L
Sbjct: 72 ITALGGEL 79


>gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens
          DM4]
 gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
 gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens DM4]
          Length = 209

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R +D    +  +  +        + +RK   L+  E+  ++G A+S IS++E  ++   
Sbjct: 11 GRPKDLVSGAQVLSGQ---LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPT 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  L+  LD  + ++L
Sbjct: 68 LATIWRLSQALDVSIERVL 86


>gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. TM1040]
          Length = 188

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL+
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72


>gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168]
 gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168]
          Length = 200

 Score = 55.4 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RKE  LT +E+ N+   + S ++  E G+ T ++D ++++A   +     LL
Sbjct: 4  FGQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGERTPSLDKLLLIADFFNVSTDYLL 63


>gi|330966069|gb|EGH66329.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str.
          M302091]
          Length = 189

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 32/74 (43%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +           +N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVVFSDLIQ 75


>gi|228917142|ref|ZP_04080700.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228842560|gb|EEM87650.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 190

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 189

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L    +
Sbjct: 6  GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65


>gi|108805694|ref|YP_645631.1| MerR family transcriptional regulator [Rubrobacter xylanophilus DSM
           9941]
 gi|108766937|gb|ABG05819.1| transcriptional regulator, MerR family [Rubrobacter xylanophilus
           DSM 9941]
          Length = 292

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +A+ T KE+   TG + S+IS LE G S  ++ ++  LA      + +L 
Sbjct: 119 GERLRRLRVKARKTLKEVSEATGLSISFISALERGGSGASVASLRRLAEAYGVTMRELF 177


>gi|90417956|ref|ZP_01225868.1| conserved hypothetical protein with helix turn helix motif
          [Aurantimonas manganoxydans SI85-9A1]
 gi|90337628|gb|EAS51279.1| conserved hypothetical protein with helix turn helix motif
          [Aurantimonas manganoxydans SI85-9A1]
          Length = 193

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R    L+ K++    G ++S +S++ETG+    +  +  L   L   +  L 
Sbjct: 12 VGRKLRHMRNLHNLSLKQLAATVGCSESMLSKVETGRVNPTLTMLRKLVDALGINIAFLF 71

Query: 82 KP 83
          +P
Sbjct: 72 EP 73


>gi|86751755|ref|YP_488251.1| anaerobic benzoate catabolism transcriptional regulator
          [Rhodopseudomonas palustris HaA2]
 gi|86574783|gb|ABD09340.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Rhodopseudomonas palustris HaA2]
          Length = 305

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    +++K +   +G ++ +I++LE+GK  ++I  +  ++  L TPL  LL
Sbjct: 15 LGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRVSDALATPLEDLL 74


>gi|75764075|ref|ZP_00743675.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228903022|ref|ZP_04067161.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
 gi|74488436|gb|EAO52052.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228856615|gb|EEN01136.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
          Length = 194

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77

Query: 80 LL 81
          L+
Sbjct: 78 LM 79


>gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 189

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L    +
Sbjct: 6  GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65


>gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 189

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R   KLT KE+  +T  +  ++S+LE G +T+ ID++  +A  LD  L    +
Sbjct: 6  GKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFFQ 65


>gi|67459679|ref|YP_247303.1| Phage-related transcriptional regulator [Rickettsia felis
           URRWXCal2]
 gi|67005212|gb|AAY62138.1| Phage-related transcriptional regulator [Rickettsia felis
           URRWXCal2]
          Length = 119

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 16  LRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L ++++   N  +  R+   L+Q+++  + G  + +IS +E G     ID +  L+  L+
Sbjct: 54  LVQKILNGENPIKVYREYRGLSQEQLAIKIGKTKQYISFIEKGLRKGTIDTLKKLSTVLN 113

Query: 75  TPLWKL 80
             L  L
Sbjct: 114 VDLDML 119


>gi|300311649|ref|YP_003775741.1| hypothetical protein Hsero_2334 [Herbaspirillum seropedicae SmR1]
 gi|300074434|gb|ADJ63833.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 105

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R+ D   LS A++     F    R +R+    +Q+ +   +   +S+I E+E G +  
Sbjct: 7  PARQADVEALSSALV---QSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIA 63

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          ++  +  LA  L      L+ 
Sbjct: 64 SLVTVEKLATALTLSPSALVT 84


>gi|255009477|ref|ZP_05281603.1| hypothetical protein Bfra3_10082 [Bacteroides fragilis 3_1_12]
 gi|313147247|ref|ZP_07809440.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136014|gb|EFR53374.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 103

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +    R+ RK+ K+TQ+E+  + G A+S+I+ +E G++ I I +   +A  L   
Sbjct: 43 YGEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGIE 97


>gi|169335193|ref|ZP_02862386.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257931|gb|EDS71897.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 120

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK+   TQ+ +      + S +S +E+G + I++  ++ +A TL+  L  LL
Sbjct: 8  VGGKIKEARKKQGYTQETLAEIIDLSASHLSHVESGIAKISLPTIVAIAKTLNVSLDDLL 67


>gi|47568826|ref|ZP_00239520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|228983895|ref|ZP_04144089.1| Transcriptional regulator [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229154395|ref|ZP_04282515.1| Transcriptional regulator [Bacillus cereus ATCC 4342]
 gi|229159774|ref|ZP_04287782.1| Transcriptional regulator [Bacillus cereus R309803]
 gi|229171478|ref|ZP_04299062.1| Transcriptional regulator [Bacillus cereus MM3]
 gi|47554502|gb|EAL12859.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|228612016|gb|EEK69254.1| Transcriptional regulator [Bacillus cereus MM3]
 gi|228623711|gb|EEK80529.1| Transcriptional regulator [Bacillus cereus R309803]
 gi|228629219|gb|EEK85926.1| Transcriptional regulator [Bacillus cereus ATCC 4342]
 gi|228775874|gb|EEM24246.1| Transcriptional regulator [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|324324735|gb|ADY19995.1| transcriptional regulator [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 66

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 126

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R E  LTQK++    G A S I + E+G     I+ +  +A  LD P+ +LL
Sbjct: 6  GDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLL 64


>gi|326942288|gb|AEA18184.1| transcriptional regulator [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 190

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 118

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF    R  R    L+Q  +  + G   + +S  E+G    + DN+  LA  LD     
Sbjct: 8  EIFSKRLREARDLRGLSQALLAAKAGLPPASVSHFESGPRKPSFDNLKALAKALDVTTDY 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 204

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R E  L+  E+  RTG +   +S++E G S++ +  +  LA  LD     L
Sbjct: 21 LVGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSSLRVRVIWPLAAALDVEPSAL 80

Query: 81 L 81
          +
Sbjct: 81 I 81


>gi|205375249|ref|ZP_03228039.1| putative DNA-binding protein [Bacillus coahuilensis m4-4]
          Length = 212

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
          M F    + +RKE  ++Q+E+  ++G + + IS +ETG    I+ D +  +A  L+    
Sbjct: 1  MSFGEYLKQLRKEKSISQRELAEKSGVSNAEISRIETGGRQKISPDVLRAIAPILEISYE 60

Query: 79 KLL 81
          +L+
Sbjct: 61 ELM 63


>gi|167034149|ref|YP_001669380.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860637|gb|ABY99044.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 271

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            + R++R++A L+Q ++    G +Q  +S +ETG++  +   +  L   L  PL
Sbjct: 18 GQHLRHLRRQASLSQLDLALLAGLSQRHLSCVETGRARASPSTLHALLSALGAPL 72


>gi|307947017|ref|ZP_07662352.1| transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307770681|gb|EFO29907.1| transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 207

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 10 HLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
              ++  ER            R+ RK+  +T  E+   T  +   +S++E G ++ ++ 
Sbjct: 6  QDPHSVREEREKVLEVAIGRKVRSFRKQRGITVAELSKLTDLSVGMLSKIENGNTSPSLT 65

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  L+  L  PL  L K
Sbjct: 66 TLQNLSRALSVPLTALFK 83


>gi|110678167|ref|YP_681174.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
 gi|109454283|gb|ABG30488.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
          Length = 82

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +    R  RK A L+Q+E+  RT  + S+IS LET +    +  M  +   L   L +
Sbjct: 10 EAYARVLRERRKAANLSQEELAFRTDLSMSYISFLETCRRQPTLTVMDAICRELGVSLTE 69

Query: 80 LL 81
           +
Sbjct: 70 FI 71


>gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 102

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          E  I     +  R +A +TQ+++  + G  +S+IS +E G + I +  +  +   L 
Sbjct: 38 EAFIIGERLKAERLKAGMTQEQLAAKIGTKKSYISRIENGHADIQLSTLFKIFQGLG 94


>gi|295106074|emb|CBL03617.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 98

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 1  MPRRKRDEPHLSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          MP + R    L    L + +   F  N R +R+   LT+KE+ +  G ++S I+++E G 
Sbjct: 1  MPEKSRQAKMLGKDPLVQLLARTFGENVRVLRESQHLTKKELADMVGSSRSHITDIEDGL 60

Query: 59 STINIDNMIILAHTLDTPLWKLLKP 83
             +   ++  A   + PL  LL P
Sbjct: 61 IDADFSKVVKFARAFERPLDALLAP 85


>gi|269792208|ref|YP_003317112.1| transcriptional regulator, XRE family [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269099843|gb|ACZ18830.1| transcriptional regulator, XRE family [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 117

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+   LTQ+ + +    ++ +I  +E+ +   ++D +  LA  LD  +  
Sbjct: 1  MSLGMRVKVLRRAKGLTQQGLADTVNVSRVYIQSIESNRRRPSMDLLERLAEALDVTVAD 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|228954773|ref|ZP_04116794.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229072008|ref|ZP_04205218.1| Transcriptional regulator, Xre [Bacillus cereus F65185]
 gi|229081756|ref|ZP_04214249.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2]
 gi|229111966|ref|ZP_04241510.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15]
 gi|229152697|ref|ZP_04280884.1| Transcriptional regulator, Xre [Bacillus cereus m1550]
 gi|229180769|ref|ZP_04308107.1| Transcriptional regulator, Xre [Bacillus cereus 172560W]
 gi|229192702|ref|ZP_04319661.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876]
 gi|228590792|gb|EEK48652.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876]
 gi|228602747|gb|EEK60230.1| Transcriptional regulator, Xre [Bacillus cereus 172560W]
 gi|228630760|gb|EEK87402.1| Transcriptional regulator, Xre [Bacillus cereus m1550]
 gi|228671530|gb|EEL26830.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15]
 gi|228701601|gb|EEL54094.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2]
 gi|228711167|gb|EEL63132.1| Transcriptional regulator, Xre [Bacillus cereus F65185]
 gi|228804893|gb|EEM51491.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 194

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77

Query: 80 LL 81
          L+
Sbjct: 78 LM 79


>gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC
          35646]
 gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC
          35646]
          Length = 114

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 8  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|30018872|ref|NP_830503.1| PbsX family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|30260845|ref|NP_843222.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|42779842|ref|NP_977089.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47525976|ref|YP_017325.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183686|ref|YP_026938.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49476873|ref|YP_034951.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52144616|ref|YP_082212.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65318122|ref|ZP_00391081.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|118476376|ref|YP_893527.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163938619|ref|YP_001643503.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|165872916|ref|ZP_02217540.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167635166|ref|ZP_02393482.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641831|ref|ZP_02400071.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170689445|ref|ZP_02880636.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170709002|ref|ZP_02899433.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177652794|ref|ZP_02935167.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190568571|ref|ZP_03021477.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196042062|ref|ZP_03109347.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196047106|ref|ZP_03114324.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|206977794|ref|ZP_03238684.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217958280|ref|YP_002336826.1| DNA-binding protein [Bacillus cereus AH187]
 gi|218901889|ref|YP_002449723.1| DNA-binding protein [Bacillus cereus AH820]
 gi|222094450|ref|YP_002528509.1| transcriptional regulator [Bacillus cereus Q1]
 gi|225862672|ref|YP_002748050.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227816434|ref|YP_002816443.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228906448|ref|ZP_04070329.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
 gi|229010123|ref|ZP_04167337.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
 gi|229056462|ref|ZP_04195875.1| Transcriptional regulator [Bacillus cereus AH603]
 gi|229089756|ref|ZP_04221016.1| Transcriptional regulator [Bacillus cereus Rock3-42]
 gi|229108302|ref|ZP_04237921.1| Transcriptional regulator [Bacillus cereus Rock1-15]
 gi|229120344|ref|ZP_04249594.1| Transcriptional regulator [Bacillus cereus 95/8201]
 gi|229126121|ref|ZP_04255142.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
 gi|229131641|ref|ZP_04260523.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
 gi|229137494|ref|ZP_04266105.1| Transcriptional regulator [Bacillus cereus BDRD-ST26]
 gi|229143419|ref|ZP_04271848.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|229165635|ref|ZP_04293408.1| Transcriptional regulator [Bacillus cereus AH621]
 gi|229183027|ref|ZP_04310259.1| Transcriptional regulator [Bacillus cereus BGSC 6E1]
 gi|229195018|ref|ZP_04321795.1| Transcriptional regulator [Bacillus cereus m1293]
 gi|229602348|ref|YP_002865290.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254684228|ref|ZP_05148088.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254725890|ref|ZP_05187672.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254734410|ref|ZP_05192123.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254742096|ref|ZP_05199783.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755782|ref|ZP_05207815.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254762352|ref|ZP_05214196.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|296501446|ref|YP_003663146.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|301052344|ref|YP_003790555.1| transcriptional regulator [Bacillus anthracis CI]
 gi|29894414|gb|AAP07704.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC
          14579]
 gi|30254294|gb|AAP24708.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|42735759|gb|AAS39697.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47501124|gb|AAT29800.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177613|gb|AAT52989.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49328429|gb|AAT59075.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|51978085|gb|AAU19635.1| transcriptional regulator [Bacillus cereus E33L]
 gi|118415601|gb|ABK84020.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|163860816|gb|ABY41875.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|164711329|gb|EDR16882.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510179|gb|EDR85585.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529425|gb|EDR92176.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170126104|gb|EDS95000.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170666607|gb|EDT17379.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172081828|gb|EDT66897.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190560365|gb|EDV14344.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196022087|gb|EDX60776.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196027087|gb|EDX65709.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|206743991|gb|EDZ55408.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217065587|gb|ACJ79837.1| DNA-binding protein [Bacillus cereus AH187]
 gi|218536097|gb|ACK88495.1| DNA-binding protein [Bacillus cereus AH820]
 gi|221238507|gb|ACM11217.1| transcriptional regulator [Bacillus cereus Q1]
 gi|225788360|gb|ACO28577.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227005797|gb|ACP15540.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228588453|gb|EEK46494.1| Transcriptional regulator [Bacillus cereus m1293]
 gi|228600484|gb|EEK58072.1| Transcriptional regulator [Bacillus cereus BGSC 6E1]
 gi|228617870|gb|EEK74922.1| Transcriptional regulator [Bacillus cereus AH621]
 gi|228640047|gb|EEK96448.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|228646052|gb|EEL02275.1| Transcriptional regulator [Bacillus cereus BDRD-ST26]
 gi|228651867|gb|EEL07822.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
 gi|228657328|gb|EEL13145.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
 gi|228663154|gb|EEL18744.1| Transcriptional regulator [Bacillus cereus 95/8201]
 gi|228675139|gb|EEL30364.1| Transcriptional regulator [Bacillus cereus Rock1-15]
 gi|228693564|gb|EEL47267.1| Transcriptional regulator [Bacillus cereus Rock3-42]
 gi|228720936|gb|EEL72485.1| Transcriptional regulator [Bacillus cereus AH603]
 gi|228751256|gb|EEM01068.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
 gi|228853175|gb|EEM97951.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
 gi|229266756|gb|ACQ48393.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|296322498|gb|ADH05426.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|300374513|gb|ADK03417.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
          CI]
          Length = 66

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271]
 gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271]
          Length = 107

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|89097282|ref|ZP_01170172.1| hypothetical protein B14911_16925 [Bacillus sp. NRRL B-14911]
 gi|89088105|gb|EAR67216.1| hypothetical protein B14911_16925 [Bacillus sp. NRRL B-14911]
          Length = 98

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN-MIILAH 71
           + +E++++  +  + +R E KL+Q+++   TG+++ +IS++E      ++      +A 
Sbjct: 17 PLDKEQILYIGSTIKRLRAEQKLSQEDLAGLTGYSREYISKVEQNHIDPSLGAGTASIAK 76

Query: 72 TLDTPLWKLLK 82
                W+L+K
Sbjct: 77 AFGLKTWELIK 87


>gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 185

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F      +RKEA LTQ+++  +   ++  +++ E G+S  ++  +  +A T +  L +
Sbjct: 1  MVFSEQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family
          [Cyanothece sp. PCC 7424]
 gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family
          [Cyanothece sp. PCC 7424]
          Length = 377

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + IR    L+Q+++    G ++  IS +E+G+   +    + LA  L   +  L 
Sbjct: 9  NNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVEDLF 66


>gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC
          35704]
 gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC
          35704]
          Length = 257

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R++  ++Q+++ +R G  +  +S+ E+G +   +  +I L+      +  L+
Sbjct: 3  FSEKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDYLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|167747593|ref|ZP_02419720.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662]
 gi|239623031|ref|ZP_04666062.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652955|gb|EDR97084.1| hypothetical protein ANACAC_02314 [Anaerostipes caccae DSM 14662]
 gi|239522610|gb|EEQ62476.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 120

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N R +R+E   T +++  R G + + +S++E G   +++++ + +   L+ 
Sbjct: 8  AQNIRTLREERGYTIEKLAERAGVSANHMSKVENGLRNLSMESYLNVLEALNV 60


>gi|86133152|ref|ZP_01051734.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
 gi|85820015|gb|EAQ41162.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
          Length = 494

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+IF    + IR E  L+   +   +G ++S+++E+E GK     D +++L+ +L+    
Sbjct: 9  RLIFGLKLKQIRTERNLSLFGLAKLSGLSKSYLNEIEKGKKYPKTDKILLLSESLEVSYD 68

Query: 79 KLL 81
           L+
Sbjct: 69 NLV 71


>gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134]
 gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134]
          Length = 251

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R IR    L+Q+         +  +   E G+S   ID +I +A+    P+  LL
Sbjct: 4  FGKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTVIKIANYFSIPIDDLL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|150018283|ref|YP_001310537.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904748|gb|ABR35581.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 68

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E ++  NN + +R E KL+Q ++    G +++ IS +ETG+        ++L   LD   
Sbjct: 2  EELVLHNNLKEVRTEQKLSQSQLAEMVGVSRNTISSIETGEFNPTAKLALVLCVALDKKF 61

Query: 78 WKLL 81
           +L 
Sbjct: 62 EELF 65


>gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter
          propionicus DSM 2379]
 gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family
          [Pelobacter propionicus DSM 2379]
          Length = 368

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 42/81 (51%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PR +++    S  + RE +   N+ +  R+E   +Q+E+  R G +++ +S +ETGK   
Sbjct: 6  PRERQNTVTHSIIMSREEIPLSNHIKKFREERGWSQQELAERAGLSRAGVSAIETGKLVP 65

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          +    + LA     P+ +L +
Sbjct: 66 STVAALALAKVFACPVEELFQ 86


>gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC
          29799]
 gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC
          29799]
          Length = 296

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N ++ RK   ++Q+E+  +    +  +S+ E G S  + D +I +A  L+  + +LL
Sbjct: 6  KNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSVPDADVLIRMAELLNVSVSQLL 63


>gi|111025296|ref|YP_707716.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110824275|gb|ABG99558.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 254

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H     + E  I     +  R + KL+ +++ ++ G + S +S++E GK+  ++  +  L
Sbjct: 26 HTERGTVVEEEI-GVALKRARLDKKLSLRQVADQLGISTSLLSQVENGKTQPSVKTLFGL 84

Query: 70 AHTLDTPLWKLL 81
          A  L+  L K+L
Sbjct: 85 ATVLEVSLDKIL 96


>gi|323519724|gb|ADX94105.1| hypothetical protein ABTW07_3688 [Acinetobacter baumannii
          TCDC-AB0715]
          Length = 182

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|254885026|ref|ZP_05257736.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642730|ref|ZP_07997374.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A]
 gi|254837819|gb|EET18128.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385665|gb|EFV66600.1| hypothetical protein HMPREF9011_02974 [Bacteroides sp. 3_1_40A]
          Length = 100

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK+A +TQ E+  + G  +S+IS +ETGK+   +     +A  L 
Sbjct: 40 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 91


>gi|206579655|ref|YP_002241227.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|206568713|gb|ACI10489.1| DNA-binding protein [Klebsiella pneumoniae 342]
          Length = 200

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 25 VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 84

Query: 81 LKP 83
          L+P
Sbjct: 85 LEP 87


>gi|119854987|ref|YP_935592.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|145226009|ref|YP_001136663.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|119697705|gb|ABL94777.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|145218472|gb|ABP47875.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
          Length = 92

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 1  MPRR-KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP R   D+P  +    R R +  +  R +R E  L+Q+ +   +G A++ + ++E G+ 
Sbjct: 1  MPTRLPADDPDRAQQWQRRRALVGSRIRALRLERGLSQESLALESGVARNQLIQMEHGRR 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
           + I+ +  +A  L   + +++
Sbjct: 61 GVLIERVYDIAEALGVSVNEIV 82


>gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 187

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +M   N    +RK + +TQ+++  +   ++  IS+ E+  ++ ++++++ ++      L 
Sbjct: 14 KMEIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDSTSPDLESIVKISRIFHVSLD 73

Query: 79 KLLK 82
           LLK
Sbjct: 74 DLLK 77


>gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264]
 gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          Bt407]
 gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock1-15]
 gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550]
 gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264]
 gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550]
 gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock1-15]
 gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          Bt407]
 gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 107

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus
          hydrogenoformans Z-2901]
          Length = 254

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  LTQ E+       +S IS  E+ K   + D +I L++  +  +  LL
Sbjct: 3  FGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKLSNFFNVSIDFLL 62


>gi|71907914|ref|YP_285501.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Dechloromonas aromatica RCB]
 gi|71847535|gb|AAZ47031.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB]
          Length = 80

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R    L+Q+ +       ++++S++E G    ++  M  L+  L+T + +LL
Sbjct: 16 LARNMRQARIRRGLSQEALALEAEIDRTYVSQIERGIGNPSLRVMSQLSSVLETEVDELL 75

Query: 82 K 82
          K
Sbjct: 76 K 76


>gi|325569494|ref|ZP_08145590.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
 gi|325157283|gb|EGC69446.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
          Length = 146

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +  LTQ+E+  +    +  IS  E  +ST +ID +I L+      L  
Sbjct: 1  MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLEA 60

Query: 80 LLKP 83
          LLKP
Sbjct: 61 LLKP 64


>gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 106

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     + +RK  KL+Q+E+    G     +S +E GKS  ++D +  +A  L+  L 
Sbjct: 5  KELLGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALNVDLR 64

Query: 79 KLL 81
             
Sbjct: 65 DFF 67


>gi|330901746|gb|EGH33165.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 118

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 31/74 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +            N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 2  HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L+     L++
Sbjct: 62 VAEALEVAFSDLIQ 75


>gi|239503877|ref|ZP_04663187.1| Helix-turn-helix family protein [Acinetobacter baumannii AB900]
          Length = 182

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|226310383|ref|YP_002770277.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226093331|dbj|BAH41773.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 189

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   D      +      + IRKE  L+ +++   +G ++  +  +E G++   I  +  
Sbjct: 3  PETDDPKQVV-LQVGGVLKKIRKEKHLSLEDLSELSGVSKLTLGNIERGETNPTIGVLWK 61

Query: 69 LAHTLDTPLWKLL 81
          ++  L  PL  L 
Sbjct: 62 ISKCLSIPLLALF 74


>gi|152972701|ref|YP_001337847.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|238892309|ref|YP_002917043.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae NTUH-K2044]
 gi|330004503|ref|ZP_08304980.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
 gi|150957550|gb|ABR79580.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544625|dbj|BAH60976.1| putative helix-turn-helix regulatory protein [Klebsiella
          pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328536576|gb|EGF62908.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
          Length = 200

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 25 VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 84

Query: 81 LKP 83
          L+P
Sbjct: 85 LEP 87


>gi|229042280|ref|ZP_04190032.1| hypothetical protein bcere0027_3500 [Bacillus cereus AH676]
 gi|228727071|gb|EEL78276.1| hypothetical protein bcere0027_3500 [Bacillus cereus AH676]
          Length = 77

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R  RK+A  +Q+++  +    +++I  LE  +   +I  +  + + L+    +
Sbjct: 5  KAFGEVLRKHRKKANFSQEQLALQCNLDRTYIGLLERAQRQPSISTIFTICNVLNIAPHE 64

Query: 80 LLK 82
          L+K
Sbjct: 65 LIK 67


>gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str.
          JGS1987]
 gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str.
          JGS1987]
          Length = 184

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +I  N  + IR    L+  E+   TG +++ + ++E G+S   +  +  +A+ L   
Sbjct: 6  LIIGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSNPTVSTLWKIANGLKVS 62


>gi|78067809|ref|YP_370578.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968554|gb|ABB09934.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia sp. 383]
          Length = 183

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei
          subsp. sakei 23K]
 gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family
          [Lactobacillus sakei subsp. sakei 23K]
          Length = 259

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN R +R E  ++Q E+      ++  IS  E G     ++    LA   D P+
Sbjct: 3  NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKGLREPKLETWKKLADYFDVPI 56


>gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L]
 gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L]
          Length = 215

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R   +LTQ+E+ NR   ++ +IS++E   ++ +I  +I +   L T L +  
Sbjct: 40 GEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLTSPSIATLIDILDILGTNLKEFF 98


>gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 182

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R  A ++  E+ +R G + S +S +E G  + +++ +  +A  L+ PL +  
Sbjct: 2  GLQIKALRMAAGISGNELAHRCGVSGSLLSRVERGLVSPSVETLNRIAVGLNVPLSRFF 60


>gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803]
 gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803]
          Length = 149

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Escherichia coli M605]
 gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Escherichia coli M605]
          Length = 108

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
           +N R +R+ AKL+Q+E+ +++G +++ IS LE G +    I  +I +A  L T + +L+
Sbjct: 5  GDNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEELI 64


>gi|300863840|ref|ZP_07108765.1| Transcriptional Regulator, XRE family protein [Oscillatoria sp.
          PCC 6506]
 gi|300338188|emb|CBN53911.1| Transcriptional Regulator, XRE family protein [Oscillatoria sp.
          PCC 6506]
          Length = 82

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
               ILR      +  R  R    ++Q+E+  R    +++IS +E G    ++  +  L
Sbjct: 3  QSKKKILRA---LGHLVRQRRTALGISQEELGLRANLDRTYISGVERGVRNPSLTALTSL 59

Query: 70 AHTLDTPLWKLL 81
          A  LD  +  LL
Sbjct: 60 AKGLDLTVSNLL 71


>gi|229016024|ref|ZP_04172980.1| Transcriptional regulator [Bacillus cereus AH1273]
 gi|229022243|ref|ZP_04178788.1| Transcriptional regulator [Bacillus cereus AH1272]
 gi|228739046|gb|EEL89497.1| Transcriptional regulator [Bacillus cereus AH1272]
 gi|228745257|gb|EEL95303.1| Transcriptional regulator [Bacillus cereus AH1273]
          Length = 66

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + ++  L  L 
Sbjct: 4  SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNKTLNDLF 61


>gi|26989372|ref|NP_744797.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24984232|gb|AAN68261.1|AE016460_7 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
 gi|313499269|gb|ADR60635.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 272

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            + R +R++A L+Q E+   TG +Q  +S +ETG++  +   +  L   LD PL +
Sbjct: 18 GQHLRELRRQANLSQLELALLTGLSQRHLSCVETGRAKASPGTLHALLSALDAPLER 74


>gi|262041673|ref|ZP_06014865.1| DNA-binding protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288937864|ref|YP_003441923.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|290513088|ref|ZP_06552451.1| DNA-binding protein [Klebsiella sp. 1_1_55]
 gi|259040935|gb|EEW42014.1| DNA-binding protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288892573|gb|ADC60891.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
 gi|289774470|gb|EFD82475.1| DNA-binding protein [Klebsiella sp. 1_1_55]
          Length = 182

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  E+  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|326203720|ref|ZP_08193583.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325986160|gb|EGD46993.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 184

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R+E KL+   +   +G ++S + ++E  +    +  M  +A+ L     +L
Sbjct: 7  IISENLKRVREEKKLSLDTVAKLSGVSKSMLGQIERCEVNPTVSTMWKIANGLKVSFSQL 66

Query: 81 L 81
          +
Sbjct: 67 V 67


>gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803]
 gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803]
          Length = 107

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|255102292|ref|ZP_05331269.1| putative phage DNA-binding protein [Clostridium difficile
          QCD-63q42]
          Length = 254

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M    N + IRK+ +LTQ ++   +  +++ +   E  K   NID +  LA  L   
Sbjct: 1  MQIGKNLKKIRKQKELTQIQLAEISDISRNALINYENDKRIPNIDTLSKLAKALKIE 57


>gi|315230325|ref|YP_004070761.1| inosine-5'-monophosphate dehydrogenase-like protein I
          [Thermococcus barophilus MP]
 gi|315183353|gb|ADT83538.1| inosine-5'-monophosphate dehydrogenase-like protein I
          [Thermococcus barophilus MP]
          Length = 186

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R I     R IRKE  +TQ+E+  R G  Q++I++LE+GK    +     +   L
Sbjct: 6  RPIDPREIRRIRKELGITQEELAKRAGVTQAYIAKLESGKVDPRLSTFNRILEAL 60


>gi|184159797|ref|YP_001848136.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211391|gb|ACC58789.1| predicted transcriptional regulator [Acinetobacter baumannii
          ACICU]
 gi|322509710|gb|ADX05164.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
          Length = 182

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLTRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 149

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|16802791|ref|NP_464276.1| hypothetical protein lmo0749 [Listeria monocytogenes EGD-e]
 gi|224501947|ref|ZP_03670254.1| hypothetical protein LmonFR_05442 [Listeria monocytogenes FSL
          R2-561]
 gi|255030915|ref|ZP_05302866.1| hypothetical protein LmonL_20598 [Listeria monocytogenes LO28]
 gi|16410138|emb|CAC98827.1| lmo0749 [Listeria monocytogenes EGD-e]
          Length = 68

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R E  ++Q+E+      ++  IS +E G     ++  I +   L   L  L 
Sbjct: 5  NMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF 61


>gi|330943932|gb|EGH46140.1| RtrR protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 133

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                  R  RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      
Sbjct: 63  KALGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLACDPSG 122

Query: 80  LL 81
           LL
Sbjct: 123 LL 124


>gi|295704614|ref|YP_003597689.1| helix-turn-helix DNA-binding protein [Bacillus megaterium DSM
          319]
 gi|294802273|gb|ADF39339.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium DSM
          319]
          Length = 185

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R IR + + T  E+ +RTG ++  + ++E G++   +  M  +   L+ PL KL+
Sbjct: 10 VGNELRKIRTQREFTLDELADRTGVSKLTLGKIERGETNPTLGVMWKITTGLNIPLTKLV 69


>gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 106

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK   +TQ ++    G + + I  +E G        +  +A  L   + +L 
Sbjct: 4  FGRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEELC 63

Query: 82 KP 83
           P
Sbjct: 64 GP 65


>gi|218134755|ref|ZP_03463559.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990140|gb|EEC56151.1| hypothetical protein BACPEC_02658 [Bacteroides pectinophilus ATCC
          43243]
          Length = 187

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 31/59 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + IR+   ++  ++  +TG ++S ++++E G +  ++  +  +   L     +L+ P
Sbjct: 11 NLKRIRQSKGMSLDQVAEQTGVSKSMLAQIEKGTANPSLGVLGKITSGLRIEFQELIDP 69


>gi|15807634|ref|NP_294753.1| transcription regulator [Deinococcus radiodurans R1]
          Length = 190

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 13 DAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           A   +R        R IR++ +LT +++   +G  +S++S LE   +T ++  ++ +  
Sbjct: 7  RAAAPDRSAHIGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCD 66

Query: 72 TLDTPLWKLLKP 83
           L     +L  P
Sbjct: 67 ALGIRPGELFDP 78


>gi|56478434|ref|YP_160023.1| anaerobic benzoate catabolism transcriptional regulator
          [Aromatoleum aromaticum EbN1]
 gi|56314477|emb|CAI09122.1| Putaive regulator of anaerobic benzoate metabolic operon
          consisting of shikimate kinase-like domain and a
          Helix-turn-helix domain [Aromatoleum aromaticum EbN1]
          Length = 285

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++     R +R    +T+K +  ++G ++ ++++LETG   I+I  +  +A  +  PL  
Sbjct: 10 LMLGERIRELRARRGMTRKALAQQSGVSERYLAQLETGHGNISIILLRQIALGMGLPLVD 69

Query: 80 LLK 82
          L++
Sbjct: 70 LVR 72


>gi|291458798|ref|ZP_06598188.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418594|gb|EFE92313.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 97

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +A+  ER I ++  R  RKEA LTQ E+  +TG +Q+ IS LE G    ++  +  +A  
Sbjct: 22 EALQPERDITMSLIR-ARKEAGLTQAELSEKTGISQADISRLENGTRNPSLALLNRIAEA 80

Query: 73 LDTPLWKLLKP 83
          +++ L     P
Sbjct: 81 VNSTLRIEFVP 91


>gi|262280440|ref|ZP_06058224.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258218|gb|EEY76952.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 182

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R+ A L+  E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +
Sbjct: 6  EIIAKGLNRERQRAGLSLAEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFAR 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 149

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|228960769|ref|ZP_04122407.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229048209|ref|ZP_04193778.1| Transcriptional regulator, Xre [Bacillus cereus AH676]
 gi|229129788|ref|ZP_04258755.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|229147062|ref|ZP_04275422.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228636450|gb|EEK92920.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228653704|gb|EEL09575.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|228723196|gb|EEL74572.1| Transcriptional regulator, Xre [Bacillus cereus AH676]
 gi|228798904|gb|EEM45880.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 194

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77

Query: 80 LL 81
          L+
Sbjct: 78 LM 79


>gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293]
 gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293]
          Length = 153

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 8  MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 67

Query: 80 LLK 82
          L+K
Sbjct: 68 LIK 70


>gi|269956967|ref|YP_003326756.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269305648|gb|ACZ31198.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 101

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R +R     T  ++  R G +  ++SE+E G    + + +  +A  LD  L 
Sbjct: 11 RHVLGDYLRRLRHRRGETLDDVARRAGVSPQYLSEVERGMKEPSSEMIAAIAGALDVTLV 70

Query: 79 KL 80
           L
Sbjct: 71 DL 72


>gi|196044906|ref|ZP_03112140.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|229032148|ref|ZP_04188124.1| Transcriptional regulator, Xre [Bacillus cereus AH1271]
 gi|229186737|ref|ZP_04313895.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1]
 gi|196024394|gb|EDX63067.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|228596750|gb|EEK54412.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1]
 gi|228729154|gb|EEL80154.1| Transcriptional regulator, Xre [Bacillus cereus AH1271]
          Length = 190

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1]
 gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 146

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al
          Hakam]
 gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1]
 gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1]
 gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 149

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|295693657|ref|YP_003602267.1| transcriptional regulator [Lactobacillus crispatus ST1]
 gi|295031763|emb|CBL51242.1| Transcriptional regulator [Lactobacillus crispatus ST1]
          Length = 65

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            +  R    +TQ+++  +   ++  IS +E G    +++  I +   LD  L  L  P
Sbjct: 5  KMKAARVGKDMTQEDLAQQVDVSRQTISAIEKGNYNPSVNLCIKICQVLDKTLDDLFWP 63


>gi|195977160|ref|YP_002122404.1| hypothetical protein Sez_0004 [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195973865|gb|ACG61391.1| hypothetical protein Sez_0004 [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 121

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R E +L+Q  +  +   ++  IS+ E G +T++++N++ LA  L+  L +L+
Sbjct: 5  FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATLDLENLVTLAAVLEVTLDELV 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|153803053|ref|ZP_01957639.1| conserved domain protein [Vibrio cholerae MZO-3]
 gi|124121411|gb|EAY40154.1| conserved domain protein [Vibrio cholerae MZO-3]
          Length = 69

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK   LTQ ++       +S++  +E G+  + ++ +  +A TL     +L
Sbjct: 8  LVGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNLTVEKLYEIAETLGCDAKEL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2]
 gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2]
          Length = 183

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N RNIRK    +       TG +++ + ++E G+S   +  +  +A  L     
Sbjct: 5  QKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESNPTVTTLWKIASGLQVSFS 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 184

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 36/60 (60%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E  L+ +E+ ++   + S++S++E GK++ +I+N+  +A +LD  +  L++
Sbjct: 6  GERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLIE 65


>gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 77

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R + +L+Q+++    G  QS I  +E+      I  M  LA  L   + + 
Sbjct: 1  MVGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESENRNPTIKTMKRLATALGVSIEEF 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans
          ATCC 49185]
          Length = 183

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 36/60 (60%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E  L+ +E+ ++   + S++S++E GK++ +I+N+  +A +LD  +  L++
Sbjct: 5  GERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLIE 64


>gi|41057272|ref|NP_958300.1| hypothetical protein VWBp58 [Streptomyces phage VWB]
 gi|39656095|gb|AAR29746.1| hypothetical protein [Streptomyces phage VWB]
          Length = 76

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L  R +     R+ R    L+Q E+    G     I  +E G S   +  ++ +AH +D
Sbjct: 9  VLARRELIGARIRDARILTNLSQLELATLAGVDHKTIHRVEYGLSDPGLGLLLQIAHAVD 68

Query: 75 TPLWKLL 81
           PL  L+
Sbjct: 69 VPLAVLV 75


>gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605]
 gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605]
          Length = 230

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R+   LTQ  +  R G  ++ IS+ E+G +T N  N+I LA  L+     LL
Sbjct: 5  RIREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWLL 61


>gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 192

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N R++R +  +T  E+  R+  ++  + ++E G++  +I+ +  +A  L   + +L++
Sbjct: 12 AANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTNPSINTLNRIAEALGVSIGRLVE 71


>gi|260588959|ref|ZP_05854872.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|331083318|ref|ZP_08332431.1| hypothetical protein HMPREF0992_01355 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|260540738|gb|EEX21307.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|330404399|gb|EGG83944.1| hypothetical protein HMPREF0992_01355 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 77

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 9/67 (13%)

Query: 24 NNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLD 74
            FR +       RK   LTQ ++    G +++ IS +E    K++I++D++  +A  L+
Sbjct: 7  RQFRELGLTISYYRKLKGLTQTQLAESVGLSRTHISNIEAPRVKTSISLDSLFDIAEALE 66

Query: 75 TPLWKLL 81
           P+  L 
Sbjct: 67 VPVRDLF 73


>gi|311894998|dbj|BAJ27406.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 181

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S+A  R R     N ++ R    L+ +++  R G ++  +S+LE   +   I+ +  +A
Sbjct: 1  MSEATARLRTAIAGNLKHARLVRGLSLRDLAERAGVSKGLLSQLEHSAANPTIEVLGAVA 60

Query: 71 HTLDTPLWKLLK 82
            L   +  L++
Sbjct: 61 AALGLEVADLIR 72


>gi|295101684|emb|CBK99229.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii L2-6]
          Length = 255

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++  F +    +R+E  +TQKE+      +   +S+ E G S  +I  ++ LA  L+  +
Sbjct: 5  DKAAFGHFLAQLRREKGMTQKELAATLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTV 64

Query: 78 WKLLK 82
           +LL+
Sbjct: 65 AELLQ 69


>gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621]
 gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621]
          Length = 107

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|134096777|ref|YP_001102438.1| Cro/CI family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291005179|ref|ZP_06563152.1| Cro/CI family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133909400|emb|CAL99512.1| transcriptional regulator, Cro/CI family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 201

 Score = 55.0 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M     D+P   +    + +         +R E  L Q  +  R    Q+ ++ +E+G +
Sbjct: 1  MVGGVSDQPETPNGSAGQALAGLGGRIGRLRTERGLDQATLARRAELEQTHLAGVESGTA 60

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
          T ++  +  LA  LD  L +L  
Sbjct: 61 TPSLPVLAQLAEALDVGLSELFT 83


>gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121]
 gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121]
          Length = 203

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R++  LT + +   TG + S +S LE+GK    +D ++ LA      L +L+
Sbjct: 16 GPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESGKRRPTLDLLLPLARAHRVALDQLV 74


>gi|256822716|ref|YP_003146679.1| XRE family transcriptional regulator [Kangiella koreensis DSM
          16069]
 gi|256796255|gb|ACV26911.1| transcriptional regulator, XRE family [Kangiella koreensis DSM
          16069]
          Length = 242

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R++R  +  TQ E   + G  QS++S++E  KS  + +    L    +    +
Sbjct: 1  MTLGEKLRSLRSTSSWTQPEFARKLGIEQSYLSKMENDKSIPSTEMFDKLCTAYEVTPDE 60

Query: 80 LLK 82
          +LK
Sbjct: 61 MLK 63


>gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239]
 gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239]
          Length = 141

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F N  + +RKE  ++Q+++      ++  IS+ E+GK+  +I+N+I+L       L
Sbjct: 3  FNNKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSL 58


>gi|149914665|ref|ZP_01903195.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b]
 gi|149811458|gb|EDM71293.1| hypothetical protein RAZWK3B_13769 [Roseobacter sp. AzwK-3b]
          Length = 210

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 1  MPRRKRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55
          MP+ K         +   R            R +R    +T  ++   TG +   +S++E
Sbjct: 1  MPQTK--LSQDPHKLRETREKNLETAIGREVREVRHARGMTVADLAEATGLSVGMLSKIE 58

Query: 56 TGKSTINIDNMIILAHTLDTP 76
           G ++ ++  +  L+  L  P
Sbjct: 59 NGVTSPSLTTLQALSSALSVP 79


>gi|30020510|ref|NP_832141.1| transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|229127815|ref|ZP_04256801.1| hypothetical protein bcere0015_22620 [Bacillus cereus BDRD-Cer4]
 gi|29896061|gb|AAP09342.1| Transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|228655580|gb|EEL11432.1| hypothetical protein bcere0015_22620 [Bacillus cereus BDRD-Cer4]
          Length = 185

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|15894856|ref|NP_348205.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024531|gb|AAK79545.1|AE007667_10 Predicted transcriptional regulator [Clostridium acetobutylicum
          ATCC 824]
 gi|325508994|gb|ADZ20630.1| transcriptional regulator [Clostridium acetobutylicum EA 2018]
          Length = 110

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +  RN RK    TQ+ +      +  ++S++E GK+ IN++ ++ +   L+     +
Sbjct: 7  IIGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLNITPSYI 66

Query: 81 LK 82
          L 
Sbjct: 67 LT 68


>gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1]
          Length = 322

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF +    +RK++ ++Q+E+  + G ++  +S+ E  +ST +++ ++ ++   D     
Sbjct: 1  MIFADKLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|228944445|ref|ZP_04106818.1| Transcriptional regulator [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228815347|gb|EEM61595.1| Transcriptional regulator [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 66

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKVKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 4222]
 gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 4222]
          Length = 107

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273]
 gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272]
 gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272]
 gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273]
          Length = 107

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|239626413|ref|ZP_04669444.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239516559|gb|EEQ56425.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 232

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N RN+RK+ K++Q+++       +  +S  ETG++  +I+ +  +A   DT
Sbjct: 5  GKNIRNLRKQKKMSQEQLAGLLHVTRQAVSNWETGRTQPDIETLEAIAGAFDT 57


>gi|149183902|ref|ZP_01862291.1| transcriptional regulator [Bacillus sp. SG-1]
 gi|148848385|gb|EDL62646.1| transcriptional regulator [Bacillus sp. SG-1]
          Length = 118

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     ++IR+   +T  E+  R   ++S+IS +E   +   +I  +  +A  L+ PL  
Sbjct: 1  MVGEKIKSIRENKGITINELAQRADISKSYISTIERDIQKNPSIKVLEKIAAALEVPLDM 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 204

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E K+T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 27 VGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 86

Query: 82 KP 83
           P
Sbjct: 87 AP 88


>gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 268

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  R E  L+Q ++  + G ++  IS+ ETG S  ++D +I L+   D  L  L+
Sbjct: 3  LGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSVPDLDKLIALSELFDVSLDNLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|579178|emb|CAA26567.1| unnamed protein product [Bacillus phage phi105]
          Length = 147

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + IRKE KLTQ ++  +   ++S+++++E  +   ++  +  +A  L   +  
Sbjct: 4  MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 63

Query: 80 LL 81
          ++
Sbjct: 64 IV 65


>gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519]
 gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii]
          Length = 183

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  + +RKE   T K++ ++T  + S++S++E G S++ I ++  L      P+
Sbjct: 8  ADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSSSLAITSLKKLVDAFSVPM 62


>gi|265750635|ref|ZP_06086698.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237531|gb|EEZ22981.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 77

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              RK+A +TQ ++  + G  +S+IS +ETGK+   +     +A  L 
Sbjct: 20 IEEARKKANMTQAKLAEKIGTNKSYISRVETGKTEPKVSTFYRIASALG 68


>gi|239982942|ref|ZP_04705466.1| hypothetical protein SalbJ_26149 [Streptomyces albus J1074]
          Length = 199

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R     N R  R     + +E+   TG ++  +S++E  ++   ++ +  LA  L T  
Sbjct: 22 AREALAQNVRRHRLARGWSLRELGAATGISKGLLSQIERAEANPTLEILTRLADVLATTC 81

Query: 78 WKLLK 82
            LL+
Sbjct: 82 TDLLR 86


>gi|218676103|ref|YP_002394922.1| hypothetical protein VS_II0323 [Vibrio splendidus LGP32]
 gi|218324371|emb|CAV25742.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 521

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63
          LS +++R+        RN+RK   LT +++  R          + S++S +E GK   +I
Sbjct: 19 LSKSLVRQSHFLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSI 78

Query: 64 DNMIILAHTLDT-PLWKL 80
          D + ++A      P W L
Sbjct: 79 DMLEVIAQVFQKNPTWFL 96


>gi|218899660|ref|YP_002448071.1| DNA-binding protein [Bacillus cereus G9842]
 gi|218541106|gb|ACK93500.1| DNA-binding protein [Bacillus cereus G9842]
          Length = 190

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|153955543|ref|YP_001396308.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855938|ref|YP_002473060.1| hypothetical protein CKR_2595 [Clostridium kluyveri NBRC 12016]
 gi|146348401|gb|EDK34937.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219569662|dbj|BAH07646.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 109

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R + +LTQ+++      + S++ ++E G+ ++ +D +I +   L   +  LL
Sbjct: 6  LGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVTVDYLL 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|126738636|ref|ZP_01754341.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126720435|gb|EBA17141.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 188

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL+
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72


>gi|161526154|ref|YP_001581166.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189349130|ref|YP_001944758.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160343583|gb|ABX16669.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
 gi|189333152|dbj|BAG42222.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 183

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora
          DSM 43833]
 gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833]
          Length = 370

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R    L+Q ++  +    ++ I+++E G   ++   +  LA  LD P+   L 
Sbjct: 16 GERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELARLAQALDVPIGHFLH 75

Query: 83 P 83
          P
Sbjct: 76 P 76


>gi|294499262|ref|YP_003562962.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium QM
          B1551]
 gi|294349199|gb|ADE69528.1| Helix-turn-helix DNA-binding protein [Bacillus megaterium QM
          B1551]
          Length = 185

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R IR + + T  E+ +RTG ++  + ++E G++   +  M  +   L+ PL KL+
Sbjct: 10 VGNELRKIRTQREFTLDELADRTGVSKLTLGKIERGETNPTLGVMWKITTGLNIPLTKLV 69


>gi|229495100|ref|ZP_04388846.1| DNA-binding protein [Rhodococcus erythropolis SK121]
 gi|229318031|gb|EEN83906.1| DNA-binding protein [Rhodococcus erythropolis SK121]
          Length = 196

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+ A LT + +  +TG  +S++S++E G ST +I   + +A  LD  + +L 
Sbjct: 5  LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLF 60


>gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 201

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+  +TQ+E+      +++ +S+ E+G+   +ID++  ++      L +LL
Sbjct: 3  FHEKLQELRKQRGMTQEELATALYVSRTAVSKWESGRGYPSIDSLKAISGFFGVSLDQLL 62


>gi|228906150|ref|ZP_04070039.1| hypothetical protein bthur0013_3350 [Bacillus thuringiensis IBL
          200]
 gi|228853559|gb|EEM98327.1| hypothetical protein bthur0013_3350 [Bacillus thuringiensis IBL
          200]
          Length = 75

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R  RK+A  +Q+++  +    +++I  LE  +   +I  +  +   L+    +
Sbjct: 5  KAFGEVLRKHRKKANFSQEQLALQCNLDRTYIGLLERAQRQPSISTIFAICKVLNIAPHE 64

Query: 80 LLK 82
          L+K
Sbjct: 65 LIK 67


>gi|222150597|ref|YP_002559750.1| hypothetical protein MCCL_0347 [Macrococcus caseolyticus
          JCSC5402]
 gi|222119719|dbj|BAH17054.1| conserved hypothetical protein [Macrococcus caseolyticus
          JCSC5402]
          Length = 167

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R IRKE +LT K++   T  +  ++S+LET KS   +  + ++A  L+    +
Sbjct: 1  MSIGENIRKIRKERELTLKQVAELTDLSIPFLSQLETNKSDATMATIRLIADALEVHPSQ 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|115372718|ref|ZP_01460024.1| sigma-54 dependent DNA-binding response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823476|ref|YP_003955834.1| DigR protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370199|gb|EAU69128.1| sigma-54 dependent DNA-binding response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396548|gb|ADO74007.1| DigR protein [Stigmatella aurantiaca DW4/3-1]
          Length = 197

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +K+      +A L  R I     R+ RK  +LT K++  RTG + S +S++E  +S+ +I
Sbjct: 119 QKKGLSQDPEADL-HRAI-GRVIRDARKTQELTLKQLARRTGLSVSLLSQIERAESSASI 176

Query: 64  DNMIILAHTLDTPLWKLL 81
            ++  +A  L   + +L 
Sbjct: 177 SSLYKIASALQLRMGELF 194


>gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125]
 gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125]
          Length = 189

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              + IR +  +T  ++  +TG ++  + ++E G+S   +  +  +A  L   
Sbjct: 11 GQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESNPTVSTLWKIATGLHVS 64


>gi|224535292|ref|ZP_03675831.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224523100|gb|EEF92205.1| hypothetical protein BACCELL_00153 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 103

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +    R+ RK+ K+TQ+E+  + G A+S+I+ +E G++ I I +   +A  L   
Sbjct: 43 YGEILRDRRKQLKITQQELAEKVGTARSYIARVEKGETDIQISSFFRIARALGIE 97


>gi|126652627|ref|ZP_01724791.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. B14905]
 gi|126590618|gb|EAZ84735.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. B14905]
          Length = 248

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77
          +  F    +  R   K++ +E+  R G +  ++S+LE    +  +++ ++ +++ L   L
Sbjct: 3  KETFGEAIKEARIARKISLRELARRIGISHPYLSQLENNHNNNPSLEIIVKISNELGISL 62

Query: 78 WKLL 81
            L+
Sbjct: 63 QHLI 66


>gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 244

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           D    SD++ R         + +R E  +T   +   TG ++S +S LE+G    +++ +
Sbjct: 26  DPAPASDSVARTLNEVGPRLKRLRAERGITLAALAETTGISKSTLSRLESGGRRPSLELL 85

Query: 67  IILAHTLDTPLWKLL 81
           + ++     PL +L+
Sbjct: 86  LPISQAYQVPLDELV 100


>gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 179

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R   +LTQ E+  R    + +IS++E   ++ +I  ++ +   L   + K  
Sbjct: 4  GEKIRRLRILNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDILEALGIDVNKFF 62


>gi|150403019|ref|YP_001330313.1| helix-turn-helix domain-containing protein [Methanococcus
          maripaludis C7]
 gi|150034049|gb|ABR66162.1| helix-turn-helix domain protein [Methanococcus maripaludis C7]
          Length = 182

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+   + N TG ++S + ++E G+    I  ++ +++ L      L
Sbjct: 7  VISKNLKIIRKRKDLSLDALSNITGVSKSMLGQIERGEVNPTISTILKISNGLKVSFTSL 66

Query: 81 LK 82
          LK
Sbjct: 67 LK 68


>gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 181

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R    + +IS+LE   ++ +I  +  +       + +  
Sbjct: 4  GERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQEFF 62


>gi|88812246|ref|ZP_01127497.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231]
 gi|88790497|gb|EAR21613.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231]
          Length = 179

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T + +  +TG  +S++S++E G +T +I   + +A  L+  + +L 
Sbjct: 4  RLKLLRKKLGFTLEALAQQTGLTKSYLSKVERGLNTPSIAVALKVAEALNVQVEELF 60


>gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          15998]
 gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          11379]
 gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 199

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  R RD+P L   +           R +RK+  +T   +   TG + S +S LE+G   
Sbjct: 1  MKERDRDDPELESVLSG----VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRR 56

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +++ M+ +A   + PL  L+
Sbjct: 57 PSLELMLPIARAHEVPLDDLV 77


>gi|229175212|ref|ZP_04302728.1| Transcriptional regulator, Xre [Bacillus cereus MM3]
 gi|228608348|gb|EEK65654.1| Transcriptional regulator, Xre [Bacillus cereus MM3]
          Length = 190

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|169334175|ref|ZP_02861368.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258892|gb|EDS72858.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 219

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      IRKE  LTQ+E+ +    +++ +S+ E+G+   +ID++  ++      + +LL
Sbjct: 22 FNEKLVLIRKEKGLTQEELASLLFVSRTAVSKWESGRGYPSIDSLKEISRVFGVTIDELL 81


>gi|163796160|ref|ZP_02190122.1| transcriptional regulator, Cro/CI family protein [alpha
          proteobacterium BAL199]
 gi|159178619|gb|EDP63159.1| transcriptional regulator, Cro/CI family protein [alpha
          proteobacterium BAL199]
          Length = 195

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +R   +L+ +++  R G ++  + ++E  +S  NI  +  LA  L   +  L
Sbjct: 12 VIARNVALLRHGQRLSYEQLARRAGVSKGVVVQIEQARSNPNIATLCRLASALGVAVVDL 71

Query: 81 L 81
          L
Sbjct: 72 L 72


>gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158]
 gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158]
          Length = 189

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|23098799|ref|NP_692265.1| hypothetical protein OB1344 [Oceanobacillus iheyensis HTE831]
 gi|22777026|dbj|BAC13300.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 189

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  +     +  + +R   K TQ++I +  G ++S +S++E G++   I  +  ++  L 
Sbjct: 2  VPIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALK 61

Query: 75 TPLWKLL 81
           PL  LL
Sbjct: 62 VPLAWLL 68


>gi|88855827|ref|ZP_01130490.1| putative transcriptional regulator [marine actinobacterium
          PHSC20C1]
 gi|88815151|gb|EAR25010.1| putative transcriptional regulator [marine actinobacterium
          PHSC20C1]
          Length = 201

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + +             +N R+  KLT  ++    G ++  +  +E G +  ++  ++ L+
Sbjct: 1  MDEPTELLARTIGARVKNERQARKLTLDQLAENAGVSRRMVINVEQGAANPSVGTLLRLS 60

Query: 71 HTLDTPLWKLLKP 83
            L   L  L++P
Sbjct: 61 EALGVSLPALVEP 73


>gi|323486027|ref|ZP_08091358.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum
           WAL-14163]
 gi|323400594|gb|EGA92961.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum
           WAL-14163]
          Length = 143

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           ++  N   +RK+  +TQ+E+    G   +S IS +E GK   +I+N+  LA      + +
Sbjct: 72  VYALNLAYLRKKYGMTQQELVEIIGLKNKSSISLIENGKYEPSIENLEKLADFFGVTMDQ 131

Query: 80  LLK 82
           ++K
Sbjct: 132 IVK 134



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N + +R++   TQ E+    G  Q  IS  E G     I  ++ LA      L  
Sbjct: 1  MYLAENLKFLREQNGKTQGELAVLFGIEQKTISSWECGSRKPPIGTIVSLAKLYRVSLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612]
 gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612]
          Length = 99

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +R+E   TQ+++ ++ G  +  +S  ET     ++D +  +A TL+T    LL
Sbjct: 4  FGSKLRQLRQEKGYTQQQLADKLGITKGSVSAYETSAKYPSVDVLRKIAVTLNTSTDFLL 63


>gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 111

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKEA +T  E+ ++ G A+S++S LE   ++  +I  +  +A+ L   +  
Sbjct: 1  MIGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQTNPSIQFLEKVANVLGLSIDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|228910327|ref|ZP_04074143.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200]
 gi|228849279|gb|EEM94117.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200]
          Length = 194

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 18 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 77

Query: 80 LL 81
          L+
Sbjct: 78 LM 79


>gi|226307935|ref|YP_002767895.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226187052|dbj|BAH35156.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 196

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+ A LT + +  +TG  +S++S++E G ST +I   + +A  LD  + +L 
Sbjct: 5  LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLF 60


>gi|210634337|ref|ZP_03298073.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM
          13279]
 gi|210158864|gb|EEA89835.1| hypothetical protein COLSTE_01995 [Collinsella stercoris DSM
          13279]
          Length = 68

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E +   N+ R  RKE  L+Q ++   TG +++ IS +ETG+        ++L   LD 
Sbjct: 1  MKESLTLKNSLRAARKERGLSQAQLAEMTGVSRNTISSIETGQFNPTAKLALVLCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|218234511|ref|YP_002369300.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228923247|ref|ZP_04086537.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|218162468|gb|ACK62460.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228836453|gb|EEM81804.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 190

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|206969718|ref|ZP_03230672.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|206735406|gb|EDZ52574.1| DNA-binding protein [Bacillus cereus AH1134]
          Length = 190

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|148272654|ref|YP_001222215.1| Cro/CI family transcriptional regulator [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
 gi|147830584|emb|CAN01520.1| putative transcriptional regulator, Cro/CI family [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 475

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++     R+ RK A LT + +  R G   S +S +E G+    +  +  +A  L   +
Sbjct: 2  DQLVIGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALGVDV 61

Query: 78 WKLL 81
            LL
Sbjct: 62 THLL 65


>gi|56964628|ref|YP_176359.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16]
 gi|56910871|dbj|BAD65398.1| SOS-response transcriptional repressor [Bacillus clausii KSM-K16]
          Length = 209

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N    R     +Q ++      + + IS+ E GK + +++ +  +A  LDT + 
Sbjct: 5  KTLLAENLMKARIRKGYSQTDLAEILNVSSATISQYEKGKRSPDVEKLHTIAKVLDTTIP 64

Query: 79 KLL 81
          +L+
Sbjct: 65 ELI 67


>gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus
          J-10-fl]
 gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus
          J-10-fl]
 gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl]
          Length = 211

 Score = 55.0 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++ +L+ + +   +G A + +S +E G+++ ++  +  LA  L  P+    
Sbjct: 19 VGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPVSTFF 78

Query: 82 KP 83
           P
Sbjct: 79 TP 80


>gi|309388947|gb|ADO76827.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM
          2228]
          Length = 116

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK   LTQ+ +  +     ++I ++E G+   ++ ++I +A  L+  + KLL
Sbjct: 14 RKLNDLTQETLGEKADLHYTYIGQVERGEKEPSLKSLINIADALEIGIDKLL 65


>gi|300723214|ref|YP_003712514.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629731|emb|CBJ90337.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
          Length = 180

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +RK+  LT   +  +TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 5  LKILRKKLGLTLDSLAEKTGMTKSYLSKVERGLSKPSIATALKLSIALNVSVEELF 60


>gi|296504980|ref|YP_003666680.1| transcriptional regulator [Bacillus thuringiensis BMB171]
 gi|296326032|gb|ADH08960.1| transcriptional regulator [Bacillus thuringiensis BMB171]
          Length = 190

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGEANPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium]
 gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium]
          Length = 96

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  ++Q+ + +  G  +S + ++E G+    +  +  +A  LD     L+
Sbjct: 25 FGAAVRALRIERGISQESLAHLAGIERSHMGKVERGEHMPTLAVIFKIARALDCSTAVLM 84


>gi|255305199|ref|ZP_05349371.1| putative phage regulatory protein [Clostridium difficile ATCC
          43255]
          Length = 67

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +N +  R+  KLTQK++      ++ +IS++E G           +A  L   + +L
Sbjct: 1  MFKSNLKYYRELNKLTQKQLALEVNVSKEYISQIERGIKNPGFFTAQKIAKILGITIDEL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|254439667|ref|ZP_05053161.1| Cupin domain protein [Octadecabacter antarcticus 307]
 gi|198255113|gb|EDY79427.1| Cupin domain protein [Octadecabacter antarcticus 307]
          Length = 189

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E      + R +RK   LT   +    G +  W+S++E  KS  +I ++  +A  LD 
Sbjct: 6  PPESCTLGADIRALRKARGLTLSGLGETLGRSVGWLSQVERDKSEPSISDLRYIASALDV 65

Query: 76 PLWKLLK 82
           +  L +
Sbjct: 66 SVSSLFR 72


>gi|295105300|emb|CBL02844.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 118

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   +TQ ++  ++  +  +I+ +E GK   + D +  + H L   L  ++
Sbjct: 9  LGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSII 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL
          200]
 gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL
          200]
          Length = 146

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|221066672|ref|ZP_03542777.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
 gi|220711695|gb|EED67063.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
          Length = 97

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
                  + E + F    R  RK    +Q+   +  G  +S+I  +E G+  + + N++
Sbjct: 4  AKESLKNKVPELVRFGEAVRARRKACGYSQEAFGDACGIDRSYIGGIERGEHNLALINIL 63

Query: 68 ILAHTLDTPLWKLLK 82
           +  TL+    +  +
Sbjct: 64 KIIATLNLQPSEFFE 78


>gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 209

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   +TQKE  +  G  Q ++S +E GK  ++   +I L H+   
Sbjct: 11 GLRIKEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIALCHSYGI 63


>gi|329941544|ref|ZP_08290809.1| transcriptional regulatory protein [Streptomyces
          griseoaurantiacus M045]
 gi|329299261|gb|EGG43161.1| transcriptional regulatory protein [Streptomyces
          griseoaurantiacus M045]
          Length = 190

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N R  R E   T   +  R G ++  + ++E  ++  ++  ++ +   L   L  
Sbjct: 9  QSLARNVRRWRAERGFTLDALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSLPT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 241

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  LDT L +L
Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|255320501|ref|ZP_05361682.1| transcriptional regulator, XRE family [Acinetobacter
          radioresistens SK82]
 gi|262378393|ref|ZP_06071550.1| transcriptional regulator [Acinetobacter radioresistens SH164]
 gi|255302473|gb|EET81709.1| transcriptional regulator, XRE family [Acinetobacter
          radioresistens SK82]
 gi|262299678|gb|EEY87590.1| transcriptional regulator [Acinetobacter radioresistens SH164]
          Length = 182

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     +  R++A L+  E+  R G A+S +S+LE  +   +++ +  L   LD P  K
Sbjct: 6  EIVAKGLQRERQKAGLSLTEVARRAGIAKSTLSQLEAAQGNPSLETLWALCVALDIPFAK 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|228938260|ref|ZP_04100874.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228971138|ref|ZP_04131770.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228977747|ref|ZP_04138132.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis
          Bt407]
 gi|228781955|gb|EEM30148.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis
          Bt407]
 gi|228788564|gb|EEM36511.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228821396|gb|EEM67407.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326938767|gb|AEA14663.1| transcriptional repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676]
 gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185]
 gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29]
 gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28]
 gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3]
 gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876]
 gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans
          DSM 16841]
 gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans
          DSM 16841]
          Length = 150

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK  +LTQ+++  +   ++  IS+ E+G+    ++ ++ L+   D  +  LL
Sbjct: 3  FAEKLITLRKSRELTQEQLAEQLNVSRQSISKWESGQVIPEVEKIVELSKVFDVTVDYLL 62

Query: 82 KP 83
          KP
Sbjct: 63 KP 64


>gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264]
 gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134]
 gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W]
 gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134]
 gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|160945560|ref|ZP_02092786.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443291|gb|EDP20296.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium
          prausnitzii M21/2]
          Length = 120

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   +TQ ++  ++  +  +I+ +E GK   + D +  + H L   L  ++
Sbjct: 11 LGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSII 70

Query: 82 KP 83
           P
Sbjct: 71 NP 72


>gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579]
 gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15]
 gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4]
 gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24]
 gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579]
 gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24]
 gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4]
 gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15]
          Length = 149

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|57641201|ref|YP_183679.1| transcription regulator [Thermococcus kodakarensis KOD1]
 gi|57159525|dbj|BAD85455.1| predicted transcription regulator, containing CBS domains
          [Thermococcus kodakarensis KOD1]
          Length = 192

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          R I     R IRKE  +TQ+E+  + G  Q++I++LE GK    +  +  +   L
Sbjct: 6  RPIDPREIRKIRKELGITQEELAKKAGVTQAYIAKLEAGKVDPRLSTLNRILQAL 60


>gi|271964933|ref|YP_003339129.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270508108|gb|ACZ86386.1| transcriptional regulator protein-like protein [Streptosporangium
          roseum DSM 43021]
          Length = 489

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++RK+  LT  ++  R   A S +S LE GK    +  +  LA  L+ P+ +LL
Sbjct: 21 FGQRLRHLRKQRGLTLSDLGERVSRAPSQLSLLENGKREPKLSLLKSLATALNVPVEELL 80

Query: 82 K 82
          +
Sbjct: 81 R 81


>gi|239939715|ref|ZP_04691652.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          15998]
 gi|239986200|ref|ZP_04706864.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          11379]
 gi|291443141|ref|ZP_06582531.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
          15998]
 gi|291346088|gb|EFE72992.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
          15998]
          Length = 190

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R+G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVAITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|194709160|pdb|3CLC|A Chain A, Crystal Structure Of The Restriction-Modification
          Controller Protein C.Esp1396i Tetramer In Complex With
          Its Natural 35 Base-Pair Operator
 gi|194709161|pdb|3CLC|B Chain B, Crystal Structure Of The Restriction-Modification
          Controller Protein C.Esp1396i Tetramer In Complex With
          Its Natural 35 Base-Pair Operator
 gi|194709162|pdb|3CLC|C Chain C, Crystal Structure Of The Restriction-Modification
          Controller Protein C.Esp1396i Tetramer In Complex With
          Its Natural 35 Base-Pair Operator
 gi|194709163|pdb|3CLC|D Chain D, Crystal Structure Of The Restriction-Modification
          Controller Protein C.Esp1396i Tetramer In Complex With
          Its Natural 35 Base-Pair Operator
          Length = 82

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + IR E  +TQ+++  ++   +++IS +E     + I ++ ++   L+  
Sbjct: 16 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 66


>gi|218895211|ref|YP_002443622.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228898828|ref|ZP_04063111.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222]
 gi|228905871|ref|ZP_04069769.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200]
 gi|228937377|ref|ZP_04100024.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228963175|ref|ZP_04124345.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|218540820|gb|ACK93214.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228796560|gb|EEM43998.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228822335|gb|EEM68316.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228853811|gb|EEM98570.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200]
 gi|228860853|gb|EEN05230.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222]
 gi|326937867|gb|AEA13763.1| XRE family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 67

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L+  +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 DELM 65


>gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus
          maricopensis DSM 21211]
 gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM
          21211]
          Length = 188

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R+  + +Q ++  R G A++ IS++E G  +     ++ LA   D  L  L
Sbjct: 11 LIARRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLATAFDLTLAGL 70

Query: 81 L 81
          L
Sbjct: 71 L 71


>gi|221065949|ref|ZP_03542054.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
 gi|220710972|gb|EED66340.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
          Length = 298

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
             H +      R  F  + R+ R+  +L+Q+ +      +   +S +ETG++  + + +
Sbjct: 20 SSSHAAHPPPGARAPFGEHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMV 79

Query: 67 IILAHTLDTPLWK 79
          + LA  L  PL +
Sbjct: 80 LRLAERLSVPLRE 92


>gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family
          [Cyanothece sp. PCC 7822]
 gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family
          [Cyanothece sp. PCC 7822]
          Length = 377

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + IR    L+Q+++    G ++  IS +E+G+   +    + LA  L   +  L 
Sbjct: 9  NNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVEDLF 66


>gi|206972608|ref|ZP_03233551.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|206732510|gb|EDZ49689.1| DNA-binding protein [Bacillus cereus AH1134]
          Length = 67

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L+  +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 EELM 65


>gi|160901221|ref|YP_001566803.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366805|gb|ABX38418.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 90

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+    +Q+ +   +   +S++ E+E G+   ++  +  LA +L      L+
Sbjct: 9  FGIAVRQAREAHGWSQERLAEHSDLNRSYVGEIERGRVIASLLTVEKLAVSLGVQPSALV 68


>gi|30022584|ref|NP_834215.1| transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|29898142|gb|AAP11416.1| Transcriptional regulator [Bacillus cereus ATCC 14579]
          Length = 190

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+ ++TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|84514580|ref|ZP_01001944.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
 gi|84511631|gb|EAQ08084.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53]
          Length = 189

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + R +RK   LT   +  R G +  W+S++E   S+ ++D++  LA  LD     LL
Sbjct: 14 GADLRALRKARGLTLTALAERVGRSVGWLSQVERDLSSASVDDIAALARVLDVATSSLL 72


>gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans
          DSM 11109]
 gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans
          DSM 11109]
          Length = 180

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+   LTQ+E+ NR    + +IS+LE  +++ +I  +  +   L   L    +
Sbjct: 4  GEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQTSPSIATLKDILDVLGVSLADFFR 63


>gi|312883075|ref|ZP_07742806.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309369235|gb|EFP96756.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 506

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPENAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDTPL 77
           + ++A       
Sbjct: 64 MLEVIADVFQKEP 76


>gi|254452205|ref|ZP_05065642.1| DNA-binding protein [Octadecabacter antarcticus 238]
 gi|198266611|gb|EDY90881.1| DNA-binding protein [Octadecabacter antarcticus 238]
          Length = 215

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R++ ++T  ++   TG +   +S++E G ++ ++  +  LAH L  PL    +
Sbjct: 30 GREVRAFRRKQEITVADLSATTGLSIGMLSKIENGITSPSLTTLQTLAHALAVPLTSFFR 89


>gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia
          ubonensis Bu]
          Length = 183

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|309804464|ref|ZP_07698531.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|309809826|ref|ZP_07703678.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
          2503V10-D]
 gi|312873153|ref|ZP_07733212.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|312873404|ref|ZP_07733455.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
 gi|325911527|ref|ZP_08173936.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
 gi|308166217|gb|EFO68433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|308169868|gb|EFO71909.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
          2503V10-D]
 gi|311091088|gb|EFQ49481.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
 gi|311091386|gb|EFQ49771.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|325476657|gb|EGC79814.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
          Length = 210

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|259501148|ref|ZP_05744050.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335]
 gi|302190406|ref|ZP_07266660.1| DNA-binding protein [Lactobacillus iners AB-1]
 gi|309804359|ref|ZP_07698435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|312871026|ref|ZP_07731129.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|325913257|ref|ZP_08175625.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
 gi|259167842|gb|EEW52337.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335]
 gi|308163571|gb|EFO65842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|311093521|gb|EFQ51862.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|325477360|gb|EGC80504.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
          Length = 210

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|239623815|ref|ZP_04666846.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
 gi|239521846|gb|EEQ61712.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
          Length = 186

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R+  KLT       TG ++S ++++E G     I  +  +A+        L+
Sbjct: 9  VGRNIRRLREAKKLTLDGAAAATGVSRSMLAQIEKGDVNPTISVLWKIANGYKVSFTSLV 68

Query: 82 K 82
          +
Sbjct: 69 E 69


>gi|218897381|ref|YP_002445792.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228901027|ref|ZP_04065238.1| hypothetical protein bthur0014_22270 [Bacillus thuringiensis IBL
          4222]
 gi|228965407|ref|ZP_04126494.1| hypothetical protein bthur0004_22380 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|218544800|gb|ACK97194.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228794238|gb|EEM41755.1| hypothetical protein bthur0004_22380 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228858624|gb|EEN03073.1| hypothetical protein bthur0014_22270 [Bacillus thuringiensis IBL
          4222]
          Length = 185

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|75758481|ref|ZP_00738602.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228904936|ref|ZP_04068988.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL
          4222]
 gi|74494008|gb|EAO57103.1| Transcriptional regulator, pbsX family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228854678|gb|EEM99284.1| hypothetical protein bthur0014_60580 [Bacillus thuringiensis IBL
          4222]
          Length = 65

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L T +  + 
Sbjct: 2  NKIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59


>gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241]
 gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          4342]
 gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293]
 gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241]
 gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293]
 gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          4342]
 gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 107

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG]
          Length = 243

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  LDT L +L
Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|227505364|ref|ZP_03935413.1| conserved hypothetical protein [Corynebacterium striatum ATCC
          6940]
 gi|227198066|gb|EEI78114.1| conserved hypothetical protein [Corynebacterium striatum ATCC
          6940]
          Length = 116

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG------KSTINIDNMIILAHTLDT 75
          F +  R  R+   ++QK +   +G ++S IS LE        ++   +  +  LA+ L+ 
Sbjct: 15 FASRLRETRERRGMSQKALAEISGVSRSQISNLERTDKALNLRADPQLSTLFKLAYALEV 74

Query: 76 PLWKLL 81
          P   LL
Sbjct: 75 PPSLLL 80


>gi|225867621|ref|YP_002743569.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus]
 gi|225700897|emb|CAW97557.1| putative DNA-binding protein [Streptococcus equi subsp.
          zooepidemicus]
          Length = 120

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R E +L+Q  +  +   ++  IS+ E G +T +++N++ LA  L+  L +L+
Sbjct: 4  FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELV 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|295837564|ref|ZP_06824497.1| DNA-binding protein [Streptomyces sp. SPB74]
 gi|197698354|gb|EDY45287.1| DNA-binding protein [Streptomyces sp. SPB74]
          Length = 280

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             R       R +R EA L  K++  R G+ +S IS LETGK T  ID++   A   D
Sbjct: 7  QTGREALGARLRELRTEAGLQGKDLAARLGWQRSKISRLETGKQTPTIDDLAAWAQATD 65


>gi|159038038|ref|YP_001537291.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157916873|gb|ABV98300.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 175

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           ++   +R  A ++  ++    G +++ +  +E G     +  +  LA  L  PL +LL+
Sbjct: 2  GSHVHRLRTAAGISLADLAAAGGISRTTLHGIEQGHGNPTLSTLWALATALRVPLGELLE 61


>gi|124010434|ref|ZP_01695075.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123983471|gb|EAY23951.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 504

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R+IF    + +R E KL+  E+   TG + S+++E+E GK     + +  LA TL+ 
Sbjct: 9  RLIFGVKVKQLRTEKKLSLAEVSKATGISISYLNEIEKGKKYPKPNKIATLAQTLEV 65


>gi|146308486|ref|YP_001188951.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576687|gb|ABP86219.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp]
          Length = 197

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            LR         +  R+  +L   ++    G +Q  +S++E  + + ++D +  L   L
Sbjct: 7  PRLRLEQYLGMQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDTLSRLCDVL 66

Query: 74 DTPLWKLL 81
            P+ KL 
Sbjct: 67 GMPMSKLF 74


>gi|309779373|ref|ZP_07674135.1| DNA binding protein [Ralstonia sp. 5_7_47FAA]
 gi|308921931|gb|EFP67566.1| DNA binding protein [Ralstonia sp. 5_7_47FAA]
          Length = 198

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+  KL+  E+  R G ++S +S++E   +   +  +  LA  L   L   L
Sbjct: 17 VGAKLQTLRQARKLSLDELSRRAGVSKSMLSQVERNLANPTVAVLWRLATALGVGLADFL 76

Query: 82 KP 83
           P
Sbjct: 77 SP 78


>gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 195

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + +   R I     R++R++   T  ++   TG ++  + ++E G+S   +  +  +A  
Sbjct: 3  EPVDFSRRI-GQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIATG 61

Query: 73 LDTPLWKLLK 82
          L  P    L+
Sbjct: 62 LGVPFSTFLR 71


>gi|302517812|ref|ZP_07270154.1| transcriptional regulatory protein [Streptomyces sp. SPB78]
 gi|318061036|ref|ZP_07979757.1| transcriptional regulatory protein [Streptomyces sp. SA3_actG]
 gi|302426707|gb|EFK98522.1| transcriptional regulatory protein [Streptomyces sp. SPB78]
          Length = 193

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R+ R E   T   +  R G ++  I ++E  ++  ++  ++ +A  L   +  LL
Sbjct: 11 LARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPTLL 70


>gi|228993234|ref|ZP_04153155.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM
          12442]
 gi|228766560|gb|EEM15202.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM
          12442]
          Length = 190

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|228999282|ref|ZP_04158862.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17]
 gi|229006837|ref|ZP_04164470.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4]
 gi|228754459|gb|EEM03871.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4]
 gi|228760479|gb|EEM09445.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17]
          Length = 190

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  PL +
Sbjct: 14 QQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVIWKITKGLSIPLSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1]
 gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1]
          Length = 189

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662]
 gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662]
          Length = 323

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 39/69 (56%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              E  +F    +++R++AK++Q+++  +   ++  +++ ETG    +I+N+  +A   
Sbjct: 15 KTEEEHKMFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLF 74

Query: 74 DTPLWKLLK 82
          D  + +LL+
Sbjct: 75 DISIDELLE 83


>gi|119512426|ref|ZP_01631508.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414]
 gi|119462892|gb|EAW43847.1| hypothetical protein N9414_13365 [Nodularia spumigena CCY9414]
          Length = 68

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           I     +  R E   +Q+ +   TG  +++IS+LE G  + ++  +  + H+L  
Sbjct: 12 QILGLELQRHRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITHSLGI 67


>gi|186470704|ref|YP_001862022.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184197013|gb|ACC74976.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 213

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R    LT  ++  ++G ++S +S++E G+ + ++D+++ LA  L   +  L 
Sbjct: 26 LGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIENGQVSTSLDSIVSLARALGISISALF 85

Query: 82 K 82
          K
Sbjct: 86 K 86


>gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M]
 gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2]
 gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2]
 gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M]
          Length = 189

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|182412902|ref|YP_001817968.1| XRE family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840116|gb|ACB74368.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1]
          Length = 83

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          + +P     I   + +        RK+A L+Q E+  R G  ++++  +E G+ +I +  
Sbjct: 4  KKDPRTPAQIKLAKQL-GAAIAEARKKAGLSQDELAYRCGLHRAYMGFVEQGRYSITVAT 62

Query: 66 MIILAHTLDTPLWKLL 81
          ++ +   LD    ++L
Sbjct: 63 LVQVCSELDAKPSEIL 78


>gi|156935962|ref|YP_001439878.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156534216|gb|ABU79042.1| hypothetical protein ESA_03856 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 182

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R  A L+  E+  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  VIAQSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 66

Query: 81 LKP 83
          ++P
Sbjct: 67 MEP 69


>gi|86738850|ref|YP_479250.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86565712|gb|ABD09521.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 111

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           I      F       R+ A LTQ+++  R+G ++  I+ +E G+  +    ++ LAH +
Sbjct: 2  TIEPAYQEFGERLAQTRRHASLTQRDVAERSGISRPTIANIEKGRQRLLYHQLLDLAHAI 61

Query: 74 DTPLWKLL 81
                LL
Sbjct: 62 GVDPRDLL 69


>gi|88706762|ref|ZP_01104463.1| DNA-binding protein [Congregibacter litoralis KT71]
 gi|88698943|gb|EAQ96061.1| DNA-binding protein [Congregibacter litoralis KT71]
          Length = 186

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +R+   +T +++   +G ++S +S++E GK+   +     +A T    + +L
Sbjct: 8  LLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERGKANPTLAVTQRIAQTFGISIGEL 67

Query: 81 L 81
          +
Sbjct: 68 V 68


>gi|302672043|ref|YP_003832003.1| AbrB family transcriptional regulator [Butyrivibrio
          proteoclasticus B316]
 gi|302396516|gb|ADL35421.1| transcriptional regulator AbrB family [Butyrivibrio
          proteoclasticus B316]
          Length = 139

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +N   +RK  ++TQ+++  + G  +  +++ E+G+S  ++D    LA      L  L
Sbjct: 1  MFKDNLVQMRKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADIFGVSLDDL 60


>gi|78186553|ref|YP_374596.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78166455|gb|ABB23553.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 213

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           L+Q+    + GF +++I  +E G  ++ + +    A  L   + +LL
Sbjct: 22 GLSQEAFAEKAGFHRTYIGTVERGAQSVTLQSYNKFARALGLNICELL 69


>gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579]
 gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134]
 gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676]
 gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185]
 gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2]
 gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-Cer4]
 gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST24]
 gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W]
 gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171]
 gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579]
 gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134]
 gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W]
 gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST24]
 gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-Cer4]
 gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2]
 gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185]
 gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676]
 gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171]
          Length = 107

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|292491245|ref|YP_003526684.1| hypothetical protein Nhal_1128 [Nitrosococcus halophilus Nc4]
 gi|291579840|gb|ADE14297.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 128

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ER++   N  +  R    LTQ ++  + G +QS+++ +E G+    +  +  +A  L+ 
Sbjct: 55  VERLLEGENPIKVWRTYRGLTQHDLAEQAGLSQSYLAMMEKGEREGTVKALKRIAKALNV 114

Query: 76  PLWKLL 81
            +  L+
Sbjct: 115 DIDDLV 120


>gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 129

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKEA LTQKE+ ++ G ++  I   E G+   + + +  L+      +  LL
Sbjct: 3  FAKRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQRDPDTETLQKLSDIFGVSVDYLL 62


>gi|228918784|ref|ZP_04082182.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228840856|gb|EEM86100.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 65

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N    +RKE  ++Q+ +    G ++++ISE+E  K   N+   I +A +L T +  +  P
Sbjct: 2  NKIAELRKEKLMSQETLAGLVGLSRTYISEIENNKKQPNVKLAIKIAESLGTNVESIFGP 61


>gi|229133280|ref|ZP_04262110.1| hypothetical protein bcere0014_21990 [Bacillus cereus BDRD-ST196]
 gi|228650191|gb|EEL06196.1| hypothetical protein bcere0014_21990 [Bacillus cereus BDRD-ST196]
          Length = 185

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803]
 gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803]
          Length = 277

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  IS+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|297195701|ref|ZP_06913099.1| transcriptional regulatory protein [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|197718957|gb|EDY62865.1| transcriptional regulatory protein [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 201

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N ++ R E   T   +  R+G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 20 QSLARNLKHWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 79

Query: 80 LL 81
          LL
Sbjct: 80 LL 81


>gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 183

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|124008859|ref|ZP_01693546.1| repressor [Microscilla marina ATCC 23134]
 gi|123985547|gb|EAY25439.1| repressor [Microscilla marina ATCC 23134]
          Length = 120

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++IR +  L+QKE+    G  +   S  E GK+  ++  +  +A  L+  L  L 
Sbjct: 3  FAKKLKDIRSKKSLSQKEVALSVGIDRGQYSRFENGKAEPSLATIKKIAQALNVKLSDLF 62


>gi|163940218|ref|YP_001645102.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229167265|ref|ZP_04295006.1| hypothetical protein bcere0007_22290 [Bacillus cereus AH621]
 gi|163862415|gb|ABY43474.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228616303|gb|EEK73387.1| hypothetical protein bcere0007_22290 [Bacillus cereus AH621]
          Length = 185

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNIKAIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ambifaria AMMD]
 gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 183

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 176

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N + +RK+  ++Q+E+      ++  +S+ E G     ++ ++IL+  L+  L  
Sbjct: 1  MAFADNLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIGYPEVEKLLILSSQLNVSLDS 60

Query: 80 LL 81
          L+
Sbjct: 61 LM 62


>gi|296118143|ref|ZP_06836724.1| putative Helix-turn-helix domain protein [Corynebacterium
          ammoniagenes DSM 20306]
 gi|295968701|gb|EFG81945.1| putative Helix-turn-helix domain protein [Corynebacterium
          ammoniagenes DSM 20306]
          Length = 192

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I     R +R     +   +  R   + S +S +ETG+  I++D ++ +A  L T L +
Sbjct: 8  LIVRQRIRGLRLARNWSLDTLARRCEISTSTLSRIETGRQRISLDLLVTIAQALGTSLDQ 67

Query: 80 LLKP 83
          L++P
Sbjct: 68 LVEP 71


>gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 107

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229150628|ref|ZP_04278842.1| hypothetical protein bcere0011_21790 [Bacillus cereus m1550]
 gi|228632715|gb|EEK89330.1| hypothetical protein bcere0011_21790 [Bacillus cereus m1550]
          Length = 185

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N ++IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKSIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|291543303|emb|CBL16412.1| Helix-turn-helix [Ruminococcus sp. 18P13]
          Length = 120

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R +  +TQ E+  R   + +++S +ET     ++D ++ +A+ L+     L
Sbjct: 7  LLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKFCSLDTLVRVANELNVSTDDL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|288959830|ref|YP_003450170.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912138|dbj|BAI73626.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 210

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + R +R    L+ + +   +G +++ + ++E G+S   I  +  +A  LD  L  L
Sbjct: 29 ILGRHLRRLRTRQGLSLERLARLSGVSRAMLGQIELGRSAPTITVLWKIARALDVTLASL 88

Query: 81 LK 82
           +
Sbjct: 89 TR 90


>gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758]
 gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758]
          Length = 197

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++ +  R +RK+  LT KE+   TG+    IS++E    + ++  +  +A  LD
Sbjct: 1  MYGSRIREMRKKRGLTLKEVAEATGYTIGHISQIERDLKSPSLVALRKIAVCLD 54


>gi|317501888|ref|ZP_07960073.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896778|gb|EFV18864.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 69

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N  + +RKE KL+Q E+    G +++ IS +ETG+        ++L   LD   
Sbjct: 3  EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
          CI]
          Length = 107

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|296122391|ref|YP_003630169.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
 gi|296014731|gb|ADG67970.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
          Length = 82

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F  NFR  RK   LTQK++  + G   + +S +E+ +S+ + + + + A   +    
Sbjct: 7  RTVFARNFRLQRKARGLTQKQLAEKIGVTAAQVSHIESQRSSPSFEVIFMSARVFNLSPA 66

Query: 79 KLLKP 83
           LL P
Sbjct: 67 ALLIP 71


>gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187]
 gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1]
 gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST26]
 gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3]
 gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187]
 gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1]
 gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3]
 gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          BDRD-ST26]
 gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 107

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|163792697|ref|ZP_02186674.1| transcriptional regulator, Cro/CI family protein [alpha
          proteobacterium BAL199]
 gi|159182402|gb|EDP66911.1| transcriptional regulator, Cro/CI family protein [alpha
          proteobacterium BAL199]
          Length = 192

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +     R +RK   +T + +   TG  + ++S++ETGK    I  +  +A  + 
Sbjct: 3  ELIGPRLRQLRKRRGVTLETLAAGTGLTKGYLSKIETGKMVPPIATLSRIAQAIG 57


>gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 114

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 8  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|219666716|ref|YP_002457151.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219536976|gb|ACL18715.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 110

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWK 79
          F N  +N+RK+ K+TQ+++  R G   ++IS++ETG   +  +   +I +A  L T   +
Sbjct: 4  FGNTLKNLRKQHKITQRDLAERVGVDFTYISKIETGAIANPPSEKTIIQIAKVLGTNADE 63

Query: 80 LL 81
          L+
Sbjct: 64 LI 65


>gi|296120086|ref|ZP_06838640.1| transcriptional regulator [Corynebacterium ammoniagenes DSM
          20306]
 gi|295967240|gb|EFG80511.1| transcriptional regulator [Corynebacterium ammoniagenes DSM
          20306]
          Length = 182

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75
          F  N R IR+   +TQ+ +    G +++ +  LE  ++         +  +  LA  L+ 
Sbjct: 17 FSQNLRKIRRSRGVTQQALAEIAGLSRTQVCNLERNENNSGTSADPALSTVYKLALALEV 76

Query: 76 PLWKLL 81
          P   LL
Sbjct: 77 PPVLLL 82


>gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC
          13047]
          Length = 256

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I R +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ LA+ L 
Sbjct: 20 IARMKTTLAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKANQTT-KLVELANALK 78

Query: 75 TPLWKL 80
               L
Sbjct: 79 VKPEWL 84


>gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM
          1552]
 gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM
          1552]
          Length = 212

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    + +  +   LD    +LL
Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70


>gi|328948641|ref|YP_004365978.1| hypothetical protein Tresu_1790 [Treponema succinifaciens DSM
          2489]
 gi|328448965|gb|AEB14681.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 105

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F++N +  RKE  +TQ+++        S+I ++ET K   ++  +  +A +L    ++L 
Sbjct: 7  FISNLKRFRKEQNMTQEKLAELCKTDTSYIGQIETKKRFPSLSFVERIAASLKVEPYRLY 66

Query: 82 KP 83
           P
Sbjct: 67 MP 68


>gi|295136243|ref|YP_003586919.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
          SM-A87]
 gi|294984258|gb|ADF54723.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda
          SM-A87]
          Length = 79

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +NF  IRK   L+ + +  +     + ++++E GK  I +  +  LA  L+    +L 
Sbjct: 14 FGSNFGKIRKMKNLSFRALSQKCDLDYADLNKIEKGKRNITLTTIAELARGLNVHPKELF 73


>gi|269794016|ref|YP_003313471.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269096201|gb|ACZ20637.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
          Length = 489

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                 + +      R+ R  A LT +++  RTG   S +S +E G     +  +  +A
Sbjct: 5  SERTTSTDLLTLGRRVRHFRTGAGLTLEDLAERTGVDTSQLSRIENGLREPRLSLLDAVA 64

Query: 71 HTLDTPLWKLL 81
            L  P+  LL
Sbjct: 65 GALGVPVATLL 75


>gi|158522721|ref|YP_001530591.1| XRE family transcriptional regulator [Desulfococcus oleovorans
          Hxd3]
 gi|158511547|gb|ABW68514.1| transcriptional regulator, XRE family [Desulfococcus oleovorans
          Hxd3]
          Length = 112

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       + +R    L Q++I  + GF   +   LE G+   +++ +  L    D  L 
Sbjct: 7  KKRLGIRLKELRLAKNLKQEDIEKKHGFNYRYYGRLERGEINPSLETLNKLCEIFDVSLA 66

Query: 79 KLLK 82
           L +
Sbjct: 67 ALFQ 70


>gi|150399854|ref|YP_001323621.1| XRE family transcriptional regulator [Methanococcus vannielii SB]
 gi|150012557|gb|ABR55009.1| putative transcriptional regulator, XRE family [Methanococcus
          vannielii SB]
          Length = 183

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRKE  L+   +   TG ++S + ++E  +    I  ++ +A+ L      L
Sbjct: 7  VISKNLKKIRKEKGLSLDALSTLTGVSKSMLGQIEREEVNPTISTILKIANGLKVSFTSL 66

Query: 81 LK 82
          +K
Sbjct: 67 MK 68


>gi|118472940|ref|YP_888581.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174227|gb|ABK75123.1| regulatory protein [Mycobacterium smegmatis str. MC2 155]
          Length = 192

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H  DA++R+R       R +R E  LT +++ +R     S +S LE+GK  + +D++  L
Sbjct: 8  HDVDALVRQR------LRELRTERGLTLEDVASRAQIDVSTLSRLESGKRRLALDHLPRL 61

Query: 70 AHTLDTPLWKLLK 82
          A  L      LL+
Sbjct: 62 ATALSVTTDDLLR 74


>gi|30018346|ref|NP_829977.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|218235456|ref|YP_002364925.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228919025|ref|ZP_04082405.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228956516|ref|ZP_04118313.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|229107761|ref|ZP_04237398.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15]
 gi|229125592|ref|ZP_04254625.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4]
 gi|229142881|ref|ZP_04271323.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24]
 gi|229148484|ref|ZP_04276741.1| Transcriptional regulator Xre [Bacillus cereus m1550]
 gi|296500908|ref|YP_003662608.1| XRE family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|29893886|gb|AAP07178.1| Transcriptional regulator, Xre family [Bacillus cereus ATCC
          14579]
 gi|218163413|gb|ACK63405.1| DNA-binding protein [Bacillus cereus B4264]
 gi|228635026|gb|EEK91598.1| Transcriptional regulator Xre [Bacillus cereus m1550]
 gi|228640593|gb|EEK96981.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24]
 gi|228657909|gb|EEL13714.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4]
 gi|228675734|gb|EEL30941.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15]
 gi|228803206|gb|EEM50027.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228840674|gb|EEM85935.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|296321960|gb|ADH04888.1| XRE family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 67

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L+  +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 EELM 65


>gi|312794245|ref|YP_004027168.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181385|gb|ADQ41555.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 129

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 10 HLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          H +D  L    +F      + +R+   L+  ++       QS +S +E+G+ +  +D + 
Sbjct: 5  HNTDTDLGSDFMFDVGRRVKELRELRGLSMTKLSKIARVGQSTLSYIESGRQSPTVDVLE 64

Query: 68 ILAHTLDTPLWKLLKP 83
           +   L   L +   P
Sbjct: 65 RICSALGITLAEFFSP 80


>gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 199

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + IR +  ++   +   TG ++S +S LETG+   +++ ++ +A     PL +L+
Sbjct: 14 VGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQRRPSLELLLPIAQAHQVPLDELV 73


>gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          Rock3-29]
 gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          Rock3-29]
          Length = 114

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    + +RK   LTQ E+      +QS I   ETG+   +I  +  +A   +  L  L
Sbjct: 3  IFGQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQPDIQTLASIASFFNVSLDVL 62

Query: 81 L 81
          +
Sbjct: 63 V 63


>gi|167760938|ref|ZP_02433065.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC
          35704]
 gi|167661541|gb|EDS05671.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC
          35704]
          Length = 112

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + IRK   +TQ ++  +   + S+IS +E G S++ +D    +A  L     ++ 
Sbjct: 8  GQRIQEIRKAQGITQNQLAEKLHVSPSFISRIENGSSSLTVDFACEIADALHVARQEIF 66


>gi|297153608|gb|ADI03320.1| putative transcriptional regulator, XRE family protein
          [Streptomyces bingchenggensis BCW-1]
          Length = 172

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+   L+  E+  R+   +  +SELE G+    ++ +  L   L+ PL
Sbjct: 7  VGLRLRELREAQDLSLSELARRSAIGKGTLSELEGGRRNPTLETLYALTTALNVPL 62


>gi|254476881|ref|ZP_05090267.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. R11]
 gi|214031124|gb|EEB71959.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. R11]
          Length = 188

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 71


>gi|210610577|ref|ZP_03288503.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787]
 gi|210152436|gb|EEA83442.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787]
          Length = 147

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +K      + A+ +E ++  N  R  RKE   +Q+ +  ++G + + IS +E G+  ++
Sbjct: 8  GKKGGTTLGNRAVSQELIMLGNRIREYRKERGFSQEILAEKSGVSTNTISRIEGGQMAMS 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  +   L      LL
Sbjct: 68 VGILQRIVKALGVDANVLL 86


>gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753]
 gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753]
          Length = 114

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +    + F+  R+++ LTQ+ +  + G + ++IS +E G +  +++ +I++ + +     
Sbjct: 7  KKAVGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVNFPSLEKLILIINEIGATAD 66

Query: 79 KLLK 82
          ++  
Sbjct: 67 QIFT 70


>gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans
          NG80-2]
 gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
          NG80-2]
 gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 260

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  IS+ E G+     + ++++A+  +  +  LL
Sbjct: 3  FGEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLLMIANIFEVSIDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|157370727|ref|YP_001478716.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157322491|gb|ABV41588.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 189

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD P+ +L
Sbjct: 14 LLSSAIRRERERLGLSVTELARRAGIAKSTLSQLETGNGNPSLETLWALAMALDVPVSRL 73

Query: 81 L 81
          +
Sbjct: 74 I 74


>gi|77459247|ref|YP_348754.1| XRE family transcriptional regulator [Pseudomonas fluorescens
          Pf0-1]
 gi|77383250|gb|ABA74763.1| putative HTH-type regulatory potein [Pseudomonas fluorescens
          Pf0-1]
          Length = 84

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+    N R +R+   LTQ+++       ++++S++E      ++  +  LA+  +    
Sbjct: 9  RLQLAENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLANIFEITAD 68

Query: 79 KLL 81
          +LL
Sbjct: 69 QLL 71


>gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 142

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  I   E  KS  +IDN+I+L+   +  L  
Sbjct: 1  MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKSYPDIDNLILLSEMYNVTLDA 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|294085273|ref|YP_003552033.1| DNA-binding protein [Candidatus Puniceispirillum marinum
          IMCC1322]
 gi|292664848|gb|ADE39949.1| DNA-binding protein [Candidatus Puniceispirillum marinum
          IMCC1322]
          Length = 208

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 5  KRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
            +       +  ER            R  RK+  +T  E+ + TG +   +S++E G +
Sbjct: 2  PANLNQDPHRLKDEREKILELAIGREVRAHRKQQNITVAELAHLTGISIGMVSKIENGNT 61

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
          + ++  +  L++ L   L    +
Sbjct: 62 SPSLSTLQTLSNALGVTLTSFFR 84


>gi|242398850|ref|YP_002994274.1| Predicted transcription regulator, containing CBS domains
          [Thermococcus sibiricus MM 739]
 gi|242265243|gb|ACS89925.1| Predicted transcription regulator, containing CBS domains
          [Thermococcus sibiricus MM 739]
          Length = 186

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +  RKE  +TQ+E+  R G  Q++I++LETGK    +     +   L 
Sbjct: 11 KEIKRFRKELGITQEELAQRAGVTQAYIAKLETGKVDPRLSTFNRILQALK 61


>gi|225869491|ref|YP_002745438.1| DNA-binding protein [Streptococcus equi subsp. equi 4047]
 gi|225698895|emb|CAW91878.1| putative DNA-binding protein [Streptococcus equi subsp. equi
          4047]
          Length = 120

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R E +L+Q  +  +   ++  IS+ E G +T +++N++ LA  L+  L +L+
Sbjct: 4  FAEQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELV 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|115379556|ref|ZP_01466646.1| transcriptional regulator, XRE family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821728|ref|YP_003954086.1| XRE family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363441|gb|EAU62586.1| transcriptional regulator, XRE family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394800|gb|ADO72259.1| Transcriptional regulator, XRE family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 284

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%)

Query: 12  SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            DA      +   N R +R +  L+ + +   +G +++ + ++E G+S   I+ +  +A 
Sbjct: 94  PDADQDLAPVVGKNLRRLRIQRGLSLERLSKASGVSRAMLGQIELGQSAPTINVLWKIAR 153

Query: 72  TLDTPLWKLL 81
            LD P   L+
Sbjct: 154 ALDLPFSALI 163


>gi|71277752|ref|YP_270505.1| DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71143492|gb|AAZ23965.1| DNA-binding protein [Colwellia psychrerythraea 34H]
          Length = 209

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H ++  + E+       + IR E KLT +E   RTG A+S +S++E  + +     M  L
Sbjct: 18 HENNKRVVEKATIGVQLKAIRTENKLTLEEASKRTGLARSTLSKIENEQISPTFSVMQKL 77

Query: 70 AHTLDTPLWKLLK 82
          A  L+  L +L  
Sbjct: 78 ASGLNIELPQLFT 90


>gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
 gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 206

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP R    P   D    +  +     R +R     + +E+  R   +QS +S +E G   
Sbjct: 1  MPCRHSMLPMTQDNGELD-SLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGHRR 59

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
          + +D ++ LA  LDT L +L++
Sbjct: 60 LALDQLVTLARALDTSLDQLVE 81


>gi|269928987|ref|YP_003321308.1| transcriptional regulator of molybdate metabolism, XRE family
          [Sphaerobacter thermophilus DSM 20745]
 gi|269788344|gb|ACZ40486.1| transcriptional regulator of molybdate metabolism, XRE family
          [Sphaerobacter thermophilus DSM 20745]
          Length = 378

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  R  R  A L+Q+ +  R G  +  +S +E G+   N    + LA  L  P+ +L +
Sbjct: 12 SQVRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEELFR 70


>gi|160942751|ref|ZP_02089992.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445916|gb|EDP22919.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium
          prausnitzii M21/2]
          Length = 220

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N    +RK   LTQ E+  +       +S  E G    +I+ +  LA  L   L  L+
Sbjct: 6  FGNYLSRMRKAQGLTQAELAEQLHVTDKAVSRWERGIGLPDINTLEPLADALGLTLADLM 65


>gi|17230454|ref|NP_487002.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|17132056|dbj|BAB74661.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 102

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +R    L+QKE+  R G ++S++SE+E+GK    +D +   +   D P
Sbjct: 6  LRLMRVFHDLSQKEMAERLGISKSYLSEIESGKKIPTLDLLNRYSGLFDIP 56


>gi|146294622|ref|YP_001185046.1| XRE family transcriptional regulator [Shewanella putrefaciens
          CN-32]
 gi|145566312|gb|ABP77247.1| transcriptional regulator, XRE family [Shewanella putrefaciens
          CN-32]
          Length = 106

 Score = 54.6 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
             D +L+  + F    +  R E    Q+ + ++   A+S++S +E G +  +I ++  L
Sbjct: 25 VNEDEVLKMGIAFGRAVKLRRVELGYNQEGLADKAELARSFVSSVERGVAKASIASVWKL 84

Query: 70 AHTLDTPLWKL 80
          A  L+     L
Sbjct: 85 AQALNCNPSDL 95


>gi|291619732|ref|YP_003522474.1| YdcN [Pantoea ananatis LMG 20103]
 gi|291154762|gb|ADD79346.1| YdcN [Pantoea ananatis LMG 20103]
          Length = 183

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A LT  E+  R G A+S +S+LE G     I+ +  L   L+ P  +L
Sbjct: 8  IIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARL 67

Query: 81 LKP 83
          ++P
Sbjct: 68 MEP 70


>gi|256599670|pdb|3G5G|A Chain A, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599671|pdb|3G5G|B Chain B, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599672|pdb|3G5G|C Chain C, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599673|pdb|3G5G|D Chain D, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599674|pdb|3G5G|E Chain E, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599675|pdb|3G5G|F Chain F, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599676|pdb|3G5G|G Chain G, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599677|pdb|3G5G|H Chain H, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599678|pdb|3G5G|I Chain I, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599679|pdb|3G5G|J Chain J, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599680|pdb|3G5G|K Chain K, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599681|pdb|3G5G|L Chain L, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599682|pdb|3G5G|M Chain M, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
 gi|256599683|pdb|3G5G|N Chain N, Crystal Structure Of The Wild-Type
          Restriction-Modification Controller Protein C.Esp1396i
          Length = 99

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + IR E  +TQ+++  ++   +++IS +E     + I ++ ++   L+  
Sbjct: 33 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 83


>gi|229084977|ref|ZP_04217229.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44]
 gi|228698293|gb|EEL51026.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44]
          Length = 193

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R E  +T KE+  ++  +  ++S+LE G +TI +D++  LA   +  L    
Sbjct: 4  GMEIKKLRAEKGITLKELSEKSELSVGFLSQLERGLTTIAVDSLEKLADVFEVHLTHFF 62


>gi|332976056|gb|EGK12926.1| DNA-binding protein [Desmospora sp. 8437]
          Length = 179

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+    T K++  RT  + S++S++E G S++ I ++  +A     P+ +  
Sbjct: 6  NEIRRLRQSRGYTLKDLSERTELSVSFLSQVERGTSSLAITSLKKIADAFGVPIRQFF 63


>gi|323495755|ref|ZP_08100825.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM
          21326]
 gi|323319222|gb|EGA72163.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM
          21326]
          Length = 506

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63
          LS +++R+        RN+RK   LT +++  R          + S++S +E GK   +I
Sbjct: 3  LSKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSI 62

Query: 64 DNMIILAHTLDT-PLWKL 80
          D + ++A      P W L
Sbjct: 63 DMLEVIAEVFQKDPAWFL 80


>gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate
          transferase) [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
 gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate
          transferase) [Propionibacterium freudenreichii subsp.
          shermanii CIRM-BIA1]
          Length = 511

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+ RK+  +TQ ++      +QS I  +E+G   ++++ +  +A  L++PL
Sbjct: 11 GRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQNLSLETINRIAGALESPL 65


>gi|212223696|ref|YP_002306932.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
 gi|212008653|gb|ACJ16035.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
          Length = 190

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          ++  R I     R IRKE  +TQ+E+  + G  Q++I++LE GK    +     +   L
Sbjct: 2  VIIPRPIDPKEIRRIRKELGITQEELAEKAGVTQAYIAKLEAGKVDPRLSTFNRILQAL 60


>gi|196035713|ref|ZP_03103116.1| DNA-binding protein [Bacillus cereus W]
 gi|228913383|ref|ZP_04077016.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228925881|ref|ZP_04088965.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228932124|ref|ZP_04095015.1| Transcriptional regulator [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|195991680|gb|EDX55645.1| DNA-binding protein [Bacillus cereus W]
 gi|228827552|gb|EEM73295.1| Transcriptional regulator [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228833896|gb|EEM79449.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228846292|gb|EEM91311.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 66

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQQLAAKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|110679954|ref|YP_682961.1| transcriptional regulator [Roseobacter denitrificans OCh 114]
 gi|109456070|gb|ABG32275.1| transcriptional regulator HTH-3 family, putative [Roseobacter
          denitrificans OCh 114]
          Length = 207

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T ++   + G A+S +S++E G+ +   D +  LA  L+  + +L 
Sbjct: 27 LGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|22855027|ref|NP_690787.1| immunity repressor [Bacillus phage phi105]
 gi|133375|sp|P06153|RPC_BPPH1 RecName: Full=Immunity repressor protein
 gi|1196714|gb|AAA88396.1| unknown protein [Bacillus phage phi105]
 gi|4126640|dbj|BAA36660.1| immunity repressor [Bacteriophage phi-105]
 gi|295002743|gb|ADF59164.1| immunity repressor [Bacillus phage phi105]
 gi|224753|prf||1112178A ORF 1
          Length = 144

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + IRKE KLTQ ++  +   ++S+++++E  +   ++  +  +A  L   +  
Sbjct: 1  MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 60

Query: 80 LL 81
          ++
Sbjct: 61 IV 62


>gi|288906392|ref|YP_003431614.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306832439|ref|ZP_07465592.1| XRE family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|325979406|ref|YP_004289122.1| HTH-type transcriptional regulator rdgA [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288733118|emb|CBI14699.1| putative transcriptional regulator [Streptococcus gallolyticus
          UCN34]
 gi|304425479|gb|EFM28598.1| XRE family transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus TX20005]
 gi|325179334|emb|CBZ49378.1| HTH-type transcriptional regulator rdgA [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 166

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK   L+Q+++  R   ++  IS+ E G +  + DN+++L+     P+  LL
Sbjct: 3  FGEKLKQLRKANHLSQEKLSERIHVSRQAISKWEQGSAIPDTDNIVLLSKFFQVPIEYLL 62


>gi|271969477|ref|YP_003343673.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270512652|gb|ACZ90930.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 92

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 31/67 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE ++      N R E  L+Q E+  R G  Q  +S LETG  T  +  +  LA  LD  
Sbjct: 22 REALLLGQQVYNRRTELGLSQAELAERAGMTQPQVSRLETGGVTPTLALLRRLAKALDAE 81

Query: 77 LWKLLKP 83
          L    KP
Sbjct: 82 LNVTFKP 88


>gi|153941561|ref|YP_001393012.1| hypothetical protein CLI_A0008 [Clostridium botulinum F str.
          Langeland]
 gi|152937441|gb|ABS42938.1| conserved domain protein [Clostridium botulinum F str. Langeland]
 gi|295320987|gb|ADG01364.1| hypothetical protein CBF_P0008 [Clostridium botulinum F str.
          230613]
          Length = 64

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  L+Q+++  + G  +  IS +E GK   ++   I +   L+  L  L 
Sbjct: 4  RKMKIARVECDLSQQQLAEKVGITRQTISMIEAGKYNPSLKLCIGICKVLNKTLNDLF 61


>gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
           39073]
 gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC
           39073]
          Length = 300

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R++  +T  E+  R+G + + ISE+E  +ST ++  +  LA  L+     LL
Sbjct: 73  VGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRSTASLKTLEKLAAVLEVSTSSLL 132

Query: 82  K 82
           +
Sbjct: 133 R 133



 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           ++       + +R++  LTQKE+  + G + S I ++ET +   ++  +  LA  L   
Sbjct: 136 QQDSLGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSSLAEALGVS 194



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 26/56 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M      + +R++  +  +E+ +R   A + + E+E G   +++  +  +A  L  
Sbjct: 1  MTIGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGTRRLSLATLKEVAAILGV 56


>gi|322374196|ref|ZP_08048729.1| putative transcriptional repressor [Streptococcus sp. C150]
 gi|321276901|gb|EFX53973.1| putative transcriptional repressor [Streptococcus sp. C150]
          Length = 66

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    LTQ+ + +  G ++  IS +E G     I+  I +  TLD  L +L 
Sbjct: 5  KLKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61


>gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 184

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + +R+E KL+   +   +G ++S + ++E G +   I  +  +A+ L      
Sbjct: 6  HIVAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTNPTISTLWKIANGLKISFTS 65

Query: 80 LL 81
          L+
Sbjct: 66 LM 67


>gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 177

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R +  LT + +  RTG  +S++S++E  +ST +I   + +A  LD  + +L 
Sbjct: 5  LRAVRTQRGLTLEALAERTGLTKSYLSKIERRQSTPSIAVALKVAKALDVDVGQLF 60


>gi|228989826|ref|ZP_04149806.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
 gi|228996017|ref|ZP_04155672.1| Transcriptional regulator [Bacillus mycoides Rock3-17]
 gi|229003633|ref|ZP_04161448.1| Transcriptional regulator [Bacillus mycoides Rock1-4]
 gi|228757599|gb|EEM06829.1| Transcriptional regulator [Bacillus mycoides Rock1-4]
 gi|228763713|gb|EEM12605.1| Transcriptional regulator [Bacillus mycoides Rock3-17]
 gi|228769973|gb|EEM18556.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
          Length = 72

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + ++  L  L 
Sbjct: 10 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNQTLNDLF 67


>gi|134297168|ref|YP_001120903.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134140325|gb|ABO56068.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia vietnamiensis G4]
          Length = 183

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|126731243|ref|ZP_01747050.1| DNA-binding protein, putative [Sagittula stellata E-37]
 gi|126708154|gb|EBA07213.1| DNA-binding protein, putative [Sagittula stellata E-37]
          Length = 206

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE   T ++   + G A+S +S++E G+ +   D +  LA  L+  + +L 
Sbjct: 26 LGLRVRELRKEKDWTLEQAAKKAGLARSTLSKIENGQMSPTYDALKKLATGLEISVPQLF 85

Query: 82 KP 83
           P
Sbjct: 86 TP 87


>gi|107023923|ref|YP_622250.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116691009|ref|YP_836632.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|170734344|ref|YP_001766291.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|105894112|gb|ABF77277.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia AU 1054]
 gi|116649098|gb|ABK09739.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia HI2424]
 gi|169817586|gb|ACA92169.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 183

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|260595940|ref|YP_003208511.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032]
 gi|260215117|emb|CBA26887.1| hypothetical protein CTU_01480 [Cronobacter turicensis z3032]
          Length = 182

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R  A L+  E+  R G A+S +S+LE G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERTRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALDIPFARL 66

Query: 81 LKP 83
          ++P
Sbjct: 67 MEP 69


>gi|146294918|ref|YP_001185342.1| helix-turn-helix domain-containing protein [Shewanella
          putrefaciens CN-32]
 gi|145566608|gb|ABP77543.1| helix-turn-helix domain protein [Shewanella putrefaciens CN-32]
          Length = 68

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK   ++Q+++   T   +S++  +E G+  I ++    LA  L   +  LL
Sbjct: 8  FGAKLREERKRRGISQEKVALLTEIDRSYMGRIERGEVNITLEKAYQLAEALGCDIRVLL 67


>gi|325520437|gb|EGC99543.1| putative DNA-binding protein [Burkholderia sp. TJI49]
          Length = 76

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  R +R+    +Q+++    G  +S++ E+E G++  +I     +A   D 
Sbjct: 8  FGSTVRRLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTAHKIARAFDV 61


>gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 192

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +T  ++   TG ++S +S LE+G+    ++ ++ LA   D PL  L+
Sbjct: 12 VGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVPLDDLV 71


>gi|297201607|ref|ZP_06919004.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|297147931|gb|EDY55056.2| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 202

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 5  KRDEPHLSDAILRERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          + D  +        R+       + R  R  A L+  E+  R G A+S +S+LE      
Sbjct: 8  RTDGANSMSDSPPPRLPLDWIAASLRRERTRAGLSLSELAKRAGIAKSTLSQLEAAGGNP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
          +++ +  L   L  P   L++P
Sbjct: 68 SVETLWALGVALGVPFSALVEP 89


>gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM
          9485]
 gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM
          9485]
          Length = 211

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+  +++ + +   +G A + +S +E G+++ ++  +  LA  L  P+    
Sbjct: 22 VGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPISAFF 81

Query: 82 KP 83
           P
Sbjct: 82 TP 83


>gi|145221479|ref|YP_001132157.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|145213965|gb|ABP43369.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
          Length = 83

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 1  MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP R  ++ P         R +     R +R    +TQ+ +  R+G  ++ + ++E G+ 
Sbjct: 1  MPTRPSQNNPERVAQWEHWRRLVGAKIRELRIARDMTQEALALRSGVTRNVLIDVEHGRR 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
           +  + +  +A  LD  + +LL
Sbjct: 61 GLLYERLFDIADALDVNVAELL 82


>gi|86606494|ref|YP_475257.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab]
 gi|86555036|gb|ABC99994.1| transcriptional regulator PatB [Synechococcus sp. JA-3-3Ab]
          Length = 550

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 32/65 (49%)

Query: 9   PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           P         + +   +    R++  ++Q+E+  R G +QSW+ ++E G+  I++++   
Sbjct: 477 PEDPKDFSSGKALRGADISAARQQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQR 536

Query: 69  LAHTL 73
           L   L
Sbjct: 537 LIKAL 541


>gi|37676355|ref|NP_936751.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200897|dbj|BAC96721.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 232

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           E +      + +R    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 49  EPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLKIDM 108

Query: 78  WKLLKP 83
            +L +P
Sbjct: 109 PQLFEP 114


>gi|322805033|emb|CBZ02593.1| putative transcriptional regulatory protein [Clostridium
          botulinum H04402 065]
          Length = 182

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R +  L+  ++   +G ++  +S++E G+S   I+ +  +A+ L     KL
Sbjct: 6  IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|229589439|ref|YP_002871558.1| putative HTH-type regulatory protein [Pseudomonas fluorescens
          SBW25]
 gi|312961102|ref|ZP_07775607.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|229361305|emb|CAY48169.1| putative HTH-type regulatory potein [Pseudomonas fluorescens
          SBW25]
 gi|311284760|gb|EFQ63336.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 84

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+    N R +R+   LTQ+++       ++++S++E      ++  +  LA+  +    
Sbjct: 9  RLQLAENIRLMRRVKNLTQEQLALMAEVDRTYVSQIERCTGNPSLLVLCKLANIFEITAD 68

Query: 79 KLL 81
          +LL
Sbjct: 69 QLL 71


>gi|226947977|ref|YP_002803068.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226842052|gb|ACO84718.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 182

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R +  L+  ++   +G ++  +S++E G+S   I+ +  +A+ L     KL
Sbjct: 6  IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|218780458|ref|YP_002431776.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761842|gb|ACL04308.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 209

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N    R    +TQ ++   +G +++ I++LE G+    +  +I L+ +LD+  W LL
Sbjct: 13 LAKNIVVARSALGITQGDLAKDSGISRATIAQLEAGEGDPKLSTLISLSKSLDSTHWHLL 72

Query: 82 K 82
           
Sbjct: 73 T 73


>gi|170756638|ref|YP_001780356.1| hypothetical protein CLD_0038 [Clostridium botulinum B1 str.
          Okra]
 gi|169121850|gb|ACA45686.1| conserved hypothetical protein [Clostridium botulinum B1 str.
          Okra]
          Length = 182

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R +  L+  ++   +G ++  +S++E G+S   I+ +  +A+ L     KL
Sbjct: 6  IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames]
 gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne]
 gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488]
 gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442]
 gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193]
 gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465]
 gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389]
 gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174]
 gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis
          Tsiankovskii-I]
 gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99]
 gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108]
 gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820]
 gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102]
 gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684]
 gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-42]
 gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201]
 gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC
          6E1]
 gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248]
 gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055]
 gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B]
 gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum]
 gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94]
 gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames]
 gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne]
 gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L]
 gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488]
 gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193]
 gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442]
 gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389]
 gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465]
 gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174]
 gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis
          Tsiankovskii-I]
 gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108]
 gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99]
 gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820]
 gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102]
 gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684]
 gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC
          6E1]
 gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201]
 gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-42]
 gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248]
          Length = 107

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 123

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D +   R +     + +RK A L+Q E+    G     I   E G    +I+ +I L+  
Sbjct: 9  DTVDSLRSVVGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGIHMPSIEQLIKLSTA 68

Query: 73 LDTPLWKLL 81
          L     +LL
Sbjct: 69 LKVSPAELL 77


>gi|307545860|ref|YP_003898339.1| XRE family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307217884|emb|CBV43154.1| transcriptional regulator, XRE family [Halomonas elongata DSM
          2581]
          Length = 179

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + + +R+    +  ++    G A+S +S LE G     +D +  LA  L+ P   L+
Sbjct: 12 LGQHLQTLRRARGWSLSQLATAAGIAKSNLSRLEQGDGNPTLDTIWRLAVQLNVPFGTLV 71

Query: 82 KP 83
           P
Sbjct: 72 AP 73


>gi|229095345|ref|ZP_04226337.1| Transcriptional regulator [Bacillus cereus Rock3-29]
 gi|229101455|ref|ZP_04232196.1| Transcriptional regulator [Bacillus cereus Rock3-28]
 gi|229114294|ref|ZP_04243715.1| Transcriptional regulator [Bacillus cereus Rock1-3]
 gi|228669314|gb|EEL24735.1| Transcriptional regulator [Bacillus cereus Rock1-3]
 gi|228681943|gb|EEL36079.1| Transcriptional regulator [Bacillus cereus Rock3-28]
 gi|228688204|gb|EEL42090.1| Transcriptional regulator [Bacillus cereus Rock3-29]
          Length = 66

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|116328428|ref|YP_798148.1| transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116331157|ref|YP_800875.1| transcriptional regulator [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116121172|gb|ABJ79215.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
          serovar Hardjo-bovis L550]
 gi|116124846|gb|ABJ76117.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii
          serovar Hardjo-bovis JB197]
          Length = 102

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE  IF  N    RK A LTQ EI  R G  QS+IS++E+G+  +++     +   L   
Sbjct: 8  REAKIFCKNLIAARKSADLTQLEIAKRLGEPQSYISKIESGERRLDVIEFWRIYKILGKS 67


>gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
          Length = 251

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N+ + IRK  K+TQKE+   TGF Q+ IS  E G   ++  ++   A  L     +L
Sbjct: 3  ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1]
 gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1]
          Length = 247

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N+ + IRK  K+TQKE+   TGF Q+ IS  E G   ++  ++   A  L     +L
Sbjct: 3  ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|300725156|ref|YP_003714484.1| putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|297631701|emb|CBJ92414.1| Putative DNA-binding protein [Xenorhabdus nematophila ATCC 19061]
          Length = 182

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R    L+  E+  R G A+S +S+LE G    +++ +  L   L+ P  +L
Sbjct: 7  VIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|254246992|ref|ZP_04940313.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184]
 gi|124871768|gb|EAY63484.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184]
          Length = 189

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 97

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+ R EA L+Q  + +R   + S+IS LE+GK   +I+ +I +A  L+     +L
Sbjct: 26 GTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESGKRYPSIEMLIRIALALNIKPGLML 84


>gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
 gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
          Length = 137

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+++  + G ++  IS  E   S  ++  ++ +    +  L +L+K
Sbjct: 6  GHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSLNQLIK 65


>gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 143

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RKE K TQ+E+  +    +  IS  E G  T ++D +I +++  +  +  
Sbjct: 1  MSFPYRLKQLRKEHKWTQEELGAKLNLTKVSISGYENGNRTPDMDTLIKISNVFNVSIDY 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|228943003|ref|ZP_04105508.1| Transcriptional regulator [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228975941|ref|ZP_04136462.1| Transcriptional regulator [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228977442|ref|ZP_04137836.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
 gi|228782266|gb|EEM30450.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
 gi|228783777|gb|EEM31835.1| Transcriptional regulator [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228816667|gb|EEM62787.1| Transcriptional regulator [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326938467|gb|AEA14363.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 66

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLF 61


>gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201]
 gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI]
 gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201]
 gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein
          [Bacillus cereus biovar anthracis str. CI]
          Length = 149

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055]
 gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
          Length = 149

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 189

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 11 VAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108]
 gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1]
 gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108]
 gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1]
          Length = 149

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99]
 gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42]
 gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99]
 gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42]
 gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 149

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820]
 gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820]
          Length = 149

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|154482414|ref|ZP_02024862.1| hypothetical protein EUBVEN_00081 [Eubacterium ventriosum ATCC
          27560]
 gi|149736733|gb|EDM52619.1| hypothetical protein EUBVEN_00081 [Eubacterium ventriosum ATCC
          27560]
          Length = 79

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N    RK  KLTQ ++       +S IS +E GK  ++ D +  L   L     +L 
Sbjct: 17 FGLNVVYYRKREKLTQLQLAELVDIDRSHISAIELGKVGVSFDVIFKLCDVLKITPKELF 76


>gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488]
 gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193]
 gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389]
 gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174]
 gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis
          Tsiankovskii-I]
 gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248]
 gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str.
          Western North America USA6153]
 gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum]
 gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str.
          Australia 94]
 gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames
          Ancestor']
 gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488]
 gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193]
 gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389]
 gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174]
 gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis
          Tsiankovskii-I]
 gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248]
          Length = 149

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|89097356|ref|ZP_01170246.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. NRRL B-14911]
 gi|89088179|gb|EAR67290.1| post-exponential-phase response transcriptional regulator
          [Bacillus sp. NRRL B-14911]
          Length = 115

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R     +  E+  ++G ++S++S +E   +   ++  +  LA TL T + +
Sbjct: 1  MVGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDIQKNPSLQVLSKLAATLGTSVEE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
 gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
          Length = 209

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D+++ LA  LDT L +L
Sbjct: 11 LVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLARALDTSLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|319936912|ref|ZP_08011323.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808011|gb|EFW04586.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 69

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++I  NN +  R E  ++Q E+    G ++  IS +ETG+        +IL   LD   
Sbjct: 3  DQLILRNNLKEARHEKNISQTELAKMVGVSRQTISSIETGQFNPTAKLALILCIALDKTF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|294498706|ref|YP_003562406.1| helix-turn-helix domain-containing protein [Bacillus megaterium
          QM B1551]
 gi|294348643|gb|ADE68972.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
          Length = 87

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R E  ++Q+++   +   +++IS LE GK    I+ +  +++ L+   +K++
Sbjct: 7  FGIVIKKYRLERSMSQEKLAFGSDLDRTFISLLERGKRKPTINTLFSISNVLEVKPYKIV 66

Query: 82 K 82
          K
Sbjct: 67 K 67


>gi|255598541|ref|XP_002537032.1| conserved hypothetical protein [Ricinus communis]
 gi|223517747|gb|EEF25351.1| conserved hypothetical protein [Ricinus communis]
          Length = 318

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D    +R++     R  R+   L+Q+++    G ++  ++ +E G   +    +  L+ 
Sbjct: 3  PDPTDEQRLLLAQRLREAREYVGLSQEDVATALGISRPAVTNIEAGTRKVEAVELDKLSQ 62

Query: 72 TLDT 75
              
Sbjct: 63 LYGK 66


>gi|153004833|ref|YP_001379158.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5]
 gi|152028406|gb|ABS26174.1| transcriptional regulator, XRE family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 112

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           D    E   F    R  R+   LTQ+ +      + +++S +E G        ++ +A  
Sbjct: 41  DPRRDELRRFGERVREQRRTRGLTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARA 100

Query: 73  LDTPLWKLL 81
           L  P   ++
Sbjct: 101 LGIPASSIV 109


>gi|118588049|ref|ZP_01545459.1| DNA binding protein, putative [Stappia aggregata IAM 12614]
 gi|118439671|gb|EAV46302.1| DNA binding protein, putative [Stappia aggregata IAM 12614]
          Length = 186

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+   L+ + +   +G ++S +S++E G+S   +  ++ L   L+     LL
Sbjct: 13 RLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLL 69


>gi|89897034|ref|YP_520521.1| hypothetical protein DSY4288 [Desulfitobacterium hafniense Y51]
 gi|89336482|dbj|BAE86077.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 215

 Score = 54.6 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +RK  KL+ K++  +T    S +S++E   ++ ++  +  +A  L  P+    
Sbjct: 40 LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 99


>gi|327396552|dbj|BAK13973.1| putative HTH-type transcriptional regulator YdcN [Pantoea
          ananatis AJ13355]
          Length = 183

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A LT  E+  R G A+S +S+LE G     I+ +  L   L+ P  +L
Sbjct: 8  IIARGLVRERQRAGLTLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVALNIPFARL 67

Query: 81 LKP 83
          ++P
Sbjct: 68 MEP 70


>gi|312961935|ref|ZP_07776432.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
 gi|311283745|gb|EFQ62329.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
          Length = 178

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK+  +T +++   TG  +S++S++E G S+ +I   + LA  L+    +L 
Sbjct: 2  AVQLRILRKKMGITLEQLAGLTGLTKSYLSKVERGVSSPSIAVALKLAKALNAQAEELF 60


>gi|302869357|ref|YP_003837994.1| Cupin 2 conserved barrel domain-containing protein
          [Micromonospora aurantiaca ATCC 27029]
 gi|315504168|ref|YP_004083055.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5]
 gi|302572216|gb|ADL48418.1| Cupin 2 conserved barrel domain protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315410787|gb|ADU08904.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5]
          Length = 207

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R     + +E+  R+G ++  + ++E  ++  +I  +  +A      + +LL
Sbjct: 15 VARQVRDLRAARGWSFEELAGRSGVSKGMLVQIEGARTNPSIGTLCRVADAFGVSIARLL 74

Query: 82 KP 83
          +P
Sbjct: 75 EP 76


>gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 187

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R  A ++   +   +G + S +S +E G  + +++ +  LA+ L  P  +  
Sbjct: 7  GAQVKALRMAADVSGGALAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRFF 65


>gi|190573333|ref|YP_001971178.1| putative HTH transcriptional regulator [Stenotrophomonas
          maltophilia K279a]
 gi|190011255|emb|CAQ44867.1| putative HTH transcriptional regulator [Stenotrophomonas
          maltophilia K279a]
          Length = 98

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R          +    + F    R +R E  + Q+ + +R G  +S + ++E G    
Sbjct: 8  PGRPAGATTFDAELA---LAFGATVRGLRVERGIAQESLAHRAGIERSHMGKIERGAHMP 64

Query: 62 NIDNMIILAHTLDTPLWKLL 81
           +  +  +A  L+  + +L+
Sbjct: 65 TLAIIFKIAGALECSVAELM 84


>gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          15998]
 gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          11379]
 gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
          15998]
 gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
          15998]
          Length = 213

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +T  E+  RTG  +S +S LE G     ++ ++ LA     PL +L+
Sbjct: 24 VGPRLRELRRRHGMTLAELAERTGINESTLSRLEGGTRKPTLELLLPLAEVHAVPLDELV 83


>gi|239834287|ref|ZP_04682615.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
 gi|239822350|gb|EEQ93919.1| Repressor protein C [Ochrobactrum intermedium LMG 3301]
          Length = 264

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    +N R    ++Q ++ +  G  +S IS LE+GK   ++D +  LA  L+ 
Sbjct: 40 FAFRLKNARVARDMSQAQLADLVGRDKSAISLLESGKRGASVDFVARLAKALNV 93


>gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B]
 gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B]
          Length = 179

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  ++ +   L T L +
Sbjct: 1  MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 179

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R   +LTQ E+  R    + +IS++E   ++ +I  ++ L   L T + K  
Sbjct: 4  GEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDLLEALGTDVKKFF 62


>gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 185

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  NN + +R++ KL+  ++   TG +++ + ++E G+S+ +I  +  +A+ L      
Sbjct: 6  LILANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLSFSS 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|328948203|ref|YP_004365540.1| hypothetical protein Tresu_1336 [Treponema succinifaciens DSM
          2489]
 gi|328448527|gb|AEB14243.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 107

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + IRK   L+Q E+  + G +   I+ +E  +   +   MI +A+ L+T  ++ L P
Sbjct: 13 NLKKIRKAKNLSQFELAEKAGLSDQTINSIEGKRLWPSDKTMIKIANALETDAYQFLIP 71


>gi|315647563|ref|ZP_07900665.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315277002|gb|EFU40343.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 184

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  +N +++R++ KL+  ++   TG +++ + ++E G+S+ +I  +  +A+ L      
Sbjct: 6  LILAHNLKSLREQRKLSLDKVAELTGISKTMLGQIERGESSPSITTVWKIANGLKLSFTS 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum
          DSM 7109]
 gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family)
          [Corynebacterium urealyticum DSM 7109]
          Length = 514

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 27/70 (38%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R            R    +  R +RKE  ++Q ++    G + S+++++E  +  + +  
Sbjct: 19 RASQSPRTPDETNRNFVGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAV 78

Query: 66 MIILAHTLDT 75
          +  +      
Sbjct: 79 LQKITRAFGV 88


>gi|86144456|ref|ZP_01062788.1| predicted transcriptional regulator [Vibrio sp. MED222]
 gi|85837355|gb|EAQ55467.1| predicted transcriptional regulator [Vibrio sp. MED222]
          Length = 505

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63
          LS +++R+        RN+RK   LT +++  R          + S++S +E GK   +I
Sbjct: 3  LSKSLVRQSHFLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSI 62

Query: 64 DNMIILAHTLDT-PLWKL 80
          D + ++A      P W L
Sbjct: 63 DMLEVIAQVFQKNPTWFL 80


>gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
 gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
          Length = 172

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ R+ + L+Q  +  +   ++  IS+ E G+   +I+N+I+L+      + +
Sbjct: 1  MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|323693691|ref|ZP_08107890.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum
           WAL-14673]
 gi|323502305|gb|EGB18168.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum
           WAL-14673]
          Length = 112

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       +  R + K+TQ+ +    G ++  +S+ E G S  +  N+  LA      + 
Sbjct: 46  RKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISVE 105

Query: 79  KLLK 82
           +LLK
Sbjct: 106 ELLK 109


>gi|320102695|ref|YP_004178286.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC
           43644]
 gi|319749977|gb|ADV61737.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644]
          Length = 222

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 2   PRR-----KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
           P R     +R+       ++ ER+      + +R E   + +E     G ++S +S++E 
Sbjct: 21  PGRVGSALRREGFIDPSEVVAERLR--QRVKTLRTERNWSLEEFSKACGVSRSMLSQIER 78

Query: 57  GKSTINIDNMIILAHTLDTPLWKLL 81
           G++   +  M  +A      L +L+
Sbjct: 79  GEANPTLAVMFRIAQVFGMSLGELI 103


>gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30]
 gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10]
 gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20]
 gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30]
 gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10]
 gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20]
          Length = 172

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ R+ + L+Q  +  +   ++  IS+ E G+   +I+N+I+L+      + +
Sbjct: 1  MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|238923198|ref|YP_002936713.1| hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656]
 gi|238925050|ref|YP_002938566.1| hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656]
 gi|238874872|gb|ACR74579.1| Hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656]
 gi|238876725|gb|ACR76432.1| Hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656]
 gi|291530658|emb|CBK96243.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 123

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       +  R + K+TQ+ +    G ++  +S+ E G S  +  N+  LA      + 
Sbjct: 57  RKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISVE 116

Query: 79  KLLK 82
           +LLK
Sbjct: 117 ELLK 120


>gi|226357088|ref|YP_002786828.1| XRE family transcriptional regulator [Deinococcus deserti VCD115]
 gi|226319078|gb|ACO47074.1| putative transcriptional regulator, XRE family [Deinococcus
          deserti VCD115]
          Length = 129

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E  L  K++      +  ++S+LE G++  +++ +  LA   +  +  LL+
Sbjct: 5  ERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLE 63


>gi|225378528|ref|ZP_03755749.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM
           16841]
 gi|225209631|gb|EEG91985.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM
           16841]
          Length = 131

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           F     ++R    +TQ+E+  R G  ++  +S +E G+ + +ID +I L+  L      L
Sbjct: 43  FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTDYL 102

Query: 81  L 81
           L
Sbjct: 103 L 103


>gi|332535597|ref|ZP_08411365.1| hypothetical protein PH505_db00030 [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|332034981|gb|EGI71502.1| hypothetical protein PH505_db00030 [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 95

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               I   N +  R ++  +Q E+ ++    QS+IS +E+G    + + +  + H L  
Sbjct: 15 QPALKIIGLNIKLARTKSGFSQAELADKLNVEQSYISRVESGSVAASCERIYEIIHLLGC 74

Query: 76 PLWKLL 81
              + 
Sbjct: 75 KASDIF 80


>gi|325983748|ref|YP_004296149.1| helix-turn-helix domain-containing protein [Nitrosomonas sp.
          AL212]
 gi|325533267|gb|ADZ27987.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212]
          Length = 120

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N   I +E K+T+ E+  + G + S+I+EL   K+  ++  +  +A  LDTPL  
Sbjct: 4  LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPLPL 63

Query: 80 LL 81
          L 
Sbjct: 64 LF 65


>gi|261366132|ref|ZP_05979015.1| toxin-antitoxin system, antitoxin component, Xre family
           [Subdoligranulum variabile DSM 15176]
 gi|282572066|gb|EFB77601.1| toxin-antitoxin system, antitoxin component, Xre family
           [Subdoligranulum variabile DSM 15176]
          Length = 116

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 17  RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R+        R  R + ++TQ+ +    G ++  +S+ E+GKS  +  N++ LA     P
Sbjct: 48  RQARTLGEVLRQHRTDCRMTQEFVAESLGVSRQAVSKWESGKSDPSTTNLMALARLYGLP 107

Query: 77  LWKLLK 82
             +LL+
Sbjct: 108 PEELLR 113


>gi|325980837|ref|YP_004293240.1| helix-turn-helix domain-containing protein [Nitrosomonas sp.
          AL212]
 gi|325533342|gb|ADZ28061.1| helix-turn-helix domain protein [Nitrosomonas sp. AL212]
          Length = 120

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N   I +E K+T+ E+  + G + S+I+EL   K+  ++  +  +A  LDTPL  
Sbjct: 4  LILTTNILRILREKKITKAELAEKAGISISFITELTNDKANPSLRVIEAIAKALDTPLPL 63

Query: 80 LL 81
          L 
Sbjct: 64 LF 65


>gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC
          29909]
 gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC
          29909]
          Length = 193

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
            +  H +  I     +   + R  R++  LT  E+  R G A+S +S+LE G    +++
Sbjct: 6  PDNSDHAATPI----GLLSASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLE 61

Query: 65 NMIILAHTLDTPLWKLL 81
           +  LA  LD P+ +L+
Sbjct: 62 TLWSLAMALDVPVSRLI 78


>gi|225570223|ref|ZP_03779248.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM
           15053]
 gi|225161018|gb|EEG73637.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM
           15053]
          Length = 215

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  +N + IR+   L+ ++  + T  ++S +S+LE G+    I  +  L+  L  P+  
Sbjct: 37  QLIADNLKEIRRSKALSLEQTSSLTSISKSMLSQLERGEVNPTISTVYKLSLGLKVPVTA 96

Query: 80  LLKP 83
              P
Sbjct: 97  FTAP 100


>gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM
          15053]
 gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM
          15053]
          Length = 158

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   LTQ+E+  +   ++  +S+ E+G++   ++ ++ L+   +     LL
Sbjct: 8  FAEKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTDYLL 67

Query: 82 KP 83
          KP
Sbjct: 68 KP 69


>gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str.
          ATCC 3626]
 gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str.
          ATCC 3626]
          Length = 268

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+++  + G ++  +S+ E+G+S  +++ +IIL+   +  +  L+
Sbjct: 3  LAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|254249104|ref|ZP_04942424.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|124875605|gb|EAY65595.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
          Length = 109

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R +R+    +Q+++    G  +S++ E+E G++  +I     +A   D  +  LL
Sbjct: 44  FGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTLL 103


>gi|21325693|dbj|BAC00314.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
          Length = 104

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           D   L    L  R          RK+  +TQ ++   +G  Q+ IS++E G +      
Sbjct: 26 EDASALITQELASRKALGQKLVKARKQRGVTQVQLAEASGVQQAEISKIERGLANPTFST 85

Query: 66 MIILAHTLD 74
          +  LA  L 
Sbjct: 86 LESLASHLG 94


>gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 188

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R + +L+ + +  + G  +S++S++E G S  +I   + +A  L   + +L 
Sbjct: 2  AGRLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSEPSISTALKIAEALGVEVGRLF 60


>gi|167634630|ref|ZP_02392950.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170687459|ref|ZP_02878676.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|254684118|ref|ZP_05147978.1| MerR family transcriptional regulator [Bacillus anthracis str.
          CNEVA-9066]
 gi|254741503|ref|ZP_05199190.1| MerR family transcriptional regulator [Bacillus anthracis str.
          Kruger B]
 gi|167530082|gb|EDR92817.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170668654|gb|EDT19400.1| DNA-binding protein [Bacillus anthracis str. A0465]
          Length = 181

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 35/59 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG +++++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKAFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC
          10782]
 gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC
          10782]
          Length = 245

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N+ + IRK  K+TQKE+   TGF Q+ IS  E G   ++  ++   A  L     +L
Sbjct: 3  ILGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|284044840|ref|YP_003395180.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949061|gb|ADB51805.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 93

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          + RR+ D PH +  + R    F    R +R+E  LT+  +   +G +  +I  +E G+  
Sbjct: 6  LDRRRLDSPHRNPLLER----FGLAARRLREERGLTRDAVGVASGLSPVYIGNIERGEVN 61

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            +     LA  L  PL  L+
Sbjct: 62 PTLLTQTRLATGLGIPLDALV 82


>gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 195

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L  TLD P  +LL P
Sbjct: 25 LRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGNPSLETLWALCVTLDVPPSRLLDP 82


>gi|290894052|ref|ZP_06557026.1| phage protein [Listeria monocytogenes FSL J2-071]
 gi|290556396|gb|EFD89936.1| phage protein [Listeria monocytogenes FSL J2-071]
          Length = 100

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R +   TQ+++ N  G +++  S +E G++  +++ ++ LA+  +     L
Sbjct: 1  MFGKKLKKLRNKTNKTQEDLANILGISRAAYSHIENGRNEPDMETIVKLANYFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|228987613|ref|ZP_04147727.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228772073|gb|EEM20525.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 194

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550]
 gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550]
          Length = 149

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +L+
Sbjct: 3  LGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 245

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N  R  RKE  LTQ+++ ++    +  +S  E   S  N+D ++ L+  L  PL  
Sbjct: 1  MQFANVLRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDI 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|220931033|ref|YP_002507941.1| transcriptional regulator, XRE family [Halothermothrix orenii H
          168]
 gi|219992343|gb|ACL68946.1| transcriptional regulator, XRE family [Halothermothrix orenii H
          168]
          Length = 182

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R +R     +  ++    G ++S + ++E GK+   +  +  +A +L+ P
Sbjct: 9  GKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNVP 62


>gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 200]
 gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis
          IBL 200]
          Length = 107

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|190404425|ref|YP_001961056.1| rcorf81 [Agrobacterium rhizogenes]
 gi|158322221|gb|ABW33638.1| rcorf81 [Agrobacterium rhizogenes]
          Length = 62

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R IR   +LTQ+E+ +RTG +   +  +E  + +  +  +  +A  L      L+ 
Sbjct: 4  NMRRIRHGKQLTQEEVAHRTGLSVRHVGAIERAEMSATVTVLGQIAEALGVEPAVLVT 61


>gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753]
 gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753]
          Length = 169

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM]
 gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 5  KRDEPH--LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           + +PH    +      +      R++R+  ++T  ++   TG +   +S++E G ++ +
Sbjct: 13 PKQDPHKITPNKERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSAS 72

Query: 63 IDNMIILAHTLDTPLWKLLK 82
          +  ++ LA  L  P+    K
Sbjct: 73 LTTLVTLARALSVPITDFFK 92


>gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 272

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N    RKE  LTQ+ + ++ G     +S+ ETG++  ++  +  L+  L+  + 
Sbjct: 2  RDMLAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMD 61

Query: 79 KLL 81
          KL 
Sbjct: 62 KLF 64


>gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
 gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus
          hominis subsp. hominis C80]
          Length = 137

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+++  + G ++  IS  E   S  ++  ++ +    +  L +L+K
Sbjct: 6  GHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQLIK 65


>gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 179

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  ++ +   L T L +
Sbjct: 1  MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275]
 gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275]
          Length = 158

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       ++ R++  +TQ+ +    G ++  +S+ E G S  +  N+I LA   +    
Sbjct: 92  RKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSDPSTSNLIALAKLFNMSPE 151

Query: 79  KLLK 82
           +LL+
Sbjct: 152 ELLQ 155


>gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 179

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  ++ +   L T L +
Sbjct: 1  MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60

Query: 80 LL 81
            
Sbjct: 61 FF 62


>gi|225164391|ref|ZP_03726653.1| putative transcriptional regulator, XRE family [Opitutaceae
          bacterium TAV2]
 gi|224801001|gb|EEG19335.1| putative transcriptional regulator, XRE family [Opitutaceae
          bacterium TAV2]
          Length = 133

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R    LTQ+E+   +GF  ++  +LE+G K  I ++ +  LA      +W+ L
Sbjct: 24 ASRLRELRSIHGLTQQEVSELSGFHFTFYQQLESGRKKQIWLETIERLAAPYGLEVWQFL 83

Query: 82 KP 83
          KP
Sbjct: 84 KP 85


>gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
 gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu50]
 gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
          Length = 137

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+++  + G ++  IS  E   S  ++  ++ +    +  L +L+K
Sbjct: 6  GHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSLNQLIK 65


>gi|300173352|ref|YP_003772518.1| helix-turn-helix domain-containing protein [Leuconostoc
          gasicomitatum LMG 18811]
 gi|299887731|emb|CBL91699.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG
          18811]
          Length = 184

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             N + +R E  +T   +   T  ++  +  +ETGK++ +IDN+  ++  L  P+
Sbjct: 6  VGENLKKVRIEKNMTLDNVAEMTDVSKPTLHNIETGKTSPSIDNLWKISSGLGIPI 61


>gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC
          35704]
 gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC
          35704]
          Length = 476

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             RM    N  + RK    +Q++I    G ++  +S+ E   S+ + +N+I LA  L  
Sbjct: 2  EVSRMSLGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLSSPSTENIIRLAEILRV 61

Query: 76 PLWKL 80
           + +L
Sbjct: 62 SVEEL 66


>gi|154707262|ref|YP_001424459.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111]
 gi|154356548|gb|ABS78010.1| transcriptional regulator [Coxiella burnetii Dugway 5J108-111]
          Length = 183

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R+E +++ + + +  G ++S I ++E+ +    +D    LA  L   L ++L
Sbjct: 4  FAERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQPTLDVAGKLAVALGKTLSEML 63


>gi|33326774|gb|AAQ08805.1| BzdR [Azoarcus sp. CIB]
          Length = 298

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 38/63 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  +  R++R +  +T+K +  ++G ++ ++++LETG   I+I  +  +A  L  P+  
Sbjct: 24 LMLGDRIRDLRAQRGMTRKMLAQQSGVSERYLAQLETGHGNISIILLRQIAQGLGFPIVD 83

Query: 80 LLK 82
          L++
Sbjct: 84 LVR 86


>gi|72163432|ref|YP_291089.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71917164|gb|AAZ57066.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 225

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             R R          R E  L+Q+E+  R G A  +I  LE     ++   +  LA  L
Sbjct: 4  KDQRARGDLGRRVAYRRAELGLSQEEVAERAGMAAGYIDYLERNPPNLSPGALSRLADAL 63

Query: 74 DTPLWKLL 81
           T    LL
Sbjct: 64 QTTPEALL 71


>gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1]
 gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1]
          Length = 182

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +R   +L+Q+ I      ++  +S+ E G S  + DN++ L+      +  
Sbjct: 1  MFIGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSVED 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|229086444|ref|ZP_04218617.1| hypothetical protein bcere0022_30290 [Bacillus cereus Rock3-44]
 gi|228696876|gb|EEL49688.1| hypothetical protein bcere0022_30290 [Bacillus cereus Rock3-44]
          Length = 185

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I   N + IR++ KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L      
Sbjct: 6  LILARNLKAIREKEKLSLEKVSQLSGVSKAMIGQIERGESSPTLTTIWKIANGLKVSFTS 65

Query: 80 LL 81
          L+
Sbjct: 66 LI 67


>gi|269955944|ref|YP_003325733.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269304625|gb|ACZ30175.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 266

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R +R+ A +TQ+E+  R G  Q+ I+ +ETG+   ++  ++ LA      L   ++P
Sbjct: 11 LRRVREGAAMTQRELAQRAGVDQATIAGIETGRRMPSLPTLVRLAEAAGRQLRVEIEP 68


>gi|84496251|ref|ZP_00995105.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp.
          HTCC2649]
 gi|84383019|gb|EAP98900.1| putative UDP-N-acetylglucosamine transferase [Janibacter sp.
          HTCC2649]
          Length = 511

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ R+   LTQ E+ ++ G +QS ++ +E G+  ++++ +  +  TL +    L
Sbjct: 14 IRDARRHQGLTQNELADKLGTSQSAVARIEQGRQNLSLEMLARVGETLGSEFVSL 68


>gi|317121314|ref|YP_004101317.1| XRE family transcriptional regulator [Thermaerobacter marianensis
          DSM 12885]
 gi|315591294|gb|ADU50590.1| transcriptional regulator of molybdate metabolism, XRE family
          [Thermaerobacter marianensis DSM 12885]
          Length = 464

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          RR R                VN  R  R    L+Q+E+  R G  +  +S +E G++  +
Sbjct: 15 RRPRGAAGDPSGS------VVNGLRAARLRLGLSQQELAARAGVTRQAVSAIEGGQAAPS 68

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +   + LA  L   +  L 
Sbjct: 69 LGVALRLARALGCRVEDLF 87


>gi|262204600|ref|YP_003275808.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
           43247]
 gi|262087947|gb|ACY23915.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 233

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             N R +R +  L+  ++  R G +++ +S++E  +++ ++  +  LA   D     L +
Sbjct: 51  ARNVRRLRLQEGLSVGDMAARVGISKAMLSKIENAQTSCSLSTLARLATAFDVSPTSLFR 110


>gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-44]
 gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-44]
          Length = 107

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A+ L TP+  
Sbjct: 1  MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|217978763|ref|YP_002362910.1| transcriptional regulator, XRE family [Methylocella silvestris
          BL2]
 gi|217504139|gb|ACK51548.1| transcriptional regulator, XRE family [Methylocella silvestris
          BL2]
          Length = 217

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            PH+++  L E        R  RK   +T  E+    G +   +S++E G+ + ++  +
Sbjct: 23 SAPHVAERTLEE--AIGAQIRMHRKRLDITGGELAAAAGLSTGMLSKIENGQISPSLSTL 80

Query: 67 IILAHTLDTPLWKLLKP 83
            LA  L+ PL     P
Sbjct: 81 QSLARALNQPLSSFFTP 97


>gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax
          marinus SJ]
          Length = 189

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + +R +   TQK++   +G  ++ ++ +E+G+   ++ N+I LA  L+  +  L+
Sbjct: 20 NIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGNPSLSNIIKLAKALNVSIDLLV 76


>gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 148

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +R+E  LTQ+++  R    +  +S  ETG++T  ID   ++A  LD P+ +LL+
Sbjct: 7  LPELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITELLE 63


>gi|289449565|ref|YP_003474504.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|289184112|gb|ADC90537.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
          Length = 210

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229011703|ref|ZP_04168886.1| hypothetical protein bmyco0001_21500 [Bacillus mycoides DSM 2048]
 gi|228749661|gb|EEL99503.1| hypothetical protein bmyco0001_21500 [Bacillus mycoides DSM 2048]
          Length = 204

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++    N + IR++ KL+ +++   +G +++ I ++E G+S+  +  +  +A+ L     
Sbjct: 24 QITLAKNLKAIREKEKLSLEKVSQLSGVSKTMIGQIERGESSPTLTTIWKIANGLKVSFT 83

Query: 79 KLL 81
           L+
Sbjct: 84 SLI 86


>gi|170751194|ref|YP_001757454.1| XRE family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170657716|gb|ACB26771.1| transcriptional regulator, XRE family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 201

 Score = 54.2 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          + P      L ER +  +  R +R+E +L+  ++    G +   +S++E G+ + ++  +
Sbjct: 7  NAPTEDGKSL-ERAL-GHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATV 64

Query: 67 IILAHTLDTPLWKLL 81
            +A  L+ P+  L 
Sbjct: 65 NAVAKALNVPITTLF 79


>gi|291454777|ref|ZP_06594167.1| predicted protein [Streptomyces albus J1074]
 gi|291357726|gb|EFE84628.1| predicted protein [Streptomyces albus J1074]
          Length = 217

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R     N R  R     + +E+   TG ++  +S++E  ++   ++ +  LA  L T  
Sbjct: 40  AREALAQNVRRHRLARGWSLRELGAATGISKGLLSQIERAEANPTLEILTRLADVLATTC 99

Query: 78  WKLLK 82
             LL+
Sbjct: 100 TDLLR 104


>gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074]
 gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074]
          Length = 200

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 11 LVRKRIRALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|224371939|ref|YP_002606105.1| putative transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
 gi|223694658|gb|ACN17941.1| putative transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
          Length = 84

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              ++IRK+  +TQ ++ + TG +  +IS++E GK T  +D +  L   L   ++  + 
Sbjct: 17 GKAIKDIRKKKNMTQGDLADITGTSVKFISDVERGKETTQMDKVFDLVRALGIQIYLTID 76

Query: 83 P 83
          P
Sbjct: 77 P 77


>gi|192360886|ref|YP_001982699.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus
          Ueda107]
 gi|190687051|gb|ACE84729.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107]
          Length = 86

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R   +L+Q+ +  R    ++++ E+E G +  ++  +  +A  L+ P   L+
Sbjct: 7  FGRVVKQLRDTNRLSQEALAERADLNRTYLGEVERGVAIPSLATISKIATALNLPTSDLI 66


>gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          YPIII]
 gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis YPIII]
          Length = 209

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
                 +  R+E  ++Q E+  R G  +QS I   ET    +++++ ++LA  L+    
Sbjct: 2  ETIGQRIKRFREELSISQAELAQRCGWLSQSRIGNYETDSRKVSVEDAVVLAKALNVNPG 61

Query: 79 KLL 81
          +L+
Sbjct: 62 ELI 64


>gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 197

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R    LT  ++ NR G +++ IS +E G+++     +  L   L T L  
Sbjct: 15 EVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGTTLSA 74

Query: 80 LL 81
          L 
Sbjct: 75 LF 76


>gi|325289343|ref|YP_004265524.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324964744|gb|ADY55523.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 109

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +        RK   LTQ ++   TG + + IS +E   S  +I+ ++ +   LD     
Sbjct: 6  KVLGERIAKRRKVLNLTQDDVAEATGLSNNHISNIENNHSIPSIETLLKICEVLDITPDY 65

Query: 80 LL 81
           L
Sbjct: 66 FL 67


>gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 115

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R E K++Q+E+  +   +QS++ + E+GK  I  + ++ LA+  +  +  LL
Sbjct: 5  GIRLAQLRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLL 63


>gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 272

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 36/66 (54%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R+ +      +  RK   L+Q+++   TG ++  +++ ETG+S  ++D ++ ++  L   
Sbjct: 3  RKHLNIGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVS 62

Query: 77 LWKLLK 82
          L  LL+
Sbjct: 63 LDFLLR 68


>gi|300855914|ref|YP_003780898.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300436029|gb|ADK15796.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 119

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I     R IRK   L+ K++  +     + S++S++E G+S  + +N+ ++A  L+TP
Sbjct: 3  IIGTKLRKIRKATGLSLKQLSTKINGKISISFLSDIENGRSNPSFENLKLIAAALETP 60


>gi|255262604|ref|ZP_05341946.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62]
 gi|255104939|gb|EET47613.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62]
          Length = 225

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           R+    +DA            R +RK    T ++   + G A+S +S++E G+ +   D 
Sbjct: 32  RENGENADATPVN---LGERVRELRKARSWTLEQAAQKAGLARSTLSKIENGQMSPTYDA 88

Query: 66  MIILAHTLDTPLWKLLKP 83
           +  LA  L   + +L  P
Sbjct: 89  LKKLAVGLAISVPQLFTP 106


>gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides
          DSM 12442]
 gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock3-17]
 gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock1-4]
 gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock1-4]
 gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides
          Rock3-17]
 gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides
          DSM 12442]
          Length = 107

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A+ L  P+  
Sbjct: 1  MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048]
 gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048]
          Length = 149

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603]
 gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603]
          Length = 149

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196]
 gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196]
          Length = 149

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621]
 gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621]
          Length = 149

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3]
 gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3]
          Length = 149

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          10876]
 gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC
          10876]
          Length = 107

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|221271509|dbj|BAH15061.1| hypothetical protein [Vibrio parahaemolyticus]
 gi|328469183|gb|EGF40129.1| hypothetical protein VP10329_09881 [Vibrio parahaemolyticus
          10329]
          Length = 68

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R++RK+  ++Q ++       +S++  +E G+  I ++    +A  L   +  LL
Sbjct: 8  FGYNVRSMRKDKGISQDKLALAADIDRSYVGRIERGEVNITLEKAYQIASVLQCDIRVLL 67


>gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacterium smegmatis str. MC2 155]
 gi|118172523|gb|ABK73419.1| transcription regulator [Mycobacterium smegmatis str. MC2 155]
          Length = 189

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 26/60 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R+E  ++  ++  +    + ++S  E G + +++  ++ +   L   +  L +
Sbjct: 5  GARLRQFRRERGMSLTDVAAKAEVTKGFLSLAERGMTNVSVPVLMRICDALGIGIGDLFE 64


>gi|111222124|ref|YP_712918.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111149656|emb|CAJ61349.1| Putative transcriptional regulator [Frankia alni ACN14a]
          Length = 453

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R  A  +Q+++    G++ S IS LETGKS++++D +  +A+ L  P  +L
Sbjct: 12 GETIRLARLAAHQSQRQLGATLGYSASAISRLETGKSSLDLDTLRSIANVLHIPPEQL 69


>gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 149

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis
          ATCC 903]
 gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis
          ATCC 903]
          Length = 291

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 37/62 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    ++IRK+  ++Q+ +  + G ++  +++ ETG    +I+N+I +++  +  + +
Sbjct: 1  MTFAEKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 198

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 14 LVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 73

Query: 81 LK 82
          ++
Sbjct: 74 VE 75


>gi|294624392|ref|ZP_06703085.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
 gi|292601307|gb|EFF45351.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 11122]
          Length = 105

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R +  ++Q  I +R   + S++S LE  K    +  +  +A  L  P+  L 
Sbjct: 3  VGQAIRLCRTQRGVSQSAIASRANCSVSYLSMLENNKRDPTLSTVTQIAEALRVPVGLLF 62


>gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3]
 gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3]
          Length = 107

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|228929407|ref|ZP_04092428.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229198488|ref|ZP_04325192.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
 gi|228584991|gb|EEK43105.1| Transcriptional regulator, MerR [Bacillus cereus m1293]
 gi|228830195|gb|EEM75811.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 194

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|225387206|ref|ZP_03756970.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme
          DSM 15981]
 gi|225046685|gb|EEG56931.1| hypothetical protein CLOSTASPAR_00958 [Clostridium asparagiforme
          DSM 15981]
          Length = 88

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
                R    LTQKE+  RTG  Q+ IS+LE G    +++ +  LA  +   L     P
Sbjct: 26 RALVEARISQNLTQKELAARTGIDQADISKLENGTRNPSLNLLKRLADGMGMVLRIEFVP 85


>gi|120610886|ref|YP_970564.1| XRE family transcriptional regulator [Acidovorax citrulli
          AAC00-1]
 gi|120589350|gb|ABM32790.1| transcriptional regulator, XRE family [Acidovorax citrulli
          AAC00-1]
          Length = 285

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 36/71 (50%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P     +      F ++ R+ R++ +L+Q+++      +   +S +ETG++  + D ++ 
Sbjct: 12 PAHPSPVPGTHSPFGDHLRHWRRQRRLSQQDLALEAEVSTRHLSCVETGRAAPSRDMVLR 71

Query: 69 LAHTLDTPLWK 79
          LA  L  PL +
Sbjct: 72 LAERLAVPLRE 82


>gi|49078644|gb|AAT49805.1| PA1359 [synthetic construct]
          Length = 219

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 1   MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           M +       L +   R  ++     N R +R +A L+Q+ +      ++  +  +E+G 
Sbjct: 22  MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 81

Query: 59  STINIDNMIILAHTLDTPLWKLLK 82
             +++  +  +A  L      L++
Sbjct: 82  VNVSLSTLDRIAAALGVLFPDLVQ 105


>gi|71734977|ref|YP_275099.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555530|gb|AAZ34741.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 191

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+  +L   ++    G +Q  +S++E  + + ++DN+  L   L  P+ KL 
Sbjct: 7  LGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCDVLGMPMSKLF 66


>gi|89897035|ref|YP_520522.1| hypothetical protein DSY4289 [Desulfitobacterium hafniense Y51]
 gi|219667095|ref|YP_002457530.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89336483|dbj|BAE86078.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537355|gb|ACL19094.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 181

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRK   LT  ++ ++   +  +IS +E    + ++  +  +A  L  PL    
Sbjct: 4  VGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPSLATLKRIAQALSVPLESFF 63


>gi|229141099|ref|ZP_04269641.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|228642377|gb|EEK98666.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
          Length = 194

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|300774480|ref|ZP_07084343.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300506295|gb|EFK37430.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 209

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + IR+   L+QK   +     +  IS  E G++   I+ ++ +A   +  L +LL
Sbjct: 4  FGTNIKKIRQVKGLSQKAFADLFDLNRGVISSYEEGRAEPKIETILKVASHFNLNLDQLL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|81428935|ref|YP_395935.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78610577|emb|CAI55628.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 287

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     +  R  A  +Q+ + ++   ++  IS+ ET KS  +++ ++ LA   +  L +
Sbjct: 1  MLIGQRLKQFRLGAGYSQRTLADKLNVSRQVISKWETDKSVPDLNLLVGLAQLYNVSLTE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|121603452|ref|YP_980781.1| helix-turn-helix domain-containing protein [Polaromonas
          naphthalenivorans CJ2]
 gi|120592421|gb|ABM35860.1| helix-turn-helix domain protein [Polaromonas naphthalenivorans
          CJ2]
          Length = 90

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R+    +Q+++   +   +S++ E+E G +  ++  +  LA  L      L+
Sbjct: 9  FGIALRQSREARNWSQEQLAEHSNLNRSYVGEIERGSAIASLATVEKLALALGISPSALV 68


>gi|254465799|ref|ZP_05079210.1| transcriptional regulator, XRE family with cupin sensor
          [Rhodobacterales bacterium Y4I]
 gi|206686707|gb|EDZ47189.1| transcriptional regulator, XRE family with cupin sensor
          [Rhodobacterales bacterium Y4I]
          Length = 188

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL+
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72


>gi|167767673|ref|ZP_02439726.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1]
 gi|317499148|ref|ZP_07957425.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167710690|gb|EDS21269.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1]
 gi|291560806|emb|CBL39606.1| Helix-turn-helix [butyrate-producing bacterium SSC/2]
 gi|316893561|gb|EFV15766.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 120

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK+  +TQ+++      + S +S +ET   ++++  + ++A  L   + +
Sbjct: 7  KALGAKIKEYRKKENITQEQLAEMADISLSHMSNVETASVSVSLPALKLIADALGVTIDE 66

Query: 80 LL 81
          LL
Sbjct: 67 LL 68


>gi|86139426|ref|ZP_01057995.1| DNA binding protein, putative [Roseobacter sp. MED193]
 gi|85823929|gb|EAQ44135.1| DNA binding protein, putative [Roseobacter sp. MED193]
          Length = 188

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL+
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLLE 72


>gi|325263068|ref|ZP_08129803.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5]
 gi|324031461|gb|EGB92741.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5]
          Length = 122

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R+E  LTQ+E+ ++TG     + ++E G+   + D +      L     +L 
Sbjct: 9  LGQCLRDAREECGLTQQELADQTGRGLRHLQDIEKGRKNPSYDVLASFIKRLGISANELF 68

Query: 82 KP 83
           P
Sbjct: 69 YP 70


>gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 138

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R +RK   ++Q E+  + G ++  IS+ E  +S  +ID +I+L+   +     LLK
Sbjct: 6  RIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIPDIDKIIMLSDYFEVSTDYLLK 63


>gi|307727246|ref|YP_003910459.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1003]
 gi|307587771|gb|ADN61168.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 215

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K   P        +  +   + R  RK   LT  E+  R+G A S IS+ E G   +  D
Sbjct: 8  KTRSPAREAPPALDHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYD 67

Query: 65 NMIILAHTLDTPLWKLL 81
              LAH+L+     + 
Sbjct: 68 KFAALAHSLELEFDAIF 84


>gi|283834409|ref|ZP_06354150.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220]
 gi|291069953|gb|EFE08062.1| putative DNA-binding protein [Citrobacter youngae ATCC 29220]
          Length = 153

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 35/62 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + R+IR+E  +TQ EI  + G   +   ++E GKST++++N++     +D    K+
Sbjct: 8  ILAFHMRDIREEKGVTQAEIAEKLGMTSAGWGKVENGKSTLSVENLMKFCKLVDIDAQKI 67

Query: 81 LK 82
          L 
Sbjct: 68 LT 69


>gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium
          D16]
 gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium
          D16]
          Length = 259

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK++ L+Q+ + +  G ++  + + E G S  ++DN+  L    +  L  L+
Sbjct: 5  FQQRLYELRKQSGLSQEGLADLLGVSRQAVQKWEAGTSRPDLDNLAALGRYFNVSLDYLV 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|313110592|ref|ZP_07796475.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310882977|gb|EFQ41571.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 193

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          DE +    ++    +       +RKE +LT  ++  R   +++ IS +E  +S+     +
Sbjct: 2  DEKNPPGPLMDIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVL 61

Query: 67 IILAHTLDTPLWKLL 81
            LA  L   L +LL
Sbjct: 62 GRLASGLGIALSELL 76


>gi|116049312|ref|YP_791886.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584533|gb|ABJ10548.1| putative transcriptional regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 216

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 14  AILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
               ER         N R +R +A L+Q+ +      ++  +  +E+G   +++  +  +
Sbjct: 33  PSPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 92

Query: 70  AHTLDTPLWKLLK 82
           A  L      L++
Sbjct: 93  AAALGVLFPDLVQ 105


>gi|229145017|ref|ZP_04273412.1| hypothetical protein bcere0012_21770 [Bacillus cereus BDRD-ST24]
 gi|296502971|ref|YP_003664671.1| transcriptional regulator [Bacillus thuringiensis BMB171]
 gi|228638466|gb|EEK94901.1| hypothetical protein bcere0012_21770 [Bacillus cereus BDRD-ST24]
 gi|296324023|gb|ADH06951.1| transcriptional regulator [Bacillus thuringiensis BMB171]
          Length = 185

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++I   N + IR++ KL+ +++   TG +++ I ++E G S+  +  +  +A+ L     
Sbjct: 5  QLILAKNLKLIREKEKLSLEKVSQLTGVSKTMIGQIERGDSSPTLTTIWKIANGLKVSFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 SLI 67


>gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1]
          Length = 139

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R      L++    E+ +     R +R+E  L+  ++    G +Q  IS++E G  + ++
Sbjct: 3  RTASNAPLAEERPLEKAL-GYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSL 61

Query: 64 DNMIILAHTLDTPLWKLLK 82
           ++  +A  L+ P+  L  
Sbjct: 62 ASINAIASALNVPITGLFT 80


>gi|15596556|ref|NP_250050.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|9947301|gb|AAG04748.1|AE004565_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
          Length = 218

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 1   MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           M +       L +   R  ++     N R +R +A L+Q+ +      ++  +  +E+G 
Sbjct: 22  MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 81

Query: 59  STINIDNMIILAHTLDTPLWKLLK 82
             +++  +  +A  L      L++
Sbjct: 82  VNVSLSTLDRIAAALGVLFPDLVQ 105


>gi|24375356|ref|NP_719399.1| Cro/CI family transcriptional regulator [Shewanella oneidensis
          MR-1]
 gi|24350177|gb|AAN56843.1|AE015819_7 transcriptional regulator, Cro/CI family [Shewanella oneidensis
          MR-1]
          Length = 75

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +RK   L+Q E+  R    +S+I  +E  +  + +D +  +A  LD    +LL
Sbjct: 8  LGHAMRKMRKLRGLSQDELALRAEIDRSYIGRIERAEVNLTLDMLYKIAEELDCEPHELL 67


>gi|317488096|ref|ZP_07946673.1| hypothetical protein HMPREF1023_00371 [Eggerthella sp. 1_3_56FAA]
 gi|316912804|gb|EFV34336.1| hypothetical protein HMPREF1023_00371 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 37/65 (56%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R+R++  +  R  R+   L+Q+++    G ++S I  +E+G+ ++ +D++  +A  LD  
Sbjct: 5  RKRVLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQ 64

Query: 77 LWKLL 81
          +  L 
Sbjct: 65 VRDLF 69


>gi|319791791|ref|YP_004153431.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594254|gb|ADU35320.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 206

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
             P  +   L +R+      R++R    L+   +    G ++S IS +E G+S+     
Sbjct: 9  ESTPAPATTSLNDRI--AQRVRDLRASRSLSLDALATHCGVSRSMISLIERGESSPTAVL 66

Query: 66 MIILAHTLDTPLWKLL 81
          +  LA  L  PL  L 
Sbjct: 67 LEKLATGLGVPLASLF 82


>gi|260431708|ref|ZP_05785679.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415536|gb|EEX08795.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter lacuscaerulensis ITI-1157]
          Length = 188

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L      LL+
Sbjct: 15 RLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLLE 72


>gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC
          33638]
 gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC
          33638]
 gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC
          33638]
 gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC
          33638]
          Length = 193

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R  R++  LT  E+  R G A+S +S+LE G    +++ +  LA  LD P+ +L
Sbjct: 18 LLSASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRL 77

Query: 81 L 81
          +
Sbjct: 78 I 78


>gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 196

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N +  RK+  L Q ++  +   ++  IS  ETG++T +ID ++ +A     P+ +LL
Sbjct: 7  ENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPVDQLL 64


>gi|291326970|ref|ZP_06126519.2| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291312079|gb|EFE52532.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 95

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 R++R+   ++ K++    G +Q   S  E G+  I++D +  LA   +   
Sbjct: 7  KSVGLKIRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIFNVSP 64


>gi|219667096|ref|YP_002457531.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537356|gb|ACL19095.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 179

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +RK  KL+ K++  +T    S +S++E   ++ ++  +  +A  L  P+    
Sbjct: 4  LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 63


>gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622]
          Length = 116

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 23 VNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +R  +  + TQ+E+  R   + S++S +E G+   +++ +  LA+ L   L +L
Sbjct: 9  GQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVPHVETLAALANALGVSLGEL 68

Query: 81 LK 82
            
Sbjct: 69 FT 70


>gi|229155430|ref|ZP_04283539.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342]
 gi|228627991|gb|EEK84709.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342]
          Length = 157

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+  + +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L K
Sbjct: 1  MSLGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDK 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|229163310|ref|ZP_04291262.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
 gi|228620091|gb|EEK76965.1| Transcriptional regulator, MerR [Bacillus cereus R309803]
          Length = 194

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans
          DSM 16841]
 gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans
          DSM 16841]
          Length = 156

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L +     +M      +  RK+A  +Q+++  R   ++  I++ ET K   +I N+I ++
Sbjct: 3  LPNNKEDSKMNLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGIPDIVNLIAIS 62

Query: 71 HTLDTPLWKLLK 82
                L +L+K
Sbjct: 63 DEFGLSLDELIK 74


>gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987]
 gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987]
          Length = 107

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|24215545|ref|NP_713026.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45657075|ref|YP_001161.1| transcriptional regulator [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|24196688|gb|AAN50044.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45600312|gb|AAS69798.1| transcriptional regulator [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 98

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE  IF  N    RK+A LTQ E+ NR G  QS+IS++E+G+  +++     +   L   
Sbjct: 8  REAKIFCKNLIAARKDAHLTQLEVANRLGEPQSYISKIESGERRLDVVEFWRIFKILGKS 67

Query: 77 L 77
          L
Sbjct: 68 L 68


>gi|325282344|ref|YP_004254885.1| helix-turn-helix domain-containing protein [Deinococcus
          proteolyticus MRP]
 gi|324314153|gb|ADY25268.1| helix-turn-helix domain protein [Deinococcus proteolyticus MRP]
          Length = 129

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E KL  K++      +  ++S+LE G++  ++D +  LA      +  LL+
Sbjct: 5  ERLRELRSERKLRLKDVSEVAEISVPYLSDLERGRTNPSLDTLQTLAAAYSISVHDLLE 63


>gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM
          9799]
 gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor
          [Ferrimonas balearica DSM 9799]
          Length = 180

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N  R +R +A L+Q+E+  RTG    +IS++E    + ++ ++  +   L   L
Sbjct: 4  GNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSVSPSVASLKKILDGLPISL 58


>gi|306820407|ref|ZP_07454044.1| XRE family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304551570|gb|EFM39524.1| XRE family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 69

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  NN + IRKE   +Q ++    G +++ IS +ETG+        +IL   LD    +
Sbjct: 5  LVLKNNLKEIRKEKGYSQTDLAELVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEE 64

Query: 80 LL 81
          + 
Sbjct: 65 IF 66


>gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL
          F2-515]
          Length = 81

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N+R    LTQ+E+  RT   + +IS+LE   S+ +I+ +  +   L +      
Sbjct: 4  GKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFF 62


>gi|297560997|ref|YP_003679971.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845445|gb|ADH67465.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 187

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R+   L+   +   +G ++  IS +E G++      +  LA  L   L +L+
Sbjct: 9  LASTLRELRRARGLSGGALAELSGVSRGMISRIENGEAQPTASLLGRLAAALGITLSELI 68


>gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 195

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    T K +  R G ++S +S++E  K +  ID +++LA  LD  L  L 
Sbjct: 13 FGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERNKVSPAIDTLLMLADVLDINLEFLF 72

Query: 82 K 82
          +
Sbjct: 73 E 73


>gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810]
 gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810]
          Length = 186

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R    L+  E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 11 LVRQRLRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDEL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|281422929|ref|ZP_06253928.1| transcriptional regulator, PvuIIC [Prevotella copri DSM 18205]
 gi|281403021|gb|EFB33701.1| transcriptional regulator, PvuIIC [Prevotella copri DSM 18205]
          Length = 74

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  R+   ++Q+++    G  +++I  LE  +   ++  ++ +   L   +  L+
Sbjct: 13 FASRVKQRRESLDISQEKLAGIAGLHRTYIGSLERAEKIPSLITIVKITKALQINISDLI 72


>gi|169334830|ref|ZP_02862023.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257568|gb|EDS71534.1| hypothetical protein ANASTE_01236 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 113

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++     +  R + KLTQ+++      + S +S +E G +  ++  ++ +A+ L+  + K
Sbjct: 6  LMMGERLKRQRIKQKLTQEQLAEAVDLSVSHLSHIENGNTKTSLQTVLNIANVLNISIDK 65

Query: 80 LL 81
          +L
Sbjct: 66 IL 67


>gi|260432343|ref|ZP_05786314.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416171|gb|EEX09430.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 198

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +RK   LT  ++  R   +  W+S++E   S  +I ++  +A  L  P+  L 
Sbjct: 20 LGADIRALRKSRGLTLTDVARRLDRSVGWLSQVERDLSEPSISDLRQIAECLGVPMSMLF 79


>gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
          Length = 202

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E  L+  E+  + G +   +S++E G S++ +  +  LA  LD     L+
Sbjct: 19 VGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 78


>gi|229086928|ref|ZP_04219086.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
 gi|228696371|gb|EEL49198.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44]
          Length = 181

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [Lyngbya sp. PCC 8106]
 gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [Lyngbya sp. PCC 8106]
          Length = 377

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + IR    L+Q+++    G ++  IS +E+G+   +    + LA  L   +  L 
Sbjct: 9  NRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQYAPSARIALRLAKALGCQMEDLF 66


>gi|32456040|ref|NP_862207.1| regulatory protein [Enterobacter sp. RFL1396]
 gi|27464466|gb|AAO16093.1| regulatory protein [Enterobacter sp. RFL1396]
          Length = 79

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + IR E  +TQ+++  ++   +++IS +E     + I ++ ++   L+  
Sbjct: 13 IKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVS 63


>gi|6458757|gb|AAF10602.1|AE001954_6 epoxidase, putative [Deinococcus radiodurans R1]
          Length = 161

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R IR++ +LT +++   +G  +S++S LE   +T ++  ++ +   L     +L  
Sbjct: 18 GARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVKVCDALGIRPGELFD 77

Query: 83 P 83
          P
Sbjct: 78 P 78


>gi|294789197|ref|ZP_06754436.1| putative restriction-modification enzyme [Simonsiella muelleri
          ATCC 29453]
 gi|294482938|gb|EFG30626.1| putative restriction-modification enzyme [Simonsiella muelleri
          ATCC 29453]
          Length = 74

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I  NN RN RK   + Q E+       +S++  +E G+  + +D +  ++  L     
Sbjct: 5  RQIIGNNIRNKRKILNIKQDELALLAEIDRSYMGRIERGEVNLTVDKLFQISLILKCEAA 64

Query: 79 KLL 81
          +LL
Sbjct: 65 ELL 67


>gi|241518443|ref|YP_002979071.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240862856|gb|ACS60520.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 90

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R +R    L+Q+ +       +S++  +E G   + +  +   A  L   + 
Sbjct: 4  RQTIGWNLRRLRVAKGLSQERLALEAEIDRSYVGRVERGMENVTVATLEAFARVLSVNVS 63

Query: 79 KLL 81
           L 
Sbjct: 64 ALF 66


>gi|228902888|ref|ZP_04067030.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|228954646|ref|ZP_04116669.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228967431|ref|ZP_04128462.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|229048068|ref|ZP_04193643.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
 gi|229129642|ref|ZP_04258610.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|229192573|ref|ZP_04319534.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|228590880|gb|EEK48738.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|228653759|gb|EEL09629.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4]
 gi|228723312|gb|EEL74682.1| Transcriptional regulator, MerR [Bacillus cereus AH676]
 gi|228792267|gb|EEM39838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228804973|gb|EEM51569.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228856762|gb|EEN01280.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
          Length = 194

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis
          HAW-EB4]
 gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis
          HAW-EB4]
          Length = 182

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +RKE  L+Q+E+  R G   S IS +E    + ++ ++  +   L   L +  
Sbjct: 4  GENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVEFF 62


>gi|167033252|ref|YP_001668483.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859740|gb|ABY98147.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 197

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 28/69 (40%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             LR         +  R+   L   ++    G +Q  +S++E  + + ++D +  L   
Sbjct: 6  QPRLRLEQYLGLQIKRQRQAQSLKLADVARIAGISQGMLSKIENAQVSTSLDTLSRLCDV 65

Query: 73 LDTPLWKLL 81
          L  P+ KL 
Sbjct: 66 LGMPMAKLF 74


>gi|187927014|ref|YP_001893359.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J]
 gi|241665343|ref|YP_002983702.1| XRE family transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728768|gb|ACD29932.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J]
 gi|240867370|gb|ACS65030.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D]
          Length = 198

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+  KL+  E+    G ++S +S++E   +   +  +  LA  L   L   L
Sbjct: 17 VGAKLQALRQARKLSLDELSRHAGVSKSMLSQVERNLANPTVAVLWRLATALGVSLADFL 76

Query: 82 KP 83
           P
Sbjct: 77 SP 78


>gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM
          4184]
 gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM
          4184]
          Length = 516

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    +R+   L+   +    G ++S + E+E  K + +I+ +  +A+ L  P  +L+
Sbjct: 5  LGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVPFGELV 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
           Re1]
 gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 253

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           +      + ++          + IR E K+TQ E+  + G +   I ++E+GK   +I  
Sbjct: 121 KALDVKPENLMAAASFVGYKIKKIRCERKITQAELAEKAGVSTGLIGQIESGKVEPSIKT 180

Query: 66  MIILAHTLDTPL 77
           +  +A  L    
Sbjct: 181 LEKIAAALSLSP 192



 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++R++  +T +++  + G + S++SE+E GK   +++ +  LA  L+     L+
Sbjct: 7  IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELGKKQPSLETIDKLAQALNISREGLI 62



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 IR+E  L+  E+  + G + S++ ++E+G++   +  +  +A  LD     L+
Sbjct: 73  GAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALSTLKSIAKALDVKPENLM 131


>gi|320532621|ref|ZP_08033419.1| putative restriction-modification system control element Bcll
          [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135151|gb|EFW27301.1| putative restriction-modification system control element Bcll
          [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 61

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R++  L+Q+++  RT    S+I ++E G+  +++ N++ +A  LDT    L+
Sbjct: 1  MRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNILRIATALDTDAGGLV 56


>gi|284042761|ref|YP_003393101.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946982|gb|ADB49726.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 182

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
              R +R  A +TQ+E+  R G  ++++  LE G  +   +     LA  LD  +  L
Sbjct: 2  GAMLRQLRTRAGITQRELAARDGLHRNYLGALERGTVANPGLATATRLARALDVSVSVL 60


>gi|255527984|ref|ZP_05394823.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296186285|ref|ZP_06854689.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
 gi|255508314|gb|EET84715.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049086|gb|EFG88516.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
          Length = 184

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +I   N  NIR++  L+  ++   TG ++  ++++E G S   +  +  +A  L+  
Sbjct: 6  LIIGKNLNNIRRQKGLSLDKVAELTGVSKGMLAQIEKGISNPTVTTLWKIATGLNVS 62


>gi|239932598|ref|ZP_04689551.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291440960|ref|ZP_06580350.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
          14672]
 gi|291343855|gb|EFE70811.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
          14672]
          Length = 190

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N R  R E   T   +  R G ++  + ++E  ++  +I  ++ +   L   +  
Sbjct: 9  QSLARNVRRWRTERGFTLDALAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876]
 gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876]
          Length = 277

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|291295432|ref|YP_003506830.1| XRE family transcriptional regulator [Meiothermus ruber DSM 1279]
 gi|290470391|gb|ADD27810.1| transcriptional regulator, XRE family [Meiothermus ruber DSM
          1279]
          Length = 186

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
               +          R  R    LT +++  R+G  +S+IS LE   +  ++ +++ + 
Sbjct: 5  DPSPSVP----IGPRLRAARLAKGLTLEQVAQRSGLDKSFISRLERNATAASVASLLKVC 60

Query: 71 HTLDTPLWKLLKP 83
            LD     L  P
Sbjct: 61 AALDIQPGSLFDP 73


>gi|226526961|ref|YP_002790980.1| transcriptional regulator [Lactobacillus brevis]
 gi|226442553|dbj|BAH56423.1| transcriptional regulator [Lactobacillus brevis]
          Length = 65

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R  RK+  L+Q E+  + G A+  +S LE      ++   + +A+ LDT L  L  P
Sbjct: 3  NKIREYRKKKNLSQAELAEKVGLARQTVSLLENKSYNPSLKVCLNIANVLDTTLDSLFNP 62


>gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134]
 gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134]
          Length = 262

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
 gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
          Length = 183

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R IRK+  L+Q+E+  + G     IS +E  +++ ++ ++  L   +   + +  
Sbjct: 3  VGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRTSPSVASLKSLLDAIPISMAEFF 62


>gi|160944249|ref|ZP_02091478.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium
          prausnitzii M21/2]
 gi|313113217|ref|ZP_07798837.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium cf. prausnitzii KLE1255]
 gi|158444431|gb|EDP21435.1| hypothetical protein FAEPRAM212_01758 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103725|emb|CBL01269.1| transcriptional regulator, XRE family [Faecalibacterium
          prausnitzii SL3/3]
 gi|310624459|gb|EFQ07794.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 93

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA+  E +       + RKE+ LTQK++  RTG AQ+ IS+LE G +  ++  +  LA  
Sbjct: 22 DALQPE-LTIAQAMIDARKESGLTQKQLSERTGIAQADISKLERGNANPSLRTLQRLAAG 80

Query: 73 LDT 75
          +  
Sbjct: 81 MGM 83


>gi|158423697|ref|YP_001524989.1| XRE family-like protein [Azorhizobium caulinodans ORS 571]
 gi|158330586|dbj|BAF88071.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans
           ORS 571]
          Length = 231

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
                  A   +R  F ++ R  R    L+ + + +  G +   +S++E G S+ ++  +
Sbjct: 37  ASTEDEAASEHDRA-FGSSIREARLARGLSLQRVADAAGLSVGLLSQVERGISSPSVRVL 95

Query: 67  IILAHTLDTPLWKLL 81
             +   L   +  L 
Sbjct: 96  RAICGALGVTVQSLF 110


>gi|330825889|ref|YP_004389192.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329311261|gb|AEB85676.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 81

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H +D +L          R  R+   ++Q+E+ +R+   + ++S +E G     I ++  +
Sbjct: 8  HANDPVLIA---LGGAIRRSRRARGISQEELAHRSVIDRFYMSSIERGGQNPGIVSIARI 64

Query: 70 AHTLDTPLWKLL 81
          A  ++  + +L+
Sbjct: 65 AKAMEMSMTELM 76


>gi|310827713|ref|YP_003960070.1| transcriptional regulator [Eubacterium limosum KIST612]
 gi|308739447|gb|ADO37107.1| transcriptional regulator [Eubacterium limosum KIST612]
          Length = 68

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N  + IRKE KL+Q  +    G +++ IS +ETG+        +IL   LD   
Sbjct: 3  EELILKNRLKEIRKEKKLSQSALAELVGVSRNTISSIETGQFNPTAKLALILCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|254500741|ref|ZP_05112892.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222436812|gb|EEE43491.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 186

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R+   L+ + +   +G ++S +S++E G+S   +  ++ L   L+     LL
Sbjct: 12 ERLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNVDFAGLL 69


>gi|153208917|ref|ZP_01947136.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU
          Goat Q177']
 gi|165923365|ref|ZP_02219702.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
          334]
 gi|212218472|ref|YP_002305259.1| transcriptional regulator [Coxiella burnetii CbuK_Q154]
 gi|120575638|gb|EAX32262.1| DNA-binding protein/cupin domain protein [Coxiella burnetii 'MSU
          Goat Q177']
 gi|165916691|gb|EDR35295.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
          334]
 gi|212012734|gb|ACJ20114.1| transcriptional regulator [Coxiella burnetii CbuK_Q154]
          Length = 183

 Score = 54.2 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R+E +++ + + +  G ++S I ++E+ +    +D    LA  L   L ++L
Sbjct: 4  FAERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQPTLDVAGKLAVALGKTLSEML 63


>gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196]
 gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196]
          Length = 242

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 ++ RK  K+TQKE+  R G   + IS  E G +    D +  +A+ LD  +  
Sbjct: 21 KYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDALFAIANALDVSIND 80

Query: 80 LL 81
          L 
Sbjct: 81 LF 82


>gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753]
 gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753]
          Length = 222

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R+ A L+Q     + G +QS +   E G    N   M  +A      +  L
Sbjct: 16 VFRIRLKELRENAGLSQYGFAEKIGISQSTVGNWEAGSREPNFKTMERIADFFGVSVDYL 75

Query: 81 L 81
          L
Sbjct: 76 L 76


>gi|313906487|ref|ZP_07839821.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313468677|gb|EFR64045.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 101

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           +R + ++TQKE+  + G  Q+ IS LE G +   I+++  +A  L   L 
Sbjct: 42 ELRHDNQMTQKELAVKCGITQANISNLENGTTRPTIESLKKIADALGMRLV 92


>gi|307269275|ref|ZP_07550628.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX4248]
 gi|306514372|gb|EFM82934.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX4248]
          Length = 91

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 4  RKRDEPHLSDA--ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +K++    +    +  +R+        +RKE   +Q+E+  R G  QS I+ +E G   +
Sbjct: 11 KKKNSSSFAKEFELESQRLEVAVALAQLRKELGFSQRELAERVGKPQSTIARIENGTVNV 70

Query: 62 NIDNMIILAHTLDTPL 77
          +   +  +A  +   L
Sbjct: 71 SFKVLYEIAQGVGKEL 86


>gi|163856318|ref|YP_001630616.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260046|emb|CAP42347.1| predicted transcriptional regulator [Bordetella petrii]
          Length = 219

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+  L+  ++    G +   +S++E G S+ ++  + +LA      +  LL
Sbjct: 32 LGQQLRQLRKQHGLSLMQVAKACGISVGLLSQVERGLSSPSVKIVTLLAGQFGVSVDSLL 91

Query: 82 K 82
          +
Sbjct: 92 R 92


>gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena
          variabilis ATCC 29413]
 gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family
          [Anabaena variabilis ATCC 29413]
          Length = 376

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN ++IR    ++Q+++ N  G  +  IS +E+G+   ++   + LA  L   +  L 
Sbjct: 9  NNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYAPSVAITLRLAKALGCQVENLF 66


>gi|134287468|ref|YP_001109635.1| putative phage repressor [Burkholderia vietnamiensis G4]
 gi|134131890|gb|ABO60584.1| putative phage repressor [Burkholderia vietnamiensis G4]
          Length = 235

 Score = 53.8 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLW 78
                  R E  ++QKE+  R G  Q  IS LE GKS  +  ++  LA  L   PLW
Sbjct: 8  VGARVSARRTELGISQKELARRVGLTQPTISALEKGKSNTS-GSIASLAKALGVVPLW 64


>gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia
          gladioli BSR3]
 gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia
          gladioli BSR3]
          Length = 191

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 33/65 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D  +          R +R+  KLT  E+    G ++ ++S++E G++T ++ +++ +A  
Sbjct: 6  DESMSASAAIGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRATPSLQSLVGIARA 65

Query: 73 LDTPL 77
          L   +
Sbjct: 66 LGVSM 70


>gi|315453658|ref|YP_004073928.1| hypothetical protein HFELIS_12540 [Helicobacter felis ATCC 49179]
 gi|315132710|emb|CBY83338.1| putative uncharacterized protein [Helicobacter felis ATCC 49179]
          Length = 206

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPL 77
          +     + +R    LTQ+E+  + G +   I   E+  KS I +D +  LA+ L+T L
Sbjct: 1  MLKEKLKQLRNANNLTQEELALKCGVSLQSIKRYESEQKSNITLDTLEKLANALNTDL 58


>gi|300119183|ref|ZP_07056880.1| MerR family transcriptional regulator [Bacillus cereus SJ1]
 gi|298723403|gb|EFI64148.1| MerR family transcriptional regulator [Bacillus cereus SJ1]
          Length = 181

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|182416543|ref|ZP_02947969.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237668113|ref|ZP_04528097.1| DNA-biding phage protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182379615|gb|EDT77097.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237656461|gb|EEP54017.1| DNA-biding phage protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 84

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  ++      RKE  LTQ+++      +QS+ISE+E G  + ++  +  ++  L     
Sbjct: 3  KKDYIIKLLEYRKENNLTQQQLSELINMSQSYISEIEQGIKSPSVKTLYDISSALKICPH 62

Query: 79 KLL 81
           LL
Sbjct: 63 VLL 65


>gi|111021488|ref|YP_704460.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110821018|gb|ABG96302.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 187

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R+ R +A LT +++  +TG +Q ++S+ E G S  ++ N+  +A  L T    LL+
Sbjct: 13 GTAIRSARHDAGLTLRDVAAKTGLSQPFLSQAENGHSVPSVMNLHRVAQVLGTTAHALLE 72


>gi|119716960|ref|YP_923925.1| helix-turn-helix domain-containing protein [Nocardioides sp.
          JS614]
 gi|119537621|gb|ABL82238.1| helix-turn-helix domain protein [Nocardioides sp. JS614]
          Length = 104

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
              P  S+     R       R  R+ A  T  ++    G +  ++SE+E G+   + +
Sbjct: 10 PPQRPAASEPEPLWREAVGYELREERRTAGRTLADVAGAAGVSTQYLSEVERGRKEPSSE 69

Query: 65 NMIILAHTLDTPLWKL 80
           +  +A  L   L  L
Sbjct: 70 VLGAVAGALGLRLVDL 85


>gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 213

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R  A ++Q+++   +G     +S +ETG+S+ ++ ++  +   L   + +  
Sbjct: 27 VGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGVTMSEFF 86

Query: 82 KP 83
          +P
Sbjct: 87 EP 88


>gi|268608481|ref|ZP_06142208.1| hypothetical protein RflaF_03150 [Ruminococcus flavefaciens FD-1]
 gi|268610136|ref|ZP_06143863.1| hypothetical protein RflaF_11644 [Ruminococcus flavefaciens FD-1]
 gi|268611602|ref|ZP_06145329.1| hypothetical protein RflaF_19116 [Ruminococcus flavefaciens FD-1]
          Length = 117

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  +      N    RKE  L Q E+         ++S +ET +S  +++  + + + L+
Sbjct: 7  VELDYKQVGLNIARRRKELHLKQVEVCELADLNDKYLSCIETARSIPSLEVFLRICNALN 66

Query: 75 TPLWKLL 81
          T    LL
Sbjct: 67 TTPDHLL 73


>gi|258651682|ref|YP_003200838.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258554907|gb|ACV77849.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 117

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  R+ A ++Q+++   +G + S++S++E G+   + + +  +A  L  P   
Sbjct: 9  EAFGAFVKAQRQLANISQRQLAKASGMSDSYLSQIERGQYKPSAEVLRGIAGALHIPPAV 68

Query: 80 LL 81
          L 
Sbjct: 69 LF 70


>gi|188581450|ref|YP_001924895.1| XRE family transcriptional regulator [Methylobacterium populi
          BJ001]
 gi|179344948|gb|ACB80360.1| transcriptional regulator, XRE family [Methylobacterium populi
          BJ001]
          Length = 201

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           ++ ER       +  R +R+E  L+  ++ +  G +   IS++E G  + ++ ++  +A
Sbjct: 9  PVVEERPLEKALGHQVRVLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIA 68

Query: 71 HTLDTPLWKLL 81
            L+ P+  L 
Sbjct: 69 SALNVPITALF 79


>gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens
          DSM 3043]
 gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter
          salexigens DSM 3043]
          Length = 178

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + V N R +R+    +   +  R   ++S +S+LE G     I+ +  LA+TL     +L
Sbjct: 7  VIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSEL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 104

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  RK A LTQ E+  +TGF    IS  ETG  T +++ + +LA  L   L
Sbjct: 6  LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKL 61


>gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355]
          Length = 194

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK   LT  E+  R+G +Q+ IS++E G S+ +   +  LA+ ++  L KL 
Sbjct: 15 ARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRLANAMNITLSKLF 73


>gi|229157978|ref|ZP_04286049.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
 gi|228625431|gb|EEK82187.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342]
          Length = 181

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|168213144|ref|ZP_02638769.1| transcriptional regulator [Clostridium perfringens CPE str.
          F4969]
 gi|170715336|gb|EDT27518.1| transcriptional regulator [Clostridium perfringens CPE str.
          F4969]
          Length = 79

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R+  +L+  E+  +TG ++S++SE+E G+   ++  +  +  TL+     L+
Sbjct: 7  NIKKYRELKELSLGELAKKTGLSKSYLSEIENGRKICSLKTLYKIGDTLNICPILLI 63


>gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842]
 gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842]
          Length = 107

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +    I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|148358351|ref|YP_001249558.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby]
 gi|148280124|gb|ABQ54212.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby]
          Length = 86

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+ RKE   +Q++  ++    ++++  +E G+  + I  +I +A  L   +  L+
Sbjct: 17 GKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALILGVEVATLI 75


>gi|238924797|ref|YP_002938313.1| hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656]
 gi|238876472|gb|ACR76179.1| Hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656]
 gi|291526055|emb|CBK91642.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
          Length = 108

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  RKE ++ Q E+  +   + + +S +E G+   ++D  I +   L+     LL
Sbjct: 2  GNRIKIRRKELRIKQAELAEKLNISNNHMSSIENGRQKPSLDIFIRICDLLNVTPDYLL 60


>gi|168699329|ref|ZP_02731606.1| DNA-binding protein, putative [Gemmata obscuriglobus UQM 2246]
          Length = 89

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R  F    R +R +  LTQ ++  R G     +++LE G+       +I LA  L  
Sbjct: 12 RTGFGKRLRELRIDKNLTQSQLGERAGMMYQDVAKLERGEREPMWATVIRLADALGV 68


>gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 104

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L     
Sbjct: 3  RSALGFALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDALMEFAQVLGVKPK 62

Query: 79 KLL 81
             
Sbjct: 63 DFF 65


>gi|29654276|ref|NP_819968.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
          493]
 gi|161830755|ref|YP_001596754.1| DNA-binding protein [Coxiella burnetii RSA 331]
 gi|212212602|ref|YP_002303538.1| transcriptional regulator [Coxiella burnetii CbuG_Q212]
 gi|29541543|gb|AAO90482.1| transcriptional regulator [Coxiella burnetii RSA 493]
 gi|161762622|gb|ABX78264.1| DNA-binding protein/cupin domain protein [Coxiella burnetii RSA
          331]
 gi|212011012|gb|ACJ18393.1| transcriptional regulator [Coxiella burnetii CbuG_Q212]
          Length = 183

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R+E +++ + + +  G ++S I ++E+ +    +D    LA  L   L ++ 
Sbjct: 4  FAERLKRLRQERQMSMQALADAAGVSKSMICKIESTEVQPTLDVAGKLAVALGKTLSEMF 63


>gi|84685724|ref|ZP_01013621.1| probable transcriptional regulator [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84666390|gb|EAQ12863.1| probable transcriptional regulator [Rhodobacterales bacterium
          HTCC2654]
          Length = 201

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R++RK   +T  ++    G +  W+S++E G++T ++ ++  LA  L   +    
Sbjct: 22 VGEDIRSLRKTRAMTLAQLAGAAGRSVGWLSQVERGRTTPSVRDLEQLADLLGVNISFFF 81

Query: 82 K 82
          +
Sbjct: 82 R 82


>gi|332298497|ref|YP_004440419.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332181600|gb|AEE17288.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 115

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R E+ ++Q+E+ +  G + + +S +ETG + +++   + +A  L      LL
Sbjct: 14 GRRIKKYRWESNISQEELADAVGVSTTHMSHIETGGTKLSLGVFVKIADALQISADLLL 72


>gi|303246008|ref|ZP_07332290.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
 gi|302492791|gb|EFL52659.1| transcriptional regulator, XRE family [Desulfovibrio
          fructosovorans JJ]
          Length = 87

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RKEA L Q E+  R G+ QS++S+ E+G+  I++  +  +   L   L + +
Sbjct: 29 LRKEAGLRQTELAARLGYPQSYVSKYESGQRRIDLIELEAICQALGITLLEFV 81


>gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis
          BCW-1]
          Length = 199

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+    T  ++   TG + S +S LE+G+    ++ ++ LA     PL +L+
Sbjct: 13 VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQRKPTLELLLPLAKAYQVPLDELV 72


>gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909]
          Length = 330

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E          +RK   ++Q+E+ N+ G  +  IS  E G +  +++ ++ LA   +T L
Sbjct: 2  EHHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL 61

Query: 78 WKLL 81
            L+
Sbjct: 62 DGLI 65


>gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803]
 gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803]
          Length = 145

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +I+N+I+L+   +  L +
Sbjct: 1  MSLGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKSCPDIENLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|228477794|ref|ZP_04062422.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228250486|gb|EEK09700.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 66

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    LTQ+ + +  G ++  IS +E G     I+  I +  TLD  L +L 
Sbjct: 5  KMKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLF 61


>gi|183598237|ref|ZP_02959730.1| hypothetical protein PROSTU_01621 [Providencia stuartii ATCC
          25827]
 gi|188020406|gb|EDU58446.1| hypothetical protein PROSTU_01621 [Providencia stuartii ATCC
          25827]
          Length = 108

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   + +  R+E  L+  EI  +   +Q  IS  E G + I++D +      LD     
Sbjct: 19 KIVGASMKRARREKGLSGYEIAVKLNISQQQISRYERGINHISVDTLFNFILALDISYEI 78

Query: 80 LLK 82
          L++
Sbjct: 79 LIQ 81


>gi|164688731|ref|ZP_02212759.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM
           16795]
 gi|164602207|gb|EDQ95672.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM
           16795]
          Length = 115

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       +  R   K+TQ+ +    G ++  +S+ E G S  +  N++ LA        
Sbjct: 49  RKSLGEVLKENRIRCKMTQEFVSESIGVSRQAVSKWENGASDPSTSNLLALAKLYGISAE 108

Query: 79  KLLK 82
            LLK
Sbjct: 109 DLLK 112


>gi|323126263|gb|ADX23560.1| DNA-binding protein [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 124

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R + +L+Q  +  +   ++  IS+ E G +  ++DN++ L    D  L +L+
Sbjct: 4  VAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTIPDLDNLVRLTEIFDVSLDELV 63


>gi|307299363|ref|ZP_07579164.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306915159|gb|EFN45545.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 183

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 36/60 (60%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R++R+  K++ K++ + +G + S IS++E GK + +++ +  + + +   +  L++
Sbjct: 8  GNKLRSLRQARKISIKKLADTSGVSSSLISQIEHGKVSPSLNTLKKILNAMGETVISLVQ 67


>gi|262201416|ref|YP_003272624.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262084763|gb|ACY20731.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 93

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            +L E   F    R  R+E  L+Q+      G   + + ++E G+ ++ ++N++ +A  
Sbjct: 15 KPVLVE---FGRRIRARREELGLSQEAAAVSIGIHWTQLGKVERGQRSVRVENIVKIAAG 71

Query: 73 LDTPLWKLL 81
          L T    LL
Sbjct: 72 LSTTPGALL 80


>gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif,
          XRE-like) [Cupriavidus metallidurans CH34]
          Length = 101

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               +  R    ++Q ++  +   + S++S LE  K    +  M  +AH L  P
Sbjct: 3  VGQAIKLCRTRRGISQADLARQAECSVSYLSMLENNKRDPTLSTMTKIAHALHMP 57


>gi|30264432|ref|NP_846809.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47529886|ref|YP_021235.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187254|ref|YP_030506.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49478619|ref|YP_038413.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52141145|ref|YP_085685.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65321730|ref|ZP_00394689.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|190566894|ref|ZP_03019810.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034394|ref|ZP_03101803.1| DNA-binding protein [Bacillus cereus W]
 gi|196039275|ref|ZP_03106581.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196044751|ref|ZP_03111985.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|218905557|ref|YP_002453391.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225866344|ref|YP_002751722.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227817141|ref|YP_002817150.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228916995|ref|ZP_04080555.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228935683|ref|ZP_04098496.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228948076|ref|ZP_04110360.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229093433|ref|ZP_04224536.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|229123903|ref|ZP_04253095.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|229186602|ref|ZP_04313763.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
 gi|229602882|ref|YP_002868651.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254721950|ref|ZP_05183739.1| MerR family transcriptional regulator [Bacillus anthracis str.
          A1055]
 gi|254736465|ref|ZP_05194171.1| MerR family transcriptional regulator [Bacillus anthracis str.
          Western North America USA6153]
 gi|254750941|ref|ZP_05202980.1| MerR family transcriptional regulator [Bacillus anthracis str.
          Vollum]
 gi|254757730|ref|ZP_05209757.1| MerR family transcriptional regulator [Bacillus anthracis str.
          Australia 94]
 gi|301055871|ref|YP_003794082.1| XRE family transcriptional regulator [Bacillus anthracis CI]
 gi|30259090|gb|AAP28295.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47505034|gb|AAT33710.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181181|gb|AAT56557.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49330175|gb|AAT60821.1| probable transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|51974614|gb|AAU16164.1| probable transcriptional regulator [Bacillus cereus E33L]
 gi|190561885|gb|EDV15854.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992936|gb|EDX56895.1| DNA-binding protein [Bacillus cereus W]
 gi|196024239|gb|EDX62912.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196029902|gb|EDX68503.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218537657|gb|ACK90055.1| DNA-binding protein [Bacillus cereus AH820]
 gi|225788250|gb|ACO28467.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227003894|gb|ACP13637.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228596861|gb|EEK54520.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1]
 gi|228659205|gb|EEL14853.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201]
 gi|228689904|gb|EEL43708.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42]
 gi|228811434|gb|EEM57771.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228823921|gb|EEM69740.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228842602|gb|EEM87690.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229267290|gb|ACQ48927.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|300378040|gb|ADK06944.1| transcriptional regulator, XRE family [Bacillus cereus biovar
          anthracis str. CI]
 gi|324328264|gb|ADY23524.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 181

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|257438000|ref|ZP_05613755.1| putative toxin-antitoxin system, toxin component
          [Faecalibacterium prausnitzii A2-165]
 gi|257199660|gb|EEU97944.1| putative toxin-antitoxin system, toxin component
          [Faecalibacterium prausnitzii A2-165]
          Length = 96

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F     ++R    +TQ+E+  R G  ++  +S +E G+ + +ID +I L+  L      L
Sbjct: 8  FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTDYL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|255523840|ref|ZP_05390804.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255512402|gb|EET88678.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 190

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               + +R    LT KE+  +T  +  ++S+LE G + + ID++  +A  LD  L
Sbjct: 5  VGKKIKELRTNKNLTLKELSTKTNLSIGFLSQLERGLTAVAIDSLNNIAKALDVNL 60


>gi|291087268|ref|ZP_06571878.1| putative toxin-antitoxin system, toxin component [Clostridium sp.
          M62/1]
 gi|291075626|gb|EFE12990.1| putative toxin-antitoxin system, toxin component [Clostridium sp.
          M62/1]
          Length = 96

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F     ++R    +TQ+E+  R G  ++  +S +E G+ + +ID +I L+  L      L
Sbjct: 8  FGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTDYL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|163737159|ref|ZP_02144577.1| transcriptional regulator, XRE family protein [Phaeobacter
          gallaeciensis BS107]
 gi|163740428|ref|ZP_02147822.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161386286|gb|EDQ10661.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161389763|gb|EDQ14114.1| transcriptional regulator, XRE family protein [Phaeobacter
          gallaeciensis BS107]
          Length = 184

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R+IR++A L+  +    TG +++ + ++E G+S+  I  +  +A     PL  L+
Sbjct: 9  NLRDIRQDAGLSLSKAAEVTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALI 65


>gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016]
 gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 179

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F    R +R+E  ++ +++  R   +   IS++E   +  ++  +  +A  L+  +
Sbjct: 3  FGLKIRKLRQEKSISIEQLAERAKLSTGLISQVERNITGPSVTTLWKIAKALNVSI 58


>gi|119899299|ref|YP_934512.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72]
 gi|119671712|emb|CAL95625.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72]
          Length = 200

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 29/69 (42%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +            R +R +  LT  ++    G ++  +S++ETG +   +D +  +A +
Sbjct: 7  KSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARS 66

Query: 73 LDTPLWKLL 81
          L   +  L 
Sbjct: 67 LGVAMSALF 75


>gi|28871762|ref|NP_794381.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|28855014|gb|AAO58076.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 94

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R+IRK+  LTQ++    +  +++++S LE G     ID +  LA  L      L+
Sbjct: 7  FGQVLRDIRKQRGLTQEDFSEVS--SRTYLSTLERGLKCPTIDKVTQLAEVLSVHPATLI 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|127512198|ref|YP_001093395.1| XRE family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637493|gb|ABO23136.1| transcriptional regulator, XRE family [Shewanella loihica PV-4]
          Length = 127

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +      +IR+E  + Q ++  R G +Q+  S LE GK+T +ID + ++A  L     +L
Sbjct: 13 VMGAVVSSIRREKGIEQSDVAARMGLSQASYSRLEGGKATYSIDQVFLVAEALQVEPAEL 72

Query: 81 LK 82
           +
Sbjct: 73 FQ 74


>gi|42783489|ref|NP_980736.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47566547|ref|ZP_00237369.1| transcriptional regulator, merR family [Bacillus cereus G9241]
 gi|206976014|ref|ZP_03236924.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217961850|ref|YP_002340420.1| DNA-binding protein [Bacillus cereus AH187]
 gi|222097805|ref|YP_002531862.1| DNA-binding protein [Bacillus cereus Q1]
 gi|42739418|gb|AAS43344.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47556577|gb|EAL14909.1| transcriptional regulator, merR family [Bacillus cereus G9241]
 gi|206745766|gb|EDZ57163.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217066022|gb|ACJ80272.1| DNA-binding protein [Bacillus cereus AH187]
 gi|221241863|gb|ACM14573.1| DNA-binding protein [Bacillus cereus Q1]
          Length = 181

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 170

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|226951291|ref|ZP_03821755.1| Cro/CI family transcriptional regulator [Acinetobacter sp. ATCC
          27244]
 gi|226837964|gb|EEH70347.1| Cro/CI family transcriptional regulator [Acinetobacter sp. ATCC
          27244]
          Length = 68

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     RN R +  +TQ+ +  + G  +S++  +E G+    ++ +  +A  L+    +L
Sbjct: 7  VIGQLIRNRRTQRSITQEALALQCGIDRSYMGRIERGEVNFTVEKLYEIASALEINAKEL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|167924579|ref|ZP_02511670.1| transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei BCC215]
          Length = 81

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R  R E  ++Q+ + N     +S + ++E G+  + + N++ +A  L      LL
Sbjct: 17 VGRSIRARRLELDISQEALANIADIDRSHMGKIERGERNVTLLNLVKIARALSCRPSDLL 76


>gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 330

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E          +RK   ++Q+E+ N+ G  +  IS  E G +  +++ ++ LA   +T L
Sbjct: 2  EHHQLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDL 61

Query: 78 WKLL 81
            L+
Sbjct: 62 DGLM 65


>gi|318057395|ref|ZP_07976118.1| hypothetical protein SSA3_05613 [Streptomyces sp. SA3_actG]
 gi|318076536|ref|ZP_07983868.1| hypothetical protein SSA3_07397 [Streptomyces sp. SA3_actF]
          Length = 77

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L +R    +  R  R EA +TQ+ +  RTG  +  I   E G  +  +D+++++A  L 
Sbjct: 10 VLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTEGGTHSTLLDHLLLIARALG 69

Query: 75 TPLWKLLK 82
           PL  L++
Sbjct: 70 RPLADLVR 77


>gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28]
 gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28]
          Length = 149

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+  + +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18]
 gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29]
 gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3]
 gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3]
 gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29]
 gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18]
          Length = 149

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+  + +Q+++  + G  +  + + E  KS  +IDN+I+L+   +  L +
Sbjct: 1  MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|229175036|ref|ZP_04302554.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
 gi|228608404|gb|EEK65708.1| Transcriptional regulator, MerR [Bacillus cereus MM3]
          Length = 181

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 112

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +     + +R     TQ++I +R G ++   + +E G ++I +D +  +A  LD 
Sbjct: 5  ELLGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDV 60


>gi|198276387|ref|ZP_03208918.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135]
 gi|198270829|gb|EDY95099.1| hypothetical protein BACPLE_02582 [Bacteroides plebeius DSM 17135]
          Length = 120

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +    R  RKE  +TQKE+  R G  +++I+ +E G++ + + + I +A  L   L
Sbjct: 58  YGEILRERRKELGMTQKELAERVGRERTYINRIERGETDLQLSSFIRIAEALGIML 113


>gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp.
          NAS-14.1]
 gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp.
          NAS-14.1]
          Length = 183

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+IR+E  L+Q+E+  + G     IS +E  K++ ++ ++  L   +   + +  
Sbjct: 4  GQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAEFF 62


>gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea
          P4]
 gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea
          P4]
          Length = 195

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+   +T  E+ ++TG + S +S LE+G+    ++ ++ LA      L  L+
Sbjct: 12 VGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQRRPTLELLLPLARAHGVTLDHLV 71


>gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 114

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R +  LTQ+++  +   + S++ ++E G   ++++ ++ LA+ L   +  
Sbjct: 4  KALGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERGDRVLSLETLVRLANELSISVDY 63

Query: 80 LLK 82
          L++
Sbjct: 64 LIQ 66


>gi|239942360|ref|ZP_04694297.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          15998]
 gi|239988825|ref|ZP_04709489.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          11379]
          Length = 167

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ + TG +  ++S++E G    + D +  +A  L      L
Sbjct: 9  LGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67


>gi|228950623|ref|ZP_04112758.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229067839|ref|ZP_04201157.1| Transcriptional regulator Xre [Bacillus cereus F65185]
 gi|229077365|ref|ZP_04210032.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2]
 gi|229176675|ref|ZP_04304080.1| Transcriptional regulator Xre [Bacillus cereus 172560W]
 gi|229188360|ref|ZP_04315409.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876]
 gi|228595159|gb|EEK52929.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876]
 gi|228606842|gb|EEK64258.1| Transcriptional regulator Xre [Bacillus cereus 172560W]
 gi|228705944|gb|EEL58263.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2]
 gi|228715323|gb|EEL67181.1| Transcriptional regulator Xre [Bacillus cereus F65185]
 gi|228809098|gb|EEM55582.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 82

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L+  +
Sbjct: 17 EAEKWGRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 76

Query: 78 WKLL 81
           +L+
Sbjct: 77 EELM 80


>gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC
          49626]
 gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC
          49626]
          Length = 236

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++  + G  +  +S  ETG +  ++D ++ L+      L ++L
Sbjct: 7  GKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSNMPDLDILMELSDFYAVDLREIL 65


>gi|209886139|ref|YP_002289996.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
 gi|209874335|gb|ACI94131.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
          Length = 485

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
               R +F    FR +RK+  L+Q +I    G + S+I+ +E  +  +    ++ LA T
Sbjct: 4  PTETGRKLFVGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAET 63

Query: 73 LDTPLWKL 80
           D  L  L
Sbjct: 64 YDLDLRDL 71


>gi|42779243|ref|NP_976490.1| hypothetical protein BCE_0162 [Bacillus cereus ATCC 10987]
 gi|42735158|gb|AAS39098.1| Unknown-related protein [Bacillus cereus ATCC 10987]
          Length = 64

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + IR E  +TQ E+   T  ++  I  +E G    +++  I +  TL   L  L 
Sbjct: 4  KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEQGAYNPSLNLCIKICQTLGVTLNDLF 60


>gi|319783030|ref|YP_004142506.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168918|gb|ADV12456.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 187

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  +   + R +RK   LT  EI  + G +  W+S++E G ST ++ ++   A     P
Sbjct: 4  PDERVLAGDIRALRKARGLTLAEIGLKLGRSVGWVSQVERGLSTPSLGDLRAFAELFGVP 63

Query: 77 L 77
          +
Sbjct: 64 I 64


>gi|255283609|ref|ZP_05348164.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255265871|gb|EET59076.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 111

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++AK+TQ+++  + G + +++  +E    T  ++ +I + + L      +L
Sbjct: 10 GRRIQKCREDAKMTQEQLAEKVGISWNYLGAIERETKTPKLETLIKIVNALGVSADDVL 68


>gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus]
 gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus]
          Length = 82

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I +NN ++ RKE   +Q+E+ N+    +  IS +E GK    I   I +A  L   L
Sbjct: 10 EFIIMINNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDL 69

Query: 78 WKLL 81
           KL 
Sbjct: 70 NKLF 73


>gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM
          16795]
 gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM
          16795]
          Length = 179

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  +++R E +LTQ+E+ NR   ++ +IS+LE   ++ +I  +I +   L T L +  
Sbjct: 4  GSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLREFF 62


>gi|89054537|ref|YP_509988.1| XRE family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864086|gb|ABD54963.1| transcriptional regulator, XRE family with cupin sensor
          [Jannaschia sp. CCS1]
          Length = 205

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  RK+  LT + + +  G +  ++S++E G++T ++  +  +A  L   L
Sbjct: 16 IRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVEL 67


>gi|260426928|ref|ZP_05780907.1| transcriptional regulator, XRE family with cupin sensor
          [Citreicella sp. SE45]
 gi|260421420|gb|EEX14671.1| transcriptional regulator, XRE family with cupin sensor
          [Citreicella sp. SE45]
          Length = 189

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R+   L+   +   +G ++S +S++E G+S   +  +  L   L      LL
Sbjct: 16 RLKDARQAKGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLL 72


>gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 211

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    + +  +   LD    +LL
Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70


>gi|149202477|ref|ZP_01879449.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
 gi|149143759|gb|EDM31793.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
          Length = 215

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 2  PRRKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
          P +          +  ER            R  RK+  +T  E+ N T  +   +S++E 
Sbjct: 6  PAKLVKLTQDPHKLRDEREKVLEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIEN 65

Query: 57 GKSTINIDNMIILAHTLDTPLWKLLK 82
          G ++ ++  +  LAH L  PL    K
Sbjct: 66 GNTSPSLTTLQTLAHALSVPLTAFFK 91


>gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 204

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               R +R++  LT   +   TG +   +S++E G S  ++  + +LA  L  
Sbjct: 24 LGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSEPSVKALHLLASALGV 77


>gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family
          [Bacillus tusciae DSM 2912]
 gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family
          [Bacillus tusciae DSM 2912]
          Length = 392

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK    +Q+ + +R G ++ +I  LE G+S  ++   + LA  L T +  L  
Sbjct: 13 GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALFD 72

Query: 83 P 83
          P
Sbjct: 73 P 73


>gi|255282774|ref|ZP_05347329.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255266795|gb|EET60000.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 147

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + IR E  LTQ+E+  R    +  +S  E G +T NI+ +  ++   D  +  LL
Sbjct: 7  LKKIRIENSLTQEEMAERLAVTRQAVSRWENGDATPNIETLKQISTAFDVSINTLL 62


>gi|24378683|ref|NP_720638.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|290579667|ref|YP_003484059.1| putative transcriptional regulator [Streptococcus mutans NN2025]
 gi|24376546|gb|AAN57944.1|AE014868_6 putative transcriptional regulator [Streptococcus mutans UA159]
 gi|254996566|dbj|BAH87167.1| putative transcriptional regulator [Streptococcus mutans NN2025]
          Length = 64

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+ + +  G ++  I+ +E G     I+  I +   LD  L +L 
Sbjct: 5  RLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIKICKALDKSLDELF 61


>gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 209

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  +      +D  + ER+      R++R     T   +  R G ++S IS +E G ++
Sbjct: 1  MPEYEDPPTADTDTGINERI--ARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAAS 58

Query: 61 INIDNMIILAHTLDTPLWKLL 81
               +  LA  L   L  L 
Sbjct: 59 PTAVVLDKLAAGLGVSLASLF 79


>gi|77408023|ref|ZP_00784772.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77413855|ref|ZP_00790033.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77160095|gb|EAO71228.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77173385|gb|EAO76505.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 104

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R   KL+QK+I  +   +Q   ++ E+GK++ ++  +  +A+  +  + +L
Sbjct: 1  MFSKKLKELRINNKLSQKQIAEQMNISQQAYAKWESGKNSPSLATLEKVANFFNLSIEEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|313113184|ref|ZP_07798810.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310624523|gb|EFQ07852.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 270

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 8  EPHLSDAILRE--RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
            H  D  + E  +  F +    +R+E  +TQKE+      +   +S+ E G S  +I  
Sbjct: 8  LAHKEDKTMYELNKTAFGSFLAQLRREKGMTQKELAACLYVSDKAVSKWERGLSVPDISL 67

Query: 66 MIILAHTLDTPLWKLL 81
          ++ LA  L+  + +LL
Sbjct: 68 LVPLAEQLNVTVAELL 83


>gi|294630087|ref|ZP_06708647.1| PbsX family transcriptional regulator [Streptomyces sp. e14]
 gi|292833420|gb|EFF91769.1| PbsX family transcriptional regulator [Streptomyces sp. e14]
          Length = 230

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 19 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 77


>gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004]
 gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004]
          Length = 121

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R++  L+Q E+        + I   E G S    D +  LA  LD     LL
Sbjct: 9  FAQRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVLDVTSDYLL 68

Query: 82 K 82
          +
Sbjct: 69 E 69


>gi|229032011|ref|ZP_04187995.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
 gi|228729317|gb|EEL80310.1| Transcriptional regulator, MerR [Bacillus cereus AH1271]
          Length = 181

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|229098833|ref|ZP_04229770.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
 gi|229104994|ref|ZP_04235649.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|229117859|ref|ZP_04247222.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228665591|gb|EEL21070.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3]
 gi|228678422|gb|EEL32644.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|228684581|gb|EEL38522.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
          Length = 194

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM
          13275]
 gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM
          13275]
          Length = 118

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   L+Q+E+ N  G ++  IS+ E G+S  +   +++L+   +  L KL+
Sbjct: 3  FNEKLIELRKAKGLSQEELGNELGVSRQTISKWELGQSYPDFQKLVLLSDFFNISLDKLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|167750339|ref|ZP_02422466.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702]
 gi|167656699|gb|EDS00829.1| hypothetical protein EUBSIR_01313 [Eubacterium siraeum DSM 15702]
          Length = 93

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA+  E  +      + RK   +TQK +  +TG AQ  IS+LE G S  ++  +  LA  
Sbjct: 23 DALEPEYALI-RAIIDARKSKGITQKTLSEKTGIAQGDISKLENGNSNPSLRTLCRLAAG 81

Query: 73 LDTPLWKLLKP 83
          +D  L     P
Sbjct: 82 MDMKLKIEFVP 92


>gi|126736476|ref|ZP_01752217.1| DNA-binding protein, putative [Roseobacter sp. CCS2]
 gi|126714014|gb|EBA10884.1| DNA-binding protein, putative [Roseobacter sp. CCS2]
          Length = 214

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 37/78 (47%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R      ++ + + +      R +RK +  T ++   + G A+S +S++E G+ +   D 
Sbjct: 18 RIARESGESSVAQPLDLGARVRELRKASNWTLEQAAQQAGLARSTLSKIENGQMSPTYDA 77

Query: 66 MIILAHTLDTPLWKLLKP 83
          +  LA  L+  + +L  P
Sbjct: 78 LKKLAIGLEISVPQLFTP 95


>gi|50085433|ref|YP_046943.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531409|emb|CAG69121.1| conserved hypothetical protein; putative transcriptional
          regulator [Acinetobacter sp. ADP1]
          Length = 182

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R++A L+  E+  R G A+S +S+LE  +   +++ +  L   L+ P  K
Sbjct: 6  EIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAK 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|323492244|ref|ZP_08097402.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG
          20546]
 gi|323313557|gb|EGA66663.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG
          20546]
          Length = 507

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 260

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R     TQ+E+  + G +++ I   E G  +   + M  LA+  +  +  L
Sbjct: 9  VIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSIDDL 68

Query: 81 LKP 83
            P
Sbjct: 69 FPP 71


>gi|256789090|ref|ZP_05527521.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 190

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T + +  R G ++  + ++E  ++  ++  ++ +   L   +  
Sbjct: 9  QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|256114435|ref|ZP_05455150.1| hypothetical protein Bmelb3E_16432 [Brucella melitensis bv. 3
          str. Ether]
          Length = 650

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 8  GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66


>gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271]
 gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271]
          Length = 149

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MMFSERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|225628403|ref|ZP_03786437.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo]
 gi|237816216|ref|ZP_04595211.1| Cro/CI family transcriptional regulator [Brucella abortus str.
          2308 A]
 gi|225616249|gb|EEH13297.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo]
 gi|237788678|gb|EEP62891.1| Cro/CI family transcriptional regulator [Brucella abortus str.
          2308 A]
          Length = 652

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 10 GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 68


>gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787]
 gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787]
          Length = 252

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE ++TQK++ ++   +   +S+ E G S  N+  +I +A  L   + +LL
Sbjct: 9  FGQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELL 68

Query: 82 K 82
          +
Sbjct: 69 Q 69


>gi|161619771|ref|YP_001593658.1| hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365]
 gi|163845428|ref|YP_001623083.1| hypothetical protein BSUIS_B1330 [Brucella suis ATCC 23445]
 gi|254703616|ref|ZP_05165444.1| hypothetical protein Bsuib36_06776 [Brucella suis bv. 3 str. 686]
 gi|260568922|ref|ZP_05839390.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|161336582|gb|ABX62887.1| Hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365]
 gi|163676151|gb|ABY40261.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|260154306|gb|EEW89388.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
          Length = 650

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 8  GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66


>gi|218892536|ref|YP_002441405.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
 gi|254234475|ref|ZP_04927798.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719]
 gi|254239730|ref|ZP_04933052.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192]
 gi|126166406|gb|EAZ51917.1| hypothetical protein PACG_00331 [Pseudomonas aeruginosa C3719]
 gi|126193108|gb|EAZ57171.1| hypothetical protein PA2G_00354 [Pseudomonas aeruginosa 2192]
 gi|218772764|emb|CAW28549.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
          Length = 216

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 1   MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           M +       L +   R  ++     N R +R +A L+Q+ +      ++  +  +E+G 
Sbjct: 22  MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 81

Query: 59  STINIDNMIILAHTLDTPLWKLLK 82
             +++  +  +A  L      L++
Sbjct: 82  VNVSLSTLDRIAAALGVLFPDLVQ 105


>gi|30260266|ref|NP_842643.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|42779154|ref|NP_976401.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47525328|ref|YP_016677.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183109|ref|YP_026361.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49479321|ref|YP_034428.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52145140|ref|YP_081687.1| transcriptional regulator [Bacillus cereus E33L]
 gi|65317536|ref|ZP_00390495.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|118475846|ref|YP_892997.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165872558|ref|ZP_02217190.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167635071|ref|ZP_02393388.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641513|ref|ZP_02399761.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170688934|ref|ZP_02880136.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170707546|ref|ZP_02897999.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177655635|ref|ZP_02936998.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190569001|ref|ZP_03021902.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036381|ref|ZP_03103778.1| DNA-binding protein [Bacillus cereus W]
 gi|196041773|ref|ZP_03109063.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196047358|ref|ZP_03114571.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|206977949|ref|ZP_03238836.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217957651|ref|YP_002336193.1| DNA-binding protein [Bacillus cereus AH187]
 gi|218901277|ref|YP_002449111.1| DNA-binding protein [Bacillus cereus AH820]
 gi|222093845|ref|YP_002527894.1| transcriptional regulator [Bacillus cereus Q1]
 gi|225862128|ref|YP_002747506.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227812749|ref|YP_002812758.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228912814|ref|ZP_04076462.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228925328|ref|ZP_04088425.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228931577|ref|ZP_04094484.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228943881|ref|ZP_04106267.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229015477|ref|ZP_04172476.1| Transcriptional regulator Xre [Bacillus cereus AH1273]
 gi|229021686|ref|ZP_04178269.1| Transcriptional regulator Xre [Bacillus cereus AH1272]
 gi|229089206|ref|ZP_04220488.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42]
 gi|229100872|ref|ZP_04231679.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28]
 gi|229119737|ref|ZP_04248999.1| Transcriptional regulator Xre [Bacillus cereus 95/8201]
 gi|229136921|ref|ZP_04265549.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26]
 gi|229159248|ref|ZP_04287273.1| Transcriptional regulator Xre [Bacillus cereus R309803]
 gi|229182469|ref|ZP_04309721.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1]
 gi|229194465|ref|ZP_04321269.1| Transcriptional regulator Xre [Bacillus cereus m1293]
 gi|229603974|ref|YP_002864727.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254682298|ref|ZP_05146159.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724216|ref|ZP_05186001.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254735477|ref|ZP_05193185.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254744621|ref|ZP_05202300.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254756326|ref|ZP_05208355.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254762382|ref|ZP_05214224.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|300119170|ref|ZP_07056871.1| DNA-binding protein [Bacillus cereus SJ1]
 gi|301051813|ref|YP_003790024.1| putative transcriptional regulator [Bacillus anthracis CI]
 gi|30253587|gb|AAP24129.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|42735069|gb|AAS39009.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47500476|gb|AAT29152.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177036|gb|AAT52412.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49330877|gb|AAT61523.1| probable transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|51978609|gb|AAU20159.1| probable transcriptional regulator [Bacillus cereus E33L]
 gi|118415071|gb|ABK83490.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164711686|gb|EDR17231.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510498|gb|EDR85896.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529545|gb|EDR92295.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170127542|gb|EDS96416.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170667158|gb|EDT17919.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172080046|gb|EDT65145.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190559925|gb|EDV13909.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991011|gb|EDX54982.1| DNA-binding protein [Bacillus cereus W]
 gi|196021760|gb|EDX60454.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196027393|gb|EDX66010.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|206743855|gb|EDZ55275.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217064728|gb|ACJ78978.1| DNA-binding protein [Bacillus cereus AH187]
 gi|218537235|gb|ACK89633.1| DNA-binding protein [Bacillus cereus AH820]
 gi|221237892|gb|ACM10602.1| probable transcriptional regulator [Bacillus cereus Q1]
 gi|225785876|gb|ACO26093.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227005378|gb|ACP15121.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228589055|gb|EEK47069.1| Transcriptional regulator Xre [Bacillus cereus m1293]
 gi|228601049|gb|EEK58617.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1]
 gi|228624263|gb|EEK81064.1| Transcriptional regulator Xre [Bacillus cereus R309803]
 gi|228646586|gb|EEL02792.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26]
 gi|228663762|gb|EEL19340.1| Transcriptional regulator Xre [Bacillus cereus 95/8201]
 gi|228682550|gb|EEL36620.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28]
 gi|228694169|gb|EEL47850.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42]
 gi|228739622|gb|EEL90035.1| Transcriptional regulator Xre [Bacillus cereus AH1272]
 gi|228745820|gb|EEL95823.1| Transcriptional regulator Xre [Bacillus cereus AH1273]
 gi|228815838|gb|EEM62073.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228828129|gb|EEM73856.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228834375|gb|EEM79915.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228846874|gb|EEM91878.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229268382|gb|ACQ50019.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|298723492|gb|EFI64233.1| DNA-binding protein [Bacillus cereus SJ1]
 gi|300373982|gb|ADK02886.1| probable transcriptional regulator [Bacillus cereus biovar
          anthracis str. CI]
 gi|324324065|gb|ADY19325.1| putative transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 67

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L   +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 DELM 65


>gi|291537380|emb|CBL10492.1| Predicted transcriptional regulators [Roseburia intestinalis
          M50/1]
          Length = 110

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   KLTQ+ +  R   +  +I E+E G   ++++ +I L+  L+     LL
Sbjct: 6  LGVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNVSTDYLL 65


>gi|265751235|ref|ZP_06087298.1| predicted protein [Bacteroides sp. 3_1_33FAA]
 gi|270294600|ref|ZP_06200802.1| predicted protein [Bacteroides sp. D20]
 gi|263238131|gb|EEZ23581.1| predicted protein [Bacteroides sp. 3_1_33FAA]
 gi|270276067|gb|EFA21927.1| predicted protein [Bacteroides sp. D20]
          Length = 66

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F       R   K++Q+ + N     ++++ ++E GK  +++     +A  L+  L  
Sbjct: 5  EVFGKKVLERRLSLKISQETLANMADIDRTYLPDIEKGKRNVSLRVADKIAKALNVSLKD 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|228955944|ref|ZP_04117880.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228803724|gb|EEM50407.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 59

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++Q+E+   +G  +++IS LE GK    I+ +  LA  L     +L+K
Sbjct: 1  MSQEELAFNSGLDRTYISLLERGKRKPTINTLFALARALKVNPSQLIK 48


>gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
          700345]
 gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
          700345]
          Length = 182

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +RKE  L+Q+E+  R G   S IS +E    + ++ ++  +   L   L    
Sbjct: 4  GENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 62


>gi|116249226|ref|YP_765067.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115253876|emb|CAK12271.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 90

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R +R    L+Q+ +       +S++  +E G   + +  +   A  L   + 
Sbjct: 4  RQTIGWNLRRLRVAKGLSQERLALEAEIDRSYVGRVERGMENVTVATLEAFARVLSVNVS 63

Query: 79 KLL 81
           L 
Sbjct: 64 ALF 66


>gi|320530460|ref|ZP_08031518.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas artemidis F0399]
 gi|320137293|gb|EFW29217.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas artemidis F0399]
          Length = 93

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +++  ER I      + R  A LTQKE+  ++G AQS IS+LE G +  ++  +  LA  
Sbjct: 22 ESLQPERAII-EAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLAAG 80

Query: 73 LDTPLWKLLKP 83
          +   L     P
Sbjct: 81 MGMRLHLEFLP 91


>gi|295133913|ref|YP_003584589.1| hypothetical protein ZPR_2068 [Zunongwangia profunda SM-A87]
 gi|294981928|gb|ADF52393.1| membrane protein [Zunongwangia profunda SM-A87]
          Length = 214

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E     N  +N R     +Q+ +   +G +   I  +E      N D++  +A  L   +
Sbjct: 2  ENQNLSNRIKNFRILKGFSQEALAEHSGLSVRTIQRMENNDRIPNADSLKKVAEALGISI 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|225573231|ref|ZP_03781986.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039363|gb|EEG49609.1| hypothetical protein RUMHYD_01422 [Blautia hydrogenotrophica DSM
          10507]
          Length = 217

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IRK  K+ Q+E+ +  G     +S++E G +    + +  + + L     +
Sbjct: 4  QLLGENIQIIRKHRKMKQQELADAIGINLQSLSKIERGVNYPTFETLEKIINVLGVTPNE 63

Query: 80 LLK 82
          LL 
Sbjct: 64 LLT 66


>gi|197261594|ref|YP_002154411.1| helix-turn-helix domain protein [Bacillus phage IEBH]
 gi|197092466|gb|ACH42341.1| helix-turn-helix domain protein [Bacillus phage IEBH]
          Length = 79

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F +  R+IRK+  +TQ+++  +  F+  S IS +E GK  ++ + +  LA+ L   + 
Sbjct: 1  MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSID 60

Query: 79 KLL 81
          +L 
Sbjct: 61 ELF 63


>gi|170781903|ref|YP_001710235.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169156471|emb|CAQ01619.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 487

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++     R+ RK A LT + +  R G   S +S +E G+    +  +  +A  LD  +
Sbjct: 14 DQLVIGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALDVDV 73

Query: 78 WKLL 81
            LL
Sbjct: 74 THLL 77


>gi|153010591|ref|YP_001371805.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151562479|gb|ABS15976.1| putative transcriptional regulator, XRE family [Ochrobactrum
          anthropi ATCC 49188]
          Length = 91

 Score = 53.8 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R IR    ++Q ++   +G  +++   LE G     +  +  LA  L+  +  
Sbjct: 5  ELLAINLRRIRVARGISQDDLALISGVERAYTGRLERGAMNPTVKTLAKLATALECSVAD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 302

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +++RKE  L+Q+ +  +   ++  +S+ E+G     +D +I+++      +  L+
Sbjct: 3  FGMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDYLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|228906769|ref|ZP_04070639.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL
          200]
 gi|228852885|gb|EEM97669.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL
          200]
          Length = 149

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+   D  + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|218288753|ref|ZP_03493016.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218241111|gb|EED08287.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 82

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  RK   L+ +E+  R G + S+I  +E+G    N   + ++A  L   L  L
Sbjct: 4  LAQRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDL 62


>gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D
          str. JGS1721]
 gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D
          str. JGS1721]
          Length = 342

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +N RKE KLTQ ++  R   ++S IS  E G    +I  +I LA+ ++  +  L
Sbjct: 5  VFANNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSIDNL 64

Query: 81 L 81
           
Sbjct: 65 F 65


>gi|164686153|ref|ZP_02210183.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM
          16795]
 gi|164601755|gb|EDQ95220.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM
          16795]
          Length = 183

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R    L+  E    TG +++ + ++E G+S+  I  +  ++  L      LL
Sbjct: 8  VGQNLRRLRNSLGLSLDEASKLTGVSKAMLGQIERGESSPTISTLWKISSGLKVNFTSLL 67


>gi|167031535|ref|YP_001666766.1| helix-turn-helix domain-containing protein [Pseudomonas putida
          GB-1]
 gi|166858023|gb|ABY96430.1| helix-turn-helix domain protein [Pseudomonas putida GB-1]
          Length = 91

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + +R    LTQ++  + +  +++++S LE G  +  +D +  +A+ ++    
Sbjct: 4  KQAFGQALKQLRMSQGLTQEDFSDVS--SRTYLSTLERGLKSPTLDKLDEIAYVMEVHPV 61

Query: 79 KLL 81
           +L
Sbjct: 62 SIL 64


>gi|118619637|ref|YP_907969.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118571747|gb|ABL06498.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 138

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  ++    +S    +   I  +  R  R+ A ++ +++  R+G +  ++S++E G   
Sbjct: 1  MPGEEKLGAKVSAVSSKASDI-GSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK 59

Query: 61 INIDNMIILAHTLDTPLWKL 80
           + D +  +A  L      L
Sbjct: 60 PSADVLAQIAKALRVSAEVL 79


>gi|309792582|ref|ZP_07687044.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225396|gb|EFO79162.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6]
          Length = 206

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 6  RDEPH---LSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          RD            ++  +      R +R+  +L+ + +   +G A + +S +E GK++ 
Sbjct: 12 RDLHVPEARDCPSPQDGKVDVGARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSP 71

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
          ++  +  +A  L  P+    +P
Sbjct: 72 SVSTLQQVAVALGVPITSFFEP 93


>gi|307301170|ref|ZP_07580932.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|307321071|ref|ZP_07600476.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306893243|gb|EFN24024.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306903626|gb|EFN34213.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 192

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + +AI           R +R    LT  ++  R+G +++ IS +E G+++     +  L 
Sbjct: 1  MENAIAPLEETMAMRLRELRMARDLTLDDLAGRSGVSRAMISRIERGEASPTAQLLAKLC 60

Query: 71 HTLDTPLWKLL 81
            L T L  L 
Sbjct: 61 SALGTTLSALF 71


>gi|295697327|ref|YP_003590565.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295412929|gb|ADG07421.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 181

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R +R+E   T +E+  +   +   IS++E G+    +     +   L+ P+
Sbjct: 7  KLRRVRQEKGWTIQELAEKCEVSPGLISQVERGRVVPTLTTFWRICQALEVPM 59


>gi|222148474|ref|YP_002549431.1| hypothetical protein Avi_1998 [Agrobacterium vitis S4]
 gi|221735462|gb|ACM36425.1| Conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 119

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R   K+T +E+  + G +  ++SE+E+GK   +   M  +A  L   L  L
Sbjct: 68  RMFRKMTARELAEQAGISAPYVSEIESGKKDGSFATMKKIAEALRVDLDDL 118


>gi|218896089|ref|YP_002444500.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842]
 gi|228964096|ref|ZP_04125221.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|218544124|gb|ACK96518.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842]
 gi|228795583|gb|EEM43065.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 149

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+   D  + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|218779200|ref|YP_002430518.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760584|gb|ACL03050.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 196

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           + + + +     N    RK   ++Q+ + + +G ++S I+ +ETGK   ++  ++ +A 
Sbjct: 5  DEVLQQTKYALAKNVAVGRKAHNMSQQALADASGVSKSTIAAIETGKGEPSLSTIVAIAC 64

Query: 72 TLDTPLWKLL 81
          TL      L 
Sbjct: 65 TLQCSPQMLF 74


>gi|62290714|ref|YP_222507.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1
          str. 9-941]
 gi|189024928|ref|YP_001935696.1| Cro/CI family transcriptional regulator [Brucella abortus S19]
 gi|225853293|ref|YP_002733526.1| hypothetical protein BMEA_A1902 [Brucella melitensis ATCC 23457]
 gi|254690004|ref|ZP_05153258.1| hypothetical protein Babob68_07506 [Brucella abortus bv. 6 str.
          870]
 gi|254694495|ref|ZP_05156323.1| hypothetical protein Babob3T_07514 [Brucella abortus bv. 3 str.
          Tulya]
 gi|254698155|ref|ZP_05159983.1| hypothetical protein Babob28_10710 [Brucella abortus bv. 2 str.
          86/8/59]
 gi|254700494|ref|ZP_05162322.1| hypothetical protein Bsuib55_06531 [Brucella suis bv. 5 str. 513]
 gi|254708298|ref|ZP_05170126.1| hypothetical protein BpinM_15413 [Brucella pinnipedialis
          M163/99/10]
 gi|254708850|ref|ZP_05170661.1| hypothetical protein BpinB_01038 [Brucella pinnipedialis B2/94]
 gi|254714691|ref|ZP_05176502.1| hypothetical protein BcetM6_15404 [Brucella ceti M644/93/1]
 gi|254717589|ref|ZP_05179400.1| hypothetical protein BcetM_14533 [Brucella ceti M13/05/1]
 gi|254731038|ref|ZP_05189616.1| hypothetical protein Babob42_07546 [Brucella abortus bv. 4 str.
          292]
 gi|256030376|ref|ZP_05443990.1| hypothetical protein BpinM2_06958 [Brucella pinnipedialis
          M292/94/1]
 gi|256045452|ref|ZP_05448343.1| hypothetical protein Bmelb1R_13219 [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256061874|ref|ZP_05452007.1| hypothetical protein Bneo5_16155 [Brucella neotomae 5K33]
 gi|256160551|ref|ZP_05458237.1| hypothetical protein BcetM4_16231 [Brucella ceti M490/95/1]
 gi|256255754|ref|ZP_05461290.1| hypothetical protein BcetB_16060 [Brucella ceti B1/94]
 gi|256258259|ref|ZP_05463795.1| hypothetical protein Babob9C_13113 [Brucella abortus bv. 9 str.
          C68]
 gi|256263214|ref|ZP_05465746.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|260547047|ref|ZP_05822785.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260755540|ref|ZP_05867888.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758763|ref|ZP_05871111.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260762597|ref|ZP_05874934.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
          86/8/59]
 gi|261214811|ref|ZP_05929092.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3
          str. Tulya]
 gi|261757497|ref|ZP_06001206.1| transcriptional regulator [Brucella sp. F5/99]
 gi|297249109|ref|ZP_06932817.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str.
          B3196]
 gi|62196846|gb|AAX75146.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1
          str. 9-941]
 gi|189020500|gb|ACD73222.1| transcriptional regulator, Cro/CI family [Brucella abortus S19]
 gi|225641658|gb|ACO01572.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260095412|gb|EEW79290.1| transcriptional regulator [Brucella abortus NCTC 8038]
 gi|260669081|gb|EEX56021.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673023|gb|EEX59844.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260675648|gb|EEX62469.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260916418|gb|EEX83279.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3
          str. Tulya]
 gi|261737481|gb|EEY25477.1| transcriptional regulator [Brucella sp. F5/99]
 gi|263093166|gb|EEZ17272.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9]
 gi|297174242|gb|EFH33599.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str.
          B3196]
          Length = 650

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 8  GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66


>gi|319792387|ref|YP_004154027.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594850|gb|ADU35916.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 236

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +   +P      L +R  F +  R  RK    T  ++  R+G + + IS  E G+  +  
Sbjct: 8  KPGTKPKDEAPTL-DRTTFGHRLRTARKRFGWTLAQLAERSGVSITTISRAERGQLALGY 66

Query: 64 DNMIILAHTLDTPLWKLL 81
          +N   L   L+  +  + 
Sbjct: 67 ENFAALGRALEMDMNAMF 84


>gi|257437962|ref|ZP_05613717.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257199622|gb|EEU97906.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 94

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
              + R    LTQKE+  RTG  Q+ IS+LE G    ++  +  LA  +   L  +  P
Sbjct: 25 RAMADARISQNLTQKELAERTGINQADISKLENGTRNPSLKLLKRLADGMGMDLKLVFTP 84


>gi|163731757|ref|ZP_02139204.1| transcriptional regulator HTH-3 family, putative [Roseobacter
          litoralis Och 149]
 gi|161395211|gb|EDQ19533.1| transcriptional regulator HTH-3 family, putative [Roseobacter
          litoralis Och 149]
          Length = 207

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T ++   + G A+S +S++E G+ +   D +  LA  L+  + +L 
Sbjct: 27 LGVRVRELRKARAWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNISIPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|16973422|gb|AAL32284.1|AF118548_4 hypothetical protein [Brucella abortus]
          Length = 650

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 8  GMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 66


>gi|75764621|ref|ZP_00744064.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228899709|ref|ZP_04063958.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL
          4222]
 gi|74487893|gb|EAO51666.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228859941|gb|EEN04352.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL
          4222]
          Length = 149

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+   D  + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2]
 gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2]
          Length = 120

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RKE  L+Q E+ +R GF++  ++  E G    + + +I +A   +     L
Sbjct: 1  MLGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYL 60

Query: 81 LK 82
          L+
Sbjct: 61 LR 62


>gi|257439609|ref|ZP_05615364.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
 gi|257197976|gb|EEU96260.1| toxin-antitoxin system, antitoxin component, Xre family
           [Faecalibacterium prausnitzii A2-165]
          Length = 212

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             RKE+ LTQ+++  RTG AQ+ IS+LE G    ++  +  LA  +  
Sbjct: 155 AARKESGLTQQQLSERTGIAQTDISKLERGNGNPSLRTLQRLAAGMGM 202


>gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 194

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    +T   +   TG A S +S LE+G+    ++ ++ LA   + PL +L+
Sbjct: 12 VGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQRRPGLELLLPLAKAYNVPLDELV 71


>gi|206969826|ref|ZP_03230780.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|218233772|ref|YP_002369171.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218899530|ref|YP_002447941.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228923113|ref|ZP_04086404.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228941529|ref|ZP_04104079.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228960632|ref|ZP_04122278.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228974459|ref|ZP_04135027.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228981053|ref|ZP_04141355.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|229071869|ref|ZP_04205081.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|229081626|ref|ZP_04214121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|229111834|ref|ZP_04241380.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|229146932|ref|ZP_04275296.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|229152564|ref|ZP_04280754.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
 gi|229180637|ref|ZP_04307977.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|296504853|ref|YP_003666553.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|206735514|gb|EDZ52682.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|218161729|gb|ACK61721.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218543442|gb|ACK95836.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228602782|gb|EEK60263.1| Transcriptional regulator, MerR [Bacillus cereus 172560W]
 gi|228630930|gb|EEK87569.1| Transcriptional regulator, MerR [Bacillus cereus m1550]
 gi|228636531|gb|EEK92997.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24]
 gi|228671590|gb|EEL26888.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15]
 gi|228701630|gb|EEL54121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|228711241|gb|EEL63204.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|228778713|gb|EEM26978.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|228785295|gb|EEM33306.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228799060|gb|EEM46031.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228818179|gb|EEM64254.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228836492|gb|EEM81842.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|296325905|gb|ADH08833.1| MerR family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|326942143|gb|AEA18039.1| MerR family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 181

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|30022437|ref|NP_834068.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|29897995|gb|AAP11269.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
          Length = 181

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|332666712|ref|YP_004449500.1| helix-turn-helix domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335526|gb|AEE52627.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 174

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           ++  +  D             +  RK+A LTQ+E+  ++G ++ +IS LE  K+ I +  
Sbjct: 101 QNSTYDPDKNPE----IGLMIKQARKDAGLTQEELAQKSGTSKHYISRLENNKADIELLT 156

Query: 66  MIILAHT 72
           +  +   
Sbjct: 157 LKKIIEA 163


>gi|328947407|ref|YP_004364744.1| hypothetical protein Tresu_0498 [Treponema succinifaciens DSM
          2489]
 gi|328447731|gb|AEB13447.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 195

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+   LT K +      ++S +S++E  K +  ID ++ +A  LD  L  L 
Sbjct: 12 FGEKLRAVRERKHLTLKAVAAHAKVSESLVSQIERNKVSPAIDTLLDIADALDISLEFLF 71

Query: 82 K 82
          +
Sbjct: 72 E 72


>gi|298292634|ref|YP_003694573.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296929145|gb|ADH89954.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 123

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 14  AILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           A + +R++   N  R  R+   L+   +  + G A++++S++ETG     +  +  +A  
Sbjct: 55  AAIVDRLVAGENAIRVWREHRGLSASSLAEKAGIARAFLSQIETGNRDGTVATLKKIADA 114

Query: 73  LDTPLWKLL 81
           L   +  L+
Sbjct: 115 LLVTVDDLI 123


>gi|270261929|ref|ZP_06190201.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
 gi|270043805|gb|EFA16897.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13]
          Length = 189

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD P+ +L+
Sbjct: 19 IRRERERLGLSVTELARRAGIAKSTLSQLETGSGNPSLETLWSLAMALDVPVSRLI 74


>gi|170756833|ref|YP_001780378.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169122045|gb|ACA45881.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 140

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F   F+NIRKE  L+Q+++   +  + + IS +E+G+    + + +  +A  L     +L
Sbjct: 3  FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYVEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 192

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R     T  ++   TG ++S +S LE+G+   +++ ++ +A     PL +L+
Sbjct: 9  VGERLRALRASRGATLADLAEVTGISKSTLSRLESGQRRPSLELLLPIARAHRVPLDELV 68


>gi|229039980|ref|ZP_04189744.1| Transcriptional regulator Xre [Bacillus cereus AH676]
 gi|228727388|gb|EEL78581.1| Transcriptional regulator Xre [Bacillus cereus AH676]
          Length = 82

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L+  +
Sbjct: 17 EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSI 76

Query: 78 WKLL 81
           +L+
Sbjct: 77 EELM 80


>gi|229542977|ref|ZP_04432037.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
 gi|229327397|gb|EEN93072.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1]
          Length = 139

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF    + +R     +Q E+  R G +   IS  ETG S  +I  +  ++  L   + 
Sbjct: 13 KAIFAARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSID 72

Query: 79 KLL 81
           LL
Sbjct: 73 YLL 75


>gi|126699832|ref|YP_001088729.1| putative regulatory protein [Clostridium difficile 630]
 gi|254975815|ref|ZP_05272287.1| putative regulatory protein [Clostridium difficile QCD-66c26]
 gi|255101355|ref|ZP_05330332.1| putative regulatory protein [Clostridium difficile QCD-63q42]
 gi|255307231|ref|ZP_05351402.1| putative regulatory protein [Clostridium difficile ATCC 43255]
 gi|255314944|ref|ZP_05356527.1| putative regulatory protein [Clostridium difficile QCD-76w55]
 gi|255517618|ref|ZP_05385294.1| putative regulatory protein [Clostridium difficile QCD-97b34]
 gi|255650729|ref|ZP_05397631.1| putative regulatory protein [Clostridium difficile QCD-37x79]
 gi|260683815|ref|YP_003215100.1| putative regulatory protein [Clostridium difficile CD196]
 gi|260687475|ref|YP_003218609.1| putative regulatory protein [Clostridium difficile R20291]
 gi|306520644|ref|ZP_07406991.1| putative regulatory protein [Clostridium difficile QCD-32g58]
 gi|115251269|emb|CAJ69100.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|260209978|emb|CBA63987.1| putative regulatory protein [Clostridium difficile CD196]
 gi|260213492|emb|CBE05196.1| putative regulatory protein [Clostridium difficile R20291]
          Length = 105

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  RK+A LT KE  N  G +  +I+++E+GK   ++   I   + L+     L+K
Sbjct: 5  GKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVLIK 64


>gi|295107230|emb|CBL04773.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 69

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +R+E  L Q+     +G  +S+++ +E G+  + I  +  +A      + 
Sbjct: 4  RKALGLRIKELREERDLPQRAFAEASGLDRSYLAAIENGQINVGIKTVERIAAGFGISVE 63

Query: 79 KLLK 82
          +L K
Sbjct: 64 QLFK 67


>gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916]
 gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916]
          Length = 170

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +++R    L+  ++  +TG  QS IS+LE G   I+ D +  +A  +D P+    +
Sbjct: 5  EKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDIFFQ 63


>gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753]
 gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753]
          Length = 187

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +RK A +TQ+E+  R G  ++ IS+ ETG    ++  +  +A  L  P+ +LL
Sbjct: 5  QIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELL 61


>gi|146299117|ref|YP_001193708.1| helix-turn-helix domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146153535|gb|ABQ04389.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101]
          Length = 76

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R++  L+Q+ + +     +S I+ LE  K    I  ++ +A+ LD    +LL
Sbjct: 12 LGVHVRQLREKKGLSQQGLADDCNINKSQIARLEVAKVNTGIKTLVKIANALDIEPKELL 71


>gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct]
          Length = 200

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 5  KRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R  P  +    R E        R +RK   LT  E+  ++     +IS+LE   +  +I
Sbjct: 2  PRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSI 61

Query: 64 DNMIILAHTLDT 75
            +  +A +L  
Sbjct: 62 PALFNIARSLGV 73


>gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 113

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK+A LTQ E+  + G  QS  ++ E GK     +N+I LA  L+  +  
Sbjct: 1  MAFAERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSVDY 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|260588066|ref|ZP_05853979.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|260541593|gb|EEX22162.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 107

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                RKE  +TQKE+  +TG  Q+ IS +E G    ++D +  LA  +   L
Sbjct: 43 RAMVAARKERNMTQKELAEKTGITQADISRIENGTRNPSLDMIKRLAKGMGMRL 96


>gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W]
 gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W]
          Length = 107

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|220924825|ref|YP_002500127.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219949432|gb|ACL59824.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 218

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  E+  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 36 LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 95


>gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM
           16841]
 gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM
           16841]
          Length = 380

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 3   RRKRDEPHLSDAILRERM----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           +R   E  LS     E+M    I  +   N+RK+   +Q+E+  + G  +  IS+ E  +
Sbjct: 28  KRTESEKQLSGKRKDEKMEEVMILADKIINLRKKNGWSQEELAEKLGVTRQSISKYEGAQ 87

Query: 59  STINIDNMIILAHTLDTPLWKLLK 82
           S  ++D ++ L+         L+K
Sbjct: 88  SIPDLDKILKLSEIFGVTTDYLIK 111


>gi|134098034|ref|YP_001103695.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291007202|ref|ZP_06565175.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133910657|emb|CAM00770.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 488

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++F    R++R+ A LT  E+  R G A S +S LE G     +  +  LA  L + + +
Sbjct: 19 LVFGQRLRHLRRAAGLTLVELGERVGRAPSQLSLLENGHREPKLSLLRSLADALGSSVDE 78

Query: 80 LL 81
          L+
Sbjct: 79 LM 80


>gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 193

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          I     R +RK   LT K++   TG +  ++S+LE   +  ++  + +++  L  
Sbjct: 12 IIGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAADPSVRALNVISTALGV 66


>gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 104

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L     
Sbjct: 3  RSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETNTYTPSIDAIMAFAQVLGVKPK 62

Query: 79 KLL 81
             
Sbjct: 63 DFF 65


>gi|150391108|ref|YP_001321157.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149950970|gb|ABR49498.1| putative transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 89

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +R    L+QKE+  + G  QS IS LE G+   +I+ +  +AH L   +
Sbjct: 35 QLRLAQGLSQKELAEKVGTKQSAISRLEGGEYNPSIEFLSKVAHALGKEI 84


>gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5]
 gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5]
          Length = 189

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                   N + IRK   L+   +   TG +++ + ++E G S   I  +  +   L  
Sbjct: 2  EPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGI 61

Query: 76 PLWKLLK 82
              L++
Sbjct: 62 SFTTLIE 68


>gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 192

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL--- 77
          +     + +R E K T K +  +TG +  ++S+ E G ++I ID++  +A  L+  L   
Sbjct: 6  VIGFRIKELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVELSSF 65

Query: 78 WKLLKP 83
          + L  P
Sbjct: 66 FDLSSP 71


>gi|266624214|ref|ZP_06117149.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288863957|gb|EFC96255.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 94

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  + +R +  +TQ ++  + G  +S IS  ETG    + D +I +A         LL
Sbjct: 4  FGNTLKTLRLQENMTQAQLSQKLGLTKSVISAYETGLRLPSYDVLIHIAQIFKVSTDYLL 63


>gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273]
 gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272]
 gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272]
 gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273]
          Length = 149

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|255093201|ref|ZP_05322679.1| putative regulatory protein [Clostridium difficile CIP 107932]
          Length = 103

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  RK+A LT KE  N  G +  +I+++E+GK   ++   I   + L+     L+K
Sbjct: 5  GKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVLIK 64


>gi|224538182|ref|ZP_03678721.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520204|gb|EEF89309.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 70

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            RKE  +TQ+++       +++I  +E GK  I+I  +  +A+ L+  +    
Sbjct: 17 QRRKELGITQEDLAYSANVDRTYIGYIENGKQNISISILCKIANVLNLNMKDFF 70


>gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 189

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                   N + IRK   L+   +   TG +++ + ++E G S   I  +  +   L  
Sbjct: 2  EPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGI 61

Query: 76 PLWKLLK 82
              L++
Sbjct: 62 SFTTLIE 68


>gi|170782465|ref|YP_001710798.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169157034|emb|CAQ02207.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 107

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  R  R+   ++Q+ +   +G   + + ++E G+   ++ N+I +A  LD 
Sbjct: 12 FGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDV 65


>gi|148272464|ref|YP_001222025.1| Cro/CI family transcriptional regulator [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
 gi|147830394|emb|CAN01329.1| putative transcriptional regulator, Cro/CI family [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 107

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  R  R+   ++Q+ +   +G   + + ++E G+   ++ N+I +A  LD 
Sbjct: 12 FGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDV 65


>gi|42541081|gb|AAS19438.1| C.SnaBI control protein [Sphaerotilus natans]
          Length = 79

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R  + L+Q+E+ +  G  ++++S++E G     +  +  ++  L+     L+
Sbjct: 9  AQALVKYRHLSHLSQEELADAAGIHRTYVSQIERGLKMPTVAILFKISKALNIRASDLI 67


>gi|307566125|ref|ZP_07628583.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella amnii CRIS 21A-A]
 gi|307345313|gb|EFN90692.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella amnii CRIS 21A-A]
          Length = 101

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          RDE   +              +  R E  LTQ+E+  R G  ++ IS LE G S I+I  
Sbjct: 17 RDEHERNVTDAVHAFQIGEIIKKARIEQNLTQEELGERIGVKRAQISRLEKGYS-ISIPT 75

Query: 66 MIILAHTLDTPLWKL 80
          M  +   L      L
Sbjct: 76 MSRVFKALGVSTASL 90


>gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 197

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +T  ++   TG ++S +S LE+G+    ++ ++ LA T D PL  L+
Sbjct: 8  VGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDVPLDDLV 67


>gi|268610105|ref|ZP_06143832.1| putative regulatory protein [Ruminococcus flavefaciens FD-1]
 gi|325679993|ref|ZP_08159562.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324108431|gb|EGC02678.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 126

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     + +R   K+ Q  +  +   + S++S +E G+ T +++ +I +A  LDT +  
Sbjct: 6  KLIGKRIKEVRTARKMPQMLLAEKCDISDSYLSYIECGRKTPSLEVIIRIARELDTTVDS 65

Query: 80 LLK 82
          LL+
Sbjct: 66 LLE 68


>gi|257416855|ref|ZP_05593849.1| predicted protein [Enterococcus faecalis AR01/DG]
 gi|257158683|gb|EEU88643.1| predicted protein [Enterococcus faecalis ARO1/DG]
          Length = 239

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N+ +  R E  LTQ E+  +    +  IS  E  KS  NID +I L++  +  L +LLK
Sbjct: 4  GNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 63


>gi|302524705|ref|ZP_07277047.1| PopR protein [Streptomyces sp. AA4]
 gi|302433600|gb|EFL05416.1| PopR protein [Streptomyces sp. AA4]
          Length = 115

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          ++R      +A    R +   + R+ R+       ++  R G +  ++SE+E G+   + 
Sbjct: 9  QRRAPARDDEAEPLWREVLGRSLRSARENQGERLVDVAERAGISPQYLSEIERGRKEPSS 68

Query: 64 DNMIILAHTLDTPLWKLL 81
          + +  +   L   L  LL
Sbjct: 69 EMIAAVTGALGVNLTGLL 86


>gi|255971922|ref|ZP_05422508.1| predicted protein [Enterococcus faecalis T1]
 gi|256616820|ref|ZP_05473666.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256763304|ref|ZP_05503884.1| predicted protein [Enterococcus faecalis T3]
 gi|256957906|ref|ZP_05562077.1| predicted protein [Enterococcus faecalis DS5]
 gi|257079843|ref|ZP_05574204.1| predicted protein [Enterococcus faecalis JH1]
 gi|257087648|ref|ZP_05582009.1| predicted protein [Enterococcus faecalis D6]
 gi|294779495|ref|ZP_06744891.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|300860620|ref|ZP_07106707.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|255962940|gb|EET95416.1| predicted protein [Enterococcus faecalis T1]
 gi|256596347|gb|EEU15523.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256684555|gb|EEU24250.1| predicted protein [Enterococcus faecalis T3]
 gi|256948402|gb|EEU65034.1| predicted protein [Enterococcus faecalis DS5]
 gi|256987873|gb|EEU75175.1| predicted protein [Enterococcus faecalis JH1]
 gi|256995678|gb|EEU82980.1| predicted protein [Enterococcus faecalis D6]
 gi|294453452|gb|EFG21858.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|300849659|gb|EFK77409.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|323481602|gb|ADX81041.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 239

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N+ +  R E  LTQ E+  +    +  IS  E  KS  NID +I L++  +  L +LLK
Sbjct: 4  GNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 63


>gi|190572107|ref|YP_001969952.1| putative DNA-binding protein [Stenotrophomonas maltophilia K279a]
 gi|190010029|emb|CAQ43635.1| putative DNA-binding protein [Stenotrophomonas maltophilia K279a]
          Length = 74

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R +  ++Q+   +     +++ S++E G+  + +  +  +A  + T +  LL+
Sbjct: 14 IRAHRIDLGVSQEAFADHIQMHRAYYSKIERGEKNLTLATLERVAKGMGTSMSALLR 70


>gi|145593254|ref|YP_001157551.1| XRE family transcriptional regulator [Salinispora tropica
          CNB-440]
 gi|145302591|gb|ABP53173.1| transcriptional regulator, XRE family [Salinispora tropica
          CNB-440]
          Length = 228

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R +R     T +E+    G +  ++SE+E G+   + + +  +   L   L 
Sbjct: 35 RRVIGGVLRRLRVRQGRTLREVAAAAGVSMPYLSEVERGRKEASSEVLAAICRALGIRLS 94

Query: 79 KLL 81
           LL
Sbjct: 95 DLL 97


>gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium
          papyrosolvens DSM 2782]
 gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium
          papyrosolvens DSM 2782]
          Length = 179

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +  LTQ+E+  R   ++ +IS+LE   ++ +I  +I +  +L T +    
Sbjct: 4  GEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLIDILESLGTNIKDFF 62


>gi|322804725|emb|CBZ02277.1| transcriptional repressor [Clostridium botulinum H04402 065]
          Length = 63

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++ +  G  +  I  +E GK   +++  I +   L+  L  L 
Sbjct: 4  KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKALNKTLNDLF 61


>gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 120

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +RK    +Q+++  + G  +  IS+ E+ +   +I+N+I L+   +     
Sbjct: 1  MSISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|86142246|ref|ZP_01060756.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis
          MED217]
 gi|85830998|gb|EAQ49455.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis
          MED217]
          Length = 251

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R IR    L+Q+         +  +   E G+S   I+ +I +A+    P+  LL
Sbjct: 4  FGKNIRKIRSVKTLSQQAFAELFDLKRGTLGAYEEGRSEPKIETIIKIANYFSIPIDDLL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023
          [Streptococcus gallolyticus subsp. gallolyticus ATCC
          BAA-2069]
          Length = 210

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +RK+  +TQ E+    G  ++ IS++E G S     N+  +A        +L 
Sbjct: 9  FGKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTSYPTFANLDKIARYFKATPNELF 68


>gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 158

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N + +RK   LTQ E     G +++ +S  E G S+++ + +  +    +     L
Sbjct: 1  MIGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTSSVSTELLDRICQKFNVSYIDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|229028494|ref|ZP_04184614.1| Transcriptional regulator [Bacillus cereus AH1271]
 gi|228732807|gb|EEL83669.1| Transcriptional regulator [Bacillus cereus AH1271]
          Length = 66

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R +  LTQ+++  + G  +  IS +E GK   ++D  + + + +D  L  L 
Sbjct: 4  SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYVVDKTLNDLF 61


>gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H]
 gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H]
          Length = 180

 Score = 53.8 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q+E+  RTG   S IS +E+G    ++  +  +   +   L +  
Sbjct: 3  LGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMNPSVGTLKRILDGIPVTLGEFF 62


>gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis
          M50/1]
          Length = 198

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           H     +          +  R+  K+TQKE     G ++  I + E+G+  + ID +  
Sbjct: 4  SHSIKITMSSPEEIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQ 63

Query: 69 LAHTLDTPLWKLLKP 83
          +A+ L+ P  +LL P
Sbjct: 64 IANELNVPWQELLSP 78


>gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 475

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 15 ILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          +  +R +F     + +R++  LTQ  +    G + S+++ +E  +  ++   ++ LA   
Sbjct: 3  VTADRKLFLGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQRPVSAQLLLRLADAY 62

Query: 74 DTPLWKL 80
          D  L  L
Sbjct: 63 DVDLRTL 69


>gi|262282100|ref|ZP_06059869.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA]
 gi|262262554|gb|EEY81251.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA]
          Length = 70

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 20 MIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          MI   N +    R E  +TQ ++ +  G  +  I  +E GK   ++   I +   L+  L
Sbjct: 5  MIMAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCIAICKCLNKTL 64

Query: 78 WKLL 81
           +L 
Sbjct: 65 DQLF 68


>gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 322

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +   N+RK+   +Q+E   R G ++  IS+ E G+ST +++ ++ ++         
Sbjct: 1  MILADKITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDV 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|257439204|ref|ZP_05614959.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257198337|gb|EEU96621.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 95

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N    +R  AKL+Q+++  + G +   + +LE G S  ++  +I +A      +  LL
Sbjct: 9  GNRIFTLRTNAKLSQEKLAEKLGVSHHHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67


>gi|229078339|ref|ZP_04210903.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2]
 gi|228705014|gb|EEL57436.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2]
          Length = 149

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF  + +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSEHLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|164687455|ref|ZP_02211483.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM
          16795]
 gi|164603229|gb|EDQ96694.1| hypothetical protein CLOBAR_01096 [Clostridium bartlettii DSM
          16795]
          Length = 69

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N  + +RKE KL+Q E+    G +++ +S +ETG+        ++L   LD   
Sbjct: 3  EHLILRNRLKTVRKEKKLSQTELAELVGVSRNTVSSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens]
          Length = 265

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+Q+++  + G ++  +S+ E+G+S  +++ +IIL+   +  +  L+
Sbjct: 3  LAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13]
 gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 268

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+Q+++  + G ++  +S+ E+G+S  +++ +IIL+   +  +  L+
Sbjct: 3  LAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDYLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans
          EJ3]
 gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans
          EJ3]
          Length = 195

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           R IRKE  +TQ+E+  + G  Q++I++LE+GK    +     +   L
Sbjct: 16 IRKIRKELGITQEELARKAGVTQAYIAKLESGKVDPRLSTFNRILQAL 63


>gi|315647016|ref|ZP_07900129.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315277218|gb|EFU40547.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 181

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RN R + KLT KE+      + S++SE+E  K+  +I  +  +A+ L+     L 
Sbjct: 5  GEVIRNTRIKQKLTLKEVAKAGSISLSFLSEIERDKANPSISVLKRIANALNVNFTDLF 63


>gi|312870364|ref|ZP_07730489.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
 gi|311094065|gb|EFQ52384.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
          Length = 214

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R     TQ+E+  + G ++  IS  E G+S  +I  ++ L+      L  LL
Sbjct: 3  FAEKIKQYRAHNDWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYHVSLDDLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|325110382|ref|YP_004271450.1| hypothetical protein Plabr_3845 [Planctomyces brasiliensis DSM
          5305]
 gi|324970650|gb|ADY61428.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM
          5305]
          Length = 74

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+    +Q+         ++ +  +E G+  + + N+  +A TL   L +L+
Sbjct: 12 FAQRVRALRRGKGDSQESFAYACELNRTDMGGIERGERNVALRNIERIAATLGISLSELM 71


>gi|256394949|ref|YP_003116513.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256361175|gb|ACU74672.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 193

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     T   + +R   + S +S +ETG+  I +D ++ +A  L T L +L
Sbjct: 10 LVRRRIRTLRLARGWTLDSLASRCDLSPSNLSRIETGQRRIALDQLVPIARALGTTLDQL 69

Query: 81 LKP 83
          ++P
Sbjct: 70 VEP 72


>gi|229074136|ref|ZP_04207183.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18]
 gi|228709030|gb|EEL61156.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L   +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 EELM 65


>gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri
          DSM 555]
          Length = 268

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N + IR +  LTQKE+        + I   E  +   ++D +  +A  L  
Sbjct: 4  GENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENNRRKPSVDTLDKIAKVLGV 56


>gi|328949058|ref|YP_004366395.1| hypothetical protein Tresu_2229 [Treponema succinifaciens DSM
          2489]
 gi|328449382|gb|AEB15098.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 109

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R  F+ N +  RK+  + Q ++    G + ++I+ +E GK   + + +  +A +L  
Sbjct: 4  QTLRQQFIQNLKFFRKQKGMRQLDLALEIGKSSNYINSIENGKYFPSPETIESIARSLGI 63

Query: 76 PLWKLL 81
             +L 
Sbjct: 64 EPVRLF 69


>gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171]
 gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|288959078|ref|YP_003449419.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288911386|dbj|BAI72875.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 222

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+ A L+Q+++ +  G +Q  I++LETG+  + +D  + LA  L      LL
Sbjct: 8  MRELRQAAGLSQEKLADLAGTSQPQINKLETGQRKMTVDWAVKLAGPLGIEPAVLL 63


>gi|269793184|ref|YP_003318088.1| transcriptional regulator, XRE family [Thermanaerovibrio
          acidaminovorans DSM 6589]
 gi|269100819|gb|ACZ19806.1| transcriptional regulator, XRE family [Thermanaerovibrio
          acidaminovorans DSM 6589]
          Length = 124

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R +AK+ Q E+  R G +Q+++S +ETGK   + + +   A  L   L +L  
Sbjct: 4  GERIRRARLKAKMEQGELARRIGISQAFLSRIETGKRGCSSEILERAARALGVGLEELCS 63

Query: 83 P 83
          P
Sbjct: 64 P 64


>gi|261414485|ref|YP_003248168.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|261370941|gb|ACX73686.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|302327908|gb|ADL27109.1| putative transcriptional regulator [Fibrobacter succinogenes
          subsp. succinogenes S85]
          Length = 78

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F N   + R +  L+Q+E+       +++I  +E  +  I+  + I L   LD  + +L
Sbjct: 13 FGNLVHDARVKKGLSQEELGFELDLHRTYIGMIERAERNISFFHAIKLIQYLDINIKEL 71


>gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200]
 gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407]
 gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407]
 gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048]
 gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273]
 gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272]
 gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272]
 gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676]
 gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603]
 gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185]
 gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18]
 gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42]
 gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29]
 gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28]
 gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28]
          Length = 272

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3]
 gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196]
 gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
 gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24]
 gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342]
 gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621]
 gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3]
 gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3]
          Length = 277

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293]
 gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|182414108|ref|YP_001819174.1| XRE family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841322|gb|ACB75574.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1]
          Length = 96

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLW 78
           I   N + +R++ +LTQ+++  R G    +   +E G    + +  +  LA  L  P W
Sbjct: 14 EILRKNLKRLREKQRLTQQDLAERAGIDYKYAQRIEAGHWPGLQLKTIEKLAEALGVPAW 73

Query: 79 KLLKP 83
          +LLKP
Sbjct: 74 RLLKP 78


>gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97]
 gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842]
 gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187]
 gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1]
 gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187]
 gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC
          10987]
 gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus
          cereus G9241]
 gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus
          cereus G9241]
          Length = 262

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925]
 gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925]
          Length = 121

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    + +RK  KL+QKE   + G     I + E+G S  +I+ +I ++   +     
Sbjct: 1  MIFSQKIQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTSYPSINELIKISDVFNITTDS 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|270291339|ref|ZP_06197561.1| transcriptional regulator [Pediococcus acidilactici 7_4]
 gi|304385092|ref|ZP_07367438.1| possible transcriptional regulator [Pediococcus acidilactici DSM
          20284]
 gi|270280185|gb|EFA26021.1| transcriptional regulator [Pediococcus acidilactici 7_4]
 gi|304329286|gb|EFL96506.1| possible transcriptional regulator [Pediococcus acidilactici DSM
          20284]
          Length = 66

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  L+Q E+ N  G  +  I  +E G     +   + +   LD  L  L 
Sbjct: 4  QRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDLF 61


>gi|228925015|ref|ZP_04088145.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228834678|gb|EEM80187.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 65

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L T +  + 
Sbjct: 2  NKIAELRKEKLISQEKLAAKVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59


>gi|283795173|ref|ZP_06344326.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1]
 gi|291076818|gb|EFE14182.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1]
          Length = 123

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ RK   LTQ+E+ +R+G     I  +E G    + + +  L  +L      L 
Sbjct: 9  LGQCVRDARKRCGLTQQELADRSGMGLRHIQNIEYGLVNPSYECLDALVKSLGISANLLF 68

Query: 82 KP 83
           P
Sbjct: 69 HP 70


>gi|237809224|ref|YP_002893664.1| transcriptional regulator, XRE family [Tolumonas auensis DSM
          9187]
 gi|237501485|gb|ACQ94078.1| transcriptional regulator, XRE family [Tolumonas auensis DSM
          9187]
          Length = 97

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R E  + Q+++    G A+S + ++E G+    +  ++ +A  L     +L+
Sbjct: 25 FGKAVRATRLEQGVGQEKLAGLAGVARSHMGKIERGEHMPTLALILKIAAALGISAAELM 84


>gi|146300783|ref|YP_001195374.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146155201|gb|ABQ06055.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 82

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 7/72 (9%)

Query: 17 RERMIFVNNFRNIRKE-------AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          +ER+       ++R +         ++Q+E+  RTG+A++ I ++E G++   I+ +  +
Sbjct: 8  KERIKLGKRIMHLRNQCINKDNGKPISQEELGLRTGYAKNHIGKIERGQTNPKIETLFSI 67

Query: 70 AHTLDTPLWKLL 81
          A  L+  + +L 
Sbjct: 68 AMELNVDIRELF 79


>gi|39937189|ref|NP_949465.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          CGA009]
 gi|39651047|emb|CAE29570.1| possible transcriptional regulator, XRE family [Rhodopseudomonas
          palustris CGA009]
          Length = 116

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    ++ R    L Q E+  + G   + +S  E+G    + DN+  LA  LD     L
Sbjct: 9  IFQQRLKDARTLRGLNQAELAGKAGLPAASVSHFESGPRKPSFDNLKALASALDVTTDYL 68

Query: 81 L 81
          L
Sbjct: 69 L 69


>gi|88797514|ref|ZP_01113103.1| hypothetical protein MED297_10191 [Reinekea sp. MED297]
 gi|88779686|gb|EAR10872.1| hypothetical protein MED297_10191 [Reinekea sp. MED297]
          Length = 507

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK+  LT +++  R          + S++S +E GK T ++D
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKQNNLTMEDLSARCIRVDPDSAPSVSYLSMIERGKRTPSLD 63

Query: 65 NMIILAHTLDT 75
           + ++A     
Sbjct: 64 MLEVIAAVFQK 74


>gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa
          PACS2]
 gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719]
 gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192]
 gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719]
 gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192]
 gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 199

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 5  KRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R  P  +    R E        R +RK   LT  E+  ++     +IS+LE   +  +I
Sbjct: 2  PRPSPPDATDTPRSETHFLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSI 61

Query: 64 DNMIILAHTLDT 75
            +  +A +L  
Sbjct: 62 PALFNIARSLGV 73


>gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51]
 gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51]
          Length = 276

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++ R+   LTQ E+  R G AQ+ ISE+E G S  +  +++ +A     
Sbjct: 6  RLKHARRLKGLTQTELAERAGIAQASISEIERGLSRSS-SHLVKIAQICGV 55


>gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 199

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+  +T   +   TG + S +S LE+G    +++ ++ +A   + PL  L+
Sbjct: 18 VGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 77


>gi|124010375|ref|ZP_01695021.1| transcriptional regulator [Microscilla marina ATCC 23134]
 gi|123983542|gb|EAY24007.1| transcriptional regulator [Microscilla marina ATCC 23134]
          Length = 121

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R+  KL+QKE+       QS  S++E GK+      +  +   L+  + +L  
Sbjct: 4  GDKIRKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNVEVAELFT 63


>gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 106

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK  +LTQ E+  R G ++  +S  E G S  +++ ++ +   LDT    LL
Sbjct: 6  FGERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYLL 65


>gi|158316684|ref|YP_001509192.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112089|gb|ABW14286.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 260

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R +   P         R +     R +R+    T +++      +  ++SE+E G+   +
Sbjct: 21 RPESAGPPAEPVAPPLRRLIGGVLRRLRQAQGRTLRDVAEAAQVSMPYLSEVERGRKEAS 80

Query: 63 IDNMIILAHTLDTPLWKLL 81
           + +  +   L+  L  LL
Sbjct: 81 SEVLAAICRALNIRLVDLL 99


>gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL
          1112]
 gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL
          1112]
          Length = 135

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N  R IRK+  ++Q ++   TG   S +SE E G      D +  +A  L+  L
Sbjct: 2  NRIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSL 55


>gi|269961337|ref|ZP_06175702.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833888|gb|EEZ87982.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 518

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKEPAWFL 80


>gi|254511223|ref|ZP_05123290.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221534934|gb|EEE37922.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 208

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T +   ++ G A+S +S++E G+ +   D +  LA  L+  + +L 
Sbjct: 27 LGARVRELRKARNWTLEHAASQAGLARSTLSKIENGQMSPTFDALKKLATGLEISVPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|170758899|ref|YP_001786628.1| putative transcriptional regulator [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169405888|gb|ACA54299.1| putative transcriptional regulator [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 177

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK+  LT KE+   T  +  +IS LE   ++ ++ N+  +   L   L +
Sbjct: 1  MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60

Query: 80 LLK 82
          +LK
Sbjct: 61 ILK 63


>gi|168183094|ref|ZP_02617758.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|182673878|gb|EDT85839.1| DNA-binding protein [Clostridium botulinum Bf]
          Length = 177

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK+  LT KE+   T  +  +IS LE   ++ ++ N+  +   L   L +
Sbjct: 1  MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60

Query: 80 LLK 82
          +LK
Sbjct: 61 ILK 63


>gi|148379223|ref|YP_001253764.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153934065|ref|YP_001383597.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937268|ref|YP_001387146.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|153941321|ref|YP_001390589.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|168178665|ref|ZP_02613329.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|170754457|ref|YP_001780864.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|226948506|ref|YP_002803597.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|237794524|ref|YP_002862076.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|148288707|emb|CAL82789.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152930109|gb|ABS35609.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933182|gb|ABS38681.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|152937217|gb|ABS42715.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|169119669|gb|ACA43505.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|182671253|gb|EDT83227.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|226842469|gb|ACO85135.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|229263464|gb|ACQ54497.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|295318667|gb|ADF99044.1| DNA-binding protein [Clostridium botulinum F str. 230613]
 gi|322805558|emb|CBZ03123.1| transcriptional regulator, MerR family, near polyamine
          transporter [Clostridium botulinum H04402 065]
          Length = 177

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK+  LT KE+   T  +  +IS LE   ++ ++ N+  +   L   L +
Sbjct: 1  MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60

Query: 80 LLK 82
          +LK
Sbjct: 61 ILK 63


>gi|86157299|ref|YP_464084.1| transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773810|gb|ABC80647.1| transcriptional regulator, XRE family with cupin sensor domain
          protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 192

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R +  L+ +++   +G +++ + ++E G+S   I+ +  ++  L  P   L
Sbjct: 11 VVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSAL 70

Query: 81 LK 82
          + 
Sbjct: 71 IT 72


>gi|283782136|ref|YP_003372891.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068]
 gi|283440589|gb|ADB19031.1| transcriptional regulator, XRE family [Pirellula staleyi DSM
          6068]
          Length = 202

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             + +  +  R++RK    T +++ + +G ++S +SE+E G +   +     +A     
Sbjct: 12 EPLQQLVCDRVRSMRKAKGWTLEQLASLSGVSRSMLSEIERGSANPTLGVAFRIAQAFGM 71

Query: 76 PLWKLL 81
           L  L+
Sbjct: 72 TLGDLV 77


>gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 205

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 13 LVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSLDQL 72

Query: 81 LK 82
          ++
Sbjct: 73 VE 74


>gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 199

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M    RD+P L   +           R +RK+  +T   +   TG + S +S LE+G   
Sbjct: 1  MKEHDRDDPELESVLSG----VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRR 56

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +++ M+ +A   + PL  L+
Sbjct: 57 PSLELMLPIARAHEVPLDDLV 77


>gi|94967258|ref|YP_589306.1| XRE family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94549308|gb|ABF39232.1| transcriptional regulator, XRE family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 119

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +   + R+  +++Q E+  R G ++  I+ +E G   + I    +LA  LD    +L
Sbjct: 25 LFGHRLGSARRARRISQTELGRRIGVSRVTIANIERGGQNVQIAQAFVLAKALDIHPMEL 84

Query: 81 L 81
          +
Sbjct: 85 I 85


>gi|331082365|ref|ZP_08331491.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400851|gb|EGG80452.1| hypothetical protein HMPREF0992_00415 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 90

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                RKE  +TQKE+  +TG  Q+ IS +E G    ++D +  LA  +   L
Sbjct: 32 RAMVAARKERNMTQKELAEKTGITQADISRIENGTRNPSLDMIKRLAKGMGMRL 85


>gi|330399475|ref|YP_004030573.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica
          HKI 454]
 gi|312170212|emb|CBW77251.1| Transcriptional regulator, Cro/CI family [Burkholderia
          rhizoxinica HKI 454]
          Length = 130

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R+   LTQ+++    G AQ+ +S++E G+    +D +  LA  LD  L  L+
Sbjct: 16 GQAIARQRRLRGLTQEQLSEAAGLAQASLSQIERGRVLPGLDRLAQLAQLLDCRLVDLV 74


>gi|316936268|ref|YP_004111250.1| XRE family transcriptional regulator with shikimate kinase
          activity [Rhodopseudomonas palustris DX-1]
 gi|315603982|gb|ADU46517.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Rhodopseudomonas palustris DX-1]
          Length = 305

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R    +++K +   +G ++ +I++LE+GK  ++I  +  ++  L TPL  LL
Sbjct: 15 LGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLEDLL 74


>gi|153008008|ref|YP_001369223.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151559896|gb|ABS13394.1| putative transcriptional regulator, XRE family [Ochrobactrum
          anthropi ATCC 49188]
          Length = 75

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N R  R+E+ LTQ+ +    G  +++I +LE  + +  ++ +  L+  L     +L
Sbjct: 6  IFARNLRLCRQESGLTQERLAEFAGLDRNFIGKLEREECSPTLETIEALSLALQINAERL 65

Query: 81 LK 82
          ++
Sbjct: 66 IE 67


>gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555]
 gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016]
 gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555]
 gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 80

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RK   +T   +  + G   + IS++E  K+  ++  +  +A  L+T   +L
Sbjct: 1  MLGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKANPSMPTLYKIAEALNTTPSEL 60

Query: 81 LK 82
          +K
Sbjct: 61 IK 62


>gi|269965492|ref|ZP_06179610.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269829855|gb|EEZ84086.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 518

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656]
 gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656]
          Length = 147

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +   TQKE+   +G ++S I   E G    + + +  +A++L    + 
Sbjct: 1  MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60

Query: 80 LLKP 83
          +  P
Sbjct: 61 MSDP 64


>gi|163938083|ref|YP_001642967.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229165063|ref|ZP_04292859.1| Transcriptional regulator Xre [Bacillus cereus AH621]
 gi|163860280|gb|ABY41339.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228618448|gb|EEK75477.1| Transcriptional regulator Xre [Bacillus cereus AH621]
          Length = 67

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A TL+  +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKTLNVSI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 DELM 65


>gi|86739571|ref|YP_479971.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566433|gb|ABD10242.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 497

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILA 70
                  +      R  R+   LTQ+++ +R GF QS++S++E+G+  I +I  +  +A
Sbjct: 10 PPRSTPTSVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIA 69

Query: 71 HTLDTPLWKL-LKP 83
            L      + L P
Sbjct: 70 RNLALSPEDVGLAP 83


>gi|28900055|ref|NP_799710.1| hypothetical protein VPA0200 [Vibrio parahaemolyticus RIMD
          2210633]
 gi|260362248|ref|ZP_05775227.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          K5030]
 gi|260880630|ref|ZP_05892985.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          AN-5034]
 gi|308095335|ref|ZP_05905081.2| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          Peru-466]
 gi|28808338|dbj|BAC61543.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
          2210633]
 gi|308086815|gb|EFO36510.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          Peru-466]
 gi|308092173|gb|EFO41868.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          AN-5034]
 gi|308115606|gb|EFO53146.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          K5030]
          Length = 518

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 114

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI       + +E  +TQ E    TG AQS IS+ +  K+  + D +++++  LD   ++
Sbjct: 1  MIISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKRKKTNPSADKIMVISDVLDVSPFE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLQ 63


>gi|291445816|ref|ZP_06585206.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291348763|gb|EFE75667.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 205

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                R  R+ A+L+ +++ + TG +  ++S++E G    + D +  +A  L      L
Sbjct: 47  LGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 105


>gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 143

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +   TQKE+   +G ++S I   E G    + + +  +A++L    + 
Sbjct: 1  MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60

Query: 80 LLKP 83
          +  P
Sbjct: 61 MSDP 64


>gi|317053889|ref|YP_004117914.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316951884|gb|ADU71358.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 182

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        R+ A L+  E+  R G A+S +S+LE G    +I+ +  L   L+ P  +L
Sbjct: 7  IIAAGLVRERQRAGLSLTEVARRAGVAKSTLSQLEAGNGNPSIETLWSLCVALNIPFARL 66

Query: 81 LKP 83
          ++P
Sbjct: 67 MEP 69


>gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius
          SK126]
 gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius
          SK126]
          Length = 169

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|163851665|ref|YP_001639708.1| helix-turn-helix domain-containing protein [Methylobacterium
          extorquens PA1]
 gi|218530471|ref|YP_002421287.1| XRE family transcriptional regulator [Methylobacterium
          chloromethanicum CM4]
 gi|240138832|ref|YP_002963307.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
 gi|254561435|ref|YP_003068530.1| XRE family transcriptional regulator [Methylobacterium extorquens
          DM4]
 gi|163663270|gb|ABY30637.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1]
 gi|218522774|gb|ACK83359.1| transcriptional regulator, XRE family [Methylobacterium
          chloromethanicum CM4]
 gi|240008804|gb|ACS40030.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens AM1]
 gi|254268713|emb|CAX24672.1| putative transcriptional regulator, XRE family [Methylobacterium
          extorquens DM4]
          Length = 201

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +  ER       +  R +R+E  L+  ++ +  G +   IS++E G  + ++ ++  +A
Sbjct: 9  PVAEERPLEKALGHQVRLLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIA 68

Query: 71 HTLDTPLWKLL 81
            L+ P+  L 
Sbjct: 69 SALNVPITALF 79


>gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232]
 gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo]
 gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC
          10782]
 gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232]
 gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str.
          Manfredo]
 gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC
          10782]
          Length = 254

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   LTQKE+        + I+  E G  T   + +  LA+ L   +  L  
Sbjct: 11 GSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGFRTPKKNTLFKLANALSVTIDDLFP 70

Query: 83 P 83
          P
Sbjct: 71 P 71


>gi|302520593|ref|ZP_07272935.1| predicted protein [Streptomyces sp. SPB78]
 gi|302429488|gb|EFL01304.1| predicted protein [Streptomyces sp. SPB78]
          Length = 211

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                R +R+   L+   +  R+G  ++ +S LE G     ++ +  +   L  PL
Sbjct: 45  VGARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPL 100


>gi|256848879|ref|ZP_05554313.1| predicted protein [Lactobacillus crispatus MV-1A-US]
 gi|256714418|gb|EEU29405.1| predicted protein [Lactobacillus crispatus MV-1A-US]
          Length = 115

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R    NN + +RK+  L Q E+      +Q  I   ETG++    D + ILA       
Sbjct: 5  DRKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAIPGSDTLKILADYFQVST 64

Query: 78 WKLL 81
           +LL
Sbjct: 65 DELL 68


>gi|255038320|ref|YP_003088941.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254951076|gb|ACT95776.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 124

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R IR +  L+Q+ + +  G + +   ++E G++ +++  +  +A  LD PL +LL
Sbjct: 9  EKIRQIRLQKGLSQENMADMLGLSTTAYGDIERGRTELSVSRLENVAKLLDVPLPELL 66


>gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803]
 gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803]
          Length = 421

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+ KLTQ+++ +     +S++S++E G    + + +  L++ L+  +   
Sbjct: 1  MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59

Query: 81 L 81
           
Sbjct: 60 F 60


>gi|300776282|ref|ZP_07086140.1| MerR family transcriptional regulator [Chryseobacterium gleum
          ATCC 35910]
 gi|300501792|gb|EFK32932.1| MerR family transcriptional regulator [Chryseobacterium gleum
          ATCC 35910]
          Length = 492

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    +  R++   + +++  +TG ++S+++E+E GK     D +I L+  L     
Sbjct: 9  KTVFGLKLKQQRQKRNWSLQDLAVKTGLSKSYLNEIENGKKYPKHDKIIQLSEALSCTFD 68

Query: 79 KLL 81
           L+
Sbjct: 69 DLV 71


>gi|222100228|ref|YP_002534796.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359]
 gi|221572618|gb|ACM23430.1| Helix-turn-helix domain protein [Thermotoga neapolitana DSM 4359]
          Length = 113

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK   LTQK++  + G +QS +S++ETG+  I+I  +  +   L 
Sbjct: 39 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 90


>gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97]
 gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97]
          Length = 421

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+ KLTQ+++ +     +S++S++E G    + + +  L++ L+  +   
Sbjct: 1  MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59

Query: 81 L 81
           
Sbjct: 60 F 60


>gi|125623644|ref|YP_001032127.1| hypothetical protein llmg_0793 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124492452|emb|CAL97394.1| CI [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070411|gb|ADJ59811.1| hypothetical protein LLNZ_04110 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 165

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK A L+Q+ + ++ G  +S IS  E+G+    +  M+ L + L      L+
Sbjct: 6  FAERLKEARKAANLSQQALADKIGRTKSTISRWESGERNPKMFEMVELENILGIQARDLM 65


>gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181]
 gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181]
          Length = 516

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + I  NN R +R    LT      +   + S +S +E G   I +  +  +A  L T  
Sbjct: 2  QKIVGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIKVSLLQKIAEVLGTSP 60


>gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus
          ATCC 10987]
 gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus]
 gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus]
 gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820]
 gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15]
 gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus
          thuringiensis BMB171]
 gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987]
 gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus]
 gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus]
 gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820]
 gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15]
 gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus
          thuringiensis BMB171]
          Length = 421

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+ KLTQ+++ +     +S++S++E G    + + +  L++ L+  +   
Sbjct: 1  MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59

Query: 81 L 81
           
Sbjct: 60 F 60


>gi|21219819|ref|NP_625598.1| transcriptional regulatory protein [Streptomyces coelicolor
          A3(2)]
 gi|289772984|ref|ZP_06532362.1| transcriptional regulatory protein [Streptomyces lividans TK24]
 gi|14575569|emb|CAC42859.1| putative transcriptional regulatory protein [Streptomyces
          coelicolor A3(2)]
 gi|289703183|gb|EFD70612.1| transcriptional regulatory protein [Streptomyces lividans TK24]
          Length = 201

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T + +  R G ++  + ++E  ++  ++  ++ +   L   +  
Sbjct: 20 QSLARNVKRWRGERGFTLEALAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 79

Query: 80 LL 81
          LL
Sbjct: 80 LL 81


>gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4]
 gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4]
          Length = 216

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +R+   +TQKE  +  G  Q ++S +E GK + +   +I L H    
Sbjct: 13 GLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERGKKSPSDTLLIALCHLYKI 65


>gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272]
 gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272]
          Length = 259

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                 ER+   +  R+ R+ A ++ +E+  R   + S +S++E G ++ ++  +  + 
Sbjct: 20 DHQPSTAERIAIGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRALYRVV 79

Query: 71 HTLDTPLWKLL 81
            L+  +  L 
Sbjct: 80 SELEISMDSLF 90


>gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 318

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE  LTQ+++  + G +   +S  ETG +  ++  ++ LA   D  + +LL
Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSVLVQLAEYYDVEMRELL 65


>gi|257470593|ref|ZP_05634683.1| putative transcriptional regulator [Fusobacterium ulcerans ATCC
          49185]
 gi|317064799|ref|ZP_07929284.1| DNA-binding protein [Fusobacterium ulcerans ATCC 49185]
 gi|313690475|gb|EFS27310.1| DNA-binding protein [Fusobacterium ulcerans ATCC 49185]
          Length = 177

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + IRK    T K++ + T  +  ++S +E   ++ +I N+  +   L   L +
Sbjct: 1  MTLGEKIKIIRKRKNYTLKDLSDMTKLSIGFLSNIERDLNSPSISNLQQICQALAVNLME 60

Query: 80 LLKP 83
          +L P
Sbjct: 61 ILDP 64


>gi|221632745|ref|YP_002521967.1| Helix-turn-helix domain-containing protein [Thermomicrobium
          roseum DSM 5159]
 gi|221156190|gb|ACM05317.1| Helix-turn-helix domain protein [Thermomicrobium roseum DSM 5159]
          Length = 154

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R  R+ A+L+Q  +  R GF  S++S LE+G+     + ++ LA  L+     
Sbjct: 4  FGQLLRRYRESARLSQSRLAQRAGFDHSYVSRLESGRRAPTREAILRLAEALELGPAD 61


>gi|210621162|ref|ZP_03292504.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM
          13275]
 gi|210154899|gb|EEA85905.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM
          13275]
          Length = 199

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK++ LTQ+E+  +   +++ IS+ E+G+   +I ++  ++   D  + +LL
Sbjct: 3  FNEKLQYFRKKSNLTQEELAEKLFVSRTAISKWESGRGMPSISSLKAISEVFDVSIDELL 62


>gi|70734303|ref|YP_257943.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68348602|gb|AAY96208.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 209

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L +R       R IRK  KLT K++  R+G A S +S++E  + +++ + +   A  L  
Sbjct: 17 LIDRTQVGARLRTIRKNQKLTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALGV 76

Query: 76 PLWKLLKP 83
           + +L  P
Sbjct: 77 DIARLFTP 84


>gi|299134624|ref|ZP_07027816.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298590434|gb|EFI50637.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 485

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
               R +F    FR +RK+  L+Q +I    G + S+I+ +E  +  +    ++ LA T
Sbjct: 4  PTETGRKLFVGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAET 63

Query: 73 LDTPLWKL 80
           D  L  L
Sbjct: 64 YDLDLRDL 71


>gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 184

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R  R  A L+  E+  R G A+S +S+LE+G    +++ +  L   L+     L
Sbjct: 9  VIAGSLRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGNPSVETLWALCVALEIQFADL 68

Query: 81 LKP 83
          + P
Sbjct: 69 IDP 71


>gi|167841812|ref|ZP_02468496.1| transcriptional regulator, XRE family with cupin sensor domain
          [Burkholderia thailandensis MSMB43]
          Length = 191

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D  +   +   N  R + +  KLT  E     G ++ ++S++E G++  +I +++ +A 
Sbjct: 5  PDESVLVAVSLGNKIRALWQRLKLTLDETATTAGISKPFLSQVERGRARPSITSLVRIAK 64

Query: 72 TLDTPL 77
           L   +
Sbjct: 65 ALGVTM 70


>gi|152988204|ref|YP_001349378.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150963362|gb|ABR85387.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 195

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M +       L +   R  ++     N R +R +A L+Q+ +      ++  +  +E+G 
Sbjct: 1  MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 60

Query: 59 STINIDNMIILAHTLDTPLWKLLK 82
            +++  +  +A  L      L++
Sbjct: 61 VNVSLSTLDRIAAALGVLFPDLVQ 84


>gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118]
 gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain
          [Rhodoferax ferrireducens T118]
          Length = 201

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R +   T ++    TG A+S +S++E G  +   D +I LA  L   + +L
Sbjct: 13 LLGQRIRAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDALIKLATGLQIDISEL 72

Query: 81 LKP 83
           +P
Sbjct: 73 FEP 75


>gi|39937845|ref|NP_950121.1| anaerobic benzoate catabolism transcriptional regulator
          [Rhodopseudomonas palustris CGA009]
 gi|39651705|emb|CAE30227.1| possible Shikimate kinase with a Helix-turn-helix domain
          [Rhodopseudomonas palustris CGA009]
          Length = 305

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R    +++K +   +G ++ +I++LE+GK  ++I  +  ++  L TPL  LL
Sbjct: 15 LGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLEDLL 74


>gi|332285621|ref|YP_004417532.1| transcriptional regulator, Cro/CI family protein [Pusillimonas
          sp. T7-7]
 gi|330429574|gb|AEC20908.1| transcriptional regulator, Cro/CI family protein [Pusillimonas
          sp. T7-7]
          Length = 187

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +R++ + + +++  RTG  +S++S+LE G S  +I  ++ LA   +  + +L+
Sbjct: 7  RLKALRRQYQFSLEQLSQRTGLTKSYLSKLERGVSEPSISTVLKLAQAYEIGVSQLI 63


>gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK160]
 gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK330]
          Length = 170

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|273809592|ref|YP_003344830.1| cI repressor protein [Aggregatibacter phage S1249]
 gi|261410499|gb|ACX80330.1| cI repressor protein [Aggregatibacter phage S1249]
          Length = 219

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R  A LTQ+ + ++    ++ +S +E G++T +  N++ +A     PL  +
Sbjct: 10 VKKARNAAGLTQEALADKLNMTKANVSAMENGRTTPSFINILEMATLAGIPLPHV 64


>gi|224369019|ref|YP_002603183.1| putative transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
 gi|223691736|gb|ACN15019.1| putative transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
          Length = 103

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR   ++TQKE+ +  G +Q+++S +E+G    + D +   A  L      L+
Sbjct: 3  LGQLLKFIRTSKEMTQKEMASLIGISQNYLSLIESGTKNPSSDKLSDFAEALQISKDALI 62


>gi|78060915|ref|YP_370823.1| transcriptional regulator [Burkholderia sp. 383]
 gi|77968800|gb|ABB10179.1| transcriptional regulator, XRE family with cupin sensor domain
          [Burkholderia sp. 383]
          Length = 211

 Score = 53.5 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 1  MPRRKRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP+     P  +DA  + +        R+ RK   LT  ++  R+G A S IS+ E G  
Sbjct: 1  MPKSTVPVPPPTDAAPQLDHQTVGARLRDARKSRGLTLAQLSERSGIAVSTISKAERGDI 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
           +  D    L H L      + 
Sbjct: 61 ALTYDKFAALTHALALDFDTMF 82


>gi|331092590|ref|ZP_08341409.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330400601|gb|EGG80215.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 162

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                RKE KL+Q EI  +    +  +S  E G S  NI+ M  LA      + ++L+
Sbjct: 5  EKLCKYRKERKLSQAEIAEKLNVTRQKVSRWEHGTSVPNIETMKQLAEIYGVNVTEMLQ 63


>gi|319653363|ref|ZP_08007463.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394847|gb|EFV75585.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
          Length = 107

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +  +  + +R++ K++  E+ ++ G A+S++S LE   ++  +I  +  +A  L+ P+  
Sbjct: 1  MIGDRVKKLRQDKKMSLSELADQAGVAKSYLSSLERNLQTNPSIQFLEKIAGVLNVPVDH 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|310830222|ref|YP_003965322.1| probable transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
 gi|308753128|gb|ADO44271.1| probable transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
          Length = 197

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  R    +TQ+ + ++ G    +IS++E G +  ++ ++  ++  L     + +
Sbjct: 8  VGDALRARRIALGITQRVVADQAGLTTGFISQVERGLTAPSLSSLHAISKVLGLSPLQFI 67


>gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
 gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
          Length = 460

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R +  +TQ ++     F+ S+IS +E GK   ++  + ILA  LD PL  LL
Sbjct: 17 VGTNIREVRTKLNMTQAQLAA-PEFSISYISAIERGKIRPSLKALSILARRLDVPLTFLL 75

Query: 82 K 82
          +
Sbjct: 76 E 76


>gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 384

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N   +R+   +TQ+ +  + G ++  +S+ E G +   +D ++ L     T L  
Sbjct: 1  MSFADNLVYLRQHYGVTQEGLAEQLGVSRQTVSKWEAGTNYPEMDKLLALCDLFHTNLDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LMR 63


>gi|291520596|emb|CBK75817.1| Predicted transcriptional regulators [Butyrivibrio fibrisolvens
          16/4]
          Length = 81

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  R  D      A L  R       R+ R +  LTQ+ +  R G  +S IS +E+GK  
Sbjct: 1  MKNRYADGVVTPQA-LAARNSIAQELRDTRHQLNLTQESLAQRVGTKKSNISRMESGKYN 59

Query: 61 INIDNMIILAHTLDT 75
           ++D ++ +A ++  
Sbjct: 60 PSLDFLVKVAESMGK 74


>gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603]
 gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603]
          Length = 107

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  ++  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176]
 gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176]
          Length = 209

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  +  RK  K +Q EI    G  Q  + + ETG+ST +   +  LA  LDT    L
Sbjct: 1  MFADRLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDTTADVL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225572080|ref|ZP_03780944.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM
          10507]
 gi|225040414|gb|EEG50660.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM
          10507]
          Length = 192

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R E   +Q+ +  +   ++  IS  E GKS  +++++++L+   +  L KL+
Sbjct: 3  LGKQIRRYRNERSFSQETLAEKVYVSRQTISNWENGKSYPDVNSLVLLSEAFEVSLDKLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC
          27755]
 gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787]
 gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC
          27755]
 gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787]
 gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 211

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    + +  +   LD    +LL
Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70


>gi|163747316|ref|ZP_02154670.1| possible transcriptional regulator, XRE family protein
          [Oceanibulbus indolifex HEL-45]
 gi|161379426|gb|EDQ03841.1| possible transcriptional regulator, XRE family protein
          [Oceanibulbus indolifex HEL-45]
          Length = 69

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N + +R+   L+Q+E+ +R   ++  + +LE  K   ++D +  +A  L+    
Sbjct: 4  RDRVALNIQELRRARSLSQEELAHRADVSRGHMGKLENAKFAASLDLLERIAKALNVDPA 63

Query: 79 KLLK 82
          +L  
Sbjct: 64 ELFT 67


>gi|27366645|ref|NP_762172.1| putative transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|320158536|ref|YP_004190914.1| putative transcriptional regulator [Vibrio vulnificus MO6-24/O]
 gi|27358211|gb|AAO07162.1|AE016808_182 Predicted transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319933848|gb|ADV88711.1| predicted transcriptional regulator [Vibrio vulnificus MO6-24/O]
          Length = 207

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      + +R    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLKIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|24378654|ref|NP_720609.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gi|24376514|gb|AAN57915.1|AE014865_6 putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 117

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/63 (12%), Positives = 24/63 (38%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +    N  R  R+   ++Q+ +  + G    +I+++E     +++  +  +   L     
Sbjct: 8  QKYVANKVRYHRQAQGISQESLSEKAGLGLKYINQIENQNHNLSLQTLEKVIEALGMTPE 67

Query: 79 KLL 81
             
Sbjct: 68 DFF 70


>gi|152976782|ref|YP_001376299.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152025534|gb|ABS23304.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
          391-98]
          Length = 181

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 62


>gi|331702621|ref|YP_004399580.1| helix-turn-helix domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129964|gb|AEB74517.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL
          B-30929]
          Length = 201

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R E  LTQK++ +    ++  IS  ET  S  +ID++I L+      L  LL
Sbjct: 3  FGARLKTERIELGLTQKQVADTMNVSRQTISSWETENSYPDIDSLIQLSDLFHISLDVLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|331697390|ref|YP_004333629.1| helix-turn-helix domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326952079|gb|AEA25776.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
          CB1190]
          Length = 190

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R  R    L+  E+  R G ++S +S+LE+G    +++ +  LA  L  P  +L++
Sbjct: 17 ADAVRRERTRRDLSLGELARRAGLSKSTLSQLESGAGNPSVETLWALAVALGVPFARLVE 76


>gi|293396666|ref|ZP_06640942.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
 gi|291420930|gb|EFE94183.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
          Length = 197

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N R  R++A L+Q  +   +G ++  ++ +E G   +++  +  LA  L+     L++
Sbjct: 27 SNVRGYRQQAGLSQMALAGLSGVSRRMLAGIEAGDRNVSLAVLDKLAAALEVSFTDLIQ 85


>gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264]
 gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264]
          Length = 293

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    ++ RK+AK++Q+++  + G ++  +++ ETG     I+N+  ++   +  + +
Sbjct: 1  MTFAEKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 185

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +  R IRKE   T + +  +TG ++  +S++E G S  ++D++  +   L++P+  
Sbjct: 6  ETIGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQPSLDSLWKITKALESPIIH 65

Query: 80 LLK 82
            +
Sbjct: 66 FFE 68


>gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 193

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    LT + +  R G ++S IS +E  +S+     +  L+  L   L  L 
Sbjct: 12 LAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAESSPTATVLERLSAGLGVSLAALF 71

Query: 82 KP 83
           P
Sbjct: 72 SP 73


>gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787]
 gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787]
          Length = 157

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    + +  +   LD    +LL
Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70


>gi|114765017|ref|ZP_01444164.1| DNA binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114542564|gb|EAU45589.1| DNA binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 189

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+   +   +G ++S +S++E G+S   +  +  L   L      LL+
Sbjct: 16 RLKEARQARGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRALQVDFAGLLE 73


>gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia
          enterocolitica subsp. palearctica Y11]
          Length = 188

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+E   +  +   +TG +++ + ++E G+S+  +  +  +A  L+    + L+
Sbjct: 9  GNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQFLE 68


>gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 189

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 25/66 (37%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                   N + IRK   L+   +   TG +++ + ++E G S   I  +  +   L  
Sbjct: 2  EPIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGI 61

Query: 76 PLWKLL 81
              L+
Sbjct: 62 SFTTLI 67


>gi|309776164|ref|ZP_07671155.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916115|gb|EFP61864.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 90

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R R  P+  +     + +       +R E  LTQ E+ N  G  +++I  +E G    ++
Sbjct: 8  RIRPIPYDKEDKELLKEM-GKKINRLRVEKNLTQNELANMAGVHKNFICIIENGVQNPSL 66

Query: 64 DNMIILAHTLDTPLWKLL 81
           ++  +   LDT L++  
Sbjct: 67 LSLYHIIRVLDTSLYEFF 84


>gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 200

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 14 LVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 73

Query: 81 LK 82
          ++
Sbjct: 74 VE 75


>gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism
          [Hydrogenobacter thermophilus TK-6]
 gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism
          [Hydrogenobacter thermophilus TK-6]
 gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family
          [Hydrogenobacter thermophilus TK-6]
          Length = 336

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R +  L+Q+E+    G  +S +S +E+G++  +++  I L+  L   + +L 
Sbjct: 3  NKVKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAVPSVEYAIKLSKALGCTVEELF 60


>gi|288556445|ref|YP_003428380.1| hypothetical protein BpOF4_17235 [Bacillus pseudofirmus OF4]
 gi|288547605|gb|ADC51488.1| hypothetical protein BpOF4_17235 [Bacillus pseudofirmus OF4]
          Length = 97

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            F    R  R  A LT  E+  R+   +++ISE+E GK  I++D ++ LA + +
Sbjct: 11 ESFGVIIRTKRNRAGLTIAELAWRSDLTETYISEIENGKRNISLDIIMKLAASFE 65


>gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 257

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F       RK+ KLTQKE+  +   +   +S+ E G S  +I  +  LA  L   + 
Sbjct: 6  KEQFGRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSSMPDIALLTPLAEALGVTVT 65

Query: 79 KLLK 82
          +LL+
Sbjct: 66 ELLE 69


>gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 112

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +++RKEAKLTQK+I ++ GF+Q    + E+GK   + + +   A   +     L
Sbjct: 1  MFSERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGKKKPSAETLEKFASFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|219666089|ref|YP_002456524.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219536349|gb|ACL18088.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 68

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+E  LTQKE+  + G ++  I+ +ETGK   ++     LA      + +L 
Sbjct: 3  NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWLAYDLAKLFKVSIEELF 60


>gi|330503455|ref|YP_004380324.1| putative helix-turn-helix transcriptional regulatory protein
          [Pseudomonas mendocina NK-01]
 gi|328917741|gb|AEB58572.1| putative helix-turn-helix transcriptional regulatory protein
          [Pseudomonas mendocina NK-01]
          Length = 271

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R +R++A L+Q E+   TG +Q  +S +ETG++  +   +  L   L+ PL +
Sbjct: 16 GLQLRQLRRQASLSQLELALLTGVSQRHLSCIETGRAKPSPATLHALLMALEAPLEQ 72


>gi|329117060|ref|ZP_08245777.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907465|gb|EGE54379.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 183

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +RK+  L+QKE+    G +   IS +E   +     N+  +A   +     L 
Sbjct: 5  FAPNLIRLRKQKGLSQKELAQELGISSQTISNIENQSAYPTFTNLEKIAGFFNASPTDLF 64


>gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 214

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  N + IR    LTQ ++ +    ++  IS  E G++   I+ +I  A      +  LL
Sbjct: 4  YGENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAEPKIETIIKTAEVFQVTIDTLL 63

Query: 82 K 82
          K
Sbjct: 64 K 64


>gi|313113313|ref|ZP_07798912.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310624366|gb|EFQ07722.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 120

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK  K+TQ ++  ++  +  +I+ +E GK   + D +  + H L   L  ++
Sbjct: 11 LGKQIKAVRKAMKMTQDQLALKSNVSVKYIANIENGKQNPSFDILSAILHVLPLSLDSVI 70

Query: 82 KP 83
           P
Sbjct: 71 NP 72


>gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 117

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R +  L+Q+++    G   S++  +E     ++++  I ++  L+  L  LL
Sbjct: 13 VGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISISTVLEISLDYLL 72


>gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44]
 gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44]
          Length = 149

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174]
 gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174]
          Length = 112

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK   L Q E+  + G  Q ++S +E   S  +I+ ++ LA+ L+T   + L
Sbjct: 13 GKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISIPSIEVIMKLAYVLNTTPDEFL 71


>gi|153837553|ref|ZP_01990220.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
          AQ3810]
 gi|149749149|gb|EDM59954.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus
          AQ3810]
          Length = 518

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|296330585|ref|ZP_06873063.1| transcriptional regulator, XRE family protein [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305674633|ref|YP_003866305.1| XRE family transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296152267|gb|EFG93138.1| transcriptional regulator, XRE family protein [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305412877|gb|ADM37996.1| transcriptional regulator, XRE family protein [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    + IRK+ K++Q E     GF  S++S +E GK+  +I  +  +   L+ 
Sbjct: 7  FGCLLQKIRKKRKMSQIEFAQLLGFTASYVSRVERGKANPSIQAIEKITKQLNI 60


>gi|288962833|ref|YP_003453127.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288915099|dbj|BAI76583.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 226

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  R+       D +           +  R+   LT K++  RTG A S +S++E G+ +
Sbjct: 1  MAARRNGLMRDHDELANTTSRLGVCLKAARRARGLTLKQVAERTGMALSTLSKVENGQMS 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          +  D ++ L   L   + +L +P
Sbjct: 61 LTYDKLLQLTAGLKIEIAELFEP 83


>gi|258512346|ref|YP_003185780.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479072|gb|ACV59391.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 82

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  RK   L+ +E+  R G + S+I  +E+G    N   + ++A  L   L  L
Sbjct: 4  LAQRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDL 62


>gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 197

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 11 LVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|229027921|ref|ZP_04184076.1| Transcriptional regulator Xre [Bacillus cereus AH1271]
 gi|229170925|ref|ZP_04298528.1| Transcriptional regulator Xre [Bacillus cereus MM3]
 gi|228612591|gb|EEK69810.1| Transcriptional regulator Xre [Bacillus cereus MM3]
 gi|228733435|gb|EEL84262.1| Transcriptional regulator Xre [Bacillus cereus AH1271]
          Length = 67

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L   +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSV 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 EELM 65


>gi|229815931|ref|ZP_04446254.1| hypothetical protein COLINT_02986 [Collinsella intestinalis DSM
          13280]
 gi|229808484|gb|EEP44263.1| hypothetical protein COLINT_02986 [Collinsella intestinalis DSM
          13280]
          Length = 69

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R     N   IR+ + L++ +   + G ++  +  +E+G S + +  +  +A  L T  
Sbjct: 5  ARQNLGENLIAIREASGLSKVDFALQLGISRVLLDLIESGNSNLKLSTLEKIADRLGTQP 64

Query: 78 WKLLK 82
          WKL++
Sbjct: 65 WKLIR 69


>gi|67078349|ref|YP_245967.1| transcriptional regulator [Bacillus cereus E33L]
 gi|66970655|gb|AAY60629.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 87

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + IR E  +TQ E+   T  ++  I  +E G+   ++   I +  +L   L  L 
Sbjct: 27 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 83


>gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831]
 gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 179

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R++   +Q  +  +   ++  +S+ ETGK+  +I+ +I L+   D  + +
Sbjct: 28 MFFGEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKNYPSIEVIINLSDLFDITIDE 87

Query: 80 LLK 82
          LL+
Sbjct: 88 LLR 90


>gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp.
          Nb-311A]
 gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp.
          Nb-311A]
          Length = 483

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              +++     FR IR++  L+Q ++    G + S+++ +E  +  +    ++ LA   
Sbjct: 3  PDPGKKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVTAQILLRLAEAY 62

Query: 74 DTPLWKL 80
          D  L  L
Sbjct: 63 DLDLRDL 69


>gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 184

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     + +RK   L+ +++ + +G +++ IS++E   S+ +   +  LA +L   L +
Sbjct: 5  QLIATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDSSPSASLLGRLAASLGVSLAQ 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1]
 gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5]
 gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1]
 gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5]
          Length = 211

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    + +  +   LD    +LL
Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70


>gi|323528479|ref|YP_004230631.1| Cupin 2 barrel domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323385481|gb|ADX57571.1| Cupin 2 conserved barrel domain protein [Burkholderia sp.
          CCGE1001]
          Length = 215

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R     +   L +  +   + R  RK   LT  E+  R+G A S IS+ E G   +  D 
Sbjct: 10 RASADEAPPAL-DHKLVGGHLRQARKARGLTLAELSERSGIAVSTISKAERGDIALTYDK 68

Query: 66 MIILAHTLDTPLWKLL 81
             LAH+L+     + 
Sbjct: 69 FAALAHSLELEFDAIF 84


>gi|313896884|ref|ZP_07830431.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312974331|gb|EFR39799.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 96

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +++  ER I      + R  A LTQKE+  ++G AQS IS+LE G +  ++  +  LA  
Sbjct: 25 ESLQPERAII-EAMIDARAAAGLTQKELAEKSGIAQSDISKLENGNANPSLRTLQRLAAG 83

Query: 73 LDTPLWKLLKP 83
          +   L     P
Sbjct: 84 MGMRLHLEFLP 94


>gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15]
 gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15]
          Length = 249

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R E   TQ+E+ ++ G +++ I   E G  +   D M  LA+     +  L
Sbjct: 9  VIGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGIRSPKKDTMFDLANAFGISIDDL 68

Query: 81 L 81
           
Sbjct: 69 F 69


>gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 203

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 11 LVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|300853247|ref|YP_003778231.1| putative phage protein with HTH motif [Clostridium ljungdahlii
          DSM 13528]
 gi|300433362|gb|ADK13129.1| putative phage protein with HTH motif [Clostridium ljungdahlii
          DSM 13528]
          Length = 187

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +  +N +  R +  ++Q+E+  R G    +IS LE   +   +++ +  ++  L+     
Sbjct: 1  MLGDNIKKFRTQIGISQRELGRRIGKTGQYISYLEKNMNTNPSLEVLNNISKELNVNTND 60

Query: 80 LLKP 83
          L+KP
Sbjct: 61 LIKP 64


>gi|289522774|ref|ZP_06439628.1| toxin-antitoxin system, antitoxin component, Xre family
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504610|gb|EFD25774.1| toxin-antitoxin system, antitoxin component, Xre family
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 137

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R+ M      + IR++  LTQ E+ +  G +  +I  LE+ +   ++  +  +A  L   
Sbjct: 22 RDLMSLGLKIKRIRQQRGLTQGELASIVGVSSGYIQALESNRRNGSLKILKKIAEALAVD 81

Query: 77 LWKLLK 82
            +LL+
Sbjct: 82 TSELLE 87


>gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583]
 gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583]
 gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 143

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +   TQKE+   +G ++S I   E G    + + +  +A++L    + 
Sbjct: 1  MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60

Query: 80 LLKP 83
          +  P
Sbjct: 61 MSDP 64


>gi|257868622|ref|ZP_05648275.1| DNA binding protein [Enterococcus gallinarum EG2]
 gi|257802786|gb|EEV31608.1| DNA binding protein [Enterococcus gallinarum EG2]
          Length = 172

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R+++ L+Q  +      ++  IS+ E G+   +IDN+++L+      + +
Sbjct: 1  MALAEQLKLYREKSGLSQASVAEELKISRQSISKWENGRGYPDIDNLVLLSKLYQVSIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLQ 63


>gi|91224263|ref|ZP_01259526.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01]
 gi|91191174|gb|EAS77440.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01]
          Length = 518

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|15674195|ref|NP_268370.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|12725279|gb|AAK06311.1|AE006450_4 transcription regulator [Lactococcus lactis subsp. lactis Il1403]
          Length = 102

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +R E KLTQ ++  R G   + +S  E  K   +++ +I L  T D     LL
Sbjct: 6  FGDKLRALRMEKKLTQNDLAARLGIVGASVSSYEKNKQYPSVEVLIQLCQTFDVSADYLL 65


>gi|218892158|ref|YP_002441025.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254234978|ref|ZP_04928301.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719]
 gi|126166909|gb|EAZ52420.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719]
 gi|218772384|emb|CAW28166.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 183

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +RKE +LT  ++  R   +++ IS +E  +S+     +  LA  L   L +
Sbjct: 5  ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|89096264|ref|ZP_01169157.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89089118|gb|EAR68226.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 73

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E     NN +  R +A+LTQ+E+ +R G  +  +S +E GK   ++   + + + + + L
Sbjct: 2  EEKYMKNNVKQARLQAELTQQELADRVGITRQTVSLIEKGKYNPSLKLCLQICYAVQSKL 61

Query: 78 WKLL 81
           +L 
Sbjct: 62 DELF 65


>gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911]
 gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911]
          Length = 187

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N RNIR+   L+       TG +++ + ++E G+S   +  +  +A  L      L+
Sbjct: 13 GENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESNPTVTTLWKIASGLQISFSSLM 71


>gi|331092438|ref|ZP_08341263.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401281|gb|EGG80870.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 190

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +N+R E K T K +   TG +  ++S+LE G ++I ID++  ++  LD  L   
Sbjct: 6  IIGLRIKNLRTEKKYTLKYLSENTGLSIGFLSQLERGMTSIAIDSLDKISKVLDVELSSF 65

Query: 81 LK 82
            
Sbjct: 66 FT 67


>gi|330836178|ref|YP_004410819.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides
          DSM 17374]
 gi|329748081|gb|AEC01437.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374]
          Length = 99

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             IRK   LTQ E+  + G +Q+ IS++E GK  I I  +  LA+ +   +     P
Sbjct: 41 LSEIRKAQNLTQAELAEKVGLSQTDISKIEKGKKRITISRLQELANGMGMDVHITFVP 98


>gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 193

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          ++ E            I   + R  R  A L+  E+  R G A+S +S+LE+G    +++
Sbjct: 3  RQSERTQPTPRPPLGRI-AASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGNPSVE 61

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  ++ TLD P  +L+ P
Sbjct: 62 TLWAISVTLDVPFSRLVDP 80


>gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like,
          DNA-binding domain [Salinibacter ruber M8]
 gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like,
          DNA-binding domain [Salinibacter ruber M8]
          Length = 392

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +        R  RK+A ++QKE+    G   S +S+ E+GK  I    +  LA     P
Sbjct: 4  VDYEALGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVP 63

Query: 77 LWKLL 81
          L  L 
Sbjct: 64 LSSLF 68


>gi|260892045|ref|YP_003238142.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864186|gb|ACX51292.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 118

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +R+   L Q ++    G  +S ++  E G    +++ ++ L+      L +L+
Sbjct: 4  FGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQPSLETLVKLSQLFGVSLDELV 63


>gi|255528296|ref|ZP_05395109.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255508014|gb|EET84441.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 71

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R IR+E  LT  E+ ++TG   S++S++E      ++ ++  ++ +L+ P++  
Sbjct: 1  MLGPKIREIRQEKGLTLNELADKTGLTASYLSQIERNIIDPSLSSLRKISLSLEVPIYTF 60

Query: 81 LK 82
          L 
Sbjct: 61 LT 62


>gi|225378306|ref|ZP_03755527.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans
          DSM 16841]
 gi|83596349|gb|ABC25509.1| transcriptional regulator [Roseburia inulinivorans DSM 16841]
 gi|225209873|gb|EEG92227.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans
          DSM 16841]
          Length = 113

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R + K TQ+ + +  G +   +S +E G++ +++  +  +A+ LDT L +L+
Sbjct: 9  GTRIKERRAKKKWTQEMLASAVGISNPHMSNIERGRTKVSLGTLTDIANALDTTLDELI 67


>gi|86739596|ref|YP_479996.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566458|gb|ABD10267.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 116

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R  R++   +Q  +  R G  ++ I+ +E G   I +   + LA  L+    +LL
Sbjct: 10 LAQSVRKHRRQRGWSQAALAERLGLTRTTITNIEHGAQGITLLTFVRLAEQLNVGAPELL 69


>gi|331014804|gb|EGH94860.1| transcriptional regulator, PbsX family protein [Pseudomonas
          syringae pv. lachrymans str. M302278PT]
          Length = 94

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R+IRK+  LTQ++  + +  +++++S LE G     ID +  LA  L      L+
Sbjct: 7  FGQVLRDIRKQRGLTQEDFSDVS--SRTYLSTLERGLKCPTIDKVAQLAEVLRVHPATLI 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|304394885|ref|ZP_07376769.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304357138|gb|EFM21501.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 182

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N     R+ A L+  E+  R G A+S +S+LE G     I+ +  L  TL+ P  +L
Sbjct: 7  IIANALVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|227545435|ref|ZP_03975484.1| ABC superfamily ATP binding cassette transporter ATPase
          [Lactobacillus reuteri CF48-3A]
 gi|300908481|ref|ZP_07125944.1| ABC superfamily ATP binding cassette transporter ABC protein
          [Lactobacillus reuteri SD2112]
 gi|227184576|gb|EEI64647.1| ABC superfamily ATP binding cassette transporter ATPase
          [Lactobacillus reuteri CF48-3A]
 gi|300893888|gb|EFK87246.1| ABC superfamily ATP binding cassette transporter ABC protein
          [Lactobacillus reuteri SD2112]
          Length = 293

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +    +R E +L+Q E+  R    +  +S+ E G +  +ID +I+LA   +  L +L+
Sbjct: 5  FPHQLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLI 64


>gi|160916217|ref|ZP_02078424.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991]
 gi|158431941|gb|EDP10230.1| hypothetical protein EUBDOL_02244 [Eubacterium dolichum DSM 3991]
          Length = 69

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++ +I  NN R++RK   L+Q E+   +G ++  IS +ETG+        ++L   L+ 
Sbjct: 1  MKKELILKNNIRSVRKAKGLSQAELAAMSGVSRITISSIETGQFNPTAKLALLLCIALEQ 60

Query: 76 PLWKLL 81
              L 
Sbjct: 61 KFEDLF 66


>gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str.
          Langeland]
 gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str.
          Langeland]
 gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str.
          230613]
          Length = 121

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + +R EAKL+QK++  + G + S +  +E+GK   N + +  +A+     +  L
Sbjct: 4  LGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNKETIQKIANFFGVSIDYL 62


>gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
 gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1]
          Length = 222

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R RD     + +  E  I   N R +R++  LT  E   R G +++ +S++E  +++ ++
Sbjct: 22 RDRDPGAPVEELEIESAI-GRNVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSL 80

Query: 64 DNMIILAHTLDTPLWKLLK 82
            + +LA   D P+  L +
Sbjct: 81 STLALLAKGFDVPVTSLFR 99


>gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis
          DSM 16823]
 gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823]
          Length = 273

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + +RK  K +Q+E+    G  +S  S  E   +   ID +I L+     P+  LL
Sbjct: 3  LGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAEPGIDTLIALSSYYGVPIDALL 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          VMC66]
 gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          VMC66]
          Length = 170

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 183

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R +  L+ +E+  +   + S++S++E GK++ +I+N+  +A +LD  +  L++
Sbjct: 5  GERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLIE 64


>gi|330825357|ref|YP_004388660.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329310729|gb|AEB85144.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 81

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H  D +L       +  R  R+   ++Q+++ + +   +S++S +E G     + +++ +
Sbjct: 8  HAHDPVLTA---LGDAIRRSRRARGISQEDLAHVSAVDRSYMSSIERGVQNPGLVSIVRI 64

Query: 70 AHTLDTPLWKLL 81
          A  +D  + +L+
Sbjct: 65 ARAMDMTVTELM 76


>gi|329920508|ref|ZP_08277240.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
          1401G]
 gi|328936184|gb|EGG32637.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
          1401G]
          Length = 87

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|317055988|ref|YP_004104455.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315448257|gb|ADU21821.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 179

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R    E  LTQ E+  RTG ++S+IS+  +GK     D + ILA  L T    LL
Sbjct: 4  FAENLRTAMAERSLTQAELSKRTGISKSFISQYLSGKFKPREDKLSILAQALGTTKGALL 63


>gi|229074883|ref|ZP_04207892.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-18]
 gi|228708220|gb|EEL60384.1| Transcriptional regulator, XRE [Bacillus cereus Rock4-18]
          Length = 59

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++Q+E+   +G  +++IS LE GK    I+ +  LA  L     +L++
Sbjct: 1  MSQEELAFNSGLDRTYISLLERGKRKPTINTLFALARALKVNPSQLIE 48


>gi|192293630|ref|YP_001994235.1| anaerobic benzoate catabolism transcriptional regulator
          [Rhodopseudomonas palustris TIE-1]
 gi|192287379|gb|ACF03760.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Rhodopseudomonas palustris TIE-1]
          Length = 305

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R    +++K +   +G ++ +I++LE+GK  ++I  +  ++  L TPL  LL
Sbjct: 15 LGRHVRTMRGRRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLRRISEALATPLEDLL 74


>gi|170289284|ref|YP_001739522.1| XRE family transcriptional regulator [Thermotoga sp. RQ2]
 gi|170176787|gb|ACB09839.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2]
          Length = 110

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK   LTQK++  + G +QS +S++ETG+  I+I  +  +   L 
Sbjct: 36 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87


>gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC
          29149]
 gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC
          29149]
          Length = 248

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE   TQKE+  +   +   IS+ E G S  +I  +  LA  L   + +LL
Sbjct: 12 FGGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLSLPDIALLEPLADILGVTVAELL 71

Query: 82 K 82
          K
Sbjct: 72 K 72


>gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 222

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R RD     + +  E  I   N R +R +  LT  E   R G +++ +S++E  +++ ++
Sbjct: 22 RDRDPAAPVEELEIEAAI-GRNVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSL 80

Query: 64 DNMIILAHTLDTPLWKLLK 82
            + +LA   D P+  L +
Sbjct: 81 STLALLAKGFDVPVTSLFR 99


>gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
 gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
          Length = 102

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R + KL+Q  +  R G + S++S LE G+    +  +  +A  L  P+  L 
Sbjct: 4  GQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPLSTLQRIAAALVMPVEILF 62


>gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304]
 gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304]
          Length = 373

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N   +R+E  +TQ+E+    G ++  +S+ E+G+S  +I  + I+A   D  +  LL
Sbjct: 7  GRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQSYPDILLLPIIASYFDKTVDDLL 65


>gi|169334596|ref|ZP_02861789.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259313|gb|EDS73279.1| hypothetical protein ANASTE_00999 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 117

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 29/57 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++     +  RK+  +TQ+ +      + S +S +E G + +++  ++ +A+ L+  
Sbjct: 6  LMLGEKLKQQRKKQGITQETLAEYVDLSVSHLSHIENGSTKVSLQTIVNIANILNIS 62


>gi|84687520|ref|ZP_01015396.1| DNA-binding protein, putative [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84664429|gb|EAQ10917.1| DNA-binding protein, putative [Rhodobacterales bacterium
          HTCC2654]
          Length = 209

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 1  MPRRKRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP   R       +    + +      R++RK    T ++  N+ G A+S +S++E G+ 
Sbjct: 8  MPSLIRLARESGGSAPDPQPLDLGERVRDLRKSRGWTLEQAANQAGLARSTLSKIENGQM 67

Query: 60 TINIDNMIILAHTLDTPLWKLLKP 83
          +   + +  LA  L+  + +L  P
Sbjct: 68 SPTFEALKKLAVGLEISVPQLFTP 91


>gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 170

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|255655753|ref|ZP_05401162.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296451015|ref|ZP_06892760.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296879020|ref|ZP_06903017.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296260146|gb|EFH06996.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296429973|gb|EFH15823.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 181

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK+  L+ +++        S +S++E G +  +++++  +A +L+ PL+   
Sbjct: 6  LGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTFF 65


>gi|148270580|ref|YP_001245040.1| helix-turn-helix domain-containing protein [Thermotoga petrophila
          RKU-1]
 gi|281412888|ref|YP_003346967.1| XRE family transcriptional regulator [Thermotoga naphthophila
          RKU-10]
 gi|147736124|gb|ABQ47464.1| helix-turn-helix domain protein [Thermotoga petrophila RKU-1]
 gi|281373991|gb|ADA67553.1| transcriptional regulator, XRE family [Thermotoga naphthophila
          RKU-10]
          Length = 127

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK   LTQK++  + G +QS +S++ETG+  I+I  +  +   L 
Sbjct: 36 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 87


>gi|326317729|ref|YP_004235401.1| helix-turn-helix domain-containing protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323374565|gb|ADX46834.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 304

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
             +      F ++ R+ R++ +L+Q+++      +   +S +ETG++  + D ++ LA 
Sbjct: 32 PSPVPGTHSPFGDHLRHWRRQRRLSQQDLALEAEVSTRHLSCVETGRAAPSRDMVLRLAE 91

Query: 72 TLDTPLWK 79
           L  PL +
Sbjct: 92 RLSVPLRE 99


>gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 169

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  +S+ E G S  + D +I L+  L+TP+  L
Sbjct: 1  MLSENIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock4-18]
 gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock4-18]
          Length = 107

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
 gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
          Length = 111

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+   ++Q+E+  +TG   ++IS +E G S    + +IIL + L+     + 
Sbjct: 7  GKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVSADAIF 65


>gi|297163316|gb|ADI13028.1| putative transcriptional regulator, XRE family protein
          [Streptomyces bingchenggensis BCW-1]
          Length = 101

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  R+   ++Q+ +    G +Q+ I+++E G ST  ID M      L   L
Sbjct: 27 LKKARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAYITALGGEL 78


>gi|269794649|ref|YP_003314104.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter
          keddieii DSM 10542]
 gi|269096834|gb|ACZ21270.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Sanguibacter
          keddieii DSM 10542]
          Length = 509

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ RK    TQ  + ++ G +QS ++ +E G   +++D +  ++  LD  L  L
Sbjct: 13 IRDARKLHGWTQAHLADKIGTSQSAVNRIEKGGQNLSLDTVRRISEALDAELLTL 67


>gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7]
 gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7]
          Length = 181

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R++RKE  LT K++ N TG + S++S++E   S++ I ++  ++  L  
Sbjct: 6  AQKIRDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSLKKISDALGV 58


>gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM
          1552]
 gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM
          1552]
          Length = 211

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRK   + Q+E+ ++ G     +S++E G +    + +  +   LD    +LL
Sbjct: 11 LGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNELL 70


>gi|315446756|ref|YP_004079635.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|315265059|gb|ADU01801.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
          Length = 83

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 1  MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP R  ++ P         R +     R +R    +TQ+ +  R+G  ++ + ++E G+ 
Sbjct: 1  MPTRPSQNNPERVAQWEHWRRLVGAMIRELRIARNMTQEALALRSGVTRNVLIDVEHGRR 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
           +  + +  +A  LD  + +LL
Sbjct: 61 GLLYERLFDIADALDVNVAELL 82


>gi|312875437|ref|ZP_07735441.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2053A-b]
 gi|315653809|ref|ZP_07906725.1| XRE family transcriptional regulator [Lactobacillus iners ATCC
          55195]
 gi|311089100|gb|EFQ47540.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2053A-b]
 gi|315488505|gb|EFU78151.1| XRE family transcriptional regulator [Lactobacillus iners ATCC
          55195]
          Length = 210

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|309807458|ref|ZP_07701419.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          01V1-a]
 gi|308169278|gb|EFO71335.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          01V1-a]
          Length = 210

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     RN R EA LTQ+E+      +++ +++ E G+   ++ N+ ++A  L   +  
Sbjct: 1  MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 277

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ + ++    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia
          enterocolitica W22703]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+E   +  +   +TG +++ + ++E G+S+  +  +  +A  L+    + L+
Sbjct: 27 GNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQFLE 86


>gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 188

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +N+R+E   +  +   +TG +++ + ++E G+S+  +  +  +A  L+    + L+
Sbjct: 9  GNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQFLE 68


>gi|259415871|ref|ZP_05739791.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
 gi|259347310|gb|EEW59087.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
          Length = 209

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
               +    E +      R +RK+   T +   ++ G A+S +S++E G+ +   + + 
Sbjct: 13 AHANGEQSAPEALDLGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYEALK 72

Query: 68 ILAHTLDTPLWKLLKP 83
           LA  L   + +L  P
Sbjct: 73 KLAVGLQISVPQLFTP 88


>gi|182417693|ref|ZP_02949012.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237667491|ref|ZP_04527475.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182378417|gb|EDT75948.1| DNA-binding protein [Clostridium butyricum 5521]
 gi|237655839|gb|EEP53395.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++  N  +NIR    L+  ++   TG +++ + ++E GKS   +  +  ++  L   
Sbjct: 6  LVIGNKLKNIRNSRNLSLDDVAELTGVSKAMLGQIERGKSNPTVSTLWKISTGLRVS 62


>gi|49081786|gb|AAT50293.1| PA1884 [synthetic construct]
          Length = 184

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +RKE +LT  ++  R   +++ IS +E  +S+     +  LA  L   L +
Sbjct: 5  ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|13475454|ref|NP_107018.1| hypothetical protein mlr6529 [Mesorhizobium loti MAFF303099]
 gi|14026206|dbj|BAB52804.1| mlr6529 [Mesorhizobium loti MAFF303099]
          Length = 514

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +  + E+ IF     R IR    LTQ  +    G + S+++ +E  +  + +  ++ LA 
Sbjct: 30 EKSMAEQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLAS 89

Query: 72 TLDTPLWKL 80
                 +L
Sbjct: 90 VYKVDPHEL 98


>gi|256377557|ref|YP_003101217.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921860|gb|ACU37371.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 737

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74
             + R  R+ A LTQ+++   +G +   IS LE G    + +D + +LA  L 
Sbjct: 5  LGPSLRRARRSAGLTQEQLSAASGISVRTISRLENGADENVRLDTLRLLADALG 58


>gi|254463689|ref|ZP_05077100.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
 gi|206684597|gb|EDZ45079.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
          Length = 189

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R       + R +RK   LT  ++      +  W+S++E   S  +I ++  +A  L  P
Sbjct: 6  RAAATLGADIRALRKARGLTLTDVAAVLNRSVGWLSQVERDMSEPSISDLRQIAEALGVP 65

Query: 77 LWKLL 81
          +  L 
Sbjct: 66 MSMLF 70


>gi|322834304|ref|YP_004214331.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321169505|gb|ADW75204.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +        R+ A L+  E+  R G A+S +S+LE G    +++ +  L   L+ P  +L
Sbjct: 7  VISKGLVRERQRAGLSLAEVARRAGIAKSTLSQLEAGNGNPSLETLWALCVALNIPFARL 66

Query: 81 LKP 83
          ++P
Sbjct: 67 MEP 69


>gi|307244410|ref|ZP_07526521.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
          DSM 17678]
 gi|306492229|gb|EFM64271.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
          DSM 17678]
          Length = 63

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           NN R  R++   TQ E+    G ++ ++S++ET K    I      A  L   + +L 
Sbjct: 2  GNNLRQFREKRGFTQTELSTAVGISRQYLSDIETLKKQPTIKIAFDCARVLKVSIEELF 60


>gi|296105700|ref|YP_003617400.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99
          Alcoy]
 gi|295647601|gb|ADG23448.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99
          Alcoy]
          Length = 81

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+ RKE   +Q++  ++    ++++  +E G+  + I  +I +A  L   +  L+
Sbjct: 12 GKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALILGVEVATLI 70


>gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 315

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE  LTQ+++  + G +   +S  ETG +  ++  ++ LA   D  + +LL
Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTNLPDLSILVELAEYYDVEMRELL 65


>gi|291450131|ref|ZP_06589521.1| transcriptional regulatory protein [Streptomyces albus J1074]
 gi|291353080|gb|EFE79982.1| transcriptional regulatory protein [Streptomyces albus J1074]
          Length = 201

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P R     ++SD  L  R +   N R+ R E   T   +  R+G +++ + ++E  ++ 
Sbjct: 7  LPGR-----NVSDLDLLTRSL-ARNVRHWRAERGFTLDALATRSGVSRNMLIQIEQARTN 60

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +I  ++ +   L   +  LL
Sbjct: 61 PSIATVVKIGDALGVSVTSLL 81


>gi|27764000|emb|CAD60517.1| Cinorf4 protein [Streptomyces cinnamoneus]
          Length = 190

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R+G ++  I ++E  ++  ++   + LA  L   +  
Sbjct: 9  QSLARNLKRWRGERHFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus
          parasanguinis ATCC 903]
 gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus
          parasanguinis ATCC 903]
          Length = 169

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204]
 gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204]
          Length = 180

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R +  LT +E+ +RT   + ++S+LE   ++ +I  +  +A  L   + +  
Sbjct: 5  GHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLTSPSIQTLADIAEALGVDMSRFF 63


>gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus
          ND03]
          Length = 170

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 202

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+  +T   +   TG + S +S LE+G    +++ ++ +A   + PL  L+
Sbjct: 21 VGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGGRRPSLELLLPIARAHEVPLDDLV 80


>gi|239835028|ref|ZP_04683356.1| Protein schB [Ochrobactrum intermedium LMG 3301]
 gi|239823091|gb|EEQ94660.1| Protein schB [Ochrobactrum intermedium LMG 3301]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 1  MPRRKRDE----PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
          MP+  + E      +S+    +        R  R+   LT   +   +G +   +S++E 
Sbjct: 1  MPKVNKAEISRIAPISEPTPNDAGDIGARIRTRRQALGLTLGYLSEVSGLSTGALSQIER 60

Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83
          G  +  +  +  +A  L     +L+ P
Sbjct: 61 GLVSPTVRTLYTIADVLSMSPAQLIDP 87


>gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 227

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%)

Query: 12  SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           + A+   +       R  RKE  LT +++   +G A S IS+ E G+  ++ + +++L +
Sbjct: 36  AAAMPAGKHEVGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQIALSYEKVLMLGN 95

Query: 72  TLDTPLWKLL 81
            LD  + +L 
Sbjct: 96  ALDIDMTRLF 105


>gi|323140941|ref|ZP_08075854.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322414679|gb|EFY05485.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 72

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N    R+   +TQ E+  +   +++ +S++E GK   N++++ +LA  L     +
Sbjct: 7  KTIGLNIMYYRRALSMTQSELAEKAQMSRARVSDIECGKGPFNMESIFLLAQALGVDPVR 66

Query: 80 LLK 82
          LL+
Sbjct: 67 LLQ 69


>gi|317498013|ref|ZP_07956317.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316894689|gb|EFV16867.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 136

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N + IRK    TQ+E+  +    +  IS+ E G S  + D +  LA  L+  + +L
Sbjct: 1  MFNENLKIIRKAKGYTQEELAIKIHVVRQTISKWEKGLSVPDADTLSKLADVLEIKVSEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225028162|ref|ZP_03717354.1| hypothetical protein EUBHAL_02434 [Eubacterium hallii DSM 3353]
 gi|224954474|gb|EEG35683.1| hypothetical protein EUBHAL_02434 [Eubacterium hallii DSM 3353]
          Length = 187

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IR    ++  E+  +TG ++S ++++E G +  ++  +  +   L      L+
Sbjct: 8  VAVNLKQIRLSKGMSLGEVAEQTGVSKSMLAQIEKGTANPSLGVLGKITSGLRIEFQTLI 67

Query: 82 KP 83
           P
Sbjct: 68 DP 69


>gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E
          str. JGS1987]
 gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E
          str. JGS1987]
          Length = 263

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  RK   L+Q E+ +++G +++ IS  E  K   NI  +  +A  L   +  L+
Sbjct: 3  VGDRIKYFRKAENLSQDELASKSGLSRNAISNYELNKRQPNIVVLKKIADALKVDIDDLI 62


>gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein
          [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 149

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12]
 gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12]
 gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12]
          Length = 198

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    + +R+   L+Q+E+ ++    ++ I   E G+  + ++ +  +   L++   +  
Sbjct: 4  YGKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFNEFF 63


>gi|237750719|ref|ZP_04581199.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373809|gb|EEO24200.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 243

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+E  LTQ ++   +G +++ +   E  K  I +DN+  +A+ LD  +   L
Sbjct: 3  LGLKIKTAREEKGLTQNDLVKISGVSRASLQLYEADKGNITLDNLEKIANALDYEVVHFL 62


>gi|227872217|ref|ZP_03990579.1| XRE family transcriptional regulator [Oribacterium sinus F0268]
 gi|227841940|gb|EEJ52208.1| XRE family transcriptional regulator [Oribacterium sinus F0268]
          Length = 99

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +A+  E  I +    + RK++ +TQKE+   TG AQ  IS+LE G +  +I  +  LA  
Sbjct: 23 EALQPE-HIVIQAMIDARKKSGMTQKELAEITGIAQGDISKLERGSANPSIRTLQRLAKG 81

Query: 73 LDTPLWKLLKP 83
          +   L     P
Sbjct: 82 MGMILKIEFTP 92


>gi|262201424|ref|YP_003272632.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262084771|gb|ACY20739.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   + +  R  A L+  E+  R G  +S +S+LE+G    +++ +  L+  L     
Sbjct: 5  KALVAASLKRERTRAGLSIGELARRAGIGKSTLSQLESGDGNPSVETLWALSTALGVQFS 64

Query: 79 KLL 81
           LL
Sbjct: 65 ALL 67


>gi|254488763|ref|ZP_05101968.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101]
 gi|214045632|gb|EEB86270.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101]
          Length = 207

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T ++  N+ G A+S +S++E G+ +   D +  LA  L+  + +L 
Sbjct: 27 LGARVRELRKARSWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLAVGLEISVPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|167461940|ref|ZP_02327029.1| Immunity repressor protein, phage-related protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 81

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
          M F +  R++RK    T +E+ +R+G + ++IS+LE G     + + ++ L+  L+    
Sbjct: 18 MYFYDKLRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRGIPSPEVLMKLSEGLNISYE 77

Query: 79 KLLK 82
          +L++
Sbjct: 78 ELME 81


>gi|116510849|ref|YP_808065.1| XRE family transcriptional regulator [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116106503|gb|ABJ71643.1| Transcriptional regulator, xre family [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 185

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   N +  R    LTQ+E+     F++  IS  E+ K+  N++ +I LA   D+ L
Sbjct: 1  MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNLETLIALAELYDSDL 57


>gi|94968170|ref|YP_590218.1| XRE family transcriptional regulator [Candidatus Koribacter
          versatilis Ellin345]
 gi|94550220|gb|ABF40144.1| transcriptional regulator, XRE family [Candidatus Koribacter
          versatilis Ellin345]
          Length = 74

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   TQ ++       +  IS++E GK    +  + I+A  LDT + +LL
Sbjct: 12 VGKRIRALRIQKGWTQTDMAVYLDINRGHISDIERGKREAGLITLQIIARGLDTTMARLL 71

Query: 82 K 82
          K
Sbjct: 72 K 72


>gi|116049838|ref|YP_791355.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|115585059|gb|ABJ11074.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +RKE +LT  ++  R   +++ IS +E  +S+     +  LA  L   L +
Sbjct: 5  ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|319780300|ref|YP_004139776.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166188|gb|ADV09726.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 193

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+ R+   L+ +E+  R G  + ++S++E  ++T ++  +  L   L   +  + 
Sbjct: 11 GVKLRHARQVLGLSLEELGARIGLTEGYLSKIENDRATPSMAALHRLVQALGINMNAMF 69


>gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1087]
 gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 170

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|302525493|ref|ZP_07277835.1| predicted protein [Streptomyces sp. AA4]
 gi|302434388|gb|EFL06204.1| predicted protein [Streptomyces sp. AA4]
          Length = 442

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTP 76
           +++         R+   L+Q  + +  G  + W+S++E G+  I  +D +  +A  L   
Sbjct: 36  DQLSIGERIAFYRRRRGLSQAVLADLVGRTEDWLSKIERGERDIRRLDVLAEVAQALRVT 95

Query: 77  LWKLL 81
           L  LL
Sbjct: 96  LGDLL 100


>gi|291166792|gb|EFE28838.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC
          35896]
          Length = 172

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R   +LTQ+E+  R    + +IS++E   ++ +I  ++ +   L T L
Sbjct: 4  GEKIKRLRILNQLTQEELALRCDLTKGFISKVERNLTSPSISTLMDILEVLGTDL 58


>gi|260426660|ref|ZP_05780639.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260421152|gb|EEX14403.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 215

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + E +      R +RKE   T ++   + G A+S +S++E G+ +   D +  LA  L 
Sbjct: 28 AMAEPLDLGARVRELRKERDWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAVGLG 87

Query: 75 TPLWKLLKP 83
            + +L  P
Sbjct: 88 IGVPQLFTP 96


>gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176]
 gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176]
          Length = 82

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           L+  I   RM      +  R E  +TQ  +    G ++  I+ +E G+    I+    +
Sbjct: 8  QLASEIKEARMAKNLKLKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINLCKSI 67

Query: 70 AHTLDTPLWKLL 81
             LD  L  L 
Sbjct: 68 CKALDKTLDDLF 79


>gi|312144436|ref|YP_003995882.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp.
          'sapolanicus']
 gi|311905087|gb|ADQ15528.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp.
          'sapolanicus']
          Length = 178

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     RN RK   ++  ++  +     S++S++E G +  +I  +  +A  L+ P++  
Sbjct: 1  MLGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYF 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|313106352|ref|ZP_07792591.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|310879093|gb|EFQ37687.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M +       L +   R  ++     N R +R +A L+Q+ +      ++  +  +E+G 
Sbjct: 1  MRKTATVSNILPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGD 60

Query: 59 STINIDNMIILAHTLDTPLWKLLK 82
            +++  +  +A  L      L++
Sbjct: 61 VNVSLSTLDRIAAALGVLFPDLVQ 84


>gi|260886811|ref|ZP_05898074.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330839382|ref|YP_004413962.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260863410|gb|EEX77910.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329747146|gb|AEC00503.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 82

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAH 71
          D   RE  I        RK   L+Q+E     G ++S++S++E G    I+   ++ +A 
Sbjct: 8  DGFQREFRILGQRIAYYRKLQGLSQEEFSKDVGISKSYLSKIERGDIQGISFVTVMEIAR 67

Query: 72 TLDTPLWKLL 81
          +L+  + KLL
Sbjct: 68 SLEAKVTKLL 77


>gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 187

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R  A+++   +   +G + S +S +E G  + +++ +  +A  L  P+ +  
Sbjct: 7  GAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVPVSRFF 65


>gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
 gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
          Length = 99

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           N  RN R    L++KE+ +    +Q  IS  E G ST++I+N++IL + L+ P  +
Sbjct: 8  GNFIRNARVSKGLSEKELASLISVSQQQISRYERGISTLSIENILILLNALNIPFDE 64


>gi|167912242|ref|ZP_02499333.1| DNA-binding protein [Burkholderia pseudomallei 112]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|126737596|ref|ZP_01753326.1| transcriptional regulator, XRE family with cupin sensor domain
          [Roseobacter sp. SK209-2-6]
 gi|126720989|gb|EBA17693.1| transcriptional regulator, XRE family with cupin sensor domain
          [Roseobacter sp. SK209-2-6]
          Length = 199

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               +     +  R  A LT  E+  +   + + IS++E G+ + ++ ++  LA     
Sbjct: 12 PPLDHLIGAAVKAHRVLAGLTLAELSAKAKVSPAMISKIERGQVSASLSSLEALAQATGV 71

Query: 76 PLWKLL 81
          PL    
Sbjct: 72 PLINFF 77


>gi|126438464|ref|YP_001060149.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126217957|gb|ABN81463.1| DNA-binding protein [Burkholderia pseudomallei 668]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|317125042|ref|YP_004099154.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Intrasporangium calvum DSM 43043]
 gi|315589130|gb|ADU48427.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Intrasporangium calvum DSM 43043]
          Length = 509

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R+ R+   +TQ E+    G +Q  ++ +E GK  +++D +  +   LD+ 
Sbjct: 13 IRDARRHKAMTQAELAELLGTSQGAVTRIEAGKQNLSLDMLAKIGDALDSE 63


>gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R+  +LT   +  R    + ++S++E G ++ ++ +++ L   LD P+ +
Sbjct: 4  EQIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLTSPSVGSLLRLCEVLDLPVGE 63

Query: 80 LL 81
          L 
Sbjct: 64 LF 65


>gi|121607191|ref|YP_994998.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121551831|gb|ABM55980.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae
           EF01-2]
          Length = 229

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R  R+   L  +++    G + S +S+LE G  +I++  +  LA  L  P+  L+
Sbjct: 46  LGEQLRRRRQALGLPLQQVARACGISVSLLSQLERGLRSISMRTLGALAQELRLPIETLV 105

Query: 82  K 82
           +
Sbjct: 106 R 106


>gi|284043477|ref|YP_003393817.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947698|gb|ADB50442.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 93

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRR +        +  E +      R +R    LTQ+ +   +   ++++  +E G+  
Sbjct: 1  MPRRTKPAR---PPLGPEYVTLGGAVREVRARRSLTQEGLGRESALHRNYVGAIERGEIN 57

Query: 61 INIDNMIILAHTLDTPLWKLL 81
               +  LA  L  PL +L+
Sbjct: 58 PTFRILRKLATGLHLPLSELV 78


>gi|261342972|ref|ZP_05970830.1| hypothetical protein ENTCAN_09574 [Enterobacter cancerogenus ATCC
          35316]
 gi|288314723|gb|EFC53661.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterobacter cancerogenus ATCC 35316]
          Length = 182

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   +    R     +  EI  R G A+S +S+LE+G    +++ +  L   LD P  +L
Sbjct: 7  VIAKSLVRERLRTGHSLAEIARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFARL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|114769447|ref|ZP_01447073.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255]
 gi|114550364|gb|EAU53245.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 16 LRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           RE+++        ++ R++  +T  ++   TG +   +S++E G ++ +++ +  LA  
Sbjct: 13 PREKVLELAIGREVKSHRRQRSMTVADLAASTGLSIGMLSKIENGNTSASLNTLQTLADA 72

Query: 73 LDTPLWKLLK 82
          L  P+  L +
Sbjct: 73 LMIPITSLFR 82


>gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 200

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 14 LVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTTLDQL 73

Query: 81 LK 82
          ++
Sbjct: 74 VE 75


>gi|332653437|ref|ZP_08419182.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332518583|gb|EGJ48186.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 193

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R  R+  KLT       TG ++S ++++E G+    I  +  +A+        L
Sbjct: 18 LVAKNARQAREAKKLTLDGAAAATGVSRSMLAQIEKGEVNPTISVLWKIANGYKVSFTSL 77

Query: 81 LK 82
          ++
Sbjct: 78 VE 79


>gi|309798658|ref|ZP_07692925.1| transcription regulator [Streptococcus infantis SK1302]
 gi|308117704|gb|EFO55113.1| transcription regulator [Streptococcus infantis SK1302]
          Length = 102

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R   KLTQ+E+  ++  +  +I+ +E  +  +++D ++ +   +D       +
Sbjct: 4  GELVREYRLSKKLTQQELAEKSDLSLPFINLIENNRRNLSVDTLLKILSAMDINPSDFFR 63

Query: 83 P 83
          P
Sbjct: 64 P 64


>gi|325678958|ref|ZP_08158556.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109462|gb|EGC03680.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 181

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R    E  LTQ E+  RTG ++S+IS+  +GK     D +  LA  L T    LL
Sbjct: 4  FAENLRAAMAERSLTQAELSKRTGISKSFISQYLSGKFKPRDDKLSALAQALGTTKGALL 63


>gi|126452632|ref|YP_001067412.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|242317409|ref|ZP_04816425.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|126226274|gb|ABN89814.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|242140648|gb|EES27050.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
 gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family
           [Streptococcus sp. M334]
          Length = 151

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    + +R +   +Q+E+  + G  Q+  S+ E GKS  N + +  +A      L  L 
Sbjct: 89  FSVRLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSKPNYEKLEKIADFFGVSLDWLF 148



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N+RK+  L Q+E+       +   ++ E GKS  N + + +LA   D  +  LL
Sbjct: 4  FHEKLKNLRKKRGLIQQEVAELLNVERVAYTKWENGKSKPNYEKLSMLACIFDVSIDYLL 63


>gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 176

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  +TQ+++  + G  +  +S  ETG +  ++D +I L+      L K+L
Sbjct: 7  GKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSNMPDLDVLIELSDFYAVDLRKIL 65


>gi|153954623|ref|YP_001395388.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855101|ref|YP_002472223.1| hypothetical protein CKR_1758 [Clostridium kluyveri NBRC 12016]
 gi|146347481|gb|EDK34017.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219568825|dbj|BAH06809.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 171

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +     +  R+E  +TQ+E+   +  +   IS +ETG+  +  DN+ I+   LD P
Sbjct: 1  MIGTAIKEAREEKGMTQQELGQMSFLSDKTISAIETGRRNLTKDNLRIICKELDNP 56


>gi|120436979|ref|YP_862665.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
 gi|117579129|emb|CAL67598.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
          Length = 252

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N R IR    L+Q+         +  +   E G+S   I+ +I +A+    P+  +
Sbjct: 3  LFGKNIRKIRSVKSLSQQSFAEIFDLKRGTLGAYEEGRSEPKIETIIKIANHFSIPIGDI 62

Query: 81 LK 82
          L 
Sbjct: 63 LT 64


>gi|325300213|ref|YP_004260130.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319766|gb|ADY37657.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 101

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
               ER  F              + RK+ K+TQ E+  + G  +S+IS +E G     I
Sbjct: 21 KPGTPEREEFRKEAYAYCMGQIICDARKKEKMTQSELAEKIGTNKSYISRIEKGIVDPGI 80

Query: 64 DNMIILAHTLDTPLWKLLKP 83
               +   L   + +++KP
Sbjct: 81 STFCRIIDALGLKI-EIVKP 99


>gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
          Length = 169

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|309811507|ref|ZP_07705289.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
 gi|308434558|gb|EFP58408.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
          Length = 512

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%)

Query: 12  SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            +    + +      R++R+ A+ T  ++    G + S +S +E GK    +  +  LA 
Sbjct: 33  PERAAPDALTIGRRLRHVRQGAERTLGDVAAAVGMSPSALSLIENGKREPRLSVLTSLAE 92

Query: 72  TLDTPLWKLL 81
            LD PL  LL
Sbjct: 93  VLDVPLADLL 102


>gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes SK187]
 gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes SK187]
          Length = 508

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R+ RK+  +TQ ++      +QS I  +E+G   ++++ +  +A  L++P+
Sbjct: 9  VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64


>gi|160946034|ref|ZP_02093260.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443765|gb|EDP20770.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium
          prausnitzii M21/2]
          Length = 95

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N    +R  AKL+Q+++  + G +   + +LE G S  ++  +I +A      +  LL
Sbjct: 9  GNRIFTLRTNAKLSQEKLAEKLGVSHRHLGDLERGSSNGSVKILIDIAEYFHVSMDYLL 67


>gi|160914340|ref|ZP_02076559.1| hypothetical protein EUBDOL_00348 [Eubacterium dolichum DSM 3991]
 gi|158433813|gb|EDP12102.1| hypothetical protein EUBDOL_00348 [Eubacterium dolichum DSM 3991]
          Length = 105

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R E  + + E+  +      ++ ++ETGK  + I  +  +A  L   + +L+
Sbjct: 38 LGIRIAKLRSEKNMARAELARQCDLHVQYLFDVETGKRNMTIYVLCKIARALGISVSELV 97

Query: 82 K 82
          K
Sbjct: 98 K 98


>gi|154504728|ref|ZP_02041466.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC
          29149]
 gi|153794902|gb|EDN77322.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC
          29149]
          Length = 117

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R +  +TQ+E+  +   A S IS LE G  + ++  +I + + L+  +  LL
Sbjct: 12 LGERLKEARIKKHMTQEELSEKIDSATSSISHLENGTHSPSLKTLIKICNVLEIGIDALL 71


>gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM
          12444]
 gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM
          12444]
          Length = 227

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++     +RK   LTQ ++  R G  Q  I   E G+     + +  LA  L      LL
Sbjct: 17 YLERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQREPKFEQLFRLAEILGVDASALL 76


>gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 101

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   N  + +R++  LTQ  +   +G +QS ISE+E+G        ++ +   +   L +
Sbjct: 1  MTLGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESGDKEPTTGTLMKICSAMGLTLAE 60

Query: 80 LLK 82
             
Sbjct: 61 FFT 63


>gi|15644083|ref|NP_229132.1| LacI family transcriptional regulator [Thermotoga maritima MSB8]
 gi|4981889|gb|AAD36402.1|AE001787_7 lacI family transcriptional regulator, putative [Thermotoga
          maritima MSB8]
          Length = 111

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK   LTQK++  + G +QS +S++ETG+  I+I  +  +   L 
Sbjct: 20 GGQLLAYRKMHNLTQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALG 71


>gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens
          DSM 2228]
          Length = 375

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +NIR +  L+QK++    G+A++ IS  E      ++  +  +A   +  +  LL
Sbjct: 4  FYKRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNIRIPSLQTITEIADYFNVSVDYLL 63


>gi|295115097|emb|CBL35944.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SM4/1]
          Length = 107

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   LTQ+ +    G A S++SE+E  ++  + + +  L  TL+  L  L+
Sbjct: 8  LGYRLKAARENRHLTQERLAEMVGIAASYLSEIENKRTVPSFNVLSSLCQTLNVSLDDLI 67


>gi|238798765|ref|ZP_04642236.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC
          43969]
 gi|238717397|gb|EEQ09242.1| Predicted transcriptional regulator [Yersinia mollaretii ATCC
          43969]
          Length = 279

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  NN + +R +  +TQ+E+    G +Q  I  +ETGK    ++    +   L  PL
Sbjct: 16 MVQNNIKQLRIQLSITQRELAAAVGTSQQQIQRIETGKVAARLEVAQAICSVLKKPL 72


>gi|183598410|ref|ZP_02959903.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC
          25827]
 gi|188020589|gb|EDU58629.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC
          25827]
          Length = 104

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L  + I  +N    R+   L+  E+ +    +Q  +S +E G   ++++ +  +A++LD 
Sbjct: 5  LSPKEIVGSNIHKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQIANSLDI 64

Query: 76 PLWKLL 81
           +  LL
Sbjct: 65 DINCLL 70


>gi|153008229|ref|YP_001369444.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151560117|gb|ABS13615.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
           49188]
          Length = 110

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             RMI   N  +  R    ++ K + +  G + +++S++E G    ++D M  +A  L  
Sbjct: 45  VNRMIDGENKIKVWRDYRGMSAKALADAAGISAAYLSQIEKGLREGSLDAMKKIAEALKV 104

Query: 76  PLWKL 80
            + +L
Sbjct: 105 TIDEL 109


>gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  E+  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 24 LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 83


>gi|27379415|ref|NP_770944.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27352566|dbj|BAC49569.1| blr4304 [Bradyrhizobium japonicum USDA 110]
          Length = 226

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   LT K++  RTG A S +S++E G  ++  D ++ L   L   + +L 
Sbjct: 14 LGQCLKAARQARGLTLKQVAERTGMALSTLSKVENGLMSLTYDKLLQLTSGLKMEIAELF 73

Query: 82 KP 83
           P
Sbjct: 74 NP 75


>gi|322377114|ref|ZP_08051606.1| DNA-binding protein [Streptococcus sp. M334]
 gi|321281827|gb|EFX58835.1| DNA-binding protein [Streptococcus sp. M334]
          Length = 106

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 35/67 (52%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++   +  ++ R + KLTQ+E+  R+  +  +++ +E  K  ++++ ++ +   L+  
Sbjct: 3  VKKLSIGSQIKSYRIKLKLTQQELAERSELSLPFMNLVENDKRNLSVETLLKILDGLEIS 62

Query: 77 LWKLLKP 83
            +   P
Sbjct: 63 PSEFFLP 69


>gi|304385449|ref|ZP_07367794.1| transcriptional regulator [Pediococcus acidilactici DSM 20284]
 gi|304328656|gb|EFL95877.1| transcriptional regulator [Pediococcus acidilactici DSM 20284]
          Length = 114

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
              + +RKE+ LTQ+E+  ++  + ++IS +E   +  I+  N+  +A  L     +LL
Sbjct: 8  GKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQNISWKNIEAIAEALGLSTIELL 67

Query: 82 K 82
          +
Sbjct: 68 Q 68


>gi|317129456|ref|YP_004095738.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315474404|gb|ADU31007.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 239

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76
          E   F    +++R E  LT +E+  R+G + S+IS++E+G+    + D +  LA  L   
Sbjct: 2  EPKEFGLYLKSLRIEKNLTMRELDKRSGVSHSYISKMESGQKGIPSPDILRKLAEPLSVR 61

Query: 77 LWKLL 81
            KL+
Sbjct: 62 YQKLM 66


>gi|295675501|ref|YP_003604025.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
 gi|295435344|gb|ADG14514.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 157

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N R  R E  ++Q+E+ +  G  ++ IS LE       ++    LA  LD  + 
Sbjct: 11 RERFARNLRAYRIELGMSQEELGSYIGADRTAISRLERTFGNPTLERAEALASALDIDVR 70

Query: 79 KLLK 82
           L+ 
Sbjct: 71 VLMT 74



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTI-NIDNMIILAHTLDTPLW 78
                  +R++  LTQK++    G  +++IS +E   G+ T   +  +  LA        
Sbjct: 95  VGAKVATLREKMGLTQKQLGELAGVDRNFISRVEAPHGRGTPLELATLEKLAEAFGIHPV 154

Query: 79  KLL 81
           +LL
Sbjct: 155 ELL 157


>gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC
          13950]
          Length = 174

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +RK+  LT + +  +TG  +S++S++E  +ST +I   + +A  LD  + +L 
Sbjct: 5  LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLF 60


>gi|228982712|ref|ZP_04142971.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis
          Bt407]
 gi|228776895|gb|EEM25203.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis
          Bt407]
          Length = 133

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R  RK + LTQ+E+  +    ++ IS  ETG ST +I+ + +L   L+     L
Sbjct: 28 VFKKRLRLARKWSGLTQEELAIKVNTKKTTISNYETGYSTPSIEMLDLLCDVLNVSSDFL 87

Query: 81 L 81
          L
Sbjct: 88 L 88


>gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 234

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK+  LTQ E+   +G  Q+ +S++E  +  ++I+    LA  L   +  L+
Sbjct: 4  GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLSIETWESLASVLGCSVGYLV 62


>gi|255306540|ref|ZP_05350711.1| XRE family transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 73

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +R E  L QK++  + G   S+   +E+G    ++   I L+      + K+ 
Sbjct: 2  NNLKELRTERNLKQKDVALKVGITTSYYGMIESGTRVPSLAIAIKLSKCFGVSIEKIF 59


>gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402]
 gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402]
          Length = 384

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ RK+  L+Q+++ +R   ++  +S+ E+  +  NID ++ +A  L+  L +
Sbjct: 1  MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|160939146|ref|ZP_02086497.1| hypothetical protein CLOBOL_04040 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438109|gb|EDP15869.1| hypothetical protein CLOBOL_04040 [Clostridium bolteae ATCC
          BAA-613]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+E+    G  +  I  +E GK    ++  + +   L   L +L 
Sbjct: 7  KMKAARAGMDLSQEELAELVGVTRQTIGMIEAGKYNPTLNLCLAICKALHKTLDELF 63


>gi|153932210|ref|YP_001385236.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152928254|gb|ABS33754.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
          Length = 92

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  + +R+E +LTQ+E+      ++  IS  E+ ++  +I+N+I LA+  +  L  L
Sbjct: 1  MFGDRLKELREEKQLTQEELGKFLNVSRQAISSYESEETEPSINNLIKLANIFNISLDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|15597081|ref|NP_250575.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107101318|ref|ZP_01365236.1| hypothetical protein PaerPA_01002352 [Pseudomonas aeruginosa
          PACS2]
 gi|254240277|ref|ZP_04933599.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192]
 gi|9947875|gb|AAG05273.1|AE004614_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126193655|gb|EAZ57718.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +RKE +LT  ++  R   +++ IS +E  +S+     +  LA  L   L +
Sbjct: 5  ELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVALSE 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|330982062|gb|EGH80165.1| conjugal transfer protein TrbA [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 159

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N   I  E  +T+ ++   T  + S ISE+  GK    +  M  +A  L TPL  L
Sbjct: 5  IFFTNVLRILGERGMTKHDLAKLTHVSISVISEITNGKGNPTLKTMTAIAEALQTPLPTL 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 143

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R +   TQKE+   +G ++S I   E G    + + +  +A++L    + 
Sbjct: 1  MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60

Query: 80 LLKP 83
          +  P
Sbjct: 61 MSDP 64


>gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 196

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 11 LSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          + DA   +R++       R +R++   T  ++   TG + S +S LE G+   N++ ++ 
Sbjct: 1  MDDADDMDRILDAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLP 60

Query: 69 LAHTLDTPLWKLL 81
          LA     PL +L+
Sbjct: 61 LARAYGVPLDELV 73


>gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
 gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
          Length = 212

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R E   + + +    G + S +S++ETGKS  ++  +  +   L   +  L 
Sbjct: 9  VGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVESLF 68


>gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC
          33386]
 gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC
          33386]
          Length = 180

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +++R+E  LTQ E+ +R   ++ +IS+LE   ++ ++  +  +   L T +    
Sbjct: 4  GEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLTSPSLSTLEDILEVLGTNIRDFF 62


>gi|226324530|ref|ZP_03800048.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758]
 gi|225206978|gb|EEG89332.1| hypothetical protein COPCOM_02314 [Coprococcus comes ATCC 27758]
          Length = 121

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R +A LTQ  +  +    ++ IS +E G    +   M+  +  LD     L+
Sbjct: 11 FGTRVRQARHKAGLTQAALAEKLNLDETTISRIENGSQATSFATMLNFSEALDVKFDYLI 70


>gi|229816663|ref|ZP_04446952.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM
          13280]
 gi|229807791|gb|EEP43604.1| hypothetical protein COLINT_03712 [Collinsella intestinalis DSM
          13280]
          Length = 90

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H   A   ER +   +    R  A LTQKE+ +R G   + +  LE G    ++  +  +
Sbjct: 19 HEWSAQETEREVM-KSIVKARIAAGLTQKELADRCGMKAANLCRLENGNGNPSVATLSKI 77

Query: 70 AHTLDTPL 77
          AH L   L
Sbjct: 78 AHGLGKKL 85


>gi|169346786|ref|ZP_02865737.1| transcriptional regulator [Clostridium perfringens C str.
          JGS1495]
 gi|169297068|gb|EDS79190.1| transcriptional regulator [Clostridium perfringens C str.
          JGS1495]
          Length = 148

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 22 FVNNFRNIRKE------AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               + +R +       K TQ ++    G ++S++ ++E+G++  + + ++ L+  L  
Sbjct: 5  LGLKIKQLRSDYSLKTGKKCTQADLAKMIGISRSYLGDIESGRTNPSDEILLKLSDALGV 64

Query: 76 PLWKLLK 82
           L  L++
Sbjct: 65 DLDILIE 71


>gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya]
          Length = 185

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   L+  E+   +G +++ +S LE+G+    I+ +  +A  L  PL  LL
Sbjct: 11 VGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPLGDLL 70


>gi|18309240|ref|NP_561174.1| transcriptional regulator [Clostridium perfringens str. 13]
 gi|168206624|ref|ZP_02632629.1| conserved domain protein [Clostridium perfringens E str. JGS1987]
 gi|169343140|ref|ZP_02864165.1| conserved domain protein [Clostridium perfringens C str. JGS1495]
 gi|18143916|dbj|BAB79964.1| probable transcriptional regulator [Clostridium perfringens str.
          13]
 gi|169298778|gb|EDS80853.1| conserved domain protein [Clostridium perfringens C str. JGS1495]
 gi|170661993|gb|EDT14676.1| conserved domain protein [Clostridium perfringens E str. JGS1987]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++ +I  N  +  R E  L+Q+ + +  G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKDELILKNKLKISRVEKGLSQQALADLVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 226

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ AK++ +++  + G +  ++S++E G    + + +  LA  L   
Sbjct: 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRRPSAEVLQQLASALRVS 64


>gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 94

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E  LTQK++ +R G A S IS  E+       D +I  A         LL
Sbjct: 3  LGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDTRCPTFDTLIKYARIFHVSTDYLL 62


>gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC
          43243]
          Length = 167

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R    +  +  RK   +TQ E+  ++G   S I + E+G+     D +  +A  L   
Sbjct: 4  RHSIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGIS 61


>gi|170697588|ref|ZP_02888677.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170137475|gb|EDT05714.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 80

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
               H  D +L       +  R IRKE  ++Q+++        S++  +E G + + + 
Sbjct: 2  PNLSSHRQDPVLVA---LGHAIRRIRKERDMSQEQLALSAEVDMSYLGRVERGDNNVAVL 58

Query: 65 NMIILAHTLDTPLWKLL 81
           +  +A  L   + +L+
Sbjct: 59 RLKRIADALGMTMTELM 75


>gi|167720910|ref|ZP_02404146.1| DNA-binding protein [Burkholderia pseudomallei DM98]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|187927559|ref|YP_001898046.1| XRE family transcriptional regulator [Ralstonia pickettii 12J]
 gi|187724449|gb|ACD25614.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J]
          Length = 81

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RK   L+Q+ + +     +S + ++E G+  + + N++ +A  L     +L
Sbjct: 16 LIGAAVRARRKAIPLSQEALADLAEIDRSHMGKIERGERNVTMLNVLRIAQALGCQPSEL 75

Query: 81 L 81
          L
Sbjct: 76 L 76


>gi|159036303|ref|YP_001535556.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157915138|gb|ABV96565.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 191

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R +R     T +E+    G +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRVIGGVLRRLRVRQGRTLREVAAAAGVSMPYLSEVERGRKEASSEVLAAICRALGIRLS 64

Query: 79 KLL 81
           LL
Sbjct: 65 DLL 67


>gi|170728343|ref|YP_001762369.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169813690|gb|ACA88274.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 68

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RKE  ++Q ++       +S+   +E G+  I ++    LA  L   + +LL
Sbjct: 8  FGLKLREKRKELGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCEVRELL 67


>gi|323140527|ref|ZP_08075454.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322414979|gb|EFY05771.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 71

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R   +L Q  +  + G    ++S++E G +  ++D +  +A  L   +  LL+
Sbjct: 10 GRKIRYYRIMQELGQGMLAEQIGITPQYLSKIEHGSARPSMDLVFRIADKLQVKVSHLLE 69


>gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 170

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|257791668|ref|YP_003182274.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317487866|ref|ZP_07946458.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA]
 gi|325830662|ref|ZP_08164083.1| putative restriction-modification system control element Bcll
          [Eggerthella sp. HGA1]
 gi|257475565|gb|ACV55885.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316912992|gb|EFV34509.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA]
 gi|325487408|gb|EGC89850.1| putative restriction-modification system control element Bcll
          [Eggerthella sp. HGA1]
          Length = 78

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +++R    ++Q+   N+ G  +++++ +E G+  + + N+  +A+  D  L +  
Sbjct: 9  VGLRIKDLRAVHDVSQERFANKIGMDRTYLASIEVGQRNVTLQNLAKIANGFDMTLSEFF 68

Query: 82 K 82
          +
Sbjct: 69 E 69


>gi|161353810|ref|YP_001568987.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
 gi|91718802|gb|ABE57126.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
          Length = 115

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          IF       R    ++Q ++       Q  IS +E G S + +D    L   L+    +
Sbjct: 30 IFGQLILEKRMSKGISQDDLALMANTTQKTISRVEGGNSNVTMDTYDKLFDALNISPEE 88


>gi|53725534|ref|YP_103601.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|67643873|ref|ZP_00442616.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|76811218|ref|YP_334564.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|121600358|ref|YP_992235.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|126450800|ref|YP_001081418.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|134280073|ref|ZP_01766784.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|167000869|ref|ZP_02266674.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|167739889|ref|ZP_02412663.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167847008|ref|ZP_02472516.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|167895592|ref|ZP_02482994.1| DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|254175429|ref|ZP_04882089.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254191730|ref|ZP_04898233.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254196114|ref|ZP_04902539.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254202294|ref|ZP_04908657.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254207627|ref|ZP_04913977.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254259704|ref|ZP_04950758.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
 gi|254356472|ref|ZP_04972748.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|52428957|gb|AAU49550.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|76580671|gb|ABA50146.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|121229168|gb|ABM51686.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|126243670|gb|ABO06763.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|134248080|gb|EBA48163.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|147746541|gb|EDK53618.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147751521|gb|EDK58588.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|148025469|gb|EDK83623.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|157939401|gb|EDO95071.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160696473|gb|EDP86443.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|169652858|gb|EDS85551.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|238525329|gb|EEP88757.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243063295|gb|EES45481.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|254218393|gb|EET07777.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|319892577|ref|YP_004149452.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius
          HKU10-03]
 gi|317162273|gb|ADV05816.1| hypothetical protein SPSINT_1288 [Staphylococcus pseudintermedius
          HKU10-03]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N R  RK  KLTQ E+ +R   ++  ISE+E  K  ++I  +  +A  L    +
Sbjct: 3  KKKIALNIRAYRKMCKLTQSELASRLKTSRQHISEIECCKRGLSIKMLEKMAKKLQVEPY 62

Query: 79 KLLK 82
          +LLK
Sbjct: 63 QLLK 66


>gi|312141280|ref|YP_004008616.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325673887|ref|ZP_08153577.1| XRE family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|311890619|emb|CBH49937.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325555152|gb|EGD24824.1| XRE family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 215

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 1  MPRRKRDEPHL----------SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW 50
          M   KR   H              +  ER+I     R +R  + L+  ++  + G +++ 
Sbjct: 1  MSPSKRPVHHDTAQREVPADTPTGVDLERVI-ATQVRKLRLASGLSVGDMAAKVGISKAM 59

Query: 51 ISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +S++E  +++ ++  +  LA  LD P+  L +
Sbjct: 60 LSKIENAQTSCSLSTLARLAAGLDVPVTSLFR 91


>gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
 gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
          Length = 190

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+++ ++Q+ +  +TG   S IS +E+GK   ++  +  +   +   L +  
Sbjct: 13 LGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGVPISLSEFF 72


>gi|167825520|ref|ZP_02456991.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|217421247|ref|ZP_03452752.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|226193747|ref|ZP_03789349.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|217396659|gb|EEC36676.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|225934052|gb|EEH30037.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC
          27759]
 gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC
          27759]
          Length = 112

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + IRK  KLTQ+++  + G +  ++ E+E G+ T+++  +  +A  L T    +L
Sbjct: 7  GKRIKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGTSTDYIL 65


>gi|197119042|ref|YP_002139469.1| XRE family helix-turn-helix transcriptional response regulator
          [Geobacter bemidjiensis Bem]
 gi|197088402|gb|ACH39673.1| helix-turn-helix transcriptional response regulator, XRE family
          [Geobacter bemidjiensis Bem]
          Length = 233

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R +R+E  L+Q+++   +   + +IS LE GK   ++ ++  LA  L++    
Sbjct: 5  EAFGIVIRRLRRERNLSQEKLSTASCLDRKFISNLEGGKQQPSLVSVFALAGALNSTASS 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|190015098|ref|YP_001966668.1| putative transcriptional regulator, helix-turn-helix domain
          containing protein [Bacillus cereus]
 gi|190015364|ref|YP_001966993.1| putative transcriptional regulator, helix-turn-helix domain
          containing protein [Bacillus cereus]
 gi|218848302|ref|YP_002455035.1| transcriptional regulator [Bacillus cereus AH820]
 gi|116584774|gb|ABK00889.1| putative transcriptional regulator, helix-turn-helix domain
          containing protein [Bacillus cereus]
 gi|116585045|gb|ABK01154.1| putative transcriptional regulator, helix-turn-helix domain
          containing protein [Bacillus cereus]
 gi|218540353|gb|ACK92749.1| transcriptional regulator [Bacillus cereus AH820]
          Length = 64

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + IR E  +TQ E+   T  ++  I  +E G+   ++   I +  +L   L  L 
Sbjct: 4  KVKRIRLEKGMTQGELAKITNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 60


>gi|23012190|ref|ZP_00052337.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1]
          Length = 303

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    L++K +   +G ++ +I++LE+G+  ++I  +  +A+ +   L  L+
Sbjct: 19 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLV 78


>gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK405]
          Length = 169

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
          Length = 169

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 99

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L        
Sbjct: 5  LRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGVKPKDFF 60


>gi|317130611|ref|YP_004096893.1| XRE family transcriptional regulator [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475559|gb|ADU32162.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus
          DSM 2522]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R +  +TQ+++  R G  +  I  +E G+   ++   + +A  L+  L +L 
Sbjct: 3  NNVKITRIKMSITQEQLAKRVGVTRQTIGLIEKGEYNPSLQLCVSIAKVLNKTLDELF 60


>gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56']
 gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56']
          Length = 230

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  +N +  R E  L+ + +   +G +++ + ++E G+ST  I+ +  +A  L  P   L
Sbjct: 50  VVASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQSTPTINVLWKIARALGVPFSAL 109

Query: 81  L 81
           +
Sbjct: 110 M 110


>gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877]
          Length = 191

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 11 VGPRLRQVRKEREVTLAALSETTGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 70


>gi|328948325|ref|YP_004365662.1| hypothetical protein Tresu_1463 [Treponema succinifaciens DSM
          2489]
 gi|328448649|gb|AEB14365.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 105

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + IRKE  +TQ+++      A S+I  +ET K+   +  +  +A  L+     L K
Sbjct: 10 NIKRIRKEKHITQEQLAEACNTATSYIGLMETYKNVPKLSTIEKIADALNVEPEILFK 67


>gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 170

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|154500049|ref|ZP_02038087.1| hypothetical protein BACCAP_03709 [Bacteroides capillosus ATCC
          29799]
 gi|150271139|gb|EDM98408.1| hypothetical protein BACCAP_03709 [Bacteroides capillosus ATCC
          29799]
          Length = 69

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  +  R E KL+Q  +    G +++ IS +ETG+        +IL   LD    +
Sbjct: 5  LILKNRLKEARVEKKLSQAALAEMVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEE 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|77405835|ref|ZP_00782918.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
 gi|77409763|ref|ZP_00786418.1| transcription regulator, probable -related protein [Streptococcus
          agalactiae COH1]
 gi|77171623|gb|EAO74837.1| transcription regulator, probable -related protein [Streptococcus
          agalactiae COH1]
 gi|77175545|gb|EAO78331.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
          Length = 79

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L + +I VN  R  R +A ++Q  +    G A+  I+ +E  K   ++D  I LA  L 
Sbjct: 7  SLLKELIIVNRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQ 66

Query: 75 TPLWKLL 81
          T L  L 
Sbjct: 67 TDLNTLF 73


>gi|99082324|ref|YP_614478.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038604|gb|ABF65216.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
          Length = 187

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R IR  A L+       TG +++ + ++E G+S+  I  +  +A     PL  L++
Sbjct: 9  NLREIRAAAGLSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIE 66


>gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 201

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +T  E+   TG ++S +S LE+G+    ++ ++ LA   + PL  L+
Sbjct: 12 VGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLELLLPLARVYNVPLDDLV 71


>gi|269129114|ref|YP_003302484.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268314072|gb|ACZ00447.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 187

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R     +  ++  R G ++  +  LE G+   N+  +I ++  L  PL +L+
Sbjct: 11 VARTVRSLRAGHGWSLDQLAVRAGVSKGVLVALEQGRGNPNLGTLIRISQALGVPLTRLV 70

Query: 82 K 82
          +
Sbjct: 71 Q 71


>gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 150

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F    + +R+     Q E+  +   ++  +S+ E  ++  +I+ +I ++      + +
Sbjct: 1  MVFGEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQNYPSIEIIIKISDLFGVTIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 225

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 5  KRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
            D P           +       R++R+ + LT +   +R G + + +S LETG+   +
Sbjct: 12 PTDGPADGHPGGPSAELPTVAPRLRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPS 71

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  ++ LA T  T +  LL
Sbjct: 72 LPMLLTLARTYGTTVSDLL 90


>gi|228951504|ref|ZP_04113610.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228808211|gb|EEM54724.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
          Length = 149

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+ ++I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYLSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|257125626|ref|YP_003163740.1| XRE family transcriptional regulator [Leptotrichia buccalis
          C-1013-b]
 gi|257049565|gb|ACV38749.1| transcriptional regulator, XRE family [Leptotrichia buccalis
          C-1013-b]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L      +    + RK+  +TQKE+ + TG  Q  IS++E G +  ++  +  LA   D
Sbjct: 24 SLEAEFQIIREIISARKDKNITQKELSDLTGITQGDISKIENGNANPSLKTLKKLAAAFD 83

Query: 75 TPLW 78
            L 
Sbjct: 84 KKLV 87


>gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018]
 gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019]
          Length = 157

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R+  K+TQ+E+    G +++ I   E G S I+   +  +       L+ +
Sbjct: 1  MVSVNIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes J165]
 gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes SK137]
 gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes J165]
 gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes SK137]
          Length = 508

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R+ RK+  +TQ ++      +QS I  +E+G   ++++ +  +A  L++P+
Sbjct: 9  VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64


>gi|187933844|ref|YP_001884286.1| adenine-specific DNA methyltransferase [Clostridium botulinum B
          str. Eklund 17B]
 gi|187721997|gb|ACD23218.1| adenine-specific DNA methyltransferase [Clostridium botulinum B
          str. Eklund 17B]
          Length = 194

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +        RK   ++Q+E+  RTG +   IS++E   +  +++ +  +A
Sbjct: 1  MVGEKVAKFRKILGISQRELGRRTGLSGQMISKIENNLTNPSLETLGKIA 50


>gi|110004082|emb|CAK98421.1| conserved hypothetical transcriptional regulator transcription
          regulator protein [Spiroplasma citri]
          Length = 177

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     + +R++  LT +E+ NR    + +IS+LE   S+ +I+ +  +   L T L  
Sbjct: 1  MLLGEKIKLLRQKNNLTIEELANRCELTKGFISQLERDISSPSIETLESILEVLGTNLAD 60

Query: 80 LLK 82
            K
Sbjct: 61 FFK 63


>gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium
          IMCC9480]
 gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 191

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A   E        + +R E  LT +++    G ++S +S++E  K+   I     LA+ L
Sbjct: 8  ATPPE---VGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKANPTIAVAWRLANAL 64

Query: 74 DTPLWKLL 81
             + +LL
Sbjct: 65 GVSIAELL 72


>gi|227545281|ref|ZP_03975330.1| possible transcriptional regulator [Lactobacillus reuteri
          CF48-3A]
 gi|300908647|ref|ZP_07126110.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
 gi|227184750|gb|EEI64821.1| possible transcriptional regulator [Lactobacillus reuteri
          CF48-3A]
 gi|300894054|gb|EFK87412.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
          Length = 161

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +  L+Q++I  +    +  +S  E G S  +++  + LA   D  L  L+
Sbjct: 19 FAKQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAFFDVSLDWLV 78


>gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM
          20093]
 gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM
          20093]
          Length = 365

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M F +N  ++R    +TQ+++    G ++  IS+ E+GK+   +D ++I+       L
Sbjct: 15 EIMTFSDNLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKAYPEMDKLLIICDLFTVSL 74

Query: 78 WKLL 81
            L+
Sbjct: 75 DDLV 78


>gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum
          HLK1]
 gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum
          HLK1]
          Length = 120

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I+R +       R  R+   LTQ  +    G  + +I  +E G    +   +  LA TL 
Sbjct: 12 IVRLQKSVGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALARTLK 71

Query: 75 TPLWKLL 81
          TP+    
Sbjct: 72 TPVRDFF 78


>gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 340

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +  RK+ KLTQ ++  R   ++S IS  E G    +I  +I LA+ ++  +  L
Sbjct: 5  VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64

Query: 81 L 81
           
Sbjct: 65 F 65


>gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC
          29799]
 gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC
          29799]
          Length = 451

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          RK++ PH+            +   ++R+E  +TQKE+ +  G +   +S+ E G+S   I
Sbjct: 28 RKKEVPHMDSIRT------GSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEI 81

Query: 64 DNMIILAHTLDTPLWKLL 81
               L  TL     +L+
Sbjct: 82 TLFPALGATLGVTADELM 99


>gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 104

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 26/57 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R       R  RK A LTQ ++  RTGF    IS  ET   T +ID ++  A  L  
Sbjct: 3  RSALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGV 59


>gi|325529272|gb|EGD06223.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  L+Q+E+  R G     IS +E G+ + ++ ++  L   +   L +  
Sbjct: 5  VAERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 206

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+  LTQ+++  +   +++ +S+ E+G+   NI+++  ++   +  + +LL
Sbjct: 3  FNEKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRGYPNIESLKCISKLFEVTIDELL 62


>gi|310639543|ref|YP_003944301.1| transcription regulator [Paenibacillus polymyxa SC2]
 gi|309244493|gb|ADO54060.1| Transcription regulator [Paenibacillus polymyxa SC2]
          Length = 66

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R  RK    TQ+E+ NRTG + + +  +E G  T+  D + I+A TL+  +
Sbjct: 2  ENLQLAQRLRAFRKLKGFTQQELANRTGISLTVLGAVERGNRTVEADMLNIIAQTLEIEV 61

Query: 78 WKL 80
           +L
Sbjct: 62 REL 64


>gi|302330170|gb|ADL20364.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis
          1002]
          Length = 155

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78
            R +RK   L+Q  +   +  +++ IS LE  +++        +  +  LA  L  P  
Sbjct: 28 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 87

Query: 79 KLL 81
           LL
Sbjct: 88 VLL 90


>gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM
          20476]
 gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM
          20476]
          Length = 436

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N   ++RK+A LTQ E+    G     +S+ E GKS  +++++  L+      + +LL
Sbjct: 6  FGNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSKPSVESVRKLSGLFHVSVDELL 65

Query: 82 K 82
          +
Sbjct: 66 R 66


>gi|167851665|ref|ZP_02477173.1| Transcriptional regulator, XRE family protein [Burkholderia
          pseudomallei B7210]
          Length = 72

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +RK+A LTQ ++  + G  QS++S++E G+  +++   +      +TP  +++
Sbjct: 14 LKQVRKDAGLTQVQLAEKLGRGQSYVSKVERGEQYLDVLEFVEWCEACNTPPERVI 69


>gi|167588868|ref|ZP_02381256.1| transcriptional regulator, XRE family protein [Burkholderia
          ubonensis Bu]
          Length = 177

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R +R++ KLT        G ++ ++S++E G++  +I +++ +A  L   +   +
Sbjct: 2  GNRIRTLRRQLKLTLDVTAASAGISKPFLSQIERGRAMPSIASLVGIARALGVTIDHFV 60


>gi|111220943|ref|YP_711737.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a]
 gi|111148475|emb|CAJ60147.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a]
          Length = 498

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILA 70
                  +      R  R+   LTQ+++ +R GF QS++S++E+G+  I +I  +  +A
Sbjct: 10 PPRATPASVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIA 69

Query: 71 HTLDTPLWKL 80
            L      +
Sbjct: 70 RNLALSPEDV 79


>gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 294

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IRK+  L+Q++   + G ++  I++ ET     +IDN+I +    D  + +LL
Sbjct: 3  FSQKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDELL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|126699343|ref|YP_001088240.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|255100870|ref|ZP_05329847.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306758|ref|ZP_05350929.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|115250780|emb|CAJ68604.1| Transcriptional regulator, HTH-type [Clostridium difficile]
          Length = 181

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK+  L+ +++        S +S++E G +  +++++  +A +L+ PL+   
Sbjct: 6  LGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTFF 65


>gi|330465580|ref|YP_004403323.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328808551|gb|AEB42723.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 278

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R+   LT +E+    G +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRVIGVVLRRERQRQGLTLREVARAAGVSVPYLSEVERGRKEASSEVLAAVCRALGLYLS 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 DLLE 68


>gi|323139594|ref|ZP_08074638.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242]
 gi|322395144|gb|EFX97701.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  E+  ++G A+S IS++E  ++   +  +  LA  LD  + ++L
Sbjct: 23 LGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETNPTLATIWRLAQALDVSIERVL 82

Query: 82 K 82
          +
Sbjct: 83 Q 83


>gi|322384169|ref|ZP_08057879.1| transcriptional repressor-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321151061|gb|EFX44378.1| transcriptional repressor-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 139

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
          M F +  R++RK    T +E+ +R+G + ++IS+LE G     + + ++ L+  L+    
Sbjct: 1  MYFYDKLRDLRKLKGYTIRELSDRSGVSTAYISQLENGNRGIPSPEVLMKLSEGLNISYE 60

Query: 79 KLLK 82
          +L++
Sbjct: 61 ELME 64


>gi|291540886|emb|CBL13997.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 118

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|289432065|ref|YP_003461938.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|288945785|gb|ADC73482.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 131

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R E +L+ +E+  ++G + S++  +E G+      D +  LA   D P+  L
Sbjct: 5  FGEYLRTLRVEKRLSLREVEQQSGVSNSYLGLIERGQRPIPGADILKKLAPVYDVPVRDL 64

Query: 81 LK 82
          LK
Sbjct: 65 LK 66


>gi|219871153|ref|YP_002475528.1| transcriptional regulator [Haemophilus parasuis SH0165]
 gi|219691357|gb|ACL32580.1| transcriptional regulator [Haemophilus parasuis SH0165]
          Length = 91

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +   +Q+ + N     ++++S +E  +  +++ N+  LA  L  P W+LLK
Sbjct: 2  QKGWSQERLENECELDRTYVSAVEHCRWNVSLSNIEKLATALSCPAWQLLK 52


>gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter
          bemidjiensis Bem]
 gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin
          domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 181

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R    + +IS+LE   ++ +I  +  +       + +  
Sbjct: 4  GERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQEFF 62


>gi|83644480|ref|YP_432915.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83632523|gb|ABC28490.1| predicted transcriptional regulator [Hahella chejuensis KCTC
          2396]
          Length = 192

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D  L  R+      + +RK  KLT +++  ++  ++S +S++E G++      +  L   
Sbjct: 3  DTDLVARL--GKRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPTFATLWNLTRA 60

Query: 73 LDTPLWKLL 81
          +     +L+
Sbjct: 61 MGIEWSELV 69


>gi|299139477|ref|ZP_07032651.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8]
 gi|298598405|gb|EFI54569.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8]
          Length = 188

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   +  R++R    L+Q+++  R    +++IS++E GK+   + ++  LA  L   +  
Sbjct: 73  LQVASAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALQVDISA 132

Query: 80  LLK 82
           LL+
Sbjct: 133 LLR 135


>gi|288561200|ref|YP_003424686.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288543910|gb|ADC47794.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 108

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK+   TQ+++ +  G  QS +S++E G+   N+  +  L    +     L
Sbjct: 4  VVAKNLKDLRKKNGYTQEQVSDYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYL 63

Query: 81 L 81
          +
Sbjct: 64 I 64


>gi|187777853|ref|ZP_02994326.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC
          15579]
 gi|187774781|gb|EDU38583.1| hypothetical protein CLOSPO_01445 [Clostridium sporogenes ATCC
          15579]
          Length = 140

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
          F   F+NIR E  L+Q+++   +  + + IS +E+G +   + + +  LA  L     +L
Sbjct: 3  FGEFFKNIRTEKGLSQRQLAELSHISNTEISRIESGERRNPSPNTLKSLAPHLGISYGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|182677117|ref|YP_001831263.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182633000|gb|ACB93774.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 205

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  E+  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 23 LGKTVQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 82

Query: 82 K 82
          +
Sbjct: 83 Q 83


>gi|167903989|ref|ZP_02491194.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
          Length = 195

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|220922764|ref|YP_002498066.1| anaerobic benzoate catabolism transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947371|gb|ACL57763.1| transcriptional regulator, XRE family with shikimate kinase
           activity [Methylobacterium nodulans ORS 2060]
          Length = 338

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R  R    +++K +   +G ++ +I++LETG+  ++I  +  +A+ +   L  L+
Sbjct: 49  LGQRVRTARAVRAMSRKVLSQTSGLSERYIAQLETGQGNVSIILLRRVANAMGVRLEDLI 108

Query: 82  KP 83
            P
Sbjct: 109 AP 110


>gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 203

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P                 + +R E KLT  ++    G ++S +SE+E  K+   I   
Sbjct: 14 AAPQSPGVTPPR---VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVA 70

Query: 67 IILAHTLDTPLWKLL 81
            L + L   L +L 
Sbjct: 71 WRLTNALGITLDELF 85


>gi|254975373|ref|ZP_05271845.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092763|ref|ZP_05322241.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255314502|ref|ZP_05356085.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517179|ref|ZP_05384855.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650283|ref|ZP_05397185.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683399|ref|YP_003214684.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686995|ref|YP_003218128.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306520257|ref|ZP_07406604.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|260209562|emb|CBA63177.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260213011|emb|CBE04338.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 181

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK+  L+ +++        S +S++E G +  +++++  +A +L+ PL+   
Sbjct: 6  LGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLFTFF 65


>gi|125622888|ref|YP_001031371.1| putative HTH-type transcriptional regulator [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|2909717|gb|AAC12967.1| unknown [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491696|emb|CAL96615.1| Putative HTH-type transcriptional regulator [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|300069626|gb|ADJ59026.1| putative HTH-type transcriptional regulator [Lactococcus lactis
          subsp. cremoris NZ9000]
          Length = 185

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   N +  R    LTQ+E+     F++  IS  E+ K+  N + +I LA   D+ L
Sbjct: 1  MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALADLYDSDL 57


>gi|15601046|ref|NP_232676.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
          N16961]
 gi|121728097|ref|ZP_01681134.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52]
 gi|147672473|ref|YP_001215786.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153819592|ref|ZP_01972259.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC
          8457]
 gi|153824257|ref|ZP_01976924.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33]
 gi|229506566|ref|ZP_04396075.1| hypothetical protein VCF_001785 [Vibrio cholerae BX 330286]
 gi|229510638|ref|ZP_04400118.1| hypothetical protein VCE_002046 [Vibrio cholerae B33]
 gi|229517231|ref|ZP_04406676.1| hypothetical protein VCC_001252 [Vibrio cholerae RC9]
 gi|229522958|ref|ZP_04412372.1| hypothetical protein VIF_003528 [Vibrio cholerae TM 11079-80]
 gi|229606045|ref|YP_002876749.1| hypothetical protein VCD_000995 [Vibrio cholerae MJ-1236]
 gi|254850521|ref|ZP_05239871.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745921|ref|ZP_05419868.1| predicted transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262163521|ref|ZP_06031267.1| predicted transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262168221|ref|ZP_06035919.1| predicted transcriptional regulator [Vibrio cholerae RC27]
 gi|298500125|ref|ZP_07009931.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657676|gb|AAF96189.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1
          biovar El Tor str. N16961]
 gi|121629645|gb|EAX62066.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52]
 gi|126509874|gb|EAZ72468.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC
          8457]
 gi|126518220|gb|EAZ75445.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33]
 gi|146314856|gb|ABQ19396.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395]
 gi|227014947|gb|ACP11156.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395]
 gi|229340175|gb|EEO05183.1| hypothetical protein VIF_003528 [Vibrio cholerae TM 11079-80]
 gi|229345267|gb|EEO10240.1| hypothetical protein VCC_001252 [Vibrio cholerae RC9]
 gi|229353083|gb|EEO18023.1| hypothetical protein VCE_002046 [Vibrio cholerae B33]
 gi|229356917|gb|EEO21835.1| hypothetical protein VCF_001785 [Vibrio cholerae BX 330286]
 gi|229372531|gb|ACQ62953.1| hypothetical protein VCD_000995 [Vibrio cholerae MJ-1236]
 gi|254846226|gb|EET24640.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735675|gb|EET91073.1| predicted transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262023464|gb|EEY42167.1| predicted transcriptional regulator [Vibrio cholerae RC27]
 gi|262028088|gb|EEY46747.1| predicted transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|297542106|gb|EFH78157.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 207

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIEM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 477

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +R++       R +R+   LTQ     R G + S+++++E  +  ++   ++ LA +   
Sbjct: 1  MRQKFFAGTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSV 60

Query: 76 PLWK 79
           L +
Sbjct: 61 DLSE 64


>gi|170760185|ref|YP_001785975.1| cupin domain-containing protein [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169407174|gb|ACA55585.1| cupin domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 183

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R E  L+  ++   +  ++  +S++E   +   I+ +  +A+ L  P   L
Sbjct: 6  IIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKSDTNPTINTLWKIANGLKVPYTLL 65

Query: 81 LK 82
          L+
Sbjct: 66 LE 67


>gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571]
 gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 231

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + +RK   L+  ++  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 49  LGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDVTVERVL 108


>gi|160894971|ref|ZP_02075745.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50]
 gi|156863402|gb|EDO56833.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50]
          Length = 118

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|154506035|ref|ZP_02042773.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC
          29149]
 gi|153793534|gb|EDN75954.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC
          29149]
          Length = 122

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N   +RK    TQ+EI +    ++   S  ET K T ++D+++ LA      L +L+
Sbjct: 8  ENLYRLRKAHHYTQQEISDLLNISRQAYSNYETSKRTPDLDSLMRLADIYGVSLDQLV 65


>gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
          25986]
 gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC
          25986]
          Length = 208

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IR ++ LTQ E+ ++ G     +   E+G+S   +D M  LA   DT +  L+
Sbjct: 5  FSTRLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVADLM 64


>gi|326330669|ref|ZP_08196973.1| toxin-antitoxin system, antitoxin component, Xre family
          [Nocardioidaceae bacterium Broad-1]
 gi|325951510|gb|EGD43546.1| toxin-antitoxin system, antitoxin component, Xre family
          [Nocardioidaceae bacterium Broad-1]
          Length = 184

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R+ R+ A +T   +   +G +++ IS++E G++      +  L+  L+  L +L+
Sbjct: 6  LAANIRSAREAAGMTVAALAEASGVSRAMISKIERGEAQPTAVLLARLSGALELTLSELI 65


>gi|317497294|ref|ZP_07955617.1| hypothetical protein HMPREF0996_00597 [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316895363|gb|EFV17522.1| hypothetical protein HMPREF0996_00597 [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 55

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          F    R +R++  L+Q++     G  +++ S +E+GK  I++ N+  
Sbjct: 9  FGQRIRELRQKTGLSQEKFALMIGMDRTYFSSVESGKRNISLLNIKK 55


>gi|326793247|ref|YP_004311068.1| hypothetical protein Clole_4198 [Clostridium lentocellum DSM
          5427]
 gi|326544011|gb|ADZ85870.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 143

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N + +RK    TQ+EI  R    +  IS+ E G S  + D +I +A   D  + +L
Sbjct: 1  MFSENLKALRKTKGFTQEEIAIRLNVVRQTISKWEKGLSIPDADILIKIAALFDVSVSEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|284045004|ref|YP_003395344.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949225|gb|ADB51969.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 196

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R+   L+ +++  R+G +   +S++E G+++  +     +AH LD  L +LL+
Sbjct: 13 GSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGETSPTLQVATRIAHGLDLRLSQLLR 72


>gi|282879243|ref|ZP_06287993.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella buccalis ATCC 35310]
 gi|281298636|gb|EFA91055.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella buccalis ATCC 35310]
          Length = 112

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PRR   E  ++ +I   ++      +  R E  LTQ+E+  R G  ++ IS LE G S I
Sbjct: 26 PRRDEFEQRVAASIHAYKL--GEAIKKARIEQNLTQEELGERIGVKRAQISRLEKGYS-I 82

Query: 62 NIDNMIILAHTLDTP 76
          +I  M  +   L  P
Sbjct: 83 SIPTMSRVFKALGVP 97


>gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens
          DSM 30120]
 gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens
          DSM 30120]
          Length = 214

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
           I     ++IR+   L+Q ++    G++  S I   E G+  I+ D+ ++++  L     
Sbjct: 6  EIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVSPA 65

Query: 79 KLL 81
          +L+
Sbjct: 66 ELM 68


>gi|183980823|ref|YP_001849114.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183174149|gb|ACC39259.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 138

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  ++    +S    +   I  +  R  R+ A ++ +++  R+G +  ++S++E G   
Sbjct: 1  MPGEEKLGAKVSAVSSKASDI-GSFIRTQRENAHVSMRQLAERSGVSNPYLSQVERGLRK 59

Query: 61 INIDNMIILAHTLDTPLWKL 80
           + D +  +A  L      L
Sbjct: 60 PSADVLAQIAKALRVSAEVL 79


>gi|146306212|ref|YP_001186677.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574413|gb|ABP83945.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp]
          Length = 81

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R +  L+Q+ + +  G  +S + ++E G+  +   N+  +A  L      LL
Sbjct: 17 LGKAVRARRAQQALSQEALADAAGIDRSHMGKIERGERNVTFLNIARIASALGCKPSDLL 76


>gi|18978166|ref|NP_579523.1| inosine-5'-monophosphate dehydrogenase related protein I
          [Pyrococcus furiosus DSM 3638]
 gi|18893973|gb|AAL81918.1| inosine-5'-monophosphate dehydrogenase related protein I
          [Pyrococcus furiosus DSM 3638]
          Length = 187

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          ++  R I   + R IRKE  +TQ+E+  + G  Q++I++LE GK    +     +   L
Sbjct: 2  VIIPRPIDPRDIRRIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNKILRAL 60


>gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
          391-98]
          Length = 107

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides
          sp. BAV1]
 gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family
          [Dehalococcoides sp. BAV1]
          Length = 207

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
              + +R    +TQ ++ + +G  + +IS LE  KST  + + +  +A  L  
Sbjct: 6  GLKVKQLRIARGMTQAKLADASGLTRGYISMLELRKSTMPSYEALSKIARALGV 59


>gi|47095311|ref|ZP_00232922.1| repressor protein, putative [Listeria monocytogenes str. 1/2a
          F6854]
 gi|217965156|ref|YP_002350834.1| hypothetical protein LMHCC_1879 [Listeria monocytogenes HCC23]
 gi|224499618|ref|ZP_03667967.1| hypothetical protein LmonF1_07939 [Listeria monocytogenes Finland
          1988]
 gi|254828832|ref|ZP_05233519.1| transcriptional regulator [Listeria monocytogenes FSL N3-165]
 gi|254830262|ref|ZP_05234917.1| hypothetical protein Lmon1_02837 [Listeria monocytogenes 10403S]
 gi|254900016|ref|ZP_05259940.1| hypothetical protein LmonJ_09385 [Listeria monocytogenes J0161]
 gi|254911432|ref|ZP_05261444.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935757|ref|ZP_05267454.1| transcriptional regulator [Listeria monocytogenes F6900]
 gi|255026248|ref|ZP_05298234.1| hypothetical protein LmonocytFSL_07720 [Listeria monocytogenes
          FSL J2-003]
 gi|284801080|ref|YP_003412945.1| hypothetical protein LM5578_0829 [Listeria monocytogenes 08-5578]
 gi|284994222|ref|YP_003415990.1| hypothetical protein LM5923_0784 [Listeria monocytogenes 08-5923]
 gi|47016382|gb|EAL07304.1| repressor protein, putative [Listeria monocytogenes str. 1/2a
          F6854]
 gi|217334426|gb|ACK40220.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|258601245|gb|EEW14570.1| transcriptional regulator [Listeria monocytogenes FSL N3-165]
 gi|258608344|gb|EEW20952.1| transcriptional regulator [Listeria monocytogenes F6900]
 gi|284056642|gb|ADB67583.1| hypothetical protein LM5578_0829 [Listeria monocytogenes 08-5578]
 gi|284059689|gb|ADB70628.1| hypothetical protein LM5923_0784 [Listeria monocytogenes 08-5923]
 gi|293589374|gb|EFF97708.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307570284|emb|CAR83463.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes
          L99]
          Length = 68

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  ++Q+E+      ++  IS +E G     ++  I +   L   L  L 
Sbjct: 5  KMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF 61


>gi|332298674|ref|YP_004440596.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332181777|gb|AEE17465.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 117

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R IF  N +  RK+  L+Q+++      + + +S +ETG   +    +  +    +    
Sbjct: 13 RKIFGENVKYYRKQMGLSQEQLSEILEISPNHLSVIETGGKFVTYKLLEKMIDVFNIAPS 72

Query: 79 KLL 81
           L 
Sbjct: 73 LLF 75


>gi|328958843|ref|YP_004373754.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
          17-4]
 gi|328675167|gb|AEB31212.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
          17-4]
          Length = 65

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R +  LTQ+++  +    +  IS +E GK   ++   + + H ++  L +L 
Sbjct: 3  NRIKVARIQVDLTQQQLAEKVDVTRQTISLIEKGKYNPSLKLCLNICHAVNKTLDELF 60


>gi|323141018|ref|ZP_08075925.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322414507|gb|EFY05319.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 120

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 37/68 (54%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  +  +  NN + +R +++++Q+ +      +Q+ +S LE GK+ +++   I ++  L
Sbjct: 5  TVNPDYKLIGNNIKQMRTKSQVSQQSLAKAINISQTHMSNLENGKTGVSLAIAIRISQHL 64

Query: 74 DTPLWKLL 81
             L +L+
Sbjct: 65 KCSLDELI 72


>gi|313906268|ref|ZP_07839612.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313468888|gb|EFR64246.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 96

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R    +TQKE+  RTG AQ+ IS+LE G    +I  +  LA  +D  L     P
Sbjct: 36 ARISQNMTQKELAERTGIAQTEISKLENGTRNPSIKLLQRLAEGMDMVLNISFTP 90


>gi|256599668|pdb|3FYA|A Chain A, Crystal Structure Of An R35a Mutant Of The Restriction-
          Modification Controller Protein C.Esp1396i
 gi|256599669|pdb|3FYA|B Chain B, Crystal Structure Of An R35a Mutant Of The Restriction-
          Modification Controller Protein C.Esp1396i
          Length = 99

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 26/51 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + IR E  +TQ+++  ++    ++IS +E     + I ++ ++   L+  
Sbjct: 33 IKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVS 83


>gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
          Length = 313

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE  LTQ+++  + G +   +S  ETG +  ++  ++ LA   D  + +LL
Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRELL 65


>gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50]
 gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50]
          Length = 313

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE  LTQ+++  + G +   +S  ETG +  ++  ++ LA   D  + +LL
Sbjct: 10 LKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQLAEYYDVEMRELL 65


>gi|145594859|ref|YP_001159156.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145304196|gb|ABP54778.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 203

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N   +R  A ++  ++      +++ +  +E G     +  +  LA  L  PL +LL
Sbjct: 29 VGSNVHRLRNTAGMSLADLATAGDISKTTLHGIEQGHGNPTLSTLWALATALRVPLGELL 88

Query: 82 K 82
          +
Sbjct: 89 E 89


>gi|119946356|ref|YP_944036.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii
          37]
 gi|119864960|gb|ABM04437.1| predicted DNA-binding transcriptional regulator, helix-turn-helix
          domain [Psychromonas ingrahamii 37]
          Length = 208

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  K      SD I   ++      + IRK   LT +E   +TG A+S +S++E  + + 
Sbjct: 11 PSMKISNDRGSDKIEPVKL--GERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISP 68

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  L   L   L +L  P
Sbjct: 69 TFQAMQKLTRGLQIDLPQLFAP 90


>gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli
           CNPAF512]
          Length = 220

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 44  GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 102


>gi|295132594|ref|YP_003583270.1| helix-turn-helix domain-containing protein [Zunongwangia profunda
          SM-A87]
 gi|294980609|gb|ADF51074.1| helix-turn-helix domain-containing protein [Zunongwangia profunda
          SM-A87]
          Length = 73

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+E  L QK         ++ +  +E GK+   +  +I +A  L+ PL KL+
Sbjct: 12 LGARIKQLREEKGLDQKTFAFDCEIGRTQLYMIENGKTNPRLLTLIKIAKGLEVPLKKLI 71


>gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 190

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR++   T   +   TG A S +S LE+G+   +++ ++ +A     PL +L+
Sbjct: 8  VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 67


>gi|284028775|ref|YP_003378706.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283808068|gb|ADB29907.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 116

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 33/65 (50%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++D ++ +     +  R  R   +LTQ+++  R G ++SW++ +E+G        ++ L 
Sbjct: 1  MADVVIPDWTKLGSTLRAARSRQRLTQEQVAERAGVSRSWLARVESGHRAAEFQQVLRLV 60

Query: 71 HTLDT 75
          + L  
Sbjct: 61 NALGM 65


>gi|183600843|ref|ZP_02962336.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC
          25827]
 gi|188019628|gb|EDU57668.1| hypothetical protein PROSTU_04445 [Providencia stuartii ATCC
          25827]
          Length = 234

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       +  RK A +TQ E+    G +Q+ I ++ETGK+  +   +I ++  L+    
Sbjct: 2  KTTLAQRLKQARKNAGITQNELAKLVGVSQAAIQKIETGKAATST-RLIEISKALNVDPE 60

Query: 79 KL 80
           L
Sbjct: 61 WL 62


>gi|182437780|ref|YP_001825499.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326778414|ref|ZP_08237679.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178466296|dbj|BAG20816.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326658747|gb|EGE43593.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 162

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ + TG +  ++S++E G    + D +  +A  L      L
Sbjct: 9  LGEYLREQRRAAQLSLRQLADATGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67


>gi|312888681|ref|ZP_07748249.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311298848|gb|EFQ75949.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 81

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L   +L   ++F  + +++RKE KLT +++  R       I ++E+GK  I +  +I LA
Sbjct: 5  LDKKVL---ILFGKHHKSLRKERKLTYRQMAQRCNIDYGDIQKIESGKINITMLTLIELA 61

Query: 71 HTLDTPLWKLL 81
            L+ P   LL
Sbjct: 62 KGLNLPPKDLL 72


>gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 158

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL--- 77
          +   N + +RK   LTQ E     G +++ +S  E G S+++ + +  +    +      
Sbjct: 1  MIGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGASSVSTELIDRICQKFNVSYIDI 60

Query: 78 ---WKLLKP 83
              KLL P
Sbjct: 61 VGEEKLLTP 69


>gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 135

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
               +    M      R+ R +  ++Q +I  RTG  + ++S +E G +  +++ +  +
Sbjct: 11 QADVPVKSISMNIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKI 70

Query: 70 AHTLDTPLWKLL 81
          A  LD  L +  
Sbjct: 71 AGALDLQLSQFF 82


>gi|302547803|ref|ZP_07300145.1| putative Helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302465421|gb|EFL28514.1| putative Helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 197

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+E   T  ++   TG + S +S LE+G+    ++ ++ LA T    L +L+
Sbjct: 13 VGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKTYGVQLDELV 72


>gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 200

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 5  KRDEPHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
             +P  ++     R +        R +R    LT  ++  RTG  +S +S LE G    
Sbjct: 2  PTSKPPKTEQPPTRRHVLDAVGPRLRELRHRRGLTLADLAERTGINESTLSRLEGGARKP 61

Query: 62 NIDNMIILAHTLDTPLWKLL 81
           ++ ++ LA     PL  L+
Sbjct: 62 TLELLLPLAEVYAVPLDDLV 81


>gi|300776123|ref|ZP_07085982.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC
          35910]
 gi|300505256|gb|EFK36395.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC
          35910]
          Length = 97

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R IR+   LTQ+ +    G +Q   S++E  K  IN++ +  ++  L+     
Sbjct: 2  KVCGQNIRKIRRSKDLTQEYMAFEMGISQKAYSDIENSKVKINLEILTKISDILEIRPSD 61

Query: 80 L 80
          +
Sbjct: 62 I 62


>gi|254171970|ref|ZP_04878646.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4]
 gi|214033866|gb|EEB74692.1| inosine monophosphate dehydrogenase [Thermococcus sp. AM4]
          Length = 191

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           R IRKE  +TQ+E+  + G  Q++I++LE+G+    +     +   L
Sbjct: 12 IRKIRKELGITQEELARKAGVTQAYIAKLESGRVDPRLSTFNRILQAL 59


>gi|169830948|ref|YP_001716930.1| helix-turn-helix domain-containing protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169637792|gb|ACA59298.1| helix-turn-helix domain protein [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 123

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    L Q ++    G  +S ++  E G    ++D +I L+ T    L +L+
Sbjct: 4  FGETLKRLRHRMGLRQNDVAGMLGVERSTVANWERGVKQPSLDTLIKLSETFGVSLDELV 63


>gi|157961714|ref|YP_001501748.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
          700345]
 gi|157963271|ref|YP_001503305.1| XRE family transcriptional regulator [Shewanella pealeana ATCC
          700345]
 gi|157846714|gb|ABV87213.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
          700345]
 gi|157848271|gb|ABV88770.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC
          700345]
          Length = 68

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R  RKE  ++Q ++       +S+   +E G+  I ++    LA  L+  + +LL
Sbjct: 8  FGFNLRKKRKELGMSQDKLALLAEIDRSYGGRIERGEVNITLEKAYQLAEVLECDVRELL 67


>gi|116332766|ref|YP_794293.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC
          367]
 gi|116098113|gb|ABJ63262.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC
          367]
          Length = 104

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R + +LTQ+ +  +   ++  IS  ETGKS  +ID+++ L++     L  
Sbjct: 1  MTLGAKLKQARADHQLTQQAVATQVAVSRQTISSWETGKSFPDIDSLVTLSNLYGLSLDI 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|307287056|ref|ZP_07567129.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306501835|gb|EFM71125.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|315165830|gb|EFU09847.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
          Length = 105

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLD 74
           N  R +R    +TQ+++  + GF  S++  +E GKS  I I+ +  + H LD
Sbjct: 8  ANRIRELRIAKNMTQEKLAEKIGFDVSFLGRIERGKSANIQINTLEKIIHALD 60


>gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 206

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 1  MPRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M  R R  D   +               + +RK   L+  E+  ++G A+S IS++E  +
Sbjct: 1  MSGRTRSLDRGDMDAGAQAITGQLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNE 60

Query: 59 STINIDNMIILAHTLDTPLWKLL 81
          +   +  +  L+  LD  + + +
Sbjct: 61 TNPTLATVWRLSQALDVSIDRFM 83


>gi|265995718|ref|ZP_06108275.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|262767002|gb|EEZ12620.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
          Ether]
          Length = 642

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 2  NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58


>gi|322421833|ref|YP_004201056.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320128220|gb|ADW15780.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 124

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R  R +  LTQK++  RTG AQ  ISE+E GK  I  D    LA  L+ 
Sbjct: 69  IRGARGKEGLTQKQLAQRTGIAQHHISEMENGKRPIGKDTARRLADALNI 118


>gi|229087060|ref|ZP_04219212.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44]
 gi|228696253|gb|EEL49086.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44]
          Length = 190

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R IR E KL+ +E+  +TG ++  + ++E G++   +  +  +   L  P  +
Sbjct: 14 QQVGQLLRKIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLGVIWKITKGLSIPFSR 73

Query: 80 LL 81
          L+
Sbjct: 74 LM 75


>gi|229194008|ref|ZP_04320903.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876]
 gi|228589445|gb|EEK47369.1| Transcriptional regulator, pbsX [Bacillus cereus ATCC 10876]
          Length = 65

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +A  L T +  + 
Sbjct: 2  NKIAELRKEKLISQEKLAAQVGLSRTYISEIENNKKQPNVKLAIKIAKVLGTSVESIF 59


>gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium
          baculatum DSM 4028]
 gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium
          baculatum DSM 4028]
          Length = 1143

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   +TQ+ +    G  +  + ++E G+   ++D +   A  L+T +    
Sbjct: 6  VGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQVANFF 65


>gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel
          [Sinorhizobium fredii NGR234]
 gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel
          [Sinorhizobium fredii NGR234]
          Length = 197

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
             +  A+           R +R    LT  E+  R+G +++ IS +E G+++     + 
Sbjct: 3  SQIMEQAVPSLEQTIGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEASPTAQLLA 62

Query: 68 ILAHTLDTPLWKLL 81
           L   L T L  L 
Sbjct: 63 KLCSALGTTLSALF 76


>gi|23502705|ref|NP_698832.1| Cro/CI family transcriptional regulator [Brucella suis 1330]
 gi|261754250|ref|ZP_05997959.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|23348718|gb|AAN30747.1| transcriptional regulator, Cro/CI family [Brucella suis 1330]
 gi|261744003|gb|EEY31929.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 642

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 2  NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58


>gi|330718310|ref|ZP_08312910.1| XRE-family DNA-binding domain-containing protein [Leuconostoc
          fallax KCTC 3537]
          Length = 302

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +R++ KL+Q  +  +    +  +S+ E G +  +ID +I LA  L+  L  L
Sbjct: 4  VFSEQLITLRQKKKLSQHALAQKIFVTRQSVSKWENGDAEPSIDKLISLAEILNVDLNHL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|325261429|ref|ZP_08128167.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324032883|gb|EGB94160.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 67

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N RNIR++   TQKEI +     Q+  S+ E GK  I ++    LA      +  L
Sbjct: 1  MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|325261427|ref|ZP_08128165.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324032881|gb|EGB94158.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 67

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N RNIR++   TQKEI +     Q+  S+ E GK  I ++    LA      +  L
Sbjct: 1  MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|228993099|ref|ZP_04153022.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM
          12442]
 gi|228999148|ref|ZP_04158730.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17]
 gi|229006696|ref|ZP_04164330.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4]
 gi|228754557|gb|EEM03968.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4]
 gi|228760765|gb|EEM09729.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17]
 gi|228766747|gb|EEM15387.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM
          12442]
          Length = 181

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  ++  L+ PL  LL
Sbjct: 4  GSAIREIRQRRGVTIAQICEGTGLSKGFMSQVENNKTSPSISTLETISKFLNVPLPYLL 62


>gi|225164027|ref|ZP_03726313.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224801370|gb|EEG19680.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 74

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R    LTQ+E+  +   + ++I  LE G+   ++  ++ +A  L      L+
Sbjct: 10 LGAVIRECRVALDLTQEELAEKADLSTNYIGNLERGEQEPSVTALVKVAAGLGITASSLI 69


>gi|224540895|ref|ZP_03681434.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526193|gb|EEF95298.1| hypothetical protein CATMIT_00038 [Catenibacterium mitsuokai DSM
           15897]
          Length = 117

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 12  SDAILRERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           S+ + +E+  +        +  R E ++TQ+ +    G ++  +S+ E G S  +  N+I
Sbjct: 40  SEPVRKEKEEYAKTLGGVIKKHRMECQMTQEFVAETLGVSRQAVSKWENGSSDPSTTNLI 99

Query: 68  ILAHTLDTPLWKLLK 82
            LA   D    ++LK
Sbjct: 100 ALASLFDITPEEMLK 114


>gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 179

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +  LTQ+E+  R   ++ +IS+LE   ++ +I  ++ +  +L T +    
Sbjct: 4  GEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLMDILESLGTNIKDFF 62


>gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 107

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK    +Q E+  + G     + + E GKS I +D +I +A  LD PL  +L
Sbjct: 4  GEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLSAIL 62


>gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor
          [Saccharopolyspora erythraea NRRL 2338]
          Length = 187

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR++   T   +   TG A S +S LE+G+   +++ ++ +A     PL +L+
Sbjct: 5  VGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 64


>gi|88856689|ref|ZP_01131345.1| putative regulatory protein [marine actinobacterium PHSC20C1]
 gi|88814150|gb|EAR24016.1| putative regulatory protein [marine actinobacterium PHSC20C1]
          Length = 195

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S  I  E        R  R+   LT  ++   TG ++S +S LE+G+   +++ ++ +  
Sbjct: 4  SQRIETELGQIAPRLRRARQNKNLTLDDLAQATGISKSTLSRLESGQRKPSLELLLPVVA 63

Query: 72 TLDTPLWKLLK 82
           L  PL +++ 
Sbjct: 64 ALSVPLDQIVT 74


>gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
          [Kineococcus radiotolerans SRS30216]
 gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
          [Kineococcus radiotolerans SRS30216]
          Length = 516

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R+ RK   LTQ ++  R G +QS +  +E G+  ++ID +  + H L   +  + +P
Sbjct: 22 IRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRVGHALQDDIVSIGRP 79


>gi|328958487|ref|YP_004375873.1| conserved hypothetical protein; possible transcriptional
          regulator [Carnobacterium sp. 17-4]
 gi|328674811|gb|AEB30857.1| conserved hypothetical protein; possible transcriptional
          regulator [Carnobacterium sp. 17-4]
          Length = 183

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER +      +  R     +Q ++      ++  IS+ ETG    ++DN++ L+   +  
Sbjct: 10 ERHMALGERLKESRVSKGFSQGDVAEHLQISRQSISKWETGNGYPDLDNLVKLSVYYEVS 69

Query: 77 LWKLLK 82
          +  LLK
Sbjct: 70 IDDLLK 75


>gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
          Length = 113

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK+A LTQ E+  R G  QS  ++ E GK     +N++ +A  LD  +  
Sbjct: 1  MAFAERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSIDY 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 253

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQK++  +   +   +S+ E G S  N+  +I +A  LD  + +LL
Sbjct: 9  FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVSVTELL 68

Query: 82 K 82
          +
Sbjct: 69 R 69


>gi|270291165|ref|ZP_06197388.1| predicted protein [Pediococcus acidilactici 7_4]
 gi|270280561|gb|EFA26396.1| predicted protein [Pediococcus acidilactici 7_4]
          Length = 114

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
              + +RKE+ LTQ+E+  ++  + ++IS +E   +  I+  N+  +A  L     +LL
Sbjct: 8  GKLIKQVRKESGLTQEELAEKSDLSVNFISRIERTDNQNISWKNIEAIAEALGLSTIELL 67

Query: 82 K 82
          +
Sbjct: 68 Q 68


>gi|257791171|ref|YP_003181777.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|325832901|ref|ZP_08165574.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475068|gb|ACV55388.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|325485766|gb|EGC88230.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 64

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  +  R  R+   L+Q+++    G ++S I  +E+G+ ++ +D++  +A  LD  +  
Sbjct: 1  MLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQVRD 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|228994857|ref|ZP_04154652.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764882|gb|EEM13641.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
          Length = 64

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + IR E  +TQ E+   T  ++  I  +E G+   ++   I +  +L   L  L 
Sbjct: 4  KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLF 60


>gi|291286686|ref|YP_003503502.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290883846|gb|ADD67546.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 72

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKL 80
          F    R +R E  +TQ+E+  ++G    ++ +LE    S+  +  +  LA  LD  + +L
Sbjct: 8  FGKKLRQLRTERNMTQEELAEKSGIDYKYLQKLEGQSPSSPTLSTLEKLAVGLDITIIQL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|194016509|ref|ZP_03055123.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
 gi|194011982|gb|EDW21550.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
          Length = 153

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + +RK  + TQ+E+  + G ++  +++ E+G++  +I+N   LA      L  L+
Sbjct: 13 NLKKMRKIHRFTQEEVAEKIGVSRQAVAKWESGETVPDINNCKALAELYGVALDDLV 69


>gi|169351011|ref|ZP_02867949.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM
          1552]
 gi|169292073|gb|EDS74206.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM
          1552]
          Length = 117

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  R    L+Q+ +   +  + + IS +E G + +++  ++ +A+ L      
Sbjct: 6  ELIGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALAVSADF 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
 gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
          Length = 122

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I  NN + +RK+ +L Q E+  +   +Q  +   ETG++    D + ILA   D    
Sbjct: 6  RKILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFFDVSTD 65

Query: 79 KLL 81
           LL
Sbjct: 66 YLL 68


>gi|325299767|ref|YP_004259684.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319320|gb|ADY37211.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 103

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +    RN RKE K+TQK++  + G  QS+I+ +E G+  + + +   +AH L+  L
Sbjct: 43 YGEILRNRRKELKMTQKQLAQKIGKEQSYIARVEKGEVDMQLSSFFRIAHALNIEL 98


>gi|318059210|ref|ZP_07977933.1| hypothetical protein SSA3_14776 [Streptomyces sp. SA3_actG]
          Length = 174

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+   L+   +  R+G  ++ +S LE G     ++ +  +   L  PL
Sbjct: 8  VGARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPL 63


>gi|302879041|ref|YP_003847605.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581830|gb|ADL55841.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 82

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    + +R +  LTQ ++  R    +S IS LE  +   ++  +  LA  L  P   
Sbjct: 9  KMFGAVLQELRLQQALTQDQLAERADTERSHISALERAEKGPSLATIFSLADALKIPAGD 68

Query: 80 LLK 82
          L+ 
Sbjct: 69 LMT 71


>gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
 gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
          Length = 436

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +R++     R  R    + Q ++  R G + S+++ +E     I    ++ LA  L  
Sbjct: 1  MPDRLMIGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEALKV 60

Query: 76 PLWKLLK 82
             +L +
Sbjct: 61 EPSQLTQ 67


>gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 197

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ RKE  L+Q ++      ++  IS  E G +  +I N+++L+   +  L K
Sbjct: 1  MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|82700630|ref|YP_415204.1| SAM-binding domain-containing protein [Brucella melitensis biovar
          Abortus 2308]
 gi|260168049|ref|ZP_05754860.1| SAM-binding motif-containing protein [Brucella sp. F5/99]
 gi|260884562|ref|ZP_05896176.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261219422|ref|ZP_05933703.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261222969|ref|ZP_05937250.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261315797|ref|ZP_05954994.1| conserved hypothetical protein [Brucella pinnipedialis
          M163/99/10]
 gi|261316343|ref|ZP_05955540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261322485|ref|ZP_05961682.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325879|ref|ZP_05965076.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261750997|ref|ZP_05994706.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|265987413|ref|ZP_06099970.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265991880|ref|ZP_06104437.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|265998928|ref|ZP_06111485.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294851095|ref|ZP_06791771.1| SAM-binding domain-containing protein-containing protein
          [Brucella sp. NVSL 07-0026]
 gi|82616731|emb|CAJ11816.1| SAM (and some other nucleotide) binding motif:Helix-turn-helix
          motif [Brucella melitensis biovar Abortus 2308]
 gi|260874090|gb|EEX81159.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260921553|gb|EEX88206.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260924511|gb|EEX91079.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261295175|gb|EEX98671.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261295566|gb|EEX99062.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261301859|gb|EEY05356.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261304823|gb|EEY08320.1| conserved hypothetical protein [Brucella pinnipedialis
          M163/99/10]
 gi|261740750|gb|EEY28676.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|262553617|gb|EEZ09386.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|263002836|gb|EEZ15239.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|264659610|gb|EEZ29871.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821738|gb|EFG38734.1| SAM-binding domain-containing protein-containing protein
          [Brucella sp. NVSL 07-0026]
 gi|326409859|gb|ADZ66924.1| transcriptional regulator, Cro/CI family [Brucella melitensis
          M28]
 gi|326539572|gb|ADZ87787.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 642

 Score = 52.7 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 2  NLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58


>gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp.
          3_2_56FAA]
 gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp.
          3_2_56FAA]
          Length = 239

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +RKE   +Q+E+ NR   ++  +S+ E G +T  ++ ++ L+      + +L+
Sbjct: 3  FYENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTTPELNKLMELSRIFQVSIDELV 62


>gi|291533822|emb|CBL06935.1| Helix-turn-helix [Megamonas hypermegale ART12/1]
          Length = 102

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    R E K+TQK++  R G + + +S +E  K       +  +A  L+  L +L++
Sbjct: 35 NICEKRHEKKMTQKQLAMRAGISTAMVSFIENDKRQPTFLVIASIAKALNVKLDELVE 92


>gi|262278864|ref|ZP_06056649.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259215|gb|EEY77948.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 197

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R     T   +  R   ++S IS +E G+++     +  LA+ L  PL +L 
Sbjct: 9  AQQVRELRLARGYTLDVLATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67


>gi|258513952|ref|YP_003190174.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257777657|gb|ACV61551.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 71

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N R    R    +TQK++ +  G A+  ++ +E G    +I+  I +   L   L +L
Sbjct: 2  GKNLRIKAARAAKDMTQKDLADAVGVARQTMNAIEKGDYNPSINLCISICKILGKTLDQL 61

Query: 81 L 81
           
Sbjct: 62 F 62


>gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702]
 gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702]
          Length = 124

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R  A +TQ+++  R    ++ IS  E  +   + + +I +A         LL
Sbjct: 22 FGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYLL 81


>gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168]
 gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168]
          Length = 301

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R++RKE KL QK++    G AQ+ I+  E      N D +  LA   +  +  LL
Sbjct: 4  FASRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQNLRFPNQDILNKLADYFNVSIDYLL 63


>gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae]
          Length = 116

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N+RK+A LTQ ++  + G +Q   +  E G      DN++ +A  L+  +  L+
Sbjct: 3  FSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYLV 62


>gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL
          F2-515]
          Length = 163

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
 gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459]
 gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
 gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype
          4b str. CLIP 80459]
 gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23]
 gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|171910469|ref|ZP_02925939.1| Transcriptional regulator, XRE family protein [Verrucomicrobium
          spinosum DSM 4136]
          Length = 198

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR+         A    R +     + +R +   + + +   +G ++S +SE+E  ++ 
Sbjct: 1  MPRKAAARVKDVPAEAISRHL-GARVKQLRSDRNWSLEALAGASGVSRSMLSEIEREQAN 59

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
            +   + +A      L +L++
Sbjct: 60 PTLAVTLRIAQAFGMSLSELIE 81


>gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
 gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str.
          F2365]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|37676118|ref|NP_936514.1| transcriptional regulator [Vibrio vulnificus YJ016]
 gi|37200659|dbj|BAC96484.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
          Length = 507

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|24411175|emb|CAC80863.1| RtrR protein [Acinetobacter sp.]
          Length = 89

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 26/46 (56%)

Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          TQ+ +  + G  +S+I  +E G+  + ++ +  +A  L+  + +++
Sbjct: 22 TQEALALQCGIDRSYIGRIERGEVNLTVEKLYEIATALEVDMKEII 67


>gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus
          LMD-9]
 gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus
          LMD-9]
          Length = 170

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +R E  ++Q ++    G  +  IS+ E  KS     N+  +A   +    +L 
Sbjct: 8  FGPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLF 67


>gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL
          J1-175]
 gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL
          N1-017]
 gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858]
 gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503]
 gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262]
 gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL
          N1-017]
 gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816]
 gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220]
 gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e]
 gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland
          1988]
 gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL
          R2-561]
 gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S]
 gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161]
 gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28]
 gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578]
 gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923]
 gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e]
 gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165]
 gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900]
 gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578]
 gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923]
 gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-28]
 gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus
          Rock3-28]
          Length = 107

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +  ++  E+  + G A+S+IS +E   +   +I  +  +A  L  P+  
Sbjct: 1  MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 63

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN R  RKE  ++Q+++  R   ++  I+ +E  K    +     LA  L   + +L K
Sbjct: 3  NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELFK 61


>gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514]
 gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514]
          Length = 203

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E   +   + N +G ++S IS++E  ++   +     +A      L +L+
Sbjct: 26 FCRRLKQLRAERGWSLDSLANASGVSRSMISQVERNQANPTLAVAFRIARAFGMSLAELV 85

Query: 82 K 82
          +
Sbjct: 86 E 86


>gi|157150600|ref|YP_001449787.1| DNA-binding protein [Streptococcus gordonii str. Challis substr.
          CH1]
 gi|157075394|gb|ABV10077.1| DNA-binding protein [Streptococcus gordonii str. Challis substr.
          CH1]
          Length = 70

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 20 MIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          MI   N +    R E  +TQ ++ +  G  +  I  +E GK   ++   + +   L+  L
Sbjct: 5  MIMAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTL 64

Query: 78 WKLL 81
           +L 
Sbjct: 65 DQLF 68


>gi|89100997|ref|ZP_01173841.1| hypothetical protein B14911_09197 [Bacillus sp. NRRL B-14911]
 gi|89084293|gb|EAR63450.1| hypothetical protein B14911_09197 [Bacillus sp. NRRL B-14911]
          Length = 177

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RK   LTQ ++ +     +++ S++E+G    ++D    LA  LD     LL
Sbjct: 9  LRKNKNLTQADVADSIFIDRAYYSQIESGTRNPSVDISRNLAKVLDINPSLLL 61


>gi|147668863|ref|YP_001213681.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269811|gb|ABQ16803.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
          Length = 131

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R E +L+ +E+  ++G + S++  +E G+      D +  LA   D P+  L
Sbjct: 5  FGEYLRTLRVEKRLSLREVEQQSGVSNSYLGLIERGQRPIPGADILKKLAPVYDVPVRDL 64

Query: 81 LK 82
          LK
Sbjct: 65 LK 66


>gi|331005361|ref|ZP_08328745.1| DNA-binding protein [gamma proteobacterium IMCC1989]
 gi|330420815|gb|EGG95097.1| DNA-binding protein [gamma proteobacterium IMCC1989]
          Length = 190

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +RK+ KLT  ++ + +G ++S +S++E G++   +     +A      + +
Sbjct: 12 QVLCQRVTELRKKNKLTLIQLASLSGVSRSMLSQIERGQANPTLAVTFRIAQAFGMSIGE 71

Query: 80 LLK 82
          L++
Sbjct: 72 LVE 74


>gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18]
 gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18]
          Length = 181

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ+E+ +R    + +IS+LE   ++ +I  +  +       + +  
Sbjct: 4  GERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQEFF 62


>gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
 gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
          Length = 198

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+ A LTQ E+  R   ++  IS  ETGKS  +++++ +     D     LLK
Sbjct: 4  GQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKSYPDVESVSLACDLFDVSADALLK 63


>gi|323339906|ref|ZP_08080175.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644]
 gi|323092779|gb|EFZ35382.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644]
          Length = 179

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               ++ R E+  TQ+++  +   ++  IS  E G++  +I +++ L+   D  L  L+K
Sbjct: 48  GKRLKDARIESGYTQEQVAEQLDVSRQTISSWENGRTFPDIVSVVSLSDIYDVSLDVLIK 107


>gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans
          DSM 16841]
 gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans
          DSM 16841]
          Length = 305

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+       R  R E  +TQ+++  +    +  +S  ETG+   +I  +  LA  L   +
Sbjct: 2  EKEKIGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 TELL 65


>gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 108

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R +RK   LTQ+ +      +   +  LE    + + D +  LA  L+ P  
Sbjct: 6  REELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAFSPSFDTLTKLAKGLNVPKV 65

Query: 79 KLLK 82
           L+ 
Sbjct: 66 ALIT 69


>gi|56695066|ref|YP_165413.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56676803|gb|AAV93469.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 189

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R+   L+ + + N +G ++S +S++E G+S+  I  +  L   L  
Sbjct: 15 RLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQV 65


>gi|326424421|ref|NP_763514.2| putative transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|319999811|gb|AAO08504.2| Predicted transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 507

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVIAEVFQKDPAWFL 80


>gi|315182632|gb|ADT89545.1| transcriptional regulator, HTH_3 family [Vibrio furnissii NCTC
          11218]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes HL037PA2]
 gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes HL037PA3]
 gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium sp. P08]
          Length = 508

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R+ RK+  +TQ ++      +QS I  +E+G   ++++ +  +A  L++P+
Sbjct: 9  VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64


>gi|317133712|ref|YP_004090316.1| helix-turn-helix domain protein [Ruminococcus albus 7]
 gi|315450870|gb|ADU24430.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 90

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  + LTQK++ +R+G AQ  IS+LE G +  +I  +  LA+ +   L
Sbjct: 37 ARNSSGLTQKQLSDRSGIAQGDISKLENGNANPSIRTLQRLANAMGKKL 85


>gi|260770117|ref|ZP_05879050.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972]
 gi|260615455|gb|EEX40641.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
 gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
          Length = 177

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 32/65 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +E  +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +  
Sbjct: 16 KEFAMIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75

Query: 77 LWKLL 81
             ++
Sbjct: 76 YVDIV 80


>gi|167648136|ref|YP_001685799.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350566|gb|ABZ73301.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 106

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  R +R    LT  +   R G ++S++SELE+G  T +I+ +   A   D P+  L
Sbjct: 1  MINNALRLVRVYHNLTPADASARLGISRSYLSELESGNKTASIEVLQKYAKAFDMPVSSL 60

Query: 81 L 81
          +
Sbjct: 61 M 61


>gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 183

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q+ +  + G   S IS +E+GK+  ++  +  +   +   L +  
Sbjct: 6  VGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKANPSVGALKRILDAVPIGLAEFF 65


>gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
 gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex
          HEL-45]
          Length = 205

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++RK  KLT   + + +G A S IS++E G  +  +D ++ LA  LD  + +L+
Sbjct: 7  LGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQLI 66


>gi|86143509|ref|ZP_01061894.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis
          MED217]
 gi|85829956|gb|EAQ48417.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis
          MED217]
          Length = 71

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +    N    +R++   TQ ++    G  +  I +LE GK      ++  ++  L   L+
Sbjct: 7  KKKIGNRIVKLREQKGWTQSDLARECGKDRQAIEKLENGKVNPTAYSLFEISKALKIELY 66

Query: 79 KLLK 82
          +LLK
Sbjct: 67 QLLK 70


>gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 103

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+   L+ +++  + G +Q  ++ +E G    +I+ +  + + L   L    
Sbjct: 9  GKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGNRKADIETLEKICYALGITLIDFF 67


>gi|298290472|ref|YP_003692411.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926983|gb|ADH87792.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 229

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 14  AILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            ++ ER +        R +R+E +LT  ++ +  G +   +S++E G  + ++  +  ++
Sbjct: 35  PLVNERTLEQALGQQVRAVRRELELTVSDLASAAGISVGMLSKIENGLISPSLATLQAIS 94

Query: 71  HTLDTPLWKLLK 82
             L+ P+  L  
Sbjct: 95  SALNVPISTLFT 106


>gi|260459627|ref|ZP_05807881.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|259034429|gb|EEW35686.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
          Length = 199

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +  ++ R +R+   LT  EI  + G +  W+S++E G ST ++ ++   A     P+
Sbjct: 17 DERVLASDIRALRRVRGLTLAEIALKLGRSVGWLSQVERGLSTPSVGDLRAFAELFGVPI 76


>gi|261819878|ref|YP_003257984.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261603891|gb|ACX86377.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 103

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 31/55 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           + R  R     +Q+E+  R+G  QS IS++E+G   + + ++I LA  LD  L+
Sbjct: 10 ESLREARARKGFSQRELSARSGVPQSHISKIESGGVDLRVSSLIALARVLDLELF 64


>gi|154502909|ref|ZP_02039969.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC
          29149]
 gi|153796448|gb|EDN78868.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC
          29149]
          Length = 118

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  LTQ+E+ + +  +   I+++E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKKKDLTQQELADLSHVSIKQIAKIEKGKINPSYLILKALAKVLPISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|78067667|ref|YP_370436.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968412|gb|ABB09792.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 104

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P  +      ++A L+E        R  R E  ++Q+ + +     +S + ++E G+  
Sbjct: 22 IPMERVSGRSDTEANLKE---VGKAIRVRRLELDISQETLAHLANIDRSHMGKIERGERN 78

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          + + N++ +A  L     +LL
Sbjct: 79 VTLLNLLKIARALSCRPSELL 99


>gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4]
          Length = 355

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+ A + Q+ +    G  +  I+  E G+   ++  ++ L   L  P+  +L
Sbjct: 3  LRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPIDVML 58


>gi|323485286|ref|ZP_08090635.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum
          WAL-14163]
 gi|323401322|gb|EGA93671.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum
          WAL-14163]
          Length = 141

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75
           I  NN +  R +  L+Q+ + N  G+    A+S IS++E+G + +    + I+A  L  
Sbjct: 10 KILGNNIKKYRDDKGLSQEALANLCGWNTDNARSTISKIESGTNDVPTSKLKIIAEKLGV 69

Query: 76 PLWKLL 81
           +  L+
Sbjct: 70 SVCDLM 75


>gi|297162420|gb|ADI12132.1| putative transcriptional regulator, XRE family protein
          [Streptomyces bingchenggensis BCW-1]
          Length = 196

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +      + +R E  LT +++ +    + S +S +E G+    +  +  +A  L  PL +
Sbjct: 5  LTLGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQKAPTVLVLARIADGLGVPLAE 64

Query: 80 LL 81
          L+
Sbjct: 65 LV 66


>gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 173

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++   +TP+  L
Sbjct: 1  MLNENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVSAL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|238020422|ref|ZP_04600848.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC
          51147]
 gi|237867402|gb|EEP68408.1| hypothetical protein GCWU000324_00303 [Kingella oralis ATCC
          51147]
          Length = 198

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPL 77
                N RK+A LTQ+E+    GF+ +  +S +E G++    D M+ ++   + PL
Sbjct: 5  LAQWVANARKQANLTQEELAEAIGFSGKGSVSAIENGRNKPTFDIMVKISEVCNYPL 61


>gi|237746706|ref|ZP_04577186.1| predicted protein [Oxalobacter formigenes HOxBLS]
 gi|229378057|gb|EEO28148.1| predicted protein [Oxalobacter formigenes HOxBLS]
          Length = 99

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  R    L+Q ++   +  + S++S +E  +  I +  +  + H L  P+  LL
Sbjct: 4  GNAIKTCRIRRGLSQTKLAELSECSVSYLSLIEHNQRDITVSTLQRICHALHVPMGILL 62


>gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 113

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           IL  R I  +  R +R++A  TQ+ +  + G +   I + E G + +N D +  +A  L
Sbjct: 3  PILNSREI-GHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQAL 61

Query: 74 DTPLWKLLK 82
            P+  L  
Sbjct: 62 SIPIQSLFT 70


>gi|332665060|ref|YP_004447848.1| helix-turn-helix domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333874|gb|AEE50975.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 174

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 10  HLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           H +  + R+R +      R  RKEA LTQ+E+  R+G  + +IS +E   + I +  +  
Sbjct: 100 HSTPDLNRDRGVPVGEVLRQARKEAGLTQEELAKRSGTTKHYISRIENHHADIEVGTLQR 159

Query: 69  LAHT-LDTPL 77
           +    L   L
Sbjct: 160 IVELGLGKQL 169


>gi|325475236|gb|EGC78421.1| DNA-binding protein [Treponema denticola F0402]
          Length = 104

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R IR + +++Q E+  R   + ++I+ +E  +  ++   +  +   L+T  ++L
Sbjct: 8  ILAKNIRRIRHKLEISQMELALRADVSIAFINAIENKQKWVSAATLSKITDALNTTPYEL 67

Query: 81 L 81
           
Sbjct: 68 F 68


>gi|298252278|ref|ZP_06976081.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
 gi|297546870|gb|EFH80738.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
          Length = 131

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R  R++  +T KE+  + G ++ ++ E+E G+   +   +  LA  L+  + 
Sbjct: 5  QELLGRVIRRERQDHNMTIKELGEKAGLSEIYVGEIERGQKYPSAKVLESLAGALELDVA 64

Query: 79 KLLK 82
          +LL+
Sbjct: 65 ELLE 68


>gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R  RK+  +TQ+E+      ++S IS  E G++  +I  +I LA      L +
Sbjct: 1  MAFHQMIRERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|257792397|ref|YP_003183003.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317490265|ref|ZP_07948753.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA]
 gi|325833618|ref|ZP_08166067.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257476294|gb|ACV56614.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316910759|gb|EFV32380.1| hypothetical protein HMPREF1023_02453 [Eggerthella sp. 1_3_56FAA]
 gi|325485542|gb|EGC88011.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 83

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R EA L+Q E+    G ++  IS +ETG         ++L   LD     L 
Sbjct: 23 NRLKAARAEAGLSQAELAGLVGVSRQTISSIETGLFNPTAKLALVLCIALDKKFEDLF 80


>gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342]
          Length = 189

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R+   ++  ++   +G ++  +S+LE+G S+  +D +  +A  L  P+  LL
Sbjct: 17 GSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSSPRVDTLDAIATALRLPVGDLL 75


>gi|194467240|ref|ZP_03073227.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454276|gb|EDX43173.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 212

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  R++ + TQ+++  R   ++  IS  E G+S  +I  ++ ++      L  LL
Sbjct: 3  FADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 193

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                  + I     R +RK   LT K++   TG +  ++S+LE   +  +I  + ++ 
Sbjct: 2  DDQKKRETQPIIGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRALNVIG 61

Query: 71 HTLDT 75
            L  
Sbjct: 62 KALGV 66


>gi|42525646|ref|NP_970744.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41815657|gb|AAS10625.1| DNA-binding protein [Treponema denticola ATCC 35405]
          Length = 104

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R IR + +++Q E+  R   + ++I+ +E  +  ++   +  +   L+T  ++L
Sbjct: 8  ILAKNIRRIRHKLEISQMELALRADVSIAFINAIENKQKWVSAATLSKITDALNTTPYEL 67

Query: 81 L 81
           
Sbjct: 68 F 68


>gi|148545002|ref|YP_001272372.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM
          20016]
 gi|184154336|ref|YP_001842677.1| transcription regulator [Lactobacillus reuteri JCM 1112]
 gi|227364146|ref|ZP_03848243.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM2-3]
 gi|325683349|ref|ZP_08162865.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM4-1A]
 gi|148532036|gb|ABQ84035.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM
          20016]
 gi|183225680|dbj|BAG26197.1| transcription regulator [Lactobacillus reuteri JCM 1112]
 gi|227070785|gb|EEI09111.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM2-3]
 gi|324977699|gb|EGC14650.1| XRE family transcriptional regulator [Lactobacillus reuteri
          MM4-1A]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  R++ + TQ+++  R   ++  IS  E G+S  +I  ++ ++      L  LL
Sbjct: 3  FADKMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|47570199|ref|ZP_00240853.1| cI-like repressor [Bacillus cereus G9241]
 gi|228983330|ref|ZP_04143544.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|229153853|ref|ZP_04281984.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342]
 gi|47553143|gb|EAL11540.1| cI-like repressor [Bacillus cereus G9241]
 gi|228629657|gb|EEK86353.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342]
 gi|228776444|gb|EEM24796.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 67

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  + + D ++ +A  L   +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKISI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 DELM 65


>gi|318061628|ref|ZP_07980349.1| hypothetical protein SSA3_27058 [Streptomyces sp. SA3_actG]
          Length = 77

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
             +L +R    +  R  R EA +TQ+ +  RTG  +  I   E+G  +  +D+++++A 
Sbjct: 7  PARVLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIAR 66

Query: 72 TLDTPLWKLL 81
           L  PL  L+
Sbjct: 67 ALGRPLADLV 76


>gi|298717105|ref|YP_003729747.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361294|gb|ADI78075.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
          vagans C9-1]
          Length = 182

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N     R+ + L+  E+  R G A+S +S+LE G     I+ +  L  TL+ P  +L
Sbjct: 7  IIANALVRERQRSGLSLAEVARRAGIAKSTLSQLEAGNGNPGIETLWSLCVTLNIPFSRL 66

Query: 81 LKP 83
          L+P
Sbjct: 67 LEP 69


>gi|291521518|emb|CBK79811.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 118

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 216

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +RK+ ++T  E+  R   + S ISE+E G+ T +++ ++ +A  L T +  L
Sbjct: 1  MLGERIRTLRKKMRMTATELARRVKTSPSHISEIERGEKTPSLNLLVKIAKELQTSIDYL 60


>gi|254294734|ref|YP_003060757.1| XRE family transcriptional regulator [Hirschia baltica ATCC
          49814]
 gi|254043265|gb|ACT60060.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 70

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N+ + +RK  KLTQ+E+ +  G  +  I  +E GK + +++    +A TL+  L  + 
Sbjct: 7  FSNHIQELRKAKKLTQQELADAIGMTRQTIVAIEKGKYSPSLEAAFRIAQTLEQSLTDVF 66


>gi|302873056|ref|YP_003841689.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
 gi|307688788|ref|ZP_07631234.1| transcriptional regulator, XRE family protein [Clostridium
          cellulovorans 743B]
 gi|302575913|gb|ADL49925.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
          Length = 67

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E  +TQ+E+ +     +  IS +E+GK    +   I +   L   L  L 
Sbjct: 4  NKIKTARVEKGITQEELADMIKVTRQTISLIESGKYNPTLKLCISICLALGKTLNDLF 61


>gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
 gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus
          hominis SK119]
          Length = 137

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+++  + G ++  IS  E   S  ++  ++ +    +  L +L+K
Sbjct: 6  GHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISNPDLKTILEITKLFNVSLNQLIK 65


>gi|282600636|ref|ZP_05979286.2| transcriptional regulator, Cro/CI family [Subdoligranulum
          variabile DSM 15176]
 gi|282571663|gb|EFB77198.1| transcriptional regulator, Cro/CI family [Subdoligranulum
          variabile DSM 15176]
          Length = 120

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 11 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 70

Query: 82 KP 83
           P
Sbjct: 71 NP 72


>gi|166033445|ref|ZP_02236274.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC
          27755]
 gi|225374572|ref|ZP_03751793.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans
          DSM 16841]
 gi|166026630|gb|EDR45387.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC
          27755]
 gi|225213632|gb|EEG95986.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans
          DSM 16841]
 gi|291524361|emb|CBK89948.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
          Length = 118

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|139438183|ref|ZP_01771736.1| Hypothetical protein COLAER_00724 [Collinsella aerofaciens ATCC
          25986]
 gi|133776380|gb|EBA40200.1| Hypothetical protein COLAER_00724 [Collinsella aerofaciens ATCC
          25986]
          Length = 72

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 29/67 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R   I        R++  +++ +    TG ++ ++  +E G +   +  +  +A  L  
Sbjct: 3  ERAEQILGRRVEETRRDLGISKVDFCVATGISRPYLDRIEGGTANFTLKVLFKIAPALGM 62

Query: 76 PLWKLLK 82
           + +LL+
Sbjct: 63 TVSELLE 69


>gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila
          L48]
 gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          entomophila L48]
          Length = 104

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R       R  RK A LTQ ++  RTGF    IS  ETG  T +I+ ++  A  L    
Sbjct: 3  RTGLGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEALGVKP 61


>gi|325298403|ref|YP_004258320.1| helix-turn-helix domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317956|gb|ADY35847.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 120

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +    R+ RK   +TQKE+  R G  +S+IS LE G++ + + + I +A  L   L
Sbjct: 58  YGEVLRDRRKALGITQKELAERIGRDRSYISRLEKGETDLQLSSFIRIATALGIML 113


>gi|317475652|ref|ZP_07934913.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|316908222|gb|EFV29915.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
          Length = 104

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 12 SDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          S     ER +   + +  R  RKE KLTQK++  + G  QS+I+ +E G++ I + +   
Sbjct: 30 SRESFNERTMAWYYGDILRERRKELKLTQKQLAQKIGKEQSYIARVEKGEADIQLSSFFR 89

Query: 69 LAHTLDTP 76
          +A  L   
Sbjct: 90 IARALGIE 97


>gi|309776192|ref|ZP_07671183.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916143|gb|EFP61892.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 118

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|303326019|ref|ZP_07356462.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
 gi|302863935|gb|EFL86866.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
          Length = 93

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            RK A LTQ E+ + +G ++ ++S LE G    ++  ++ +A  L     +L+
Sbjct: 17 EARKAADLTQVELADFSGLSKPYVSGLERGNINASVYALMRVAEVLKVAPSELM 70


>gi|257439384|ref|ZP_05615139.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257198259|gb|EEU96543.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 90

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            RK A LTQK++  + G AQ+ IS  E G S  +++ +  +A  +   L
Sbjct: 36 ESRKAAGLTQKQLAEKMGTAQANISRFENGNSNPSLEFLQKMAACMGKTL 85


>gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82]
 gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82]
          Length = 170

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +  +N + +RK A ++Q+++   T  ++  +S+ E+G+S  ++     +A      L 
Sbjct: 25 KNMLSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGVALE 84

Query: 79 KLL 81
           +L
Sbjct: 85 DML 87


>gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
          Length = 354

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +  RK+ KLTQ ++  R   ++S IS  E G    +I  +I LA+ ++  +  L
Sbjct: 5  VFANNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNL 64

Query: 81 L 81
           
Sbjct: 65 F 65


>gi|160916257|ref|ZP_02078464.1| hypothetical protein EUBDOL_02284 [Eubacterium dolichum DSM 3991]
 gi|158431981|gb|EDP10270.1| hypothetical protein EUBDOL_02284 [Eubacterium dolichum DSM 3991]
          Length = 72

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E++I  N+ + +R E  L+Q+ +    G +++ IS +ETG+        +IL   LD   
Sbjct: 5  EKLILKNHLKEVRSEKGLSQERLSQIVGVSRNTISSIETGQFNPTAKLALILCIALDKKF 64

Query: 78 WKLL 81
           +L 
Sbjct: 65 EELF 68


>gi|154498504|ref|ZP_02036882.1| hypothetical protein BACCAP_02493 [Bacteroides capillosus ATCC
          29799]
 gi|150272572|gb|EDM99757.1| hypothetical protein BACCAP_02493 [Bacteroides capillosus ATCC
          29799]
          Length = 76

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGK-STINIDNMIILAHTL 73
           ER I         RK+A LTQ+ +  R G + +++ ++E TG    ++++ +  +A  L
Sbjct: 6  PERYITLGLKIAYYRKKAGLTQEVLAERIGKSVNFVGQVEGTGTIRGVSLETLFKIAQVL 65

Query: 74 DTPLWKLLK 82
            P  KLL+
Sbjct: 66 KIPPSKLLE 74


>gi|13471336|ref|NP_102905.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022081|dbj|BAB48691.1| probable transcriptional regulator [Mesorhizobium loti
          MAFF303099]
          Length = 180

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  ++ R +R+   LT  EI  +   +  W+S++E G ST ++ ++   A     P+
Sbjct: 1  MLASDIRALRRARGLTLAEIALKLDRSVGWVSQVERGLSTPSLSDLRAFAELFGVPI 57


>gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 247

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F NN +  R +  + QKE     G   S ++  E        + +I +A  L  P+ +
Sbjct: 1  MSFGNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNHREPKTEILIKIADALLIPIDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 73

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  + IRKE  L+Q+ + +  G +++ IS +ETG+        +IL   LD     
Sbjct: 5  LILHNRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAKLALILCIALDCQFEN 64

Query: 80 LL 81
          + 
Sbjct: 65 MF 66


>gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 115

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N+RKEA LTQ ++  + G +Q   +  E G      DN++ L+  L   +  LL
Sbjct: 3  FSERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDYLL 62


>gi|284044518|ref|YP_003394858.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283948739|gb|ADB51483.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 94

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R+ F    R +R    ++  E+   T   + ++  +E  +    +  M+ +A  L  PL
Sbjct: 12 DRLAFGRAVRELRGRRGMSLSELGRATLVHEGYLGAVERAEVEPTLRTMVRVAGGLGVPL 71

Query: 78 WKLLK 82
            L++
Sbjct: 72 SVLVE 76


>gi|255066370|ref|ZP_05318225.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256]
 gi|255049250|gb|EET44714.1| putative helix-turn-helix protein [Neisseria sicca ATCC 29256]
          Length = 153

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 2   PRRKR--DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           PRRK   D      A           F ++R +   TQ E+    G  Q ++S +E  K 
Sbjct: 59  PRRKAAMDRAAAKIADKIALKAGGETFVSLRMKKGFTQSELAAAAGLRQPYLSRIENSKQ 118

Query: 60  TINIDNMIILAHTLDTPLWKL 80
           +++ + +  LA+ L     ++
Sbjct: 119 SLHNETVQKLANALGVSPLEV 139


>gi|225570864|ref|ZP_03779887.1| hypothetical protein CLOHYLEM_06968 [Clostridium hylemonae DSM
          15053]
 gi|225160326|gb|EEG72945.1| hypothetical protein CLOHYLEM_06968 [Clostridium hylemonae DSM
          15053]
          Length = 183

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             MI   N R +R+E KL+ +E+   +  ++S ++++E G++   I  +  +++ +  P
Sbjct: 3  PMNMIVAKNIRRLREENKLSMEELSKLSSVSKSMLAQIERGEANPTISTLWKISNGMKVP 62

Query: 77 LWKL-LKP 83
             L ++P
Sbjct: 63 FDHLTVRP 70


>gi|168183417|ref|ZP_02618081.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|182673458|gb|EDT85419.1| putative DNA-binding protein [Clostridium botulinum Bf]
          Length = 140

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F   F+NIRKE  L+Q+++   +  + + IS +E+G+    + + +  +A  L     +L
Sbjct: 3  FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 79

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R  A  +TQ E+  + G  +  I  +E G+ + +++    +A     PL  + +
Sbjct: 12 IRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRYSPSLEVAFRIAAAFGVPLEHVFQ 69


>gi|29833583|ref|NP_828217.1| transcriptional regulatory protein [Streptomyces avermitilis
          MA-4680]
 gi|29610707|dbj|BAC74752.1| putative transcriptional regulatory protein [Streptomyces
          avermitilis MA-4680]
          Length = 201

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  + ++E  ++  +I  ++ +   L   +  
Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSVTT 79

Query: 80 LL 81
          LL
Sbjct: 80 LL 81


>gi|290890363|ref|ZP_06553439.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429]
 gi|290479981|gb|EFD88629.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429]
          Length = 67

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R +  L+Q+++  +   ++  IS+ E+G++T +++N+I L+  LD  L  L+
Sbjct: 4  FPEQLKKYRNKKNLSQEDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLV 63


>gi|78187660|ref|YP_375703.1| hypothetical protein Plut_1806 [Chlorobium luteolum DSM 273]
 gi|78167562|gb|ABB24660.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 370

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +R   + +QKE+    G +   I  LE  KS   + ++  +A  LD PL  
Sbjct: 4  QLLSANVRRLRSMKRFSQKELAEAAGMSLPAIKNLELQKSEPRMSSLQAIARALDVPLQD 63

Query: 80 LLKP 83
            +P
Sbjct: 64 FFRP 67


>gi|56696936|ref|YP_167298.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56678673|gb|AAV95339.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T ++  ++ G A+S +S++E G+ +   D +  LA  L   + +L 
Sbjct: 27 LGARVRELRKARDWTLEQAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQISVPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|330879391|gb|EGH13540.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. morsprunorum str. M302280PT]
          Length = 95

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    +  R    LTQ++  + +  +++++S LE G     +D +  LA  ++    
Sbjct: 4  KQAFGQALKQFRLAKGLTQEDFSSIS--SRTYLSTLERGLKCPTLDKLEGLASVMEVHPL 61

Query: 79 KLL 81
           +L
Sbjct: 62 SVL 64


>gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641]
 gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641]
          Length = 197

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ RKE  L+Q E+      ++  IS  E G +  +I N+++L+   +  L K
Sbjct: 1  MQVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|302205618|gb|ADL09960.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis
          C231]
 gi|308275853|gb|ADO25752.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis
          I19]
          Length = 158

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78
            R +RK   L+Q  +   +  +++ IS LE  +++        +  +  LA  L  P  
Sbjct: 31 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 90

Query: 79 KLL 81
           LL
Sbjct: 91 VLL 93


>gi|260899786|ref|ZP_05908181.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          AQ4037]
 gi|308110450|gb|EFO47990.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus
          AQ4037]
          Length = 518

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +ID
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSID 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P W L
Sbjct: 64 MLEVVAEVFQKDPAWFL 80


>gi|257090409|ref|ZP_05584770.1| predicted protein [Enterococcus faecalis CH188]
 gi|256999221|gb|EEU85741.1| predicted protein [Enterococcus faecalis CH188]
          Length = 75

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NF+  R++ KLTQKE+  +   ++ +I +LE+G S+ +    +I+A     PL  L 
Sbjct: 4  NFKMEREKLKLTQKELAEKLDLSEVYIRKLESGASSPSTKKAVIIAEFFGKPLDYLF 60


>gi|257063361|ref|YP_003143033.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256791014|gb|ACV21684.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 256

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R  F    + +RK A +TQ E+ +R G     +S+ E G++    ++   L   L+ 
Sbjct: 2  PVDRAGFGKTIQALRKHASVTQGEVASRVGVTDKAVSKWERGEALPAAESFAALGKALNV 61

Query: 76 PLWKLLK 82
          P   L +
Sbjct: 62 PALVLFE 68


>gi|324009974|gb|EGB79193.1| helix-turn-helix protein [Escherichia coli MS 57-2]
          Length = 116

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79


>gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
 gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79


>gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli
          TA280]
 gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli
          TA280]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79


>gi|317054864|ref|YP_004103331.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447133|gb|ADU20697.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 211

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +D   +         R  R    +TQK+    TG +QS++S +E G+ +I    +I L  
Sbjct: 3  ADKTQQYLQQVGERLRGARLLMGITQKQAAQATGMSQSFLSLVERGRKSICTAQIISLIR 62

Query: 72 TLDTP 76
              P
Sbjct: 63 YYKVP 67


>gi|302379450|ref|ZP_07267937.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|303233840|ref|ZP_07320493.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
 gi|302312795|gb|EFK94789.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|302495035|gb|EFL54788.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
          Length = 98

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            I  +  I      + R    LTQK++  +TG  QS IS+LE G    +I+ +  LA  
Sbjct: 22 KNIQPDMDII-RALVSARTSQNLTQKQLSEKTGIDQSDISKLENGTRNPSINLLKRLADG 80

Query: 73 LDTPL 77
          L   L
Sbjct: 81 LGMDL 85


>gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli
          B088]
 gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli
          B088]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79


>gi|229019581|ref|ZP_04176397.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
 gi|229025821|ref|ZP_04182220.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228735529|gb|EEL86125.1| Transcriptional regulator, MerR [Bacillus cereus AH1272]
 gi|228741747|gb|EEL91931.1| Transcriptional regulator, MerR [Bacillus cereus AH1273]
          Length = 181

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 4  GSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLDTISNFLNVPLPYLL 62


>gi|220905049|ref|YP_002480361.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219869348|gb|ACL49683.1| transcriptional regulator, XRE family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 82

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 36/59 (61%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++R  + L+Q++  +  G ++ +I++LETG+   +++ +I++A ++     +L+
Sbjct: 12 AKTVRSLRTRSGLSQEQFADFAGLSRVYIAQLETGERGASLNALILIARSVRMTGSELV 70


>gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019]
 gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79


>gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A]
 gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A]
 gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          55989]
 gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli
          UMN026]
 gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia
          coli H591]
 gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A]
 gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A]
 gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          55989]
 gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          UMN026]
 gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1]
 gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          WV_060327]
 gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          O157:H- str. 493-89]
 gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          O157:H- str. H 2687]
 gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli
          O157:H7 str. LSU-61]
 gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14]
 gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227]
 gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia
          coli H591]
          Length = 251

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 24 KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 79


>gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis
          ATCC 700641]
          Length = 116

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N+RK+A LTQ ++  + G +Q   +  E G      DN++ +A  L+  +  L+
Sbjct: 3  FSERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYLV 62


>gi|262282933|ref|ZP_06060700.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261185|gb|EEY79884.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA]
          Length = 96

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D   +ER +  +N +++RK   LTQ E     G +++ +S  E G S I+ + +  +   
Sbjct: 6  DIKSKERAMVGDNIKSLRKTNDLTQPEFARIVGISRNSLSRYENGTSPISTELIDTICQK 65

Query: 73 LDTPLW------KLLKP 83
           +          K+L P
Sbjct: 66 FNVSYVAIVGEEKMLNP 82


>gi|302518782|ref|ZP_07271124.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302427677|gb|EFK99492.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 77

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
             +L +R    +  R  R EA +TQ+ +  RTG  +  I   E+G  +  +D+++++AH
Sbjct: 7  PARVLDQRRAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIAH 66

Query: 72 TLDTPLWKLL 81
           L   L  L+
Sbjct: 67 ALGRSLADLI 76


>gi|302518777|ref|ZP_07271119.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|318061623|ref|ZP_07980344.1| putative DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318075837|ref|ZP_07983169.1| putative DNA-binding protein [Streptomyces sp. SA3_actF]
 gi|302427672|gb|EFK99487.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 280

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             R       R +R EA L  K++  R G+ +S +S LETGK T  +D++   A   D
Sbjct: 7  QTGREALGARLRELRTEAGLQGKDLAARLGWQRSKVSRLETGKQTPTVDDLATWAQATD 65


>gi|238760729|ref|ZP_04621847.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC
          35236]
 gi|238701055|gb|EEP93654.1| hypothetical protein yaldo0001_36380 [Yersinia aldovae ATCC
          35236]
 gi|318604154|emb|CBY25652.1| hypotethical transcriptional regulator [Yersinia enterocolitica
          subsp. palearctica Y11]
 gi|318605347|emb|CBY26845.1| hypothetical protein Y11_25291 [Yersinia enterocolitica subsp.
          palearctica Y11]
          Length = 105

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR    + Q E+ ++   ++S++SELE+GK T++ D +   ++  D P+  L
Sbjct: 1  MINRALKTIRLFHNIKQSELADKLCISKSYLSELESGKKTVSFDILEKYSNNFDIPVSSL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|329116195|ref|ZP_08244912.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326906600|gb|EGE53514.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 128

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF      +RKE   +Q E+  +   ++  IS+ E G+ T ++  +  +         
Sbjct: 2  KLIFSQQLVKLRKEKHFSQDELAEKLFISRQAISKWERGEVTPDLAKIEQIGEVFGVTTE 61

Query: 79 KLL 81
           LL
Sbjct: 62 FLL 64


>gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor
           [Sinorhizobium fredii NGR234]
 gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor
           [Sinorhizobium fredii NGR234]
          Length = 220

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R++R    L+Q+E+  R G   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 44  GNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 102


>gi|161521368|ref|YP_001584795.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189352465|ref|YP_001948092.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|327198043|ref|YP_004306412.1| gp45 [Burkholderia phage KS5]
 gi|160345418|gb|ABX18503.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
 gi|189336487|dbj|BAG45556.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|310657177|gb|ADP02292.1| gp45 [Burkholderia phage KS5]
          Length = 107

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R+    +Q  + N  G + S++SE+E+GK    ++ +   +   + PL  +
Sbjct: 1  MLGRALKAMRQFHNQSQGALANTLGISNSYLSEIESGKKEPTLEILNRYSTVFNVPLSSI 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|160879107|ref|YP_001558075.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160427773|gb|ABX41336.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 63

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+++ +  G ++  IS +E G     I+  I +   L   L +L 
Sbjct: 5  KLKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELF 61


>gi|91792424|ref|YP_562075.1| transciptional regulator [Shewanella denitrificans OS217]
 gi|91714426|gb|ABE54352.1| transcriptional regulator [Shewanella denitrificans OS217]
          Length = 195

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F+ +FR    E   + + + +R+G ++S IS++E+G+ +  I  +  LA  +   L   
Sbjct: 18 LFIRSFRQANHE---SLQSLADRSGVSRSMISQIESGQKSPTIMILAKLADAMSISLEDF 74

Query: 81 LK 82
          +K
Sbjct: 75 IK 76


>gi|119716552|ref|YP_923517.1| helix-turn-helix domain-containing protein [Nocardioides sp.
          JS614]
 gi|119537213|gb|ABL81830.1| helix-turn-helix domain protein [Nocardioides sp. JS614]
          Length = 89

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R++R +  LT +E+      +  +ISE+E G+   + + +  L   LD PL 
Sbjct: 5  RRLLGDVLRDLRMQRGLTLREVSAEARVSLGYISEIERGQKEASSELLASLCAALDVPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 DVLR 68


>gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato K40]
          Length = 129

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RK     Q ++    G  +  IS  E G  T N+D+++ L   L     +LL
Sbjct: 20 GVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 78


>gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 70

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+       + +R+E  +T +E+  + G +QS+I  +E G     +  +I +A  L+  L
Sbjct: 3  EKPTMGERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDL 62

Query: 78 WKLLK 82
            L++
Sbjct: 63 AALVE 67


>gi|291530986|emb|CBK96571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
 gi|291551031|emb|CBL27293.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
 gi|295104178|emb|CBL01722.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 118

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|3360504|gb|AAC27928.1| thermosensitive mutant immunity repressor [Bacillus phage phi105]
          Length = 147

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + IRKE KL Q ++  +   ++S+++++E  +   ++  +  +A  L   +  
Sbjct: 4  MTVGQRIKAIRKERKLIQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 63

Query: 80 LL 81
          ++
Sbjct: 64 IV 65


>gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 85

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N  R  R    +TQ E+ +++G + + I  LE+GK T+++  +  +   LD    
Sbjct: 11 RNAIGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFAICKVLDVDPG 70

Query: 79 KLL 81
           LL
Sbjct: 71 VLL 73


>gi|288905859|ref|YP_003431081.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|288732585|emb|CBI14157.1| putative transcriptional regulator [Streptococcus gallolyticus
          UCN34]
          Length = 136

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF+ N   +RK  +LTQ+++  + G ++  I++ ET +    I N++ LA   +  + 
Sbjct: 4  QEIFMENLTWLRKINRLTQEQLALKVGVSRESIAKWETKRVEPAIKNLVKLAEVFNVGVD 63

Query: 79 KLL 81
          KLL
Sbjct: 64 KLL 66


>gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44]
 gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44]
          Length = 262

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F      +RKE  L+Q+ +  +   ++  IS+ E G+     + ++++ +  +  +  
Sbjct: 1  MAFGEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQGFPETEKLLMIGNIFEVSVDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|77919689|ref|YP_357504.1| transcriptional regulator Cro/CI family protein [Pelobacter
          carbinolicus DSM 2380]
 gi|77545772|gb|ABA89334.1| transcriptional regulator, XRE family [Pelobacter carbinolicus
          DSM 2380]
          Length = 188

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER +      + +R    LTQ+E+ NR    + +IS+LE   +  +I  +  +       
Sbjct: 2  ERNLNIGEKLKRLRMINSLTQEELGNRADLTKGYISQLENDTACPSIATLKDILDVFGVS 61

Query: 77 LWKLLK 82
          + +   
Sbjct: 62 MQEFFT 67


>gi|71737053|ref|YP_274987.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71557606|gb|AAZ36817.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 78

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    RN+R    LTQ++    +  ++++IS LE G   + ++ +  LA  ++    
Sbjct: 4  KEAFAEALRNMRLRKGLTQEDFGLVS--SRTYISSLERGMKGVTLEKVTQLADRMEVHPL 61

Query: 79 KLL 81
           LL
Sbjct: 62 SLL 64


>gi|48478177|ref|YP_023883.1| transcriptional regulatory protein [Picrophilus torridus DSM
          9790]
 gi|48430825|gb|AAT43690.1| transcriptional regulatory protein [Picrophilus torridus DSM
          9790]
          Length = 192

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             R +RK   ++QKE+ + +G +QS+I+ LE G      D +  +   L+
Sbjct: 6  EELRKMRKSLGISQKELASISGVSQSYIARLEKGDINPTYDKIKKIYEYLN 56


>gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM
          2581]
          Length = 195

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    ++Q+E+  R G   S +S +E GK + ++ ++  +   +   +    
Sbjct: 17 VGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLKKILDAIPMSVGDFF 76

Query: 82 K 82
           
Sbjct: 77 T 77


>gi|239978241|ref|ZP_04700765.1| transcriptional regulatory protein [Streptomyces albus J1074]
          Length = 190

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R+ R E   T   +  R+G +++ + ++E  ++  +I  ++ +   L   +  LL
Sbjct: 11 LARNVRHWRAERGFTLDALATRSGVSRNMLIQIEQARTNPSIATVVKIGDALGVSVTSLL 70


>gi|222087768|ref|YP_002546305.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725216|gb|ACM28372.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 227

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 5   KRDEPHLSDAILRE-------------RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWI 51
           +R   H + AIL++              M   +  R  RK+  +T  ++ + TG +   +
Sbjct: 11  RRSGAHDAKAILKQDPHALRDAKENNLEMAIGHEVRAYRKKLGITGADLASATGISLGML 70

Query: 52  SELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           S++E G ++ ++  +  LA  L  P+    +
Sbjct: 71  SKIENGNTSPSLTTLQSLARALGVPVTAFFR 101


>gi|241554132|ref|YP_002979345.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240863438|gb|ACS61100.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 283

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
             H   + +   +      R  R     +Q ++   TG +Q  IS +E+G+ST    N+
Sbjct: 2  SSTHSPSSAVPNEL--GIQLRAWRDTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNL 59

Query: 67 IILAHTLDTPLWK 79
          + LA  LD PL +
Sbjct: 60 LHLADALDVPLRE 72


>gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes KPA171202]
 gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes KPA171202]
 gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Propionibacterium acnes 266]
          Length = 548

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                R+ RK+  +TQ ++      +QS I  +E+G   ++++ +  +A  L++P+
Sbjct: 49  VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 104


>gi|75910258|ref|YP_324554.1| molybdate metabolism transcriptional regulator [Anabaena
          variabilis ATCC 29413]
 gi|75703983|gb|ABA23659.1| transcriptional regulator of molybdate metabolism, XRE family
          [Anabaena variabilis ATCC 29413]
          Length = 377

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + IR    ++Q+++ N     +  IS +E+G+   ++   + +A  L   +  L 
Sbjct: 9  NNLKAIRTRLGMSQQDLANIASVTRQTISGVESGQYAPSVAIALRIAKALGCQVEDLF 66


>gi|85704021|ref|ZP_01035124.1| DNA-binding protein, putative [Roseovarius sp. 217]
 gi|85671341|gb|EAQ26199.1| DNA-binding protein, putative [Roseovarius sp. 217]
          Length = 190

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +RK   LT   +    G +  W+S++E   S  +I ++  +A  L  P+  L 
Sbjct: 12 LGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSLLF 71


>gi|307824968|ref|ZP_07655190.1| helix-turn-helix domain protein [Methylobacter tundripaludum
          SV96]
 gi|307734015|gb|EFO04870.1| helix-turn-helix domain protein [Methylobacter tundripaludum
          SV96]
          Length = 92

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R+ F    +N RK  +LTQ++    +  +++++S LE G+ +  +D +  LA T+  
Sbjct: 2  RVAFAKALKNARKSRELTQEDFSGVS--SRTYLSSLERGQKSPTLDKLQTLAQTIGI 56


>gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 294

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N ++ RK   ++Q+E+  +    +  +S+ E G S  + D +I +A+ LD  + +L
Sbjct: 1  MINENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSIPDADVLIEMANLLDVSVSQL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 118

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I       +RKE KLTQ++I    G ++  IS+ E G    + +N+  LA   + P+  L
Sbjct: 3  IIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
          EF01-2]
 gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae
          EF01-2]
          Length = 208

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R    LT  ++  + G ++  +S++ETG +   +D +  +A TL   +  
Sbjct: 22 ESVGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMSA 81

Query: 80 LL 81
          L 
Sbjct: 82 LF 83


>gi|120401475|ref|YP_951304.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119954293|gb|ABM11298.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 180

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+E  +T  ++   TG  +S++S++E G+S  +I   + ++  L+  + +L 
Sbjct: 5  LRAVRQERGMTLDDLAADTGLTKSYLSKVERGQSVPSIAAALKISRALEVDVAQLF 60


>gi|291545509|emb|CBL18617.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 110

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 29/56 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  +  + +R     TQ+++ ++ G ++   + +E+G +++ +D +  +A  L  
Sbjct: 3  EMLGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGV 58


>gi|229003088|ref|ZP_04160940.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4]
 gi|228758171|gb|EEM07364.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4]
          Length = 67

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G  T + D ++ +A TL+  +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRTPSQDFVVEVAKTLNISI 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 DELM 65


>gi|229815595|ref|ZP_04445922.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM
          13280]
 gi|229808825|gb|EEP44600.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM
          13280]
          Length = 312

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N   +R    +TQ+ +    G  +  +S+ E G ST ++D ++ L    +  L +
Sbjct: 1  MSFRDNLLYLRDSRNMTQEHLAMLLGVTRQAVSKWEAGASTPDMDKLVRLCEIFEVDLDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIR 63


>gi|187780140|ref|ZP_02996613.1| hypothetical protein CLOSPO_03736 [Clostridium sporogenes ATCC
          15579]
 gi|187773765|gb|EDU37567.1| hypothetical protein CLOSPO_03736 [Clostridium sporogenes ATCC
          15579]
          Length = 177

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK+  LT KE+   T  +  +IS LE   ++ ++ N+  +   L   L +
Sbjct: 1  MQLGEKIKYYRKKKDLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60

Query: 80 LLK 82
          +LK
Sbjct: 61 ILK 63


>gi|284043470|ref|YP_003393810.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947691|gb|ADB50435.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 93

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRR +        +  E +      R IR    LTQ+ +   +   ++++  +E G+  
Sbjct: 1  MPRRTQPAR---PPLGPEYVTLGRAVREIRARRSLTQEGLGRESALHRNYVGAIERGEIN 57

Query: 61 INIDNMIILAHTLDTPLWKLL 81
               +  LA  L+  L +L 
Sbjct: 58 PTFRILRKLAAGLNVELSELF 78


>gi|228984217|ref|ZP_04144399.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228775504|gb|EEM23888.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 124

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLSEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501]
 gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166]
          Length = 182

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLSGIPMSLVEFF 62

Query: 82 KP 83
           P
Sbjct: 63 SP 64


>gi|317132632|ref|YP_004091946.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315470611|gb|ADU27215.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 74

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N    RKE  L+Q ++ +    +++ +S +E     +++D +  +A  L+  + KL 
Sbjct: 12 LGLNIAYYRKERGLSQMQLADAIDISRTHMSRIENNDCAVSLDVIFSIADALNIAVEKLF 71

Query: 82 K 82
          +
Sbjct: 72 E 72


>gi|262370945|ref|ZP_06064269.1| RtrR protein [Acinetobacter johnsonii SH046]
 gi|262314307|gb|EEY95350.1| RtrR protein [Acinetobacter johnsonii SH046]
          Length = 68

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 26/46 (56%)

Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          TQ+ +  + G  +S+I  +E G+  + ++ +  +A  L+  + +LL
Sbjct: 22 TQEALALQCGIDRSYIGRIERGEVNLTVEKLYEIATALEVDMKELL 67


>gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 169

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|228910198|ref|ZP_04074017.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
 gi|228849481|gb|EEM94316.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
          Length = 194

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R IR+   +T  +I   TG ++ ++S++E  K++ +I  +  +++ L+ PL  LL
Sbjct: 17 GSAIREIRQRRGITIAQICKGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPYLL 75


>gi|257066099|ref|YP_003152355.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|325846472|ref|ZP_08169387.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|256797979|gb|ACV28634.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|325481230|gb|EGC84271.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 68

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++  N+ + +RKE   +Q+++ +  G +++ IS +ETG+        +IL   L+   
Sbjct: 3  DKLVLKNHLKEVRKEKGYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|298491474|ref|YP_003721651.1| XRE family transcriptional regulator ['Nostoc azollae' 0708]
 gi|298233392|gb|ADI64528.1| transcriptional regulator, XRE family ['Nostoc azollae' 0708]
          Length = 529

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           ++KR        I     +        RK   L+Q+E+   TG +QSWI ++E+G+    
Sbjct: 456 KKKRRAIRSKKIIKSTDDLLAEQVIQARKSIDLSQRELAKLTGKSQSWIRDVESGRLKPK 515

Query: 63  IDNMIILAHTLDT 75
           +++ I+L   L+ 
Sbjct: 516 LEDQILLRKVLNI 528


>gi|224542817|ref|ZP_03683356.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524261|gb|EEF93366.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM
          15897]
          Length = 177

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++RK+   T + +  +TG  +S++S++E G S  +I   + LAH     + +L 
Sbjct: 6  AARLRSLRKKYGWTIESLALQTGLTKSYLSKVERGLSVPSIAVALKLAHAFKIDVEQLF 64


>gi|218510320|ref|ZP_03508198.1| transcriptional regulator [Rhizobium etli Brasil 5]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R IR     +   +    G +++ + ++ETGKS+  +  +  +A  L  P   L+
Sbjct: 25 GQNLRRIRTRRGYSLDRLAKIAGVSRAMLGQIETGKSSPTLSILSKIAVALGIPCAALI 83


>gi|330807428|ref|YP_004351890.1| transcription factor, Cro/Ci family [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327375536|gb|AEA66886.1| Putative transcription factor, Cro/Ci family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 81

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   + R  R + +L+Q+ + +  G  +S + ++E G+  +   N++ +A  +      
Sbjct: 15 QLLGASIRARRLDMRLSQEALADLAGVDRSHMGKIERGERNVTFLNILRIAMAMQCKPSD 74

Query: 80 LLK 82
          LL 
Sbjct: 75 LLT 77


>gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 212

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   ++Q+E+  + G ++  +S+ E+ +ST +++ +II++         +L
Sbjct: 3  LAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQSTPDVEKIIIMSDYFGVTTDYIL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|303326045|ref|ZP_07356488.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
 gi|302863961|gb|EFL86892.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
          Length = 97

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 33/70 (47%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + I   +         +R++A L+Q ++    G ++ +IS +E G    ++  M+ +A  
Sbjct: 2  EKIPTLQWAVAAVIHRLRRKAGLSQGQLAGLAGLSEDYISGMERGIQCGSLTAMLHIAAA 61

Query: 73 LDTPLWKLLK 82
          L     +L++
Sbjct: 62 LRMETAELVR 71


>gi|299770452|ref|YP_003732478.1| transcriptional regulator [Acinetobacter sp. DR1]
 gi|298700540|gb|ADI91105.1| transcriptional regulator [Acinetobacter sp. DR1]
          Length = 197

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R     T   +  R   ++S IS +E G+++     +  LA+ L  PL +L 
Sbjct: 9  AQQVRELRLARGYTLDILATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67


>gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis
          XB6B4]
          Length = 393

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R +  L Q E   + G +   +S+ E G+S  +I+N+ +++  LD  +  
Sbjct: 16 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 75

Query: 80 LL 81
          L+
Sbjct: 76 LI 77


>gi|240138702|ref|YP_002963174.1| putative shikimate kinase with helix-turn-helix domain
          [Methylobacterium extorquens AM1]
 gi|240008671|gb|ACS39897.1| putative shikimate kinase with helix-turn-helix domain
          [Methylobacterium extorquens AM1]
          Length = 299

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    L++K +   +G ++ +I++LE+G+  ++I  +  +A+ +   L  L+
Sbjct: 15 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLV 74


>gi|238917692|ref|YP_002931209.1| hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC
          27750]
 gi|238873052|gb|ACR72762.1| Hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC
          27750]
          Length = 98

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78
          +   N +N R++AKLTQ ++  +   + S++S++E      +++I  +  +A+ L   + 
Sbjct: 30 VIGANIKNYREQAKLTQVQLAEQAKISISYLSKIEAAGCDKSLSISVLNQIANVLGVEIS 89

Query: 79 KLLK 82
          +  K
Sbjct: 90 EFFK 93


>gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia
          intestinalis L1-82]
 gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia
          intestinalis L1-82]
          Length = 403

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R +  L Q E   + G +   +S+ E G+S  +I+N+ +++  LD  +  
Sbjct: 26 MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDT 85

Query: 80 LL 81
          L+
Sbjct: 86 LI 87


>gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
 gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
          Length = 479

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 15 ILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             +R +F     + +R++  LTQ  +    G + S+++ LE  +  +    ++ LA   
Sbjct: 4  APTDRKLFLGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQRPVTAQVLLRLAEAY 63

Query: 74 DTPLWKL 80
          D  L  L
Sbjct: 64 DLDLKTL 70


>gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis]
 gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 120

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  R  R+   L Q E+  + G   S IS  ETG    + DN+ ILA +LD     L
Sbjct: 14 VFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLRILADSLDVTTDYL 73

Query: 81 L 81
          L
Sbjct: 74 L 74


>gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616]
 gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616]
          Length = 270

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
               R+ R+E  L+Q ++  R G +Q+ I+ +E+G++  +  +++ +A  L   P W
Sbjct: 28 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVNPAW 84


>gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
          Length = 67

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  N+ +  R  A  +QKE+ ++TG  +  +S +E G    ++   + L H L+  L  
Sbjct: 1  MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDT 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|330982899|gb|EGH81002.1| DNA-binding protein [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 83

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+   LTQ++    +G  ++++SE+E G  +  ++ +  LA  +     +LL
Sbjct: 8  GAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLELL 64


>gi|238018404|ref|ZP_04598830.1| hypothetical protein VEIDISOL_00230 [Veillonella dispar ATCC
          17748]
 gi|237864875|gb|EEP66165.1| hypothetical protein VEIDISOL_00230 [Veillonella dispar ATCC
          17748]
          Length = 129

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINI 63
          R   +    +  + +   +   +IR    ++Q E+ +  G ++S++S+LE G   S +++
Sbjct: 12 RINTYEDPVLQHQYVCLGHKIAHIRISLNMSQYELAHHVGISRSYLSKLECGTGISGMSL 71

Query: 64 DNMIILAHTLDTPLWKLLK 82
          + +  +A      + +L++
Sbjct: 72 EILFKIAEAFQIDVAQLVR 90


>gi|229526104|ref|ZP_04415508.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis
          VL426]
 gi|229336262|gb|EEO01280.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis
          VL426]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|226357938|ref|YP_002787678.1| transcriptional regulator, XRE Family [Deinococcus deserti
          VCD115]
 gi|226320181|gb|ACO48174.1| putative transcriptional regulator, XRE Family [Deinococcus
          deserti VCD115]
          Length = 129

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+E  L  K+I      +  ++S+LE G++  +++ +  LA T    +  LL+
Sbjct: 5  ERLRELRQERGLRLKDIAGAAQISVPYLSDLERGRTNPSLETLQSLASTYGITVHDLLE 63


>gi|198275474|ref|ZP_03208005.1| hypothetical protein BACPLE_01639 [Bacteroides plebeius DSM
          17135]
 gi|218264237|ref|ZP_03478109.1| hypothetical protein PRABACTJOHN_03799 [Parabacteroides johnsonii
          DSM 18315]
 gi|237727375|ref|ZP_04557856.1| transcriptional regulator [Bacteroides sp. D4]
 gi|255008827|ref|ZP_05280953.1| hypothetical protein Bfra3_06792 [Bacteroides fragilis 3_1_12]
 gi|313146571|ref|ZP_07808764.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|198271103|gb|EDY95373.1| hypothetical protein BACPLE_01639 [Bacteroides plebeius DSM
          17135]
 gi|218222192|gb|EEC94842.1| hypothetical protein PRABACTJOHN_03799 [Parabacteroides johnsonii
          DSM 18315]
 gi|229434231|gb|EEO44308.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|313135338|gb|EFR52698.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 101

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
               ER  F              + RK+ K+TQ E+  + G  +S+IS +E G     I
Sbjct: 21 KPGTPEREEFRKEAYAYCMGQIICDARKKEKMTQSELAEKIGTNKSYISRIEKGIVDPGI 80

Query: 64 DNMIILAHTLDTPLWKLLKP 83
               +   L   + +++KP
Sbjct: 81 STFCRIIDALGLKI-EIVKP 99


>gi|187777825|ref|ZP_02994298.1| hypothetical protein CLOSPO_01417 [Clostridium sporogenes ATCC
          15579]
 gi|187774753|gb|EDU38555.1| hypothetical protein CLOSPO_01417 [Clostridium sporogenes ATCC
          15579]
          Length = 78

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 29/55 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          I   N + +R +  L+  ++   +G ++  +S++E G+S   I+ +  +A+ L  
Sbjct: 6  IISANLKKLRTDRNLSLGQLSELSGVSKVMLSQIEKGESNPTINTIWKIANGLQV 60


>gi|183601014|ref|ZP_02962507.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC
          25827]
 gi|188019351|gb|EDU57391.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC
          25827]
          Length = 91

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +      +++R +   + + +   TG +Q  IS  E G + I+++++   A+  +  +  
Sbjct: 10 LSVGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAKFANAFNVDIVV 69

Query: 80 LL 81
          LL
Sbjct: 70 LL 71


>gi|170759644|ref|YP_001785784.1| hypothetical protein CLK_3646 [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169406633|gb|ACA55044.1| conserved domain protein [Clostridium botulinum A3 str. Loch
          Maree]
          Length = 65

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++ +  G A+  I  +E GK   +++  I +   L+  L  L 
Sbjct: 4  KKIKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLF 61


>gi|153854486|ref|ZP_01995764.1| hypothetical protein DORLON_01759 [Dorea longicatena DSM 13814]
 gi|149753012|gb|EDM62943.1| hypothetical protein DORLON_01759 [Dorea longicatena DSM 13814]
          Length = 120

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    +  R E  LTQ+ +  + G + +++ +LE  K   +++       TL+    
Sbjct: 5  KTLFATLVKQGRMEMHLTQEALAEKLGISAAYLGDLERHKGGPSLELFCKTMQTLNISAD 64

Query: 79 KLLKP 83
            + P
Sbjct: 65 DYVYP 69


>gi|111020517|ref|YP_703489.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820047|gb|ABG95331.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 206

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+  +LT  ++    G  + ++S++E   ++ ++  ++ +   L+ P+  L +
Sbjct: 19 GPRLKAARQAQRLTLDDLAASCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLFE 78


>gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 193

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N R +R    ++ + +  + G ++  + ++E G+    +  +  +A+ L  P+  
Sbjct: 17 KQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITA 76

Query: 80 LL 81
          LL
Sbjct: 77 LL 78


>gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 218

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R    L+  E+  R+G AQS +S +E+G+     D +  +   L   + +  
Sbjct: 4  GSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQRQPTFDVIERICSGLGLSVAEFF 62


>gi|317490707|ref|ZP_07949171.1| hypothetical protein HMPREF1023_02871 [Eggerthella sp. 1_3_56FAA]
 gi|316910192|gb|EFV31837.1| hypothetical protein HMPREF1023_02871 [Eggerthella sp. 1_3_56FAA]
          Length = 82

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N  R  R E +L+Q+ +    G  Q++IS LE G+  +  + +  +A  L+  + 
Sbjct: 19 RKRLGNAVRVERVEQRLSQERLGRMVGTNQTYISLLEAGEINVTFNKLCRIAEALEVEVS 78

Query: 79 KLLK 82
           L++
Sbjct: 79 DLVR 82


>gi|239945646|ref|ZP_04697583.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          15998]
 gi|239992116|ref|ZP_04712780.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
          11379]
 gi|291449104|ref|ZP_06588494.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291352051|gb|EFE78955.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 202

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           + +  E        R++R+   LT +    R G + + +S LETG+   ++  ++ LA 
Sbjct: 5  DEGVPDELPGVAPRLRDLRRARGLTLETAAQRAGLSPAHLSRLETGRRQPSLPMLLGLAR 64

Query: 72 TLDTPLWKLL 81
             T + +LL
Sbjct: 65 IYGTTVSELL 74


>gi|170761110|ref|YP_001786101.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|226948018|ref|YP_002803109.1| putative DNA-binding protein [Clostridium botulinum A2 str.
          Kyoto]
 gi|169408099|gb|ACA56510.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|226842164|gb|ACO84830.1| putative DNA-binding protein [Clostridium botulinum A2 str.
          Kyoto]
 gi|322805053|emb|CBZ02613.1| yvao protein [Clostridium botulinum H04402 065]
          Length = 140

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F   F+NIRKE  L+Q+++   +  + + IS +E+G+    + + +  +A  L     +L
Sbjct: 3  FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|116695076|ref|YP_840652.1| transcriptional regulator [Ralstonia eutropha H16]
 gi|113529575|emb|CAJ95922.1| transcriptional regulator [Ralstonia eutropha H16]
          Length = 245

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R  F    R  RK    T   +   +G + + IS  E G+  +  +N   L   L   +
Sbjct: 24 DRETFGKRLRAARKAFGWTLAHLAELSGVSITTISRAERGQLALGYENFAALGQALQMDM 83

Query: 78 WKLL 81
            + 
Sbjct: 84 GSMF 87


>gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 202

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E  L+  ++  + G +   +S++E G S++ +  +  LA  LD     L+
Sbjct: 19 VGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 78


>gi|322434732|ref|YP_004216944.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321162459|gb|ADW68164.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 177

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R++R    L+Q+++  R    +++IS++E GK+   + ++  LA  L+  +  LL
Sbjct: 65  VATAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALEVDISALL 124

Query: 82  K 82
           +
Sbjct: 125 R 125


>gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 113

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R++  L+QKE+  + G   + +S  E+G+   + + +  LA   +  L  L+
Sbjct: 3  LGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGERRPDYETLCKLADLYEVSLDYLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|293608302|ref|ZP_06690605.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828875|gb|EFF87237.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 197

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IR     T   + +R   ++S IS +E G+++     +  LA+ L  PL +L 
Sbjct: 9  AQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67


>gi|294146896|ref|YP_003559562.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292677313|dbj|BAI98830.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 85

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                      N     K+  +TQ E+  R+G A S IS +  G+    +D +  LA  
Sbjct: 7  KRTSPLMTQLGANIARELKKLGITQGELSERSGVAASHISYMVRGQGNPTLDTLESLAGV 66

Query: 73 LDTPLWKLL 81
              + +LL
Sbjct: 67 FRLSVVELL 75


>gi|295676649|ref|YP_003605173.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
 gi|295436492|gb|ADG15662.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 291

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
            H       +     +  R  R    ++Q ++    GF+Q  IS +E+G+S    D ++
Sbjct: 4  TSHDPKVQPGD---LGSLLRYWRDVRGVSQLDLSLEAGFSQRQISFIESGRSVPGRDTLL 60

Query: 68 ILAHTLDTPLWK 79
           LA TLD PL +
Sbjct: 61 TLAQTLDVPLRE 72


>gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus
          ATCC 51756]
 gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus
          ATCC 51756]
          Length = 181

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R+E +L+ + +    G + S IS++E GK + +I  +  + + L   +  
Sbjct: 2  EQLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKVSPSIATLEKICNALGVHIAS 61

Query: 80 LL 81
          L 
Sbjct: 62 LF 63


>gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 207

 Score = 52.7 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A L +R+      R++R    L+   +    G ++S IS +E G+S+     +  LA  L
Sbjct: 14 ASLNDRI--AQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPTAVLLEKLATGL 71

Query: 74 DTPLWKLLK 82
          + PL  L +
Sbjct: 72 NVPLASLFE 80


>gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167]
          Length = 229

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 2  KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 57


>gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11
          str. 11368]
 gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
 gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11
          str. 11368]
 gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302]
 gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1]
 gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1]
 gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1]
 gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1]
 gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1]
 gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863]
          Length = 229

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 2  KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 57


>gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 220

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   F      +RK   LTQ E+  +       +S  E G    +I+ +  LA  L   L
Sbjct: 2  DAKTFGAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGVGLPDINTLEPLADALGLTL 61

Query: 78 WKLL 81
            L+
Sbjct: 62 ADLM 65


>gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 279

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
           ++ F +N R +R+  +LTQ++   + G  +  ++ +E G++   +  ++I ++      
Sbjct: 4  AKLFFGSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIEAGRTENPSAVDLIKISDFFGLS 63

Query: 77 LWKLLK 82
          +  L +
Sbjct: 64 IDNLFR 69


>gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 483

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M    R   H+               R +R++  LTQ  +    G + S++++LE  +  
Sbjct: 1  MKGGARRVSHVPKTFA------GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRP 54

Query: 61 INIDNMIILAHTLDTP 76
          I +  ++ LA   D P
Sbjct: 55 ITVSVLLALAERFDLP 70


>gi|254974906|ref|ZP_05271378.1| putative phage regulatory protein [Clostridium difficile
          QCD-66c26]
 gi|255092295|ref|ZP_05321773.1| putative phage regulatory protein [Clostridium difficile CIP
          107932]
 gi|255100379|ref|ZP_05329356.1| putative phage regulatory protein [Clostridium difficile
          QCD-63q42]
 gi|255306321|ref|ZP_05350492.1| putative phage regulatory protein [Clostridium difficile ATCC
          43255]
 gi|255314033|ref|ZP_05355616.1| putative phage regulatory protein [Clostridium difficile
          QCD-76w55]
 gi|255516713|ref|ZP_05384389.1| putative phage regulatory protein [Clostridium difficile
          QCD-97b34]
 gi|255649812|ref|ZP_05396714.1| putative phage regulatory protein [Clostridium difficile
          QCD-37x79]
 gi|255655370|ref|ZP_05400779.1| putative phage regulatory protein [Clostridium difficile
          QCD-23m63]
 gi|260682970|ref|YP_003214255.1| putative phage regulatory protein [Clostridium difficile CD196]
 gi|260686568|ref|YP_003217701.1| putative phage regulatory protein [Clostridium difficile R20291]
 gi|296451358|ref|ZP_06893096.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296880292|ref|ZP_06904257.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|306519913|ref|ZP_07406260.1| putative phage regulatory protein [Clostridium difficile
          QCD-32g58]
 gi|260209133|emb|CBA62326.1| putative phage regulatory protein [Clostridium difficile CD196]
 gi|260212584|emb|CBE03579.1| putative phage regulatory protein [Clostridium difficile R20291]
 gi|296259774|gb|EFH06631.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296428735|gb|EFH14617.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 65

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +  RK   +TQ ++  + G    +IS++E G     +     ++  L+  + ++
Sbjct: 1  MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEV 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|237736107|ref|ZP_04566588.1| DNA-binding protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421818|gb|EEO36865.1| DNA-binding protein [Fusobacterium mortiferum ATCC 9817]
          Length = 177

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK    T K++   TG +  ++S +E   ++ +I+N+  +   L   L ++L
Sbjct: 3  LGEKIKTIRKNKDYTLKQLSEITGLSIGFLSNIERDLNSPSINNLQQICSALGINLMEIL 62


>gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652]
 gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 203

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 27 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 85


>gi|170750171|ref|YP_001756431.1| anaerobic benzoate catabolism transcriptional regulator
          [Methylobacterium radiotolerans JCM 2831]
 gi|170656693|gb|ACB25748.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Methylobacterium radiotolerans JCM 2831]
          Length = 294

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    L++K +   +G ++ +I++LE G+  ++I  +  +A+ +   L  L+
Sbjct: 15 LGRRVRHARTVRGLSRKVLSQTSGLSERYIAQLEGGQGNVSIILLRRVANAMGVRLDDLI 74

Query: 82 K 82
           
Sbjct: 75 T 75


>gi|90416630|ref|ZP_01224561.1| putative DNA-binding protein [marine gamma proteobacterium
          HTCC2207]
 gi|90331829|gb|EAS47057.1| putative DNA-binding protein [marine gamma proteobacterium
          HTCC2207]
          Length = 192

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 30/65 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                 +    +RK+ KLT  ++   +G ++S +S++E G++   +     +A      
Sbjct: 10 PASQALSSRVTALRKKNKLTLDQLAGASGVSRSMLSQIERGQANPTLTVTFRIAQAFGMS 69

Query: 77 LWKLL 81
          + +L+
Sbjct: 70 IGELV 74


>gi|312129639|ref|YP_003996979.1| transcriptional regulator, xre family [Leadbetterella byssophila
          DSM 17132]
 gi|311906185|gb|ADQ16626.1| transcriptional regulator, XRE family [Leadbetterella byssophila
          DSM 17132]
          Length = 472

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           I   R+IF    +  R E   + +E+  R   + S+++E+E GK     + ++ L   L
Sbjct: 2  KIDPIRLIFGLKLKQFRLEKGWSLQELSERVNISPSYLNEIEKGKKYPKTEKIVELGRIL 61

Query: 74 DTPLWKLL 81
                L+
Sbjct: 62 GKDYNDLV 69


>gi|170748375|ref|YP_001754635.1| XRE family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170654897|gb|ACB23952.1| transcriptional regulator, XRE family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 208

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  E+  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 27 LGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 86


>gi|15838321|ref|NP_299009.1| hypothetical protein XF1720 [Xylella fastidiosa 9a5c]
 gi|9106786|gb|AAF84529.1|AE003995_11 hypothetical protein XF_1720 [Xylella fastidiosa 9a5c]
          Length = 124

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R  R +  + Q+E+ +  G  +S + ++E G+   ++  ++ +A  L     +L+
Sbjct: 53  FGKAVRAFRMDQGVAQEELASMAGIERSHMGKIERGEHLPSLAVILKVAAALKMSGTELM 112


>gi|325971904|ref|YP_004248095.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324027142|gb|ADY13901.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 190

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IR   KLT   +  R+G +++ +S++E+ K    +  +  +A  L+  L  L
Sbjct: 6  MIGKNIQRIRNSRKLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKIARGLNVELNDL 65

Query: 81 L 81
          L
Sbjct: 66 L 66


>gi|307578025|gb|ADN53644.1| Stl [Staphylococcus aureus]
          Length = 278

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +    + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 25 YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 83


>gi|283469697|emb|CAQ48908.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus
          subsp. aureus ST398]
 gi|298693729|gb|ADI96951.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus
          ED133]
          Length = 261

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +    + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 8  YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66


>gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2]
          Length = 180

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ A +T  ++    G +Q  +S++E G+       ++ +A   D P
Sbjct: 5  IRSLRESAGMTLTDLSRMAGVSQGLLSQIERGRGNPAYLTLLKIAKAFDVP 55


>gi|225028236|ref|ZP_03717428.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353]
 gi|224954415|gb|EEG35624.1| hypothetical protein EUBHAL_02508 [Eubacterium hallii DSM 3353]
          Length = 490

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RKE KLTQ ++   TG  +  IS LE+   T +ID +  +A  L+  +  L +
Sbjct: 17 RKEQKLTQAQLAEMTGINRGMISRLESCDYTPSIDQLQSIAEVLNFEVVDLFE 69


>gi|163851535|ref|YP_001639578.1| anaerobic benzoate catabolism transcriptional regulator
          [Methylobacterium extorquens PA1]
 gi|218530345|ref|YP_002421161.1| anaerobic benzoate catabolism transcriptional regulator
          [Methylobacterium chloromethanicum CM4]
 gi|254561302|ref|YP_003068397.1| shikimate kinase with helix-turn-helix domain [Methylobacterium
          extorquens DM4]
 gi|163663140|gb|ABY30507.1| Shikimate kinase [Methylobacterium extorquens PA1]
 gi|218522648|gb|ACK83233.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Methylobacterium chloromethanicum CM4]
 gi|254268580|emb|CAX24537.1| putative shikimate kinase with helix-turn-helix domain
          [Methylobacterium extorquens DM4]
          Length = 299

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    L++K +   +G ++ +I++LE+G+  ++I  +  +A+ +   L  L+
Sbjct: 15 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGMRLDDLV 74


>gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC
          27560]
 gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC
          27560]
          Length = 293

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             ++ RK+A L+Q+++  + G ++  I++ E G  T +I N++ +A      + +LL
Sbjct: 5  EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQISVDELL 62


>gi|119962079|ref|YP_946843.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119948938|gb|ABM07849.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 191

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P     I        +  R  R+  +LT +++ + TG  + ++S +E   ++ ++ +
Sbjct: 2  KALPVEPSNIPVA---IGSRIRAARQAQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58

Query: 66 MIILAHTLDTPLWKLL 81
          ++ L   L   +  L 
Sbjct: 59 LVTLCQVLSVSVGDLF 74


>gi|126698960|ref|YP_001087857.1| putative phage regulatory protein [Clostridium difficile 630]
 gi|115250397|emb|CAJ68219.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 65

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F NN +  RK   +TQ ++  + G    +IS++E G     +     ++  L+  + ++
Sbjct: 1  MFKNNLKYYRKCKGMTQIQLARKAGITNDYISQIERGIKNPGLLMAKKISSILEQNIEEV 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|11094394|gb|AAG29617.1|AF217235_20 Orf20 [Staphylococcus aureus]
          Length = 267

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +    + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 14 YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 72


>gi|82750104|ref|YP_415845.1| pathogenicity island protein [Staphylococcus aureus RF122]
 gi|82655635|emb|CAI80031.1| bovine pathogenicity island protein Orf20 [Staphylococcus aureus
          RF122]
          Length = 261

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +    + +RK  KLTQ ++  RTGF+Q+ IS  E G   I ++ + I    L  P + L
Sbjct: 8  YGTIIKTLRKYMKLTQSKLSERTGFSQNTISNHENGNRNIGVNEIEIYGKGLGIPSYIL 66


>gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088]
 gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088]
          Length = 68

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          NN R  R+E  LTQ+++    G ++  I+ +ETGK   ++     L+     P+  L KP
Sbjct: 3  NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALFKP 62


>gi|323140942|ref|ZP_08075855.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322414680|gb|EFY05486.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 78

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 21 IFVNNFRNI-------RKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIILAH 71
          +F + ++ I       RK   +TQ+++ +  G    ++S +E G  T  +++  ++ +A 
Sbjct: 1  MFASRYKKICAKIVFYRKLKSMTQEKLADEVGITPQYLSRIENGGYTKCVSLSTLMKIAE 60

Query: 72 TLDTPLWKLLK 82
           L   + +L++
Sbjct: 61 KLGITMSELME 71


>gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903]
 gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903]
          Length = 158

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RK   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 229

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + +++R+E  L+Q+++ +  G A S I   E+G+   N + + I+A   +  +  LL
Sbjct: 5  FSKSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQREPNYETLEIIADFFNVDMNYLL 64


>gi|308066906|ref|YP_003868511.1| transcriptional regulator yazB [Paenibacillus polymyxa E681]
 gi|305856185|gb|ADM67973.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus
          polymyxa E681]
          Length = 66

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      R  RK    TQ+E+  RTG + + +  +E G  T++ D + ++A TL+  +
Sbjct: 2  ENMQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNLIAQTLEIEV 61

Query: 78 WKL 80
           +L
Sbjct: 62 REL 64


>gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 212

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94

Query: 82 KP 83
           P
Sbjct: 95 AP 96


>gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 190

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRKE ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 10 VGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 69


>gi|254384422|ref|ZP_04999764.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1]
 gi|194343309|gb|EDX24275.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1]
          Length = 462

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E     +  R +R+EA L+Q ++      + S+IS LE GK T + + +  +A  L    
Sbjct: 3  ESQTLGSRIRRLRREAGLSQMDLAGE-NLSPSYISLLEAGKRTPSPEVLEQIAARLGCAP 61

Query: 78 WKLLK 82
           +LL+
Sbjct: 62 GQLLE 66


>gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium
          K411]
 gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734]
 gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium
          K411]
 gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734]
          Length = 501

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 24/66 (36%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +     ER    +  R +RKE  ++Q  +      + S+++++E     +    +  +  
Sbjct: 12 ATESNTERPFVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITA 71

Query: 72 TLDTPL 77
                
Sbjct: 72 AFGVDP 77


>gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 167

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R    +  +  RK   +TQ E+  ++G   S I + E+G+     D +  +A  L   
Sbjct: 4  RHSIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGIS 61


>gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 187

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R E  ++  E+    G  ++ +S LE G     ++ +  +   L  PL  +L
Sbjct: 15 VGRRIRSLRTERGISLSELARLAGVGKATLSGLENGVRNPRLETLYAITAQLGVPLTAVL 74


>gi|241762941|ref|ZP_04761003.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241367893|gb|EER62112.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 81

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H +D +L          R  R    ++Q+E+ +R+   +S++S +E G     I ++  +
Sbjct: 8  HANDPVLIA---LGAAIRRSRLARGISQEELAHRSAIDRSYMSSIERGGQNPGIVSVTRI 64

Query: 70 AHTLDTPLWKLL 81
          A  ++  + +L+
Sbjct: 65 ARAMEMTVTELM 76


>gi|168181316|ref|ZP_02615980.1| prolyl aminopeptidase [Clostridium botulinum Bf]
 gi|237793769|ref|YP_002861321.1| hypothetical protein CLJ_B0515 [Clostridium botulinum Ba4 str.
          657]
 gi|182675351|gb|EDT87312.1| prolyl aminopeptidase [Clostridium botulinum Bf]
 gi|229264073|gb|ACQ55106.1| conserved domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 65

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++ +  G A+  I  +E GK   +++  I +   L+  L  L 
Sbjct: 4  KKMKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLF 61


>gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family
          [Rhizobium etli CFN 42]
          Length = 203

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 27 GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 85


>gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
          PCA]
 gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter
          sulfurreducens PCA]
 gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related
          [Geobacter sulfurreducens KN400]
          Length = 212

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +TQK   +  G  Q ++S +E G+   +   +I L  T    +  LL
Sbjct: 12 LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERGRKVPSDTLVIALCRTYGVNVTWLL 71

Query: 82 K 82
          +
Sbjct: 72 Q 72


>gi|87119803|ref|ZP_01075700.1| transcriptional regulator, putative [Marinomonas sp. MED121]
 gi|86165279|gb|EAQ66547.1| transcriptional regulator, putative [Marinomonas sp. MED121]
          Length = 184

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+   L+Q+++  R G   S IS +ET + + ++ ++  +   +   L +  
Sbjct: 4  GERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRVSPSVSSLEKILAGMGMSLTEFF 62


>gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM
          13280]
 gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM
          13280]
          Length = 155

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+E  LTQ+E+  R    +  +S  ETG +   ID + ++A  LD P+ +LL
Sbjct: 8  LAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTRLL 63


>gi|188584668|ref|YP_001916213.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179349355|gb|ACB83625.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 435

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E  +TQ+E+  +  F +S++S++E G    +   + I+A  L+ PL    +
Sbjct: 9  GQKIKRARYEKDMTQEELAGK-DFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFYE 67

Query: 83 P 83
          P
Sbjct: 68 P 68


>gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
          Length = 330

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  E      N +  RK+ KL+Q E+  + G A++ I   E  +   NI  ++ L+  ++
Sbjct: 2  IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMN 61

Query: 75 TPLWKLL 81
            +  LL
Sbjct: 62 RSIDSLL 68


>gi|168210486|ref|ZP_02636111.1| immunity repressor protein [Clostridium perfringens B str. ATCC
          3626]
 gi|170711430|gb|EDT23612.1| immunity repressor protein [Clostridium perfringens B str. ATCC
          3626]
          Length = 199

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R    +TQ+++ ++   ++S I + E+    +N D + IL   L+  L+ 
Sbjct: 2  ETLGKRIKKYRILKNMTQQQLADKLNKSKSTIQKYESDSVNLNTDTLNILCDVLNIDLFT 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D]
          Length = 194

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R    L+   +  R+  ++S IS +E G+S+     +  L+  L   L  L +
Sbjct: 8  AQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGVTLASLFE 67


>gi|149916993|ref|ZP_01905494.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149822271|gb|EDM81662.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 115

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H+    L  + +F    R +R    LTQ+E+  R+  +   I  LE  K   +++ +  +
Sbjct: 4  HVERPALDRKKLFAKRLRRLRANLGLTQEELAERSELSADTIRRLEGSKFNPSLETLHKI 63

Query: 70 AHTLDTPLWKLL 81
          A  L+     LL
Sbjct: 64 AAGLEMSTGLLL 75


>gi|42523852|ref|NP_969232.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100]
 gi|39576059|emb|CAE80225.1| putative DNA-binding protein [Bdellovibrio bacteriovorus HD100]
          Length = 188

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK+ +LTQ  +    G  +S ++ +E+G    ++ N+  +   L     +LL
Sbjct: 11 LAAQITELRKKRQLTQAALAKLAGVPRSTLTNMESGMGNPSLVNLAKVCAALQVSFEELL 70


>gi|83950311|ref|ZP_00959044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
 gi|83838210|gb|EAP77506.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
          Length = 190

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               + R +RK   +T   + +  G +  W+S++E   S  +I ++  +A  L  P+  
Sbjct: 10 QTLGADLRALRKARGVTLAALADALGRSVGWLSQVERDLSEPSISDLRKMADVLGVPISM 69

Query: 80 LL 81
          L 
Sbjct: 70 LF 71


>gi|315924082|ref|ZP_07920308.1| XRE family transcriptional regulator [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315622484|gb|EFV02439.1| XRE family transcriptional regulator [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 67

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+++ +  G ++  IS +E G     I   + +   L   L +L 
Sbjct: 5  RMKAARAARDLSQQQLADLVGVSRQTISAVEKGNYNPTIKLCVAICRALGKTLDELF 61


>gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
 gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
          Length = 166

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N + IRK   LTQKE+  + G +Q   ++ E   +      +  +A  LD  +  
Sbjct: 3  KSMGENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAIPKFKTLQNIADALDVSVGD 62

Query: 80 LL 81
          ++
Sbjct: 63 II 64


>gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219]
 gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219]
          Length = 180

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LT +E+ +RT   + ++S+LE  +++ +I ++  +A  L   L    +
Sbjct: 5  GARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRTSPSIQSLADVAEALGVNLSGFFQ 64


>gi|226312433|ref|YP_002772327.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226095381|dbj|BAH43823.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + IRKE  L+  +    TG +++ + ++E GKS   I  +  +A  L      L+
Sbjct: 9  GENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKSAPTITTLWKIASGLRLSFSSLI 67


>gi|253700194|ref|YP_003021383.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251775044|gb|ACT17625.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 233

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R +R+E  L+Q+++   +   + +IS LE GK   ++ ++  LA  L +    
Sbjct: 5  EAFGIVIRRLRRERNLSQEKLSTASCLDRKFISNLEGGKQQPSLVSVFALAGALSSTASS 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|166033570|ref|ZP_02236399.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC
          27755]
 gi|218280987|ref|ZP_03487577.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989]
 gi|166026755|gb|EDR45512.1| hypothetical protein DORFOR_03296 [Dorea formicigenerans ATCC
          27755]
 gi|218217758|gb|EEC91296.1| hypothetical protein EUBIFOR_00135 [Eubacterium biforme DSM 3989]
          Length = 100

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA+  E  I      + R +  +TQK++  +TG  Q+ IS +E G    ++  +  LAH 
Sbjct: 24 DALQPEYDII-QAMIDARVQQNMTQKDLSAKTGITQADISRIENGTRNPSLSMVKKLAHG 82

Query: 73 LDTPLWKLLKP 83
          L   L     P
Sbjct: 83 LGMQLKLEFVP 93


>gi|149275690|ref|ZP_01881835.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39]
 gi|149233118|gb|EDM38492.1| hypothetical protein PBAL39_20505 [Pedobacter sp. BAL39]
          Length = 71

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 38/63 (60%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I +   R +RK++ ++Q  +  + G +Q+ +S++E G+  +++ ++  LA  L+  L+ 
Sbjct: 4  KIVLQRIRILRKKSGMSQLALAKKLGMSQNALSKIELGEIELSLSHLYQLADLLEIDLFD 63

Query: 80 LLK 82
          L++
Sbjct: 64 LVR 66


>gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
 gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare
          Y25]
          Length = 210

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +RKEA LT  ++  R+G A S +S++E  + +   D ++ LA  L   +  L+ 
Sbjct: 25 AARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTILSLAEGLGVDITHLVT 84


>gi|291545610|emb|CBL18718.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 118

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|262274204|ref|ZP_06052016.1| transcriptional regulator [Grimontia hollisae CIP 101886]
 gi|262222014|gb|EEY73327.1| transcriptional regulator [Grimontia hollisae CIP 101886]
          Length = 210

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +R        I   R+      + IR    LT +E    TG A+S +S++E  + +    
Sbjct: 16 ERAGTQADAPIAPLRL--GERLKEIRTNNGLTLEEASKLTGLARSTLSKIENEQISPTFQ 73

Query: 65 NMIILAHTLDTPLWKLLKP 83
           M  LA  L+  + +L  P
Sbjct: 74 AMQKLAAGLNIDIPQLFAP 92


>gi|271966453|ref|YP_003340649.1| hypothetical protein Sros_5123 [Streptosporangium roseum DSM
          43021]
 gi|270509628|gb|ACZ87906.1| conserved hypothetical protein [Streptosporangium roseum DSM
          43021]
          Length = 198

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R  R+ A L+ +E+  R   ++  +  LE  +   N+  ++ LA TL   +  L+
Sbjct: 11 VANNVRTARRRAGLSLEELGRRAQVSKGALVALEKAQGNPNLATLVRLADTLGISVSDLM 70

Query: 82 K 82
          +
Sbjct: 71 Q 71


>gi|225575526|ref|ZP_03784136.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037276|gb|EEG47522.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM
          10507]
          Length = 124

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F    + +R +  L+Q+E+  R  G  Q  I++ E  ++   ++ +  +A  LD P  
Sbjct: 1  MTFGERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVPFD 60

Query: 79 KLL 81
           L+
Sbjct: 61 NLV 63


>gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens]
 gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens]
          Length = 330

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  E      N +  RK+ KL+Q E+  + G A++ I   E  +   NI  +I L+  ++
Sbjct: 2  IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61

Query: 75 TPLWKLL 81
            +  LL
Sbjct: 62 RSIDSLL 68


>gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi
          ATCC 484]
 gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
          Length = 221

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R++  LT  ++ + TG + S +S LE+G     ++ ++ LA     PL +L+
Sbjct: 36 VGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGGRRPTLELLLPLAREYQVPLDELV 95


>gi|313623764|gb|EFR93902.1| transcriptional regulator [Listeria innocua FSL J1-023]
          Length = 68

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  ++Q+E+      ++  IS +E G     ++  I +  TL   L  L 
Sbjct: 5  KMKVARVEKDISQEELAKLINVSRQTISSVEAGNYNPTLNLCIAICKTLGKTLDDLF 61


>gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08]
 gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07]
 gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08]
 gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07]
          Length = 144

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N +++RK  + TQ+E+  +   ++  I++ E+G+S  +I + I LA   +  L 
Sbjct: 2  KNMINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLD 61

Query: 79 KLL 81
           L+
Sbjct: 62 DLV 64


>gi|288947745|ref|YP_003445128.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
 gi|288898261|gb|ADC64096.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
          Length = 143

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q ++      +Q ++S+LE+G  T +++ +  LA   +     LL
Sbjct: 5  RLKSARIARDLSQAQVATALDLSQGFVSKLESGDKTPSVELLQKLAKLYEVTESHLL 61


>gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113]
 gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401]
 gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076]
 gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508]
 gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str.
          EC4024]
 gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042]
 gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113]
 gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401]
 gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508]
 gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042]
          Length = 229

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       +  R    LTQK + +  G +Q+ I ++ETGK+      ++ +A+ L  
Sbjct: 2  KTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTT-KIVEIANALGV 57


>gi|153012131|ref|YP_001373341.1| cupin 2 domain-containing protein [Ochrobactrum anthropi ATCC
          49188]
 gi|151564019|gb|ABS17512.1| Cupin 2 conserved barrel domain protein [Ochrobactrum anthropi
          ATCC 49188]
          Length = 202

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 1  MPRRKRDE-PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP+  + E    S+    +        R  R+   LT   +   +G +   +S++E G  
Sbjct: 1  MPKVNKAEISPTSEPAPNDAGDIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLV 60

Query: 60 TINIDNMIILAHTLDTPLWKLLKP 83
          +  +  +  +A  L     +L+ P
Sbjct: 61 SPTVRTLYTIAEVLSMSPAQLIDP 84


>gi|226314526|ref|YP_002774422.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226097476|dbj|BAH45918.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 189

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 31/52 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +++R   K T K+I  +T  + S++S++E GKS+I ++++  ++  L    
Sbjct: 9  IKSLRVGKKKTLKQIAEKTQLSISFLSQVERGKSSITLESLKKISEALGVSP 60


>gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain
          [Roseobacter sp. GAI101]
 gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain
          [Roseobacter sp. GAI101]
          Length = 204

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 11 LSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
            D    E         FR +R+   ++ +E+  ++G +   IS++E   +  ++  +  
Sbjct: 3  DPDKPTPEDTPGAIGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRVLTA 62

Query: 69 LAHTLDTPLWKLL 81
          +   L+ P+  + 
Sbjct: 63 IRRALNVPMQVMF 75


>gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM
          13275]
 gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM
          13275]
          Length = 359

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M       N+RK+   +Q+E+  R   ++  +S+ E+G+S   ++ +I ++   +     
Sbjct: 1  MTLSEKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESVPTLEKLIRISEIFEVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|205371967|ref|ZP_03224785.1| Xre family transcriptional regulator [Bacillus coahuilensis m4-4]
          Length = 69

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    R  RK    TQ++     G + S + E+E G    + + +  +   L+ P   L+
Sbjct: 6  WGRRIRAYRKLKGFTQEDFAKELGVSVSVLGEVERGNRMPSAELIHKVTEVLNIPYQDLI 65

Query: 82 KP 83
           P
Sbjct: 66 PP 67


>gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 330

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  E      N +  RK+ KL+Q E+  + G A++ I   E  +   NI  +I L+  ++
Sbjct: 2  IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61

Query: 75 TPLWKLL 81
            +  LL
Sbjct: 62 RSIDSLL 68


>gi|148256143|ref|YP_001240728.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408316|gb|ABQ36822.1| putative transcriptional regulator, with HTH domain and a
          RmlC-like cupin domain [Bradyrhizobium sp. BTAi1]
          Length = 222

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D      A         +  +  R+   LT K++  +TG A S +S++E G  ++  D +
Sbjct: 3  DTAVSESASESPHSQLGHCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKL 62

Query: 67 IILAHTLDTPLWKLLKP 83
          + L   L   + +L  P
Sbjct: 63 LQLTSGLQMDIAELFSP 79


>gi|118587639|ref|ZP_01545049.1| putative DNA-binding protein [Stappia aggregata IAM 12614]
 gi|118439261|gb|EAV45892.1| putative DNA-binding protein [Stappia aggregata IAM 12614]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++R+      +E+  RTG +++ +S +E G ++   + +  LA      + +L 
Sbjct: 8  LARRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAFGLSMAELF 67


>gi|86748264|ref|YP_484760.1| transcriptional regulator [Rhodopseudomonas palustris HaA2]
 gi|86571292|gb|ABD05849.1| transcriptional regulator [Rhodopseudomonas palustris HaA2]
          Length = 232

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           + P  ++  L ER +     R IR+E  L+  ++ + +  +   +S++E G+ + ++  +
Sbjct: 38  NAPQDTERSL-ERAL-GAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTL 95

Query: 67  IILAHTLDTPLWKLL 81
             +A  L+ PL  L 
Sbjct: 96  QSIAGALNVPLSLLF 110


>gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88]
 gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88]
          Length = 136

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+ K+TQ+E+  + G + S +   ET     + + +I +A      L  L
Sbjct: 4  LLGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDARKPSYEVLIKIADYFKVSLDYL 63

Query: 81 LK 82
          L+
Sbjct: 64 LR 65


>gi|302872695|ref|YP_003841331.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis
          OB47]
 gi|302575554|gb|ADL43345.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis
          OB47]
          Length = 100

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R +  L+QKE+  + G +Q+ +S+LE+G     +  +  +A  L   L  + +
Sbjct: 41 QYRIKNNLSQKELAAKLGISQAMVSKLESGDYNPTVKMLYEIAQNLGFELEIVFR 95


>gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator
          ['Nostoc azollae' 0708]
 gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family
          ['Nostoc azollae' 0708]
          Length = 377

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN ++IR    ++Q+E+ N     +  IS +E+G    ++   + LA  L   + +L 
Sbjct: 9  NNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYAPSVAISLRLAKALGCQVEELF 66


>gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis
          BB-12]
          Length = 348

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP+R         A  ++R + F +N + +R    +TQ+++    G ++  +S+ E+ K+
Sbjct: 1  MPKR-------VGAKEKDRTMGFKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKA 53

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
             +D +++L       L  L+
Sbjct: 54 YPEMDKLLMLCDMFGVSLDDLV 75


>gi|229125204|ref|ZP_04254327.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201]
 gi|228658251|gb|EEL13968.1| Helix-turn-helix domain protein [Bacillus cereus 95/8201]
          Length = 80

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F +  R+IRK+  +TQ+++  +  F+  S IS +E GK  ++ + +  LA+ L   + 
Sbjct: 1  MTFGSRVRDIRKQKNITQEKLAKKLDFSHASAISFIENGKRRLDAEKIPTLANALGVSIN 60

Query: 79 KLL 81
          +L 
Sbjct: 61 ELF 63


>gi|225352439|ref|ZP_03743462.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225156946|gb|EEG70315.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 167

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R    +TQ+++    G ++  IS+ E+ K+   +D +++L       L  
Sbjct: 1  MSFKENLQYLRGSRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMLCDMFGVTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 212

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94

Query: 82 KP 83
           P
Sbjct: 95 AP 96


>gi|145593721|ref|YP_001158018.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145303058|gb|ABP53640.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +  E+  RT  + S IS +ETGK TI++D ++ LA  L   L  
Sbjct: 9  KVIRTRLRALRTTLGFSLDELAARTNLSPSTISRIETGKRTISLDVLLPLAAALHVDLDS 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|16519701|ref|NP_443821.1| transcription regulator; symbiotic plasmid stability locus
          [Sinorhizobium fredii NGR234]
 gi|2496605|sp|P55411|Y4DL_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator
          y4dL
 gi|7465606|pir||T02775 y4dL protein - Rhizobium sp. plasmid pNGR234a
 gi|2182355|gb|AAB91641.1| transcription regulator; symbiotic plasmid stability locus
          [Sinorhizobium fredii NGR234]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             R  R+  K++Q+E+  R+G  QS IS++E G     + +++ +A  LD  + 
Sbjct: 10 QQLRAAREAQKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALDLEIV 64


>gi|332300885|ref|YP_004442806.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica
          DSM 20707]
 gi|332177948|gb|AEE13638.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica
          DSM 20707]
          Length = 355

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R  R    +T +E+ ++ G + + IS LE G   I    +I L+  LD P+
Sbjct: 6  GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPI 60


>gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026]
          Length = 161

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  LTQ+E+  +    +  IS  E  ++  + + +I++A T    L +L+
Sbjct: 3  FNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAETFGVSLDELI 62


>gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli
          BSR3]
 gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli
          BSR3]
          Length = 186

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R     + + +   +G ++S IS +E G+S+     +  LA  L  PL  L 
Sbjct: 8  AERLRALRDARGWSLETLAEHSGVSRSNISLIERGQSSPTAVVLDKLATALAVPLSSLF 66


>gi|302544123|ref|ZP_07296465.1| transcriptional regulator, XRE family with cupin sensor
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302461741|gb|EFL24834.1| transcriptional regulator, XRE family with cupin sensor
          [Streptomyces himastatinicus ATCC 53653]
          Length = 194

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LT +++ +    + S +S +E G+    +  +  +A  L  PL +L+ 
Sbjct: 2  GRCIQGLRYDRGLTLQQLADTAEVSVSMLSSVERGQKAPTVVVLARIADGLGVPLAELVT 61


>gi|301164396|emb|CBW23954.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 101

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                + RK A+LTQ+E+ NR G  +S+IS++E G  T  +  +  +A  +   +   L+
Sbjct: 42  GQILLDARKNARLTQEELANRIGADKSYISKIERGLITPTVSTLYRIAAAMGLSVE--LR 99

Query: 83  P 83
           P
Sbjct: 100 P 100


>gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii str. W23]
 gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii ATCC 6633]
 gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis
          subsp. spizizenii str. W23]
          Length = 261

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F      +RKE  L+Q+ +  +    +  IS+ E G+     + ++++ +  +  +  
Sbjct: 1  MTFGEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQGFPETEKLLMIGNIFEVSIDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|260575082|ref|ZP_05843083.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
 gi|259022704|gb|EEW25999.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
          Length = 207

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R       A + E +      R +RK    T ++   + G A+S +S++E G+ +   + 
Sbjct: 11 RIAREDGAAAVVEPLNLGARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQMSPTYEA 70

Query: 66 MIILAHTLDTPLWKLLKP 83
          +  LA  L   + +L  P
Sbjct: 71 VKKLAEGLAITVPQLFTP 88


>gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 118

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I       +RKE KLTQ++I    G ++  IS+ E G    + +N+  LA   + P+  L
Sbjct: 3  IIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|148257853|ref|YP_001242438.1| putative phage-related transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
 gi|146410026|gb|ABQ38532.1| putative Phage-related transcriptional regulator [Bradyrhizobium
           sp. BTAi1]
          Length = 143

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RK+  L+Q ++  R G  Q ++SE+E G+ + ++  +  LA  L   +  L+
Sbjct: 68  LAFFRKKRGLSQDDLAKRVGITQGYLSEIEGGRKSGDVQTLRKLADALKVTIDSLV 123


>gi|65319741|ref|ZP_00392700.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
          Length = 83

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 33/56 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++I   N + IR++ KL+ +++   TG +++ I ++E G+S+  +  +  +A+   
Sbjct: 20 QLILAKNLKTIREKEKLSLEKVSQLTGVSKTMIGQIERGESSPTLTTIWKIANGFK 75


>gi|325121964|gb|ADY81487.1| hypothetical protein BDGL_000901 [Acinetobacter calcoaceticus
          PHEA-2]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IR     T   + +R   ++S IS +E G+++     +  LA+ L  PL +L 
Sbjct: 9  AQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVPLTQLF 67


>gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 158

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 1  MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|315645456|ref|ZP_07898580.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315278934|gb|EFU42244.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 65

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q+E+    G ++  I  +E GK   ++   + +   L   L  L 
Sbjct: 5  KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLF 61


>gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++   T  ++   TG + S +S LE G+   N++ ++ LA     PL +L+
Sbjct: 15 VGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLDELV 74


>gi|308274330|emb|CBX30929.1| hypothetical protein N47_E44410 [uncultured Desulfobacterium sp.]
          Length = 124

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R+   +   E+  + G + +++S++E GK    ID +  +A  L   +  L+
Sbjct: 69  IRAWREHKMIKMNELAKKVGISSAYLSQIENGKRNPTIDTLKAIARELRVEIEVLI 124


>gi|282856547|ref|ZP_06265821.1| transcriptional regulator, XRE family [Pyramidobacter piscolens
          W5455]
 gi|282585613|gb|EFB90907.1| transcriptional regulator, XRE family [Pyramidobacter piscolens
          W5455]
          Length = 127

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +RK  K+TQ+++ + T  ++ +I  LE+ + + ++  +  LA  L      
Sbjct: 1  MTLGLRIRTLRKALKMTQQQLADATEVSRIYIQALESNRRSPSMKLLHRLADKLGVETSD 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|269793680|ref|YP_003313135.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269095865|gb|ACZ20301.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
          10542]
          Length = 190

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R +R     T   + +R   + S +S +ETG   I +D ++ +A  L T L +L
Sbjct: 9  IVRQRIRGLRLARGWTLDALASRCFLSASTLSRIETGHRRIALDQLVPIAQALGTTLDQL 68

Query: 81 LKP 83
          ++P
Sbjct: 69 VEP 71


>gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84]
 gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407]
 gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84]
 gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407]
          Length = 158

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 1  MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 182

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|260905597|ref|ZP_05913919.1| transcriptional regulator [Brevibacterium linens BL2]
          Length = 483

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                + +      R  RK+  LT  E+  + G A S IS +E GK   ++  +  +A 
Sbjct: 10 DAEAEADTLSIGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAK 69

Query: 72 TLDTPLWKLLKP 83
           L T + +L+ P
Sbjct: 70 ALHTEVAELIDP 81


>gi|325289439|ref|YP_004265620.1| transcriptional regulator, XRE family [Syntrophobotulus
          glycolicus DSM 8271]
 gi|324964840|gb|ADY55619.1| transcriptional regulator, XRE family [Syntrophobotulus
          glycolicus DSM 8271]
          Length = 65

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++ N  G  +  I  +E+G     +   I +   L   L  L 
Sbjct: 4  KKLKIARIECDMSQEDLANIVGVTRQTIGLIESGNYNPTLKLCIAICKALHKNLNDLF 61


>gi|325271900|ref|ZP_08138357.1| helix-turn-helix domain-containing protein [Pseudomonas sp.
          TJI-51]
 gi|324102970|gb|EGC00360.1| helix-turn-helix domain-containing protein [Pseudomonas sp.
          TJI-51]
          Length = 93

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R +R    LTQ++    +  +++++S LE G  +  I  +  LA  +     
Sbjct: 6  RESLGEALRRMRISHDLTQEDFAVVS--SRTYVSSLERGLKSPTIQKIEELAGRMGVHPL 63

Query: 79 KLL 81
           L+
Sbjct: 64 SLI 66


>gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 225

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+   +  ++    G +   +S++E G S+ ++  +  LA      +  LL
Sbjct: 33 LGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSASVKTLHQLAREFGVSVNTLL 92

Query: 82 K 82
          +
Sbjct: 93 R 93


>gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 314

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  +++RK  K+TQ+++    G +QS I  +E+ K   + + ++ LA   D  +  L
Sbjct: 1  MLGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESNKQGASNETLVKLAKLFDVTVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|326204926|ref|ZP_08194779.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325984975|gb|EGD45818.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 110

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N + +RK+ K +Q+ +  +    Q  IS  E G    NI+ +  LA      +  
Sbjct: 1  MSFSDNLKKLRKQYKYSQEYLAEKLKTTQQNISLYERGLVAPNIETLTQLADCFRVSVDY 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|223985502|ref|ZP_03635559.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM
          12042]
 gi|223962519|gb|EEF66974.1| hypothetical protein HOLDEFILI_02865 [Holdemania filiformis DSM
          12042]
          Length = 254

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++  F     + R++ ++TQK++  +   +   +S+ E G +  +I  ++ LA  LD  +
Sbjct: 5  DKQQFGAFVADQRRQKQMTQKDLAQKLMISDKAVSKWERGLNMPDITLLVPLAQALDVSV 64

Query: 78 WKLLK 82
           +LL+
Sbjct: 65 AELLE 69


>gi|168830123|gb|ACA34351.1| transcription regulator [Paenibacillus polymyxa]
          Length = 63

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  RK    TQ+E+  RTG + + +  +E G  T++ D + I+A TL+  + +
Sbjct: 1  MQLAQRLRAFRKLKGFTQQELAERTGISLTVLGAVERGNRTVDPDMLNIIAQTLEIEVRE 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 330

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  E      N +  RK+ KL+Q E+  + G A++ I   E  +   NI  +I L+  ++
Sbjct: 2  IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61

Query: 75 TPLWKLL 81
            +  LL
Sbjct: 62 RSIDSLL 68


>gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1]
 gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82]
 gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1]
 gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82]
 gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
 gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 252

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +    +RKE ++TQK++ ++   +   +S+ E G S  N+  +I +A  L   + +LL
Sbjct: 9  FGHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELL 68

Query: 82 K 82
          +
Sbjct: 69 Q 69


>gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC
          29149]
 gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC
          29149]
 gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 65

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  RK A ++Q E+  R    Q  IS  E G     I+    +   L+    ++L
Sbjct: 3  LGENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELNASADEIL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|83593946|ref|YP_427698.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170]
 gi|83576860|gb|ABC23411.1| Transcriptional Regulator, XRE family with Cupin sensor domain
           [Rhodospirillum rubrum ATCC 11170]
          Length = 248

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +   N R +R    L+   +   +G +++ + ++E G+S   I  +  +A  LD P
Sbjct: 67  VVGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVP 122


>gi|332654987|ref|ZP_08420729.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332516330|gb|EGJ45938.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 118

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  LTQ+E+ + +  +   I+ +E G+   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 201

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+    T  ++   TG + S +S LE+G+    ++ ++ LA      L +L+
Sbjct: 16 VGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKAYGVQLDELV 75


>gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella
          capsiferriformans ES-2]
 gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans
          ES-2]
          Length = 117

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    RK+   TQ E+  R G     +S  E G +  ++  +  LA  L  PL+KL+
Sbjct: 12 NIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLV 68


>gi|302338806|ref|YP_003804012.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301635991|gb|ADK81418.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 191

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +    +      N + +RKE +LT   +   +G +++ +S++ET K    I  +  +A
Sbjct: 2  DPEQQPPQ---VGKNIQKVRKEKRLTLGHLSQVSGVSKAMLSQIETEKVNPTIATIWKIA 58

Query: 71 HTLDTPLWKLLK 82
            L   L  LLK
Sbjct: 59 QGLQISLNTLLK 70


>gi|256841360|ref|ZP_05546867.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737203|gb|EEU50530.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 109

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+R   E  + +A+   R+      +  R E  LTQ+++  R G  ++ IS LE G S I
Sbjct: 23 PKRDAFESDVDEALHAYRL--GEAIKKARIEQNLTQEQLGERIGVKRAQISRLERGYS-I 79

Query: 62 NIDNMIILAHTLDT 75
           I  M  +   L  
Sbjct: 80 TIPTMRRVFKALGV 93


>gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum
          ferrodiazotrophum]
          Length = 181

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +RK   L+ + +  + G + S +S++E+G+ + +I  +  +   L+ P+  
Sbjct: 2  KQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQVSPSIATLEKVCAALELPITT 61

Query: 80 LL 81
          L 
Sbjct: 62 LF 63


>gi|222111450|ref|YP_002553714.1| XRE family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730894|gb|ACM33714.1| transcriptional regulator, XRE family [Acidovorax ebreus TPSY]
          Length = 271

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +   H           F    R+ R+  +L+Q ++ +    +   +S +ETG+++ + D 
Sbjct: 2  QAMHHAPALSTPA--PFGERLRHWRQHRRLSQLDLAHAAEVSTRHLSCVETGRASPSRDM 59

Query: 66 MIILAHTLDTPLWK 79
          ++ LAH LD PL +
Sbjct: 60 VLRLAHRLDVPLRE 73


>gi|167574113|ref|ZP_02366987.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia oklahomensis C6786]
          Length = 191

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R+  KLT  E     G ++ ++S++E G++T +I +++ +A  L   +
Sbjct: 16 GIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTM 70


>gi|145286424|gb|ABP52080.1| DNA-binding protein [Bacillus subtilis]
          Length = 129

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPL 77
          +  F +  R +RK  +LT ++    +G +  +IS LETGK        +  LA   + P 
Sbjct: 6  KFKFSDYLRQLRKMRQLTLEKAAEESGVSAGYISMLETGKKEYPTAKTLKKLAKAYNIPH 65

Query: 78 WKLLK 82
           +LL 
Sbjct: 66 DQLLT 70


>gi|12746568|gb|AAK07492.1| hypothetical protein [IncJ plasmid R391]
 gi|20095202|gb|AAM08068.1| hypothetical protein [Providencia rettgeri]
 gi|262318118|dbj|BAI48444.1| hypothetical protein [Proteus mirabilis]
          Length = 106

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + R  R     +Q+E+  R+G  QS IS++E+G   + I ++I LA  LD  L  L+ P
Sbjct: 10 ESLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLEL--LVAP 67


>gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens
          DSM 3043]
 gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein
          [Chromohalobacter salexigens DSM 3043]
          Length = 195

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   + +  
Sbjct: 6  VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 65


>gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15]
 gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15]
          Length = 216

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              + IR    LTQKE  +  G  Q ++S +E  K T +   +I L +  +     L
Sbjct: 13 GRRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLIALCNLYEISPSWL 70


>gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4]
 gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella loihica PV-4]
          Length = 182

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   L   L    
Sbjct: 4  GANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 62


>gi|325289203|ref|YP_004265384.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324964604|gb|ADY55383.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 117

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R       +N R E  LTQ+E+      A   + +LE G    +I+ +  L   L+  +
Sbjct: 4  DRKRLGGAIKNARLENNLTQEELAELADIATVHMKQLEAGSRNPSIEVLYKLVRLLNLSV 63

Query: 78 WKLLKP 83
            +  P
Sbjct: 64 DAVFFP 69


>gi|318081943|ref|ZP_07989252.1| hypothetical protein SSA3_35774 [Streptomyces sp. SA3_actF]
          Length = 167

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R+   L+   +  R+G  ++ +S LE G     ++ +  +   L  PL
Sbjct: 2  GARIRELREARALSLSALARRSGLGKATLSGLEAGTRNPTLETLYAVTTALGVPL 56


>gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 232

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R  R   K+TQ+ +  R G +++ IS+ E+G +  N  N++ LA  L   +  LL
Sbjct: 4  ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGKNLVSLAKALGVTIEWLL 61


>gi|126741323|ref|ZP_01757000.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126717579|gb|EBA14304.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 189

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +      + R +RK   LT  +I      +  W+S++E   S  +I ++  +++ L  P
Sbjct: 6  PQTATLGADIRALRKARGLTLTDIAGMLDRSVGWLSQVERDLSEPSISDLRQISNCLGVP 65

Query: 77 LWKLL 81
          +  L 
Sbjct: 66 MSMLF 70


>gi|85702861|ref|ZP_01033965.1| DNA-binding protein, putative [Roseovarius sp. 217]
 gi|85671789|gb|EAQ26646.1| DNA-binding protein, putative [Roseovarius sp. 217]
          Length = 215

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 2  PRRKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
          P +          +  ER            R  RK+  +T  E+ N T  +   +S++E 
Sbjct: 6  PAKLVKLTQDPHKLRDEREKVLEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIEN 65

Query: 57 GKSTINIDNMIILAHTLDTPLWKLLK 82
          G ++ ++  +  LA  L  PL    K
Sbjct: 66 GNTSPSLTTLQTLARALSVPLTAFFK 91


>gi|326388769|ref|ZP_08210357.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206743|gb|EGD57572.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 243

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                  R +R++  L+  ++    G +   +S++E G+ + ++ ++  LA  L+ P+  
Sbjct: 54  KALGARVRQLRRQQDLSVADLAGAAGLSTGMLSKIENGQISASLTSIHSLALALNVPISS 113

Query: 80  LL 81
           L 
Sbjct: 114 LF 115


>gi|291279358|ref|YP_003496193.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
 gi|290754060|dbj|BAI80437.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
          Length = 186

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     RN+RK    +  ++    G  +S+IS +E GK+  ++  +  + +  +  +  L
Sbjct: 7  ILGEKLRNLRKSQGYSLNQLAKAVGKTKSYISMIENGKAVPSMATLKSITNFFNVTISDL 66

Query: 81 LK 82
          L+
Sbjct: 67 LE 68


>gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001]
          Length = 212

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94

Query: 82 KP 83
           P
Sbjct: 95 AP 96


>gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
 gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp.
          equisimilis GGS_124]
          Length = 257

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  ++Q+ +  + G  +  IS+ E  +    ++ ++ L++  +  +  LL
Sbjct: 3  FGEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 199

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  ++   I   TG ++S +S LE+G+   +++ ++ +A     PL +L+
Sbjct: 14 VGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQRRPSLELLLPIAQAHQVPLDELV 73


>gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 130

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L       L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFKISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ RKE  L+Q ++      ++  IS  E G +  ++ N+++L+   +  L K
Sbjct: 1  MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDVQNLLLLSKVFEVSLDK 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
          Length = 181

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 26/56 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F    R +R+E  ++ +++      +   IS++E   +  ++  +  +A  L+  +
Sbjct: 3  FGFKIRKLRQEKSISIEQLAEMAKLSTGLISQVERNITGPSVTTLWKIAKALNVSM 58


>gi|300172874|ref|YP_003772039.1| PbsX transcriptional repressor [Leuconostoc gasicomitatum LMG
          18811]
 gi|299887252|emb|CBL91220.1| transcriptional repressor of pbsx genes,putative [Leuconostoc
          gasicomitatum LMG 18811]
          Length = 154

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +RK   LTQK++ ++   +++ ++ +ET K   +   +  +A+  D P+  L
Sbjct: 3  ITAQRIKQLRKIYGLTQKDLADKINSSRTNVARIETDKVHPSYPMLSTIANAFDVPIEYL 62


>gi|237794050|ref|YP_002861602.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|229261462|gb|ACQ52495.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 140

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F   F+NIRKE  L+Q+++   +  + + IS +E+G+    + + +  +A  L     +L
Sbjct: 3  FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|255656204|ref|ZP_05401613.1| putative regulatory protein [Clostridium difficile QCD-23m63]
 gi|296450362|ref|ZP_06892119.1| probable regulatory protein [Clostridium difficile NAP08]
 gi|296878774|ref|ZP_06902775.1| probable regulatory protein [Clostridium difficile NAP07]
 gi|296260772|gb|EFH07610.1| probable regulatory protein [Clostridium difficile NAP08]
 gi|296430202|gb|EFH16048.1| probable regulatory protein [Clostridium difficile NAP07]
          Length = 105

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  RK+A LT KE  N  G +  +I+++E+GK   ++   I     L+     L+K
Sbjct: 5  GKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVSILNISADVLIK 64


>gi|254391662|ref|ZP_05006860.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294812966|ref|ZP_06771609.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|326441482|ref|ZP_08216216.1| hypothetical protein SclaA2_10473 [Streptomyces clavuligerus ATCC
          27064]
 gi|197705347|gb|EDY51159.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294325565|gb|EFG07208.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 281

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E H +    R +       R  RK  KL+Q+E+  R   +  ++ ++E GK  +      
Sbjct: 2  ESHDNPYTERPKDFIGEELRRRRKAHKLSQRELAARMFISGGYMGQIEVGKRRLT----E 57

Query: 68 ILAHTLDTPL 77
           LA  LD  L
Sbjct: 58 ELAERLDKEL 67


>gi|186685942|ref|YP_001869138.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186468394|gb|ACC84195.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
          73102]
          Length = 377

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN ++IR    ++Q+++ N     +  IS +E+G    ++   + LA  L   +  L 
Sbjct: 9  NNLKSIRTRLGMSQQDLANIASVTRQTISGVESGLYAPSVAITLRLAKALGCQVEDLF 66


>gi|331269964|ref|YP_004396456.1| helix-turn-helix domain-containing protein [Clostridium botulinum
          BKT015925]
 gi|329126514|gb|AEB76459.1| helix-turn-helix domain protein [Clostridium botulinum BKT015925]
          Length = 184

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I  +N + IR +  ++   +   TG +++ + ++E G+S   +  +  +A  L   
Sbjct: 7  IIGSNLKTIRNQKNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVS 62


>gi|319442794|ref|ZP_07991950.1| hypothetical protein CvarD4_13644 [Corynebacterium variabile DSM
          44702]
          Length = 99

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 5  KRDEPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           ++  HLS+  LR +    M      R +R++  LTQ+++ +    ++  +  +E G+ +
Sbjct: 5  PQNSAHLSETTLRRQRLRRMSLGAVIRVLRRQKGLTQQQLADAVEVSKRSVVRVEKGEQS 64

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
          I +D     A  L      LL+
Sbjct: 65 ITMDTFGRYADALGMRPSDLLR 86


>gi|238026838|ref|YP_002911069.1| putative helix-turn-helix transcriptional regulator [Burkholderia
           glumae BGR1]
 gi|237876032|gb|ACR28365.1| Putative helix-turn-helix transcriptional regulator [Burkholderia
           glumae BGR1]
          Length = 128

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            R  R   +LTQ  +    G ++ ++S++ET +     D ++ +AH L+  +  L++P
Sbjct: 66  VRAWRNHRRLTQDALATAAGISKPYLSQIETRQRVGTTDALVKIAHALNVSIAVLIEP 123


>gi|163791661|ref|ZP_02186057.1| DNA-binding protein [Carnobacterium sp. AT7]
 gi|159873083|gb|EDP67191.1| DNA-binding protein [Carnobacterium sp. AT7]
          Length = 170

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R     +Q ++ +    ++  IS+ E G S  ++DN++ L+   +  + +
Sbjct: 1  MALGERLKASRVNKGYSQGDVADYLHISRQSISKWENGNSYPDLDNLVKLSTYYEVSIDE 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|56708846|ref|YP_164887.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56680531|gb|AAV97196.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 204

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 2  PRRKRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          P +  DE    +A+   +        R+ RK+  LT +E        +S +S++E  ++ 
Sbjct: 3  PVQAEDEGLSPEALEAPDGETLGKMIRDARKDKGLTLEEAARSAAIGRSTLSKIENNQTR 62

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           + D +  L   LD    +L 
Sbjct: 63 PSFDIIRRLMQALDLETPQLF 83


>gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 76

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           IF    +++R+E+ L Q+EI    G  Q+  S+ ETGKS  N++N++ LA    T    
Sbjct: 10 FIFPKRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKTTTDF 69

Query: 80 LL 81
          LL
Sbjct: 70 LL 71


>gi|328953825|ref|YP_004371159.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans
          DSM 11109]
 gi|328454149|gb|AEB09978.1| transcriptional regulator, XRE family [Desulfobacca acetoxidans
          DSM 11109]
          Length = 415

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++ F +  R  R+ A ++Q+ +  + G   S+I+ LE+G+       ++ LA  L     
Sbjct: 6  KLHFGHLMRQSREAAGISQRALAQQAGLDVSYINRLESGERRPRRGTLLKLASALRITGQ 65

Query: 79 KL 80
          +L
Sbjct: 66 EL 67


>gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 200

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR++   T  ++  +TG + S +S LE+G     ++ ++ LA      L +L+
Sbjct: 12 VGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGGRRPTLELLLPLARAHGVALDELV 71


>gi|238925355|ref|YP_002938872.1| hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656]
 gi|238877031|gb|ACR76738.1| Hypothetical protein EUBREC_3010 [Eubacterium rectale ATCC 33656]
 gi|291527628|emb|CBK93214.1| transcriptional regulator, XRE family [Eubacterium rectale
          M104/1]
          Length = 100

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R +  LTQKE+  RTG  Q+ IS+LE G    ++  +  LAH +   L     P
Sbjct: 40 ARIKNNLTQKELAARTGIDQADISKLENGTRNPSLKLLKRLAHGMGMQLKIEFVP 94


>gi|229083930|ref|ZP_04216233.1| Transcriptional regulator [Bacillus cereus Rock3-44]
 gi|228699365|gb|EEL52047.1| Transcriptional regulator [Bacillus cereus Rock3-44]
          Length = 80

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           + V+  +  R +  LTQ+++  + G  +  IS +E GK   +++  + + + L+  L  
Sbjct: 13 ELAVSKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLELCLNICYALNQTLND 72

Query: 80 LL 81
          L 
Sbjct: 73 LF 74


>gi|325957710|ref|YP_004293122.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus
          30SC]
 gi|325334275|gb|ADZ08183.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus
          30SC]
          Length = 125

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +R +   +Q+E+  +   ++  +S+ E+G+S  ++D +++L++  D     LLK
Sbjct: 5  QKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYLLK 63


>gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R E  +T  ++   TG + S +S LE+G     ++ ++ LA     PL +L+
Sbjct: 12 VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGGRRPTLELLLPLATAHQVPLDELV 71


>gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
 gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
          Length = 150

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N + IR+E KLTQ E+ N  G +Q   S  ET K+   ++N++ LA+  +T
Sbjct: 4  LGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNT 57


>gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 199

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +     +N RKE  LTQ+ +      ++  +S+ E G S  ++DN++ L+     
Sbjct: 32 FMIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGV 87


>gi|77543203|gb|ABA87016.1| hypothetical protein [Vibrio cholerae]
 gi|259156517|gb|ACV96461.1| transcriptional regulator, XRE family [Vibrio cholerae Mex1]
          Length = 106

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + R  R     +Q+E+  R+G  QS IS++E+G   + I ++I LA  LD  L  L+ P
Sbjct: 10 KSLREARVRKGFSQRELSARSGVPQSHISKIESGSVDLRISSLIALARVLDLEL--LVAP 67


>gi|107100810|ref|ZP_01364728.1| hypothetical protein PaerPA_01001838 [Pseudomonas aeruginosa
          PACS2]
 gi|296390262|ref|ZP_06879737.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 14 AILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              ER         N R +R +A L+Q+ +      ++  +  +E+G   +++  +  +
Sbjct: 2  PNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDRI 61

Query: 70 AHTLDTPLWKLLK 82
          A  L      L++
Sbjct: 62 AAALGVLFPDLVQ 74


>gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 215

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 38 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 97

Query: 82 KP 83
           P
Sbjct: 98 AP 99


>gi|240169857|ref|ZP_04748516.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
          12478]
          Length = 138

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  ++    +S    R   I  +  R  R+ A+++ +++  R+G +  ++S++E G   
Sbjct: 1  MPPEEKFGAKVSSVTSRASDI-GSFIRTQRETAQVSMRQLAERSGVSNPYLSQVERGLRK 59

Query: 61 INIDNMIILAHTLDTPLWKL 80
           + D +  +A  L      L
Sbjct: 60 PSADVLAQIAKALRVSAEVL 79


>gi|227327673|ref|ZP_03831697.1| putative regulatory protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 97

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E    +   R  R E  +TQ+ + N  G  QS+++++E G+  +++   + +AH L    
Sbjct: 21 EYQSVIKTLREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDA 80

Query: 78 WKLLK 82
            +L+
Sbjct: 81 STVLE 85


>gi|291288546|ref|YP_003505362.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290885706|gb|ADD69406.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 79

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I     +  R EAKLTQ ++  +TG  Q  IS++E G     +D + I+   L+  +
Sbjct: 10 ILGQAIKAARLEAKLTQSQLAEKTGLRQGTISDIENGTQRAKLDTLFIILSALNLDM 66


>gi|200387340|ref|ZP_03213952.1| helix-turn-helix domain protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|199604438|gb|EDZ02983.1| helix-turn-helix domain protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
          Length = 265

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  NN + +R +  +TQ+E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 1  MLQNNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57


>gi|163797620|ref|ZP_02191569.1| Helix-turn-helix motif [alpha proteobacterium BAL199]
 gi|159177095|gb|EDP61657.1| Helix-turn-helix motif [alpha proteobacterium BAL199]
          Length = 262

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R  R++  ++Q ++    G +Q  +S LETG++  +   ++ LA  LD PL  
Sbjct: 17 FGVLLRRWRRQRGVSQLDLALNAGTSQRHLSFLETGRARPSRYMVVALAGALDVPLRD 74


>gi|160942838|ref|ZP_02090078.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445890|gb|EDP22893.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium
          prausnitzii M21/2]
          Length = 110

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RKE   T ++   R   + +++ +LE G     ++  I +   LD     L
Sbjct: 4  LLGQRIREQRKEKGWTIEQFAERVDLSANYVGDLERGVKIPKLETFIRIVEVLDVSADVL 63

Query: 81 LK 82
          ++
Sbjct: 64 IR 65


>gi|27376187|ref|NP_767716.1| anaerobic benzoate catabolism transcriptional regulator
          [Bradyrhizobium japonicum USDA 110]
 gi|27349326|dbj|BAC46341.1| bll1076 [Bradyrhizobium japonicum USDA 110]
          Length = 302

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            DA  R         R  R    +++K +   +G ++ +I++LE+GK  ++I  +  ++
Sbjct: 4  SPDAESRFLEQLGQRVRTTRALRGMSRKVLAKVSGISERYIAQLESGKGNVSIVLLRRVS 63

Query: 71 HTLDTPLWKLL 81
            +   L  LL
Sbjct: 64 DAMGAHLEDLL 74


>gi|328954168|ref|YP_004371502.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM
          11109]
 gi|328454492|gb|AEB10321.1| helix-turn-helix domain protein [Desulfobacca acetoxidans DSM
          11109]
          Length = 172

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +RK+  +T +E+  R    ++ ++++E G S   I+ +  L+        +L++
Sbjct: 9  IRTLRKKRGITAEELARRANLTRATVAKIEGGDSNPTIETIEALSSVFQLTSSELIR 65


>gi|296451497|ref|ZP_06893233.1| MerR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296880153|ref|ZP_06904120.1| MerR family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259672|gb|EFH06531.1| MerR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296428878|gb|EFH14758.1| MerR family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R + ++T K++  +T  +  ++S+LE G +++  D++  +A  LD  L
Sbjct: 8  GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62


>gi|229821739|ref|YP_002883265.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229567652|gb|ACQ81503.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 513

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R+   LTQ ++  R G +QS I+ +E G   ++++ +  +   L+  L
Sbjct: 18 IRGARQNKGLTQAQLAERLGTSQSAIARIEQGSQNLSVELLTRINRALEADL 69


>gi|255655505|ref|ZP_05400914.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
          Length = 194

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R + ++T K++  +T  +  ++S+LE G +++  D++  +A  LD  L
Sbjct: 6  GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60


>gi|254975050|ref|ZP_05271522.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092439|ref|ZP_05321917.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100520|ref|ZP_05329497.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306462|ref|ZP_05350633.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255314177|ref|ZP_05355760.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255516856|ref|ZP_05384532.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649957|ref|ZP_05396859.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|306520039|ref|ZP_07406386.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|328887610|emb|CAJ68359.2| Transcriptional regulator, HTH-type [Clostridium difficile]
          Length = 194

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R + ++T K++  +T  +  ++S+LE G +++  D++  +A  LD  L
Sbjct: 6  GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60


>gi|153833004|ref|ZP_01985671.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01]
 gi|156977184|ref|YP_001448090.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116]
 gi|269963350|ref|ZP_06177680.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3]
 gi|148870725|gb|EDL69631.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01]
 gi|156528778|gb|ABU73863.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116]
 gi|269831924|gb|EEZ86053.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3]
          Length = 207

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|126699098|ref|YP_001087995.1| putative transcriptional regulator [Clostridium difficile 630]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R + ++T K++  +T  +  ++S+LE G +++  D++  +A  LD  L
Sbjct: 9  GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 63


>gi|90577969|ref|ZP_01233780.1| putative transcriptional regulator, HTH_3family protein [Vibrio
          angustum S14]
 gi|90441055|gb|EAS66235.1| putative transcriptional regulator, HTH_3family protein [Vibrio
          angustum S14]
          Length = 208

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  + ++   ++ I   ++      + IR    LT +E   RTG A+S +S++E  + + 
Sbjct: 11 PSMRIEKTQAAEHIAPLKL--GERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQISP 68

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 69 TFQAMQKLATGLAIDIPQLFEP 90


>gi|260683110|ref|YP_003214395.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686708|ref|YP_003217841.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|260209273|emb|CBA62609.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212724|emb|CBE03830.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R + ++T K++  +T  +  ++S+LE G +++  D++  +A  LD  L
Sbjct: 8  GAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62


>gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
 gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
          Length = 181

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +RK   +T  ++   T  +  ++S++E G +  ++ ++  +A TL T    LL
Sbjct: 4  LGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMARPSMSSLFRIAQTLGTTQQGLL 63


>gi|296110966|ref|YP_003621347.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
          11154]
 gi|295832497|gb|ADG40378.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
          11154]
          Length = 134

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  R +  ++Q++I ++   ++  IS  E+G +T ++ N+I L    D  L  L
Sbjct: 5  LFPQQLKKYRTKLGMSQEDIADKLFISRQAISRWESGDATPDLTNLIKLTDIFDCSLDSL 64

Query: 81 L 81
          +
Sbjct: 65 V 65


>gi|260431789|ref|ZP_05785760.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260415617|gb|EEX08876.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 187

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R  + L+  +    TG +++ + ++E G+S+  I  +  +A     PL  L+
Sbjct: 9  KLREVRAASGLSLAKAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFQMPLSALI 65


>gi|261344511|ref|ZP_05972155.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282567421|gb|EFB72956.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 95

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 R +R+   ++ K++    G +Q   S  E G+  I++D + +L+       
Sbjct: 7  KSVGLKIRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSVEP 64


>gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
 gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
          Length = 207

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 30 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 89

Query: 82 KP 83
           P
Sbjct: 90 AP 91


>gi|162448892|ref|YP_001611259.1| hypothetical protein sce0622 [Sorangium cellulosum 'So ce 56']
 gi|161159474|emb|CAN90779.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 202

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           RK+      +  L    +  +  RN+RK+  LT K++  RTG + S +S++E  +S+ +I
Sbjct: 124 RKKGLARTPEEQL--HRVIGDTIRNLRKDKDLTLKQMARRTGLSVSLLSQIERAESSASI 181

Query: 64  DNMIILAHTLDTPLWKLL 81
            ++  +A  L++ +  L 
Sbjct: 182 SSLYKIAVALESRIQDLF 199


>gi|119716897|ref|YP_923862.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides
          sp. JS614]
 gi|119537558|gb|ABL82175.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Nocardioides
          sp. JS614]
          Length = 508

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  R+ RK   LTQ ++ +  G +QS I+ +E G   ++++ +  +   LD+ +  L
Sbjct: 10 GNLIRDARKHRGLTQHQLADLLGTSQSAINRIEKGHQNLSLEMLARIGAALDSEIVAL 67


>gi|28867944|ref|NP_790563.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213969308|ref|ZP_03397446.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301381369|ref|ZP_07229787.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060988|ref|ZP_07252529.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302130560|ref|ZP_07256550.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28851180|gb|AAO54258.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213925986|gb|EEB59543.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 90

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R+   LTQ++    +G  ++++SE+E G  +  ++ +  LA  +     +
Sbjct: 5  KAIGAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLE 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 167

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +     +N RKE  LTQ+ +      ++  +S+ E G S  ++DN++ L+     
Sbjct: 1  MIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGV 55


>gi|322517691|ref|ZP_08070554.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
 gi|322123679|gb|EFX95271.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
          Length = 114

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            ++ R    LTQ+ + +  G ++  IS +E G     +D  I +  TLD   W  L+
Sbjct: 5  KLKSARVAKDLTQQGLADAIGVSRQTISPIEKGDYNPTMDLYIAICKTLDQLFWGKLR 62


>gi|319937580|ref|ZP_08011985.1| DNA-binding protein [Coprobacillus sp. 29_1]
 gi|319807420|gb|EFW04029.1| DNA-binding protein [Coprobacillus sp. 29_1]
          Length = 177

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R   +LT +E+ NR+   + ++S++E   ++ +I  +  +   L T L    
Sbjct: 4  GSKIKRLRIANQLTLEELANRSELTKGFLSQVERNLTSPSITTLEDILEALGTTLHDFF 62


>gi|300787758|ref|YP_003768049.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299797272|gb|ADJ47647.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 411

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTP 76
          +++         R+   L+Q  + +  G  + W+S++E G+  I  +D +  LA  L   
Sbjct: 6  DQLSIGERIAFYRRRRGLSQAVLADLVGRTEDWLSKIERGERDIRRLDVLADLARALRVT 65

Query: 77 LWKLL 81
          L  LL
Sbjct: 66 LGDLL 70


>gi|294339778|emb|CAZ88140.1| putative lambda repressor [Thiomonas sp. 3As]
          Length = 159

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 7   DEPHLSDAILRE-RMIFVNNFRN-------IRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           D+   S A L+E R     NF         +R  A L+Q+++  + G+ Q  +S  E+GK
Sbjct: 61  DQNADSAAQLQEGRKWVAENFYQDRPTLASLRLAAGLSQRQLGEKCGWEQPHVSRYESGK 120

Query: 59  STINIDNMIILAHTLDTPLWK 79
               +   + LA  L   L +
Sbjct: 121 HEPTLTVAMTLAAALGVGLDR 141


>gi|291530670|emb|CBK96255.1| Helix-turn-helix [Eubacterium siraeum 70/3]
          Length = 121

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R++R +  ++Q E+  +   +   +SE+E GK+ + +   + +   L      
Sbjct: 10 KAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSADV 69

Query: 80 LLK 82
          LL+
Sbjct: 70 LLR 72


>gi|227819136|ref|YP_002823107.1| HTH-type transcriptional regulator y4dL [Sinorhizobium fredii
          NGR234]
 gi|227338135|gb|ACP22354.1| putative HTH-type transcriptional regulator y4dL [Sinorhizobium
          fredii NGR234]
          Length = 196

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             R  R+  K++Q+E+  R+G  QS IS++E G     + +++ +A  LD  + 
Sbjct: 10 QQLRAAREARKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALDLEIV 64


>gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R++RKE  +TQ ++ N     +S I++ E+     ++D +  ++   +  +  L
Sbjct: 1  MFGEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGIIPSVDTLQKISALFNVSIDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|220920643|ref|YP_002495944.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS
           2060]
 gi|219945249|gb|ACL55641.1| transcriptional regulator, XRE family [Methylobacterium nodulans
           ORS 2060]
          Length = 138

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R IRK   LTQ+++++ TG  QS+ISE+E+     + +    LA  L 
Sbjct: 80  LRAIRKHKGLTQQQLQDATGLPQSYISEIESSTKRASAEAKAKLAQALG 128


>gi|139440031|ref|ZP_01773344.1| Hypothetical protein COLAER_02383 [Collinsella aerofaciens ATCC
          25986]
 gi|133774653|gb|EBA38473.1| Hypothetical protein COLAER_02383 [Collinsella aerofaciens ATCC
          25986]
          Length = 78

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + +R     +Q++  N     +S+ + +E G+  +++ N+  +A      + 
Sbjct: 12 QKSFGMRCKELRAGLGCSQEQFANLIEMDRSYYASIEVGRRNVSLSNLKKIADVFQITIS 71

Query: 79 KLLK 82
          +L++
Sbjct: 72 ELMR 75


>gi|67078396|ref|YP_246013.1| DNA-binding protein [Bacillus cereus E33L]
 gi|66970702|gb|AAY60674.1| possible transcriptional regulator [Bacillus cereus E33L]
          Length = 143

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  +  R++   +Q+ +  +   ++  +S+ ETGK+  +I  +I L+      + +
Sbjct: 1  MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPSIGVIIDLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6]
 gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6]
          Length = 177

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 32/65 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +E  +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +  
Sbjct: 16 KEFAMIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVS 75

Query: 77 LWKLL 81
             ++
Sbjct: 76 YVDIV 80


>gi|330819140|ref|YP_004348002.1| DNA-binding protein [Burkholderia gladioli BSR3]
 gi|327371135|gb|AEA62490.1| DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 204

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA +  R       + +R E KLT  ++    G ++S +SE+E  K+   I     L + 
Sbjct: 20 DASIPPR--VGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNA 77

Query: 73 LDTPLWKLL 81
          L   L +L 
Sbjct: 78 LGISLDELF 86


>gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 256

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RKE   TQ+++ +  G  +  I   E G++   I  ++ L+   +  +  LL
Sbjct: 6  NNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRADPRIQTLLKLSDLFNVSVDDLL 63


>gi|313887742|ref|ZP_07821424.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312846351|gb|EFR33730.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 185

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 31/59 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++    ++ R+E  L+Q+++ ++    +  IS+ E  K+T  + N+  L+      +
Sbjct: 2  KIMYGEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDM 60


>gi|288871456|ref|ZP_06117657.2| DNA-binding protein [Clostridium hathewayi DSM 13479]
 gi|288863406|gb|EFC95704.1| DNA-binding protein [Clostridium hathewayi DSM 13479]
          Length = 222

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R E KL+Q+ +  + G ++  +S+ ET +S     N+  LA      L  
Sbjct: 23 MSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKAKNLTELATVFHVGLSG 82

Query: 80 LLKP 83
          L++P
Sbjct: 83 LVEP 86


>gi|269216832|ref|ZP_06160686.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
 gi|269129639|gb|EEZ60723.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
          Length = 200

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R+ + L+Q+++  +   ++  +S+ E  +S+ + DN+I LA      + +LL
Sbjct: 6  AKRLYEYRRASGLSQEQVAAKISVSRQAVSKWECAESSPDTDNLIALAMLYGVTVDELL 64


>gi|269102614|ref|ZP_06155311.1| putative cI prophage repressor protein [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162512|gb|EEZ41008.1| putative cI prophage repressor protein [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 220

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++       +  R +  ++QK++ +  G+  S +S  E+G  +I++D+   LA  L    
Sbjct: 3  KKTEVGLRLKQFRAKRGISQKDLADLCGWGASRVSNYESGIRSISLDDADTLAKHLGIKA 62

Query: 78 WKLL 81
          +++L
Sbjct: 63 YQIL 66


>gi|298207442|ref|YP_003715621.1| DNA-binding protein, putative [Croceibacter atlanticus HTCC2559]
 gi|83850078|gb|EAP87946.1| DNA-binding protein, putative [Croceibacter atlanticus HTCC2559]
          Length = 75

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             N   +R+E +++Q ++       +  +S +E G+    I  +  +A+ L+ 
Sbjct: 12 VGENIAKLRREKEMSQMDVCAIIDMDKPNLSAIENGRQNATILTLKKIANALEV 65


>gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
          Length = 158

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 1  MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|297203904|ref|ZP_06921301.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|297148527|gb|EDY57126.2| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R E  L  + +    G + S +S++ETGKS  ++  +  +   L   +  L 
Sbjct: 34 GARIRQARLERGLGLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVEALF 92


>gi|293402146|ref|ZP_06646285.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304538|gb|EFE45788.1| conserved domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 69

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E++I  N+ +++R E KL+Q ++    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKEQLILKNHIKDVRSEKKLSQSQLAELVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|227112883|ref|ZP_03826539.1| transcriptional regulator [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 96

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + ++ G  +S + ++E G+    +  +  +A TL   +  L+
Sbjct: 25 FGAAVRALRVERGVAQETLAHQAGIERSHMGKIERGEHMPTLAIIFKIARTLGLSVAHLM 84


>gi|163867793|ref|YP_001608997.1| hypothetical protein Btr_0553 [Bartonella tribocorum CIP 105476]
 gi|161017444|emb|CAK01002.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476]
          Length = 217

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +RK+  LTQ ++  + G  Q  I  LE G+  +  +    LA  L    + LL P
Sbjct: 4  IKKLRKDLGLTQVKLAEKAGTTQPQIKRLEKGERKLTKEWAEKLAPHLGVKPFNLLFP 61


>gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
          23877]
          Length = 200

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R   +QS +S +E G+  + +D ++ +A  LDT L +L
Sbjct: 14 LVRKRIRALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARALDTTLDQL 73

Query: 81 LK 82
          ++
Sbjct: 74 VE 75


>gi|41179224|ref|NP_958562.1| putative repressor [Lactobacillus prophage Lj965]
 gi|42518381|ref|NP_964311.1| Lj965 prophage repressor [Lactobacillus johnsonii NCC 533]
 gi|38731494|gb|AAR27440.1| putative repressor [Lactobacillus prophage Lj965]
 gi|41582666|gb|AAS08277.1| Lj965 prophage repressor [Lactobacillus johnsonii NCC 533]
          Length = 117

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R+       N+R++  ++Q E+  +TG  ++ ++++E G   ++ D +  LA   +   
Sbjct: 4  DRITLAKKIINLREDRNMSQIELSEKTGIERTALNKIERGTRKVSSDELKALAKAFNISS 63

Query: 78 WKLL 81
            LL
Sbjct: 64 DSLL 67


>gi|148259597|ref|YP_001233724.1| hypothetical protein Acry_0581 [Acidiphilium cryptum JF-5]
 gi|326402804|ref|YP_004282885.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|146401278|gb|ABQ29805.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5]
 gi|325049665|dbj|BAJ80003.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 484

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          D  LRE  +F     R IR++  L Q++I  R G + S+++++E  +  +       L  
Sbjct: 6  DRPLREPKLFAGARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPRLAAPLCD 65

Query: 72 TLDTPLWKL 80
           L  PL +L
Sbjct: 66 LLGIPLAEL 74


>gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
          Length = 158

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++RK   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|327198606|ref|YP_004327350.1| phage repressor protein [Erwinia phage phiEt88]
 gi|311875300|emb|CBX44558.1| phage repressor protein [Erwinia phage phiEt88]
          Length = 236

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +  F    R  RK   L+QK + +  G +Q+ I +LE GKS  +      +A  L   
Sbjct: 2  KTTFAERLRVSRKNKGLSQKALGDLVGVSQANIQKLENGKSQ-STGYAAQIAEALGVS 58


>gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612]
 gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612]
          Length = 197

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +R +RKE  L+Q  +  R G +Q+ +S+ ET K+  +I+ +  LA         LL
Sbjct: 2  NKYRQLRKERNLSQANLAERLGVSQTAVSQWETDKNYPDINTIKQLADIYSVTTDYLL 59


>gi|237785704|ref|YP_002906409.1| HTH_3 family transcriptional regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758616|gb|ACR17866.1| transcriptional regulator, HTH_3 family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 145

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%)

Query: 14  AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
                R       R  R  A +T +E+ +    +  ++SE+E G+  ++ + +  + H L
Sbjct: 54  PEPLLRETLGEALRAFRVRASMTLRELSDVASVSPGYLSEIERGRKEVSSELLASVCHAL 113

Query: 74  DTPLWKLL 81
              +  +L
Sbjct: 114 GVRVSDVL 121


>gi|219855859|ref|YP_002472981.1| hypothetical protein CKR_2516 [Clostridium kluyveri NBRC 12016]
 gi|219569583|dbj|BAH07567.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 208

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N +NIRK+ +LT + +   T  + S + E+E G +   I  +  +A  L  P  
Sbjct: 29 KSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIPFT 88

Query: 79 KLL 81
           L+
Sbjct: 89 DLI 91


>gi|149921943|ref|ZP_01910386.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817205|gb|EDM76683.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 128

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +R  F  + +++R    +TQ+++  R G +   I  LE    + ++D +  L 
Sbjct: 11 EPDRHRFGKHVKSLRMARGMTQEQLAERAGLSADTIRRLEHAGFSPSLDTLFKLC 65


>gi|153955445|ref|YP_001396210.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348303|gb|EDK34839.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
          Length = 184

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N +NIRK+ +LT + +   T  + S + E+E G +   I  +  +A  L  P  
Sbjct: 5  KSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIPFT 64

Query: 79 KLL 81
           L+
Sbjct: 65 DLI 67


>gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC
          700755]
 gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC
          700755]
          Length = 247

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + IR    L+Q+         ++ +   E G+S   ID +I +A+     +   L
Sbjct: 4  FGKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSEPKIDTIIKVANYFSISIDDFL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|313899221|ref|ZP_07832739.1| cupin domain protein [Clostridium sp. HGF2]
 gi|312955982|gb|EFR37632.1| cupin domain protein [Clostridium sp. HGF2]
          Length = 177

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R +  LT +E+ +R+   + ++S++E   ++ ++  +  +   L T L    K
Sbjct: 4  GQKIRQLRTQNNLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLASFFK 63


>gi|302561872|ref|ZP_07314214.1| cro/CI family transcriptional regulator [Streptomyces
          griseoflavus Tu4000]
 gi|302479490|gb|EFL42583.1| cro/CI family transcriptional regulator [Streptomyces
          griseoflavus Tu4000]
          Length = 200

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  + ++E  ++  +I  ++ +   L   +  
Sbjct: 19 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSVTT 78

Query: 80 LL 81
          LL
Sbjct: 79 LL 80


>gi|262225381|ref|YP_003280872.1| pCQ3_23 [Streptomyces sp. W9]
 gi|261597557|gb|ACX85524.1| pCQ3_23 [Streptomyces sp. W9]
          Length = 417

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTI-N 62
          K  +P   D   R+R  F      +RK+  +TQ+++  +  G   SW+S++E G   I  
Sbjct: 3  KSSKPTGKDVDPRDRE-FGRRVAELRKDRGMTQQQLAAQLNGRTPSWMSQVERGIQPIRR 61

Query: 63 IDNMIILAHTLDTPLWKL 80
           D +  LA+ L      L
Sbjct: 62 FDLLRELANALGVSAQAL 79


>gi|254821249|ref|ZP_05226250.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950]
          Length = 116

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REVIGDVLREARTAQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDALDVPLS 65

Query: 79 KLLK 82
           +L 
Sbjct: 66 SVLT 69


>gi|224372182|ref|YP_002606554.1| helix-turn-helix protein [Nautilia profundicola AmH]
 gi|223588476|gb|ACM92212.1| helix-turn-helix protein [Nautilia profundicola AmH]
          Length = 272

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R+   L   E+ +R G A+S + ++E  K+   I+ +  +A  L  P  +
Sbjct: 1  MTLGEKIKFFRENKGLNLSELASRAGVAKSTLFKIEENKTNPTINTIWAIAEVLGVPFGE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|148378733|ref|YP_001253274.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          3502]
 gi|153932356|ref|YP_001383119.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|153934660|ref|YP_001386669.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288217|emb|CAL82286.1| immunity repressor protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152928400|gb|ABS33900.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|152930574|gb|ABS36073.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 140

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F   F+NIRKE  L+Q+++   +  + + IS +E+G+    + + +  +A  L     +L
Sbjct: 3  FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens]
 gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens]
          Length = 344

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  E      N +  RK+ KL+Q E+  + G A++ I   E  +   NI  ++ L+  ++
Sbjct: 2  IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMN 61

Query: 75 TPLWKLL 81
            +  LL
Sbjct: 62 RSIDSLL 68


>gi|116669150|ref|YP_830083.1| transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609259|gb|ABK01983.1| transcriptional regulator [Arthrobacter sp. FB24]
          Length = 495

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R+    P        + +      R++RK A +T  ++    G A S +S +E GK    
Sbjct: 8  RKAATPPSSPATAELDVISLGRRVRHLRKAAAMTLDDLSAAVGTAPSQLSLIENGKREPK 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  LA  L+  + +LL
Sbjct: 68 LGLLQQLAAALNVSIDQLL 86


>gi|326330019|ref|ZP_08196333.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1]
 gi|325952227|gb|EGD44253.1| putative DNA-binding protein [Nocardioidaceae bacterium Broad-1]
          Length = 106

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 25/74 (33%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P         R       R  R   + T  ++    G +  ++SE+E G+   + + +
Sbjct: 11 ALPDDDKPAPLWREAAGQVIREERSRQERTLADVAGDAGVSTQYLSEIERGRKEPSSEVL 70

Query: 67 IILAHTLDTPLWKL 80
            +   L   L  L
Sbjct: 71 EAVGGALGLGLVDL 84


>gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces
          griseoflavus Tu4000]
 gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces
          griseoflavus Tu4000]
          Length = 191

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRKE ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 10 VGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDELV 69


>gi|167567036|ref|ZP_02359952.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia oklahomensis EO147]
          Length = 191

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R+  KLT  E     G ++ ++S++E G++T +I +++ +A  L   +
Sbjct: 16 GIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTM 70


>gi|108797622|ref|YP_637819.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866709|ref|YP_936661.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433246|ref|YP_001068937.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768041|gb|ABG06763.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119692798|gb|ABL89871.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126233046|gb|ABN96446.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 161

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 29/58 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R+ R+ A+++ +++  + G +  ++S++E G    + D +  +A  L      L
Sbjct: 19 GSFIRSQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVL 76


>gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316]
 gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316]
          Length = 158

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5]
 gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5]
          Length = 545

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK   LTQKE+  + G     +S+ ETG    ++  +  LA  L+  + +LLK
Sbjct: 6  GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSVDELLK 65


>gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 103

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK   LTQ E+  R   ++  IS  E G S  +++ ++ +   L+T    LL
Sbjct: 6  FGEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLSYPSLETLVKICEILNTSSDYLL 65


>gi|317130529|ref|YP_004096811.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315475477|gb|ADU32080.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 264

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +RK   LTQ+++ +     +++ S++ETGK     D    +A+ LD
Sbjct: 8  KLRKSKGLTQEQVASAAFIDRAFFSQVETGKRNPGFDVAANIANVLD 54


>gi|239927456|ref|ZP_04684409.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 207

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P  ++    E  +     R +R+ A LT +      G + + +S LETG+   ++  ++
Sbjct: 5  SPSETEPPAGELPVVAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLL 64

Query: 68 ILAHTLDTPLWKLL 81
           LA T  T + +LL
Sbjct: 65 SLARTYGTTVSELL 78


>gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM
          15053]
 gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM
          15053]
          Length = 138

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R +RK+ KLTQK++      ++   S  ET K T ++D+++ LA   +  L  L+
Sbjct: 6  LANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFYNVNLDSLV 65


>gi|150378020|ref|YP_001314615.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150032567|gb|ABR64682.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 219

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 33 MAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLTTLQALSKALGVPLTA 92

Query: 80 LLK 82
            +
Sbjct: 93 FFR 95


>gi|120403388|ref|YP_953217.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119956206|gb|ABM13211.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 110

 Score = 52.3 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R E   T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REVIGDVLRRARVEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICGALDVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 RVL 68


>gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 91

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E++      + +R    +TQ+E+  R   ++S +  +E+GK T  +  M  +   L    
Sbjct: 2  EQLPIGQAIKALRLAQNMTQEELIERADLSRSQLYYIESGKRTPRLPTMQSICSALSVSF 61

Query: 78 WKLL 81
           + +
Sbjct: 62 LEFV 65


>gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641]
 gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641]
          Length = 158

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RK   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|303230899|ref|ZP_07317643.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
 gi|302514412|gb|EFL56410.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
          Length = 91

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 9  PHLSDAILRERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          P   ++ L+E+ +  +       R+ A LTQ+E+  R+G  QS I+ +E G    +ID +
Sbjct: 17 PQYKESYLKEKAMLASAVAITKAREAAGLTQRELAERSGVPQSTIARIERG-YNTSIDTL 75

Query: 67 IILAHTLDT 75
            +A  L+ 
Sbjct: 76 SKIAFALNK 84


>gi|300313367|ref|YP_003777459.1| hypothetical protein Hsero_4081 [Herbaspirillum seropedicae SmR1]
 gi|300076152|gb|ADJ65551.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 96

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F+   R  R+ A + Q E+    G  QS++S++ETG+  +++  +I     L      
Sbjct: 11 KLFLKQLREARESANVKQTELSEALGEYQSYVSKVETGERRLDVIELIAWCEALGVEADD 70

Query: 80 LLK 82
           +K
Sbjct: 71 FVK 73


>gi|296156511|ref|ZP_06839349.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893110|gb|EFG72890.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 285

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R+ R    ++Q ++  R G +Q  IS +E+G+S  +   ++ +A TLD PL +
Sbjct: 19 LRHWRDIRGISQLDLSFRAGVSQRHISFIESGRSAPSRQMLMDIAQTLDIPLRE 72


>gi|226362736|ref|YP_002780514.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226241221|dbj|BAH51569.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 206

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+  +LT  E+    G  + ++S++E   ++ ++  ++ +   L+ P+  L +
Sbjct: 19 GPRLKAARQAQRLTLDELAAGCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLFE 78


>gi|225180882|ref|ZP_03734330.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168363|gb|EEG77166.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
           AHT 1]
          Length = 255

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 30/55 (54%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            +  R +R+E  LT +E+      + +++SE+E G+ T +I  +  ++   + P+
Sbjct: 70  GDKLRAMREEKGLTLEELGRHLDLSVTYLSEIELGERTPSIQTLQKISRYFNVPI 124



 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   +TQK++ N    +   +++LETGK   ++  +  ++  L   +  L+
Sbjct: 138 GKKIRMTRETKGMTQKQLANAAQISPGLVAQLETGKVQPSLKTIERISKALSVSVCYLI 196


>gi|254509760|ref|ZP_05121827.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221533471|gb|EEE36459.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 172

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RK   LT  EI  + G +  W+S++E   S  +I ++  +A  L  P+  L 
Sbjct: 1  MRKARGLTLTEIAAKLGRSVGWLSQVERDMSAPSISDLRQIAECLGVPMSMLF 53


>gi|254489648|ref|ZP_05102850.1| transcriptional Regulator, XRE family with Cupin sensor domain
          [Roseobacter sp. GAI101]
 gi|214041818|gb|EEB82459.1| transcriptional Regulator, XRE family with Cupin sensor domain
          [Roseobacter sp. GAI101]
          Length = 189

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +  R  A+L+Q  +   +G ++  I  +ETG + I++ ++  LA  L      L+
Sbjct: 17 VSENLKVHRLAARLSQSALAEASGISRRMIVAVETGDANISLSSLDKLAAALGLTFTDLI 76

Query: 82 K 82
          +
Sbjct: 77 R 77


>gi|157362961|ref|YP_001469728.1| XRE family transcriptional regulator [Thermotoga lettingae TMO]
 gi|157313565|gb|ABV32664.1| putative transcriptional regulator, XRE family [Thermotoga
          lettingae TMO]
          Length = 131

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK+  LTQK++  + G +QS +S++ETG+  I+I  +  +     
Sbjct: 36 GGQLMAYRKKHNLTQKDLAKKLGISQSMVSKIETGEKNISIRVLTKIVAAFG 87


>gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 183

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q+ +  + G   S IS +E+G++  ++  +  +   +   L +  
Sbjct: 6  VGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEFF 65


>gi|21221318|ref|NP_627097.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|7635975|emb|CAB88810.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 281

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           S +I + R       R IRK+A LT +E+ +R G+ +S  S +E G++  + D++
Sbjct: 3  SSSSIQQARETLGKRLREIRKDAGLTARELASRAGWHESKCSRIENGRTPPSDDDL 58


>gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio
          brasiliensis LMG 20546]
 gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio
          brasiliensis LMG 20546]
          Length = 180

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR    L+Q+E+  R+G   S IS++E      ++ ++  +   +   + +  
Sbjct: 3  VGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEFF 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896]
          Length = 271

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N R +R+E   TQ+++  +   +   +S  E  +   ++DN+I L   LD  L  +++
Sbjct: 4  GMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLSAIVE 63


>gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 198

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+E  +T   +   TG ++S +S LE+G+    ++ ++ LA   D PL  L+
Sbjct: 20 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLV 79


>gi|259502238|ref|ZP_05745140.1| transcription regulator [Lactobacillus antri DSM 16041]
 gi|259169856|gb|EEW54351.1| transcription regulator [Lactobacillus antri DSM 16041]
          Length = 212

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R     TQ+E+  + G ++  IS  E G+S  +I  ++ L+      L  LL
Sbjct: 3  FAEKIKQYRAHNNWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYQISLDDLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|257055764|ref|YP_003133596.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256585636|gb|ACU96769.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 414

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLWKL 80
          F  N R IR     +   +    G + S++S +E G+  ++  ++I  LA  LD     +
Sbjct: 27 FGANLRRIRTARGKSLDVVAGLAGISPSYLSRIERGERALDRRSLIAALARALDVTPADI 86

Query: 81 LKP 83
          + P
Sbjct: 87 VGP 89


>gi|305682108|ref|ZP_07404912.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266]
 gi|305658581|gb|EFM48084.1| helix-turn-helix protein [Corynebacterium matruchotii ATCC 14266]
          Length = 274

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 34/53 (64%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+EA LTQ ++  R G  QS+IS+LE+G+ ++ ++ +  +A +L     +++ 
Sbjct: 18 REEAALTQSQLAQRLGKPQSFISKLESGERSLRVEELPQIAQSLGVSPLRIVT 70


>gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC
          43243]
          Length = 225

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++          R +A +TQKE+  + G +   IS+ E GKS  +I  +  L  +L   +
Sbjct: 2  DQEKIGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKSMPDITYLETLCDSLAISM 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 NELI 65


>gi|160914687|ref|ZP_02076901.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991]
 gi|158433227|gb|EDP11516.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991]
          Length = 313

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++   N R  RKE  L+Q+E+  +    +  IS+ ET  S  + D ++ +A  L   + +
Sbjct: 18 LMLNENIRKYRKECGLSQEEMAVKLHVVRQTISKWETNLSVPDADMLVEIAKLLQVSVEQ 77

Query: 80 LL 81
          LL
Sbjct: 78 LL 79


>gi|153955561|ref|YP_001396326.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855954|ref|YP_002473076.1| hypothetical protein CKR_2611 [Clostridium kluyveri NBRC 12016]
 gi|146348419|gb|EDK34955.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219569678|dbj|BAH07662.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 130

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  R +  L+QK++ +  G     IS+ E  K + ++ NM  +   L+    KL 
Sbjct: 3  GLNLKIERIKKGLSQKQLASMLGVTNQTISDYERCKISPSLSNMEKICKILNINPRKLF 61


>gi|75906669|ref|YP_320965.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700394|gb|ABA20070.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
           29413]
          Length = 529

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +++R        I     +        RK   L+Q+E+   TG +QSWI ++E G+    
Sbjct: 456 KKQRRTAKSRQKIKTAGDLVGEQILQARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAK 515

Query: 63  IDNMIILAHTLDT 75
           +++  +L   L  
Sbjct: 516 LEDQTLLRKVLHI 528


>gi|307352662|ref|YP_003893713.1| XRE family transcriptional regulator [Methanoplanus petrolearius
          DSM 11571]
 gi|307155895|gb|ADN35275.1| transcriptional regulator, XRE family [Methanoplanus petrolearius
          DSM 11571]
          Length = 83

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    +TQ+E+  +    +  I+ +E GK   +I+    +A     P+ K+ 
Sbjct: 8  NRIKVYRAMHDMTQEELAEKIRVTRKTINSIERGKYNPSIEVAFKIAKIFRVPVEKIF 65


>gi|221213964|ref|ZP_03586937.1| HTH-type transcriptional regulator PrtR (Pyocin repressor
          protein) [Burkholderia multivorans CGD1]
 gi|221166141|gb|EED98614.1| HTH-type transcriptional regulator PrtR (Pyocin repressor
          protein) [Burkholderia multivorans CGD1]
          Length = 257

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          IL       +  +  R +AKL+Q+ +  + G +Q  I ++E+GK+  +  ++  LA  L 
Sbjct: 14 ILASMETLGSRVKAARLDAKLSQEALARQVGVSQGLIGQIESGKNQGS-KHLAALARALG 72

Query: 75 TPLWKL 80
               L
Sbjct: 73 VSADWL 78


>gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium
          NOR51-B]
 gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium
          NOR51-B]
          Length = 219

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 31/66 (46%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
            ++ + +       + R++RK   +T  E+   +  +Q ++S++E G S  +I  +  +
Sbjct: 26 VDANKLAKTDRSLGLDIRDLRKARGMTLSELSKISELSQGYLSQVERGISVPSIKALHSI 85

Query: 70 AHTLDT 75
          +  L  
Sbjct: 86 SRALGV 91


>gi|126737704|ref|ZP_01753434.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126721097|gb|EBA17801.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 207

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E +      R +RK    T +   N+ G A+S +S++E G+ +   D +  LA  L  
Sbjct: 21 ETEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYDALKKLAIGLQI 80

Query: 76 PLWKLLKP 83
           + +L  P
Sbjct: 81 SVPQLFTP 88


>gi|14520527|ref|NP_126002.1| inosine-5'-monophosphate dehydrogenase-like protein I [Pyrococcus
          abyssi GE5]
 gi|5457743|emb|CAB49233.1| Predicted transcriptional regulator [Pyrococcus abyssi GE5]
          Length = 192

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          ++  R I   + + IRKE  +TQ+E+  + G  Q++I++LE GK    +     +   L
Sbjct: 2  VIIPRPIDPRDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60


>gi|114330045|ref|YP_746267.1| transcriptional regulator, XRE family protein [Nitrosomonas
          eutropha C91]
 gi|114307059|gb|ABI58302.1| transcriptional regulator, XRE family protein [Nitrosomonas
          eutropha C91]
          Length = 100

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R E  + Q+ + +  G  +S + ++E G+   N+  ++ +A  L+    +L+
Sbjct: 25 FGMAVRAARTELGIAQETLAHLAGIERSHMGKIERGEHMPNLAIILRIARALNKSASELI 84


>gi|172058586|ref|YP_001815046.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171991107|gb|ACB62029.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 139

 Score = 51.9 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +         +RK+ + TQK +  R G   + IS  E G+   N   +  LA  L+T + 
Sbjct: 2  KRALGKKIMQLRKQHQYTQKHLAERCGETVTSISAYERGQRMPNTQTLERLALALNTTVI 61

Query: 79 KLLKP 83
           L+ P
Sbjct: 62 DLIDP 66


>gi|330445605|ref|ZP_08309257.1| hypothetical protein PMSV_530 [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328489796|dbj|GAA03754.1| hypothetical protein PMSV_530 [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 47

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 40 IRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          + + TG ++S+IS +E G+  I++ N+  LA  L+  L +L K
Sbjct: 1  MADITGLSRSYISGIEQGERNISLSNINKLALGLNISLHELFK 43


>gi|291435798|ref|ZP_06575188.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338693|gb|EFE65649.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 204

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P  ++    E  +     R +R+ A LT +      G + + +S LETG+   ++  ++
Sbjct: 2  SPSETEPPAGELPVVAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPMLL 61

Query: 68 ILAHTLDTPLWKLL 81
           LA T  T + +LL
Sbjct: 62 SLARTYGTTVSELL 75


>gi|227508343|ref|ZP_03938392.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
 gi|227192161|gb|EEI72228.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
          Length = 209

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  +  R    LTQ  +  +   ++  +S  E G+S  N   +I L+      +  LL
Sbjct: 4  LANKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIKVDDLL 63

Query: 82 K 82
          K
Sbjct: 64 K 64


>gi|126726502|ref|ZP_01742343.1| DNA-binding protein, putative [Rhodobacterales bacterium
          HTCC2150]
 gi|126704365|gb|EBA03457.1| DNA-binding protein, putative [Rhodobacterales bacterium
          HTCC2150]
          Length = 207

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +    E +      R +RK+ + T ++  N  G A+S +S++E G+ +   D +  LA
Sbjct: 16 DGETANAEPLDLGARVRQLRKDRQWTLEQAANHAGLARSTLSKIENGQMSPTYDALKKLA 75

Query: 71 HTLDTPLWKLLK 82
            LD  + +L  
Sbjct: 76 LGLDISVPQLFT 87


>gi|330823701|ref|YP_004387004.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329309073|gb|AEB83488.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 77

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 37/60 (61%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R+ R   +L+Q+E+ +R G  +++I++LE  ++   +  ++ +A  L+ PL +L+
Sbjct: 11 FADELRSRRAALRLSQEELAHRAGINRTYIAKLELARNQPTLTVLLRVAEALEVPLPELI 70


>gi|319653368|ref|ZP_08007468.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2]
 gi|317394852|gb|EFV75590.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2]
          Length = 113

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R +   +  E+  +   ++S++S +E G +   ++  +  +A TLD  L  
Sbjct: 1  MIGGRIKTLRIKKGYSINELSEKAEVSKSYLSYIERGIQENPSLQVLSRIAKTLDANLED 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM
          12260]
 gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM
          12260]
          Length = 134

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R  RK   L QKE+  R G + +++S +E G+   ++D +   +  L  PL +L
Sbjct: 5  GSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLAEL 62


>gi|294139287|ref|YP_003555265.1| hypothetical protein SVI_0516 [Shewanella violacea DSS12]
 gi|293325756|dbj|BAJ00487.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 239

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R +   +Q E+    G  QS++S+LE  KS  + D    L   L   + +
Sbjct: 1  MTLGQQLKQFRVDRGFSQPELAELAGIEQSYLSKLENDKSIPSNDIFRALLKALTITVEE 60

Query: 80 LL 81
           +
Sbjct: 61 FI 62


>gi|237722444|ref|ZP_04552925.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448254|gb|EEO54045.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 100

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK+AK+TQ E+  R G  +S+IS +E+G++   +     + + L 
Sbjct: 40 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 91


>gi|254254772|ref|ZP_04948089.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158]
 gi|124899417|gb|EAY71260.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158]
          Length = 199

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L   + 
Sbjct: 17 RRSMTIRLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALGVDVE 76

Query: 79 KLL 81
          +L 
Sbjct: 77 QLF 79


>gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 127

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+EAK++Q E+ +  G  Q  +S  E G    ++D +  +A+     +  LL
Sbjct: 2  NRIKELREEAKISQAELASILGVTQQALSNYENGLREPDLDTINKIANYFGVSIDYLL 59


>gi|300172749|ref|YP_003771914.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG
          18811]
 gi|299887127|emb|CBL91095.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG
          18811]
          Length = 140

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     + IR++ K++Q+++      +   +S  E GK   +I N+I L+   D  L +
Sbjct: 1  MLIGEKIKIIREDRKISQEQMAKSLNVSGQAVSNWERGKGHPDISNIIRLSEIYDISLDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIR 63


>gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1]
 gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1]
          Length = 125

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                +R+    TQ  + ++ G  +  +S LE+GK  I+I+ +++    LD P+ ++L 
Sbjct: 18 GQRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPIEEILT 77


>gi|229080834|ref|ZP_04213352.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2]
 gi|228702568|gb|EEL55036.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2]
          Length = 262

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+  L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKKKGLSQEALAEKLSTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|225154906|ref|ZP_03723404.1| putative transcriptional regulator, XRE family [Opitutaceae
           bacterium TAV2]
 gi|224804436|gb|EEG22661.1| putative transcriptional regulator, XRE family [Opitutaceae
           bacterium TAV2]
          Length = 109

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 11  LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           L + I RE + F  N R  R    +TQ+++          +  +E G+    +  ++ + 
Sbjct: 33  LPNEIQRETVRFGANVRRERVARAITQEKLSEMADMDIRTLQRIEAGEINPLLATVLRIQ 92

Query: 71  HTLDTPLWKLLKP 83
             L+ P  KL+ P
Sbjct: 93  RALNCPWEKLMPP 105


>gi|167580827|ref|ZP_02373701.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
          Length = 278

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     +   +  R+  ++S IS +E  +S+     +  LA+ L   L  L
Sbjct: 6  LIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLASL 65

Query: 81 LK 82
           +
Sbjct: 66 FE 67


>gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 183

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q+ +  + G   S IS +E+G++  ++  +  +   +   L +  
Sbjct: 6  VGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEFF 65


>gi|146299497|ref|YP_001194088.1| helix-turn-helix domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146153915|gb|ABQ04769.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101]
          Length = 493

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF    + +R +  L+   +   T  ++S+++E+E GK     D +++L   LD    
Sbjct: 9  KLIFGLKLKQVRTQKNLSLFGLAKLTNLSKSYLNEIEKGKKYPKTDKILLLCEHLDVTYD 68

Query: 79 KLL 81
          +++
Sbjct: 69 QMV 71


>gi|90020028|ref|YP_525855.1| transcriptional regulator [Saccharophagus degradans 2-40]
 gi|89949628|gb|ABD79643.1| transcriptional regulator [Saccharophagus degradans 2-40]
          Length = 184

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 32/58 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RN R+    + + + +R+G ++S I+++E+ + +  +  +  LA  +   L  L++P
Sbjct: 10 IRNYRQTNGESLQALADRSGVSRSMIAQIESNQKSPTVTTLAKLAGAMSISLGDLVEP 67


>gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5]
 gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5]
          Length = 182

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RKE  ++Q+E+    G ++  +S+ E   +  + +N+I L   L+  L  
Sbjct: 1  MTLGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTIPDTENVIQLGKILEVSLDY 60

Query: 80 LLKP 83
          LLKP
Sbjct: 61 LLKP 64


>gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 331

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI       +RK+   +Q+E+  + G ++  +S+ E+G S  +++ ++ L+         
Sbjct: 1  MILAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSIPDLERILKLSQVFGVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|210620982|ref|ZP_03292367.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM
          13275]
 gi|210154966|gb|EEA85972.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM
          13275]
          Length = 204

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 31/55 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R + ++T K++  +T  +  ++S+LE G +++  D++  +A  L+  L
Sbjct: 6  GAKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDL 60


>gi|331091961|ref|ZP_08340793.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330402860|gb|EGG82427.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 133

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 35/69 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           A+ +E +I  N  R  RKE + +Q+ +  ++G + + IS +E G+  +++  +  +   
Sbjct: 4  RAVSQELIILGNRIRECRKEREFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQKIVKA 63

Query: 73 LDTPLWKLL 81
          L      LL
Sbjct: 64 LGVDANTLL 72


>gi|326384730|ref|ZP_08206407.1| helix-turn-helix domain protein [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326196538|gb|EGD53735.1| helix-turn-helix domain protein [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 265

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R  R+  +L+Q ++ NR G +   +S +E G+S    D +  LA  LD PL +
Sbjct: 11 GPQLRRWRQHRQLSQLQLSNRAGVSTRHLSWVENGRSRPTRDMIERLAGHLDVPLRE 67


>gi|313886599|ref|ZP_07820312.1| DNA-binding helix-turn-helix protein [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|312923955|gb|EFR34751.1| DNA-binding helix-turn-helix protein [Porphyromonas
          asaccharolytica PR426713P-I]
          Length = 363

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R  R    +T +E+ ++ G + + IS LE G   I    +I L+  LD P+
Sbjct: 14 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPI 68


>gi|302557107|ref|ZP_07309449.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
 gi|302474725|gb|EFL37818.1| DNA-binding protein [Streptomyces griseoflavus Tu4000]
          Length = 212

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LT +      G + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 24 VAPQLRALRRRASLTLEAAARDAGLSPAHLSRLETGQRQPSLPTLLSLARTYGTTVSELL 83


>gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM
          15641]
 gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM
          15641]
          Length = 197

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R+ A L+Q+++  +   ++  +S+ E  +++ + DN+I LA      + +LL
Sbjct: 6  AKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEASPDTDNLIALALLYGITVDELL 64


>gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7]
 gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7]
          Length = 138

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ RK+  L+Q+++ +R   ++  +S+ E+  +  NID ++ +A  L+  L +
Sbjct: 1  MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
          Length = 141

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK  + TQ+E+  +   ++  I++ E+G+S  +I + I LA   +  L  L
Sbjct: 1  MINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758]
 gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  +S+ E G S  +   +IILA+ L+T + +L
Sbjct: 1  MLNENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVPDSSMLIILANELNTTVSEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia
          multivorans ATCC 17616]
 gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia
          multivorans ATCC 17616]
          Length = 246

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
               R+ R+E  L+Q ++  R G +Q+ I+ +E+G++  +  +++ +A  L   P W
Sbjct: 4  LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQGS-KHLLSIARALGVNPAW 60


>gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555]
 gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555]
          Length = 100

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +++R   KLT  ++    G  + ++S LE    + + + +  L   L+  L +
Sbjct: 1  MQFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNAKSPSFELLEKLCGALNITLAE 60

Query: 80 LLK 82
            K
Sbjct: 61 FFK 63


>gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 190

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+E  +T   +   TG ++S +S LE+G+    ++ ++ LA   D PL  L+
Sbjct: 12 VGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIYDVPLDDLV 71


>gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 210

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  RK+  ++Q E+ ++ G  Q  + + E+GKS+ +   +  +A  L+T    
Sbjct: 1  MSFSELLKQCRKKQGISQAELASKLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|253579357|ref|ZP_04856627.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849455|gb|EES77415.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 68

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E++   N+ + +R EA L+Q ++    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKEQLQLKNHLKEVRTEANLSQAQLAEMVGISRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|225378376|ref|ZP_03755597.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans
          DSM 16841]
 gi|225209813|gb|EEG92167.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans
          DSM 16841]
          Length = 118

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  RKE K+ Q E+      + + +S  E G+   ++D  I +   L+     LL
Sbjct: 9  GTRIKVRRKELKIKQAELAEALEISNNHMSSTENGRQKPSLDTFIGICRCLNVTPDYLL 67


>gi|239627441|ref|ZP_04670472.1| BcrR [Clostridiales bacterium 1_7_47_FAA]
 gi|239517587|gb|EEQ57453.1| BcrR [Clostridiales bacterium 1_7_47FAA]
          Length = 204

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R    LTQ+++  +   +++ IS+ E GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLRQLRIGKNLTQEQLAEQLYVSRTAISKWEGGKGYPNIESLKCISKFFSITIDELL 62


>gi|170721531|ref|YP_001749219.1| helix-turn-helix domain-containing protein [Pseudomonas putida
          W619]
 gi|169759534|gb|ACA72850.1| helix-turn-helix domain protein [Pseudomonas putida W619]
          Length = 91

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R +R    LTQ++    +  +++++S LE G  +  I  +  LA  +     
Sbjct: 4  RESLGEALRRMRILHDLTQEDFAVVS--SRTYVSSLERGLKSPTIQKIEELAGRMGIHPL 61

Query: 79 KLL 81
           L+
Sbjct: 62 SLI 64


>gi|302535844|ref|ZP_07288186.1| DNA-binding protein [Streptomyces sp. C]
 gi|302444739|gb|EFL16555.1| DNA-binding protein [Streptomyces sp. C]
          Length = 145

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R++A+L+ +++ +  G +  ++S++E G    + D +  LA  L      L
Sbjct: 15 LGEYLREQRRQAQLSLRQLADAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 73


>gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
          1003]
 gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
          1003]
          Length = 184

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R +RK   LT K +    G +  W+S++E G++T ++ ++ +LA  L   L 
Sbjct: 2  RHHVGDDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTLS 61

Query: 79 KLLK 82
             +
Sbjct: 62 FFFR 65


>gi|253578759|ref|ZP_04856030.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849702|gb|EES77661.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 98

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DA+  E  I      + R +  +TQK++  +TG  Q+ IS +E G    ++  +  LA  
Sbjct: 22 DALQPEYDII-QAMIDARVQQNMTQKDLSAKTGITQADISRIENGTRNPSLSMVKKLAQG 80

Query: 73 LDTPLWKLLKP 83
          L   L     P
Sbjct: 81 LGMQLKLEFVP 91


>gi|227509640|ref|ZP_03939689.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227191002|gb|EEI71069.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 198

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R IR E   +  ++   +G ++  +S++E   ++  I+ +  +   L+ P   L
Sbjct: 16 IVSTNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTAL 75

Query: 81 LK 82
          L+
Sbjct: 76 LE 77


>gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 130

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|163839462|ref|YP_001623868.1| Cro/CI family transcriptional regulator [Renibacterium
          salmoninarum ATCC 33209]
 gi|162952938|gb|ABY22453.1| transcriptional regulator, Cro/CI family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 200

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +        R  A L+  E   R G A+S +S+LE+G    +++ +  +   L+    
Sbjct: 23 RELVAAGLIRERARAGLSLSETARRAGIAKSTLSQLESGVGNPSVETLWAICTALEISFS 82

Query: 79 KLLKP 83
          +L+ P
Sbjct: 83 RLVDP 87


>gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 130

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110]
          Length = 210

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           +D P +      ++ +     R +R+ A L+ +++ N+TG +   IS+LE  ++  +I 
Sbjct: 10 PKDAPTIETDDAVDQRL-GETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIR 68

Query: 65 NMIILAHTLDTPL 77
           + +L+  LD P+
Sbjct: 69 TLRLLSIALDVPI 81


>gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 190

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+ ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 10 VGPRLRRLRKDREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIAQAHQVPLDELV 69


>gi|228475837|ref|ZP_04060551.1| DNA-binding protein [Staphylococcus hominis SK119]
 gi|314937266|ref|ZP_07844610.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80]
 gi|228270113|gb|EEK11573.1| DNA-binding protein [Staphylococcus hominis SK119]
 gi|313654620|gb|EFS18368.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80]
          Length = 118

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  +  RK    +Q E+ +    ++  +S+ E+GK+  ++D +++++      L +L+
Sbjct: 3  LANVIKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|154252608|ref|YP_001413432.1| helix-turn-helix domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156558|gb|ABS63775.1| helix-turn-helix domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 126

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           P      P     I   R +  +  R  R    L+Q+E+ +  G  + ++SELE GK+T+
Sbjct: 47  PLATSTSPKPETPIQSFRNL-GDLVRTARITKDLSQQELADMAGVGRRFVSELENGKATL 105

Query: 62  NIDNMIILAHTLDTPLW 78
            I  ++ +   L   L 
Sbjct: 106 EIGRVLKVCQALGVDLV 122


>gi|114765327|ref|ZP_01444444.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114542307|gb|EAU45336.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 206

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T ++     G A+S +S++E G+ +   D +  LA  L   + +L 
Sbjct: 26 LGARVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALKKLAVGLGIGVPQLF 85

Query: 82 KP 83
           P
Sbjct: 86 TP 87


>gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533]
 gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533]
          Length = 161

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  LTQ+E+  +    +  IS  E  ++  + + +I++A T    L +L+
Sbjct: 3  FNEQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRNLPDFEIIILIAETFGVSLDELI 62


>gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 122

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    +  R E  +TQ+ I    G + S IS+ E   ++ ++D++  L+  L   + +L
Sbjct: 7  FGARLKKYRNEKNITQERIAKILGVSNSMISKYENNTASPSLDSLCTLSKELCVSIDEL 65


>gi|284046640|ref|YP_003396980.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283950861|gb|ADB53605.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 88

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++  I  E        R +R    L+Q+++   +   ++++  +E G+       ++ L 
Sbjct: 1  MAAPISPEHRALGRAVRELRVRRGLSQEQLGMASEIHRNYVGAIERGEINPTFRVLLKLE 60

Query: 71 HTLDTPLWKLLK 82
            LD  L +LL+
Sbjct: 61 RGLDLSLSRLLE 72


>gi|260597676|ref|YP_003210247.1| DNA-binding transcriptional repressor PuuR [Cronobacter
          turicensis z3032]
 gi|260216853|emb|CBA30375.1| HTH-type transcriptional regulator puuR [Cronobacter turicensis
          z3032]
          Length = 185

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+ +   +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|255655872|ref|ZP_05401281.1| putative phage repressor [Clostridium difficile QCD-23m63]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|255306892|ref|ZP_05351063.1| putative phage repressor [Clostridium difficile ATCC 43255]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|209521228|ref|ZP_03269950.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209498341|gb|EDZ98474.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 195

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     +   +  R+  ++S IS +E G+S+     +  LA  L+ PL  L
Sbjct: 6  LIARRIRELRDAQAWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASL 65

Query: 81 LK 82
           +
Sbjct: 66 FE 67


>gi|189499174|ref|YP_001958644.1| transcriptional regulator, XRE family [Chlorobium
          phaeobacteroides BS1]
 gi|189494615|gb|ACE03163.1| transcriptional regulator, XRE family [Chlorobium
          phaeobacteroides BS1]
          Length = 69

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
          E+ I   N +  R +  ++Q  +  R   A   I+++E G +    ID +  +A  L   
Sbjct: 4  EKSIISGNIKKYRNKLGISQDVLSKRADLAFHTIAKIEAGATPNPTIDTVKKIADALGVS 63

Query: 77 LWKLLK 82
          L  L+K
Sbjct: 64 LDVLMK 69


>gi|156934250|ref|YP_001438166.1| DNA-binding transcriptional repressor PuuR [Cronobacter sakazakii
          ATCC BAA-894]
 gi|156532504|gb|ABU77330.1| hypothetical protein ESA_02080 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 185

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+ +   +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630]
 gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42]
 gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26]
 gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932]
 gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55]
 gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34]
 gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79]
 gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196]
 gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291]
 gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58]
 gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196]
 gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|78044139|ref|YP_360516.1| prophage LambdaCh01, PBSX family transcriptional regulator
          [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996254|gb|ABB15153.1| prophage LambdaCh01, transcriptional regulator, PBSX family
          [Carboxydothermus hydrogenoformans Z-2901]
          Length = 76

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  + +RK   LTQ E+  + G ++S+  ++E G   +++   + +A  L      L  P
Sbjct: 2  NKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAILKVTPNDLFLP 61


>gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 130

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F    + +R E  L+QKEI N  G  ++  ++ ETGKS  + D +  LA      +  
Sbjct: 1  MLFNEIIKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes
          WB4]
 gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes
          WB4]
          Length = 186

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R++  L+Q+E+  + G     I  +E  +S    + M ++   LD     +L
Sbjct: 5  GEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESEPRGNTMHLICKVLDIHAEDIL 63


>gi|289826007|ref|ZP_06545166.1| hypothetical protein Salmonellentericaenterica_11630 [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 182

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   +    R++  L+  EI  R G A+S +S+LE G    +++ +  L   LD PL
Sbjct: 7  VIARSLVRERQQTGLSLAEIARRAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPL 63


>gi|260062047|ref|YP_003195127.1| hypothetical protein RB2501_10657 [Robiginitalea biformata
          HTCC2501]
 gi|88783609|gb|EAR14780.1| hypothetical protein RB2501_10657 [Robiginitalea biformata
          HTCC2501]
          Length = 605

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N    RK+  L+Q+E+  +T      I  +E G    ++  + +LA  L   +  
Sbjct: 1  MTLGENLIYQRKKQGLSQEELAGKTQVTVRTIQRIEKGDVNPHLQTVKLLAAALSVEVED 60

Query: 80 LL 81
          L+
Sbjct: 61 LM 62


>gi|124265218|ref|YP_001019222.1| putative DNA-binding protein [Methylibium petroleiphilum PM1]
 gi|124257993|gb|ABM92987.1| putative DNA-binding protein [Methylibium petroleiphilum PM1]
          Length = 81

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R++ + +Q+ + +R    +S++ E+E G +  ++  M  LA  LD  L  LL
Sbjct: 8  FGRVVRQHREQRRWSQELLAHRAEINRSYLGEVERGDAVPSLATMSKLATALDVRLSSLL 67


>gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA]
          Length = 67

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ R  RKE  ++Q+E+  + G ++  ++ +E  K    +     LA  L T +  L KP
Sbjct: 3  NSIRERRKERGISQEELAGKCGVSRQTVNAIENNKYDPTLALAFHLAQELGTTVDGLFKP 62


>gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC
          29799]
 gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC
          29799]
          Length = 297

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++RKE  +TQKE+ ++       +S+ E G     I  +  LA  L   +  L+
Sbjct: 7  GQLIRDLRKEKGMTQKELADKLHITDRAVSKWERGLCAPEISLLEPLAEALGCSVLDLM 65


>gi|153003797|ref|YP_001378122.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5]
 gi|152027370|gb|ABS25138.1| transcriptional regulator, XRE family [Anaeromyxobacter sp.
           Fw109-5]
          Length = 224

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +   N R +R +  L+ + + + +G +++ + ++E G+S   I+ +  ++  L  P   L
Sbjct: 43  VVGANLRRLRNQRGLSLERLSHLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSAL 102

Query: 81  LK 82
           + 
Sbjct: 103 IT 104


>gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
 gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B]
          Length = 244

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E        R +RK   LT +++ +  G +++ +SE E+G+S  + + +++LA  L T
Sbjct: 1  MTEAQHIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHT 60

Query: 76 PLWKLL 81
           +  LL
Sbjct: 61 AVEYLL 66


>gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus
          metallidurans CH34]
 gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix
          motif [Cupriavidus metallidurans CH34]
          Length = 203

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R+  +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 21 VGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 80


>gi|326803107|ref|YP_004320925.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326650673|gb|AEA00856.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 85

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M   + D       I R++     +     IR+E  L+Q ++ + +G  QS+IS +E+ +
Sbjct: 1  MDTHREDLSLDEKNIARQQASIKASDVLLKIRQEKGLSQAQLADISGRKQSYISRVESRQ 60

Query: 59 STINIDNMIILAHTLD 74
            I++  +  + + + 
Sbjct: 61 QNISLGTLQEIVNAVG 76


>gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 220

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+   LT  ++    G +   +S++E G+ + ++ ++  LA  L+ P+  L 
Sbjct: 37 LGVQIRSLRRHLDLTVADLAAAAGISTGMLSKIENGQISPSLASLQALAGALNVPITALF 96


>gi|282855783|ref|ZP_06265089.1| transcriptional regulator, XRE family [Pyramidobacter piscolens
          W5455]
 gi|282586415|gb|EFB91677.1| transcriptional regulator, XRE family [Pyramidobacter piscolens
          W5455]
          Length = 95

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R++  +TQK++   TG  Q  IS LE G+   ++  +  LA  L   L
Sbjct: 36 EARRKKNVTQKQLAEMTGITQPDISRLENGRGNPSLRTLNNLAKGLGMAL 85


>gi|312194132|ref|YP_004014193.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311225468|gb|ADP78323.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 419

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R++R+ A L+Q+E+  RTG + S + ++E G S   ++ + +LA  L      L 
Sbjct: 11 NLRDLRRTAGLSQEELAGRTGLSVSTVRKVEQGGS-ARVETLHVLARALGVETSALF 66


>gi|225374624|ref|ZP_03751845.1| hypothetical protein ROSEINA2194_00240 [Roseburia inulinivorans
          DSM 16841]
 gi|225213534|gb|EEG95888.1| hypothetical protein ROSEINA2194_00240 [Roseburia inulinivorans
          DSM 16841]
          Length = 114

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N R  R+   +TQ E+  R   +   I  +E G+  +++D  + + H L++    
Sbjct: 9  KIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSPMV 68

Query: 80 LL 81
          L+
Sbjct: 69 LM 70


>gi|326405603|gb|ADZ62674.1| transcriptional regulator [Lactococcus lactis subsp. lactis CV56]
          Length = 185

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   N +  R   KLTQ+E+     F++  IS  E+ K+  N + +I LA   ++ L
Sbjct: 1  MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKAEPNFETLIALAELYESDL 57


>gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum
          H04402 065]
          Length = 130

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
          11664]
 gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
          11664]
          Length = 143

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 33/70 (47%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                 M        +R + K +Q+++  +   ++  +S+ E+G++  ++D +I+L+  
Sbjct: 7  KLSEVTSMNLNQKITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTKPDLDKIIVLSEI 66

Query: 73 LDTPLWKLLK 82
           +     LLK
Sbjct: 67 FNVSTDYLLK 76


>gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 141

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LTQKE+    G  +S +   E G  T + D +  +A ++      L+
Sbjct: 3  VGERIRALRRSAGLTQKELAASIGLTESAVRNYELGLRTPSDDQLAAMADSIGVAPEALM 62


>gi|224535505|ref|ZP_03676044.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224522872|gb|EEF91977.1| hypothetical protein BACCELL_00369 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 69

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R         IRK   L+Q ++   T  A   I+ +ETG+ +  ID +  +A  L   L
Sbjct: 5  DRERIGKRIAEIRKSKGLSQAKLAELTDIAPGNIARIETGRYSTGIDLLSKIADALGYKL 64


>gi|261405075|ref|YP_003241316.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|329929544|ref|ZP_08283268.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|261281538|gb|ACX63509.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
 gi|328936269|gb|EGG32718.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 65

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q+E+    G ++  I  +E GK   ++   + +   L   L  L 
Sbjct: 5  KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLF 61


>gi|170756150|ref|YP_001780099.1| hypothetical protein CLD_0298 [Clostridium botulinum B1 str.
          Okra]
 gi|169121362|gb|ACA45198.1| conserved domain protein [Clostridium botulinum B1 str. Okra]
          Length = 65

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++ +  G  +  I  +E GK   +++  I +   L+  L  L 
Sbjct: 4  KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKVLNKTLNDLF 61


>gi|163761507|ref|ZP_02168579.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica
          DFL-43]
 gi|162281221|gb|EDQ31520.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica
          DFL-43]
          Length = 480

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +R R +F     R IR E  LTQ     + G + S+++++E  +  ++   ++ LA    
Sbjct: 1  MRARKLFIGGKIRAIRGEQGLTQAGFATKLGISTSYLNQIENNQRHVSASVLLALAEAFS 60

Query: 75 TPLWKL 80
            +  L
Sbjct: 61 VDITTL 66


>gi|121587112|ref|ZP_01676888.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80]
 gi|153803456|ref|ZP_01958042.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3]
 gi|153827548|ref|ZP_01980215.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2]
 gi|153829053|ref|ZP_01981720.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39]
 gi|229514757|ref|ZP_04404218.1| hypothetical protein VCB_002409 [Vibrio cholerae TMA 21]
 gi|229527755|ref|ZP_04417146.1| hypothetical protein VCG_000827 [Vibrio cholerae 12129(1)]
 gi|254225954|ref|ZP_04919555.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V51]
 gi|254284909|ref|ZP_04959875.1| transcriptional regulator, HTH_3 family [Vibrio cholerae
          AM-19226]
 gi|261212794|ref|ZP_05927078.1| predicted transcriptional regulator [Vibrio sp. RC341]
 gi|262189992|ref|ZP_06048298.1| predicted transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|297579612|ref|ZP_06941539.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|121548648|gb|EAX58698.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80]
 gi|124121006|gb|EAY39749.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3]
 gi|125621488|gb|EAZ49821.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V51]
 gi|148875482|gb|EDL73617.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39]
 gi|149738481|gb|EDM52877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2]
 gi|150424912|gb|EDN16689.1| transcriptional regulator, HTH_3 family [Vibrio cholerae
          AM-19226]
 gi|229334117|gb|EEN99602.1| hypothetical protein VCG_000827 [Vibrio cholerae 12129(1)]
 gi|229348737|gb|EEO13695.1| hypothetical protein VCB_002409 [Vibrio cholerae TMA 21]
 gi|260837859|gb|EEX64536.1| predicted transcriptional regulator [Vibrio sp. RC341]
 gi|262034133|gb|EEY52567.1| predicted transcriptional regulator [Vibrio cholerae CT 5369-93]
 gi|297535258|gb|EFH74092.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 207

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
          Length = 253

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQK++  +   +   +S+ E G S  N+  +I +A  LD  + +LL
Sbjct: 9  FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 68

Query: 82 K 82
          +
Sbjct: 69 R 69


>gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 253

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQK++  +   +   +S+ E G S  N+  +I +A  LD  + +LL
Sbjct: 9  FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 68

Query: 82 K 82
          +
Sbjct: 69 R 69


>gi|282915693|ref|ZP_06323464.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus D139]
 gi|282320509|gb|EFB50848.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus D139]
          Length = 143

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69
          M F    +  R   KL+ KE+   +G +Q++IS+LE GK    +++ +  L
Sbjct: 1  MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNL 51


>gi|300024625|ref|YP_003757236.1| XRE family transcriptional regulator [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299526446|gb|ADJ24915.1| transcriptional regulator, XRE family [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 217

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R+ RK+A LT  E+      +   +S++E G+ + ++  + +LA  L+ PL  L 
Sbjct: 37 GHQVRHHRKQAGLTVAELAVAAQISPGMLSKIENGQISPSLSTLQMLAAALNVPLTVLF 95


>gi|221141220|ref|ZP_03565713.1| SaPI1 Orf22 [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|282922345|ref|ZP_06330036.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|304381556|ref|ZP_07364206.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|269940394|emb|CBI48771.1| pathogenicity island DNA-binding protein [Staphylococcus aureus
          subsp. aureus TW20]
 gi|282593471|gb|EFB98466.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|302750721|gb|ADL64898.1| Helix-turn-helix XRE-family like protein [Staphylococcus aureus
          subsp. aureus str. JKD6008]
 gi|304339919|gb|EFM05863.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
          Length = 244

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69
          M F    +  R   KL+ KE+   +G +Q++IS+LE GK    +++ +  L
Sbjct: 1  MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNL 51


>gi|169333659|ref|ZP_02860852.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259653|gb|EDS73619.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 129

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + IRK  + TQ+ +      + S  S +E G +  +++ +I + + L+  + ++L
Sbjct: 9  GNRLKEIRKRERYTQENVAEFADISTSHYSHIENGTTKPSLNTLIRIVNVLNVSMDEVL 67


>gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1]
 gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1]
          Length = 260

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQK++  +   +   +S+ E G S  N+  +I +A  LD  + +LL
Sbjct: 16 FGLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 75

Query: 82 K 82
          +
Sbjct: 76 R 76


>gi|153939354|ref|YP_001390095.1| putative DNA-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|168178129|ref|ZP_02612793.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|152935250|gb|ABS40748.1| putative DNA-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|182670365|gb|EDT82339.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|295318188|gb|ADF98565.1| putative DNA-binding protein [Clostridium botulinum F str.
          230613]
          Length = 140

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F   F+NIRKE  L+Q+++   +  + + IS +E+G+    + + +  +A  L     +L
Sbjct: 3  FGEFFKNIRKEKGLSQRQLAELSHISNTEISRIESGERQNPSPNILKSIAPHLGISYGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|108799092|ref|YP_639289.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868207|ref|YP_938159.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126434698|ref|YP_001070389.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108769511|gb|ABG08233.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119694296|gb|ABL91369.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126234498|gb|ABN97898.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 104

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REVIGDVLRRARTSQGRTLREVSDTARVSLGYLSEVERGRKEASSELLSAICGALDVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 QVL 68


>gi|18266759|gb|AAC28967.2| orf22 [Staphylococcus aureus]
          Length = 247

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69
          M F    +  R   KL+ KE+   +G +Q++IS+LE GK    +++ +  L
Sbjct: 4  MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNL 54


>gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
 gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum
          ATCC 23726]
          Length = 209

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IR+E  L+  ++   +  ++S ++++E G+    +  +  +A+ +      L
Sbjct: 34 LVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTL 93

Query: 81 L 81
          +
Sbjct: 94 I 94


>gi|291543302|emb|CBL16411.1| Helix-turn-helix [Ruminococcus sp. 18P13]
          Length = 121

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R++R +  ++Q E+  +   +   +SE+E GK+ + +   + +   L      
Sbjct: 10 KAIGARIRDVRLQRNMSQAELAEKAFISVPHMSEVENGKTKLRLSTFVYITEALQVSADV 69

Query: 80 LLK 82
          LL+
Sbjct: 70 LLR 72


>gi|260576097|ref|ZP_05844091.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
 gi|259021796|gb|EEW25098.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
          Length = 228

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + + R+     +  R IRK   LTQ+ + +  G     I ++E+G+    +  +  LA  
Sbjct: 2  ETMERDAKYIADQCRYIRKMFGLTQENLADAAGLTVRTIQKVESGRHMPEVQTLRSLARG 61

Query: 73 LDTPLWKLLKP 83
          L   +   L+P
Sbjct: 62 LGFDMAVFLRP 72


>gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27]
 gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
 gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27]
          Length = 182

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IR+E  L+  ++   +  ++S ++++E G+    +  +  +A+ +      L
Sbjct: 7  LVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens
          DSM 30120]
 gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens
          DSM 30120]
          Length = 214

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
           I     ++IR+   L+Q ++    G++  S I   E G+  I+ D+ ++++  L     
Sbjct: 6  EIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVSPA 65

Query: 79 KLL 81
          +L+
Sbjct: 66 ELM 68


>gi|154499841|ref|ZP_02037879.1| hypothetical protein BACCAP_03498 [Bacteroides capillosus ATCC
          29799]
 gi|150271439|gb|EDM98696.1| hypothetical protein BACCAP_03498 [Bacteroides capillosus ATCC
          29799]
          Length = 67

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 29/53 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R  R E  ++Q ++      +Q +I+E+E+G+   ++D ++ +   L+  ++
Sbjct: 8  IRQKRTEKGISQGKLAELVHVSQPFIAEIESGRKKPSLDVLMRICDALEISMF 60


>gi|149921925|ref|ZP_01910368.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149817187|gb|EDM76665.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 111

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + R +RK   L+Q+ +  R G +   I  LE G  + +++ ++ LA  L   L  +L
Sbjct: 12 FGKHLRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTFSPSLNTLVGLATGLGLRLSTIL 71


>gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
 gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum
          subsp. polymorphum ATCC 10953]
          Length = 182

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IR+E  L+  ++   +  ++S ++++E G+    +  +  +A+ +      L
Sbjct: 7  LVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSFNTL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|124010294|ref|ZP_01694946.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla
          marina ATCC 23134]
 gi|123983628|gb|EAY24073.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla
          marina ATCC 23134]
          Length = 121

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R+  KL+QKE+       QS  S++E GK+      +  +   L+  + +L 
Sbjct: 4  GDKIKKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNIEVAELF 62


>gi|114564581|ref|YP_752095.1| transcriptional regulator, XRE family protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114335874|gb|ABI73256.1| transcriptional regulator, XRE family protein [Shewanella
          frigidimarina NCIMB 400]
          Length = 68

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R+ RK   ++Q ++       +S+   +E G+  I ++    LA  L   + +LL
Sbjct: 8  FGAKLRDKRKTLGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCDVRELL 67


>gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M334]
 gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M334]
          Length = 158

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ +     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein
          [Micromonospora aurantiaca ATCC 27029]
 gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5]
 gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5]
          Length = 214

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RKE  LT + + +R+G +  ++S++E G S+I +  +  +A  LD  +   
Sbjct: 27 VVGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALGSVAKALDRSVADF 86

Query: 81 L 81
           
Sbjct: 87 F 87


>gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 169

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  R    +  +S+ E G S  + D +I L+  L+TP+  L
Sbjct: 1  MLSENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans
          DSM 16841]
 gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans
          DSM 16841]
          Length = 110

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +     +  R+E  +TQ+ I N      S IS +E G++  ++  +I +A+ L 
Sbjct: 7  KVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRANPSLTALIKIANILS 61


>gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
 gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
          Length = 158

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|153217261|ref|ZP_01951025.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587]
 gi|124113716|gb|EAY32536.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587]
          Length = 207

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|159898456|ref|YP_001544703.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159891495|gb|ABX04575.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 80

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          I  N  R +R    ++TQ ++  R G  +  I+ +E GK    ++    +AH    PL +
Sbjct: 5  ILSNRIRLLRFINGEMTQADLGQRIGVTRQTIAAIEAGKYAPTLEAAFRIAHVFQVPLDE 64

Query: 80 LLK 82
          + +
Sbjct: 65 VFQ 67


>gi|91780025|ref|YP_555233.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91692685|gb|ABE35883.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 98

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+      R  R+   ++Q  +      +++++S LE GK T  +D +  +A  +     
Sbjct: 4  RLGLARGLRAARRMRGISQDGLGVS---SRTYLSALELGKQTPTLDKLDEIARAIGVHPL 60

Query: 79 KLL 81
           +L
Sbjct: 61 SVL 63


>gi|24213211|ref|NP_710692.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45658873|ref|YP_002959.1| hypothetical protein LIC13047 [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|24193932|gb|AAN47710.1| transcriptional regulator [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45602118|gb|AAS71596.1| conserved hypothetical protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 98

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE  IF  N    RK +KLTQ E+  R G  QS+IS++E+G+  +++     +   L   
Sbjct: 8  REAKIFCKNLIAARKNSKLTQLEVAKRLGEPQSYISKIESGERRLDVIEFWRIFKILGKS 67

Query: 77 L 77
          +
Sbjct: 68 I 68


>gi|319652442|ref|ZP_08006558.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2]
 gi|317395904|gb|EFV76626.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2]
          Length = 181

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +++R +   T KE+  RT  + S++S++E G +++ I ++  +A  L+  + +  +
Sbjct: 6  KKIKDLRLQKGYTLKELSERTELSISFLSQVERGATSLAITSLKKIADALNVKISEFFE 64


>gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidases) [Faecalibacterium prausnitzii SL3/3]
          Length = 210

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  RK+  ++Q E+ +R G  Q  + + E+GKS+ +   +  +A  L+T    
Sbjct: 1  MSFSELLKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 221

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  LT   +  R+G ++S IS +E G+S+     +  LA  L   L  L 
Sbjct: 32 LATRLRALRADRGLTLDSLSERSGVSRSMISLVERGESSPTASVLDRLAAGLGVTLATLF 91


>gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733]
 gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733]
          Length = 149

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R  F    + +RKE   TQ+E+  +    +  +S  E G+S  + +N+  LA      L
Sbjct: 2  RDFFPKKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTL 60


>gi|229162632|ref|ZP_04290592.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          R309803]
 gi|228620895|gb|EEK77761.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          R309803]
          Length = 117

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N + +RK   LTQ+++ +    +++ I+  E      +++ ++ ++   + PL  
Sbjct: 5  EVFAQNLKELRKSRGLTQEQLGSELNLSRNQINNYENKLFEPSMETLLQISSFFNVPLDT 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|296137961|ref|YP_003645204.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296026095|gb|ADG76865.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 108

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E  +       R ++    R  R     T  E+    G +  ++SE+E G+   + + + 
Sbjct: 15 EAQVPPRPPLLREVYGRVLRQERTRQGRTLAEVAREAGVSTQYLSEVERGRKEASSEVLS 74

Query: 68 ILAHTLDTPLWKLL 81
           +   L   L + +
Sbjct: 75 SVCDALGGSLIEFV 88


>gi|206973491|ref|ZP_03234411.1| conserved domain protein [Bacillus cereus AH1134]
 gi|229181778|ref|ZP_04309089.1| Transcriptional regulator [Bacillus cereus 172560W]
 gi|206731581|gb|EDZ48783.1| conserved domain protein [Bacillus cereus AH1134]
 gi|228601695|gb|EEK59205.1| Transcriptional regulator [Bacillus cereus 172560W]
          Length = 65

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R E  LTQ+E+ +     +  IS +E+ K   ++   I +A TLD  L KL 
Sbjct: 4  SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLF 61


>gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium
          prausnitzii M21/2]
          Length = 210

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  RK+  ++Q E+ +R G  Q  + + E+GKS+ +   +  +A  L+T    
Sbjct: 1  MSFSELLKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC
          29799]
 gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC
          29799]
          Length = 267

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +RK+  L+Q+ +  +    +  IS+ E G+S  ++D +  L+   +     
Sbjct: 1  MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFNVSSDY 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|116617253|ref|YP_817624.1| XRE-family DNA-binding domain-containing protein [Leuconostoc
          mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096100|gb|ABJ61251.1| XRE-family DNA-binding domain and ATPase component of ABC
          transporter [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
          Length = 296

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF      +R++  L+Q+ I  +   ++  +S+ E G +  +ID +I LA      L  L
Sbjct: 4  IFSYQLNMLRQKKSLSQEIIAQKLYVSRQSVSKWERGDAEPDIDKLIALADIFGVDLNYL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 204

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+  LTQ+++  +   +++ +S+ E+GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKGYPNIESLKCISKVFAVSIDELL 62


>gi|227522811|ref|ZP_03952860.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227090012|gb|EEI25324.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 198

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R IR E   +  ++   +G ++  +S++E   ++  I+ +  +   L  P   L
Sbjct: 16 IVSKNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLSVPYTAL 75

Query: 81 LK 82
          L+
Sbjct: 76 LE 77


>gi|196044748|ref|ZP_03111982.1| transcriptional regulator, XRE family [Bacillus cereus 03BB108]
 gi|196024236|gb|EDX62909.1| transcriptional regulator, XRE family [Bacillus cereus 03BB108]
          Length = 81

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R +  ++Q+ +   +G  +++IS LE GK    I+ +  + + L     +++
Sbjct: 7  FGIVLQKERIKQNISQETLAFNSGLDRTYISLLERGKRKPTINTVFSVTYALKLEPHEII 66


>gi|254249607|ref|ZP_04942927.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124876108|gb|EAY66098.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 195

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 19 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 75


>gi|282167199|ref|YP_003358063.1| TrbA [Burkholderia cepacia]
 gi|70779365|gb|AAZ08145.1| TrbA [Burkholderia cepacia]
          Length = 107

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +T+ ++  + G + S++S+L  GK+  ++  M  +A  L  PL  LL+
Sbjct: 1  MTKHDLAEKAGMSISFLSDLTNGKANPSLKIMGSIADALSVPLPTLLE 48


>gi|53720319|ref|YP_109305.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|167817109|ref|ZP_02448789.1| putative DNA-binding protein [Burkholderia pseudomallei 91]
 gi|237813540|ref|YP_002897991.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|254299001|ref|ZP_04966451.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|52210733|emb|CAH36717.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|157809113|gb|EDO86283.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|237503057|gb|ACQ95375.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
          Length = 195

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  L +
Sbjct: 8  ARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFE 67


>gi|328956484|ref|YP_004373870.1| conserved hypothetical protein; possible transcriptional
          regulator A [Carnobacterium sp. 17-4]
 gi|328672808|gb|AEB28854.1| conserved hypothetical protein; possible transcriptional
          regulator A [Carnobacterium sp. 17-4]
          Length = 172

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     +  R   + +Q ++      ++  IS+ E G S  ++DN+  L+   D  + +
Sbjct: 1  MVLGERLKQSRMNKRYSQGDVAKHLHISRQSISKWENGNSYPDLDNLAKLSTYYDVSIDE 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 222

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +   +  R  R +  +   E+   TG   S IS++E    + +I  +  +   ++ P+  
Sbjct: 12 LTLGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKKICDAMNIPISF 71

Query: 80 LL 81
          L 
Sbjct: 72 LF 73


>gi|294628187|ref|ZP_06706747.1| cro/CI family transcriptional regulator [Streptomyces sp. e14]
 gi|292831520|gb|EFF89869.1| cro/CI family transcriptional regulator [Streptomyces sp. e14]
          Length = 201

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  + ++E  ++  ++  ++ +   L   +  
Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 79

Query: 80 LL 81
          LL
Sbjct: 80 LL 81


>gi|240147502|ref|ZP_04746103.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257200308|gb|EEU98592.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 114

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N R  R+   +TQ E+  R   +   I  +E G+  +++D  + + H L++    
Sbjct: 9  EIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSPTV 68

Query: 80 LL 81
          L+
Sbjct: 69 LM 70


>gi|296123145|ref|YP_003630923.1| cupin [Planctomyces limnophilus DSM 3776]
 gi|296015485|gb|ADG68724.1| Cupin 2 conserved barrel domain protein [Planctomyces limnophilus
          DSM 3776]
          Length = 189

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R + +LT  ++ +RTG  +SW S++E  + T ++ ++  +A  L   +  L+
Sbjct: 6  LAQRIKNHRIDQRLTLDQVASRTGLTRSWWSKVENFRITPSLQSLGQIAAALGVSVSDLV 65

Query: 82 K 82
          +
Sbjct: 66 E 66


>gi|210620597|ref|ZP_03292145.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM
          13275]
 gi|210155311|gb|EEA86317.1| hypothetical protein CLOHIR_00088 [Clostridium hiranonis DSM
          13275]
          Length = 71

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D++  E  I        RKE  +TQK++   TG  Q+ IS  E G    ++  +  LA  
Sbjct: 3  DSLEPEYQIV-RAILESRKETGITQKQLAEITGINQADISRYENGSGNPSLKTLKRLAEG 61

Query: 73 LDTPL 77
          +   L
Sbjct: 62 MGKTL 66


>gi|126727939|ref|ZP_01743764.1| DNA-binding protein, putative [Rhodobacterales bacterium
          HTCC2150]
 gi|126702770|gb|EBA01878.1| DNA-binding protein, putative [Rhodobacterales bacterium
          HTCC2150]
          Length = 211

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  RK+  +T  E+   T  +   +S++E G ++ ++  +  LA+ L  PL    +
Sbjct: 25 GREVRAYRKQQNITVAELSGLTELSIGMLSKIENGNTSPSLSTLQTLANALAVPLTAFFR 84


>gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 208

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 31 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 90

Query: 82 KP 83
           P
Sbjct: 91 AP 92


>gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684]
 gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str.
          CNEVA-9066]
 gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger
          B]
 gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684]
          Length = 92

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|332141631|ref|YP_004427369.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|332143443|ref|YP_004429181.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327551653|gb|AEA98371.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
 gi|327553465|gb|AEB00184.1| Transcriptional Regulator, XRE family protein [Alteromonas
          macleodii str. 'Deep ecotype']
          Length = 106

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + R  R     +Q+E+  R+G  QS IS++E+G   + I ++I LA  LD  L  L+ P
Sbjct: 10 ESLREARVRKGFSQRELSARSGVPQSHISKIESGGVDLRISSLIALARVLDLEL--LVAP 67


>gi|325846936|ref|ZP_08169793.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481178|gb|EGC84222.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 241

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F       RKE  +TQK+I  +   +   +S+ E GKS  +I  ++ LA  LD  L 
Sbjct: 6  KKDFGEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLV 65

Query: 79 KLLK 82
           LL+
Sbjct: 66 NLLE 69


>gi|323352799|ref|ZP_08087769.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|322121835|gb|EFX93581.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|325688158|gb|EGD30177.1| transcriptional regulator [Streptococcus sanguinis SK72]
 gi|325694179|gb|EGD36097.1| transcriptional regulator [Streptococcus sanguinis SK150]
 gi|327469090|gb|EGF14562.1| transcriptional regulator [Streptococcus sanguinis SK330]
 gi|328945639|gb|EGG39790.1| transcriptional regulator [Streptococcus sanguinis SK1087]
 gi|332363393|gb|EGJ41178.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 65

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++ +  G  +  I  +E GK   ++   + +   L+  L +L 
Sbjct: 6  RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62


>gi|322386886|ref|ZP_08060510.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
 gi|321269168|gb|EFX52104.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
          Length = 65

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++ +  G  +  I  +E GK   ++   + +   L+  L +L 
Sbjct: 6  RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62


>gi|300857891|ref|YP_003782874.1| HTH_3 family transcriptional regulator [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685345|gb|ADK28267.1| HTH_3-family transcription regulator [Corynebacterium
          pseudotuberculosis FRC41]
          Length = 145

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78
            R +RK   L+Q  +   +  +++ IS LE  +++        +  +  LA  L  P  
Sbjct: 18 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 77

Query: 79 KLL 81
           LL
Sbjct: 78 VLL 80


>gi|259417056|ref|ZP_05740975.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
 gi|259345962|gb|EEW57776.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
          Length = 187

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R+IR  A L+       TG +++ + ++E G+S+  I  +  +A     PL  L++
Sbjct: 9  NLRDIRASAGLSLSRAAEITGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALIE 66


>gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC
          14672]
 gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC
          14672]
 gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC
          14672]
          Length = 509

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1]
 gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia
          glumae BGR1]
          Length = 191

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 32/66 (48%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          SD             R +R+  KLT  E+    G ++ ++S++E G++T ++ ++  +A 
Sbjct: 5  SDESTSAAAAIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRATPSLASLAGIAR 64

Query: 72 TLDTPL 77
           L   +
Sbjct: 65 ALGVTM 70


>gi|197121330|ref|YP_002133281.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171179|gb|ACG72152.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 192

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R +  L+ +++   +G +++ + ++E G+S   I+ +  ++  L  P   L
Sbjct: 11 VVGGNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSAL 70

Query: 81 LK 82
          + 
Sbjct: 71 IT 72


>gi|262164343|ref|ZP_06032081.1| predicted transcriptional regulator [Vibrio mimicus VM223]
 gi|262026723|gb|EEY45390.1| predicted transcriptional regulator [Vibrio mimicus VM223]
          Length = 207

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|290962090|ref|YP_003493272.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260651616|emb|CBG74740.1| putative transcriptional regulatory protein [Streptomyces scabiei
          87.22]
          Length = 190

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   + +R G ++  + ++E  ++  +I  ++ +   L   +  
Sbjct: 9  QSLARNVKRWRTERGFTLDALASRAGVSRGMLIQIEQARTNPSIGTVVKIGDALGVSITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|239814566|ref|YP_002943476.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801143|gb|ACS18210.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 262

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +    P      L +R  F +  R  RK    T  ++  R+G + + IS  E G+  +  
Sbjct: 26  KPGTRPKDEAPTL-DRTTFGHRLRAARKRFGWTLAQLAERSGVSITTISRAERGQLALGY 84

Query: 64  DNMIILAHTLDTPLWKLL 81
           +N   L   L+  +  + 
Sbjct: 85  ENFTALGRALEMDMNAMF 102


>gi|163800499|ref|ZP_02194400.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. AND4]
 gi|159175942|gb|EDP60736.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. AND4]
          Length = 207

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA+ L   +
Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLANGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|149920439|ref|ZP_01908908.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149818754|gb|EDM78197.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 199

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++  LT K++  RT  + S +S++E  +S+ ++ ++  +A+ LD  + +L 
Sbjct: 138 GKRIREVRRQRSLTLKQMGRRTNLSVSLLSQIERAESSASVSSLFKIANALDVRISELF 196


>gi|295105951|emb|CBL03494.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 71

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 36/67 (53%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           ++R+      R+ R+   L+Q ++    G ++S I  +E+G+ ++ +D++  +A  LD 
Sbjct: 4  EQKRLRLGAAIRDRREAQGLSQHKLALMVGSSKSHIWRIESGRVSVGLDDLGRIADALDI 63

Query: 76 PLWKLLK 82
           + +L  
Sbjct: 64 EVRQLFT 70


>gi|284041803|ref|YP_003392143.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283946024|gb|ADB48768.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 201

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R++   +Q ++    G ++  +  LE  ++  N+  +  +   LD    +
Sbjct: 8  EALARTVRAARRQRGWSQDQLSAHAGISKGALVALERAETNPNLSTLCRIGDALDLNAAQ 67

Query: 80 LLK 82
          LL+
Sbjct: 68 LLE 70


>gi|228963418|ref|ZP_04124579.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228796312|gb|EEM43759.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 117

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N + +RK   LTQ+++  +   +++ I+  E      +++ ++ ++   D  L  
Sbjct: 5  EVFGQNLKKLRKSKDLTQEQLGEQLNLSRNQINNYENAMFEPSMETLLQISSFFDVSLDL 64

Query: 80 L 80
          L
Sbjct: 65 L 65


>gi|218134629|ref|ZP_03463433.1| hypothetical protein BACPEC_02532 [Bacteroides pectinophilus ATCC
          43243]
 gi|225374660|ref|ZP_03751881.1| hypothetical protein ROSEINA2194_00280 [Roseburia inulinivorans
          DSM 16841]
 gi|240147249|ref|ZP_04745850.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|260438263|ref|ZP_05792079.1| toxin-antitoxin system, antitoxin component, Xre family
          [Butyrivibrio crossotus DSM 2876]
 gi|217990014|gb|EEC56025.1| hypothetical protein BACPEC_02532 [Bacteroides pectinophilus ATCC
          43243]
 gi|225213484|gb|EEG95838.1| hypothetical protein ROSEINA2194_00280 [Roseburia inulinivorans
          DSM 16841]
 gi|257200566|gb|EEU98850.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|291539893|emb|CBL13004.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Roseburia intestinalis XB6B4]
 gi|292809283|gb|EFF68488.1| toxin-antitoxin system, antitoxin component, Xre family
          [Butyrivibrio crossotus DSM 2876]
          Length = 114

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N R  R+   +TQ E+  R   +   I  +E G+  +++D  + + H L++    
Sbjct: 9  EIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSPMV 68

Query: 80 LL 81
          L+
Sbjct: 69 LM 70


>gi|167563856|ref|ZP_02356772.1| DNA-binding protein [Burkholderia oklahomensis EO147]
 gi|167570993|ref|ZP_02363867.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 195

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S+     +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|157690862|ref|YP_001485324.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157679620|gb|ABV60764.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 77

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+ ++    R  RK    TQ+    R G + S + E+E G        +  +A  L+  +
Sbjct: 2  EKDVWGRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVGQIADALNITV 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|160887565|ref|ZP_02068568.1| hypothetical protein BACOVA_05585 [Bacteroides ovatus ATCC 8483]
 gi|237715793|ref|ZP_04546274.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|260171168|ref|ZP_05757580.1| hypothetical protein BacD2_04816 [Bacteroides sp. D2]
 gi|262407409|ref|ZP_06083957.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647505|ref|ZP_06725086.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CC 2a]
 gi|294807470|ref|ZP_06766273.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides xylanisolvens SD CC 1b]
 gi|298482028|ref|ZP_07000217.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. D22]
 gi|315919486|ref|ZP_07915726.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107976|gb|EDO09721.1| hypothetical protein BACOVA_05585 [Bacteroides ovatus ATCC 8483]
 gi|229443440|gb|EEO49231.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354217|gb|EEZ03309.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637165|gb|EFF55602.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CC 2a]
 gi|294445365|gb|EFG14029.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides xylanisolvens SD CC 1b]
 gi|295087452|emb|CBK68975.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Bacteroides xylanisolvens XB1A]
 gi|298271892|gb|EFI13464.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. D22]
 gi|313693361|gb|EFS30196.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 100

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK+AK+TQ E+  R G  +S+IS +E+G++   +     + + L 
Sbjct: 40 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 91


>gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
          Length = 191

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 11 VGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELV 70


>gi|325962304|ref|YP_004240210.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468391|gb|ADX72076.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 191

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P     +        +  R  R+  +LT +++ + TG  + ++S +E   ++ ++ +
Sbjct: 2  KALPVEPSNVPVA---IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58

Query: 66 MIILAHTLDTPLWKLL 81
          ++ L   L   +  L 
Sbjct: 59 LVTLCQVLSISIGDLF 74


>gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M334]
 gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M334]
          Length = 110

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +   + +RKE KLTQK+I      +Q    + E+GK  +N++ M  LA   +     L
Sbjct: 1  MIIERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 199

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +R+   L+  E+   +G +++ IS++E  +S+     +  LA  L   L +L
Sbjct: 18 LIATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQSSPTAVLLGRLAAGLGVSLAQL 77

Query: 81 LK 82
          L 
Sbjct: 78 LT 79


>gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 106

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R  A +TQ+++  R    ++ IS  E  +   + + +I +A         LL
Sbjct: 4  FGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYLL 63


>gi|163814737|ref|ZP_02206126.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC
          27759]
 gi|158450372|gb|EDP27367.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC
          27759]
          Length = 108

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP--- 76
          MI     +  RK   LTQ+E+         +IS LE+GKS  ++  ++ L+  L      
Sbjct: 10 MIIGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLVQLSRALKCTCDY 69

Query: 77 -LWKLLKP 83
           LW +  P
Sbjct: 70 FLWDMDVP 77


>gi|149203543|ref|ZP_01880513.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
 gi|149143376|gb|EDM31415.1| DNA-binding protein, putative [Roseovarius sp. TM1035]
          Length = 190

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +RK   LT   +    G +  W+S++E   S  +I ++  +A  L  P+  L 
Sbjct: 12 LGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSLLF 71


>gi|120401822|ref|YP_951651.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119954640|gb|ABM11645.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 176

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R  R+ A+++ +++  + G +  ++S++E G    + D +  +A  L      L
Sbjct: 19 GSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVL 76


>gi|45656179|ref|YP_000265.1| hypothetical protein LIC10275 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45599413|gb|AAS68902.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 104

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                E   F N     R EA LTQ ++    G  QS+IS++E+G+  I       +  T
Sbjct: 44  KISEEEWESFFNRLTTARIEANLTQAQVAKSLGKYQSYISKIESGEKKIVYGRFCQIIQT 103

Query: 73  L 73
           L
Sbjct: 104 L 104


>gi|312198778|ref|YP_004018839.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311230114|gb|ADP82969.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 200

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + R +R++  LT  ++  +   +  ++S+LE G +  ++ ++  LA  L T    L+
Sbjct: 20 GRSIRVLRRQQGLTLVQLATKAELSHPFLSQLERGLARPSMASLHRLAQALGTTQPALM 78


>gi|213692935|ref|YP_002323521.1| transcriptional regulator, XRE family [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|213524396|gb|ACJ53143.1| transcriptional regulator, XRE family [Bifidobacterium longum
          subsp. infantis ATCC 15697]
 gi|320459113|dbj|BAJ69734.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 187

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILA 70
          + +I+R       + R+ R    LTQ  +  +TG  + WI++LE GK    ++  ++ L 
Sbjct: 3  ASSIIRSPRQLAISLRDARIAKGLTQTALAQQTGLGRPWINQLEQGKIENASLSRILALC 62

Query: 71 HTLDT 75
          + L+ 
Sbjct: 63 NALEV 67


>gi|78060929|ref|YP_370837.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968814|gb|ABB10193.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia sp. 383]
          Length = 180

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60


>gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 158

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ +     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|32473937|ref|NP_866931.1| transcription regulator [Rhodopirellula baltica SH 1]
 gi|32444474|emb|CAD74472.1| probable transcription regulator [Rhodopirellula baltica SH 1]
          Length = 233

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R +  +T  E+  ++G  +SW+S +E  + T ++  +  LA +L      LL
Sbjct: 55  LAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSLL 114

Query: 82  K 82
           +
Sbjct: 115 E 115


>gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045]
 gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045]
          Length = 229

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 5   KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           + D P   D       +     R IRKE   T   +   TG + S +S LE+G    +++
Sbjct: 32  RDDVPGSDDTDEVLAEV-GPRLRRIRKERGATLAALSEATGISVSTLSRLESGLRKPSLE 90

Query: 65  NMIILAHTLDTPLWKLL 81
            ++ +A     PL +L+
Sbjct: 91  LLLPIARAHQVPLDELV 107


>gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
 gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
          Length = 188

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I     R +R    L+Q+ +  + G   S +S +E+G+++ ++ ++  L       L
Sbjct: 8  EENIIGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRTSPSVGSLKRLLDAAGISL 67

Query: 78 WKLL 81
              
Sbjct: 68 GDFF 71


>gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 192

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T  E+ + TG + S +S LE+G+    ++ ++ LA     PL +L+
Sbjct: 11 VGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQRRPTLELLLPLARAHQVPLDELV 70


>gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 194

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+A L+Q+++  +   ++  IS  E  KS  +I ++I LA+     L +L+
Sbjct: 3  LGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFQLSLDQLV 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp.
          3_2_56FAA]
 gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp.
          3_2_56FAA]
          Length = 302

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 38/62 (61%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +++R++AK++Q+++  +   ++  +++ ETG    +I+N+  +A   D  + +L
Sbjct: 1  MFSTKLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDEL 60

Query: 81 LK 82
          L+
Sbjct: 61 LE 62


>gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
          Length = 158

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|311070727|ref|YP_003975650.1| putative transcriptional regulator [Bacillus atrophaeus 1942]
 gi|310871244|gb|ADP34719.1| putative transcriptional regulator [Bacillus atrophaeus 1942]
          Length = 72

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I+    R  RK    TQ+      G + S + E+E G    +   +  +A  L+   
Sbjct: 2  EAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSPAIIKDVADALNISA 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 EELAPP 67


>gi|284048419|ref|YP_003398758.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
 gi|283952640|gb|ADB47443.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
          Length = 97

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R    LTQKE+  + G AQ+ IS +E G    ++  +  LA  +   L    +P
Sbjct: 37 ARINQHLTQKELAAKAGIAQTEISRIENGTRNPSLKILQRLAEGMGMVLKISFEP 91


>gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891]
 gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891]
          Length = 180

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR    L+Q+E+  R+G   S IS++E      ++ ++  +   +   + +  
Sbjct: 3  VGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEFF 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|167564668|ref|ZP_02357584.1| DNA-binding protein [Burkholderia oklahomensis EO147]
          Length = 200

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82


>gi|111026150|ref|YP_708433.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110824993|gb|ABH00275.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 378

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +D     R+   +     RK   +T   + + +G +   +S+ E GK   + D +  LA 
Sbjct: 5  ADMGEANRVFVSSRLTAARKRRGVTITALSSESGLSTKSLSDFENGKKDPSQDTLDRLAQ 64

Query: 72 TLDTPLWKLLKP 83
           L       L+P
Sbjct: 65 ALKVRSNYFLRP 76


>gi|42525598|ref|NP_970696.1| DNA-binding protein [Treponema denticola ATCC 35405]
 gi|41815609|gb|AAS10577.1| DNA-binding protein [Treponema denticola ATCC 35405]
          Length = 191

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +RK   ++ +++    G + S++S LE  K +++I N+  +A      L   L 
Sbjct: 6  GSKIRALRKVRSISLQQMAKDLGMSYSYLSGLENDKYSVSITNLQKIASYFKVNLVSFLT 65

Query: 83 P 83
          P
Sbjct: 66 P 66


>gi|311897650|dbj|BAJ30058.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 201

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R  ++LT +    R G + +++S LETG+   ++  ++ LA    T + +LL
Sbjct: 15 LGARLRERRVSSRLTLEVAAARVGLSPAYLSRLETGRRQPSLPVLLGLARAYGTSVAELL 74


>gi|294679084|ref|YP_003579694.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
           1003]
 gi|294477900|gb|ADE87287.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
           1003]
          Length = 114

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R  R    LTQ  +  ++G  +  ++E+ETG+   +I  +  LA  L   L  L
Sbjct: 58  LRVYRDLRGLTQAALAEKSGVNRVTVAEIETGRKQGSIATLRALADALGVSLDDL 112


>gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 370

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +    N  N+RKE  +TQ+ +    G  ++ +S+ ETG+S  ++  +  LA   D  +
Sbjct: 2  EELSLSKNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 187

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    +T  ++   TG ++S +S LE G+   N++ ++ L+   D P+  L+
Sbjct: 11 VGPRLRALRTRRGITLADLSAETGISESTLSRLENGQRRANLELLLPLSRAYDVPIDDLV 70


>gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876]
 gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876]
          Length = 118

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I       +RKE KLTQ++I    G ++  IS+ E G    + +N+  LA   + P   L
Sbjct: 3  IIGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTDYL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|188992517|ref|YP_001904527.1| hypothetical protein xccb100_3122 [Xanthomonas campestris pv.
          campestris str. B100]
 gi|167734277|emb|CAP52487.1| hypothetical protein predicted by Glimmer/Critica [Xanthomonas
          campestris pv. campestris]
          Length = 128

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIIL 69
          A    R I     R  R+   L+Q+E+  R G     A + IS  E+G  +I+++ +  +
Sbjct: 4  ATPAPREIVAARLRQARERQGLSQREVGMRMGLDKDTASARISRYESGAMSISLEALFEM 63

Query: 70 AHTLDTPLWKLL 81
          A  L+ P   LL
Sbjct: 64 AEALEVPPAFLL 75


>gi|91780942|ref|YP_556149.1| anaerobic benzoate catabolism transcriptional regulator
          [Burkholderia xenovorans LB400]
 gi|91693602|gb|ABE36799.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Burkholderia xenovorans LB400]
          Length = 323

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          SD +L E        R +R +  +T+K++  ++G +   ++ +E+G+  +++  +  L+ 
Sbjct: 20 SDPVLSE---LARRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSV 76

Query: 72 TLDTPLWKLL 81
           L+ P+  LL
Sbjct: 77 ALNLPIQDLL 86


>gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM
          11293]
 gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae
          DSM 11293]
          Length = 132

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           ++     N R+ RK   L+Q  +  + G +   I + E G S+I+   +  +A  L  P
Sbjct: 3  PDKSTIGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVP 62

Query: 77 L 77
          +
Sbjct: 63 I 63


>gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus
          pneumoniae 670-6B]
 gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae]
 gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B]
          Length = 158

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 153

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    +   +R+E  LTQ+++  R    +  +S  ETG++   +D   ++A T D PL +
Sbjct: 1  MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|257869343|ref|ZP_05648996.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257803507|gb|EEV32329.1| predicted protein [Enterococcus gallinarum EG2]
          Length = 110

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
          M F  N +  R+E +L   ++  ++G + + IS  E GK  T ++D    LA  L  PL 
Sbjct: 1  MSFGENLKKFREEKQLGVNQLALKSGVSAAQISRFENGKRKTPHVDTAKKLAKALSVPLP 60

Query: 79 KLL 81
           L+
Sbjct: 61 LLI 63


>gi|220911740|ref|YP_002487049.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219858618|gb|ACL38960.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 191

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P     +        +  R  R+  +LT +++ + TG  + ++S +E   ++ ++ +
Sbjct: 2  KALPVEPSNVPVA---IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58

Query: 66 MIILAHTLDTPLWKLL 81
          ++ L   L   +  L 
Sbjct: 59 LVTLCQVLSISIGDLF 74


>gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 118

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RK     Q ++    G  +  IS  E G  T N+D+++ L   L     +LL
Sbjct: 9  GVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67


>gi|291541946|emb|CBL15056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 64

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+++      ++  IS +E G     I+  I +   LD  L +L 
Sbjct: 5  RLKSARAAKDLSQQQLAELVKVSRQTISAIEKGDYNPTINLCIAICKALDKTLDELF 61


>gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 504

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R        +A   + +      R++RK A LT  ++    G + S +S  E GK    +
Sbjct: 18 RSEPIRTEQNAGAPDPLTIGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKL 77

Query: 64 DNMIILAHTLDTPLWKLL 81
            +  LA  L T L +LL
Sbjct: 78 SLLTTLAGVLGTDLGELL 95


>gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 181

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IRKE ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 2  GPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 60


>gi|237668636|ref|ZP_04528620.1| transcriptional regulator [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|237656984|gb|EEP54540.1| transcriptional regulator [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 183

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +NIRK  K++   +  +TG ++S + ++E G+S   +  +  +   L      L+
Sbjct: 11 NLKNIRKSKKMSLDVVSEQTGVSKSMLGQIERGESNPTVAILGKIVSGLRVSFNDLV 67


>gi|229148196|ref|ZP_04276499.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|228635208|gb|EEK91735.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
          Length = 115

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N + +RK   LTQ+++  RTG ++  I   ET +   +++++ +LA   +T   
Sbjct: 2  KTTVGQNIKQLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|225873288|ref|YP_002754747.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
 gi|225792943|gb|ACO33033.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
          Length = 128

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+IR   KL+Q+++  R    +++IS++E GK+   + ++  LA  L+  +  LL
Sbjct: 16 VARAVRDIRLGRKLSQRQLATRMQVPRTYISKIENGKAVPTLSSLERLAEALEVNICALL 75

Query: 82 K 82
          +
Sbjct: 76 Q 76


>gi|94972481|ref|YP_595699.1| hypothetical protein LIC083 [Lawsonia intracellularis PHE/MN1-00]
 gi|94732018|emb|CAJ54035.1| NA [Lawsonia intracellularis PHE/MN1-00]
          Length = 108

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 26 FRNIRKEAK--LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R IR + K  +    +   +G  + +I  +E G+  I + N+  LA+ LD P+ +L++
Sbjct: 13 IRAIRTKHKDEIVLDRLAELSGLTKRYIQMIERGERNITVINLFPLANALDIPIIQLIE 71


>gi|72161202|ref|YP_288859.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71914934|gb|AAZ54836.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 119

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R +R+    T +E+      +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 6  RHLLGDVLRQLRQRQGRTLREVSADARVSLGYLSEVERGQKEASSELLASICGALGVPLS 65

Query: 79 KLLK 82
          ++L+
Sbjct: 66 QVLR 69


>gi|15671987|ref|NP_266161.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|281490504|ref|YP_003352484.1| transcriptional regulator [Lactococcus lactis subsp. lactis
          KF147]
 gi|12722841|gb|AAK04103.1|AE006240_1 transcriptional regulator [Lactococcus lactis subsp. lactis
          Il1403]
 gi|281374322|gb|ADA63855.1| Transcriptional regulator [Lactococcus lactis subsp. lactis
          KF147]
          Length = 185

 Score = 51.9 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   N +  R   KLTQ+E+     F++  IS  E+ K+  N + +I LA   ++ L
Sbjct: 1  MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALAELYESDL 57


>gi|326331424|ref|ZP_08197714.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Nocardioidaceae bacterium Broad-1]
 gi|325950680|gb|EGD42730.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Nocardioidaceae bacterium Broad-1]
          Length = 508

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  R+ RK   LTQ ++ +    +QS I+ +E G+  ++++ +  +   LD+ L  +
Sbjct: 10 GNLIRDARKHKGLTQAQLADLLNTSQSAINRIEQGQQNLSLEMIARVGAALDSSLVDI 67


>gi|325662696|ref|ZP_08151293.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086435|ref|ZP_08335515.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325471035|gb|EGC74262.1| hypothetical protein HMPREF0490_02033 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330406201|gb|EGG85724.1| hypothetical protein HMPREF0987_01818 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 68

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  NN +N R E KL+Q E+    G +++ IS +ETG+        ++L   L+    +
Sbjct: 5  LILKNNLKNARAERKLSQMELAELVGVSRNTISSIETGQFNPTAKLALLLCIALEKKFEE 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
 gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
          Length = 230

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                RK+A L+Q+++  + G ++  +S+ E+G++  ++  +  +          LL
Sbjct: 5  ERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLFGVSSDWLL 62


>gi|262173540|ref|ZP_06041217.1| predicted transcriptional regulator [Vibrio mimicus MB-451]
 gi|261890898|gb|EEY36885.1| predicted transcriptional regulator [Vibrio mimicus MB-451]
          Length = 207

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 181

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +R + KLTQ E+    G  ++ ++ +E+  S  +I  ++ +A  L   +  L+ 
Sbjct: 9  IKRLRAQHKLTQIELAEMAGIPRATLANMESSNSNPSISVVMKVAQALGVTVDDLIT 65


>gi|121595107|ref|YP_987003.1| XRE family transcriptional regulator [Acidovorax sp. JS42]
 gi|120607187|gb|ABM42927.1| transcriptional regulator, XRE family [Acidovorax sp. JS42]
          Length = 271

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +   H           F    R+ R+   L+Q ++ +    +   +S +ETG+++ + D 
Sbjct: 2  QAMHHAPALSTP--TPFGERLRHWRQHRCLSQLDLAHAAEVSTRHLSCVETGRASPSRDM 59

Query: 66 MIILAHTLDTPLWK 79
          ++ LAH LD PL +
Sbjct: 60 VLRLAHRLDVPLRE 73


>gi|110633833|ref|YP_674041.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284817|gb|ABG62876.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1]
          Length = 198

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +R E  L    LR   +  ++ R +RK   LT   + ++ G +  W+S++E G S  ++ 
Sbjct: 6  ERAETDLKTKALR---LLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVA 62

Query: 65 NMIILAHTLDTPLWKLLKP 83
          ++  LA+    P+   L P
Sbjct: 63 DLRALANHFKVPVSFFLTP 81


>gi|158319817|ref|YP_001512324.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158140016|gb|ABW18328.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 71

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RKE  L+Q+E       ++  IS +ETGK   +++   I+++    P+ ++ 
Sbjct: 3  NKVEILRKEKGLSQEEFAKIIRVSRQTISSIETGKYNPSLELAFIISNYFGKPIEEIF 60


>gi|333031050|ref|ZP_08459111.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011]
 gi|332741647|gb|EGJ72129.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011]
          Length = 105

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   FR+ RK  KLTQKE+ ++ G  +S+I  +E G + + + + I +A  L   L
Sbjct: 43 YGEIFRDRRKTLKLTQKELADKVGKERSYIGRIEKGSTDMQLSSFISIARALGLDL 98


>gi|330880055|gb|EGH14204.1| RtrR protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
          Length = 76

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      
Sbjct: 6  KALGRRIRTQRKACQISQDALALACNIDRSYVGRIERGEVNITVEKLYRIAGVLACDPSG 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|326385587|ref|ZP_08207221.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
          19370]
 gi|326209921|gb|EGD60704.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM
          19370]
          Length = 227

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 35/65 (53%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E   F +  R++R    LT  ++  +TG  +S +S++E  K +++ D ++ ++  L+  
Sbjct: 12 PETARFGHILRDLRTRLGLTLNDVGLKTGIPRSTLSKIENDKMSLSYDKIVKISSALNVD 71

Query: 77 LWKLL 81
          + +L 
Sbjct: 72 ISELF 76


>gi|307298372|ref|ZP_07578176.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
 gi|306916458|gb|EFN46841.1| transcriptional regulator, XRE family [Thermotogales bacterium
          mesG1.Ag.4.2]
          Length = 103

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N R+ R   +L+Q+E+    G  Q +ISE+E G+          LA  L  P+ ++ 
Sbjct: 3  NLRDERIIRELSQRELGEVIGKDQKYISEVELGRIIPCFRKADTLARFLGVPVERIF 59


>gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 206

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     + +E+  R    QS +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 14 LVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLVTLARALDTSLDQL 73

Query: 81 LK 82
          ++
Sbjct: 74 VE 75


>gi|253689846|ref|YP_003019036.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251756424|gb|ACT14500.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 200

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R+      R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD
Sbjct: 21 TPIARLAVA--IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALD 78

Query: 75 TPLWKLL 81
            + +L+
Sbjct: 79 VQVSQLI 85


>gi|239820585|ref|YP_002947770.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805438|gb|ACS22504.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 190

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R  A ++   +   +G + S +S +E G  + +++ +  L+  L     +  
Sbjct: 10 GAQVRALRMAADVSGGALAKASGISASMLSRIERGLVSPSVETLERLSKGLGVSAPRFF 68


>gi|254974937|ref|ZP_05271409.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092326|ref|ZP_05321804.1| MerR family transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255100407|ref|ZP_05329384.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306352|ref|ZP_05350523.1| MerR family transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255314064|ref|ZP_05355647.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255516744|ref|ZP_05384420.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649843|ref|ZP_05396745.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683001|ref|YP_003214286.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686599|ref|YP_003217732.1| hypothetical protein CDR20291_1234 [Clostridium difficile R20291]
 gi|306519941|ref|ZP_07406288.1| hypothetical protein CdifQ_07697 [Clostridium difficile
          QCD-32g58]
 gi|260209164|emb|CBA62385.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212615|emb|CBE03634.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 188

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     RNIRK  K T  ++   T  + S+IS++E      ++ ++  +A  LDTPL+
Sbjct: 1  MLGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLY 58


>gi|254180890|ref|ZP_04887488.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|184211429|gb|EDU08472.1| DNA-binding protein [Burkholderia pseudomallei 1655]
          Length = 195

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  L +
Sbjct: 8  ARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLASLFE 67


>gi|229170545|ref|ZP_04298193.1| Transcriptional regulator [Bacillus cereus AH621]
 gi|228612894|gb|EEK70071.1| Transcriptional regulator [Bacillus cereus AH621]
          Length = 65

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R E  LTQ+E+ +     +  IS +E+ K   ++   I +A TLD  L KL 
Sbjct: 4  SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLF 61


>gi|324327531|gb|ADY22791.1| helix-turn-helix domain-containing protein [Bacillus
          thuringiensis serovar finitimus YBT-020]
          Length = 262

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
 gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp.
          margaretiae ATCC 43715]
          Length = 73

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    +RK   LTQ+E   +   ++  IS +E GK   ++D    +A   +  + ++  
Sbjct: 5  NKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYNPSLDLAFEIAIYFNKTIEEIFT 63


>gi|228986720|ref|ZP_04146850.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228773051|gb|EEM21487.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 262

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   L+Q+ +  +    +  +S+ E G+     + +I++ +  +  L  LL
Sbjct: 3  FGEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|228953531|ref|ZP_04115575.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229079669|ref|ZP_04212202.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|228703509|gb|EEL55962.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2]
 gi|228806155|gb|EEM52730.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 184

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
          Length = 132

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E KLTQ+E+  +   +++ IS  E      + D+++ LA+  +     LL
Sbjct: 6  FGTRLKQLRTEHKLTQEELGKKINVSKASISLYEKNLREPSKDSLVTLANFFNVSTDYLL 65


>gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC
          29149]
 gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC
          29149]
          Length = 107

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  + +R +  L+Q+E+  R G ++S +S  E G+   + D +  +A         L
Sbjct: 3  VFANILKTLRTDKHLSQQELATRLGISKSAVSMYEQGRREPDFDILNKIADIFQVDADYL 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|154484074|ref|ZP_02026522.1| hypothetical protein EUBVEN_01785 [Eubacterium ventriosum ATCC
          27560]
 gi|163815734|ref|ZP_02207106.1| hypothetical protein COPEUT_01915 [Coprococcus eutactus ATCC
          27759]
 gi|197302209|ref|ZP_03167268.1| hypothetical protein RUMLAC_00936 [Ruminococcus lactaris ATCC
          29176]
 gi|218132784|ref|ZP_03461588.1| hypothetical protein BACPEC_00645 [Bacteroides pectinophilus ATCC
          43243]
 gi|218282418|ref|ZP_03488687.1| hypothetical protein EUBIFOR_01269 [Eubacterium biforme DSM 3989]
 gi|225028328|ref|ZP_03717520.1| hypothetical protein EUBHAL_02600 [Eubacterium hallii DSM 3353]
 gi|225378593|ref|ZP_03755814.1| hypothetical protein ROSEINA2194_04261 [Roseburia inulinivorans
          DSM 16841]
 gi|226325326|ref|ZP_03800844.1| hypothetical protein COPCOM_03119 [Coprococcus comes ATCC 27758]
 gi|323340766|ref|ZP_08081018.1| putative transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
 gi|149735116|gb|EDM51002.1| hypothetical protein EUBVEN_01785 [Eubacterium ventriosum ATCC
          27560]
 gi|158449039|gb|EDP26034.1| hypothetical protein COPEUT_01915 [Coprococcus eutactus ATCC
          27759]
 gi|197298640|gb|EDY33181.1| hypothetical protein RUMLAC_00936 [Ruminococcus lactaris ATCC
          29176]
 gi|217992510|gb|EEC58513.1| hypothetical protein BACPEC_00645 [Bacteroides pectinophilus ATCC
          43243]
 gi|218216608|gb|EEC90146.1| hypothetical protein EUBIFOR_01269 [Eubacterium biforme DSM 3989]
 gi|224954374|gb|EEG35583.1| hypothetical protein EUBHAL_02600 [Eubacterium hallii DSM 3353]
 gi|225206069|gb|EEG88423.1| hypothetical protein COPCOM_03119 [Coprococcus comes ATCC 27758]
 gi|225209430|gb|EEG91784.1| hypothetical protein ROSEINA2194_04261 [Roseburia inulinivorans
          DSM 16841]
 gi|323091889|gb|EFZ34509.1| putative transcriptional regulator [Lactobacillus ruminis ATCC
          25644]
          Length = 68

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E++   N+ + +R EA L+Q ++    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKEQLQLKNHLKEVRTEANLSQAQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|89892828|ref|YP_516315.1| hypothetical protein DSY0082 [Desulfitobacterium hafniense Y51]
 gi|89332276|dbj|BAE81871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 68

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+E  LTQKE+  + G ++  I+ +ETGK   ++     LA      + +L 
Sbjct: 3  NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWLAYDLAKLFKVSIEELF 60


>gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 226

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK   L+Q+++    G ++  +++ E G+S  +I  +I L+      + K
Sbjct: 1  MSFQEQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDK 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 293

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  RK+A L+Q+++  + G ++  I++ E G  T +I N++ +A+     + +LL
Sbjct: 5  EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQISVDELL 62


>gi|306835383|ref|ZP_07468404.1| conserved hypothetical protein [Corynebacterium accolens ATCC
          49726]
 gi|304568749|gb|EFM44293.1| conserved hypothetical protein [Corynebacterium accolens ATCC
          49726]
          Length = 120

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS------TINIDNMIILAHTLDT 75
          F    R +R+   ++Q+ + + +G ++S IS LE  ++         +  +  LA  L+ 
Sbjct: 15 FSQQLRRVRERRGVSQQVLADISGVSRSQISNLERNENGLHTMADPQLSTVYKLALALEI 74

Query: 76 PLWKLL 81
          P   LL
Sbjct: 75 PPAVLL 80


>gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC
          49185]
 gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
 gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
          Length = 168

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK+  ++Q+++    G ++  +S+ E+G+S   ID +I L++  +     LLK
Sbjct: 6  KIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLK 63


>gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato T1]
 gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato T1]
          Length = 118

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RK     Q ++    G  +  IS  E G  T N+D+++ L   L     +LL
Sbjct: 9  GVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67


>gi|220916034|ref|YP_002491338.1| transcriptional regulator, XRE family [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219953888|gb|ACL64272.1| transcriptional regulator, XRE family [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 260

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +   N R +R +  L+ +++   +G +++ + ++E G+S   I+ +  ++  L  P   L
Sbjct: 79  VVGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSAL 138

Query: 81  LK 82
           + 
Sbjct: 139 IT 140


>gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium
          aromaticivorans DSM 12444]
 gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 464

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + IR+E  LTQ+ +    G + S+I+ +E  +  +  D ++ LA      +  L
Sbjct: 8  LGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMADL 66


>gi|325261431|ref|ZP_08128169.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324032885|gb|EGB94162.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 95

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE   TQK++ +  G A S IS  E G    + D +I L+         LL
Sbjct: 4  FGKKIKQLRKEYNFTQKQLASLAGVAVSAISAYEAGNRYPSYDVLISLSRIFHVSTDYLL 63


>gi|253576835|ref|ZP_04854160.1| helix-turn-helix domain-containing protein [Paenibacillus sp.
          oral taxon 786 str. D14]
 gi|251843702|gb|EES71725.1| helix-turn-helix domain-containing protein [Paenibacillus sp.
          oral taxon 786 str. D14]
          Length = 69

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      R  RK    TQ+E+  ++G + + +  +E G    +   +  +A  L   L
Sbjct: 2  ENMQLAQRIRAFRKLKGFTQQELAEKSGVSLALLGAVERGNRRADDQMLTKIAQCLGISL 61

Query: 78 WKL 80
           +L
Sbjct: 62 AEL 64


>gi|257066681|ref|YP_003152937.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256798561|gb|ACV29216.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 134

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +  R +  +TQ+E+  +   ++  IS  E  K+  +I N+I L+   +  L +LLK
Sbjct: 4  GDKLKEARLKKNMTQEEVAEKIFVSRQSISNWENNKTYPDIGNVIALSDLYEISLDELLK 63


>gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC
          35704]
 gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC
          35704]
          Length = 134

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN R +RK+  LTQ  + N    ++   S  ET K T ++D+++ LA      L  L+
Sbjct: 6  LANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLAGFYHVSLNDLV 65


>gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88]
 gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88]
          Length = 126

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +RK A  +Q+++ +  G ++  IS+ E+G+S  +I N+I L+   +     +L
Sbjct: 5  ERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSNPDISNVIKLSGIYNVSTDYIL 62


>gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 80

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  R    LTQ+++    G  ++ I+++E G +  +++N   +A  LD
Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSARPSVNNAKKIAQALD 62


>gi|330814715|ref|YP_004362890.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3]
 gi|327374707|gb|AEA66058.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3]
          Length = 111

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +A  +Q+++ +    ++  IS +E+G +   +  +  L   L   L +L 
Sbjct: 23 VGRRLKEVRLQAGKSQEDLAHEAAVSRVAISAVESGAANTTVLTLAALCRPLGISLSELF 82

Query: 82 KP 83
           P
Sbjct: 83 AP 84


>gi|327184359|gb|AEA32806.1| hypothetical protein LAB52_09520 [Lactobacillus amylovorus GRL
          1118]
          Length = 94

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +R +   +Q+E+  +   ++  +S+ E+G+S  ++D +++L++  D     LLK
Sbjct: 5  QKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDYLLK 63


>gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 107

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R    +  +  RK   +TQ E+  ++G   S I + E+G+     D +  +A  L   
Sbjct: 4  RHSIGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGIS 61


>gi|229552822|ref|ZP_04441547.1| xre family transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|229313804|gb|EEN79777.1| xre family transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
          Length = 223

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+M F +  +  R++  LTQ ++  +   +   IS  E G+S  +I  ++ ++      L
Sbjct: 7  EKMQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISL 66

Query: 78 WKLLK 82
           +LL+
Sbjct: 67 DQLLR 71


>gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM
          13279]
 gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM
          13279]
          Length = 152

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R E  LTQ+E+ +R    +  +S  ETG +   ID + ++A  LD P+ +LL
Sbjct: 10 QLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVMRLL 63


>gi|302549793|ref|ZP_07302135.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
 gi|51317972|gb|AAU00097.1| putative ORF192 [Streptomyces viridochromogenes]
 gi|302467411|gb|EFL30504.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
          Length = 192

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R    LT +++ +R   + S +S +E G+    +  +  +A  L      LL
Sbjct: 7  LGSRIQELRLSQSLTLQDLADRAAVSVSMLSSVERGRKAPTVVVLARIAEGLGVTAAHLL 66

Query: 82 K 82
           
Sbjct: 67 T 67


>gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter
          irgensii 23-P]
 gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter
          irgensii 23-P]
          Length = 245

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + IR    L+Q+         ++ +   E G+S   ID +I +A+     +   L
Sbjct: 4  FGKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSEPKIDTLIKVANYFSISIDDFL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine
          microorganism HF4000_097M14]
          Length = 474

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 32/58 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              ++ R+   ++Q ++  +   + S+++ +E+GK  I++D ++ +A+ L   +  +
Sbjct: 9  GYKIKSKRRSLGISQADMAKKLSISPSYLNLIESGKRKISVDLLLKVANELGIEISDI 66


>gi|209546650|ref|YP_002278568.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209537894|gb|ACI57828.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 276

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R     +Q ++   TG +Q  IS +E+G+ST    N++ LA  LD PL +
Sbjct: 14 LGAQLRAWRGARGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLADALDVPLRE 71


>gi|167571834|ref|ZP_02364708.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 200

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82


>gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 302

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  ++Q+E+  R   ++  +S+ E  +     + M+++ +     +  LL
Sbjct: 3  FGEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVTMDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
          11154]
 gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU
          11154]
          Length = 171

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R+E  +TQ E+  +   +   IS  ETGK+  ++DN++ +A  L   L K
Sbjct: 1  MTFAQIIKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDK 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|228957400|ref|ZP_04119156.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228802278|gb|EEM49139.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 149

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETG++  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGQNYPSIEIIIHLSDLFSITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|227512586|ref|ZP_03942635.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
 gi|227084201|gb|EEI19513.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
          Length = 198

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R IR E   +  ++   +G ++  +S++E   ++  I+ +  +   L+ P   L
Sbjct: 16 IVSKNLRKIRLERGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVPYTTL 75

Query: 81 LK 82
          L+
Sbjct: 76 LE 77


>gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 130

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|225019632|ref|ZP_03708824.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum
          DSM 5476]
 gi|224947599|gb|EEG28808.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum
          DSM 5476]
          Length = 120

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D +  +   F    +  RK   +++ ++ +R   A  +I+ +E      ++     L   
Sbjct: 4  DKVKYDFKAFGQAIKEARKAKGISRNQLADRLNIAPRYIASIENSGQHPSLQIFYELVTF 63

Query: 73 LDTPLWKLLKP 83
          LD  + +   P
Sbjct: 64 LDVSVDQFFFP 74


>gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 473

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R +R++  LTQ  +    G + S++++LE  +  I +  ++ LA   D P
Sbjct: 7  GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLP 60


>gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721]
 gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721]
          Length = 358

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  E      N +  RK+ KL+Q E+  + G A++ I   E  +   NI  +I L+  ++
Sbjct: 2  IEIELHNLALNIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMN 61

Query: 75 TPLWKLL 81
            +  LL
Sbjct: 62 CSIDSLL 68


>gi|13488172|ref|NP_085894.1| hypothetical protein mll9374 [Mesorhizobium loti MAFF303099]
 gi|14028429|dbj|BAB54981.1| mll9374 [Mesorhizobium loti MAFF303099]
          Length = 405

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 3  RRKRDEPHLSDAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          R KR    +      E+ I        R  RK   L+ + +  + G + S +S+LETGK+
Sbjct: 8  RSKRAGAVMDARSEVEKQINGMVGKRLREARKAKSLSLEALAGKVGMSVSQLSKLETGKA 67

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
            +I  ++     LD      L+
Sbjct: 68 PASIAALVRFGLELDRSAQYFLQ 90


>gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
          Length = 168

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+E KL+QKE+ +  G  +  IS  E G+STI  D    LA   +  +  LL
Sbjct: 2  NRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLL 59


>gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334]
 gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334]
          Length = 158

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 131

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +R E  L+Q++I N+   ++  IS  E+G +T ++ N++ LA  L+T L  L+
Sbjct: 8  QLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSLDSLV 64


>gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551]
 gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609]
 gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551]
 gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609]
          Length = 209

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +DA + ER+      R +R     T   +  R G ++S IS +E G ++     +  LA
Sbjct: 11 DTDAGVNERI--ARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLA 68

Query: 71 HTLDTPLWKLL 81
            L   L  L 
Sbjct: 69 AGLGVSLASLF 79


>gi|327542983|gb|EGF29431.1| transcriptional regulator, XRE family [Rhodopirellula baltica WH47]
          Length = 232

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R +  +T  E+  ++G  +SW+S +E  + T ++  +  LA +L      LL
Sbjct: 54  LAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSSLL 113

Query: 82  K 82
           +
Sbjct: 114 E 114


>gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 200

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  RK+  +TQ+E+      ++S IS  E G++  +I  +I LA      L +
Sbjct: 1  MAFHQMIKERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli
          CIAT 894]
          Length = 182

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|194018000|ref|ZP_03056607.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194010337|gb|EDW19912.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 77

 Score = 51.5 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+ ++    R  RK    TQ+    R G + S + E+E G        +  +A  L+  +
Sbjct: 2  EKDMWGRRIRAYRKLKGYTQEGFAKRLGISVSVLGEIERGNRLPTNQLVDQIADALNITV 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|288556482|ref|YP_003428417.1| DNA-binding protein XRE transcriptional regulator [Bacillus
          pseudofirmus OF4]
 gi|288547642|gb|ADC51525.1| DNA-binding protein XRE transcriptional regulator [Bacillus
          pseudofirmus OF4]
          Length = 64

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q E+  + G  +  I  +E GK    +   + +  TL   L +L 
Sbjct: 5  RLKIARTEHDLSQAELAKKVGVTRQTIGLIEAGKYNPTLQLCLAICKTLHKTLDELF 61


>gi|229072719|ref|ZP_04205921.1| Transcription regulator, probable-related protein [Bacillus
          cereus F65185]
 gi|229193504|ref|ZP_04320451.1| Transcription regulator, probable-related protein [Bacillus
          cereus ATCC 10876]
 gi|228590036|gb|EEK47908.1| Transcription regulator, probable-related protein [Bacillus
          cereus ATCC 10876]
 gi|228710695|gb|EEL62668.1| Transcription regulator, probable-related protein [Bacillus
          cereus F65185]
          Length = 68

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +++NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L
Sbjct: 4  LYLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63

Query: 81 L 81
           
Sbjct: 64 F 64


>gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
 gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
          Length = 158

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ +     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|146305877|ref|YP_001186342.1| cupin 2 domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574078|gb|ABP83610.1| Cupin 2, conserved barrel domain protein [Pseudomonas mendocina
          ymp]
          Length = 188

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+ A  T  ++    G   S++S+ E   + +++ ++  +A  LD PL  L 
Sbjct: 7  GERLRRYRRAAGKTLNQVAAEAGLTASFLSQAERNLTGVSLSSLASIAKALDVPLNVLF 65


>gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061]
 gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila]
 gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061]
          Length = 101

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++     +  RKE  +T   +  + G +Q  +S  E G + IN+D+++++A  L+TP+
Sbjct: 6  LLVGQRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPI 63


>gi|241113309|ref|YP_002973144.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
 gi|240861517|gb|ACS59183.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 86

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R +   N + +R    L+Q+ +    G  +  IS++E  +  + ID++  +A  L  
Sbjct: 1  MTPRDLLAWNVKKLRVNRGLSQERLALEAGLERVSISQIERKRVNLGIDSLGKIASVLGC 60

Query: 76 PLWKLL 81
           + +L 
Sbjct: 61 DILELF 66


>gi|257791706|ref|YP_003182312.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257475603|gb|ACV55923.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 73

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +       + +RKE   L+Q++     G  +++ + +E G+  ++I  +  +A  +   L
Sbjct: 7  QKQVGVRLKALRKEKTGLSQEKFAYSIGVDRAYYAHIEQGRHGVSIVMLKKIADGMGIGL 66

Query: 78 WKLLK 82
           ++ K
Sbjct: 67 EEMFK 71


>gi|254510889|ref|ZP_05122956.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221534600|gb|EEE37588.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 184

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +R+    + +++ +++G +++ +S +E G  +   + +  L      P+ +LL
Sbjct: 12 RLNELRQGRGWSLEQLADQSGISRANLSRMEKGDVSPTAETLGRLCAAYGLPMSRLL 68


>gi|167755905|ref|ZP_02428032.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402]
 gi|237734869|ref|ZP_04565350.1| DNA-binding protein [Mollicutes bacterium D7]
 gi|167704844|gb|EDS19423.1| hypothetical protein CLORAM_01422 [Clostridium ramosum DSM 1402]
 gi|229382197|gb|EEO32288.1| DNA-binding protein [Coprobacillus sp. D7]
          Length = 177

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R+   LT +E+ NR+   + ++S+LE   ++ ++  +  +   L T L +  
Sbjct: 4  GSKVKRLRQANGLTLEELANRSELTKGFLSQLERDLTSPSVATLEDILEALGTNLQEFF 62


>gi|188581317|ref|YP_001924762.1| anaerobic benzoate catabolism transcriptional regulator
          [Methylobacterium populi BJ001]
 gi|179344815|gb|ACB80227.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Methylobacterium populi BJ001]
          Length = 299

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    L++K +   +G ++ +I++LE+G+  ++I  +  +A+ +   L  L+
Sbjct: 15 LGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLRRVANAMGLRLDDLV 74


>gi|114881116|ref|YP_758657.1| conjugal transfer protein TrbA [Pseudomonas aeruginosa]
 gi|168998393|ref|YP_001687670.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Birmingham IncP-alpha plasmid]
 gi|540916|pir||A49852 hypothetical protein trbA [imported] - plasmid RK2
 gi|152555|gb|AAA26427.1| trfA [Plasmid RP4]
 gi|294706|gb|AAA26404.1| trfA [Plasmid RK2]
 gi|581453|emb|CAA46820.1| TrbA [Escherichia coli]
 gi|53794351|gb|AAU93702.1| TrbA [Integration vector pJK202]
 gi|114703527|emb|CAK12664.1| TrbA repressor protein [Pseudomonas aeruginosa]
 gi|130693835|gb|ABO32173.1| TrbA [Broad host range expression vector pRK415iq]
 gi|130693916|gb|ABO32186.1| TrbA [Broad host range expression vector pRK415]
 gi|148767926|gb|ABR10913.1| TrbA [Broad host range expression vector pRKNH3]
 gi|154814520|gb|ABS87285.1| TrbA [Cloning vector pCPP5301]
 gi|154814532|gb|ABS87296.1| TrbA [Cloning vector pCPP5264]
 gi|154814551|gb|ABS87313.1| TrbA [Cloning vector pCPP5386]
 gi|157277496|tpe|CAJ85687.1| TPA: TrbA repressor protein [Birmingham IncP-alpha plasmid]
 gi|262117765|dbj|BAI47857.1| TrbA [Helper vector pRH210]
 gi|262117809|dbj|BAI47900.1| TrbA [Helper vector pRH220]
 gi|317109774|gb|ADU90713.1| conjugal transfer protein TrbA [uncultured bacterium]
 gi|317109857|gb|ADU90795.1| conjugal transfer protein TrbA [uncultured bacterium]
 gi|317109942|gb|ADU90879.1| TrbA repressor [uncultured bacterium]
          Length = 121

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           IF  N   +  E  +T+ E+  R G + S++S+L  GK+  ++  M  +A  
Sbjct: 4  QIFFTNILRLLDERGMTKHELSERAGVSISFLSDLTNGKANPSLKVMEAIADA 56


>gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 194

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+       +RKE +L+Q+++  +   ++  IS+ E G +  + ++++ LA   +  +  
Sbjct: 4  MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 63

Query: 80 LLK 82
          LL+
Sbjct: 64 LLR 66


>gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909]
          Length = 191

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+       +RKE +L+Q+++  +   ++  IS+ E G +  + ++++ LA   +  +  
Sbjct: 1  MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 106

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R  A +TQ+++  R    ++ IS  E  +   + + +I +A         L 
Sbjct: 4  FGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDYLF 63


>gi|288803878|ref|ZP_06409303.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella melaninogenica D18]
 gi|288333643|gb|EFC72093.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella melaninogenica D18]
          Length = 103

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    +  RK+ K+TQ+++ ++ G  + +IS +E G S + +   + +A+ L 
Sbjct: 43 YAELLKEQRKQQKMTQQQLADKIGKKREYISNIERGNSDMQLSTFMQIANALG 95


>gi|302540026|ref|ZP_07292368.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302457644|gb|EFL20737.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 207

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
            +E    D    ER+I     R  R+ A L+  E+  R G +++ +S++E  ++  ++ 
Sbjct: 7  PAEESDNPDDKALERVI-AVRAREYRQAAGLSVGEMAQRVGISKAMLSKIENAQTACSLT 65

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  LA  LD P+  L +
Sbjct: 66 TLSRLARGLDVPVTALFR 83


>gi|229137167|ref|ZP_04265786.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
 gi|228646339|gb|EEL02554.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26]
          Length = 70

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R+IRK  K+TQ+E+    GF+  S IS +E G+  +N D +  LA  L   + ++ 
Sbjct: 2  RIRHIRKAKKITQEELAKNLGFSGSSAISYIENGQRKLNADKIPKLAECLGVTIEEIF 59


>gi|150403131|ref|YP_001330425.1| helix-turn-helix domain-containing protein [Methanococcus
          maripaludis C7]
 gi|150034161|gb|ABR66274.1| helix-turn-helix domain protein [Methanococcus maripaludis C7]
          Length = 200

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 7  DEPHLSDAILRER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          D P+ +  I  E    I   N + IR E  L+   +   TG ++  + ++E  +    I 
Sbjct: 7  DIPYKTKVIFMENPSHIISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTIT 66

Query: 65 NMIILAHTLDTPLWKLL 81
           ++ +A+ L      LL
Sbjct: 67 TILKIANGLKISFTSLL 83


>gi|296110834|ref|YP_003621215.1| hypothetical protein LKI_03520 [Leuconostoc kimchii IMSNU 11154]
 gi|295832365|gb|ADG40246.1| hypothetical protein LKI_03520 [Leuconostoc kimchii IMSNU 11154]
          Length = 110

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +R    LTQ E+  +   + S IS++E  +  I I+ +  +A  L+T +  L
Sbjct: 5  VIGNKIKELRTLQNLTQFELAEKANLSISLISKIEIQEENIKINTLQNIAKALNTTVESL 64

Query: 81 LK 82
          LK
Sbjct: 65 LK 66


>gi|259417313|ref|ZP_05741232.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
 gi|259346219|gb|EEW58033.1| transcriptional regulator, XRE family with cupin sensor
          [Silicibacter sp. TrichCH4B]
          Length = 204

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 32/67 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +      +        R  RK+ KLT + + +++G +  ++S++E   +T ++  +  ++
Sbjct: 1  MPREKPPQEPNVGPAIRKRRKQLKLTLQALCDKSGVSVGYLSQVERDNATPSLGTLAQIS 60

Query: 71 HTLDTPL 77
            LD  L
Sbjct: 61 AALDVGL 67


>gi|258623173|ref|ZP_05718182.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573]
 gi|258625497|ref|ZP_05720389.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603]
 gi|258582203|gb|EEW07060.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603]
 gi|258584471|gb|EEW09211.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573]
          Length = 223

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           E +      ++IR    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 40  EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 99

Query: 78  WKLLKP 83
            +L +P
Sbjct: 100 PQLFEP 105


>gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24]
 gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24]
 gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24]
          Length = 191

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE ++T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 11 VGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAHQVPLDELV 70


>gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum
           DSM 5476]
 gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum
           DSM 5476]
          Length = 154

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +F +  R +R E  LTQ  +      +Q  +   E GK   +   +  LA    T +  L
Sbjct: 46  MFAHRLRQLRLERGLTQAALAKHLDVSQGTVGNWEGGKREPDFATVARLAALFGTTVDDL 105

Query: 81  L 81
           +
Sbjct: 106 I 106


>gi|163757791|ref|ZP_02164880.1| Transcriptional regulator, XRE family protein [Hoeflea
          phototrophica DFL-43]
 gi|162285293|gb|EDQ35575.1| Transcriptional regulator, XRE family protein [Hoeflea
          phototrophica DFL-43]
          Length = 182

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R     + +++ + +G ++S +S +ETG+ +   + +  ++      + +LL
Sbjct: 8  LADRLKQLRATRGWSLQQLADISGVSRSALSRIETGEVSPTAETLGAMSSAFQMTISQLL 67

Query: 82 KP 83
           P
Sbjct: 68 AP 69


>gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct]
          Length = 183

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62


>gi|284802769|ref|YP_003414634.1| transcriptional regulator [Listeria monocytogenes 08-5578]
 gi|284995911|ref|YP_003417679.1| transcriptional regulator [Listeria monocytogenes 08-5923]
 gi|284058331|gb|ADB69272.1| transcriptional regulator [Listeria monocytogenes 08-5578]
 gi|284061378|gb|ADB72317.1| transcriptional regulator [Listeria monocytogenes 08-5923]
          Length = 101

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  + +R +   TQ++I N  G +++  S +E G++  +++ ++ LA+  +     L
Sbjct: 1  MFGDKLKMLRSKTNKTQEDIANILGVSRAAYSHIENGRNEPDMETIVKLANYFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|320007252|gb|ADW02102.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 204

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++R+   LT +    R G + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 16 APRLRDLRRNRGLTLEAAAGRAGLSPAHLSRLETGRRQPSLPMLLGLARVYGTTVSELL 74


>gi|229153416|ref|ZP_04281594.1| Transcription regulator, probable-related protein [Bacillus
          cereus m1550]
 gi|228630020|gb|EEK86671.1| Transcription regulator, probable-related protein [Bacillus
          cereus m1550]
          Length = 68

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +++NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L+T L  L
Sbjct: 4  LYLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALETDLNSL 63

Query: 81 L 81
           
Sbjct: 64 F 64


>gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 415

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N ++ RK+ KLTQ+E+  + G A+S +S  E G    NI  +I L+  ++  L  L
Sbjct: 8  IFSENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLMNCSLDNL 67

Query: 81 L 81
          +
Sbjct: 68 I 68


>gi|149201917|ref|ZP_01878891.1| hypothetical protein RTM1035_05235 [Roseovarius sp. TM1035]
 gi|149144965|gb|EDM32994.1| hypothetical protein RTM1035_05235 [Roseovarius sp. TM1035]
          Length = 157

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  F  + R  R   KL+Q+E+    G ++ +I ++E G+S  + + +  L     
Sbjct: 2  AKKDFGQSLREWRVTQKLSQRELSAAIGVSRGYIGDIEAGRSEPSRNFLERLQERFG 58


>gi|148266629|ref|YP_001245572.1| XRE family transcriptional regulator [Staphylococcus aureus
          subsp. aureus JH9]
 gi|150392669|ref|YP_001315344.1| hypothetical protein SaurJH1_0195 [Staphylococcus aureus subsp.
          aureus JH1]
 gi|257793983|ref|ZP_05642962.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|258408610|ref|ZP_05680895.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|258421201|ref|ZP_05684128.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|258438949|ref|ZP_05690040.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|258444184|ref|ZP_05692518.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|258447065|ref|ZP_05695215.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|258448523|ref|ZP_05696636.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|258455756|ref|ZP_05703711.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|282893361|ref|ZP_06301594.1| transcriptional regulator [Staphylococcus aureus A8117]
 gi|282926312|ref|ZP_06333944.1| transcriptional regulator [Staphylococcus aureus A10102]
 gi|295405474|ref|ZP_06815284.1| transcriptional regulator [Staphylococcus aureus A8819]
 gi|296274946|ref|ZP_06857453.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          subsp. aureus MR1]
 gi|297209290|ref|ZP_06925689.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|297244811|ref|ZP_06928691.1| transcriptional regulator [Staphylococcus aureus A8796]
 gi|300911288|ref|ZP_07128737.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|147739698|gb|ABQ47996.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          JH9]
 gi|149945121|gb|ABR51057.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus JH1]
 gi|257787955|gb|EEV26295.1| transcriptional regulator [Staphylococcus aureus A9781]
 gi|257840619|gb|EEV65078.1| transcriptional regulator [Staphylococcus aureus A9763]
 gi|257842625|gb|EEV67047.1| transcriptional regulator [Staphylococcus aureus A9719]
 gi|257847825|gb|EEV71821.1| transcriptional regulator [Staphylococcus aureus A9299]
 gi|257850443|gb|EEV74391.1| transcriptional regulator [Staphylococcus aureus A8115]
 gi|257854078|gb|EEV77031.1| transcriptional regulator [Staphylococcus aureus A6300]
 gi|257858154|gb|EEV81042.1| transcriptional regulator [Staphylococcus aureus A6224]
 gi|257861968|gb|EEV84741.1| transcriptional regulator [Staphylococcus aureus A5937]
 gi|282591641|gb|EFB96712.1| transcriptional regulator [Staphylococcus aureus A10102]
 gi|282764047|gb|EFC04174.1| transcriptional regulator [Staphylococcus aureus A8117]
 gi|294969549|gb|EFG45568.1| transcriptional regulator [Staphylococcus aureus A8819]
 gi|296886223|gb|EFH25157.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|297178328|gb|EFH37575.1| transcriptional regulator [Staphylococcus aureus A8796]
 gi|300887467|gb|EFK82663.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          TCH70]
          Length = 65

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R    +TQKE+ N+ G  +  IS +E G    ++     +   L+  L ++ 
Sbjct: 3  NNLKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIF 60


>gi|328954706|ref|YP_004372039.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328455030|gb|AEB06224.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 191

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P    A  R         R++RK+  LT  ++   TG +  ++S +E G S+  + N+
Sbjct: 4  STPGEDIAAGRAATQLGERLRSLRKKKVLTITQLSLYTGLSVGFLSNMENGISSPTVANL 63

Query: 67 IILAHTLDTPLWKLL 81
            + + L+  +  +L
Sbjct: 64 TKVCNALNVSILDVL 78


>gi|326381708|ref|ZP_08203402.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326199955|gb|EGD57135.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 96

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R  F       R  A +TQ E+   +G ++  IS LE G S+I+ D +  LA  L T 
Sbjct: 18 VRRRAFGAALAQARLTAGMTQDELAAASGVSRPTISRLELGTSSISSDRVWDLAEALGTT 77

Query: 77 LWKL 80
             +
Sbjct: 78 PADI 81


>gi|296171710|ref|ZP_06852903.1| transcriptional regulatory protein [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295893987|gb|EFG73751.1| transcriptional regulatory protein [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 112

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REVIGDVLREARMTQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDALEVPLS 65

Query: 79 KLL 81
           +L
Sbjct: 66 SVL 68


>gi|227502795|ref|ZP_03932844.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49725]
 gi|227076525|gb|EEI14488.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49725]
          Length = 153

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS------TINIDNMIILAHTLDT 75
           F    R +R+   ++Q+ + + +G ++S IS LE  ++         +  +  LA  L+ 
Sbjct: 48  FSQQLRRVRERRGVSQQVLADISGVSRSQISNLERNENGLHTMADPQLSTVYKLALALEI 107

Query: 76  PLWKLL 81
           P   LL
Sbjct: 108 PPAVLL 113


>gi|182414739|ref|YP_001819805.1| XRE family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177841953|gb|ACB76205.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1]
          Length = 204

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I        R   KL+  ++  R+  ++  +S++E GK    I  M  +A  L  PL +
Sbjct: 25 QIIAKKILTERHRQKLSLGDLAVRSDVSKGMLSQIEQGKRNPTIAVMSKIATGLRVPLAR 84

Query: 80 LL 81
          LL
Sbjct: 85 LL 86


>gi|148257862|ref|YP_001242447.1| anaerobic benzoate catabolism transcriptional regulator
          [Bradyrhizobium sp. BTAi1]
 gi|146410035|gb|ABQ38541.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Bradyrhizobium sp. BTAi1]
          Length = 342

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 4  RKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +++D   ++   + +R +       R +R    +++K +   +G ++ +I++LE+G+  +
Sbjct: 17 QRQDSFPVAGEAVPDRFLSELGARVRTMRAVRGMSRKVLAQTSGVSERYIAQLESGQGNV 76

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +I  +  LA      L  L+
Sbjct: 77 SIMLLRRLAEVAGVQLEDLV 96


>gi|119718420|ref|YP_925385.1| helix-turn-helix domain-containing protein [Nocardioides sp.
          JS614]
 gi|119539081|gb|ABL83698.1| helix-turn-helix domain protein [Nocardioides sp. JS614]
          Length = 128

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               +  R  A+L+ +++  + G +  ++S++E G    + + +  +A  L     +L
Sbjct: 13 LGEYLKEQRVAAELSVRQLAAQAGVSNPYLSQIERGLRRPSAEVLQQIAKALRISAEQL 71


>gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 230

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          +       +  R    LTQK + +  G +Q+ I ++ETGK++     ++ +A+ L   P 
Sbjct: 2  KTTLAGRLKEARAARGLTQKALGDLVGVSQAAIQKIETGKASQTT-KLVEIANALGVMPD 60

Query: 78 W 78
          W
Sbjct: 61 W 61


>gi|282599735|ref|ZP_05971683.2| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282568432|gb|EFB73967.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 201

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +        R+++ L+  E+  + G A+S +S+LE+G    +I+ +  L   LD P  +
Sbjct: 24 ELISKALAAERQKSGLSISELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFSR 83

Query: 80 LLK 82
          L++
Sbjct: 84 LIE 86


>gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC
          15579]
 gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC
          15579]
          Length = 130

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|58337201|ref|YP_193786.1| transcriptional regulator [Lactobacillus acidophilus NCFM]
 gi|227903784|ref|ZP_04021589.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58254518|gb|AAV42755.1| putative transcriptional regulator [Lactobacillus acidophilus
          NCFM]
 gi|227868671|gb|EEJ76092.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 112

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                N R+   +TQ E+ +++G  ++ ++++E G   ++ D +  +A  L+     LL
Sbjct: 7  LAQKITNYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLL 66


>gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ambifaria AMMD]
          Length = 203

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+                     + +R E KLT  ++    G ++S +SE+E  K+   I
Sbjct: 8  RRTPAAAAPQPSGVTPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTI 67

Query: 64 DNMIILAHTLDTPLWKLL 81
               L + L   L +L 
Sbjct: 68 AVAWRLTNALGITLDELF 85


>gi|302869889|ref|YP_003838526.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315501351|ref|YP_004080238.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302572748|gb|ADL48950.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315407970|gb|ADU06087.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 241

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R++A LTQ+ +  R+G +Q+ I+ +E G    ++     L   L   L   ++
Sbjct: 11 ARTLRREREQAGLTQQALAARSGLSQAAIARIERGDRLPSLTAAERLLAALGRQLRIEVE 70

Query: 83 P 83
          P
Sbjct: 71 P 71


>gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 184

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK A LT K +        S +S++E G +  ++  + +++  L  P++   
Sbjct: 6  VGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIPIFNFF 65


>gi|255655401|ref|ZP_05400810.1| MerR family transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296451389|ref|ZP_06893127.1| MerR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296880261|ref|ZP_06904226.1| MerR family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259805|gb|EFH06662.1| MerR family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296428704|gb|EFH14586.1| MerR family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 188

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     RNIRK  K T  ++   T  + S+IS++E      ++ ++  +A  LDTPL+
Sbjct: 1  MLGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLY 58


>gi|254511384|ref|ZP_05123451.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221535095|gb|EEE38083.1| transcriptional Regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 196

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
                 R  R++  L+Q+ +  R G  QS IS++E     +   ++  +AH LD  L 
Sbjct: 6  EQVAETLRKAREQKGLSQRALSARAGVPQSHISKIENNTVDLRTSSLTAIAHALDLELV 64


>gi|167896507|ref|ZP_02483909.1| DNA-binding protein [Burkholderia pseudomallei 7894]
          Length = 202

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+   P           +     + +R E KLT  ++    G ++S +SE+E  K+   I
Sbjct: 8  RRTTAPASPATSATPPRV-GEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTI 66

Query: 64 DNMIILAHTLDTPLWKLL 81
               L + L   L +L 
Sbjct: 67 AVAWRLTNALGISLDELF 84


>gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933]
 gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 111

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M +R +++   SD               +RK   LT  E+  R+G +Q+ IS++E G S+
Sbjct: 7  MDKRAKNQIVDSDI--------ARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSS 58

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +   +  LA+ L+  L KL 
Sbjct: 59 PSATILSRLANALNITLSKLF 79


>gi|15612927|ref|NP_241230.1| transcriptional regulator [Bacillus halodurans C-125]
 gi|10172977|dbj|BAB04083.1| transcriptional regulator [Bacillus halodurans C-125]
          Length = 66

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R    +TQ+++  + G  +  I  +E G+   ++   + +A  L   L  L 
Sbjct: 3  NNVKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLF 60


>gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
 gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
          Length = 219

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               RN+RK  +LT   +   TG +  +IS++E  ++  ++  +  ++  L   
Sbjct: 28 LGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNRPSVTALFRISRALGVS 82


>gi|319938810|ref|ZP_08013174.1| cro/CI family Transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
 gi|319811860|gb|EFW08126.1| cro/CI family Transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
          Length = 189

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ ++       QS   + E GK+ ++I+N  ILA      +  LL
Sbjct: 3  NRLKVLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSIPYLL 60


>gi|296450086|ref|ZP_06891848.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296878467|ref|ZP_06902473.1| XRE family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296261094|gb|EFH07927.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296430551|gb|EFH16392.1| XRE family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 78

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           IF+ N    +RK+  L Q++       ++  IS +E GK   +++    ++   +  + 
Sbjct: 11 EIFLKNCVEALRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIE 70

Query: 79 KLL 81
          ++ 
Sbjct: 71 EIF 73


>gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 195

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +R+   L+  E+   +G +++ IS++E  +S+     +  LA  L  PL +L
Sbjct: 17 LIAARLLALRQAKALSLAELAELSGVSKAMISKVERAESSPTAVLLGRLAAGLGVPLAQL 76

Query: 81 LK 82
          L 
Sbjct: 77 LT 78


>gi|254488462|ref|ZP_05101667.1| DNA-binding protein [Roseobacter sp. GAI101]
 gi|214045331|gb|EEB85969.1| DNA-binding protein [Roseobacter sp. GAI101]
          Length = 190

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               + R +RK   LT + + +R   +  W+S++E   S   I ++  +A  L   +  
Sbjct: 10 QSLGADLRALRKARGLTLQGLADRLNRSVGWLSQVERDLSDPAITDLRQMAQALGVSVSM 69

Query: 80 LLK 82
          L +
Sbjct: 70 LFR 72


>gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 182

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|197122398|ref|YP_002134349.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220917180|ref|YP_002492484.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|196172247|gb|ACG73220.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
 gi|219955034|gb|ACL65418.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 81

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D    E        R  R+   +TQ+ +      + +++S +E G        ++ +A  
Sbjct: 10 DPRREELRRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARA 69

Query: 73 LDTPLWKLL 81
          L  P  +++
Sbjct: 70 LGIPATRIV 78


>gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC
          BAA-613]
          Length = 88

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  RK   + Q+E+ +  G     +S++E G      + +  +   L+    ++L
Sbjct: 6  FGPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVYYPTFETLEKIMVVLEVAPNEML 65


>gi|298243565|ref|ZP_06967372.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
 gi|297556619|gb|EFH90483.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
          Length = 452

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R+ R    LTQ ++     F+ S+IS +E G+   ++  + ILA  L     +
Sbjct: 12 KSVGEKLRSARIAQHLTQSQLAA-PDFSVSYISAIERGQIHPSLRALEILATRLGLSSTQ 70

Query: 80 LL 81
          LL
Sbjct: 71 LL 72


>gi|269926238|ref|YP_003322861.1| transcriptional regulator, XRE family [Thermobaculum terrenum
          ATCC BAA-798]
 gi|269789898|gb|ACZ42039.1| transcriptional regulator, XRE family [Thermobaculum terrenum
          ATCC BAA-798]
          Length = 816

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74
            E   F +  R+ R   KLTQ+E+  ++  +   IS+LE G K T   D + +LA  L+
Sbjct: 2  ESEPEPFGSLLRSFRIRNKLTQEELAEKSNLSVRAISDLERGIKLTPRRDTIELLAQALN 61


>gi|255101457|ref|ZP_05330434.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255307330|ref|ZP_05351501.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 66

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R+  +LTQ+++  + G  +  I  LE GK   ++   I ++  +DTP+ +L 
Sbjct: 4  FTCNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63


>gi|254390453|ref|ZP_05005669.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294816734|ref|ZP_06775376.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|197704156|gb|EDY49968.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294321549|gb|EFG03684.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 285

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP       H +      R       R++R++A LT  E+    G+     S +E  K+ 
Sbjct: 1  MPISPSSSAHAA------RQTVAQRLRDLRRDADLTGSELARICGWTHPKTSRIENAKTP 54

Query: 61 INIDNMIILAHTLDTP 76
           + D++    +    P
Sbjct: 55 PSPDDIRRWCNACGVP 70


>gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
 gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
          Length = 476

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R +F     + +R+E  L+Q  +    G + S+++ +E  +  ++   ++ LA T D  
Sbjct: 6  DRKLFLGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVD 65

Query: 77 LWKL 80
          L  L
Sbjct: 66 LRNL 69


>gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 183

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 30/51 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ AK++ +++ ++ G +  ++S++E G    + + +  +A+ L   
Sbjct: 10 IRDLRRNAKVSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIANALKVS 60


>gi|15614688|ref|NP_242991.1| post-exponential-phase responses transcriptional regulator
          [Bacillus halodurans C-125]
 gi|10174744|dbj|BAB05844.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre) family) [Bacillus halodurans C-125]
          Length = 112

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
          M+     +  R E +L+  E+  R G A+S++S +E   ++  +I  +  ++  LD  + 
Sbjct: 1  MMIGERVKKYRLEKELSLSELAERAGVAKSYLSSIERNIQTNPSIHFLEKISQVLDVSVE 60

Query: 79 KLLK 82
           LL+
Sbjct: 61 SLLQ 64


>gi|23099979|ref|NP_693445.1| post-exponential-phase response transcriptional regulator
          [Oceanobacillus iheyensis HTE831]
 gi|22778210|dbj|BAC14480.1| transcriptional regulator of post-exponential-phase responses
          (PbsX(xre)family) [Oceanobacillus iheyensis HTE831]
          Length = 108

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R E +++  E+  + G A+S++S +E   +S  +I  +  +++ L   + +
Sbjct: 1  MIGEKIKQLRLEKRMSISELAEKAGVAKSYLSSIERNLQSNPSIQFIEKISNVLGVTVNE 60

Query: 80 LL 81
          ++
Sbjct: 61 II 62


>gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 76

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK   L+Q  +  + G +++ I+++ETGK+  ++     +A+ L   ++++ 
Sbjct: 3  NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCMYQIF 60


>gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium
          prausnitzii M21/2]
          Length = 169

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  RK+  L+Q+++  + G ++  I++ E G ++  ++ ++ L+         LLK
Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLK 70


>gi|281355350|ref|ZP_06241844.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
 gi|281318230|gb|EFB02250.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
          Length = 186

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R + +LT  ++  R+G ++ +IS LE  ++  ++  + ++A  L   +  L 
Sbjct: 6  VAHKIKELRLQQQLTIDQLAARSGLSKGYISRLENFRTGASLRALNLVAAALGVEMIDLF 65

Query: 82 K 82
          +
Sbjct: 66 R 66


>gi|319426969|gb|ADV55043.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 108

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ R     +Q+E+  R+G  QS IS++E+G   + + ++I LA  LD  L+
Sbjct: 12 LRDARIRKGFSQRELSARSGVPQSHISKIESGDVDLRMSSLIALARVLDLELF 64


>gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [Nodularia spumigena CCY9414]
 gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [Nodularia spumigena CCY9414]
          Length = 379

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    ++Q+++ N     +  IS +E+G+   +    + LA  L   +  L 
Sbjct: 9  NKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYAPSTTIALRLAKALGCQVEDLF 66


>gi|86145397|ref|ZP_01063728.1| transcriptional regulator, HTH_3 family protein [Vibrio sp.
          MED222]
 gi|85836974|gb|EAQ55094.1| transcriptional regulator, HTH_3 family protein [Vibrio sp.
          MED222]
          Length = 207

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P     +  L   I   R+      ++IR +  +T +E   RTG A+S +S++E  + + 
Sbjct: 10 PSLTLAKETLDQNIEPLRL--GQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 68 TFQAMQKLAMGLQIDMPQLFEP 89


>gi|331091802|ref|ZP_08340634.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330402701|gb|EGG82268.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 106

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R IR    LTQ+ I N      S IS +E  +  +++  ++ + + L+T
Sbjct: 10 GEKLRIIRLSKNLTQEYIANVADVNTSHISNIENNRVKVSLSTLVQICNALNT 62


>gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 190

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+  +LT  ++  +TG   S IS LE  +    ++ ++ LA     PL +L+
Sbjct: 11 VGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIRPTLEQLLPLARVYGVPLDELV 70


>gi|83945214|ref|ZP_00957563.1| hypothetical protein OA2633_00565 [Oceanicaulis alexandrii
          HTCC2633]
 gi|83851384|gb|EAP89240.1| hypothetical protein OA2633_00565 [Oceanicaulis alexandrii
          HTCC2633]
          Length = 240

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          M F    +  R+    TQ E   +    QS++S+LETGKS  + +    LA    
Sbjct: 1  MSFGAFLKARREALGWTQPEAAAKARIEQSYLSKLETGKSFPSEEVFERLAEAYG 55


>gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA]
 gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA]
          Length = 250

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---L 77
          I  ++ + +RK  KLTQK++   TGF Q+ IS  E G   ++  ++ I A  L+     L
Sbjct: 3  ILGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYL 62

Query: 78 WKLLKP 83
          + L KP
Sbjct: 63 FDLAKP 68


>gi|268591080|ref|ZP_06125301.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291313887|gb|EFE54340.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 104

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 32/66 (48%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L  + I   N    R+   L+  E+ +    +Q  +S +E G   ++++ +  +A++LD 
Sbjct: 5  LSPKEIVGGNIYKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQIANSLDI 64

Query: 76 PLWKLL 81
           +  LL
Sbjct: 65 DINCLL 70


>gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC
          43243]
          Length = 188

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+  K+TQKE     G ++  I + E+G+  + ID +  +A+ L+ P  +LL 
Sbjct: 8  GKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQELLS 67

Query: 83 P 83
          P
Sbjct: 68 P 68


>gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 203

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P                 + +R E KLT  ++    G ++S +SE+E  K+   I   
Sbjct: 14 AAPQPPGVTPPR---VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVA 70

Query: 67 IILAHTLDTPLWKLL 81
            L + L   L +L 
Sbjct: 71 WRLTNALGITLDELF 85


>gi|167841007|ref|ZP_02467691.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 194

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 13 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 72


>gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC
          27759]
 gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC
          27759]
          Length = 172

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             + +++   N  R +RKE  +TQ+EI  + G +   +S  E G +  ++  ++ LA  
Sbjct: 10 KTEMIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNTMPDLAILVELADY 69

Query: 73 LDTPLWKLL 81
           D  + +++
Sbjct: 70 YDVDIREII 78


>gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E]
          Length = 206

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             N    RK   L+ +E+ NR G  +  I   ETG+  I  D ++ +A  LD     L
Sbjct: 8  VGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIAEALDVDPADL 66


>gi|308177557|ref|YP_003916963.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
 gi|307745020|emb|CBT75992.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
          Length = 191

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             RN+R+    + + + ++   + S +S +ETG   I +D +I +A  L+T L +L+
Sbjct: 13 QRIRNLRQNLGWSLESLASKASMSVSTLSRIETGSRRIALDQLIPIAKALNTSLDELV 70


>gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 149

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +R +  LTQ+E+ N+    +  +S  ETG++T N+D + +LA TL  P+  LL+
Sbjct: 7  LPQLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLE 63


>gi|255654408|ref|ZP_05399817.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296449131|ref|ZP_06890918.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296880891|ref|ZP_06904839.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296261950|gb|EFH08758.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296428178|gb|EFH14077.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 183

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + IRKE  L+  +I   +G ++S +S++E  +    I  +  + + L      
Sbjct: 6  EIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVNPTISTLKKITNGLKISFTS 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|254422987|ref|ZP_05036705.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
 gi|196190476|gb|EDX85440.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
          Length = 584

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 30/51 (58%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  R++ K+TQ+ + +  G +QSWI ++E G+ +I+ ++ + L   L   
Sbjct: 534 IKAAREQQKITQRALASSLGKSQSWIRDVEKGRFSISFEDQVRLREALGIQ 584


>gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6]
          Length = 200

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R+   LT  ++  +   ++  +S++E G+++  +D +  +A  L   +  
Sbjct: 14 ESVGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSAGMDTLARIARALGVSMSM 73

Query: 80 LL 81
          L 
Sbjct: 74 LF 75


>gi|167565153|ref|ZP_02358069.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis
          EO147]
          Length = 183

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R +  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
          Length = 168

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70

Query: 81 L 81
          +
Sbjct: 71 V 71


>gi|126697922|ref|YP_001086819.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254974024|ref|ZP_05270496.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255091410|ref|ZP_05320888.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255099524|ref|ZP_05328501.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255305380|ref|ZP_05349552.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|255313070|ref|ZP_05354653.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255515827|ref|ZP_05383503.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255648919|ref|ZP_05395821.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260682132|ref|YP_003213417.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260685730|ref|YP_003216863.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306519034|ref|ZP_07405381.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|115249359|emb|CAJ67173.1| Transcriptional regulator, RmlC-type [Clostridium difficile]
 gi|260208295|emb|CBA60727.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260211746|emb|CBE02080.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 183

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + IRKE  L+  +I   +G ++S +S++E  +    I  +  + + L      
Sbjct: 6  EIIAENLKKIRKEKHLSLDKIAQLSGVSKSMLSQIEKCEVNPTISTLKKITNGLKISFTS 65

Query: 80 LLK 82
          L++
Sbjct: 66 LME 68


>gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813]
          Length = 168

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70

Query: 81 L 81
          +
Sbjct: 71 V 71


>gi|312961260|ref|ZP_07775765.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|311284918|gb|EFQ63494.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 262

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R IR++AKL+Q ++   TG +Q  +S +ETG++      +  L   LD PL
Sbjct: 8  GEYLRQIRRQAKLSQLDLALITGVSQRHLSCIETGRAKAGAATLHTLLTALDAPL 62


>gi|302870146|ref|YP_003838783.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|315503577|ref|YP_004082464.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|302573005|gb|ADL49207.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
 gi|315410196|gb|ADU08313.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 216

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ AK++ +++  + G +  ++S++E G    + + +  LA  L   
Sbjct: 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64


>gi|255292223|dbj|BAH89347.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255292806|dbj|BAH89908.1| XRE family transcriptional regulators [uncultured bacterium]
          Length = 156

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R+ R    L+  E+  R G  + ++S+LE  +S  ++  +  L   L   +
Sbjct: 9  EPLRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNM 68

Query: 78 WKLL 81
           +L 
Sbjct: 69 SELF 72


>gi|167754531|ref|ZP_02426658.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402]
 gi|237733830|ref|ZP_04564311.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|167705363|gb|EDS19942.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402]
 gi|229383168|gb|EEO33259.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 135

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R + +LTQ+ + +    ++  IS  E  K+  +I ++I L+      L +LLK
Sbjct: 4  AKKIKTARIKVELTQEHVADELQVSRQTISNWENAKTYPDIISIIKLSDLYQISLDELLK 63


>gi|307133110|ref|YP_003885126.1| putative transcriptional regulator [Dickeya dadantii 3937]
 gi|306530639|gb|ADN00570.1| Putative transcriptional regulator [Dickeya dadantii 3937]
          Length = 106

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F    +  R    L+QK++    G     A + I+  E G    +ID    LA  LD P
Sbjct: 10 VFCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQQLADALDVP 69

Query: 77 L 77
          L
Sbjct: 70 L 70


>gi|258517094|ref|YP_003193316.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780799|gb|ACV64693.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 181

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +RK + +   ++  + G ++ ++SELE    T  ++ +  +   L+  L     
Sbjct: 4  GIRIRELRKNSNINITQLAIKVGISRVYLSELERNIKTPPLETLERICSALNITLVDFFT 63


>gi|257140832|ref|ZP_05589094.1| DNA-binding regulatory protein [Burkholderia thailandensis E264]
          Length = 81

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RKE  ++Q+ + +     +S + ++E G+  + I N++ +A  L     +LL
Sbjct: 17 LGAAIRARRKELVMSQEALADFAEIDRSHMGKIERGERNVTIMNIVRIARALQLLPSELL 76


>gi|149920973|ref|ZP_01909434.1| transcriptional regulator, XRE family with cupin sensor
          [Plesiocystis pacifica SIR-1]
 gi|149818245|gb|EDM77700.1| transcriptional regulator, XRE family with cupin sensor
          [Plesiocystis pacifica SIR-1]
          Length = 199

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N R+ R+   L+   +   +G + + +SE+E  +    +     +A  L   L  LL+
Sbjct: 9  GKNIRSRRQALGLSLDALAQASGVSSTMLSEVERARKNPTVKLAYQIARALGCSLTDLLE 68


>gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
 gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides
          ATCC 17029]
 gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          WS8N]
          Length = 115

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 35/58 (60%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   LTQ+++    G ++S+ISE+E+GK   +   +   AHT++ P+  L++
Sbjct: 4  RLKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIE 61


>gi|107027580|ref|YP_625091.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116693708|ref|YP_839241.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|105896954|gb|ABF80118.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia AU 1054]
 gi|116651708|gb|ABK12348.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia HI2424]
          Length = 180

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60


>gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 91

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN  ++RKE  + Q E+  + G ++  IS +E G    ++   + LA   +  +  + 
Sbjct: 27 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSVLVALSLARVFEVKVEDIF 84


>gi|315149776|gb|EFT93792.1| putative flagellar protein FliS [Enterococcus faecalis TX0012]
          Length = 279

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++    R IRK+  LTQK++        S+ S +E   ST  ID  + +   L+  L + 
Sbjct: 1  MYGQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEF 59

Query: 81 L 81
          +
Sbjct: 60 M 60


>gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 490

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL- 80
           +  R  R+   LTQ+++ +  GF QS++S++E+G+  I +I  +  +A  L      + 
Sbjct: 21 GSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPEDVG 80

Query: 81 LKP 83
          L P
Sbjct: 81 LAP 83


>gi|257422321|ref|ZP_05599311.1| predicted protein [Enterococcus faecalis X98]
 gi|257164145|gb|EEU94105.1| predicted protein [Enterococcus faecalis X98]
 gi|315156032|gb|EFU00049.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
          Length = 279

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++    R IRK+  LTQK++        S+ S +E   ST  ID  + +   L+  L + 
Sbjct: 1  MYGQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEF 59

Query: 81 L 81
          +
Sbjct: 60 M 60


>gi|257084941|ref|ZP_05579302.1| predicted protein [Enterococcus faecalis Fly1]
 gi|256992971|gb|EEU80273.1| predicted protein [Enterococcus faecalis Fly1]
          Length = 279

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++    R IRK+  LTQK++        S+ S +E   ST  ID  + +   L+  L + 
Sbjct: 1  MYGQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEF 59

Query: 81 L 81
          +
Sbjct: 60 M 60


>gi|288947755|ref|YP_003445138.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
 gi|288898271|gb|ADC64106.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
          Length = 79

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  +  R E  L Q E+  R G  Q++IS+ E G   + I+  ++L   L+T L 
Sbjct: 7  RKELGHRLKVRRTELGLNQTELAERIGLTQAYISQWELGTRAMRIEQAVVLTQALNTTLG 66

Query: 79 KLL 81
           L+
Sbjct: 67 ALV 69


>gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 115

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+ I       +R E  LTQ ++    G +   IS +E G +  ++  +  +A  L + L
Sbjct: 5  EKKI-GKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSL 63

Query: 78 WKLL 81
           +  
Sbjct: 64 KQFF 67


>gi|50084796|ref|YP_046306.1| putative transcription regulator protein [Acinetobacter sp. ADP1]
 gi|49530772|emb|CAG68484.1| putative transcription regulator protein [Acinetobacter sp. ADP1]
          Length = 190

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +R E   T  E+ NR+  +++ IS +E   +      +  LA  LD  L  L 
Sbjct: 10 QRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLEKLAVALDITLVSLF 67


>gi|75761993|ref|ZP_00741910.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74490526|gb|EAO53825.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 143

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  +  R++   +Q+ +  +   ++  +S+ ETGK+  NI  +I L+      + +
Sbjct: 1  MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPNIGVIIDLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 66

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R++  L+Q+++       QS I  +E G S+  +  +  LA  L+ P+ + 
Sbjct: 1  MLGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGISSPTLKTLEKLARALEVPVHEF 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|304397398|ref|ZP_07379276.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304355016|gb|EFM19385.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 185

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+   L+Q+ +  + G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLAQIRQTLGLSQRRVAEQAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|291460636|ref|ZP_06600026.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416827|gb|EFE90546.1| toxin-antitoxin system, antitoxin component, Xre family
          [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 107

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R+ + +TQKE+  RTG AQ+ IS+LE G +  +I  +  LA  +   L     P
Sbjct: 44 ARQRSGMTQKELAERTGIAQADISKLEHGNANPSIRTLQRLAKGMGMVLKIEFAP 98


>gi|229829934|ref|ZP_04456003.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles
          DSM 14600]
 gi|229791232|gb|EEP27346.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles
          DSM 14600]
          Length = 211

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R  R +AKLTQ++     G ++  IS  E  KS  +I +++ ++      L  LLK
Sbjct: 4  GSKIRKSRVDAKLTQEQAAEALGISRQTISNWENEKSYPDIVSVLKMSDLYRVSLDYLLK 63


>gi|271964064|ref|YP_003338260.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270507239|gb|ACZ85517.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 277

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   D        F    R  R++A L+Q ++  RTGFA   IS  ETG+     D +  
Sbjct: 4  PKDLDPTTSPIAFFGYELRRYRQQAGLSQGKLARRTGFALGTISMAETGRRPPTEDFVRR 63

Query: 69 LAHTLDTP 76
              L   
Sbjct: 64 CDEALGVE 71


>gi|227500450|ref|ZP_03930512.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098]
 gi|227217513|gb|EEI82832.1| UDP-glucose 6-dehydrogenase [Anaerococcus tetradius ATCC 35098]
          Length = 492

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RKE  LTQ ++   TG  ++ IS LE    T +ID +  +   L   +  L +
Sbjct: 17 RKEMGLTQAKLAEMTGINRAMISRLEQADYTPSIDQLQAIGEVLHFEIVDLFE 69


>gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator
          [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator
          [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 125

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          + F    +  R    L+Q ++  +   ++  IS+ E G +T +++N++ LA   +  L  
Sbjct: 4  LQFSKQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNISLDT 63

Query: 80 LL 81
          L+
Sbjct: 64 LV 65


>gi|163790412|ref|ZP_02184843.1| putative transcriptional regulator [Carnobacterium sp. AT7]
 gi|159874316|gb|EDP68389.1| putative transcriptional regulator [Carnobacterium sp. AT7]
          Length = 170

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R     +Q  + +    ++  IS+ E G S  ++ N++ L++  +  + +LL
Sbjct: 3  LGERLKQSRTNKGFSQTNVADHLNISRQSISKWENGNSLPDLANLVKLSNYYEVSIDELL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1]
 gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1]
          Length = 180

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR    ++Q+E+  R+G   S IS++E      ++ ++  +   +   + +  
Sbjct: 3  VGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGEFF 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP3-BS71]
 gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP3-BS71]
 gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141]
          Length = 158

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|294509161|ref|YP_003566089.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
 gi|294352085|gb|ADE72409.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
          Length = 80

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN +  R +A LTQ ++  + G  +  IS +E GK    +   + + + ++  L ++
Sbjct: 12 ILKNNVKTFRVQADLTQHQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYVVNRTLDEI 71

Query: 81 L 81
           
Sbjct: 72 F 72


>gi|311744324|ref|ZP_07718128.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
 gi|311312497|gb|EFQ82410.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
          Length = 167

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R++A+L+ +++      +  ++S++E G    + + +  +A  L      L
Sbjct: 37 LGEYLREQRRQAQLSLRQLSEAADVSNPYLSQIERGLRRPSAEVLQQIAKALRISAESL 95


>gi|284043418|ref|YP_003393758.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947639|gb|ADB50383.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 89

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDT 75
           E +      R +R+    +Q+ + + +     +++ ++E G   +   N+  LA  L+ 
Sbjct: 6  PELVALGARVRELRERVGKSQETLAHDSDELHWTYVGQIERGLRNVTFKNLRRLARGLEV 65

Query: 76 PLWKLLKP 83
           + +L +P
Sbjct: 66 DVAELFRP 73


>gi|282167052|gb|ADA81068.1| DNA-binding protein, putative [Staphylococcus aureus]
          Length = 182

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N R IR + +++  ++   T  +++ + ++E G +   I  +  +A  L+ PL  
Sbjct: 6  EIIATNLRKIRNQKRMSLDDLSKLTSVSKAVLFQIEKGTTNPTISTLWKIAEGLNIPLSN 65

Query: 80 LL 81
          ++
Sbjct: 66 II 67


>gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis
          Bt407]
 gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis
          Bt407]
 gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 149

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+    +Q+++  + G  +  + + E  KS  +I N+I+L+   +  L +
Sbjct: 1  MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIHNLILLSEMYNVTLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|217971592|ref|YP_002356343.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|217496727|gb|ACK44920.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
          Length = 129

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N RKE  + Q  + +  G +Q+  S LE+GKST ++D +   A  L+ P  +L 
Sbjct: 16 VANKRKEFGIEQSVMADCMGLSQASYSRLESGKSTFSVDQLFECAQALNIPAAELF 71


>gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 136

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +I L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|167632540|ref|ZP_02390867.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|254685775|ref|ZP_05149634.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis
          str. CNEVA-9066]
 gi|254723182|ref|ZP_05184970.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis
          str. A1055]
 gi|254738245|ref|ZP_05195948.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis
          str. Western North America USA6153]
 gi|254742587|ref|ZP_05200272.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis
          str. Kruger B]
 gi|254752560|ref|ZP_05204596.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis
          str. Vollum]
 gi|254761076|ref|ZP_05213100.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis
          str. Australia 94]
 gi|167532838|gb|EDR95474.1| DNA-binding protein [Bacillus anthracis str. A0442]
          Length = 66

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  + PL  + 
Sbjct: 10 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF 61


>gi|165869157|ref|ZP_02213817.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167637409|ref|ZP_02395689.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170684835|ref|ZP_02876060.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170704913|ref|ZP_02895378.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177649881|ref|ZP_02932882.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190565074|ref|ZP_03017995.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813967|ref|YP_002813976.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229602589|ref|YP_002867433.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|164715883|gb|EDR21400.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167514916|gb|EDR90282.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170129768|gb|EDS98630.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170671095|gb|EDT21833.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172083833|gb|EDT68892.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190564391|gb|EDV18355.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227007141|gb|ACP16884.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229266997|gb|ACQ48634.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 65

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  + PL  + 
Sbjct: 9  RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF 60


>gi|153814674|ref|ZP_01967342.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC
          27756]
 gi|317501120|ref|ZP_07959326.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331090138|ref|ZP_08339026.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145848168|gb|EDK25086.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC
          27756]
 gi|316897507|gb|EFV19572.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330402084|gb|EGG81656.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 124

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +RK+   TQ +   +   ++   S  ETGK   ++D +I +A+     L  LL
Sbjct: 6  LAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETGKRIPDLDIIIRIANIYHISLENLL 65

Query: 82 K 82
           
Sbjct: 66 T 66


>gi|118477255|ref|YP_894406.1| MerR family transcriptional regulator [Bacillus thuringiensis
          str. Al Hakam]
 gi|118416480|gb|ABK84899.1| transcriptional regulator, MerR family [Bacillus thuringiensis
          str. Al Hakam]
          Length = 181

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           LT KE+        S +S++E G +  +I  + +LA  LD P +  L
Sbjct: 18 GLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTFSFL 65


>gi|108800307|ref|YP_640504.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119869435|ref|YP_939387.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|126435930|ref|YP_001071621.1| XRE family transcriptional regulator [Mycobacterium sp. JLS]
 gi|108770726|gb|ABG09448.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119695524|gb|ABL92597.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
 gi|126235730|gb|ABN99130.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS]
          Length = 193

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R++   T +E+  R+    S +S LE+GK  + +D++  LA  L     +LL+
Sbjct: 17 KRLRELRRQRGFTLEEVAARSAIDVSTLSRLESGKRRLALDHLPRLAAALAVTTDELLR 75


>gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1]
          Length = 482

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q ++    G + S+++ +E  +  ++   ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|325264449|ref|ZP_08131179.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324030111|gb|EGB91396.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 100

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  + +R    LTQ ++  R G  +S IS  ETG    + D +I ++         LL
Sbjct: 4  FGNTLKTLRLLNNLTQAKLAQRLGVTKSVISAYETGLRMPSYDILISISQIFKVTTDYLL 63


>gi|306823918|ref|ZP_07457292.1| conserved hypothetical protein [Bifidobacterium dentium ATCC
          27679]
 gi|309802457|ref|ZP_07696564.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium
          JCVIHMP022]
 gi|304552916|gb|EFM40829.1| conserved hypothetical protein [Bifidobacterium dentium ATCC
          27679]
 gi|308221057|gb|EFO77362.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium
          JCVIHMP022]
          Length = 408

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R    +TQ+++    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 205

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +RK   L+ KE+  R   +   +S++E   S+ ++  +  LA + D PL
Sbjct: 25 LGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLSSPSVRTLNKLATSFDVPL 80


>gi|255292272|dbj|BAH89394.1| XRE family transcriptional regulator [uncultured bacterium]
          Length = 172

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R+ R    L+  E+  R G  + ++S+LE  +S  ++  +  L   L   +
Sbjct: 21 EPLRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNM 80

Query: 78 WKLL 81
           +L 
Sbjct: 81 SELF 84


>gi|222081095|ref|YP_002540458.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725774|gb|ACM28863.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 200

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +    R+ M      R +R    +T KE+  R+G + S IS++E  + +   +N+I LA
Sbjct: 3  DTATEERDEMDLGKRVRALRANIDMTIKEVSLRSGMSASAISKIENNQLSPTYENIIKLA 62

Query: 71 HTLDTPLWKLL 81
            L   + +L 
Sbjct: 63 RGLGVDISELF 73


>gi|182677050|ref|YP_001831196.1| XRE family transcriptional regulator [Beijerinckia indica subsp.
          indica ATCC 9039]
 gi|182632933|gb|ACB93707.1| transcriptional regulator, XRE family [Beijerinckia indica subsp.
          indica ATCC 9039]
          Length = 488

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 6  RDEPHLSDAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +   H +      R IF     + +R+E ++TQ  +      + S+++ +E  +  I + 
Sbjct: 3  QTLAHSAGQADASRKIFAGPRLKRLRRERQITQARMAEELNVSPSYLNLMERNQRPITVQ 62

Query: 65 NMIILAHTLDTPLWKLL 81
           +I L           L
Sbjct: 63 VLIRLTDVYGVDPRDFL 79


>gi|171741654|ref|ZP_02917461.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC
          27678]
 gi|283455032|ref|YP_003359596.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1]
 gi|171277268|gb|EDT44929.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC
          27678]
 gi|283101666|gb|ADB08772.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1]
          Length = 408

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R    +TQ+++    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|154500312|ref|ZP_02038350.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC
          29799]
 gi|150271044|gb|EDM98318.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC
          29799]
          Length = 111

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R++  LT++++         +  +LE G S ++ID +I L+H++  P+  +L
Sbjct: 10 GQRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMHLPMEYIL 68


>gi|45862267|gb|AAS78882.1| TrbA [Cloning vector pLAFR]
 gi|295443857|dbj|BAJ06609.1| TrbA [Cloning vector pKS800]
          Length = 128

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           IF  N   +  E  +T+ E+  R G + S++S+L  GK+  ++  M  +A  
Sbjct: 11 QIFFTNILRLLDERGMTKHELSERAGVSISFLSDLTNGKANPSLKVMEAIADA 63


>gi|29350141|ref|NP_813644.1| hypothetical protein BT_4733 [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|253571670|ref|ZP_04849076.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298384450|ref|ZP_06994010.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|29342053|gb|AAO79838.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|251838878|gb|EES66963.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262729|gb|EFI05593.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 101

 Score = 51.5 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK+AK+TQ E+  R G  +S+IS +E+G++   +     + + L 
Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 92


>gi|332981042|ref|YP_004462483.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698720|gb|AEE95661.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 209

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     ++R   +LTQ+++  + G ++  IS  ET ++  N D +  +   L+  +  LL
Sbjct: 4  FGKLLMDLRNAKQLTQEDVAEKLGVSRQTISSWETNRTKPNYDQIKQICAILEVDMNTLL 63


>gi|325962046|ref|YP_004239952.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468133|gb|ADX71818.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 504

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++RK+A LT  ++    G A S +S +E GK    +  +  LA  L+  + +LL
Sbjct: 36 LGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQHLASALNVSIDQLL 95


>gi|228942395|ref|ZP_04104933.1| Transcription regulator, probable-related protein [Bacillus
          thuringiensis serovar berliner ATCC 10792]
 gi|228981964|ref|ZP_04142258.1| Transcription regulator, probable-related protein [Bacillus
          thuringiensis Bt407]
 gi|228777725|gb|EEM25998.1| Transcription regulator, probable-related protein [Bacillus
          thuringiensis Bt407]
 gi|228817236|gb|EEM63323.1| Transcription regulator, probable-related protein [Bacillus
          thuringiensis serovar berliner ATCC 10792]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +++NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L
Sbjct: 4  LYLNNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63

Query: 81 L 81
           
Sbjct: 64 F 64


>gi|166030371|ref|ZP_02233200.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC
          27755]
 gi|166029840|gb|EDR48597.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC
          27755]
          Length = 159

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N    RK+ K+TQKE+  + G   + IS  E G ++I+ID +  +       + 
Sbjct: 6  KETVAKNLLYYRKKNKITQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIFGISVN 65

Query: 79 KL 80
           +
Sbjct: 66 DM 67


>gi|126652726|ref|ZP_01724878.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905]
 gi|126590415|gb|EAZ84534.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905]
          Length = 134

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F +  +  RK  KLTQ+++  +    +  IS  E G ST + + +++L+  LD     
Sbjct: 1  MMFNHRLKAARKAKKLTQEQLAGKLQTTKGTISNYENGHSTPSNEMLVLLSKILDVTTDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257076425|ref|ZP_05570786.1| transcriptional regulatory protein [Ferroplasma acidarmanus fer1]
          Length = 192

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             R +RK   ++QKE+   +G +QS+I+ LE G+     D +  +   L+
Sbjct: 6  EELRKMRKSLGISQKELARISGVSQSYIARLEKGEINPAYDKVRKIFEYLN 56


>gi|326332010|ref|ZP_08198295.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium
          Broad-1]
 gi|325950148|gb|EGD42203.1| transcriptional regulator, PbsX family [Nocardioidaceae bacterium
          Broad-1]
          Length = 147

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               +  R  A+++ +++ ++ G +  ++S++E G    + + +  +A  L     ++
Sbjct: 13 LGEYLKEQRISAEMSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIAKALRISAEQV 71


>gi|261881030|ref|ZP_06007457.1| transcriptional regulator [Prevotella bergensis DSM 17361]
 gi|270332210|gb|EFA42996.1| transcriptional regulator [Prevotella bergensis DSM 17361]
          Length = 101

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            RKEAK+TQ E+  + G  +S+IS++E G     +     L ++L 
Sbjct: 45 QARKEAKMTQTELAEKAGTTKSYISKIENGLIEPGVGLFFRLVNSLG 91


>gi|167618929|ref|ZP_02387560.1| DNA-binding protein [Burkholderia thailandensis Bt4]
          Length = 192

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S+     +  LA+ L   L  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|160915348|ref|ZP_02077560.1| hypothetical protein EUBDOL_01356 [Eubacterium dolichum DSM 3991]
 gi|158432739|gb|EDP11028.1| hypothetical protein EUBDOL_01356 [Eubacterium dolichum DSM 3991]
          Length = 177

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R    LT +E+ +R+   + +IS++E   ++ +I  +  L   L T L    K
Sbjct: 4  GAKLKALRLRNDLTLEEVASRSELTKGFISQVERNLTSPSISTLEYLLEALGTNLADFFK 63


>gi|150018305|ref|YP_001310559.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904770|gb|ABR35603.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+++ +  G  +  I  +E GK   ++   I +   L   L  + 
Sbjct: 5  KMKSARASMDLSQEQLADIVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDIF 61


>gi|281427992|ref|YP_003354946.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis
          KF147]
 gi|281376619|gb|ADA66104.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis
          KF147]
          Length = 201

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +RK+   TQ+ +  +       I  +E G + +++D +  +++ L  P+ +L +
Sbjct: 5  RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61


>gi|281491183|ref|YP_003353163.1| XRE family transcriptional regulator [Lactococcus lactis subsp.
          lactis KF147]
 gi|281374924|gb|ADA64442.1| Transcriptional regulator, XRE family [Lactococcus lactis subsp.
          lactis KF147]
          Length = 201

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +RK+   TQ+ +  +       I  +E G + +++D +  +++ L  P+ +L +
Sbjct: 5  RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61


>gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408]
 gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408]
          Length = 163

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +   H     + E   F    + +RKE   TQ+E+  +    +  +S  E G+S  + +N
Sbjct: 4  KALLHNERKSIYE-GFFSKKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHEN 62

Query: 66 MIILAHTLDTPL 77
          +  LA      L
Sbjct: 63 VYCLAKLYGQTL 74


>gi|261350497|ref|ZP_05975914.1| toxin-antitoxin system, antitoxin component, Xre family
          [Methanobrevibacter smithii DSM 2374]
 gi|288861280|gb|EFC93578.1| toxin-antitoxin system, antitoxin component, Xre family
          [Methanobrevibacter smithii DSM 2374]
          Length = 108

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I       +R+E   TQ+++ N  G  QS +S++E G+   N+  +  L    +     L
Sbjct: 4  IVGTTLNKLRRENGYTQEQVSNYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|221195415|ref|ZP_03568470.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
 gi|221184602|gb|EEE16994.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626]
          Length = 77

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R +R +A LTQ  +  R    QS++S++E+G+  + +  +   A  L   ++KL
Sbjct: 8  LVGRSLRKLRCDAGLTQVAVAQRLRTPQSFVSKVESGERGLKLGEVYSYAEALGIDVFKL 67

Query: 81 LK 82
          ++
Sbjct: 68 VE 69


>gi|197301649|ref|ZP_03166720.1| hypothetical protein RUMLAC_00375 [Ruminococcus lactaris ATCC
          29176]
 gi|197299276|gb|EDY33805.1| hypothetical protein RUMLAC_00375 [Ruminococcus lactaris ATCC
          29176]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E++   N+ + +R  A L+Q ++    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKEQLHLKNHLKEVRTAANLSQAQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174]
 gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174]
          Length = 126

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N    +R+ A L+QK++  + G +Q+ I+  E G+ T ++     ++     P+ ++  P
Sbjct: 8  NKLAQLRQNAHLSQKQLAQKLGVSQASINYWENGQRTPSVKAAQKISDYFKMPISEIFSP 67


>gi|146322242|ref|YP_001174729.1| hypothetical protein pGdh442_p22 [Lactococcus lactis]
 gi|145968733|gb|ABQ00011.1| hypothetical protein [Lactococcus lactis]
          Length = 201

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +RK+   TQ+ +  +       I  +E G + +++D +  +++ L  P+ +L +
Sbjct: 5  RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61


>gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 191

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ AK++ +++  + G +  ++S++E G    + + +  LA  L   
Sbjct: 14 IRDLRRNAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64


>gi|153002768|ref|YP_001368449.1| XRE family transcriptional regulator [Shewanella baltica OS185]
 gi|160877511|ref|YP_001556827.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|151367386|gb|ABS10386.1| transcriptional regulator, XRE family [Shewanella baltica OS185]
 gi|160863033|gb|ABX51567.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
 gi|315269711|gb|ADT96564.1| helix-turn-helix domain protein [Shewanella baltica OS678]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK   ++Q ++       +S++  +E G+  I ++    LA  L   +  LL
Sbjct: 8  FGAKLREERKRLGISQDKMALLAEIDRSYVGRIERGEVNITLEKAYQLAEVLGCDIRVLL 67


>gi|89076037|ref|ZP_01162400.1| putative transcriptional regulator, [Photobacterium sp. SKA34]
 gi|89048272|gb|EAR53853.1| putative transcriptional regulator, [Photobacterium sp. SKA34]
          Length = 208

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  + ++   ++ I   ++      + IR    LT +E   RTG A+S +S++E  + + 
Sbjct: 11 PSMRIEKTQAAEHIAPLKL--GERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQISP 68

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 69 TYQAMQKLATGLAIDIPQLFEP 90


>gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305]
 gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e]
 gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305]
 gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e]
 gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229]
          Length = 202

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84


>gi|325264311|ref|ZP_08131042.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324030382|gb|EGB91666.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 139

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +N +  RK A LTQKE+  + G A+  I + E+ K     + ++ +A  L+  L+ 
Sbjct: 1  MSVGDNIKKARKNAGLTQKELAEKCGAAEITIRQYESSKREPRNEQLMKIARLLNVELYD 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
 gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100]
          Length = 158

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 159

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  LA  L      L
Sbjct: 9  LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67


>gi|257068924|ref|YP_003155179.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Brachybacterium faecium DSM 4810]
 gi|256559742|gb|ACU85589.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Brachybacterium faecium DSM 4810]
          Length = 517

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ R+ + LTQ ++ +  G +QS ++ +E G+  + ++ +  +   LD+ L  L
Sbjct: 21 IRDARQHSGLTQAQLASELGTSQSAVNRIEKGQQNLTLETLSKIGSALDSELVGL 75


>gi|255284549|ref|ZP_05349104.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469]
 gi|255264903|gb|EET58108.1| UDP-glucose 6-dehydrogenase [Bryantella formatexigens DSM 14469]
          Length = 505

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RKE  LTQ+++   TG  ++ +S LE      +I  +  L   L     +L
Sbjct: 12 LLAETTARLRKEKSLTQQQLAELTGINRAMLSRLEKQNYLPSIPQLEKLGEILGFEPAEL 71

Query: 81 LK 82
            
Sbjct: 72 FT 73


>gi|302345887|ref|YP_003814240.1| putative toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella melaninogenica ATCC 25845]
 gi|302149386|gb|ADK95648.1| putative toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella melaninogenica ATCC 25845]
          Length = 103

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    +  RK+ K+TQ+++ ++ G  + +IS +E G S + +   + +A+ L 
Sbjct: 43 YAELLKEQRKQQKMTQQQLADKIGKKREYISNIERGNSDMQLSTFMQIANALG 95


>gi|229179916|ref|ZP_04307262.1| Helix-turn-helix domain protein [Bacillus cereus 172560W]
 gi|228603597|gb|EEK61072.1| Helix-turn-helix domain protein [Bacillus cereus 172560W]
          Length = 277

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+       +I++ +  +  L  LL
Sbjct: 18 FGEKLFKLRKEKGLSQEALAEKLNTTRQGVSKWENGQGFPETGKLIMIGNVFEVSLDYLL 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium
          aurimucosum ATCC 700975]
 gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein
          [Corynebacterium aurimucosum ATCC 700975]
 gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium
          aurimucosum ATCC 700975]
          Length = 468

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGV 59


>gi|218676580|ref|YP_002395399.1| predicted transcriptional regulator [Vibrio splendidus LGP32]
 gi|218324848|emb|CAV26582.1| predicted transcriptional regulator [Vibrio splendidus LGP32]
          Length = 207

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P     +  L   I   R+      ++IR +  +T +E   RTG A+S +S++E  + + 
Sbjct: 10 PSLTLAKETLDQNIEPLRL--GQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 68 TFQAMQKLAMGLQIDMPQLFEP 89


>gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108]
 gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108]
          Length = 115

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N +N+RK   LTQ+++  RTG ++  I   ET +   +++++ +LA   +T   
Sbjct: 2  KTTVGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|167566464|ref|ZP_02359380.1| gp68 [Burkholderia oklahomensis EO147]
 gi|167574272|ref|ZP_02367146.1| gp68 [Burkholderia oklahomensis C6786]
 gi|237507945|ref|ZP_04520660.1| gp68 [Burkholderia pseudomallei MSHR346]
 gi|235000150|gb|EEP49574.1| gp68 [Burkholderia pseudomallei MSHR346]
          Length = 128

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++P
Sbjct: 66  VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIEP 123


>gi|163855579|ref|YP_001629877.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163259307|emb|CAP41607.1| predicted transcriptional regulator [Bordetella petrii]
          Length = 97

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R E  + Q+E+    G A+S + ++E G+    +  ++ ++  L     +L+
Sbjct: 25 FGKAVRAARVEQGIAQEELGAMAGIARSHMGKIERGEHMPTLALILKISVALRISAAELM 84


>gi|163841313|ref|YP_001625718.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
 gi|162954789|gb|ABY24304.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
          Length = 194

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R  R     +   +  +   + S +S +ETG   I +D ++ LA  L   L +L++
Sbjct: 15 QRIRAARLARGWSLDSLAAKCALSPSTLSRIETGNRRIALDQLVPLAKALGMTLDELVE 73


>gi|86158292|ref|YP_465077.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85774803|gb|ABC81640.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 81

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D    E        R  R+   +TQ+ +      + +++S +E G        ++ +A  
Sbjct: 10 DPRREELRRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARA 69

Query: 73 LDTPLWKLL 81
          L  P  +++
Sbjct: 70 LGIPATRIV 78


>gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 135

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKL 80
          F N  +++R+E  LTQKE+ +  G +   IS  E  G     + N   LA   D  +  L
Sbjct: 3  FGNKIKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRTMKNFEKLAEIFDVNVNYL 62

Query: 81 LK 82
          L 
Sbjct: 63 LT 64


>gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
 gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
          Length = 210

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RK   +TQ E+  + G  Q  +   ET +  I +D MI ++  L+  L  LL
Sbjct: 4  QIAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIRMDKMIEMSEILNVSLAYLL 60


>gi|226304066|ref|YP_002764024.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226183181|dbj|BAH31285.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 214

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+  +LT  ++    G  + ++S+LE      ++  +I +   L+ P+  L +
Sbjct: 19 GARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGSLFE 78


>gi|254436317|ref|ZP_05049823.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27]
 gi|207088007|gb|EDZ65280.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27]
          Length = 132

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R++   N  +  R    LTQ  +  +   +QS+++ +E G+    +  +  +A  L  
Sbjct: 59  VKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVKALKQIAKVLGV 118

Query: 76  PLWKLL 81
            +  L+
Sbjct: 119 DIDDLV 124


>gi|254385553|ref|ZP_05000879.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194344424|gb|EDX25390.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 126

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R++A+L+ +++    G +  ++S++E G    + D +  LA  L      L
Sbjct: 9  LGEYLREQRRQAQLSLRQLAEAAGVSNPYLSQIERGLRKPSADILQQLAKALRISAETL 67


>gi|150398411|ref|YP_001328878.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150029926|gb|ABR62043.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 125

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R +R+   +TQKE+    G + +++S LE GK    + D +  +A   + 
Sbjct: 4  FGEAVRELRRRKGVTQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNV 58


>gi|30263168|ref|NP_845545.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47528533|ref|YP_019882.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186017|ref|YP_029269.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|52142313|ref|YP_084521.1| helix-turn-helix family DNA-binding protein [Bacillus cereus
          E33L]
 gi|65320496|ref|ZP_00393455.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|229012438|ref|ZP_04169613.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
 gi|30257802|gb|AAP27031.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47503681|gb|AAT32357.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179944|gb|AAT55320.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|51975782|gb|AAU17332.1| DNA-binding protein, helix-turn-helix family [Bacillus cereus
          E33L]
 gi|228748797|gb|EEL98647.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
          Length = 69

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  + PL  + 
Sbjct: 13 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF 64


>gi|53721509|ref|YP_110494.1| MerR family transcriptional regulator [Burkholderia pseudomallei
          K96243]
 gi|126443308|ref|YP_001061732.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          668]
 gi|126457392|ref|YP_001074677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1106a]
 gi|134282910|ref|ZP_01769612.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          305]
 gi|167921777|ref|ZP_02508868.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          BCC215]
 gi|226196538|ref|ZP_03792119.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          Pakistan 9]
 gi|237509401|ref|ZP_04522116.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          MSHR346]
 gi|242312333|ref|ZP_04811350.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b]
 gi|254198938|ref|ZP_04905356.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          S13]
 gi|254265312|ref|ZP_04956177.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710a]
 gi|254296722|ref|ZP_04964176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          406e]
 gi|52211923|emb|CAH37928.1| putative MerR-family transcriptional regulator [Burkholderia
          pseudomallei K96243]
 gi|126222799|gb|ABN86304.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          668]
 gi|126231160|gb|ABN94573.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106a]
 gi|134245558|gb|EBA45650.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          305]
 gi|157806591|gb|EDO83761.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          406e]
 gi|169657110|gb|EDS88504.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          S13]
 gi|225931414|gb|EEH27420.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          Pakistan 9]
 gi|235001606|gb|EEP51030.1| transcriptional regulator PuuR [Burkholderia pseudomallei
          MSHR346]
 gi|242135572|gb|EES21975.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b]
 gi|254216314|gb|EET05699.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710a]
          Length = 183

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R +  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|21223969|ref|NP_629748.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|3192007|emb|CAA19406.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 63

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              +  R +  ++Q  +  R G +  ++S  E G+   N  NM++L   L   L ++
Sbjct: 4  GRKLKEARNKRGMSQAAVAARMGLSGLYVSYWENGRYAPNGVNMVLLLRALGCELEEV 61


>gi|293369656|ref|ZP_06616234.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CMC 3f]
 gi|292635360|gb|EFF53874.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CMC 3f]
          Length = 101

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK+AK+TQ E+  R G  +S+IS +E+G++   +     + + L 
Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIINALG 92


>gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis
          M50/1]
          Length = 382

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R +  L Q E   + G +   +S+ E G S  +++N+ +++  LD  +  
Sbjct: 5  MTMAENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLSCPSVENLCVISEILDVSIDT 64

Query: 80 LL 81
          L+
Sbjct: 65 LI 66


>gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891]
 gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891]
          Length = 182

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             F+ +R++A L+Q+E+  R G    +IS++E    + ++ ++  L   + T + +  
Sbjct: 6  GTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEFF 64


>gi|212695608|ref|ZP_03303736.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677281|gb|EEB36888.1| hypothetical protein ANHYDRO_00125 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 68

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++  N+ + +RKE   +Q+++ +  G +++ IS +ETG+        +IL   L+   
Sbjct: 3  DKLVLKNHLKEVRKEKDYSQQQLADEVGVSRNTISSIETGQFNPTAKLALILCIALEKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|86751307|ref|YP_487803.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          HaA2]
 gi|86574335|gb|ABD08892.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          HaA2]
          Length = 481

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q +I    G + S+I+ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112]
 gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215]
 gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13]
 gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13]
 gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          Pakistan 9]
          Length = 202

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84


>gi|326623794|gb|EGE30139.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Dublin str. 3246]
          Length = 231

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   E+    G   + IS LETGK     +  +  LA  L   + +L 
Sbjct: 4  GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|322714235|gb|EFZ05806.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. A50]
          Length = 231

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   E+    G   + IS LETGK     +  +  LA  L   + +L 
Sbjct: 4  GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis
          SP1PR4]
 gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis
          SP1PR4]
          Length = 71

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN RN+R EA LTQ+E+ +  G  +  ++ +E  K +  ++    +A  L  PL  + 
Sbjct: 7  NNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64


>gi|300854554|ref|YP_003779538.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300434669|gb|ADK14436.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 190

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N + +R + KL+   +   +G ++  I ++E G+S   I+ +  LA+ L  P   L
Sbjct: 6  IIASNLKKLRSDKKLSLSNLSELSGVSKVMIGQIERGQSNPTINTIWKLANGLKVPYTVL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 113

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              + +R+   L+Q ++ N  G +Q  +S++E G   +N+  +  L     
Sbjct: 5  GQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGNRNLNLSLLDKLCALYG 56


>gi|194291408|ref|YP_002007315.1| transcriptional regulator Xre family [Cupriavidus taiwanensis LMG
          19424]
 gi|193225312|emb|CAQ71256.1| putative transcriptional regulator, XRE family [Cupriavidus
          taiwanensis LMG 19424]
          Length = 198

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++ +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 76


>gi|168188074|ref|ZP_02622709.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
 gi|169294075|gb|EDS76208.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
          Length = 184

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I   N + IR +  ++   +   TG +++ + ++E G+S   +  +  +A  L   
Sbjct: 7  IIGKNLKTIRNKKNMSLDNVCKLTGVSKAMLGQIERGESNPTVSTLWRIATGLKIS 62


>gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B]
 gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B]
 gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Weltevreden str. HI_N05-537]
 gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica
          subsp. enterica serovar Typhimurium str. D23580]
 gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
 gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 231

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   E+    G   + IS LETGK     +  +  LA  L   + +L 
Sbjct: 4  GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
 gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar
          Choleraesuis str. SC-B67]
          Length = 259

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   E+    G   + IS LETGK     +  +  LA  L   + +L 
Sbjct: 4  GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|28563950|ref|NP_788259.1| hypothetical protein OB3538 [Oceanobacillus iheyensis HTE831]
          Length = 81

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R  RK+  LTQ+E+          I +LE G+ T  +  +       D  + +L +
Sbjct: 2  GSKMREARKKKGLTQEEVAEICNLDDKHIGKLERGEKTPLVTTLFKYWKATDIDVNRLFQ 61


>gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51]
 gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 63

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RKE  ++Q+++  R   ++  I+ +E  K    +     LA  L   + +L 
Sbjct: 3  NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELF 60


>gi|294499973|ref|YP_003563673.1| DNA-binding protein [Bacillus megaterium QM B1551]
 gi|295705350|ref|YP_003598425.1| DNA-binding protein [Bacillus megaterium DSM 319]
 gi|294349910|gb|ADE70239.1| DNA-binding protein [Bacillus megaterium QM B1551]
 gi|294803009|gb|ADF40075.1| DNA-binding protein [Bacillus megaterium DSM 319]
          Length = 183

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I   N   +RK   LT  ++   TG +++ ++++E GKS+  +  +  +A+ L   
Sbjct: 7  IIAKNLVKLRKNRNLTLDQVSELTGVSKAMLAQIEKGKSSPTVTTLWKIANGLQVS 62


>gi|291618017|ref|YP_003520759.1| PuuR [Pantoea ananatis LMG 20103]
 gi|291153047|gb|ADD77631.1| PuuR [Pantoea ananatis LMG 20103]
          Length = 185

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+   L+Q+ +    G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603]
 gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603]
          Length = 118

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I      ++RKE KLTQ++I    G ++  IS+ E G    + +N+  LA   + P+  L
Sbjct: 3  IIGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPIDYL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60]
 gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60]
          Length = 222

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  +  RK A LTQ E+  ++G  Q  IS+LE+G    +   ++ +A  +   
Sbjct: 3  ETIGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESG-RNESSTKLVEMAEAMGVS 58


>gi|256833482|ref|YP_003162209.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM
          20603]
 gi|256687013|gb|ACV09906.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM
          20603]
          Length = 141

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
            ++D    ER+       +IR+   ++Q+E+ + TG ++  IS +E G +  N  ++  
Sbjct: 4  KKIADMTQAERVEAAATIADIRERLGISQQELSDATGISRQTISNIERGATRPNSKSLEK 63

Query: 69 LAHTLDTP 76
          +   L   
Sbjct: 64 IFEALGVS 71


>gi|237736495|ref|ZP_04566976.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421537|gb|EEO36584.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 187

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R   KLT KE+  + G   S +S++E      +I  +  ++  LD PL+   
Sbjct: 10 LGKKIQNYRLNKKLTIKELSEKIGMTSSMLSQIERDLVNPSIATLRAISKALDVPLFMFF 69

Query: 82 K 82
          K
Sbjct: 70 K 70


>gi|254502300|ref|ZP_05114451.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222438371|gb|EEE45050.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 100

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             + R +RK   LT  E+  R G +  W+S++E G S ++ +++  +A   D P   L
Sbjct: 4  LGADLRALRKTKGLTLTELAERLGKSVGWLSQIERGISKLSSEDIDRMAGVFDVPPSLL 62


>gi|218185799|gb|EEC68226.1| hypothetical protein OsI_36225 [Oryza sativa Indica Group]
          Length = 200

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R+ RK+ KL+  E+  R   ++  + E+E G +  +I  +  LA  L   +  ++
Sbjct: 22 VANRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81


>gi|210614628|ref|ZP_03290239.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787]
 gi|210150618|gb|EEA81627.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787]
          Length = 118

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  LTQ+E+ + +  +   I+ +E G+   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPLSLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|124486416|ref|YP_001031032.1| adenine deaminase [Methanocorpusculum labreanum Z]
 gi|124363957|gb|ABN07765.1| helix-turn-helix domain protein [Methanocorpusculum labreanum Z]
          Length = 347

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  RK + LTQ+E+       +  IS+ E GK + +   +I L+  L   +   
Sbjct: 1  MFGERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYF 60

Query: 81 LK 82
           +
Sbjct: 61 FR 62


>gi|38234037|ref|NP_939804.1| putative DNA-binding protein [Corynebacterium diphtheriae NCTC
          13129]
 gi|38200299|emb|CAE49984.1| Putative DNA-binding protein [Corynebacterium diphtheriae]
          Length = 109

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R  R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 22 PEPLLREALGAALRAFRADKGITLRELAETSRVSPGYLSELERGRKEVSSELLASVCHAL 81

Query: 74 DTPLWKLL 81
           T +  +L
Sbjct: 82 GTSVSDVL 89


>gi|91978515|ref|YP_571174.1| hypothetical protein RPD_4054 [Rhodopseudomonas palustris BisB5]
 gi|91684971|gb|ABE41273.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisB5]
          Length = 480

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q +I    G + S+I+ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|325104005|ref|YP_004273659.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145]
 gi|324972853|gb|ADY51837.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145]
          Length = 75

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 IR+   +TQ++++  TG     I  +E  ++ ++I ++ ++A  L   + +LL
Sbjct: 14 VGKRLMEIREAKNITQEKLQELTGLDIRQIGRIERAETNVSISSIKLIADCLKISVSELL 73


>gi|288800505|ref|ZP_06405963.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332718|gb|EFC71198.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 299 str. F0039]
          Length = 102

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RK+AK+TQ E+  R G  +S+IS++E G    ++     L + L 
Sbjct: 40 AQILLQARKDAKVTQSELAQRVGTTKSYISKIENGVIEPSVGLFFRLINALG 91


>gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          viridochromogenes DSM 40736]
 gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          viridochromogenes DSM 40736]
          Length = 509

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|163848207|ref|YP_001636251.1| helix-turn-helix domain-containing protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222526115|ref|YP_002570586.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl]
 gi|163669496|gb|ABY35862.1| helix-turn-helix domain protein [Chloroflexus aurantiacus
          J-10-fl]
 gi|222449994|gb|ACM54260.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl]
          Length = 181

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +R+E  LT +E+   +G   S++S LE  K  I++ N+  LA      +  
Sbjct: 1  MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60

Query: 80 LLK 82
            +
Sbjct: 61 FFE 63


>gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis
          subsp. lactis KF147]
 gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis
          Il1403]
 gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis
          subsp. lactis KF147]
          Length = 107

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RK   L+Q+E+  +   ++  IS+ ETGKS    D +I+L+   D  L  LLK
Sbjct: 7  IKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDTLLK 63


>gi|15613507|ref|NP_241810.1| transcriptional regulator [Bacillus halodurans C-125]
 gi|10173559|dbj|BAB04663.1| transcriptional regulator [Bacillus halodurans C-125]
          Length = 107

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R++RK  K T  E+  R+G   +++++LE G+  ++++ +  +   L+   W L+ 
Sbjct: 8  GSQIRSLRKGNKWTLSELSKRSGVTLNYLAQLERGEVNVSVNKLDKVLQALNVE-WSLVV 66

Query: 83 P 83
          P
Sbjct: 67 P 67


>gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7]
 gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus
          tokodaii str. 7]
          Length = 515

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                IR++  ++  ++    G ++S + E+E GK + NI  +  +A+ L     +L+ 
Sbjct: 6  GKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELIT 65


>gi|330847157|gb|AEC46565.1| hypothetical transcriptional repressor [Xanthomonas alfalfae
          subsp. citrumelonis]
          Length = 116

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    +  R    L+QKE+  R G     A   I++ E GK    ++    LA  L  P
Sbjct: 19 FARRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPKLETAERLAQALGIP 77


>gi|325662674|ref|ZP_08151271.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331086418|ref|ZP_08335498.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325471013|gb|EGC74240.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330406184|gb|EGG85707.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 65

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q ++   T   +  I  +E G    ++   I +   L   L  L 
Sbjct: 5  KLKIARMEQGLSQVQLAEMTDVTRQTIGMIEAGDFNPSLKLCIRICKALGKTLDDLF 61


>gi|282878487|ref|ZP_06287271.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella buccalis ATCC 35310]
 gi|281299393|gb|EFA91778.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella buccalis ATCC 35310]
          Length = 101

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            RKEAK+TQ E+  + G  +S+IS++E G     +     L ++L 
Sbjct: 45 QARKEAKMTQTELAEKAGTTKSYISKIENGLIEPGVGLFFRLVNSLG 91


>gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479]
 gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479]
          Length = 260

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     N+RKE  L+Q+ +  +    +  IS+ E        + ++ L+     P+  LL
Sbjct: 3  FGEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDFLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|257437719|ref|ZP_05613474.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257200026|gb|EEU98310.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 95

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RK + LTQKE+  RTG AQ+ IS+LE G +  ++  +  LA  +   +     P
Sbjct: 37 ARKVSGLTQKELSERTGIAQADISKLENGNANPSLRTLQRLAAGMGMQVKIEFIP 91


>gi|227811902|ref|YP_002811912.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2]
 gi|227011044|gb|ACP07255.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2]
          Length = 207

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T +E   RTG A+S +S++E  + +     M   AH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKFAHGLQIEM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|149374604|ref|ZP_01892378.1| transcriptional regulator, XRE family protein [Marinobacter
          algicola DG893]
 gi|149361307|gb|EDM49757.1| transcriptional regulator, XRE family protein [Marinobacter
          algicola DG893]
          Length = 267

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   F +  R  R+   ++Q ++      +   +S +ETG+S    D ++ LA TL+ PL
Sbjct: 13 EHSAFGHKLRYWRRHRGMSQLDLALEADISPRHLSFIETGRSRPKRDLVLKLAVTLEVPL 72

Query: 78 WK 79
           +
Sbjct: 73 RE 74


>gi|17230004|ref|NP_486552.1| transcriptional regulator [Nostoc sp. PCC 7120]
 gi|423971|pir||A47082 probable transcription regulator PatB - Anabaena sp
 gi|142067|gb|AAB59013.1| PatB [Nostoc sp. PCC 7120]
 gi|17131604|dbj|BAB74211.1| transcriptional regulator [Nostoc sp. PCC 7120]
          Length = 529

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +++R        +     +        RK   L+Q+E+   TG +QSWI ++E G+    
Sbjct: 456 KKQRRTAKSRQKLKTAGDLVGEQILQARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAK 515

Query: 63  IDNMIILAHTLDT 75
           +++  +L   L  
Sbjct: 516 LEDQTLLRKVLHI 528


>gi|154248374|ref|YP_001419332.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154162459|gb|ABS69675.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus
          Py2]
          Length = 203

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  ++  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 21 LGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERNETNPTLATVWRLSQALDMTVERVL 80


>gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
 gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
          Length = 120

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +RK+ + +Q+++  + G  +  IS+ E+ +   +I+N+I L+   +     LLK
Sbjct: 5  ERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDYLLK 63


>gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil
          5]
          Length = 167

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|218282728|ref|ZP_03488925.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989]
 gi|218216373|gb|EEC89911.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989]
          Length = 177

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LT +E+ NR+   + ++S+LE   ++ NI  +  +   L T L    +
Sbjct: 4  GKKLKELRTQNGLTLEELANRSELTKGFLSQLERDLTSPNISALENILEALGTNLADFFQ 63


>gi|146341478|ref|YP_001206526.1| transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194284|emb|CAL78306.1| putative transcriptional regulator, with HTH domain (N-terminal)
          and a RmlC-like cupin domain (C-terminal)
          [Bradyrhizobium sp. ORS278]
          Length = 221

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   LT K++  +TG A S +S++E G  ++  D ++ L   L   + +L 
Sbjct: 17 LGQCLKAARQARGLTLKQVAEKTGMALSTLSKVENGLMSLTYDKLLQLTSGLQMDIAELF 76

Query: 82 KP 83
           P
Sbjct: 77 SP 78


>gi|134101979|ref|YP_001107640.1| hypothetical protein SACE_5523 [Saccharopolyspora erythraea NRRL
            2338]
 gi|133914602|emb|CAM04715.1| hypothetical protein SACE_5523 [Saccharopolyspora erythraea NRRL
            2338]
          Length = 5856

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 19   RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R +     + +R+ AKL+Q+     +G +++ IS+ ETG+   +++ +  L +  D  
Sbjct: 1762 RGVLGARLKLLRERAKLSQRGAAAVSGVSRTRISDFETGRDVPSVEKLGALLNVYDVS 1819



 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 15   ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               ER+      + +R  A L+Q++    +G     IS  E G+   +   +  L    D
Sbjct: 1591 SATERISLGARLKTLRDAAGLSQRDAATLSGVDHREISHYELGERVPSEQRLGALLDAYD 1650

Query: 75   TPLWK 79
             P+ +
Sbjct: 1651 VPVAE 1655



 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 13   DAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            DA+   R+  +     + +R+ AKL+Q      +G +++ IS  ETG++  +++ +  L 
Sbjct: 1271 DAVDPTRLSGVLGARLKLLRERAKLSQCGAAAVSGVSRTRISAGETGRAVPSVEQLGALL 1330

Query: 71   HTLDTP 76
            +  D  
Sbjct: 1331 NVYDVS 1336



 Score = 40.8 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 22   FVNNFRNIRKEAKLTQKEIRNRT---GFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
              +    +R+ A L+Q+    +    G  Q+ IS  E+G++  +++ +  L +     + 
Sbjct: 1678 LGSKLTMLREAAGLSQRAAATQMRIDGINQASISAFESGRAVPSVERLGALLNVYRVSIE 1737

Query: 79   K 79
            +
Sbjct: 1738 E 1738



 Score = 38.1 bits (87), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 18   ERMIFVNNFRNIRKEAKLTQKEIR-------NRTGFAQSWISELETGKSTINIDNMIILA 70
            +R++     + +RK  KL Q++I           G AQS +S +E+G+   N   ++I+ 
Sbjct: 1108 QRVVLGAALKRLRKAKKLAQRDIATWLKEGGEDRG-AQSTVSLIESGRYPPNRRELLIML 1166

Query: 71   HTLDTPLWK 79
            +       +
Sbjct: 1167 NAYGVSREE 1175


>gi|85707180|ref|ZP_01038267.1| transcriptional regulator, putative [Roseovarius sp. 217]
 gi|85668339|gb|EAQ23213.1| transcriptional regulator, putative [Roseovarius sp. 217]
          Length = 436

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 29/67 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +R++     R  R    + Q ++  + G + S+++ +E     I    ++ LA  L  
Sbjct: 1  MPDRLMIGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEALKV 60

Query: 76 PLWKLLK 82
             +L +
Sbjct: 61 EPSQLTQ 67


>gi|170736981|ref|YP_001778241.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169819169|gb|ACA93751.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 180

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60


>gi|300871532|ref|YP_003786405.1| MerR family transcriptional regulator [Brachyspira pilosicoli
          95/1000]
 gi|300689233|gb|ADK31904.1| transcriptional regulator, MerR family [Brachyspira pilosicoli
          95/1000]
          Length = 121

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +RK  K+T   +    G +  ++  +E G   I++  +  +A  L+T    LL
Sbjct: 10 LGYNIRLLRKSKKMTIDALAEHAGVSSKYLQGIEVGNRNISVKRLNKIARALETTPESLL 69

Query: 82 K 82
           
Sbjct: 70 T 70


>gi|299146496|ref|ZP_07039564.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_23]
 gi|298516987|gb|EFI40868.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_23]
          Length = 101

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK+AK+TQ E+  R G  +S+IS +E+G++   +     + + L 
Sbjct: 41 GQIIEDARKKAKITQAELARRIGSDRSYISRVESGQTEPKVSTFYRIMNALG 92


>gi|296876650|ref|ZP_06900698.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|312867662|ref|ZP_07727868.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|322389318|ref|ZP_08062877.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
 gi|296432152|gb|EFH17951.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|311096725|gb|EFQ54963.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|321143982|gb|EFX39401.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
          Length = 66

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    L+Q  +    G ++  I+ +E GK   ++D  I LA  L T L  L 
Sbjct: 2  NRVKEYRVNLGLSQLALAKSIGVSRQTINMIENGKYNPSLDLCINLAKELGTDLNSLF 59


>gi|227508341|ref|ZP_03938390.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
 gi|227192159|gb|EEI72226.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
          Length = 237

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  RKE  LTQK++  +   ++  IS  E G++  +   MI L+   +  +  LLK
Sbjct: 28 KKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIFEIKIDDLLK 86


>gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 182

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R +A ++   +    G A+S +S+LE G+   +++ +  +A  L+ P   L
Sbjct: 6  LIAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGNPSVETLWAIASALNVPFSFL 65

Query: 81 LK 82
           +
Sbjct: 66 FE 67


>gi|116491838|ref|YP_803573.1| XRE family transcriptional regulator [Pediococcus pentosaceus
          ATCC 25745]
 gi|116101988|gb|ABJ67131.1| Transcriptional regulator, xre family [Pediococcus pentosaceus
          ATCC 25745]
          Length = 190

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + IR+   LTQ+E+  +    +  IS  E GK+  NI  +  LA   +  L +
Sbjct: 1  MSIGTTLQKIRQARDLTQQEVATQMYVTRQTISRWEQGKTMPNIYALKDLAQLYNVSLDQ 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
 gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876]
          Length = 267

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +RK+  L+Q+ +  +    +  IS+ E G+S  ++D +  L+         
Sbjct: 1  MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFSVSSDY 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|258654776|ref|YP_003203932.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258558001|gb|ACV80943.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 197

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +  LT   +   TG ++S +S LETG+    ++ ++ L+H    PL  L+
Sbjct: 19 VGPRLKGLRTQRGLTLTVVSASTGISKSTLSRLETGQRRPTLELLLALSHAYRVPLDDLV 78


>gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 199

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +  +T   +   TG ++S +S LE G+   +++ ++ +A     PL +L+
Sbjct: 15 VGPRLKRLRTQRGVTLTALAEATGISKSTLSRLEGGQRRPSLELLLPIAQAHQVPLDELV 74


>gi|261344638|ref|ZP_05972282.1| DNA-binding protein [Providencia rustigianii DSM 4541]
 gi|282567554|gb|EFB73089.1| DNA-binding protein [Providencia rustigianii DSM 4541]
          Length = 117

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R IRKE  ++  E+  +   +Q  +S  E G +  +ID +  +   L+ P  +L+K
Sbjct: 31 IRKIRKENGISACELAKKVNISQQQMSRYERGINKFSIDMLFDITVALNIPFERLIK 87


>gi|331650420|ref|ZP_08351492.1| Helix-turn-helix-containing protein [Escherichia coli M605]
 gi|331040814|gb|EGI12972.1| Helix-turn-helix-containing protein [Escherichia coli M605]
          Length = 265

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  NN + +R +  +TQ+E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 1  MLQNNIKQLRTQLSITQRELAFMVGTSQQQIQRIETGKVAAKLGLAQAICNALDKPL 57


>gi|296332927|ref|ZP_06875387.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305673272|ref|YP_003864944.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str.
          W23]
 gi|296150207|gb|EFG91096.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC
          6633]
 gi|305411516|gb|ADM36635.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str.
          W23]
          Length = 185

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N   +RK   LT  ++   TG +++ + ++E GKST  +  +  +A+ L       
Sbjct: 7  IIAMNLVKLRKNRNLTLDQVSELTGVSKAMLGQIEKGKSTPTVTTLWKIANGLQVSFSVF 66

Query: 81 LK 82
          LK
Sbjct: 67 LK 68


>gi|288920763|ref|ZP_06415063.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288347839|gb|EFC82116.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 77

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R  + L+Q+E+  R G  Q+++ ELE GK +I +D +          L  
Sbjct: 11 ESLGRILRQARLLSGLSQRELARRLGTTQNYVWELEAGKRSIMMDRLFAAMRATGMELTA 70

Query: 80 LLK 82
           ++
Sbjct: 71 TVR 73


>gi|229172431|ref|ZP_04299990.1| Transcriptional regulator, Xre [Bacillus cereus MM3]
 gi|228610902|gb|EEK68165.1| Transcriptional regulator, Xre [Bacillus cereus MM3]
          Length = 404

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L   +  LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIADKLGCEISFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|210634970|ref|ZP_03298392.1| hypothetical protein COLSTE_02321 [Collinsella stercoris DSM
          13279]
 gi|210158540|gb|EEA89511.1| hypothetical protein COLSTE_02321 [Collinsella stercoris DSM
          13279]
          Length = 71

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+    N +  R EA  + ++     G + +++ E+ETG+ ++  D + ++A +L   + 
Sbjct: 7  RLRLGRNIKARRIEAGHSMRQFAAMVGTSHNYLWEIETGRVSVGFDILCVIADSLGVRVR 66

Query: 79 KLL 81
           L+
Sbjct: 67 DLV 69


>gi|153814878|ref|ZP_01967546.1| hypothetical protein RUMTOR_01093 [Ruminococcus torques ATCC
          27756]
 gi|317500391|ref|ZP_07958615.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089602|ref|ZP_08338501.1| hypothetical protein HMPREF1025_02084 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145847909|gb|EDK24827.1| hypothetical protein RUMTOR_01093 [Ruminococcus torques ATCC
          27756]
 gi|316898146|gb|EFV20193.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404970|gb|EGG84508.1| hypothetical protein HMPREF1025_02084 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  NN +  R + +++Q+E+    G +++ IS +ETG+        +I+   LD    +
Sbjct: 5  LVLKNNLKEARAKKQISQRELAEMVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEE 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|78222436|ref|YP_384183.1| XRE family transcriptional regulator [Geobacter metallireducens
          GS-15]
 gi|78193691|gb|ABB31458.1| transcriptional regulator, XRE family [Geobacter metallireducens
          GS-15]
          Length = 173

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              + +RK+ +LTQK++  R   G   ++I ++E G+   ++  ++ L+  L  P+   
Sbjct: 36 GRELKRLRKDRELTQKDLAARVDGGLDYTYIGKIERGEQLPSLKMLMGLSAALGVPVSHF 95

Query: 81 LK 82
           +
Sbjct: 96 FQ 97


>gi|121603936|ref|YP_981265.1| XRE family transcriptional regulator [Polaromonas
          naphthalenivorans CJ2]
 gi|120592905|gb|ABM36344.1| transcriptional regulator, XRE family [Polaromonas
          naphthalenivorans CJ2]
          Length = 223

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ RK   L  +++    G + S +S++E G  +I++  +  L++ L  PL  L+
Sbjct: 38 LGEQVRHRRKALGLPLQQVARGCGVSVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 97

Query: 82 K 82
          +
Sbjct: 98 R 98


>gi|260910500|ref|ZP_05917168.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
          F0295]
 gi|260635342|gb|EEX53364.1| transcriptional regulator [Prevotella sp. oral taxon 472 str.
          F0295]
          Length = 102

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  I     +  RK++ LTQ ++  + G  +S+IS +E G + + +  +  +   L  
Sbjct: 37 VDAFILGERLKEERKKSGLTQAQLAAKIGTKKSYISRIENGHADVQLSTLFRIFAGLGK 95


>gi|228988770|ref|ZP_04148846.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228770950|gb|EEM19440.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 63

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            +  R     TQ ++  ++G  Q  IS +E G     +I ++  +A+ L   L +LL
Sbjct: 6  KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIANALGISLEELL 63


>gi|224543501|ref|ZP_03684040.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523628|gb|EEF92733.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM
           15897]
          Length = 126

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                + +  R   K+TQ+ +    G ++  +S+ E G S  N  N+I L+         
Sbjct: 54  KSLGESLKENRLRCKMTQEFVAETLGVSRQAVSKWENGTSDPNTTNLIALSRLYKVTPED 113

Query: 80  LLK 82
           LLK
Sbjct: 114 LLK 116


>gi|167578777|ref|ZP_02371651.1| gp68 [Burkholderia thailandensis TXDOH]
          Length = 131

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++P
Sbjct: 66  VRAWRNHLRMTQDALATAAGISKPYLSQIETRQRVGTTDVLSKIASALSVPVDDLIEP 123


>gi|167622459|ref|YP_001672753.1| XRE family transcriptional regulator [Shewanella halifaxensis
          HAW-EB4]
 gi|167352481|gb|ABZ75094.1| transcriptional regulator, XRE family [Shewanella halifaxensis
          HAW-EB4]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R+ RK   ++Q ++       +S+   +E G+  I ++    LA  L+  + +LL
Sbjct: 8  FGTKLRDKRKALGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLECDVRELL 67


>gi|126699926|ref|YP_001088823.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|254975889|ref|ZP_05272361.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255093277|ref|ZP_05322755.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255315019|ref|ZP_05356602.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517694|ref|ZP_05385370.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650804|ref|ZP_05397706.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|255656283|ref|ZP_05401692.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|260683886|ref|YP_003215171.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260687546|ref|YP_003218680.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296450276|ref|ZP_06892037.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296878691|ref|ZP_06902696.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|306520704|ref|ZP_07407051.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|115251363|emb|CAJ69195.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|260210049|emb|CBA64125.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260213563|emb|CBE05326.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|296261039|gb|EFH07873.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296430498|gb|EFH16340.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 66

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  R+  +LTQ+++  + G  +  I  LE GK   ++   I ++  +DTP+ +L 
Sbjct: 4  FICNLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63


>gi|83716369|ref|YP_438206.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|167579250|ref|ZP_02372124.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
 gi|167614637|ref|ZP_02383272.1| DNA-binding protein [Burkholderia thailandensis Bt4]
 gi|257141225|ref|ZP_05589487.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83650194|gb|ABC34258.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 202

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84


>gi|88855996|ref|ZP_01130658.1| Transcription regulator [marine actinobacterium PHSC20C1]
 gi|88814863|gb|EAR24723.1| Transcription regulator [marine actinobacterium PHSC20C1]
          Length = 193

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P        E +      R+ RK    T +++    G  + ++S LE  +++ ++  ++ 
Sbjct: 3  PLSPSPS-AEALAIGARIRSARKAQGFTLEQVAVSAGLTKGFLSRLERDETSPSVATLVQ 61

Query: 69 LAHTLDTPLWKLL 81
          L   L   +  L 
Sbjct: 62 LCQVLSLEIGSLF 74


>gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 490

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80
           +  R  R+   LTQ+++ +  GF QS++S++E+G+  I +I  +  +A  L      +
Sbjct: 21 GSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGLSPEDV 79


>gi|256391234|ref|YP_003112798.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256357460|gb|ACU70957.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 154

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 2   PRRKRDEP--HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           P +  ++P    +      R +  +  R +R+E + +  E   R G +  ++SE+E G  
Sbjct: 31  PSQPPNQPPKQSATPEPLWREVLGDQLRELRREHRESLAETAGRAGISPQYLSEVERGLK 90

Query: 60  TINIDNMIILAHTLDTPL 77
             + + +  +A  L T L
Sbjct: 91  EPSSEMIAAVAGALGTTL 108


>gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 97

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              + +R +  +TQKE+  + G  Q+ +S +ETG    + +++  +A+ L 
Sbjct: 4  GKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALG 55


>gi|255035006|ref|YP_003085627.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254947762|gb|ACT92462.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 394

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN + +R+   LTQ++   +    +S +   E  ++  N+ N+  +A      +  L
Sbjct: 3  IVSNNIKYLRRLNGLTQEQFARKIAIKRSLLGAYEEARANPNLTNLKNMAAAFGVSVDNL 62

Query: 81 LK 82
          LK
Sbjct: 63 LK 64


>gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
          15053]
 gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM
          15053]
          Length = 377

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + IRKE  ++Q+ +      ++ ++S +E   +T +I   + +   L   + K+ 
Sbjct: 2  NRVKEIRKERGMSQETLARYIEISRKYLSMIECQNATPSISIAMRIGGALGVSVDKIF 59


>gi|215429297|ref|ZP_03427216.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289752506|ref|ZP_06511884.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289693093|gb|EFD60522.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
          Length = 140

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K      + A      I  +  R+ R+ A ++ +++  R+G +  ++S++E G    + D
Sbjct: 6  KLAAKVSTKASDVASDI-GSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD 64

Query: 65 NMIILAHTLDTPLWKL 80
           +  +A  L      L
Sbjct: 65 VLSQIAKALRVSAEVL 80


>gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 203

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+                     + +R E KLT  ++    G ++S +SE+E  K+   I
Sbjct: 8  RRTPAAAAPQPSGVTPPRVGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTI 67

Query: 64 DNMIILAHTLDTPLWKLL 81
               L + L   L +L 
Sbjct: 68 AVAWRLTNALGITLDELF 85


>gi|103487671|ref|YP_617232.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98977748|gb|ABF53899.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
           RB2256]
          Length = 222

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           D P     ++     F +  + +R   +LTQ ++  + G ++  IS  E  K+      M
Sbjct: 112 DVPPPGAGVVSASETFGSRLQRLRVARELTQGQLAAQLGVSEPSISAWELDKARPKAGRM 171

Query: 67  IILAHTLDTPLWKLL 81
             L+  L   + +LL
Sbjct: 172 EALSEALGVEISELL 186


>gi|15963764|ref|NP_384117.1| hypothetical protein SMc02783 [Sinorhizobium meliloti 1021]
 gi|307302567|ref|ZP_07582324.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|307316102|ref|ZP_07595546.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|15072939|emb|CAC41398.1| Putative HTH-type transcriptional regulator [Sinorhizobium
          meliloti 1021]
 gi|306897942|gb|EFN28684.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306903237|gb|EFN33827.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 125

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R +R+   ++QKE+    G + +++S LE GK    + D +  +A   + 
Sbjct: 4  FGEAVRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNV 58


>gi|296157068|ref|ZP_06839904.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295892404|gb|EFG72186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 99

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 23/56 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F    R +R    + Q+ + +  G  +S + ++E G+    +  +  +A  L    
Sbjct: 26 FGTAVRELRTADGIAQEALAHMAGIERSHMGKIERGQHMPTLALIFKIASALGKSP 81


>gi|294814036|ref|ZP_06772679.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326635|gb|EFG08278.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 30 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 88


>gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785]
 gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
          johnsonii FI9785]
          Length = 161

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  LTQ+E+  +    +  IS  E  ++  + + +I++A T    L +L+
Sbjct: 3  FNEQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAKTFGVSLDELI 62


>gi|254785721|ref|YP_003073150.1| DNA-binding protein [Teredinibacter turnerae T7901]
 gi|237684567|gb|ACR11831.1| DNA-binding protein [Teredinibacter turnerae T7901]
          Length = 200

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 8  EPHLSDAILRERMIF------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          E     A+L E+             + +RK+  L+Q+E+  R     S +S +E GK + 
Sbjct: 2  EEQSPQAVLSEQTAVSANNRLGERLQAVRKQHGLSQRELARRAEVTNSTLSMIEQGKVSP 61

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          ++ ++  +   +   L +  
Sbjct: 62 SVASLEKVLSAIPMTLQEFF 81


>gi|223982789|ref|ZP_03633015.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM
          12042]
 gi|223965236|gb|EEF69522.1| hypothetical protein HOLDEFILI_00289 [Holdemania filiformis DSM
          12042]
          Length = 87

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +RK  KLTQ+++    G +   +S  E  ++ +    +  +A TLD  L +L
Sbjct: 8  LLGRRIRILRKYRKLTQEQLAEVVGLSIQHLSNAENARTKLGFPKIKSIADTLDVSLDEL 67


>gi|149204098|ref|ZP_01881066.1| DNA-binding protein [Roseovarius sp. TM1035]
 gi|149142540|gb|EDM30585.1| DNA-binding protein [Roseovarius sp. TM1035]
          Length = 94

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F       R++A LTQ+E+  R   +  +IS LETG+   ++  +  L+  L   +  L+
Sbjct: 16 FAVTLYEERQKAGLTQEELAERADVSARFISFLETGRRQPSLSTLHALSKGLRISMQDLV 75


>gi|73748675|ref|YP_307914.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|147669434|ref|YP_001214252.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|289432701|ref|YP_003462574.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660391|emb|CAI82998.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|146270382|gb|ABQ17374.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
 gi|288946421|gb|ADC74118.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 214

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
          M      R  RK    T + +  R+G +  +I +LE G+  +I +     L++       
Sbjct: 2  MSIGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQSITLATANKLSNAFGIEPA 61

Query: 79 KLL 81
          KL+
Sbjct: 62 KLI 64


>gi|327438377|dbj|BAK14742.1| predicted transcriptional regulator [Solibacillus silvestris
          StLB046]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q E+  + G  +  I  +E GK    +   I +  TL+  L +L 
Sbjct: 5  RLKMARIEHDLSQDELAKKVGVTRQTIGLIELGKYNPTLSVCIAICRTLNRTLDELF 61


>gi|294498960|ref|YP_003562660.1| putative transcriptional regulator SinR [Bacillus megaterium QM
          B1551]
 gi|295704284|ref|YP_003597359.1| transcription regulator SinR [Bacillus megaterium DSM 319]
 gi|294348897|gb|ADE69226.1| probable transcription regulator sinR [Bacillus megaterium QM
          B1551]
 gi|294801943|gb|ADF39009.1| probable transcription regulator sinR [Bacillus megaterium DSM
          319]
          Length = 111

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
          M      R++R +  ++  E+ NR G A+S+IS +E G +   +I  +  ++ +L+  + 
Sbjct: 1  MTIGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQLNPSIQFLNKISTSLNVSID 60

Query: 79 KLL 81
          +L+
Sbjct: 61 RLI 63


>gi|300767755|ref|ZP_07077665.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|300494740|gb|EFK29898.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
          Length = 250

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     +  R +  LTQ ++ ++       +S+ E GK+  +IDN++ L+   +  L +
Sbjct: 1  MLLAALLKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM
          15436]
 gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM
          15436]
          Length = 354

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +++R    LTQ+ +    G ++  IS+ E+ ++   +D ++ +       L +
Sbjct: 25 MSFRENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRAYPEMDKLLTICDLFGCTLDE 84

Query: 80 LLK 82
          L+ 
Sbjct: 85 LVT 87


>gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
 gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
 gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
 gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC
          29799]
 gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC
          29799]
          Length = 307

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R +A L+Q+ +  + G ++  IS+ E   +   +D +I L+   +  L  
Sbjct: 1  MTLGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHD 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLQ 63


>gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1]
 gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1]
          Length = 192

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 31/52 (59%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N  +++RKE  LT ++I +R G  +  IS++E G++  ++  +I +   L+ 
Sbjct: 11 NKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTIPSLLVLIEIIQALEV 62


>gi|28377509|ref|NP_784401.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1]
 gi|308181218|ref|YP_003925346.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|28270341|emb|CAD63242.1| prophage Lp1 protein 12 [Lactobacillus plantarum WCFS1]
 gi|308046709|gb|ADN99252.1| prophage Lp1 protein 12 [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 66

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M +    R +R++  L+Q  + +++G  Q+ IS +E+G + +  +    LA  L     +
Sbjct: 1  MTYTLRIRELRQKLGLSQSALADKSGVPQTTISAIESG-TNLTYETAKKLARALGVSTDE 59

Query: 80 L 80
          L
Sbjct: 60 L 60


>gi|28377772|ref|NP_784664.1| hypothetical protein lp_0949 [Lactobacillus plantarum WCFS1]
 gi|254555954|ref|YP_003062371.1| hypothetical protein JDM1_0787 [Lactobacillus plantarum JDM1]
 gi|308179946|ref|YP_003924074.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp.
          plantarum ST-III]
 gi|28270605|emb|CAD63511.1| unknown [Lactobacillus plantarum WCFS1]
 gi|254044881|gb|ACT61674.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
 gi|308045437|gb|ADN97980.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp.
          plantarum ST-III]
          Length = 250

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     +  R +  LTQ ++ ++       +S+ E GK+  +IDN++ L+   +  L +
Sbjct: 1  MLLAALLKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|255262941|ref|ZP_05342283.1| DNA-binding protein [Thalassiobium sp. R2A62]
 gi|255105276|gb|EET47950.1| DNA-binding protein [Thalassiobium sp. R2A62]
          Length = 209

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  R+   +T  E+   TG +   +S++E G ++ ++  +  LA  L  P+
Sbjct: 26 GREVKGFRRRQNMTVAELSAMTGLSIGMLSKIENGNTSPSLTTLQTLADALTVPI 80


>gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 118

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I       +RKE KL Q+E+    G ++  IS+ E G    + +N+  LA     P+  L
Sbjct: 3  IIGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVDYL 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|170783094|ref|YP_001711428.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169157664|emb|CAQ02865.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 153

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+EA L+Q+E+   TG  Q  I+  E+G+   + + ++ L   L  P    +
Sbjct: 6  VGEELRRLRREAALSQRELAAVTGVPQPNIAAYESGRRQPSPETLVRLGAALRAPSLDRV 65

Query: 82 K 82
          +
Sbjct: 66 R 66


>gi|168207127|ref|ZP_02633132.1| transcriptional regulator, XRE family [Clostridium perfringens E
          str. JGS1987]
 gi|170661532|gb|EDT14215.1| transcriptional regulator, XRE family [Clostridium perfringens E
          str. JGS1987]
          Length = 134

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F NN + +RK   L+Q E+    G ++S +S  E+G+S   ++ +I ++   +  L  L+
Sbjct: 10 FPNNLKTLRKLNLLSQSELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYLI 69


>gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753]
 gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753]
          Length = 152

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N+  + RK   L+Q+++  + G ++  IS+ ETG++  +I     LA      L +L+
Sbjct: 3  LGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQCKRLAVLYQMSLDELI 62


>gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 182

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R +R    L+Q+E+  R G   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSNPSVGALKRILDGIPIGLAEFF 64


>gi|85716772|ref|ZP_01047739.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A]
 gi|85696379|gb|EAQ34270.1| hypothetical protein NB311A_10318 [Nitrobacter sp. Nb-311A]
          Length = 199

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             R  R++  L+Q+++  R G  QS IS++E+G + + + +++ LA  LD  L 
Sbjct: 15 QTLRAAREQTGLSQRDLSARIGVPQSHISKIESGGTDLRLSSLVELARALDYELV 69


>gi|115522503|ref|YP_779414.1| anaerobic benzoate catabolism transcriptional regulator
          [Rhodopseudomonas palustris BisA53]
 gi|115516450|gb|ABJ04434.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Rhodopseudomonas palustris BisA53]
          Length = 305

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R    +++K +   +G ++ +I++LE+GK  ++I  +  ++  L T    
Sbjct: 13 EQLGQRVRTMRGLRGMSRKVLAKTSGISERYIAQLESGKGNVSIVLLRRVSQALGTQPED 72

Query: 80 LL 81
          L+
Sbjct: 73 LI 74


>gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis
           SK330]
          Length = 194

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           ++F    + +RK A ++QK +  +   +Q  I+  E G+     + +I  A   D  +  
Sbjct: 79  LMFPERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQRNPKREKLIETADFFDVSVDY 138

Query: 80  LL 81
           LL
Sbjct: 139 LL 140


>gi|325918054|ref|ZP_08180215.1| transcriptional regulator, XRE family [Xanthomonas vesicatoria
          ATCC 35937]
 gi|325535751|gb|EGD07586.1| transcriptional regulator, XRE family [Xanthomonas vesicatoria
          ATCC 35937]
          Length = 116

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    +  R    L+QKE+  R G     A   I++ E GK    ++    LA  L  P
Sbjct: 19 FARRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPKLETAERLAQALGIP 77


>gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338]
 gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338]
          Length = 168

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R+   LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70

Query: 81 L 81
          +
Sbjct: 71 V 71


>gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3]
 gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3]
          Length = 181

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +R + KLTQ E+    G  ++ ++ +E   S  +I  ++ +A  L   +  L+ 
Sbjct: 9  IKRLRAQHKLTQIELAEMAGIPRATLANMEGANSNPSISVVMKVAQALGVTVDDLIT 65


>gi|329298836|ref|ZP_08256172.1| DNA-binding transcriptional repressor PuuR [Plautia stali
          symbiont]
          Length = 186

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+E  L+Q+ +   +G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
 gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|291549648|emb|CBL25910.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 118

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  LTQ+E+ + +  +   I+ +E G+   +   +  LA  L   L  L+
Sbjct: 9  LGQKMRESRKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVLPISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|288551655|ref|YP_003422743.1| hypothetical protein pXY3_p6 [Lactobacillus plantarum]
 gi|284930108|gb|ADC30142.1| conserved domain protein [Lactobacillus plantarum]
          Length = 85

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R   KLTQ E+ + TG  +  I  LE  +   +++    +A  L+TP+  L 
Sbjct: 18 FTCNVKQYRVAKKLTQAELSDFTGVRRETIGRLENAQYVPSLELGFKIAWVLNTPITDLF 77

Query: 82 K 82
          K
Sbjct: 78 K 78


>gi|261414746|ref|YP_003248429.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|261371202|gb|ACX73947.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|302328044|gb|ADL27245.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
          Length = 121

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          IR++ + TQ+ +   +G ++ +IS++E GK   ++D +  LA  L T +  L+
Sbjct: 19 IRQQRRHTQQSLSLESGISRQYISQMECGKRIPSLDTLSQLAIALKTSMGSLM 71


>gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
 gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
          Length = 189

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+E  ++   +    G  ++ +S LE G     ++ +  +   L  PL
Sbjct: 22 VGARVRALREERGMSLSTLARLAGVGKATLSGLENGTRNPTLETLYAVTAQLGVPL 77


>gi|228911093|ref|ZP_04074900.1| Transcription regulator, probable-related protein [Bacillus
          thuringiensis IBL 200]
 gi|228848597|gb|EEM93444.1| Transcription regulator, probable-related protein [Bacillus
          thuringiensis IBL 200]
          Length = 68

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +++NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L
Sbjct: 4  LYLNNVKKYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63

Query: 81 L 81
           
Sbjct: 64 F 64


>gi|218247603|ref|YP_002372974.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218168081|gb|ACK66818.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 173

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E HL +     R+      + +RK+  LTQK++  + G  QSW+S+LE+  +    ++++
Sbjct: 24 EMHLIEKQEVFRISLTQAMKQLRKKVGLTQKQLAEKLGVTQSWVSKLESANNDHTFESVL 83

Query: 68 ILAHTL 73
             + L
Sbjct: 84 AYLNGL 89


>gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae
          D39]
 gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP6-BS73]
 gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          CDC0288-04]
 gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585]
 gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6]
 gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae
          D39]
 gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP6-BS73]
 gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae]
 gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          CDC0288-04]
 gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae]
 gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585]
 gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6]
 gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|83717317|ref|YP_440206.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83651142|gb|ABC35206.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  RKE  ++Q+ + +     +S + ++E G+  + I N++ +A  L     +
Sbjct: 1  MSLGAAIRARRKELVMSQEALADFAEIDRSHMGKIERGERNVTIMNIVRIARALQLLPSE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum
          ATCC 13032]
 gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium
          glutamicum ATCC 13032]
          Length = 474

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 59


>gi|77412886|ref|ZP_00789090.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77161026|gb|EAO72133.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 117

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +RK+  L+QKE+  + G     IS +E  K      N+  +A   +    +L 
Sbjct: 5  FALNLIRLRKQKGLSQKELAKKIGMLPQTISNIENQKGYPTFSNLDKIARYFNVSATELF 64


>gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia
          pseudomallei 1106a]
 gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1106b]
 gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1710a]
 gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1106a]
 gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1106b]
 gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1710a]
          Length = 202

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84


>gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK  +LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|291445471|ref|ZP_06584861.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291348418|gb|EFE75322.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 285

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  
Sbjct: 2  PSNVNPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRD 60

Query: 69 LAHTLDTPLWKLL 81
          L    +    +++
Sbjct: 61 LCGVYEVEDVRIV 73


>gi|241765974|ref|ZP_04763899.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241364066|gb|EER59302.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 124

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IRK++  +Q E+       ++++S LE G S   +  +  LA  L   + +L+
Sbjct: 23 FGEYLKTIRKDSDKSQAELAFDASMDRTYVSLLERGLSAPTLLVLDSLAKALGMTMTELM 82


>gi|254784460|ref|YP_003071888.1| DNA-binding protein [Teredinibacter turnerae T7901]
 gi|237686654|gb|ACR13918.1| DNA-binding protein [Teredinibacter turnerae T7901]
          Length = 185

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R E   TQ+++       +   + +E+G +   +  +  LA+ L   + +L+
Sbjct: 10 LAGNVRQLRSERGFTQQQMATLAQIPRPTWASIESGAANPTLSVLSKLANALQVSIEELV 69


>gi|167832382|ref|YP_001686773.1| prophage repressor [Halomonas phage phiHAP-1]
 gi|166836356|gb|ABY90405.1| prophage repressor [Halomonas phage phiHAP-1]
          Length = 234

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RM   +  R++R++  LT +E+ +  G      ++S +ET K   ++  +  +A  L T 
Sbjct: 12 RMDIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLNPSVYTVADIARALGTT 71

Query: 77 LWKLLK 82
          + +LLK
Sbjct: 72 VDELLK 77


>gi|126651869|ref|ZP_01724070.1| transcriptional regulator [Bacillus sp. B14905]
 gi|126591337|gb|EAZ85445.1| transcriptional regulator [Bacillus sp. B14905]
          Length = 188

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      IRK+  ++ +E+   +  + S +S++E G     I     +A  L+T L  LL
Sbjct: 3  FGKQVNFIRKKRGMSLQELSALSKVSTSMLSQIERGGKNPTITVACQIAEALNTTLSALL 62


>gi|159038022|ref|YP_001537275.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157916857|gb|ABV98284.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 191

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R +  +T  E+   TG ++S +S LE G+   +++ ++ +A     PL KL+
Sbjct: 13 GPRLKQARAQRGVTLAELAETTGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLV 71


>gi|94265975|ref|ZP_01289699.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93453478|gb|EAT03891.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 117

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 10  HLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
             +D  +  R  F             R  R+   LTQKE+    G  Q+ IS +E GK +
Sbjct: 37  ESADTSIPWREAFPEYADEEIPAVCLRAARRREGLTQKELAALAGIPQAHISLMERGKMS 96

Query: 61  INIDNMIILAHTLDT 75
           I +     LA  L+T
Sbjct: 97  IGVTRAKRLAKALNT 111


>gi|16764259|ref|NP_459874.1| transcriptional regulator [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|169257171|ref|YP_001700549.1| putative transcriptional regulator (repressor) [Salmonella phage
          Fels-1]
 gi|16419406|gb|AAL19833.1| predicted Fels-1 prophage transcriptional regulator [Salmonella
          enterica subsp. enterica serovar Typhimurium str. LT2]
          Length = 231

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK  K+T  ++   T +    IS LE G    +  ++  +A  L  P+ +L 
Sbjct: 5  VGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGYSAQSIQKIAEALQVPVSELF 64


>gi|194336093|ref|YP_002017887.1| transcriptional regulator, XRE family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308570|gb|ACF43270.1| transcriptional regulator, XRE family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 130

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 23  VNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N  +  R+   LTQ+++    G +  ++S++ET K T   + ++ +A  L+  L  ++
Sbjct: 66  GENPIKVWREYRGLTQQQLAETVGISTPYLSQIETSKRTGTTEVLLAVAKALNVTLDDIV 125


>gi|333023200|ref|ZP_08451264.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332743052|gb|EGJ73493.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 204

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R+ A LT +        + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75


>gi|291485885|dbj|BAI86960.1| putative transcriptional regulator [Bacillus subtilis subsp.
          natto BEST195]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R  RKE+ L+Q     + G   S++S LE GK +  + ++  ++ TL+ 
Sbjct: 7  LGHMIRKKRKESGLSQTVFAEKIGCTGSYVSRLENGKVSPTLKSLEQISQTLNI 60


>gi|260773859|ref|ZP_05882774.1| predicted transcriptional regulator [Vibrio metschnikovii CIP
          69.14]
 gi|260610820|gb|EEX36024.1| predicted transcriptional regulator [Vibrio metschnikovii CIP
          69.14]
          Length = 207

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      + +R    +T +E   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGPRIKQVRANLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L  P
Sbjct: 84 PQLFDP 89


>gi|260664469|ref|ZP_05865321.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|260561534|gb|EEX27506.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
          Length = 76

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78
          M      R+ RK  KLTQ+++   +G + ++IS +E  G   I+I  +  +A +L+    
Sbjct: 3  MCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTP 62

Query: 79 KLL 81
           L+
Sbjct: 63 SLI 65


>gi|257057003|ref|YP_003134835.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256586875|gb|ACU98008.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 411

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTP 76
          E +         R+   L+Q  +    G ++ W+S++E G+  +N ID ++ LA  L   
Sbjct: 6  EGLSIGERVAFYRRRRGLSQAVLAGLMGKSEDWVSKIERGERQVNRIDVLVELARQLRVT 65

Query: 77 LWKLL 81
          L  LL
Sbjct: 66 LNDLL 70


>gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sviceus ATCC 29083]
 gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sviceus ATCC 29083]
          Length = 509

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP9-BS68]
 gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP9-BS68]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium
          sp. ORS278]
          Length = 481

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q ++    G + S+++ +E  +  ++   ++ LA   D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|158320320|ref|YP_001512827.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158140519|gb|ABW18831.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 130

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R +RKE + +   IR  TG ++S ISE+E  KS+   + +  +A+ L+  +  
Sbjct: 1  MTLGEKIRALRKEKRYSIMNIRELTGLSKSTISEIENDKSSPTAETLQKIANALEVTVDT 60

Query: 80 LLK 82
            K
Sbjct: 61 FFK 63


>gi|56961997|ref|YP_173719.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56908231|dbj|BAD62758.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 63

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R++  LTQ E+ ++   ++  I  +E      ++   I LA  L+  L +L 
Sbjct: 3  NRVKQARRDLGLTQGELADKVNVSRQTIGLIEKNHYNPSLKLCIALAKALNKTLDQLF 60


>gi|290770159|gb|ADD61918.1| putative protein [uncultured organism]
          Length = 126

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK  +LTQ+E+ + +  +   I+ +E GK   +   +  LA  L   L  L+
Sbjct: 11 LGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSHLILRALAKVLHISLDTLI 70

Query: 82 KP 83
           P
Sbjct: 71 NP 72


>gi|302522960|ref|ZP_07275302.1| regulatory protein [Streptomyces sp. SPB78]
 gi|302431855|gb|EFL03671.1| regulatory protein [Streptomyces sp. SPB78]
          Length = 204

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R+ A LT +        + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75


>gi|256377995|ref|YP_003101655.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255922298|gb|ACU37809.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 197

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  R +RK A L+   +   +G ++  ++++E G++  ++  +  +A  L T    L
Sbjct: 12 LLGNRIRALRKAAGLSVVRLAELSGVSRRMLTQIELGQANPSLSTVDRVASALGTTFSAL 71


>gi|227535271|ref|ZP_03965320.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei
          subsp. paracasei ATCC 25302]
 gi|227187155|gb|EEI67222.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei
          subsp. paracasei ATCC 25302]
          Length = 192

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 32/58 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            + + +RK  ++TQK++    G  +  IS++E G  T++++ ++   + L+    +L
Sbjct: 40 GLHIKQLRKAQRITQKDLAAEIGTIEQTISKIERGVFTLSVETIMQFCNALNVTPNEL 97


>gi|254488744|ref|ZP_05101949.1| DNA-binding protein [Roseobacter sp. GAI101]
 gi|214045613|gb|EEB86251.1| DNA-binding protein [Roseobacter sp. GAI101]
          Length = 188

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            DAIL +        +  R    L+   +   +G ++S +S++E G+S+  I  +  L 
Sbjct: 4  DPDAILNQ---LPRRLKAARAAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLT 60

Query: 71 HTLDTPLWKLL 81
            L      LL
Sbjct: 61 RALQVDFAGLL 71


>gi|170760826|ref|YP_001787299.1| transcriptional regulator [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169407815|gb|ACA56226.1| transcriptional regulator [Clostridium botulinum A3 str. Loch
          Maree]
          Length = 200

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  +   K TQ ++    G ++S+I ++E G++  N   +  +A   + PL
Sbjct: 15 ARELKAEKIGKKFTQNDLAESLGKSRSYIGDIENGRTYPNYRLLAEIAKVCEVPL 69


>gi|167578709|ref|ZP_02371583.1| transcriptional regulator, Cro/CI family, putative [Burkholderia
          thailandensis TXDOH]
 gi|167616842|ref|ZP_02385473.1| transcriptional regulator, Cro/CI family, putative [Burkholderia
          thailandensis Bt4]
 gi|257140768|ref|ZP_05589030.1| Cro/CI family transcriptional regulator putative [Burkholderia
          thailandensis E264]
          Length = 183

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R +  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|149927273|ref|ZP_01915529.1| hypothetical protein LMED105_09865 [Limnobacter sp. MED105]
 gi|149823987|gb|EDM83210.1| hypothetical protein LMED105_09865 [Limnobacter sp. MED105]
          Length = 94

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          + F    +  R   +L+Q+++   +G  ++ I  +E GK + +++++  +   L+     
Sbjct: 5  LTFGLAVKKYRLARELSQEKLAELSGLHRNLIGLVERGKISASVESIFSICDALNIQPSA 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica
          CNB-440]
 gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica
          CNB-440]
          Length = 191

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ AK++ +++  + G +  ++S++E G    + + +  LA  L   
Sbjct: 14 IRDLRRSAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64


>gi|145224569|ref|YP_001135247.1| XRE family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|315444900|ref|YP_004077779.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
 gi|145217055|gb|ABP46459.1| transcriptional regulator, XRE family [Mycobacterium gilvum
          PYR-GCK]
 gi|315263203|gb|ADT99944.1| Helix-turn-helix protein [Mycobacterium sp. Spyr1]
          Length = 104

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R E   T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REVIGDVLRRARIEQGRTLREVSDSARVSLGYLSEVERGRKEASSELLSAICTALDVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 RVL 68


>gi|326790509|ref|YP_004308330.1| hypothetical protein Clole_1406 [Clostridium lentocellum DSM
          5427]
 gi|326541273|gb|ADZ83132.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 61

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
          N +  R +  +TQ E+  + G  +S++S +E GK   +  + M+ LA  L+T +  L 
Sbjct: 2  NVKIARLKKHMTQNELCEKVGICRSFLSRIENGKDGNVTKEVMLKLASILETDVVALF 59


>gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 115

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N + +RK   LTQ+++  RTG ++  I   ET +   +++++ +LA   +T   
Sbjct: 2  KTTVGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASYFNTSTD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC
          43243]
 gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC
          43243]
          Length = 368

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +   N+RK+   +Q+E+  R G ++  +S+ E  +S  ++D ++ L+         
Sbjct: 1  MILADKIINLRKKNGWSQEELAERLGVSRQSVSKYEGAQSVPDLDKILKLSEIFGVTTDY 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|212711417|ref|ZP_03319545.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens
          DSM 30120]
 gi|212685873|gb|EEB45401.1| hypothetical protein PROVALCAL_02490 [Providencia alcalifaciens
          DSM 30120]
          Length = 189

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   +    R+++ ++  E+  + G A+S +S+LE G    +I+ +  L   LD P  +
Sbjct: 12 ELISKSLACERQKSGMSLSELARKAGIAKSTLSQLEAGSGNPSIETLWALCVALDIPFSR 71

Query: 80 LLK 82
          L++
Sbjct: 72 LIE 74


>gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
 gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314]
 gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
 gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314]
          Length = 474

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 59


>gi|330899943|gb|EGH31362.1| DNA-binding protein [Pseudomonas syringae pv. japonica str.
          M301072PT]
          Length = 90

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+   LTQ++    +G  ++++SE+E G  +  ++ +  LA  +     +LL
Sbjct: 8  GAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLELL 64


>gi|258509371|ref|YP_003172122.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257149298|emb|CAR88271.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus
          GG]
 gi|259650650|dbj|BAI42812.1| transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 215

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  +  R++  LTQ ++  +   +   IS  E G+S  +I  ++ ++     PL +
Sbjct: 1  MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQIPLDQ 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|258511056|ref|YP_003184490.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477782|gb|ACV58101.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 206

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R++R   KL+  ++  +TG + + IS LE         D +  LA  L  P  +L
Sbjct: 6  FGEYLRSLRLARKLSINQLAEKTGISAAHISRLERNVREVPRPDTLRKLALGLGVPFDEL 65

Query: 81 LK 82
          L+
Sbjct: 66 LR 67



 Score = 43.8 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINID 64
           R   +  +       +     + +R+   L+  ++ +  G ++++++ LE+ +     + 
Sbjct: 67  RAAGYSEEQYEYNTKVLSRRLQRLRESKGLSLSDVAHIAGISEAYLARLESAEGRLPGVT 126

Query: 65  NMIILAHTLDTPLWKLL 81
            +  LA   D     L+
Sbjct: 127 TLHRLAQVFDVTPAYLV 143


>gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 143

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R++  LT+ ++   +G +QS +SE+E G     I  +  +   L+  L    
Sbjct: 4  GKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLADFF 62


>gi|148266050|ref|YP_001232756.1| helix-turn-helix domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146399550|gb|ABQ28183.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4]
          Length = 356

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW--ISELETGKSTINIDNMIILAHTLDTP 76
          + IF       R+   ++ + +    G   S+  +   E G+   + D +I +A  LD P
Sbjct: 7  KEIFGRRLSQARRMRGMSLRAVAEAIGGKVSYNALHRYECGEMMPSDDVLIPVADVLDKP 66

Query: 77 LWKLLKP 83
          L    +P
Sbjct: 67 LDFFFRP 73


>gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R]
 gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 474

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 59


>gi|76817873|ref|YP_337176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710b]
 gi|217424647|ref|ZP_03456145.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576]
 gi|254185399|ref|ZP_04891987.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1655]
 gi|254187284|ref|ZP_04893798.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|76582346|gb|ABA51820.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1710b]
 gi|157934966|gb|EDO90636.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          Pasteur 52237]
 gi|184209634|gb|EDU06677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei
          1655]
 gi|217392571|gb|EEC32595.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576]
          Length = 189

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R +  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 11 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|313904105|ref|ZP_07837485.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
           6]
 gi|313471254|gb|EFR66576.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
           6]
          Length = 123

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +AI  E M  +    + R    LTQKE+  RTG  Q+ IS+LE G    +++ +  LA  
Sbjct: 50  EAIQPE-MDVIRAIVDARTSQNLTQKELAERTGINQADISKLENGTRNPSVNLLKRLAEG 108

Query: 73  LDTPLWKLLKP 83
           +   L     P
Sbjct: 109 MGMTLKIEFVP 119


>gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1]
 gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1]
          Length = 370

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +    N  N+RK+  +TQ+ +    G  ++ +S+ ETG+S  ++  +  LA   D  +
Sbjct: 2  EELSLSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|293570317|ref|ZP_06681377.1| DNA-binding protein [Enterococcus faecium E980]
 gi|291609596|gb|EFF38858.1| DNA-binding protein [Enterococcus faecium E980]
          Length = 370

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +    N  N+RK+  +TQ+ +    G  ++ +S+ ETG+S  ++  +  LA   D  +
Sbjct: 2  EELSLSKNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|291532703|emb|CBL05816.1| Helix-turn-helix [Megamonas hypermegale ART12/1]
          Length = 80

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTL 73
            E           RK  K TQ+E+  R   + S++S +E G  K  + I  ++ +A  L
Sbjct: 11 ESEYRQIGAKIMYFRKMKKYTQEELAFRASISASYLSRIERGVYKKGLPISTLMKIAKAL 70

Query: 74 DTPLWKLLK 82
          +  L  + +
Sbjct: 71 EVELSAIFE 79


>gi|228949497|ref|ZP_04111751.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228810220|gb|EEM56587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 184

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|257066745|ref|YP_003153001.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256798625|gb|ACV29280.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 491

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RKE  +TQK + + TG  ++ IS LE+   T +ID +  +   LD  +  + +
Sbjct: 17 RKEKGITQKSLADTTGINRAMISRLESCDYTPSIDQLQAIGEVLDFEVVDMFE 69


>gi|227325994|ref|ZP_03830018.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 201

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   L+  E+  R G A+S +S+LE+G    +++ +  LA  LD  + +L+
Sbjct: 31 IRRERERLNLSVTELAKRAGLAKSTLSQLESGVGNPSLETLWALAMALDVQVSQLI 86


>gi|188585658|ref|YP_001917203.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350345|gb|ACB84615.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 89

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +RKE  L+QKE+  + G  QS IS LE      +I+ +  +A   D  L
Sbjct: 31 RQVIKLRKEKGLSQKELAEKIGTKQSAISRLENESYNPSIELLYKIAKACDRDL 84


>gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae
          TIGR4]
 gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae
          TIGR4]
 gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat
          Chromosomal Toxin-Antitoxin System Of The Human
          Pathogen Streptococcus Pneumoniae
 gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat
          Chromosomal Toxin-Antitoxin System Of The Human
          Pathogen Streptococcus Pneumoniae
 gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat
          Chromosomal Toxin-Antitoxin System Of The Human
          Pathogen Streptococcus Pneumoniae
 gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat
          Chromosomal Toxin-Antitoxin System Of The Human
          Pathogen Streptococcus Pneumoniae
 gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae
          TIGR4]
          Length = 158

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|332157993|ref|YP_004423272.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2]
 gi|331033456|gb|AEC51268.1| hypothetical protein PNA2_0351 [Pyrococcus sp. NA2]
          Length = 192

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           + + IRK   +TQ+E+  + G  Q++I++LE GK    +     +   L
Sbjct: 11 RDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60


>gi|308179920|ref|YP_003924048.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp.
          plantarum ST-III]
 gi|308045411|gb|ADN97954.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp.
          plantarum ST-III]
          Length = 102

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +++RK  KLTQ E+  +   ++  I+  E GK+  +I+ +I +   LDT    LL
Sbjct: 4  FGDKLKSLRKAKKLTQVELAQQLDISKWAITSYEQGKTYPSIEVLIKICSVLDTSSDYLL 63


>gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13]
 gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40]
 gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 203

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     ++R    LTQ+++ +  G   S IS  E+G++      ++ LA  L     +LL
Sbjct: 39 FATKLISLRSAQNLTQQQLADAVGITPSQISRYESGQAKPRKIILLRLADALGVSSTELL 98

Query: 82 K 82
          +
Sbjct: 99 Q 99


>gi|295104565|emb|CBL02109.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 106

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  RK   LTQ++   +   +   +  +E G+   +ID ++ +A +L T L  L+
Sbjct: 9  GKRIQKARKAHGLTQEQFAIKLNISDRHLGRIERGECAASIDLLVEVAVSLKTTLDFLI 67


>gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6]
 gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF]
 gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636]
 gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6]
 gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF]
 gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636]
          Length = 250

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    + +R E  +T +E+  + G  ++ +S  E G+ +  +  + +LA+     +  
Sbjct: 4  KLFPQRLKELRAEKGITLEELAKKIGTTKTTLSRYENGERSPKLQLVGLLANYFQVEMSW 63

Query: 80 L 80
          L
Sbjct: 64 L 64


>gi|229489782|ref|ZP_04383639.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
          SK121]
 gi|229323292|gb|EEN89056.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
          SK121]
          Length = 211

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+  +LT  ++    G  + ++S+LE      ++  +I +   L+ P+  L +
Sbjct: 16 GARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIKVCAVLEIPVGSLFE 75


>gi|187935844|ref|YP_001893672.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B]
 gi|187723996|gb|ACD14202.1| putative LexA repressor [Clostridium botulinum B str. Eklund 17B]
          Length = 235

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +IF  N + +R   K+ Q+++  + G A+S IS  ET KS   +  +I +A+  +  + +
Sbjct: 6  LIFSKNLKKLRTFNKMKQEDLAVKIGVARSNISYYETQKSEPTLTPLINIANIFNVTINE 65

Query: 80 LLK 82
          L+ 
Sbjct: 66 LVT 68



 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 14  AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            +     IF  N + +R    + Q E+      ++S IS  E+G+S   +  ++ +    
Sbjct: 88  KVFSSSEIFSKNLKELRIGKNMYQIELAKEVKTSKSNISFYESGRSEPTLGVLMRICDFF 147

Query: 74  DTPLWKLL 81
           +  L +L+
Sbjct: 148 NIKLSELV 155


>gi|90421045|ref|ZP_01228948.1| conserved hypothetical protein, possible transcriptional regulator
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90334680|gb|EAS48457.1| conserved hypothetical protein, possible transcriptional regulator
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 313

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 12  SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
             A+ R R    +  R  R++ + +Q  +    G +Q  +S LE+G+S  +   ++ LA 
Sbjct: 35  DTAMTRARQSAGDLLRQWRQQRRFSQLALALDAGISQRHLSFLESGRSAPSRAMLLRLAD 94

Query: 72  TLDTPL 77
            LD PL
Sbjct: 95  HLDMPL 100


>gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 182

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             F+ +R++A L+Q+E+  R G    +IS++E    + ++ ++  L   + T + +  
Sbjct: 6  GTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSMAEFF 64


>gi|255974976|ref|ZP_05425562.1| predicted protein [Enterococcus faecalis T2]
 gi|255967848|gb|EET98470.1| predicted protein [Enterococcus faecalis T2]
          Length = 239

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N+ +  R E  LTQ E+  +    +  IS  E  KS  NID +I L+   +  L +LLK
Sbjct: 4  GNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLK 63


>gi|308235773|ref|ZP_07666510.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018]
 gi|311114939|ref|YP_003986160.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019]
 gi|310946433|gb|ADP39137.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019]
          Length = 67

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE  +TQ+E+ +    ++  +  LE G+   +I     +A   +  + ++ 
Sbjct: 3  NRLEQIRKEKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60


>gi|225389735|ref|ZP_03759459.1| hypothetical protein CLOSTASPAR_03483 [Clostridium asparagiforme
          DSM 15981]
 gi|225044204|gb|EEG54450.1| hypothetical protein CLOSTASPAR_03483 [Clostridium asparagiforme
          DSM 15981]
          Length = 82

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 17 RERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGK-STINIDNMIILAHTL 73
           ER I         RK+A LTQ+ +  R G + +++ ++E TG    ++++ +  +A  L
Sbjct: 12 PERYITLGLKIAYYRKKAGLTQEVLAERIGKSVNFVGQVEGTGTIRGVSLETLFKIAQVL 71

Query: 74 DTPLWKLLK 82
               KLL+
Sbjct: 72 KIQPSKLLE 80


>gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum
          DSM 5476]
 gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum
          DSM 5476]
          Length = 172

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  RK+  L+Q+++  + G ++  I++ E G ++  ++ ++ L+         LLK
Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLK 70


>gi|254383791|ref|ZP_04999139.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194342684|gb|EDX23650.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 294

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R++  +T +++  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCDV 64

Query: 73 LDTPLWKLL 81
           +    +L+
Sbjct: 65 YEVEDRRLV 73


>gi|169829608|ref|YP_001699766.1| SinR protein [Lysinibacillus sphaericus C3-41]
 gi|168994096|gb|ACA41636.1| SinR protein [Lysinibacillus sphaericus C3-41]
          Length = 300

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
            F     N RKE KLT +E   R G +  ++S+LE  K    + + +  +A+ LD  
Sbjct: 34 ETFGEVISNARKEKKLTLREAAKRIGISHPYLSQLEKNKNKNPSFEILYKIAYELDVS 91


>gi|167032884|ref|YP_001668115.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859372|gb|ABY97779.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 197

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 35/67 (52%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L +R +     R +RK  ++T K++   +G   S +S++E  + +++ + +   A  L+ 
Sbjct: 7  LLDRAVVGQRLRQVRKARQMTLKQLSEASGVPVSTLSKMELAQVSVSYEKLAAAARALNV 66

Query: 76 PLWKLLK 82
           + +L +
Sbjct: 67 DIAQLFR 73


>gi|83717911|ref|YP_440137.1| Cro/CI family transcriptional regulator [Burkholderia
          thailandensis E264]
 gi|83651736|gb|ABC35800.1| transcriptional regulator, Cro/CI family, putative [Burkholderia
          thailandensis E264]
          Length = 189

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R +  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 11 VATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|15607615|ref|NP_214988.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          H37Rv]
 gi|15839863|ref|NP_334900.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
          CDC1551]
 gi|31791654|ref|NP_854147.1| transcriptional regulatory protein [Mycobacterium bovis
          AF2122/97]
 gi|121636390|ref|YP_976613.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148660241|ref|YP_001281764.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|148821673|ref|YP_001286427.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167970705|ref|ZP_02552982.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|215402227|ref|ZP_03414408.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215409992|ref|ZP_03418800.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215425701|ref|ZP_03423620.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215444577|ref|ZP_03431329.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218752108|ref|ZP_03530904.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|219556293|ref|ZP_03535369.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224988862|ref|YP_002643549.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253797402|ref|YP_003030403.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254230822|ref|ZP_04924149.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C]
 gi|254363439|ref|ZP_04979485.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254549422|ref|ZP_05139869.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260185342|ref|ZP_05762816.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260199473|ref|ZP_05766964.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260203626|ref|ZP_05771117.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289441856|ref|ZP_06431600.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289446017|ref|ZP_06435761.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289552725|ref|ZP_06441935.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289568393|ref|ZP_06448620.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289573061|ref|ZP_06453288.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289744172|ref|ZP_06503550.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289748964|ref|ZP_06508342.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289756549|ref|ZP_06515927.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|289760592|ref|ZP_06519970.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|294995981|ref|ZP_06801672.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          210]
 gi|297632959|ref|ZP_06950739.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          KZN 4207]
 gi|297729934|ref|ZP_06959052.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          KZN R506]
 gi|298523952|ref|ZP_07011361.1| transcriptional regulator, PbsX family [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306774572|ref|ZP_07412909.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306779320|ref|ZP_07417657.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306783110|ref|ZP_07421432.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306787478|ref|ZP_07425800.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306792029|ref|ZP_07430331.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306796215|ref|ZP_07434517.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306802073|ref|ZP_07438741.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306806284|ref|ZP_07442952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306966480|ref|ZP_07479141.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306970676|ref|ZP_07483337.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307078400|ref|ZP_07487570.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307082959|ref|ZP_07492072.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313657263|ref|ZP_07814143.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          KZN V2475]
 gi|81669532|sp|O53759|Y474_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          Rv0474/MT0491
 gi|2909550|emb|CAA17429.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|13879998|gb|AAK44714.1| transcriptional regulator, PbsX family [Mycobacterium
          tuberculosis CDC1551]
 gi|31617240|emb|CAD93347.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121492037|emb|CAL70500.1| Probable transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|124599881|gb|EAY58891.1| hypothetical protein TBCG_00466 [Mycobacterium tuberculosis C]
 gi|134148953|gb|EBA40998.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148504393|gb|ABQ72202.1| PbsX family transcriptional regulator [Mycobacterium tuberculosis
          H37Ra]
 gi|148720200|gb|ABR04825.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224771975|dbj|BAH24781.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253318905|gb|ACT23508.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289414775|gb|EFD12015.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289418975|gb|EFD16176.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289437357|gb|EFD19850.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289537492|gb|EFD42070.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289542146|gb|EFD45795.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289684700|gb|EFD52188.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289689551|gb|EFD56980.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289708098|gb|EFD72114.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|289712113|gb|EFD76125.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|298493746|gb|EFI29040.1| transcriptional regulator, PbsX family [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308216919|gb|EFO76318.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308327764|gb|EFP16615.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308332127|gb|EFP20978.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308335853|gb|EFP24704.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339516|gb|EFP28367.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308343384|gb|EFP32235.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308347293|gb|EFP36144.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308351223|gb|EFP40074.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308355876|gb|EFP44727.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308359797|gb|EFP48648.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308363736|gb|EFP52587.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308367393|gb|EFP56244.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323721149|gb|EGB30211.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326902301|gb|EGE49234.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328457188|gb|AEB02611.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 140

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K      + A      I  +  R+ R+ A ++ +++  R+G +  ++S++E G    + D
Sbjct: 6  KLAAKVSTKASDVASDI-GSFIRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSAD 64

Query: 65 NMIILAHTLDTPLWKL 80
           +  +A  L      L
Sbjct: 65 VLSQIAKALRVSAEVL 80


>gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 197

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R+ A L+Q+ +  R     + IS++E+ + + +I ++  +   L   + +  
Sbjct: 11 VGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRISPSIASLRRILGGLGLSMAEFF 70

Query: 82 KP 83
          +P
Sbjct: 71 EP 72


>gi|324993465|gb|EGC25385.1| transcriptional regulator [Streptococcus sanguinis SK405]
 gi|327458828|gb|EGF05176.1| transcriptional regulator [Streptococcus sanguinis SK1057]
          Length = 65

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++ +  G  +  I  +E GK   ++   + +   L+  L +L 
Sbjct: 6  RLKMARAERDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62


>gi|296159361|ref|ZP_06842186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295890345|gb|EFG70138.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 191

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  R +R+  K T  E+    G ++ ++S++E G +T +I +++ +A  L  
Sbjct: 16 GSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIARALGV 68


>gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN]
 gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN]
          Length = 188

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          ++KR         L    I   N R +RK+   TQK+   +    +  +S++E G  + +
Sbjct: 11 KKKRQPITGVQLKLTTGQIIGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVFSPS 70

Query: 63 IDNMIILAHTLDTPLWKLL 81
           D+++ +          L+
Sbjct: 71 TDSLMNICTIFGVTPNDLM 89


>gi|257085321|ref|ZP_05579682.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          Fly1]
 gi|293382363|ref|ZP_06628302.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis R712]
 gi|293389375|ref|ZP_06633833.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis S613]
 gi|312907395|ref|ZP_07766386.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis DAPTO 512]
 gi|312910013|ref|ZP_07768860.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis DAPTO 516]
 gi|256993351|gb|EEU80653.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          Fly1]
 gi|291080308|gb|EFE17672.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis R712]
 gi|291081262|gb|EFE18225.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis S613]
 gi|310626423|gb|EFQ09706.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis DAPTO 512]
 gi|311289286|gb|EFQ67842.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis DAPTO 516]
 gi|315575524|gb|EFU87715.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0309B]
 gi|315577563|gb|EFU89754.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0630]
 gi|315580035|gb|EFU92226.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0309A]
          Length = 102

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTP 76
          F    + +R+   L   ++  ++G   S IS LE G +     D +  LA  L   
Sbjct: 3  FGEKLKYLRESKGLGVNQLALKSGVNASNISRLEKGIRKDPTFDTVKKLAKALGVS 58


>gi|253990606|ref|YP_003041962.1| regulatory protein DicA [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782056|emb|CAQ85220.1| similar to dica, regulator of dicb encoded by prophage cp-933
          (putative regulatory protein) [Photorhabdus
          asymbiotica]
          Length = 135

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78
                 + +R + K++Q  +    G+ +QS I   E+G   ++ D+ +IL+  L     
Sbjct: 5  ESIGARIKRLRNQQKMSQAALAELCGWASQSRIGNYESGIRNVSTDDAVILSKALGVSPA 64

Query: 79 KLL 81
          +L+
Sbjct: 65 ELM 67


>gi|297198135|ref|ZP_06915532.1| transcriptional regulatory protein [Streptomyces sviceus ATCC
          29083]
 gi|197714170|gb|EDY58204.1| transcriptional regulatory protein [Streptomyces sviceus ATCC
          29083]
          Length = 201

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T   +  R G ++  + ++E  ++  ++  ++ +   L   +  
Sbjct: 20 QSLARNVKRWRTERGFTLDTLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITT 79

Query: 80 LL 81
          LL
Sbjct: 80 LL 81


>gi|219847677|ref|YP_002462110.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM
          9485]
 gi|219541936|gb|ACL23674.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM
          9485]
          Length = 181

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +R+E  LT +E+   +G   S++S LE  K  I++ N+  LA      +  
Sbjct: 1  MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVKMTH 60

Query: 80 LLK 82
            +
Sbjct: 61 FFE 63


>gi|91782830|ref|YP_558036.1| transcriptional regulator [Burkholderia xenovorans LB400]
 gi|91686784|gb|ABE29984.1| Transcriptional Regulator, XRE(MerR) family with Cupin sensor
          domain [Burkholderia xenovorans LB400]
          Length = 191

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  R +R+  K T  E+    G ++ ++S++E G +T +I +++ +A  L  
Sbjct: 16 GSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIARALGV 68


>gi|71734040|ref|YP_276442.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554593|gb|AAZ33804.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|115265594|dbj|BAF32856.1| RtrR protein [Pseudomonas syringae pv. actinidiae]
 gi|115265646|dbj|BAF32907.1| RtrR protein [Pseudomonas syringae pv. phaseolicola]
 gi|330966722|gb|EGH66982.1| RtrR protein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 76

 Score = 51.2 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      
Sbjct: 6  KALGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLACDPSG 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|318058268|ref|ZP_07976991.1| DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318078843|ref|ZP_07986175.1| DNA-binding protein [Streptomyces sp. SA3_actF]
          Length = 204

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R+ A LT +        + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75


>gi|317471621|ref|ZP_07930965.1| hypothetical protein HMPREF1011_01313 [Anaerostipes sp.
          3_2_56FAA]
 gi|316900936|gb|EFV22906.1| hypothetical protein HMPREF1011_01313 [Anaerostipes sp.
          3_2_56FAA]
          Length = 114

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER +       IRKE  LT + +          I ++E+G    ++   I +   L T  
Sbjct: 4  ERRLLGKRINQIRKERGLTSEALSEICDVNAGHIRQIESGIRLPSLPLFIRICQALKTAP 63

Query: 78 WKLLK 82
           ++LK
Sbjct: 64 NEILK 68


>gi|317472077|ref|ZP_07931409.1| hypothetical protein HMPREF1011_01759 [Anaerostipes sp.
          3_2_56FAA]
 gi|316900481|gb|EFV22463.1| hypothetical protein HMPREF1011_01759 [Anaerostipes sp.
          3_2_56FAA]
          Length = 95

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R    LTQK++ +RTG  Q+ IS+LE G     ++ +  LA  +   L     P
Sbjct: 37 ARISQNLTQKQLSDRTGIDQADISKLENGTRNPTLNLLKRLADGMGMSLKIEFIP 91


>gi|315612466|ref|ZP_07887379.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
 gi|315315447|gb|EFU63486.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
          Length = 188

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ ++       QS   + E GK+ ++I+N  ILA         LL
Sbjct: 3  NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSTPYLL 60


>gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 81

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN  ++RKE  + Q E+  + G ++  IS +E G    +I   + LA   +  +  + 
Sbjct: 17 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSIVVALSLARVFEVKVEDIF 74


>gi|212638622|ref|YP_002315142.1| putative xre family transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212560102|gb|ACJ33157.1| Predicted transcriptional regulator, xre family [Anoxybacillus
          flavithermus WK1]
          Length = 74

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  R +  LTQKEI    G ++S  + +E G+   ++     +A  L 
Sbjct: 5  LKKKRLDTGLTQKEIAKLVGISRSTYAMIENGERNPSVSVAKRIADALK 53


>gi|295835540|ref|ZP_06822473.1| DNA-binding protein [Streptomyces sp. SPB74]
 gi|197699432|gb|EDY46365.1| DNA-binding protein [Streptomyces sp. SPB74]
          Length = 204

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +R+ A LT +        + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 16 VAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELL 75


>gi|162450781|ref|YP_001613148.1| nitrogen regulatory IIA protein [Sorangium cellulosum 'So ce 56']
 gi|161161363|emb|CAN92668.1| nitrogen regulatory IIA protein [Sorangium cellulosum 'So ce 56']
          Length = 289

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R EA L+ + + +R G + +++S +E G       D +  +A  LD P   L
Sbjct: 19 FGATLRLLRVEAGLSLRALAHRIGVSSAYLSRVEHGHDAIPTPDRLTAIAGALDLPPAVL 78

Query: 81 LK 82
          L+
Sbjct: 79 LE 80


>gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 115

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N +N+RK   LTQ+++  RTG ++  I   ET +   +++++ ILA   +T   
Sbjct: 2  KTTVGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|54025826|ref|YP_120068.1| hypothetical protein nfa38560 [Nocardia farcinica IFM 10152]
 gi|54017334|dbj|BAD58704.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 145

 Score = 50.8 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R  R     T +E+      +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 5  REAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVPLS 64

Query: 79 KLL 81
          ++L
Sbjct: 65 RVL 67


>gi|319900198|ref|YP_004159926.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108]
 gi|319415229|gb|ADV42340.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108]
          Length = 101

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               + RKEAK+TQ E+  R    +S+IS +E G  T ++     +   L   +  +++
Sbjct: 40 GQILLDARKEAKVTQSELAKRINSTKSYISRIENGDITPSVGVFYRIIDALGLRI-DIVR 98

Query: 83 P 83
          P
Sbjct: 99 P 99


>gi|317057355|ref|YP_004105822.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449624|gb|ADU23188.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 210

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  N++ +R +  LTQKE+        S IS++E  K+   I+ +             LL
Sbjct: 15 YGENYKRLRTDKGLTQKELAKALNIVHSTISDIEKSKNPPTIEQLQAYHKYFGVSYEYLL 74


>gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidases) [Faecalibacterium prausnitzii L2-6]
          Length = 210

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  RK+  ++Q E+ ++ G  Q  + + E+GKS+ +   +  +A  L T    
Sbjct: 1  MSFSELLKQCRKQKGISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADF 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 202

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK+ + T  ++   TG + S +S LE+G     ++ +  LA      L +L+
Sbjct: 12 VGPRLRALRKQKETTLTDLSAATGISVSTLSRLESGSRRPTLELLFPLARAYGVTLDELV 71


>gi|227112403|ref|ZP_03826059.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 197

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   L+  E+  R G A+S +S+LETG    +++ +  LA  LD  + +L+
Sbjct: 27 IRRERERLNLSVTELAKRAGLAKSTLSQLETGIGNPSLETLWALAMALDVQVSQLI 82


>gi|254516541|ref|ZP_05128600.1| transcriptional regulator, XRE family [gamma proteobacterium
          NOR5-3]
 gi|219674964|gb|EED31331.1| transcriptional regulator, XRE family [gamma proteobacterium
          NOR5-3]
          Length = 186

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +R+   +T +++   +G ++S +S++E  K+   +     +A T    + +L
Sbjct: 8  LLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERCKANPTLAVTQRIAQTFGISIGEL 67

Query: 81 L 81
          +
Sbjct: 68 V 68


>gi|158423127|ref|YP_001524419.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
 gi|158330016|dbj|BAF87501.1| transcriptional regulator [Azorhizobium caulinodans ORS 571]
          Length = 249

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R+IR++  LT  ++ N  G +   +S++E G+ + ++  +  +A  L+ P+  L 
Sbjct: 66  LGIQVRSIRRQLDLTVSDLANAAGISVGMLSKIENGQISPSLSTLQSVARALNVPITALF 125


>gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus]
          Length = 113

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+A  TQ E+  + G +Q   +  E G      DN++ +A  L+  +  L+
Sbjct: 3  FSERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKKPTQDNLVRIAQILNVSVDYLV 62


>gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316]
 gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316]
          Length = 65

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +RK+A L+Q+ + ++ G  +  IS  E G   I+ DN   L+      +  LL+
Sbjct: 7  NRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLLE 65


>gi|322412918|gb|EFY03825.1| hypothetical protein SDD27957_00030 [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 121

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R + +L+Q  +  +   ++  IS+ E G +T +++N++ L    D  L +L 
Sbjct: 4  VAEQLKQLRVKHQLSQDALAEQLFISRQAISKWENGDTTSDLENLVRLTEIFDVNLDELF 63


>gi|317056800|ref|YP_004105267.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449069|gb|ADU22633.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 296

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +RK+ KL+Q+ +  + G ++  +++ ET +   +I N++ L+      + +LL
Sbjct: 3  FADKLRELRKQEKLSQEALAAKIGVSRQAVTKWETERGLPDIGNIMELSALFGVTVEELL 62


>gi|289671819|ref|ZP_06492709.1| peptidase [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78
          F +  +  R+ AKL Q E+  R G  Q+ IS+LE GKS     ++  +A       LW
Sbjct: 3  FKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKATA-HVAKIADVCGVNALW 59


>gi|258512203|ref|YP_003185637.1| transcriptional regulator of molybdate metabolism, XRE family
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
 gi|257478929|gb|ACV59248.1| transcriptional regulator of molybdate metabolism, XRE family
          [Alicyclobacillus acidocaldarius subsp. acidocaldarius
          DSM 446]
          Length = 368

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RM F N  R +R+ A L + E+  R G     +  +E GK + +    + LA  L T + 
Sbjct: 14 RMKFPNAVRPLREMAGLNRSELARRAGITPQALGLIEQGKVSPSTHVALRLAKALGTTVE 73

Query: 79 KLLKP 83
           L  P
Sbjct: 74 SLFDP 78


>gi|256423763|ref|YP_003124416.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256038671|gb|ACU62215.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 113

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++ F      +RK+ KL+Q EI  + G   + I   E  +   +I+    +A  L+  L
Sbjct: 2  KQITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIATALEVSL 61

Query: 78 WKLL 81
            L+
Sbjct: 62 DYLV 65


>gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176]
 gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176]
          Length = 269

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +   N + IRK   L+Q+E+  +    +  IS+ E G S  + + +I ++  L+TP+  L
Sbjct: 101 MLSQNLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETPVSIL 160

Query: 81  L 81
           L
Sbjct: 161 L 161


>gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM
          15053]
 gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM
          15053]
          Length = 114

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  R +R    L+Q+E+    G ++S ++  E G+   N + + ++A         LL
Sbjct: 10 FANVLRLLRNGRGLSQQELALSLGISKSAVNMYERGERQPNFETLELIADFFKVDTDYLL 69


>gi|224024133|ref|ZP_03642499.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM
          18228]
 gi|224017355|gb|EEF75367.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM
          18228]
          Length = 192

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R   ++T +E+  RTG ++  I  +E   +  ++  ++ +A  L   L
Sbjct: 5  KIIGEKIKALRTAQEITLEELAERTGLSKEQIESIEQNINIPSLAPLVKIARALGVRL 62


>gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 122

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  RK+A LTQ+++ +  G  +  +S  E G   I+I+ +  LA      L
Sbjct: 11 GQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYTL 65


>gi|220934873|ref|YP_002513772.1| transcriptional regulator, XRE family [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219996183|gb|ACL72785.1| transcriptional regulator, XRE family [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 218

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R+   LT  ++ +  G ++  +S++E G+ + +++ +  L+  L   L +L K
Sbjct: 39 LREKRQAQSLTIADVADLAGVSRGMLSKIENGQVSTSLETLRKLSGVLGMTLAQLFK 95


>gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5]
 gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5]
          Length = 476

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +R+        R++R++  LTQ  +  R G + S+++ +E  + +++   +I LA  LD 
Sbjct: 1  MRDAAHLGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHNRRSLSAPLLIKLADILDL 60

Query: 76 PLWKL 80
           L  L
Sbjct: 61 DLKAL 65


>gi|194467602|ref|ZP_03073589.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454638|gb|EDX43535.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 110

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
           N    R    LTQ+++  +   + +++S+LE G   T++ + +  LA+ L+  + +LL
Sbjct: 6  QNIVKQRHALHLTQEKLAEKARMSVNFLSKLERGASRTVSAETLQHLANALEISMEELL 64


>gi|315031865|gb|EFT43797.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315171137|gb|EFU15154.1| helix-turn-helix protein [Enterococcus faecalis TX1342]
          Length = 184

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R E  L+Q E+ +    ++  IS  E G++   ++N++++++  D PL   L
Sbjct: 21 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFL 79


>gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 139

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N + +R E  ++Q+ + ++    +  IS+ E G S  + D +I L+   +  +  L
Sbjct: 1  MFHENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|289672657|ref|ZP_06493547.1| DNA-binding protein [Pseudomonas syringae pv. syringae FF5]
          Length = 99

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+   LTQ++    +G  ++++SE+E G  +  ++ +  LA  +     +LL
Sbjct: 17 GAALKEAREAKGLTQEDFVGVSG--RTYLSEIERGLKSPTLEKLDQLATRIGIHPLELL 73


>gi|317048764|ref|YP_004116412.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316950381|gb|ADU69856.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 185

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+E  L+Q+ +   +G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|256618071|ref|ZP_05474917.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|256597598|gb|EEU16774.1| predicted protein [Enterococcus faecalis ATCC 4200]
 gi|295114477|emb|CBL33114.1| Predicted transcriptional regulators [Enterococcus sp. 7L76]
          Length = 167

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R E  L+Q E+ +    ++  IS  E G++   ++N++++++  D PL   L
Sbjct: 4  GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFL 62


>gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2M]
 gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2]
 gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2]
 gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2M]
          Length = 205

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P   DA + ER+      R +R     T   +  R G ++S IS +E   ++     + 
Sbjct: 6  SPTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLD 63

Query: 68 ILAHTLDTPLWKLL 81
           LA  L   L  L 
Sbjct: 64 KLAAGLGISLAGLF 77


>gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 272

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N    RKE +LTQ+ + ++ G     +S+ ETG++  +I  +  L+  LD  + 
Sbjct: 2  RDMLAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61

Query: 79 KLL 81
          KL 
Sbjct: 62 KLF 64


>gi|149916994|ref|ZP_01905495.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149822272|gb|EDM81663.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 130

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R E  L+Q+E+  R G A + IS+LET + + ++D +  +A  LD  + 
Sbjct: 7  RESLAEVVRGRRAELGLSQRELAKRAGVADATISKLETQQLSPSLDTLAKIAAGLDLDVA 66

Query: 79 KLL 81
           L+
Sbjct: 67 ALI 69


>gi|28628140|gb|AAO34623.1| unknown [Erwinia chrysanthemi]
          Length = 119

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK A LTQ+ + +R     + I   E G +   +D +I LA  L   L  L+
Sbjct: 13 FPARLIQLRKAADLTQQALADRASIHVNQIRRYEAGSAQPTLDALIRLAKVLRVSLDGLV 72


>gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3]
 gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3]
          Length = 476

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R +F     + +R++  LTQ  +    G + S+++ +E  +  ++   ++ LA T D  
Sbjct: 6  DRKLFLGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVD 65

Query: 77 LWKL 80
          L  L
Sbjct: 66 LRSL 69


>gi|167772036|ref|ZP_02444089.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM
          17241]
 gi|167665834|gb|EDS09964.1| hypothetical protein ANACOL_03410 [Anaerotruncus colihominis DSM
          17241]
          Length = 96

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKLL 81
              +  RK+  ++Q+E+  ++  + S IS +E+  +   +I  +  +A  L+   ++LL
Sbjct: 34 GFRIQFFRKKCGMSQEELAEKSNLSYSTISHIESTSTYPMSIIALYRIAAALNIAPYQLL 93


>gi|302541725|ref|ZP_07294067.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302459343|gb|EFL22436.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC
          53653]
          Length = 199

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+ + LT +   +R G + + +S LETG+   ++  ++ LA T  T +  LL
Sbjct: 4  VAPRLRDLRRGSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSDLL 63


>gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 184

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+  K+TQKE   R G ++  I + E+G+  + ID +  +A+ L+ P  +LL
Sbjct: 8  GKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELL 66


>gi|260550053|ref|ZP_05824267.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260406808|gb|EEX00287.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 197

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R     T   +  R   ++S IS +E G+++     +  LA+ L+ PL K+  
Sbjct: 9  AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTKIFT 68


>gi|320009434|gb|ADW04284.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 167

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|296125757|ref|YP_003633009.1| XRE family transcriptional regulator [Brachyspira murdochii DSM
          12563]
 gi|296017573|gb|ADG70810.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM
          12563]
          Length = 527

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 25 NFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N ++IR K  KLTQ +     G  Q +IS LE   + I +D +  LA      + +L K
Sbjct: 5  NLKDIREKILKLTQSQFAKMLGVRQDYISRLERNANNITLDLLDKLAENTGLSIDELTK 63


>gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RK   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGISSVSTELIDRICKKFNVSYIDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +      +++R +   +   +   TG +Q  IS  E G + I+++++   A+  +  +  
Sbjct: 10 LSIGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAKFANAFNVSIVV 69

Query: 80 LL 81
          LL
Sbjct: 70 LL 71


>gi|295837885|ref|ZP_06824818.1| regulatory protein [Streptomyces sp. SPB74]
 gi|197699589|gb|EDY46522.1| regulatory protein [Streptomyces sp. SPB74]
          Length = 284

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R+   N  R +R++  +T + +  R G+ +S IS +E GK+  ++ ++        
Sbjct: 10 ARIALGNRLRALRRQQGITARALAARCGWHESKISRIENGKALPSVQDLTKWTQACG 66


>gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM
          17241]
 gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM
          17241]
          Length = 205

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RKE  ++Q+ +  R G +Q  +++ E   ST   + +  +A  L      L
Sbjct: 7  MFSERLKALRKECGISQRALAQRLGVSQQAVAKWEAASSTPGPNALATIADVLGVSSDYL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|126348551|emb|CAJ90275.1| putative transcriptional regulatory protein [Streptomyces
          ambofaciens ATCC 23877]
          Length = 190

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N +  R E   T + +  R G ++  + ++E  ++  ++  ++ +   L   +  
Sbjct: 9  QSLARNVKRWRGERGFTLETLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGISITT 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|116255118|ref|YP_770952.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|115259766|emb|CAK02857.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 62

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R+  K++Q+E+ +R    +++IS LE    + +I+ +   A  L      LL+
Sbjct: 1  MRALRQARKMSQEELAHRASVDRTYISSLERCVYSPSIEVLDRFAAVLGVEPADLLR 57


>gi|92116675|ref|YP_576404.1| XRE family transcriptional regulator [Nitrobacter hamburgensis
          X14]
 gi|91799569|gb|ABE61944.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis
          X14]
          Length = 483

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q +I    G + S+++ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|55820955|ref|YP_139397.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55822875|ref|YP_141316.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736940|gb|AAV60582.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55738860|gb|AAV62501.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
          Length = 111

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             + +R+   LTQ+E+ +R G +Q+ I  +E G +      +  +A   +T L     P
Sbjct: 50  KIKQLRENINLTQQELADRMGKSQASIGRIENGTTNPTYKTLEEIAAATNTRLVVDFVP 108


>gi|28379424|ref|NP_786316.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|254557562|ref|YP_003063979.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|300768681|ref|ZP_07078578.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|28272263|emb|CAD65174.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|254046489|gb|ACT63282.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|300493773|gb|EFK28944.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
          Length = 223

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +N + IR++ K+TQ +I  +   ++  IS  E G+S  +I  ++ ++   D  + +LL
Sbjct: 3  FSDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|71901612|ref|ZP_00683692.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Ann-1]
 gi|71728622|gb|EAO30773.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Xylella
           fastidiosa Ann-1]
          Length = 406

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGK--STIN 62
           +    +S  +  E M F  N R +RK   +TQ+++    G+ QS I+  E  G      +
Sbjct: 59  KRVRKISRVVNNEGMTFSENLRRLRKSHGMTQEQLALTCGWGQSRIANYESRGSSAREPS 118

Query: 63  IDNMIILAHTLDTPLWKLL 81
            +++ I++  L     +LL
Sbjct: 119 FNDIEIISRVLGVTKAELL 137


>gi|330719160|ref|ZP_08313760.1| transcription regulator [Leuconostoc fallax KCTC 3537]
          Length = 134

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R E  LTQ ++  +   ++  + + E G +  NI+N++ L+  L+  + +L+K
Sbjct: 5  NKIKQLRIENHLTQDQLAQKINVSRQSVLKWEAGTNYPNIENILALSEALNVSIDELIK 63


>gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM
          16795]
 gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM
          16795]
          Length = 125

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N + +R    L+Q ++    G + S I   E G+   +   +  +A   D     L
Sbjct: 1  MFGQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQGRRFPDQTILTKIADFFDVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|134298461|ref|YP_001111957.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051161|gb|ABO49132.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 64

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    ++Q+++    G  +  I  +E GK   ++   I +   L   L ++ 
Sbjct: 5  KMKSARAILDMSQEQLAEAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLDEIF 61


>gi|328478429|gb|EGF48170.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462]
          Length = 140

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             R+ A L+Q+E+ N++G  ++ I+ +E G S  +I+ +  +A+ L   
Sbjct: 87  EARQNAGLSQQELANKSGVPKTTIARIERG-SNTSIETLTKIANALGKQ 134


>gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C300]
 gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C300]
          Length = 152

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK+ K+TQ+E+    G  +    + E G+S I + N   LA     PL  LL
Sbjct: 2  NRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLL 59


>gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK  +LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|296393892|ref|YP_003658776.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296181039|gb|ADG97945.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 178

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R  R+ A+++ +++  R G +  ++S++E G    +   M  +A  L   
Sbjct: 17 VGEYIRTQRELAQVSLRQLAQRAGVSNPYLSQIERGLRNPSAQVMGQIAKALRLS 71


>gi|258625159|ref|ZP_05720075.1| Predicted transcriptional regulator [Vibrio mimicus VM603]
 gi|258582534|gb|EEW07367.1| Predicted transcriptional regulator [Vibrio mimicus VM603]
          Length = 505

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +++
Sbjct: 4  SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P+W L
Sbjct: 64 MLEVIAEVFQKDPIWFL 80


>gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              +  R    LTQKE     G  Q ++S +ETG+   +   +I L+HT   
Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGI 63


>gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
 gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
          Length = 164

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F N  + +R+ + + +KE+  + G      +  E G+    + N+I L+   D P+  
Sbjct: 10 MVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPVDV 69

Query: 80 LLKP 83
          L  P
Sbjct: 70 LCSP 73


>gi|206564610|ref|YP_002235373.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198040650|emb|CAR56636.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 180

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60


>gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis
          subsp. lactis Bl-04]
 gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis
          subsp. lactis DSM 10140]
 gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis
          subsp. lactis AD011]
 gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis
          subsp. lactis Bl-04]
 gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis
          subsp. lactis DSM 10140]
 gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis
          subsp. lactis V9]
          Length = 335

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +N + +R    +TQ+++    G ++  +S+ E+ K+   +D +++L       L  L+
Sbjct: 3  FKDNLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDDLV 62


>gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC
          27755]
 gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC
          27755]
          Length = 260

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+  LTQK++  +   +   +S+ E G S  N+  +I +A  LD  + +LL
Sbjct: 16 FGLFVTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELL 75

Query: 82 K 82
          +
Sbjct: 76 R 76


>gi|197123735|ref|YP_002135686.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173584|gb|ACG74557.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 217

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R+    TQ+++  ++      I  +E+G+     D +I LA  L   +  L
Sbjct: 4  IIGTNVKTLREAMGWTQEDLAAKSKKPVRTIQRVESGEVLPTADTLITLAVALGVEVEDL 63

Query: 81 LK 82
           +
Sbjct: 64 RR 65


>gi|30019989|ref|NP_831620.1| MerR family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|31415741|ref|NP_852481.1| Transcriptional regulator, MerR family [Bacillus phage phBC6A51]
 gi|228968837|ref|ZP_04129799.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|29895534|gb|AAP08821.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC
          14579]
 gi|228790900|gb|EEM38539.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 114

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E+ ++   ++S IS LE   +  ++D++  +A   +  +  LL
Sbjct: 4  FGENLKKFRNSHTLTQAELGDKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSIDALL 63


>gi|23100594|ref|NP_694061.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22778827|dbj|BAC15095.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E  LTQ+++  RTG  +  +  +E G+   ++   I +A  L+  L  L 
Sbjct: 3  NRVKLTRMEKNLTQQQLAARTGITRQTVGLIEKGQYNPSLQLCIKIAKELEVTLNDLF 60


>gi|116669412|ref|YP_830345.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609521|gb|ABK02245.1| transcriptional regulator, XRE family with cupin sensor
          [Arthrobacter sp. FB24]
          Length = 191

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P     I        +  R  R+  +LT +++ + TG  + ++S +E   ++ ++ +
Sbjct: 2  KALPVEPSNIPVA---IGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVAS 58

Query: 66 MIILAHTLDTPLWKLL 81
          ++ L   L   +  L 
Sbjct: 59 LVTLCQVLSISIGDLF 74


>gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
 gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
          Length = 272

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   N    RKE +LTQ+ + ++ G     +S+ ETG++  +I  +  L+  LD  + 
Sbjct: 2  RDMLAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSID 61

Query: 79 KLL 81
          KL 
Sbjct: 62 KLF 64


>gi|290955836|ref|YP_003487018.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260645362|emb|CBG68448.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 210

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 5  KRDEPHLSDAILRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
            +  H  +    E +       R +R+ A LT +      G + + +S LETG+   ++
Sbjct: 3  PSEGTHPPEPPADETLPAVAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGRRQPSL 62

Query: 64 DNMIILAHTLDTPLWKLL 81
            ++ LA    T + +LL
Sbjct: 63 PMLLTLARVYGTTVSELL 80


>gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 96

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  R    ++Q ++ N+   + S++S LE  K    +  +  +A  L  P
Sbjct: 4  GQAIKLCRTRRGISQTDLANKAECSVSYLSMLENNKRDPTLSTLTKIATALKLP 57


>gi|227356569|ref|ZP_03840956.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
 gi|227163325|gb|EEI48252.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
          Length = 113

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +       +        R+   LT  E+  + G +Q   S  E G + +++D +   A  
Sbjct: 18 NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 77

Query: 73 LDTPLWKLLK 82
              L  L +
Sbjct: 78 FGISLSDLFQ 87


>gi|254388551|ref|ZP_05003785.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|197702272|gb|EDY48084.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 202

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 15 LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73


>gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 128

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK   L+Q+ +    G     I + E G + ++   +  +A TL  P+ ++ 
Sbjct: 16 VGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLARIARTLGVPVAEMF 75


>gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 130

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N   ++RK+  L+Q E+ ++   ++  IS+ E G++T  ++ +  L    +  L +
Sbjct: 1  MAFSNKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLTALGDFFEISLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
          Length = 112

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK A L+Q  +    G  +  ISE+E G   ++ D +  LA T D  +  
Sbjct: 1  MQIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAW 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|153815957|ref|ZP_01968625.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC
          27756]
 gi|317500717|ref|ZP_07958935.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331089807|ref|ZP_08338700.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145846776|gb|EDK23694.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC
          27756]
 gi|316897911|gb|EFV19964.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330403504|gb|EGG83062.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 106

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                 + IR    LTQ+ I N      S IS +E  +  +++  ++ + + LDT
Sbjct: 7  EQIGEKLKKIRLSKNLTQEYIANAADVNTSHISNIENNRVKVSLSVLVQICNALDT 62


>gi|91787335|ref|YP_548287.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696560|gb|ABE43389.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 227

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R+ RK   L  +++    G + S +S++E G  +I++  +  L++ L  PL  L+
Sbjct: 42  LGEQVRHRRKALGLPLQQVALGCGISVSLLSQIERGLRSISLRTLAALSNELQLPLETLI 101

Query: 82  K 82
           +
Sbjct: 102 R 102


>gi|41408954|ref|NP_961790.1| hypothetical protein MAP2856c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|118466084|ref|YP_882813.1| DNA-binding protein [Mycobacterium avium 104]
 gi|254776075|ref|ZP_05217591.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291]
 gi|41397313|gb|AAS05173.1| hypothetical protein MAP_2856c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|118167371|gb|ABK68268.1| DNA-binding protein [Mycobacterium avium 104]
          Length = 108

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REVIGDVLREARTTQGRTLREVSDTARVSLGYLSEVERGRKEPSSELLNAICDALDVPLS 65

Query: 79 KLLK 82
           +L 
Sbjct: 66 SVLT 69


>gi|167037350|ref|YP_001664928.1| XRE family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320115765|ref|YP_004185924.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166856184|gb|ABY94592.1| transcriptional regulator, XRE family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319928856|gb|ADV79541.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 321

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +NIRK   L+Q ++  +   ++  + ++E GK     + + +L+H     L +
Sbjct: 9  EAFGEELKNIRKSLGLSQSDVAEQAFISRDTLRKIENGKVIPKHETLELLSHLYKKDLNE 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|75758655|ref|ZP_00738772.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74493826|gb|EAO56925.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 186

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK+A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 8  VGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67


>gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
          Length = 289

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +RK+  LTQ++   +   ++  +S+ E+G+S   ++ ++ +       +  
Sbjct: 1  MSFSENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDS 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM
          7299]
 gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis
          DSM 7299]
          Length = 197

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E        + +RKE K+  KE+    G +   +S LE+G +  +++ +  +A  L  
Sbjct: 1  MTEEFNVGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGV 60

Query: 76 PLWKLLK 82
           +  L  
Sbjct: 61 TIAHLFT 67


>gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. e14]
 gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. e14]
          Length = 509

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|283783004|ref|YP_003373758.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|298253579|ref|ZP_06977369.1| transcriptional regulator [Gardnerella vaginalis 5-1]
 gi|283441892|gb|ADB14358.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|297532346|gb|EFH71234.1| transcriptional regulator [Gardnerella vaginalis 5-1]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IR+E  +TQ+E+ +    ++  +  LE G+   +I     +A   +  + ++ 
Sbjct: 3  NRLEQIRREKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIF 60


>gi|282879967|ref|ZP_06288689.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella timonensis CRIS 5C-B1]
 gi|281306081|gb|EFA98119.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella timonensis CRIS 5C-B1]
          Length = 101

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            RKEAK+TQ E+  + G  +S+IS++E G     +     L ++L 
Sbjct: 45 QARKEAKMTQTELAEKAGTTKSYISKIENGLIEPGVGLFFRLINSLG 91


>gi|255292250|dbj|BAH89373.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255292348|dbj|BAH89468.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255292589|dbj|BAH89700.1| XRE family transcriptional regulator [uncultured bacterium]
 gi|255293091|dbj|BAH90185.1| XRE family transcriptional regulator [uncultured bacterium]
          Length = 168

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R+ R    L+  E+  R G  + ++S+LE  +S  ++  +  L   L   +
Sbjct: 21 EPLRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNM 80

Query: 78 WKLL 81
           +L 
Sbjct: 81 SELF 84


>gi|237748842|ref|ZP_04579322.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380204|gb|EEO30295.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 99

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  R     +Q ++      + S++S +E  +  I +  +  + H L  P+  LL
Sbjct: 4  GNAIKTCRIRRGYSQTKLAELAECSVSYLSLIEHNQRDITLSTLQKICHALHVPIGILL 62


>gi|254512810|ref|ZP_05124876.1| regulator of the anaerobic catobolism of benzoate BzdR
          [Rhodobacteraceae bacterium KLH11]
 gi|221532809|gb|EEE35804.1| regulator of the anaerobic catobolism of benzoate BzdR
          [Rhodobacteraceae bacterium KLH11]
          Length = 306

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 8  EPHLSDAILRERMI------FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
             +      ER I           RN R+   ++++ +   +G +Q ++++LE G   I
Sbjct: 11 STQIDTESEMERAISALMIQVGTRVRNARERKGISRRILSESSGVSQRYLAQLEAGTGNI 70

Query: 62 NIDNMIILAHTLD 74
          +I  +  +AH+LD
Sbjct: 71 SIGLLKRVAHSLD 83


>gi|149914872|ref|ZP_01903401.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b]
 gi|149811060|gb|EDM70897.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b]
          Length = 207

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R++RK    T ++  ++ G A+S +S++E G+ +   + +  LA  L+  +
Sbjct: 23 EPLNLGERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISV 82

Query: 78 WKLLKP 83
           +L  P
Sbjct: 83 PQLFTP 88


>gi|254224740|ref|ZP_04918356.1| hypothetical protein VCV51_A0080 [Vibrio cholerae V51]
 gi|125622803|gb|EAZ51121.1| hypothetical protein VCV51_A0080 [Vibrio cholerae V51]
          Length = 505

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +++
Sbjct: 4  SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P+W L
Sbjct: 64 MLEVIAEVFQKDPIWFL 80


>gi|153002903|ref|YP_001377228.1| helix-turn-helix domain-containing protein [Anaeromyxobacter sp.
          Fw109-5]
 gi|152026476|gb|ABS24244.1| helix-turn-helix domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 80

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M RR      L    L ++  F  N ++ R   KL+Q+ +  +   + S+IS LE  + T
Sbjct: 1  MSRRAYLTRSLHMPALADK--FALNLKSERLRRKLSQEALATKARLSVSYISMLERRQRT 58

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
            ++ +  LA  L      LL+
Sbjct: 59 PPLETLECLAKALAVSPTSLLE 80


>gi|90962809|ref|YP_536724.1| transcriptional regulator [Lactobacillus salivarius UCC118]
 gi|90822003|gb|ABE00641.1| Transcriptional regulator [Lactobacillus salivarius UCC118]
 gi|300215422|gb|ADJ79835.1| Transcriptional regulator [Lactobacillus salivarius CECT 5713]
          Length = 376

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ I     +  R    LT+K + +RTG ++  IS  E GK+     N++ +   LD P
Sbjct: 2  EKRINPEKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFP 60


>gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
 gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL
          1112]
 gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC]
          Length = 169

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK++ L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|269837331|ref|YP_003319559.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269786594|gb|ACZ38737.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 146

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    +  R+EA+ +Q  +    GF  S++S LE+G  T   + ++ LA  L     +
Sbjct: 12 FAELLKRFREEARTSQSRLAESAGFDHSYVSRLESGNRTPTREAVVKLADALGLTPEQ 69


>gi|228949839|ref|ZP_04112049.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228809897|gb|EEM56308.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 63

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            +  R     TQ ++  ++G  Q  IS +E G     +I ++  +A+ L   L +LL
Sbjct: 6  KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIANALGINLEELL 63


>gi|171915434|ref|ZP_02930904.1| probable transcription regulator [Verrucomicrobium spinosum DSM
          4136]
          Length = 203

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RN R +  LT +E+   +G A+  +S++E  + T  +  +  L  TL   L +LL
Sbjct: 6  LAQRIRNARLKRGLTLEEVSESSGLAKGLLSKVENFRVTPTLTTLAKLTETLGIKLSELL 65

Query: 82 K 82
          +
Sbjct: 66 E 66


>gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99]
 gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99]
          Length = 115

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N +N+RK   LTQ+++  RTG ++  I   ET +   +++++ +LA   +T   
Sbjct: 2  KTTVGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|152987569|ref|YP_001349079.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150962727|gb|ABR84752.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 258

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +   + +  R+   L+  E+  R G A+S +S+LE G    +++ +  LA  LD  + +L
Sbjct: 83  LLAASIKRERERLGLSISELAKRAGIAKSTLSQLEAGVGNPSLETLWALAMALDVQVTRL 142

Query: 81  L 81
           +
Sbjct: 143 I 143


>gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP14-BS69]
 gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP19-BS75]
 gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP23-BS72]
 gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
 gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455]
 gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae
          SP-BS293]
 gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae
          SP14-BS292]
 gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae
          BS397]
 gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae
          BS457]
 gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae
          BS458]
 gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP14-BS69]
 gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP19-BS75]
 gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP23-BS72]
 gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031]
 gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200]
 gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455]
 gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae
          SP14-BS292]
 gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae
          SP-BS293]
 gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae
          BS458]
 gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae
          BS457]
 gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae
          BS397]
          Length = 158

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S+++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|116050529|ref|YP_790652.1| hypothetical protein PA14_31160 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|115585750|gb|ABJ11765.1| hypothetical protein PA14_31160 [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 107

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R          + +    F    R +R E  + Q+ + +  G  +S + ++E G+   
Sbjct: 17 PGRPAGATTFDAELAQA---FGAAVRALRTERGIAQESLAHLAGIERSHMGKVERGEHMP 73

Query: 62 NIDNMIILAHTLDTPLWKLL 81
           +  +  +A  L+     L+
Sbjct: 74 TLALIFKIAGALECSTAVLM 93


>gi|83942534|ref|ZP_00954995.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36]
 gi|83846627|gb|EAP84503.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36]
          Length = 229

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +RK    T ++  N+ G A+S +S++E G+ +   + +  LA  L+  + +L 
Sbjct: 49  LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLF 108

Query: 82  KP 83
            P
Sbjct: 109 TP 110


>gi|332880985|ref|ZP_08448655.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332681159|gb|EGJ54086.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 117

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + IR+ +  TQ++I    G  +S  S  E G   +  D +  L++      + 
Sbjct: 6  QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILEKLSNLFGCEPFI 65

Query: 80 LLK 82
          L +
Sbjct: 66 LFE 68


>gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis
          DSM 12885]
 gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter
          marianensis DSM 12885]
          Length = 244

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            + +   N  R  R+ A L+ KE+  R   + S +S++E G    ++     LA  L  
Sbjct: 2  EPDPVAVGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGVKHPSLAVAATLAQILGR 61

Query: 76 PL 77
           L
Sbjct: 62 SL 63


>gi|283458481|ref|YP_003363108.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
 gi|283134523|dbj|BAI65288.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
          Length = 135

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 36/79 (45%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R+         ++  R       R++R+    T +E+  R   +  ++SE+E G+   + 
Sbjct: 22  RQAAPVVEEAKVVPLRQAIGEVLRDVRQRQGRTLREVSQRARVSLGYLSEVERGQKEASS 81

Query: 64  DNMIILAHTLDTPLWKLLK 82
           + +  +   LD P+ ++L+
Sbjct: 82  ELLAWICQALDIPMSQMLR 100


>gi|258676996|ref|YP_003204972.1| hypothetical protein CLI_0799 [Clostridium botulinum F str.
          Langeland]
 gi|256258834|gb|ACU64823.1| conserved hypothetical protein [Clostridium botulinum F str.
          Langeland]
 gi|295318164|gb|ADF98541.1| conserved hypothetical protein [Clostridium botulinum F str.
          230613]
          Length = 182

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R +  L+  ++   +G ++  +S++E G+S   I+ +  +A+ L     KL
Sbjct: 6  IISANLKKLRTDRNLSLGQLSQLSGVSKVMLSQIEKGESNSTINTIWKIANGLQVTYTKL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|256370256|ref|YP_003107767.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|256000419|gb|ACU48818.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
          Length = 642

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK   LT   +   +  +++ IS LE G     ++ +  LA+ L     +L+
Sbjct: 2  NLACLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELV 58


>gi|296138750|ref|YP_003645993.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296026884|gb|ADG77654.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 191

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+E  +T   +   TG + S +S LE G     ++ ++ LA T   PL +L+
Sbjct: 12 VGPRLRAIRQERDITLTAVAEATGISVSTLSRLEGGTRKPTLELLLPLARTYGLPLDELV 71


>gi|187935228|ref|YP_001886792.1| hypothetical protein CLL_A2604 [Clostridium botulinum B str.
          Eklund 17B]
 gi|187723381|gb|ACD24602.1| conserved domain protein [Clostridium botulinum B str. Eklund
          17B]
          Length = 64

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q ++    G  +  I  +E GK   ++   I +   L   L  + 
Sbjct: 5  KLKSARAALDLSQGQLAEIVGVTRQTIGMIEAGKYNPSLQLCIAICKALGKTLNDIF 61


>gi|254284584|ref|ZP_04959551.1| hypothetical protein A33_A0144 [Vibrio cholerae AM-19226]
 gi|150425369|gb|EDN17145.1| hypothetical protein A33_A0144 [Vibrio cholerae AM-19226]
          Length = 505

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +++
Sbjct: 4  SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P+W L
Sbjct: 64 MLEVIAEVFQKDPIWFL 80


>gi|120435300|ref|YP_860986.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
 gi|117577450|emb|CAL65919.1| HTH_3 family transcriptional regulator protein [Gramella forsetii
          KT0803]
          Length = 99

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH-TLDTPL 77
           +  RK A+LTQ+++  RTG  +S+IS +E G S I I     L    L   L
Sbjct: 42 LKEARKSAQLTQEQLAERTGTKKSYISRIERGLSDIQITTYQKLIEIGLGKEL 94


>gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 191

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R +  +T  E+   TG ++S +S LE G+   +++ ++ +A     PL KL+
Sbjct: 13 GPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKLV 71


>gi|50122571|ref|YP_051738.1| putative DNA-binding protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49613097|emb|CAG76548.1| putative DNA-binding protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 184

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   L+  E+  R G A+S +S+LE+G    +++ +  LA  LD  + +L+
Sbjct: 14 IRRERERLNLSVTELAKRAGLAKSTLSQLESGIGNPSLETLWALAMALDVQVSQLI 69


>gi|83953755|ref|ZP_00962476.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841700|gb|EAP80869.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 236

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +RK    T ++  N+ G A+S +S++E G+ +   + +  LA  L+  + +L 
Sbjct: 56  LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLF 115

Query: 82  KP 83
            P
Sbjct: 116 TP 117


>gi|75759233|ref|ZP_00739334.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74493296|gb|EAO56411.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +++NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L
Sbjct: 4  LYLNNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSL 63

Query: 81 L 81
           
Sbjct: 64 F 64


>gi|331085146|ref|ZP_08334232.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330407929|gb|EGG87419.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 106

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R IR    LTQ+ I N      S IS +E  +  +++  ++ + + LDT
Sbjct: 10 GEKLRTIRLSKNLTQEYIANAVDINTSHISNIENNRVKVSLSTLVQICNALDT 62


>gi|302552520|ref|ZP_07304862.1| helix-turn-helix domain-containing protein [Streptomyces
          viridochromogenes DSM 40736]
 gi|302470138|gb|EFL33231.1| helix-turn-helix domain-containing protein [Streptomyces
          viridochromogenes DSM 40736]
          Length = 415

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMI 67
          P L+ A+  E   +   FR  RK   L+Q ++    G  Q  +S++E G+  + +++   
Sbjct: 12 PVLASAVTDED--WGQVFRTYRKLTGLSQTKLGELVGLVQPDVSDIERGRRRVTSLEVRG 69

Query: 68 ILAHTLDTPLW 78
           +A  L  P +
Sbjct: 70 RIATGLGIPPF 80


>gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1]
 gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  N+ +  R  A  +QKE+ ++TG  +  +S +E G    ++   + L H L+  L  
Sbjct: 1  MLTANHVKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDT 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 115

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQ ++  + GF++  I   E G    + + ++ +A   +     LL
Sbjct: 7  FKERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQGSREPDQETLLKIAKFFNVSSDYLL 66


>gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3]
 gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3]
          Length = 115

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N + +RK   LTQ+++ +RTG ++  I   ET +   +++++ +LA   +T   
Sbjct: 2  KTTVGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|225026220|ref|ZP_03715412.1| hypothetical protein EUBHAL_00461 [Eubacterium hallii DSM 3353]
 gi|238925886|ref|YP_002939404.1| hypothetical protein EUBREC_3544 [Eubacterium rectale ATCC 33656]
 gi|224956471|gb|EEG37680.1| hypothetical protein EUBHAL_00461 [Eubacterium hallii DSM 3353]
 gi|238877563|gb|ACR77270.1| Hypothetical protein EUBREC_3544 [Eubacterium rectale ATCC 33656]
 gi|291528305|emb|CBK93891.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
 gi|291545569|emb|CBL18677.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
 gi|291551051|emb|CBL27313.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 66

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  ++IR+E  L Q ++    G     I  +E G+   +++  I LAH L  P+  + +
Sbjct: 5  NTLKDIREERNLIQADLAEAIGSCSQTIGRIERGERNPSLEIAIRLAHYLKVPVEDIFQ 63


>gi|167766468|ref|ZP_02438521.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1]
 gi|167711877|gb|EDS22456.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1]
          Length = 123

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R  RK+  L+Q+ +  + G + + +S +E G++ I+I+  + L   L    
Sbjct: 16 ELIQLGERVRQKRKDCHLSQETLAEKVGISVNTVSRIEGGQAAISIEIFVKLVEVLGADA 75

Query: 78 WKLL 81
           +LL
Sbjct: 76 NELL 79


>gi|134098702|ref|YP_001104363.1| Cro/CI family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|291003611|ref|ZP_06561584.1| Cro/CI family transcriptional regulator [Saccharopolyspora
          erythraea NRRL 2338]
 gi|133911325|emb|CAM01438.1| transcriptional regulator, Cro/CI family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 194

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N R  R  A L+ +E+  R   ++  +  LE  +   N+  ++ LA TL   +  L+
Sbjct: 11 VAHNVRAARVRAGLSLEELGRRAQVSKGALVALENAQGNPNLATLVRLADTLGVSVSALM 70

Query: 82 K 82
          +
Sbjct: 71 Q 71


>gi|15964694|ref|NP_385047.1| hypothetical protein SMc00089 [Sinorhizobium meliloti 1021]
 gi|307322166|ref|ZP_07601538.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83]
 gi|15073872|emb|CAC45513.1| Hypothetical protein SMc00089 [Sinorhizobium meliloti 1021]
 gi|306892187|gb|EFN23001.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83]
          Length = 118

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 6   RDEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           RDE   ++ +   R++   N  +  R    +  +E+  +   +  ++SE+E+GK   ++ 
Sbjct: 43  RDELVPAEVV--NRLLAGENAVKVWRSHRGMAARELAKKARISAPYLSEIESGKKDGSLS 100

Query: 65  NMIILAHTLDTPLWKLLK 82
            M  +A  L   L  L +
Sbjct: 101 TMKKIAEALSVDLDDLAQ 118


>gi|322372760|ref|ZP_08047296.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C150]
 gi|321277802|gb|EFX54871.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C150]
          Length = 113

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +  R +A LTQ E+  + G AQ+  +  E G      D +  LA  L+T    L
Sbjct: 1  MLKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDDTVEKLAEILNTSFEIL 60


>gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 130

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     + +RK   LTQ+ +        + I   E G+ + +++ +  +A  L     
Sbjct: 25 KKIIGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEFSPSVEQIAKMADVLGVSPA 84

Query: 79 KLL 81
          +++
Sbjct: 85 EII 87


>gi|294084784|ref|YP_003551542.1| transcriptional regulator [Candidatus Puniceispirillum marinum
          IMCC1322]
 gi|292664357|gb|ADE39458.1| transcriptional regulator, putative [Candidatus Puniceispirillum
          marinum IMCC1322]
          Length = 468

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 19 RMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R  F     R +R+++  TQ ++  + G + ++++ LE  + ++++  ++ L+   + 
Sbjct: 2  RKTFIGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQRSLSVQVLMALSDEYNV 59


>gi|288870406|ref|ZP_06113975.2| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288867355|gb|EFC99653.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 100

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           LTQ+E+  + G A  +  ++E G   ++ID M+ +A  L+  L  L+
Sbjct: 4  GLTQEELAEKIGRAYKYCQDIERGTCGMSIDTMLSIAACLNISLDYLI 51


>gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074]
 gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074]
 gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074]
          Length = 509

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|52787331|ref|YP_093160.1| YvaO [Bacillus licheniformis ATCC 14580]
 gi|163119661|ref|YP_080738.2| posible transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|319647810|ref|ZP_08002028.1| YvaO protein [Bacillus sp. BT1B_CT2]
 gi|52349833|gb|AAU42467.1| YvaO [Bacillus licheniformis ATCC 14580]
 gi|145903171|gb|AAU25100.2| posible transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|317390151|gb|EFV70960.1| YvaO protein [Bacillus sp. BT1B_CT2]
          Length = 133

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F ++ R +R+  KLT  ++   +G + + IS +E GK        +  LA  L  P  +L
Sbjct: 4  FGHHLRQLRERKKLTVNQLAMYSGVSSAGISRIENGKRGVPKPATIRKLADALKVPYEEL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|83313343|ref|YP_423607.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82948184|dbj|BAE53048.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 476

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R+  KL+Q  +      + S+++++E  +  + +  ++ +A  LD  L
Sbjct: 5  KKLFLGYKLRRLREGKKLSQAALAVLLEVSPSYLNQIENNQRPLTVPVLLRIAKVLDVDL 64

Query: 78 WKLLK 82
            L++
Sbjct: 65 ATLVE 69


>gi|312887011|ref|ZP_07746615.1| helix-turn-helix domain protein [Mucilaginibacter paludis DSM
          18603]
 gi|311300323|gb|EFQ77388.1| helix-turn-helix domain protein [Mucilaginibacter paludis DSM
          18603]
          Length = 77

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R   KLT +++  R     S I ++E+GK  I +  +I LA  L+    +
Sbjct: 11 KQLGGRIKVLRLAKKLTFRKMALRCNVDFSDIQKIESGKVNITVITLIELAKALEVEPME 70

Query: 80 LL 81
          LL
Sbjct: 71 LL 72


>gi|269966652|ref|ZP_06180731.1| transcriptional regulator, HTH_3 family [Vibrio alginolyticus 40B]
 gi|269828719|gb|EEZ82974.1| transcriptional regulator, HTH_3 family [Vibrio alginolyticus 40B]
          Length = 232

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 49  EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 108

Query: 78  WKLLKP 83
            +L +P
Sbjct: 109 PQLFEP 114


>gi|257898126|ref|ZP_05677779.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257836038|gb|EEV61112.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 370

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +    N  N+RKE  +TQ+ +    G  ++ +S+ ETG+S  ++  +  LA   D  +
Sbjct: 2  EELSLSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 67

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+E+ +  G ++  I+ +E G     I   + + H L   L +L 
Sbjct: 5  RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELF 61


>gi|255280221|ref|ZP_05344776.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
 gi|255269312|gb|EET62517.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
          Length = 330

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI      ++RK+   +Q+E+  +   ++  +S+ E G+S  ++D ++ L+      L  
Sbjct: 1  MILAEKIMDLRKKNGWSQEELAQQLRVSRQSVSKWEGGQSVPDLDKLLALSQIFGVTLDY 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787]
 gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787]
          Length = 198

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+  K+TQKE   R G ++  I + E+G+  + ID +  +A+ L+ P  +LL
Sbjct: 18 GKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQELL 76


>gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680]
 gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680]
          Length = 206

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRKE   T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 26 VGPRLRRIRKERGATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELV 85


>gi|328676885|gb|AEB27755.1| Predicted transcriptional regulator [Francisella cf. novicida
          Fx1]
          Length = 75

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  RK+  LTQ ++   +G    +I E+E GKST +I  +I LA +L 
Sbjct: 15 IRKARKKQGLTQADLAGISGLGIRFIGEVENGKSTAHIGKVIQLASSLG 63


>gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 191

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R   + T   +   TG + S +S LE+G+   N++ ++ LA     PL +L+
Sbjct: 12 VGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQRRPNLELLLPLAKAHQVPLDELV 71


>gi|308123712|gb|ADO14693.1| C.OkrAI [Oceanobacter kriegii]
          Length = 78

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    L+Q+++    G  +++IS LE G+   ++ +++ L+ +L+TP  ++L
Sbjct: 7  FGRILKQLRTAKGLSQEQLALSCGLDRTFISMLERGQRQPSLSSILSLSKSLETPAHEML 66

Query: 82 K 82
          K
Sbjct: 67 K 67


>gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 65

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ  +    G ++  I+ +E G+    I+    +   L   L +L 
Sbjct: 6  KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILGKTLDELF 62


>gi|229082960|ref|ZP_04215381.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2]
 gi|228700360|gb|EEL52925.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2]
          Length = 144

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R+    +Q+++  + G  +  + + E+ KS  +IDN+I+L+   +  + +L+
Sbjct: 6  LGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTIDELI 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|229100652|ref|ZP_04231502.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29]
 gi|228682832|gb|EEL36860.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29]
          Length = 142

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R+    +Q+++  + G  +  + + E+ KS  +IDN+I+L+   +  + +L+
Sbjct: 6  LGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTIDELI 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|295839211|ref|ZP_06826144.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197695663|gb|EDY42596.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 77

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L +R    +  R  R EA +TQ+ +  RTG  +  +  +E G  +  +D+++++A  L 
Sbjct: 10 VLDQRRAIGDRIRTARLEAAITQETLAERTGLDRKTVVRVEGGTHSTLLDHLLLIARALG 69

Query: 75 TPLWKLLK 82
            L  L++
Sbjct: 70 RLLADLVR 77


>gi|148975472|ref|ZP_01812343.1| transcriptional regulator, HTH_3 family protein [Vibrionales
          bacterium SWAT-3]
 gi|145964900|gb|EDK30151.1| transcriptional regulator, HTH_3 family protein [Vibrionales
          bacterium SWAT-3]
          Length = 207

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061]
 gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila]
 gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061]
          Length = 91

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M+     +  RKE  +T  E+ ++ G +   +S  E G + I++++++ ++  L+TP
Sbjct: 5  MLVGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTP 61


>gi|90422889|ref|YP_531259.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisB18]
 gi|90104903|gb|ABD86940.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisB18]
          Length = 480

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q ++    G + S+I+ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|317126820|ref|YP_004093102.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315471768|gb|ADU28371.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 68

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I+    R  RK    TQ+E   +   + S + E+E G    + + ++ +   L+  L
Sbjct: 2  EDFIWGRRIRAFRKLKGFTQEEFARQLSISVSVLGEIERGSRVPSDELLVSVTEVLNVTL 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|257886939|ref|ZP_05666592.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257822993|gb|EEV49925.1| transcriptional regulator [Enterococcus faecium 1,141,733]
          Length = 370

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +    N  N+RKE  +TQ+ +    G  ++ +S+ ETG+S  ++  +  LA   D  +
Sbjct: 2  EELSLSKNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|302518956|ref|ZP_07271298.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302427851|gb|EFK99666.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 287

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLWK 79
          F    R +R+ + LTQ E+  +   + S+I++ E G+   N D    L   L T    W+
Sbjct: 17 FGGELRRLREASGLTQAELAAQVYVSASYIAQFEAGRRKPNEDVARRLDDALKTGGSFWR 76

Query: 80 LL 81
          ++
Sbjct: 77 IV 78


>gi|302528605|ref|ZP_07280947.1| predicted protein [Streptomyces sp. AA4]
 gi|302437500|gb|EFL09316.1| predicted protein [Streptomyces sp. AA4]
          Length = 197

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R    +T +E+  R G +  ++S  E G ++I++ ++  +A  L+    +LL
Sbjct: 10 VGAEIKRVRSSLGMTLRELAERCGLSPGFLSLAERGVNSISLTSLFAIAGALEVDAVELL 69


>gi|229192878|ref|ZP_04319836.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876]
 gi|228590717|gb|EEK48578.1| hypothetical protein bcere0002_45290 [Bacillus cereus ATCC 10876]
          Length = 209

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDT 75
          ++      R +RKE KL+ ++    TG +  ++S+LETG     +I+ +  LA  LD 
Sbjct: 3  KIELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLETGSNKKPSIEILEKLALGLDI 60


>gi|15601711|ref|NP_233342.1| hypothetical protein VCA0958 [Vibrio cholerae O1 biovar eltor
          str. N16961]
 gi|121586667|ref|ZP_01676451.1| hypothetical protein VC274080_A0999 [Vibrio cholerae 2740-80]
 gi|121726421|ref|ZP_01679695.1| hypothetical protein VCV52_A0910 [Vibrio cholerae V52]
 gi|147672118|ref|YP_001215122.1| hypothetical protein VC0395_0281 [Vibrio cholerae O395]
 gi|153801392|ref|ZP_01955978.1| hypothetical protein A51_C0942 [Vibrio cholerae MZO-3]
 gi|153818327|ref|ZP_01970994.1| hypothetical protein A5C_A1168 [Vibrio cholerae NCTC 8457]
 gi|153821038|ref|ZP_01973705.1| hypothetical protein A5E_A0970 [Vibrio cholerae B33]
 gi|153827802|ref|ZP_01980469.1| hypothetical protein A59_A0011 [Vibrio cholerae 623-39]
 gi|227812524|ref|YP_002812534.1| hypothetical protein VCM66_A0918 [Vibrio cholerae M66-2]
 gi|229505902|ref|ZP_04395411.1| hypothetical protein VCF_001112 [Vibrio cholerae BX 330286]
 gi|229510244|ref|ZP_04399724.1| hypothetical protein VCE_001648 [Vibrio cholerae B33]
 gi|229514370|ref|ZP_04403831.1| hypothetical protein VCB_002020 [Vibrio cholerae TMA 21]
 gi|229517626|ref|ZP_04407071.1| hypothetical protein VCC_001649 [Vibrio cholerae RC9]
 gi|229522483|ref|ZP_04411899.1| hypothetical protein VIF_003043 [Vibrio cholerae TM 11079-80]
 gi|229526492|ref|ZP_04415896.1| hypothetical protein VCA_000620 [Vibrio cholerae bv. albensis
          VL426]
 gi|229528143|ref|ZP_04417534.1| hypothetical protein VCG_001223 [Vibrio cholerae 12129(1)]
 gi|229605434|ref|YP_002876138.1| hypothetical protein VCD_000376 [Vibrio cholerae MJ-1236]
 gi|254850124|ref|ZP_05239474.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297579993|ref|ZP_06941920.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298499732|ref|ZP_07009538.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9658396|gb|AAF96854.1| hypothetical protein VC_A0958 [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121549095|gb|EAX59130.1| hypothetical protein VC274080_A0999 [Vibrio cholerae 2740-80]
 gi|121631169|gb|EAX63544.1| hypothetical protein VCV52_A0910 [Vibrio cholerae V52]
 gi|124123058|gb|EAY41801.1| hypothetical protein A51_C0942 [Vibrio cholerae MZO-3]
 gi|126511140|gb|EAZ73734.1| hypothetical protein A5C_A1168 [Vibrio cholerae NCTC 8457]
 gi|126521412|gb|EAZ78635.1| hypothetical protein A5E_A0970 [Vibrio cholerae B33]
 gi|146314501|gb|ABQ19041.1| hypothetical protein VC0395_0281 [Vibrio cholerae O395]
 gi|148876647|gb|EDL74782.1| hypothetical protein A59_A0011 [Vibrio cholerae 623-39]
 gi|227011666|gb|ACP07877.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227015605|gb|ACP11814.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229334505|gb|EEN99990.1| hypothetical protein VCG_001223 [Vibrio cholerae 12129(1)]
 gi|229336650|gb|EEO01668.1| hypothetical protein VCA_000620 [Vibrio cholerae bv. albensis
          VL426]
 gi|229340468|gb|EEO05474.1| hypothetical protein VIF_003043 [Vibrio cholerae TM 11079-80]
 gi|229345662|gb|EEO10635.1| hypothetical protein VCC_001649 [Vibrio cholerae RC9]
 gi|229348350|gb|EEO13308.1| hypothetical protein VCB_002020 [Vibrio cholerae TMA 21]
 gi|229352689|gb|EEO17629.1| hypothetical protein VCE_001648 [Vibrio cholerae B33]
 gi|229356253|gb|EEO21171.1| hypothetical protein VCF_001112 [Vibrio cholerae BX 330286]
 gi|229371920|gb|ACQ62342.1| hypothetical protein VCD_000376 [Vibrio cholerae MJ-1236]
 gi|254845829|gb|EET24243.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297535639|gb|EFH74473.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297541713|gb|EFH77764.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 505

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +++
Sbjct: 4  SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P+W L
Sbjct: 64 MLEVIAEVFQKDPIWFL 80


>gi|328464746|gb|EGF36071.1| spermidine/putrescine transport operon transcriptional regulator
          [Lactobacillus rhamnosus MTCC 5462]
          Length = 50

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 27/44 (61%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           +  R++R    LTQ+E+  RT  ++ +IS++E  +S+ +++  
Sbjct: 4  GSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETF 47


>gi|301630833|ref|XP_002944521.1| PREDICTED: uncharacterized HTH-type transcriptional regulator
          ydcN-like [Xenopus (Silurana) tropicalis]
          Length = 212

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P + +D     D  + +      N + +R +  L+   +    G +++ ++++E+G+S 
Sbjct: 13 LPSKPKDCNSGDDDAIGQ--CVAQNLQRLRSKRYLSLDALARNCGVSRAMLAQIESGRSV 70

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
           +I  +  +A  L   +   L+
Sbjct: 71 PSIKVLCKIAKGLKVSVAAFLE 92


>gi|258622468|ref|ZP_05717490.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262164497|ref|ZP_06032235.1| predicted transcriptional regulator [Vibrio mimicus VM223]
 gi|258585168|gb|EEW09895.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262026877|gb|EEY45544.1| predicted transcriptional regulator [Vibrio mimicus VM223]
          Length = 505

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +++
Sbjct: 4  SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P+W L
Sbjct: 64 MLEVIAEVFQKDPIWFL 80


>gi|229136572|ref|ZP_04265260.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
 gi|228646884|gb|EEL03031.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
          Length = 65

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R E  LTQ+E+ +     +  IS +E+ K   ++   I +A TLD  L KL 
Sbjct: 4  SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDESLDKLF 61


>gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 163

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F      +R+   L+Q  +  +    +  I+  E G    +I+ +  LA   D  +  
Sbjct: 3  MTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSIDF 62

Query: 80 LL 81
          L+
Sbjct: 63 LV 64


>gi|197337412|ref|YP_002158337.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314664|gb|ACH64113.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 218

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++IR +  LT +E   RTG A+S +S++E  + +     +  LA  LD  + ++ 
Sbjct: 39  LGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIF 98

Query: 82  KP 83
           +P
Sbjct: 99  EP 100


>gi|258517093|ref|YP_003193315.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780798|gb|ACV64692.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 61

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
           R +R +  +TQ+++  + G ++ ++SELE G K   +   +  +A   D  + +L
Sbjct: 4  IRKLRIKYGVTQEKLAQKVGISRIYLSELENGRKKNPSTTLLEKIAKNFDVRVSEL 59


>gi|222033322|emb|CAP76062.1| hypothetical protein LF82_280 [Escherichia coli LF82]
          Length = 381

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                R+   LT  E+      ++  IS  E G  + + D +  +A  L  P
Sbjct: 18 RRLEEAREAKGLTMAELARVLNISRQAISSFEKGLKSPSADTLSAIAKVLGFP 70


>gi|167035167|ref|YP_001670398.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861655|gb|ABZ00063.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 81

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L+Q+ + + +   ++ + ++E G+  +   N++ +A  L      +L
Sbjct: 17 LGTAIRARRKLLMLSQEALADLSEIDRAHMGKIERGERNVTFLNVVKIATALGCKPSDVL 76


>gi|150389363|ref|YP_001319412.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149949225|gb|ABR47753.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 226

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
          F    + IRK   +TQ+E+  R G    +IS++E   +   + D +I LA  L+  + +L
Sbjct: 4  FGKYLKEIRKGR-MTQRELAKRIGVGYPYISKIENNVEPPPSDDVLIKLAQALEVDVDEL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 117

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
              L +R+        +RK  + TQ ++  R G     IS +E G +T ++  +  ++H
Sbjct: 7  PGKPLAQRL--GTQIATLRKTKEWTQADLAERIGVEPETISRVERGATTPSLQTLEKISH 64

Query: 72 TLDTPLWKLL 81
           L   + +LL
Sbjct: 65 CLRVRIGELL 74


>gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes J139]
 gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Propionibacterium acnes J139]
          Length = 508

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R+ RK+  +TQ ++      +QS I  +E+G   ++++ +  +   L++P+
Sbjct: 9  VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRITEALESPI 64


>gi|167588649|ref|ZP_02381037.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ubonensis Bu]
          Length = 180

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLF 60


>gi|83310829|ref|YP_421093.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 gi|82945670|dbj|BAE50534.1| Predicted transcriptional regulator [Magnetospirillum magneticum
           AMB-1]
          Length = 164

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       R  R +  LTQ+++  R       IS +E G  T  +D +  +A  LDTP+
Sbjct: 49  KQQIGLKVRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTPM 107


>gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 165

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +R E  L+Q+++    G +   +S  E G++  +I  +I LA      + +LL
Sbjct: 10 LKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRTMPDISIIIELADYYGIDIRELL 65


>gi|228902129|ref|ZP_04066293.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222]
 gi|228857555|gb|EEN02051.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222]
          Length = 262

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++    +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
 gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516]
          Length = 327

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+  LTQ+E+  + G ++  +S+ E G S  +I+ +I L+         
Sbjct: 1  MILSDKIILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSIPDINKIIQLSDVFGVKTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family
          [Rhizobium etli CFN 42]
          Length = 190

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 1  MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 60

Query: 80 LLK 82
            +
Sbjct: 61 FFR 63


>gi|17228887|ref|NP_485435.1| hypothetical protein alr1392 [Nostoc sp. PCC 7120]
 gi|17130739|dbj|BAB73349.1| alr1392 [Nostoc sp. PCC 7120]
          Length = 290

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F N  ++ R +   +Q ++   +  +Q  IS LE+G++  + D ++ LA  LD PL
Sbjct: 11 FGNLLKHWRNQRSFSQLDLAVASEVSQRHISFLESGRAKPSRDMILQLATVLDVPL 66


>gi|14591505|ref|NP_143586.1| hypothetical protein PH1748 [Pyrococcus horikoshii OT3]
 gi|3258179|dbj|BAA30862.1| 192aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 192

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           + + IRK   +TQ+E+  + G  Q++I++LE GK    +     +   L
Sbjct: 11 RDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60


>gi|75762759|ref|ZP_00742588.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74489747|gb|EAO53134.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 136

 Score = 50.8 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ +  +    +  +S+ E G+     + +I++    +  L  LL
Sbjct: 3  FGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|332523977|ref|ZP_08400229.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332315241|gb|EGJ28226.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 194

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+A  +Q+++  +   ++  IS  E  KS  +I ++I LA+  +  L +L+
Sbjct: 3  LGKKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFNLSLDQLV 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|238916178|ref|YP_002929695.1| hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC
          27750]
 gi|238871538|gb|ACR71248.1| Hypothetical protein EUBELI_00212 [Eubacterium eligens ATCC
          27750]
          Length = 98

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          DAI  E M  +    + R    +TQKE+  RTG  Q+ IS+LE G    +++ +  LA  
Sbjct: 22 DAIQPE-MDVIRAIVDARTSQNMTQKELAERTGINQADISKLENGTRNPSVNLLKRLADA 80


>gi|115379785|ref|ZP_01466856.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|310820720|ref|YP_003953078.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115363203|gb|EAU62367.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393792|gb|ADO71251.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 116

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 23 VNNFRNIR--KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +R  +  + TQ+E+  R   + S++S +E G+   +++ +  LA  L   L +L
Sbjct: 9  GQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVAHVETLAALAGALGVSLGEL 68

Query: 81 L 81
           
Sbjct: 69 F 69


>gi|119714341|ref|YP_921306.1| helix-turn-helix domain-containing protein [Nocardioides sp.
          JS614]
 gi|119535002|gb|ABL79619.1| helix-turn-helix domain protein [Nocardioides sp. JS614]
          Length = 210

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +R +  L+   + +++G A+  +S LE G     ++ +  L+  L  P+ +L+
Sbjct: 17 RAILRLRTQRGLSLSALADQSGVAKGTLSNLERGVGNPTLETIFALSRGLGVPIGELV 74


>gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316253236|gb|EFV12637.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 486

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R +RD P  S + L  +       R +R E  L+Q  +      + S+++++E     I 
Sbjct: 2  RVRRDFPRSSYSDLVAKTYVGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPIT 61

Query: 63 IDNMIILAHTLDT 75
          +  ++ L+  L  
Sbjct: 62 MPLLLRLSEKLGV 74


>gi|325680396|ref|ZP_08159949.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324107919|gb|EGC02182.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 76

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLWKLLK 82
          RK   LTQ+++        ++I  +E      T+++D +  +A  L+   +KLLK
Sbjct: 20 RKLRGLTQEQLAEMIDKNLAFIGAVEAPNVNRTVSLDTLFDIADALNVEPYKLLK 74


>gi|225378006|ref|ZP_03755227.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans
          DSM 16841]
 gi|225210159|gb|EEG92513.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans
          DSM 16841]
          Length = 120

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R+   +  R  R +   +Q E+  R   A  + S++E G   ++ + M+ ++  LD  L
Sbjct: 9  DRLAVGDRIRKKRVQLGFSQDEVAERIDRAPKYCSDIERGTCGMSTETMLAISECLDMSL 68

Query: 78 WKLL 81
            ++
Sbjct: 69 DYMM 72


>gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 132

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++RKE  +TQ+E+ ++       +S+ E G S  +I  +  LA  LD    KLL
Sbjct: 6  GRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLSYPDISLIPKLADILDIDPNKLL 64


>gi|59713884|ref|YP_206659.1| transcriptional regulator [Vibrio fischeri ES114]
 gi|59482132|gb|AAW87771.1| transcriptional regulator [Vibrio fischeri ES114]
          Length = 218

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++IR +  LT +E   RTG A+S +S++E  + +     +  LA  LD  + ++ 
Sbjct: 39  LGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIF 98

Query: 82  KP 83
           +P
Sbjct: 99  EP 100


>gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium
          cryptum JF-5]
 gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 203

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   LTQ+E+  R G     IS +E G+ + +I ++  +   +   L +  
Sbjct: 25 VGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSLAEFF 84

Query: 82 K 82
           
Sbjct: 85 T 85


>gi|319938757|ref|ZP_08013121.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811807|gb|EFW08073.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
          Length = 135

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+ + LTQ+ +  +   ++  IS  ET K   +I  ++ L+      L +LLK
Sbjct: 4  GRKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDELLK 63


>gi|295093485|emb|CBK82576.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 68

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++E++   N+ + +R  A L+Q ++    G +++ IS +ETG+        +IL   LD 
Sbjct: 1  MKEQLHLKNHLKEVRTAANLSQTQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
          Length = 118

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              + +RK+   TQ+++    G  Q  +S  E GK  +++D ++ LA    
Sbjct: 10 GKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLYG 61


>gi|213161102|ref|ZP_03346812.1| hypothetical protein Salmoneentericaenterica_14098 [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428345|ref|ZP_03361095.1| hypothetical protein SentesTyphi_24034 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
          Length = 265

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  NN + +R +  +TQ E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 1  MLQNNIKQLRTQLSITQHELAFMVGTSQQQIQRIETGKVAAKLSLAQAICNALDKPL 57


>gi|254465630|ref|ZP_05079041.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
 gi|206686538|gb|EDZ47020.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
          Length = 207

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T +   N+ G A+S +S++E G+ +   + +  LA  L   + +L 
Sbjct: 27 LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLQISVPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|153212196|ref|ZP_01947991.1| hypothetical protein A55_A0826 [Vibrio cholerae 1587]
 gi|124116748|gb|EAY35568.1| hypothetical protein A55_A0826 [Vibrio cholerae 1587]
          Length = 505

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   +++
Sbjct: 4  SKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVE 63

Query: 65 NMIILAHTLDT-PLWKL 80
           + ++A      P+W L
Sbjct: 64 MLEVIAEVFQKDPIWFL 80


>gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium
          IMCC3088]
 gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium
          IMCC3088]
          Length = 222

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +RKE   T  ++  RTG +   +S+LE GK+ +N  ++  LA  L   +  L  
Sbjct: 25 GRRLRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTDLNFSSVNKLATGLGLAVTDLTN 84

Query: 83 P 83
          P
Sbjct: 85 P 85


>gi|183602320|ref|ZP_02963687.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219682676|ref|YP_002469059.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis
          AD011]
 gi|241190254|ref|YP_002967648.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis Bl-04]
 gi|241195660|ref|YP_002969215.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis DSM 10140]
 gi|183218534|gb|EDT89178.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|219620326|gb|ACL28483.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis AD011]
 gi|240248646|gb|ACS45586.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis Bl-04]
 gi|240250214|gb|ACS47153.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis DSM 10140]
 gi|289177969|gb|ADC85215.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis
          BB-12]
 gi|295793241|gb|ADG32776.1| putative transcriptional regulator [Bifidobacterium animalis
          subsp. lactis V9]
          Length = 90

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             ER+         R+EA+LTQ+++  R+G ++  I+ +E GK   ++  +  LA  + 
Sbjct: 23 AEIERLNAAVAVSRAREEARLTQEQLAERSGVSRVTINRIERGKLNPSMKTLSRLARAMG 82

Query: 75 TP 76
            
Sbjct: 83 KQ 84


>gi|168214024|ref|ZP_02639649.1| HTH-type transcriptional regulator HipB [Clostridium perfringens
          CPE str. F4969]
 gi|170714468|gb|EDT26650.1| HTH-type transcriptional regulator HipB [Clostridium perfringens
          CPE str. F4969]
          Length = 64

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            +  R    LTQKE+ N+ G +   +S+ E G    I +  M+ LA  LDT + +L 
Sbjct: 2  KIKLKRISKGLTQKELANKVGISHVTLSKFENGSYENITLRTMLKLAAALDTTVHELF 59


>gi|67078040|ref|YP_245660.1| transcriptional regulator [Bacillus cereus E33L]
 gi|66970346|gb|AAY60322.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 145

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R+    +Q+++  + G  +  + + E+ KS  +IDN+I+L+   +  + +L+
Sbjct: 6  LGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|56476736|ref|YP_158325.1| hypothetical protein ebB68 [Aromatoleum aromaticum EbN1]
 gi|56312779|emb|CAI07424.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 97

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 5  KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +R  P  S     E  + F    R  R E  + Q+E+ +     +S + ++E G+    +
Sbjct: 7  QRGRPVGSTTYEPEPALAFGQAVRAARMEQGMAQEELASLAEIERSHMGKIERGEHMPTL 66

Query: 64 DNMIILAHTLDTPLWKLL 81
            ++ +A  L+     L+
Sbjct: 67 ALILRIAAALNRSAADLI 84


>gi|28900659|ref|NP_800314.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365534|ref|ZP_05778071.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          K5030]
 gi|260877597|ref|ZP_05889952.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          AN-5034]
 gi|260895390|ref|ZP_05903886.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|28809039|dbj|BAC62147.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          RIMD 2210633]
 gi|308085253|gb|EFO34948.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466]
 gi|308090582|gb|EFO40277.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          AN-5034]
 gi|308114316|gb|EFO51856.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          K5030]
          Length = 207

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P     +      I   ++      ++IR +  +T +E   RTG A+S +S++E  + + 
Sbjct: 10 PSMTLAKEQNDQNIEPLKL--GQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 68 TFQAMQKLALGLQIDMPQLFEP 89


>gi|324323883|gb|ADY24926.1| putative transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 125

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N RN+R +  LT KE+    G + + IS  E G    N+D + ++A      +  L
Sbjct: 5  IFGKNLRNLRTQKGLTLKELGQELGVSGNTISGWELGNKEPNMDMIKVIAEFFTVSVDYL 64

Query: 81 LK 82
          L+
Sbjct: 65 LQ 66


>gi|288916300|ref|ZP_06410679.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288352279|gb|EFC86477.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 393

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
                 +R+   +TQ+E+  R+G +   I  LE G+ +   +  +  LA  LD     L
Sbjct: 4  VGTRLAQVRRRRNMTQEELAERSGVSADVIRRLEQGRRSGAQLRTLGALARALDVRTSDL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|251781701|ref|YP_002996003.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|242390330|dbj|BAH80789.1| transcriptional regulator, Cro/CI family [Streptococcus
          dysgalactiae subsp. equisimilis GGS_124]
 gi|322411061|gb|EFY01969.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|323126498|gb|ADX23795.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 68

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+ + +  G ++  I+ +E G     I+  I +   LD  L  L 
Sbjct: 5  KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61


>gi|255505869|ref|ZP_05348580.3| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255265478|gb|EET58683.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 137

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+  L Q E+  +   +  ++S +E   S  +I+ ++ LA  LDT   + L
Sbjct: 38 GRRIARRRKQLGLKQAEVEEKADLSYKYLSNIERSISIPSIEVIMRLAVALDTTPDEFL 96


>gi|170697860|ref|ZP_02888945.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|171317970|ref|ZP_02907144.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|172064453|ref|YP_001812104.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|170137247|gb|EDT05490.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|171096870|gb|EDT41744.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171996970|gb|ACB67888.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 180

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLF 60


>gi|94995138|ref|YP_603236.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS10750]
 gi|94548646|gb|ABF38692.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS10750]
          Length = 68

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+ + +  G ++  I+ +E G     I+  I +   LD  L  L 
Sbjct: 5  KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61


>gi|71910858|ref|YP_282408.1| transcriptional regulator [Streptococcus pyogenes MGAS5005]
 gi|71853640|gb|AAZ51663.1| transcriptional regulator [Streptococcus pyogenes MGAS5005]
          Length = 66

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77
           + +R+E K++Q+E+ N++G +++ IS +ET KS T+ +  +  LA  LD P+
Sbjct: 6  IQRLREEKKMSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPI 58


>gi|71904298|ref|YP_281101.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS6180]
 gi|71803393|gb|AAX72746.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS6180]
          Length = 68

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+ + +  G ++  I+ +E G     I+  I +   LD  L  L 
Sbjct: 5  KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61


>gi|317504406|ref|ZP_07962388.1| XRE family transcriptional regulator [Prevotella salivae DSM
          15606]
 gi|315664478|gb|EFV04163.1| XRE family transcriptional regulator [Prevotella salivae DSM
          15606]
          Length = 103

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    +  RK  KLTQ+++    G  + +IS++E G S + +   + +A+ L 
Sbjct: 43 YAELLKTQRKMQKLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALG 95


>gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum
          CFBP2957]
 gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum
          CFBP2957]
          Length = 209

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +DA + ER+      R +R     T   +  R G ++S IS +E G ++     +  LA
Sbjct: 11 DTDAGVNERI--ARRVRELRATRGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLA 68

Query: 71 HTLDTPLWKLL 81
            L   L  L 
Sbjct: 69 AGLGVSLASLF 79


>gi|294794380|ref|ZP_06759516.1| DNA-binding protein [Veillonella sp. 3_1_44]
 gi|294454710|gb|EFG23083.1| DNA-binding protein [Veillonella sp. 3_1_44]
          Length = 127

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWK 79
            +    IR    ++Q+E+    G ++S++S+LE G   S ++++ +  +A      + +
Sbjct: 28 LGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQINVGQ 87

Query: 80 LLK 82
          L++
Sbjct: 88 LVR 90


>gi|302555539|ref|ZP_07307881.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
 gi|302473157|gb|EFL36250.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R++A LT +      G + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 41  VAPRLRALRRQASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYSTTVSELL 100


>gi|254420279|ref|ZP_05034003.1| conserved domain protein [Brevundimonas sp. BAL3]
 gi|196186456|gb|EDX81432.1| conserved domain protein [Brevundimonas sp. BAL3]
          Length = 371

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R     + +++  R    + +I +LETG  + + + M  LA  L      L
Sbjct: 9  GEQLRLARLAHGYSLEDVGERISATRQFIHQLETGSRSPSDEVMEALADVLGVTPAFL 66


>gi|217977134|ref|YP_002361281.1| transcriptional regulator, XRE family [Methylocella silvestris
          BL2]
 gi|217502510|gb|ACK49919.1| transcriptional regulator, XRE family [Methylocella silvestris
          BL2]
          Length = 205

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK    +  E+  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 23 LGKTVQRLRKAYNFSLSELSEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 82

Query: 82 K 82
          +
Sbjct: 83 Q 83


>gi|168998508|ref|YP_001687776.1| putative regulatory protein [Staphylococcus aureus]
          Length = 113

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|163746251|ref|ZP_02153609.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45]
 gi|161380136|gb|EDQ04547.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45]
          Length = 207

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T ++   + G A+S +S++E G  +   D +  LA  L+  + +L 
Sbjct: 27 LGARVRELRKARNWTLEQAARQAGLARSTLSKIENGLMSPTYDALKKLAVGLEITVPQLF 86

Query: 82 KP 83
           P
Sbjct: 87 TP 88


>gi|21230716|ref|NP_636633.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|188992439|ref|YP_001904449.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. B100]
 gi|21112308|gb|AAM40557.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|167734199|emb|CAP52407.1| transcriptional regulator [Xanthomonas campestris pv. campestris]
          Length = 460

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +  +    R       + +R+   LTQ E+  R G + S+++++E  +  + +     L 
Sbjct: 1  MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK 60

Query: 71 HTLD 74
            L 
Sbjct: 61 TALG 64


>gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus]
 gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus]
 gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus]
 gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus]
 gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus]
 gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus]
 gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus]
 gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus]
 gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp.
          aureus JKD6159]
 gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus]
          Length = 113

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti
          1021]
 gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti]
 gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021]
 gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 182

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R   KL+Q+E+  R G   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|323693267|ref|ZP_08107485.1| xre family Toxin-antitoxin system [Clostridium symbiosum
          WAL-14673]
 gi|323502750|gb|EGB18594.1| xre family Toxin-antitoxin system [Clostridium symbiosum
          WAL-14673]
          Length = 115

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E KLT +E+  ++G +  +I E+E   +  +++ +  L   L         
Sbjct: 12 GFRLKQARTEQKLTYEELAEKSGVSSRYIKEIENHGNVPSLEKLGQLIRALHISADPFFY 71

Query: 83 P 83
          P
Sbjct: 72 P 72


>gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium
          resistens DSM 45100]
          Length = 497

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 26/54 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +RK+  L+Q ++  + G + S+++++E     + +  +  L  T   
Sbjct: 8  VGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHNSRPLTLAVLDKLTATFGV 61


>gi|296450740|ref|ZP_06892493.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296260584|gb|EFH07426.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
          Length = 76

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           ++IR E  L Q+++   TG     I  +E G+   +++  I LAH L+  + ++ K
Sbjct: 7  LKDIRIERNLIQEDLAEATGSCSRTIGRIERGERNPSLEMAIRLAHYLNMSVEEIFK 63


>gi|284993364|ref|YP_003411919.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284066610|gb|ADB77548.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 275

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP         +      R  F    R  R   +L+Q ++   +  +   IS LETG+S 
Sbjct: 1  MPGGGAARSVRTVTATATRSTFGPLLRQWRTRRRLSQLDLAVESDVSARHISFLETGRSQ 60

Query: 61 INIDNMIILAHTLDTPLWK 79
           + + ++ LA  LD PL +
Sbjct: 61 PSREMVLRLATQLDVPLRE 79


>gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium
          prausnitzii A2-165]
 gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium
          prausnitzii A2-165]
          Length = 209

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R  RK+  ++Q E+ +  G  Q  + + E+GKS+ +   +  LA  LDT    
Sbjct: 1  MSFPELLRQCRKQKHMSQAELASLLGVTQQAVGKWESGKSSPDPTTVAKLAEILDTTADY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257063263|ref|YP_003142935.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256790916|gb|ACV21586.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 68

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++  N  + IR E KL+Q ++    G +++ IS +ETG+        ++L   LD   
Sbjct: 3  DKLVLKNRLKEIRAEQKLSQAQLAAMVGVSRNTISSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
            + 
Sbjct: 63 EDIF 66


>gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131]
 gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131]
          Length = 112

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R IRKE  ++  E+  +   +Q  +S  E G + I+ID +  L+  LD P  +++K
Sbjct: 26 IRKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDCPFERVIK 82


>gi|221197606|ref|ZP_03570653.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M]
 gi|221204279|ref|ZP_03577297.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2]
 gi|221176445|gb|EEE08874.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2]
 gi|221184160|gb|EEE16560.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M]
          Length = 203

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|125623537|ref|YP_001032020.1| hypothetical protein llmg_0681 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124492345|emb|CAL97283.1| putative membrane protein [Lactococcus lactis subsp. cremoris
          MG1363]
 gi|300070296|gb|ADJ59696.1| hypothetical protein LLNZ_03535 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 161

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +RK+   TQ+ +  +       I  +E G + +++D +  +++ L  P+ +L +
Sbjct: 5  RVAELRKKRGWTQEVLAEKANITVRTIQRIENG-TDVSLDTLASISNALLVPVSELFE 61


>gi|161521857|ref|YP_001585284.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189351982|ref|YP_001947609.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160345907|gb|ABX18992.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
 gi|189336004|dbj|BAG45073.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 203

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|115359639|ref|YP_776777.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115284927|gb|ABI90443.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ambifaria AMMD]
          Length = 180

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   + + TG  +S++S++E G S  +I   + L+  L+  + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLF 60


>gi|152988924|ref|YP_001351041.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150964082|gb|ABR86107.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 199

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR     P  +D    E        R +RK   LT   +  ++     +IS+LE   + 
Sbjct: 1  MPR--PSTPDATDTPRSETHFLGTRIRGLRKRRGLTLAALAAQSELTAGYISQLERNLAY 58

Query: 61 INIDNMIILAHTLDT 75
           +I  +  +A +L  
Sbjct: 59 PSIPALFNIARSLGV 73


>gi|313247825|ref|YP_004032987.1| DNA-binding protein [Enterococcus faecalis]
 gi|312836992|dbj|BAJ34878.1| DNA-binding protein [Enterococcus faecalis]
          Length = 204

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LTQ+++  +   +++ IS+ E+GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELL 62


>gi|258516790|ref|YP_003193012.1| helix-turn-helix domain-containing protein [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780495|gb|ACV64389.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM
          771]
          Length = 66

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  R IR+   +TQ E+ N TG+ QS IS++E+G   +    +   A  L   + +L
Sbjct: 1  MIGNKIRIIRESKHMTQDELGNLTGYKQSQISKIESGSREVKSRELGKFAAALGVKITEL 60

Query: 81 LK 82
          L+
Sbjct: 61 LE 62


>gi|269836649|ref|YP_003318877.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269785912|gb|ACZ38055.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 125

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R +R     + +++   +G +  ++SE+E G+   +   +  LA  LD  L 
Sbjct: 9  REAVGATIRGLRLTRGWSLRDLSQASGISVPYLSEIERGRKDPSGAVLAQLAEALDLSLG 68

Query: 79 KLL 81
           LL
Sbjct: 69 ALL 71


>gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 197

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R + ++T   +   TG ++S +S LETG+   +++ ++ LA   + PL  
Sbjct: 13 EQVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQRKASLELLLPLAMAYNVPLDD 72

Query: 80 LL 81
          L+
Sbjct: 73 LV 74


>gi|227518256|ref|ZP_03948305.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227554727|ref|ZP_03984774.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|256963254|ref|ZP_05567425.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257088722|ref|ZP_05583083.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|307270406|ref|ZP_07551709.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307287459|ref|ZP_07567511.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|312905012|ref|ZP_07764144.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|227074295|gb|EEI12258.1| transcriptional regulator [Enterococcus faecalis TX0104]
 gi|227176142|gb|EEI57114.1| transcriptional regulator [Enterococcus faecalis HH22]
 gi|256953750|gb|EEU70382.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256997534|gb|EEU84054.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|306501505|gb|EFM70804.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306513253|gb|EFM81882.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|310631673|gb|EFQ14956.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 204

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LTQ+++  +   +++ IS+ E+GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELL 62


>gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
 gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mitsuokella multacida DSM 20544]
          Length = 189

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F +  R +RK++ LTQ E   +TG  +S +   E+GK   N   +  +A         
Sbjct: 1  MVFADRLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVARFYHVSTDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|160915619|ref|ZP_02077827.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991]
 gi|331082745|ref|ZP_08331868.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|158432095|gb|EDP10384.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991]
 gi|330400364|gb|EGG80006.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 204

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LTQ+++  +   +++ IS+ E+GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELL 62


>gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
          Length = 227

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R E +L+  E+  + G +   +S++E G S++ +  +  LA  LD     L+
Sbjct: 44  VGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVKVIWPLAAALDIEPSALI 103


>gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 101

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              + +RKE  LTQ+++  + G A + I+ +ETG   I+ID  I L
Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIEL 85


>gi|315038300|ref|YP_004031868.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112]
 gi|312276433|gb|ADQ59073.1| putative transcriptional regulator [Lactobacillus amylovorus GRL
          1112]
          Length = 112

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                N R+   +TQ E+ +++G  ++ ++++E G   ++ D +  +A  L+     LL
Sbjct: 7  LAQKIINYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLL 66


>gi|261406993|ref|YP_003243234.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261283456|gb|ACX65427.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 186

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RKE  ++  ++   TG ++  +  +E G++   +  +  ++  +  PL+ L K
Sbjct: 18 LKKYRKEKNMSLDDLAEITGVSKLTLGNIERGETNPTLAIIWKISKGISLPLFALFK 74


>gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii L2-6]
          Length = 101

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              + +RKE  LTQ+++  + G A + I+ +ETG   I+ID  I L
Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIEL 85


>gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2]
 gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2]
          Length = 70

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R+IR+E  L+Q E+    G ++  I+ +ET K   +++  + +AH     + +L K
Sbjct: 5  NRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYNPSLELALRIAHYFKLSVEELFK 63


>gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella
          piezotolerans WP3]
 gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3]
          Length = 182

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RKE  L+Q+E+  R G   S IS +E    + ++ ++  +   L   L +  
Sbjct: 4  GASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVEFF 62


>gi|167628192|ref|YP_001678691.1| helix-turn-helix domain protein [Heliobacterium modesticaldum
          Ice1]
 gi|167590932|gb|ABZ82680.1| helix-turn-helix domain protein [Heliobacterium modesticaldum
          Ice1]
          Length = 193

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F    R +RK  KL+Q E+    G ++  IS  E    T  ID + ++A   +    
Sbjct: 2  RECFSERLRGLRKGRKLSQNELGAALGLSRGSISYYEKQSRTAPIDVLYVVADYFNVSAD 61

Query: 79 KLL 81
           LL
Sbjct: 62 FLL 64


>gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 174

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTL 73
          LR ++   +  + +R E  LTQKE+  R   G   ++I ++E G+   ++  ++ ++  L
Sbjct: 25 LRLKLEIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEAL 84

Query: 74 DTPLWKLLK 82
            P+    +
Sbjct: 85 SVPVASFFQ 93


>gi|46206109|ref|ZP_00210190.1| COG1396: Predicted transcriptional regulators [Magnetospirillum
          magnetotacticum MS-1]
          Length = 191

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R +R     T   +  R   + S +S +ETG   I +D ++ +A  L T L +L++P
Sbjct: 13 QRIRGLRLARGWTLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVEP 72


>gi|330718468|ref|ZP_08313068.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC
          3537]
          Length = 260

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + + +R E  LTQ+E+      ++  +S  ETGK+  +++ +  L+   +    +++
Sbjct: 3  FEQDIKRMRLEKGLTQQELAESIHVSRQTVSTWETGKNYPSLEVLRSLSLLFNVSFEQII 62


>gi|325923488|ref|ZP_08185143.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
 gi|325546055|gb|EGD17254.1| putative transcriptional regulator [Xanthomonas gardneri ATCC
          19865]
          Length = 96

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + N  G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRTERGIAQETLANLAGIERSHMGKIERGEHAPTLAVIFKIAGALECSTAVLM 84


>gi|257897454|ref|ZP_05677107.1| predicted protein [Enterococcus faecium Com12]
 gi|293377213|ref|ZP_06623419.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecium PC4.1]
 gi|257834019|gb|EEV60440.1| predicted protein [Enterococcus faecium Com12]
 gi|292644162|gb|EFF62266.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecium PC4.1]
          Length = 82

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M+      + R+   ++Q E+    GF Q+ IS +ETGK   N+  +I L+  L   L
Sbjct: 20 MVLGARIAHAREGLGISQGELGKLAGFNQTTISLIETGKRLPNLKTLIRLSKILKKSL 77


>gi|229493241|ref|ZP_04387033.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
          SK121]
 gi|229319972|gb|EEN85801.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
          SK121]
          Length = 268

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M   +  +  R+  +LTQ  +    G +   +S +ETG+S  + D ++ L+  LD PL
Sbjct: 4  ETMDVGSELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63

Query: 78 WK 79
           +
Sbjct: 64 RQ 65


>gi|221210520|ref|ZP_03583500.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia multivorans CGD1]
 gi|221169476|gb|EEE01943.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia multivorans CGD1]
          Length = 203

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|149187584|ref|ZP_01865881.1| predicted transcriptional regulator [Vibrio shilonii AK1]
 gi|148838464|gb|EDL55404.1| predicted transcriptional regulator [Vibrio shilonii AK1]
          Length = 206

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  LT +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 23 EPLKLGERIKDIRAKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLHIDM 82

Query: 78 WKLLKP 83
           +L +P
Sbjct: 83 PQLFEP 88


>gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae
          subsp. equisimilis ATCC 12394]
          Length = 113

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +AKLTQ +I  + G +Q    + E G      DN++ L++  +  +  LL
Sbjct: 3  FTERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKKPTQDNLVKLSNIFNVSVDSLL 62


>gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family
          protein [Phascolarctobacterium sp. YIT 12067]
 gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family
          protein [Phascolarctobacterium sp. YIT 12067]
          Length = 104

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R  AK++Q E+    G  Q+ +S +E G++ + I N+I L   L+ P+   
Sbjct: 12 LIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLIKLHQILECPISSF 71

Query: 81 L 81
           
Sbjct: 72 F 72


>gi|281334739|gb|ADA61823.1| hypothetical protein SAP047A_004 [Staphylococcus aureus]
          Length = 113

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEAIKEQRELKGWSQEELANILKVSRQNVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens
          DSM 30120]
 gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens
          DSM 30120]
          Length = 99

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           N  RN R    L++KE+ +    +Q  +S  E G ST++I N++IL + L+ P  +
Sbjct: 8  GNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIPFDE 64


>gi|210623409|ref|ZP_03293788.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM
          13275]
 gi|210153604|gb|EEA84610.1| hypothetical protein CLOHIR_01738 [Clostridium hiranonis DSM
          13275]
          Length = 77

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             ++  +I  N  +  R E  L+Q E+    G +++ IS +ETG+        +IL   
Sbjct: 2  KKNMKNDLILKNRLKVARAEKSLSQSELAEMIGVSRNTISSIETGQFNPTAKLALILCIA 61

Query: 73 LDTPLWKLL 81
          LD    +L 
Sbjct: 62 LDKKFEELF 70


>gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 198

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R    +T   +   TG + S +S LE+G+   N++ ++ LA     PL +L+
Sbjct: 12 VGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQRRPNLELLLPLAQAHQVPLDELV 71


>gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991]
 gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991]
          Length = 124

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE  LTQ+E+ + +  +   +   E G    + + +      L+  L  L+
Sbjct: 7  LGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDSLM 66


>gi|313884783|ref|ZP_07818537.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619982|gb|EFR31417.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 188

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +N + IR E  ++Q+++       +  IS+ E G +  + + + IL    +     +
Sbjct: 1  MFKDNLKRIRLEHDMSQEDLAQVMAVTRQSISKYEKGTAEPSFEKLAILVDYFNLSYDDI 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|302385374|ref|YP_003821196.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302196002|gb|ADL03573.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 184

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R + K++       +G ++S + ++E G+    I  +  +A+    P  +L
Sbjct: 7  IVAENIKRLRTQRKMSLDAAAKASGVSKSMLGQIERGEVNPTIAMVWKIAYGFKVPFTEL 66

Query: 81 L 81
          +
Sbjct: 67 V 67


>gi|241759657|ref|ZP_04757758.1| Helix-turn-helix [Neisseria flavescens SK114]
 gi|241320029|gb|EER56410.1| Helix-turn-helix [Neisseria flavescens SK114]
          Length = 95

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R +   T+ ++   +G + S+++ LE GK   N+  +  +   L  P   L+
Sbjct: 4  GRAIKLCRNQKGFTKTKLAENSGLSVSYLTLLEQGKRDPNLSTLEKICLALQIPSTVLM 62


>gi|118467518|ref|YP_885321.1| XRE family transcriptional regulator protein [Mycobacterium
          smegmatis str. MC2 155]
 gi|118168805|gb|ABK69701.1| transcriptional regulator, XRE family protein [Mycobacterium
          smegmatis str. MC2 155]
          Length = 142

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R  R+ A+++ +++  + G +  ++S++E G    + D +  +A  L      L
Sbjct: 19 GSFIRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRKPSADVLNQIAKALRVSAEVL 76


>gi|66769288|ref|YP_244050.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|66574620|gb|AAY50030.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
          Length = 460

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +  +    R       + +R+   LTQ E+  R G + S+++++E  +  + +     L 
Sbjct: 1  MPQSSALLRHQLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLK 60

Query: 71 HTLD 74
            L 
Sbjct: 61 TALG 64


>gi|16126237|ref|NP_420801.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
          CB15]
 gi|221235010|ref|YP_002517446.1| transcriptional regulator [Caulobacter crescentus NA1000]
 gi|13423463|gb|AAK23969.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
          CB15]
 gi|220964182|gb|ACL95538.1| transcriptional regulator [Caulobacter crescentus NA1000]
          Length = 199

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +R+E  L+       TG +++ IS +E G+++   + +  L +     + +LL
Sbjct: 17 RLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGRLCNAYGLTMSRLL 73


>gi|297184582|gb|ADI20694.1| predicted transcriptional regulators [uncultured alpha
          proteobacterium EF100_94H03]
          Length = 204

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R  P          +   N  R +R E   +  E   +T  ++S + ++E  + +   D 
Sbjct: 11 RASPADEVPQPP--LDLGNRIRELRSEHGWSLDEAAAQTSLSRSSLFKIEKNRMSPTFDA 68

Query: 66 MIILAHTLDTPLWKLL 81
          +  LA      + +L+
Sbjct: 69 LRKLAEGFGLAMAELV 84


>gi|296446681|ref|ZP_06888621.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gi|296255802|gb|EFH02889.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 75

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +R   K TQ+ +  +   +  ++  +E    +  +  +  +A        +
Sbjct: 5  EVIATNVRRLRNARKWTQEALAEKAQLSSRYVGAIERANVSARVKVIGRIADAFGVEPAE 64

Query: 80 LLK 82
          LLK
Sbjct: 65 LLK 67


>gi|270290740|ref|ZP_06196964.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4]
 gi|270280800|gb|EFA26634.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4]
          Length = 108

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ RK    TQ ++ NR   ++  +S  E G S  +++ ++ + + LDT    LL
Sbjct: 13 FNTRLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKICNILDTSADYLL 72


>gi|317054347|ref|YP_004118372.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316952342|gb|ADU71816.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 200

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  RKE KL+  E+  R G ++  + E+E G +  +I  +  +A  L   +  ++
Sbjct: 22 VSSRVRTQRKEQKLSLDELARRAGVSKGMLVEVEKGDANPSIAILCKIAAALGLSVADMV 81


>gi|251779839|ref|ZP_04822759.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243084154|gb|EES50044.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 167

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
           N  + +R+   +++ E+  +   + ++I+ LE G K+  +++ +  ++  LD PL KL+
Sbjct: 5  GNKIKTLRESKNISKSELARKIEVSPAYITMLENGTKTNPSLEILNKISFALDIPLDKLV 64


>gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri
          DSM 1131]
 gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri
          DSM 1131]
          Length = 102

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           I  +  + +R+E  LT  E+      +Q   S  E G + I+ID+++++A  L   
Sbjct: 9  KIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVS 65


>gi|124007647|ref|ZP_01692351.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
 gi|123986945|gb|EAY26710.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134]
          Length = 275

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F  N R IR+E  K+TQ  +    G ++S +S  E G++   I  +I +A      + 
Sbjct: 1  MFFSKNLRYIREEKYKITQGALAEILGVSRSALSAYEDGRAEPRILLLIKIAQYFAVSID 60

Query: 79 KLL 81
          +++
Sbjct: 61 EMV 63


>gi|146313164|ref|YP_001178238.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145320040|gb|ABP62187.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 200

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+ RK+ KL+  E+  R   ++  + E+E G +  +I  +  LA  L   +  ++
Sbjct: 22 VASRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81


>gi|118497388|ref|YP_898438.1| transcriptional regulator [Francisella tularensis subsp. novicida
          U112]
 gi|195536079|ref|ZP_03079086.1| helix-turn-helix protein, putative [Francisella tularensis subsp.
          novicida FTE]
 gi|208779183|ref|ZP_03246529.1| helix-turn-helix DNA binding protein [Francisella novicida FTG]
 gi|118423294|gb|ABK89684.1| transcriptional regulator [Francisella novicida U112]
 gi|194372556|gb|EDX27267.1| helix-turn-helix protein, putative [Francisella tularensis subsp.
          novicida FTE]
 gi|208744983|gb|EDZ91281.1| helix-turn-helix DNA binding protein [Francisella novicida FTG]
          Length = 70

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  RK+  LTQ ++   +G    +I E+E GKST +I  +I LA +L 
Sbjct: 15 IRKARKKQGLTQADLAGISGLGTRFIGEVENGKSTAHIGKVIQLASSLG 63


>gi|186475018|ref|YP_001856488.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184191477|gb|ACC69442.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 135

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            +     I       IR  A + Q ++    G   S  S +E G+S+++ D + + A  
Sbjct: 5  KTVTTYGAILGAVLGQIRSAAGMKQSDLAEAVGVGPSTWSRIEKGESSLSTDQLKLAADA 64

Query: 73 LDTPLWKLLK 82
          L  P  ++L+
Sbjct: 65 LKVPPSRILE 74


>gi|88802552|ref|ZP_01118079.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P]
 gi|88781410|gb|EAR12588.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P]
          Length = 297

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +IF       RK   LTQ E+  +       I  +E+G+ T     + I++  L+   
Sbjct: 2  DTLIFGKELIKARKARGLTQAEVAEKCNVTIRTIQRIESGEVTPRSSTIKIISKFLEVDF 61

Query: 78 WKL 80
          +++
Sbjct: 62 FEI 64


>gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075]
 gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075]
          Length = 252

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          R+     FR IRK+  L+Q+E  +  G  Q+  S +E G+ +  ++ +  L
Sbjct: 11 RVEIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSGL 61


>gi|296161883|ref|ZP_06844684.1| helix-turn-helix domain protein [Burkholderia sp. Ch1-1]
 gi|295887902|gb|EFG67719.1| helix-turn-helix domain protein [Burkholderia sp. Ch1-1]
          Length = 79

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  KLTQ  +  R     + IS +E  K+   ID +I +A  L   L +
Sbjct: 8  KAVGKEIRARRKVKKLTQAGLAMRAAVHPNTISLIERAKTIAGIDALIDIADALGVSLSQ 67

Query: 80 LLK 82
          L+K
Sbjct: 68 LIK 70


>gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7]
 gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7]
          Length = 297

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +M   +N R +RK+   +Q+++  R   ++  +S+ E+      ++++IIL+   +  + 
Sbjct: 6  KMSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTID 65

Query: 79 KLLK 82
           LLK
Sbjct: 66 DLLK 69


>gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
          Length = 115

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     N +N RK   LTQ+++ +RTG ++  I   E  +   +++++ +LA   +T + 
Sbjct: 2  KTTVGQNIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSID 61

Query: 79 KLL 81
          +LL
Sbjct: 62 RLL 64


>gi|269798723|ref|YP_003312623.1| XRE family transcriptional regulator [Veillonella parvula DSM
          2008]
 gi|269095352|gb|ACZ25343.1| transcriptional regulator, XRE family [Veillonella parvula DSM
          2008]
          Length = 127

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWK 79
            +    IR    ++Q+E+    G ++S++S+LE G   S ++++ +  +A      + +
Sbjct: 28 LGHKIAIIRVSLNMSQQELARHIGISRSYLSKLECGTGISGMSLEILFKIAQAFQINVGQ 87

Query: 80 LLK 82
          L++
Sbjct: 88 LVR 90


>gi|183598790|ref|ZP_02960283.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC
          25827]
 gi|188020996|gb|EDU59036.1| hypothetical protein PROSTU_02220 [Providencia stuartii ATCC
          25827]
          Length = 186

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +        R+++ L+  E+  + G A+S +S+LE G    +I+ +  +   LD P  +
Sbjct: 9  ELIAKALVRERQKSGLSLSELSRQAGIAKSTLSQLEAGNGNPSIETLWAICVALDVPFSR 68

Query: 80 LLK 82
          L++
Sbjct: 69 LIE 71


>gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC
          25827]
 gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC
          25827]
          Length = 76

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +  RKE  LT +E+    G +Q  IS  E+G + INID +  L+     P+   
Sbjct: 13 IVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLSQLSELFKVPIQVF 72

Query: 81 L 81
          L
Sbjct: 73 L 73


>gi|111021088|ref|YP_704060.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110820618|gb|ABG95902.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 207

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   T  ++   TG + S +S LE+G+    ++ M++LA     PL +L+
Sbjct: 18 VGPRLKALRQQRGATLAQLSESTGISVSTLSRLESGQRKPTLELMLLLARAHQLPLDELV 77


>gi|312866305|ref|ZP_07726523.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311097999|gb|EFQ56225.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 68

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER+I  N  +  RKE KL+Q  +    G +++ IS +ETG+ +       ++   LD   
Sbjct: 3  ERLILKNRLKEARKEEKLSQGALAKLVGVSRNTISSIETGQYSPTAKLAPVICIALDKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564]
 gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564]
          Length = 113

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+A+LTQ ++  + G +Q   +  E G      +N++ +A  L+  +  L+
Sbjct: 3  FSERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKKPTQENLVKIAQILNVSVDYLV 62


>gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 191

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R+E   T  ++   TG + S +S LE G+    ++ ++ LA      L +
Sbjct: 9  EAVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQRRPTLELLLPLARAHQVQLDE 68

Query: 80 LL 81
          L+
Sbjct: 69 LV 70


>gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM
          15053]
 gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM
          15053]
          Length = 323

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +M F  N + +R++   TQ++I  +   ++  +S+ E+G S   +D ++ L+      + 
Sbjct: 6  KMGFAENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGSFPEMDKLLQLSEMFQCGMD 65

Query: 79 KLLK 82
           L++
Sbjct: 66 VLVQ 69


>gi|254386728|ref|ZP_05002021.1| regulatory protein [Streptomyces sp. Mg1]
 gi|194345566|gb|EDX26532.1| regulatory protein [Streptomyces sp. Mg1]
          Length = 197

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+ A LT +    R   + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 4  VAPQLRDLRRRAGLTLEAAATRARLSPAHLSRLETGRRQPSLPLLLGLARTYGTTVSELL 63


>gi|182625421|ref|ZP_02953194.1| conserved domain protein [Clostridium perfringens D str. JGS1721]
 gi|177909418|gb|EDT71870.1| conserved domain protein [Clostridium perfringens D str. JGS1721]
          Length = 64

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
          N +  R    LTQKE+ ++ G +   +S +E G    I +  M+ LA  LDT + +L 
Sbjct: 2  NIKLKRISMGLTQKELAHKVGISHVTLSRIEKGAYENITLRTMLKLAEALDTTVQELF 59


>gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804]
 gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii]
          Length = 136

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTL 73
           +R    F    R  R     TQKE+ + +G  QS I   E+G+ T      +I LA  L
Sbjct: 3  TIRRMETFGQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRTEPTSAALIKLAQAL 62

Query: 74 DTPLWKL 80
          D     L
Sbjct: 63 DVTPEWL 69


>gi|160947469|ref|ZP_02094636.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270]
 gi|158446603|gb|EDP23598.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270]
          Length = 200

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R   K TQKE     G  Q  +S  E GK+   ID +I +A      L  
Sbjct: 4  KTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCKVSLDW 63

Query: 80 L 80
          L
Sbjct: 64 L 64


>gi|119963185|ref|YP_949637.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119950044|gb|ABM08955.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 206

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R+    T  ++    G ++  I  +E G +  ++  ++ ++  L   L  L++
Sbjct: 19 GARVRQERQNRGWTLDQLAEAAGVSRRMIINMEQGAANPSVGTLLRISDALGVGLPALVE 78


>gi|307701893|ref|ZP_07638902.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261]
 gi|307616708|gb|EFN95896.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261]
          Length = 158

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ E     G +++ +S  E G S ++ + + I+    +     +
Sbjct: 1  MIGKNIKSLRKTHDLTQPEFAQIIGISRNSLSRYENGTSPVSTELIDIICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|295700360|ref|YP_003608253.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439573|gb|ADG18742.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 195

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R     +   +  R+  ++S IS +E G+S+     +  LA  L+ PL  L
Sbjct: 6  LIARRVKALRDAQNWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVPLASL 65

Query: 81 LK 82
           +
Sbjct: 66 FE 67


>gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
          Length = 133

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRK-EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F    + +RK EA LTQ+ +  + G A++ ++  E GK   +++ +  +A         
Sbjct: 14 MFAERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDY 73

Query: 80 LL 81
          LL
Sbjct: 74 LL 75


>gi|226526965|ref|YP_002790984.1| transcriptional regulator [Lactobacillus brevis]
 gi|226442557|dbj|BAH56427.1| transcriptional regulator [Lactobacillus brevis]
          Length = 210

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R    LTQ E+  +   ++  IS  E  +S  +  ++I L+     P+  LL+
Sbjct: 5  QKLKQCRSAKNLTQAEVAEQLHVSRKTISGWENERSYPDPTSLIKLSDLYHVPIDDLLR 63


>gi|189465130|ref|ZP_03013915.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM
          17393]
 gi|218131566|ref|ZP_03460370.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM
          20697]
 gi|189437404|gb|EDV06389.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM
          17393]
 gi|217986235|gb|EEC52573.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM
          20697]
          Length = 117

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + IR+ +  TQ++I    G  +S  S  E G   +  D +  L++      + 
Sbjct: 6  QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSNLFGCEPFI 65

Query: 80 LLK 82
          L +
Sbjct: 66 LFE 68


>gi|163798150|ref|ZP_02192086.1| transcriptional regulator, XRE family with cupin sensor [alpha
          proteobacterium BAL199]
 gi|159176593|gb|EDP61171.1| transcriptional regulator, XRE family with cupin sensor [alpha
          proteobacterium BAL199]
          Length = 201

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R +RK    T   +  R G + S +S +E G+    +  +  +A  L + + +L++
Sbjct: 23 GNRVRTLRKARGNTLATLAARAGLSVSMLSAVERGEKAATVLVLHRIAGALGSTIARLVE 82


>gi|152987325|ref|YP_001348762.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150962483|gb|ABR84508.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 183

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +R E +LT  ++  R+  +++ IS +E  +S+     +  LA  L   L +
Sbjct: 5  ELIARRLSTLRSERRLTLAQLAERSAVSKAMISRIERNESSPTASVLGRLAGGLGVTLSE 64

Query: 80 LL 81
          LL
Sbjct: 65 LL 66


>gi|330825526|ref|YP_004388829.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329310898|gb|AEB85313.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 96

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + ++ G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLM 84


>gi|330467327|ref|YP_004405070.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328810298|gb|AEB44470.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
          Length = 363

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 29/63 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R    ++Q+++    G  ++ ++++E G   ++   +  L+  L   +  L
Sbjct: 9  LVGEQVRQARLSLGISQQDLATMVGLDRTMLAKVEAGSRRLDALELAKLSRALKVSMEYL 68

Query: 81 LKP 83
          ++P
Sbjct: 69 IQP 71


>gi|332654831|ref|ZP_08420573.1| conserved domain protein [Ruminococcaceae bacterium D16]
 gi|332516174|gb|EGJ45782.1| conserved domain protein [Ruminococcaceae bacterium D16]
          Length = 68

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++  N  +  R E  L+Q ++    G ++  IS +ETG+        ++L   LD   
Sbjct: 3  DQLVLKNRLKVARAEKNLSQGDLAKLVGVSRQTISSIETGQFNPTAKLALVLCIALDKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|255527402|ref|ZP_05394276.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296184943|ref|ZP_06853354.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
 gi|255508893|gb|EET85259.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296050725|gb|EFG90148.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
          Length = 176

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  +  R+E   TQK +   +  +Q  IS +ET + +I  +N+  + + L+ P+  +
Sbjct: 1  MIGNAIKEAREEKGFTQKYLGEASCLSQKTISAIETCRRSITQENLKNICNELNNPIVYM 60


>gi|256370857|ref|YP_003108681.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans
          DSM 10331]
 gi|256007441|gb|ACU53008.1| transcriptional regulator, XRE family [Acidimicrobium
          ferrooxidans DSM 10331]
          Length = 169

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW-KL 80
               R  R+ A LTQ E+  R G  QS +S  E+G    ++  +  L       L  +L
Sbjct: 4  VGEVLREARRRAGLTQAELGRRAGVTQSVVSAYESGARQPSVSMLARLVAAAGAELRMEL 63

Query: 81 LKP 83
           +P
Sbjct: 64 SEP 66


>gi|297201083|ref|ZP_06918480.1| regulatory protein [Streptomyces sviceus ATCC 29083]
 gi|197712131|gb|EDY56165.1| regulatory protein [Streptomyces sviceus ATCC 29083]
          Length = 448

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +R E  LTQK++     +  ++IS LE+G+   + D +  LA  L     +L
Sbjct: 9  IIGRRVQQLRVERGLTQKQLAEPA-YTPAYISTLESGRVRPSDDALRHLADRLGVGFEEL 67


>gi|111220424|ref|YP_711218.1| putative DNA-binding protein [Frankia alni ACN14a]
 gi|111147956|emb|CAJ59622.1| Putative DNA-binding protein (partial match) [Frankia alni
          ACN14a]
          Length = 328

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ R+ A+++ +++  + G +  ++S++E G    + + +  +A  L      L
Sbjct: 13 IRDQRRAAQISLRQLAKQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67


>gi|94972375|ref|YP_595594.1| PbsX family transcriptional regulator [Lawsonia intracellularis
          PHE/MN1-00]
 gi|94731912|emb|CAJ53901.1| transcriptional regulator, PbsX family [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 93

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           RN RK AKLTQ  +  + G   ++I E+E G+   +++ ++  +  +     +LL
Sbjct: 13 IRNYRKTAKLTQARLGEKLGVKGNYIGEIERGEEHPSVEMLVKFSLHMKVRPGELL 68


>gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. TM1040]
          Length = 190

 Score = 50.4 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R++A L+Q+ +  +TG   S IS +E+GK   ++  +  +   +   L    
Sbjct: 13 LGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLSDFF 72


>gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
 gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4]
          Length = 258

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N +++R   KL+Q+ +       +S I   E  +S+  I+ +I  +     P+  LL+
Sbjct: 6  KNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRSSPTIEFLIAFSDYFKIPIDILLR 64


>gi|300743994|ref|ZP_07073014.1| putative Helix-turn-helix domain protein [Rothia dentocariosa M567]
 gi|311113246|ref|YP_003984468.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
 gi|300380355|gb|EFJ76918.1| putative Helix-turn-helix domain protein [Rothia dentocariosa M567]
 gi|310944740|gb|ADP41034.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
          Length = 135

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 33/69 (47%)

Query: 14  AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             +  R       R++R+    T +E+      +  ++SE+E G+   + + +  +   L
Sbjct: 32  KTVPLRQAIGEVLRDVRQRQGRTLREVSQSARVSLGYLSEVERGQKEASSELLAWICQAL 91

Query: 74  DTPLWKLLK 82
           D P++++L+
Sbjct: 92  DIPMYQMLR 100


>gi|282854487|ref|ZP_06263823.1| cupin domain protein [Propionibacterium acnes J139]
 gi|282582348|gb|EFB87729.1| cupin domain protein [Propionibacterium acnes J139]
          Length = 258

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 29/83 (34%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P +     ++               +  R   + T  ++    G ++  +  +E G   
Sbjct: 55  LPTKCSIMHYMDTGAEPLAHAIGARVKQQRMARRWTLDQLARYAGVSRRVLVNVEQGAVN 114

Query: 61  INIDNMIILAHTLDTPLWKLLKP 83
             +  ++ L+  L   L  L++P
Sbjct: 115 PRVGTLLRLSDALGVGLPALVEP 137


>gi|271969826|ref|YP_003344022.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270513001|gb|ACZ91279.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 118

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 2  PRRKRDEPHLSDAILRE----RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          P R   +     +        R       R +R E      E   R G +  ++SE+E G
Sbjct: 7  PLRPATDRTDPKSSPAREPLWRHALGERLRGLRHERGEKLSETARRAGVSPQYLSEMERG 66

Query: 58 KSTINIDNMIILAHTLDTPLWKL 80
              + + +  +A  LD  L  L
Sbjct: 67 VKEPSSEMIAAVAGALDVTLVDL 89


>gi|254284170|ref|ZP_04959138.1| transcriptional regulator, XRE family with cupin sensor domain
          [gamma proteobacterium NOR51-B]
 gi|219680373|gb|EED36722.1| transcriptional regulator, XRE family with cupin sensor domain
          [gamma proteobacterium NOR51-B]
          Length = 211

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 31/68 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          AI    +        +R+    T  ++ + +G ++S +S++E GK+   +     +A + 
Sbjct: 26 AIDPAALRLGQRVVEMRQNNGQTLDQLASASGVSRSMLSQIERGKANPTLAVTYRIAQSF 85

Query: 74 DTPLWKLL 81
             + +++
Sbjct: 86 GLSIGEMV 93


>gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5]
 gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771]
          Length = 182

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris
          trichoides DG6]
 gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris
          trichoides DG6]
          Length = 181

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +R+E  LT +E+ + +G   S++S LE  K  I++ N+  LA      +  
Sbjct: 1  MSLGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60

Query: 80 LLK 82
            +
Sbjct: 61 FFE 63


>gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 101

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              + +RKE  LTQ+++  + G A + I+ +ETG   I+ID  I L
Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIEL 85


>gi|307701699|ref|ZP_07638715.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mobiluncus mulieris FB024-16]
 gi|307613202|gb|EFN92455.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mobiluncus mulieris FB024-16]
          Length = 96

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M   +R E        R  ++        R  A LTQ E+  R G  Q++IS LE+G++ 
Sbjct: 15 MSPEQRREYEAQTPRSRAALLAAEIAYEARMSAGLTQAELGERLGRKQTYISALESGRAN 74

Query: 61 INIDNMIILAHTLDTPL 77
            I  +  L       L
Sbjct: 75 PTIATLEELVDATGKRL 91


>gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 206

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N    RK   ++ +E+ NR G  +  I   ETG+  I  D ++ +A  LD     
Sbjct: 6  KIIGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIADALDIDPAD 65

Query: 80 L 80
          L
Sbjct: 66 L 66


>gi|316935911|ref|YP_004110893.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          DX-1]
 gi|315603625|gb|ADU46160.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          DX-1]
          Length = 480

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q +I    G + S+++ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22]
 gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces
          scabiei 87.22]
          Length = 509

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|228474760|ref|ZP_04059491.1| helix-turn-helix domain protein [Staphylococcus hominis SK119]
 gi|228271423|gb|EEK12791.1| helix-turn-helix domain protein [Staphylococcus hominis SK119]
          Length = 200

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +NIRK   +TQ ++  +TGF+Q+ IS  E G+ +I    +   A  L+ 
Sbjct: 13 IKNIRKSKNMTQSKLSEKTGFSQNTISNHENGRRSIGEKEVEKYAKALEV 62


>gi|311747894|ref|ZP_07721679.1| transcriptional regulator [Algoriphagus sp. PR1]
 gi|126575888|gb|EAZ80198.1| transcriptional regulator [Algoriphagus sp. PR1]
          Length = 231

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + +RK+  LTQ+ + +  G ++S ++  E+      +D ++ L+  L   L  LL+
Sbjct: 6  NIKFLRKQKNLTQEIMASTIGISRSKLAGYES-SVNPPLDTLVKLSDALGVSLDILLR 62


>gi|118464880|ref|YP_881421.1| regulatory protein [Mycobacterium avium 104]
 gi|118166167|gb|ABK67064.1| regulatory protein [Mycobacterium avium 104]
          Length = 189

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           LT +E+  R G   S +S LE+GK  + +D++  LA  L     +LL+P
Sbjct: 23 GLTLQEVGARAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 72


>gi|325282101|ref|YP_004254643.1| helix-turn-helix domain-containing protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324313910|gb|ADY34463.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM
          20712]
          Length = 110

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          RD          +        +N R +  LTQ+E+  R G  +S I +LE G  +I +  
Sbjct: 25 RDAMEEQLKEEVQAYFVGEAIKNARLKQHLTQEELGERIGVKRSQICKLENGNCSITLST 84

Query: 66 MIILAHTLDT 75
          M  +   L  
Sbjct: 85 MRRVFKALGI 94


>gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 509

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|296446438|ref|ZP_06888382.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gi|296256073|gb|EFH03156.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 205

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+  E+  ++G A+S IS++E  ++   +  +  L+  LD  + ++L
Sbjct: 23 LGATVQRLRKAYNLSLSELSQQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERVL 82

Query: 82 K 82
          +
Sbjct: 83 Q 83


>gi|254555732|ref|YP_003062149.1| transcriptional regulator, xre family [Lactobacillus plantarum
          JDM1]
 gi|254044659|gb|ACT61452.1| transcriptional regulator, xre family [Lactobacillus plantarum
          JDM1]
          Length = 221

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   LTQ+ + ++    +  +S  E G +  N+D ++ L+  L   L KLL
Sbjct: 3  LGQALKLQREALGLTQQVLADQLHVTRQTVSRWENGSTYPNLDTLVELSDRLQISLDKLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC
          29149]
 gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC
          29149]
          Length = 120

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I VN    +RK+  LTQ  +    G +Q  IS+ E G   I  D ++ L+     P+ 
Sbjct: 5  RCILVNRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPID 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 YILR 68


>gi|111038055|ref|YP_709142.1| conjugal transfer protein TrbA [IncP-1 plasmid pKJK5]
 gi|110781060|emb|CAK02644.1| transcriptional regulator protein [IncP-1 plasmid pKJK5]
          Length = 124

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          ++IF  N   I  E  +T+ E+  R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 3  KVIFFTNVLRILDERGMTKNELSERSGVSISFLSDLTTGKANPSLKVMEAIASA 56


>gi|53721415|ref|YP_110400.1| DNA-binding regulatory protein [Burkholderia pseudomallei K96243]
 gi|52211829|emb|CAH37828.1| putative DNA-binding regulatory protein [Burkholderia
          pseudomallei K96243]
          Length = 81

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RKE  ++Q+ + +     +S + ++E G+  +   N++ +A  L     +LL
Sbjct: 17 LGAAIRARRKELVMSQEALADFAEIDRSHMGKIERGERNVTFMNIVRIARALQLLPSELL 76

Query: 82 K 82
          +
Sbjct: 77 R 77


>gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces
          griseoaurantiacus M045]
 gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces
          griseoaurantiacus M045]
          Length = 509

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|316932003|ref|YP_004106985.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599717|gb|ADU42252.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 104

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R  R+  +L+Q E+    G   S I+  E G+   + DN+  LA  L      LL
Sbjct: 10 FASRLRKTRETRELSQSELAREAGMQPSAIAHFEAGRRKPSFDNVRALAKALKVSADYLL 69


>gi|300855029|ref|YP_003780013.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300435144|gb|ADK14911.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 71

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RKE K+TQ+E+ +     +  I  LE GK   +I     +A   +  + ++ 
Sbjct: 8  NKIRELRKERKITQEELADFCNVTRQTIISLENGKYNPSIFLAYKIAKIFNMTIEQVF 65


>gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 251

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +    +RKE  LTQK++ +  G +   +S  ETGK   +   M  L   LD  + +LL
Sbjct: 8  GSFISEMRKEKGLTQKQLADLVGVSDKAVSRWETGKGLPDTSIMPELCKALDININELL 66


>gi|293395281|ref|ZP_06639566.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
 gi|291422238|gb|EFE95482.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
          Length = 185

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+ +   +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM
          12442]
 gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4]
 gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4]
 gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM
          12442]
          Length = 123

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +RK   LT KE+  +   A+S IS  E G    + D +   A   +     L
Sbjct: 1  MIGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|226938551|ref|YP_002802313.1| hypothetical protein pCC3_03 [Leuconostoc citreum]
 gi|229587262|ref|YP_002860113.1| hypothetical protein pFMBL1_p3 [Leuconostoc citreum]
 gi|209165330|gb|ACI41226.1| hypothetical protein [Leuconostoc citreum]
 gi|225380896|gb|ACN88702.1| hypothetical protein [Leuconostoc citreum]
          Length = 204

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK+  LTQ+E+ +++      +  LE G+  +++ ++  +A+ L  P+  L 
Sbjct: 5  NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGE-DVSLSSLSAIANALSVPISGLF 60


>gi|222082024|ref|YP_002541389.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726703|gb|ACM29792.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 160

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P        +R +     R IR  + L+Q E+ ++   +   I + E+GK+ ++   +  
Sbjct: 25 PDTPSIHPIDRHV-GQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYE 83

Query: 69 LAHTLDTPL 77
          +A+ L+ P+
Sbjct: 84 IANCLNVPI 92


>gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2]
 gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2]
          Length = 201

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+  +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79


>gi|111222160|ref|YP_712954.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111149692|emb|CAJ61384.1| Putative transcriptional regulator [Frankia alni ACN14a]
          Length = 100

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82
             R IR+   LTQ+++ +R G  ++ +++LE+G +  I++   +I+A  LD  L +LL 
Sbjct: 29 ERLRAIRQLRGLTQQQVADRCGLTRTAVTDLESGRRRDISLGQALIIASALDVDLGRLLD 88

Query: 83 P 83
          P
Sbjct: 89 P 89


>gi|83952018|ref|ZP_00960750.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
 gi|83837024|gb|EAP76321.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
          Length = 207

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      R +RK    T ++   + G A+S +S++E G+ +   + +  LA  L+  +
Sbjct: 23 EPLNLGQRVRELRKARDWTLEQAAKQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISV 82

Query: 78 WKLLK 82
           +L  
Sbjct: 83 PQLFT 87


>gi|312865324|ref|ZP_07725552.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311099435|gb|EFQ57651.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 101

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            RKE  +TQK++   +G +Q  I+ +ETGK++  ID ++ +   L   L
Sbjct: 39 RARKEKGITQKQLEEMSGVSQPVIARMETGKTSPQIDTVLKVLACLGKNL 88


>gi|312953700|ref|ZP_07772536.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|310628374|gb|EFQ11657.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|315151831|gb|EFT95847.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
          Length = 231

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R E  LTQ E+  +    +  IS  E  KS  NID +I L++  +  L +LLK
Sbjct: 3  RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 55


>gi|260888585|ref|ZP_05899848.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330838124|ref|YP_004412704.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260861782|gb|EEX76282.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329745888|gb|AEB99244.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 97

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ER I        R    LTQKE+  +TG AQ+ +S +E G    +I  +   A  L  
Sbjct: 25 EPERNII-RAIVEARIAQNLTQKEVAEKTGIAQAELSRMENGLRNPSIKLLQRFAEGLGL 83

Query: 76 PLWKLLKP 83
           L    +P
Sbjct: 84 VLKISFEP 91


>gi|271502480|ref|YP_003335506.1| XRE family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270346035|gb|ACZ78800.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586]
          Length = 106

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F    +  R    L+QK++    G     A + I+  E G    +ID    L+  LD P
Sbjct: 10 VFCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQQLSDALDVP 69

Query: 77 L 77
          L
Sbjct: 70 L 70


>gi|229549206|ref|ZP_04437931.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC
          29200]
 gi|307270616|ref|ZP_07551907.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307276916|ref|ZP_07558026.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307287508|ref|ZP_07567551.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|229305443|gb|EEN71439.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC
          29200]
 gi|306501246|gb|EFM70549.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306506339|gb|EFM75499.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306512926|gb|EFM81567.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|315025553|gb|EFT37485.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315032799|gb|EFT44731.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315035182|gb|EFT47114.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315143802|gb|EFT87818.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
 gi|315159317|gb|EFU03334.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315162169|gb|EFU06186.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315164906|gb|EFU08923.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
 gi|315168790|gb|EFU12807.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
 gi|329577382|gb|EGG58837.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 231

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R E  LTQ E+  +    +  IS  E  KS  NID +I L++  +  L +LLK
Sbjct: 3  RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLK 55


>gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 141

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK  + TQ+E+  +   ++  I++ E+G+S  +I + I LA   +  L  L
Sbjct: 1  MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|186474250|ref|YP_001861592.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184196582|gb|ACC74546.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 215

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +        R+ RK   LT  ++  ++G A S IS+ E G   +  D    LAH L 
Sbjct: 18 AQIDHQAVGARLRDARKARGLTLMQLSEQSGIAVSTISKAERGDIALTYDKFAALAHALQ 77

Query: 75 TPLWKLL 81
               + 
Sbjct: 78 LEFDAIF 84


>gi|182438050|ref|YP_001825769.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326778693|ref|ZP_08237958.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178466566|dbj|BAG21086.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326659026|gb|EGE43872.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 285

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  
Sbjct: 2  PSNVNPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRD 60

Query: 69 LAHTLDTP 76
          L    +  
Sbjct: 61 LCGVYEVE 68


>gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter
          bemidjiensis Bem]
 gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein
          [Geobacter bemidjiensis Bem]
          Length = 209

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              +  R    LTQKE     G  Q ++S +ETG+   +   +I L+HT   
Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGI 63


>gi|94495587|ref|ZP_01302167.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58]
 gi|94424975|gb|EAT09996.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58]
          Length = 470

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R ++     R +R+E  L+Q ++    G + S+++ LE  +  +    M+ LA+T D  
Sbjct: 6  DRKLYLGPKLRVLRRELGLSQTQMAEELGVSPSYLNHLERNQRPLTAQMMLRLANTYDID 65

Query: 77 LWKLLKP 83
          +     P
Sbjct: 66 IRDFAAP 72


>gi|17549539|ref|NP_522879.1| putative DNA-binding transcriptional regulatory transcription
          regulator protein [Ralstonia solanacearum GMI1000]
 gi|17549570|ref|NP_522910.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
 gi|17431793|emb|CAD18471.1| putative dna-binding transcriptional regulatory transcription
          regulator protein [Ralstonia solanacearum GMI1000]
 gi|17431824|emb|CAD18502.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 205

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R+E  LT  E+  R+G ++  + E+E G++  +I  +  +A      +  ++
Sbjct: 22 VSSRLKALRREHTLTLDELSRRSGVSKGMLVEIEKGEANPSIAILCKVAAAFGVSVADIV 81


>gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1]
 gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1]
          Length = 120

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F    + +R +EA LTQ+ +  + G A++ ++  E GK   +++ +  +A         
Sbjct: 1  MFAERLKELRKREAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|146295669|ref|YP_001179440.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145409245|gb|ABP66249.1| helix-turn-helix domain protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 124

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R +  LTQKE+  + G  Q+ +S+LE+G+    +  +  ++  L   
Sbjct: 43 RIKNNLTQKELAQKLGMTQAMVSKLESGEYNPTVKMLYEISKALGLE 89


>gi|297242658|ref|ZP_06926596.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD]
 gi|296888869|gb|EFH27603.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD]
          Length = 214

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R EA LTQ+E+      +++ +++ ET +   +I+N+  +A  L   +  LL
Sbjct: 7  LGEKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDYLL 66


>gi|296104791|ref|YP_003614937.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295059250|gb|ADF63988.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 200

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  RN RKE KL+  E+  R   ++  + E+E G +  +I  +  LA  L   +  ++
Sbjct: 22 VANRIRNWRKEKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILCKLAAALGISVADIV 81


>gi|255326363|ref|ZP_05367447.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
 gi|255296580|gb|EET75913.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
          Length = 135

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 36/79 (45%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R+         ++  R       R++R+    T +E+  R   +  ++SE+E G+   + 
Sbjct: 22  RQVAPVVEEAKVVPLRQAIGEVLRDVRQRQGRTLREVSQRARVSLGYLSEVERGQKEASS 81

Query: 64  DNMIILAHTLDTPLWKLLK 82
           + +  +   LD P+ ++L+
Sbjct: 82  ELLAWICQALDIPMSQMLR 100


>gi|256423770|ref|YP_003124423.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256038678|gb|ACU62222.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 114

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++ F      +RK+ KL+Q EI  + G   + I   E  +   +I+    +A  L+  L
Sbjct: 2  KQITFGKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIAAALEVSL 61

Query: 78 WKLL 81
            L+
Sbjct: 62 DYLV 65


>gi|298345880|ref|YP_003718567.1| hypothetical protein HMPREF0573_10754 [Mobiluncus curtisii ATCC
          43063]
 gi|304390415|ref|ZP_07372368.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|298235941|gb|ADI67073.1| hypothetical protein HMPREF0573_10754 [Mobiluncus curtisii ATCC
          43063]
 gi|304326171|gb|EFL93416.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 80

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R     TQ+ +  + G ++  I  LE G   + +D  +  A  +  PL  +L
Sbjct: 16 FGQLIRMRRVIFDYTQENLAEKAGVSRMAIKRLEAGNPNVRLDTALKAAQAVGVPLPTIL 75

Query: 82 K 82
          +
Sbjct: 76 E 76


>gi|239626415|ref|ZP_04669446.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239516561|gb|EEQ56427.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 146

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +NIR + KLTQ E+  R    +  +S  E G ST NI+ +  ++   D  +  LL
Sbjct: 7  LKNIRVKNKLTQDEMAERLSVTRQAVSRWENGDSTPNIETLKQISIAFDVSINTLL 62


>gi|223983971|ref|ZP_03634129.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM
          12042]
 gi|223964047|gb|EEF68401.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM
          12042]
          Length = 179

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LT +E+ +R    + ++S+LE   ++ +I  +  +   L T L K  +
Sbjct: 4  GYRIKQLRTKNNLTLEELASRCELTKGFLSQLERNLTSPSIATLQDIVEALGTTLAKFFQ 63


>gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family
           [Thermomicrobium roseum DSM 5159]
 gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family
           [Thermomicrobium roseum DSM 5159]
          Length = 506

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R  R+   L+Q+++  R G ++  +  +E G+ T ++   + LA  L   + +L 
Sbjct: 144 RVRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLTPSVAVALRLARALGCAVEELF 200


>gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2]
 gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2]
          Length = 209

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +DA + ER+      R +R     T   +  R G ++S IS +E G ++     +  LA
Sbjct: 11 DTDAGVNERI--ARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPTAAVLDKLA 68

Query: 71 HTLDTPLWKLL 81
            L   L  L 
Sbjct: 69 AGLGISLASLF 79


>gi|158319324|ref|YP_001511831.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158139523|gb|ABW17835.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 65

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
          M+     R +R     T  +I N T  ++S+I ELE G K   +++ +++LA  L   + 
Sbjct: 1  MLNGLKVRELRNIKGYTTLDISNLTHISKSYIEELERGAKKNPSLNKVVVLAKVLGVKVD 60

Query: 79 KLL 81
          +L+
Sbjct: 61 ELI 63


>gi|124009645|ref|ZP_01694317.1| DNA-binding protein [Microscilla marina ATCC 23134]
 gi|123984695|gb|EAY24680.1| DNA-binding protein [Microscilla marina ATCC 23134]
          Length = 85

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N    RK+   +Q E+  + G     I   E  +   +ID    +A+ L+  L  
Sbjct: 1  MSFGENVAVERKKKDFSQGELAKQVGITAVTIGRYERDEIKPSIDIATKIANALEVSLDY 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|76799152|ref|ZP_00781336.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|76799661|ref|ZP_00781770.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|76584989|gb|EAO61638.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|76585504|gb|EAO62078.1| transcription regulator [Streptococcus agalactiae 18RS21]
          Length = 97

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +  R +A LTQ E+  + G AQ+  +  E G      + +  LA    T L  L
Sbjct: 1  MLKDNIKKARLDAGLTQLEVAEKLGVAQAQYARWENGGRNPKDETVEKLAEIFGTSLEIL 60


>gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 112

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RKEA LTQ+E+  + G ++   +  E G+     D +  +A+        L
Sbjct: 1  MLSERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTPDKLTQIANLFGVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 127

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + IR + KLTQ+E+  R  ++Q  +++ E G S  +I N++ +   L+  +  LL
Sbjct: 5  NLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLL 61


>gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 168

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK+  ++Q+++    G ++  +S+ E+G+S   ID +I L++  +     LLK
Sbjct: 6  KIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLK 63


>gi|255038048|ref|YP_003088669.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254950804|gb|ACT95504.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 79

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     R +RKE  LTQ+++    G  ++ IS+LE G ++  ID ++ +   L   +
Sbjct: 9  LLGRAIRTVRKERNLTQEQLGELVGVQKAQISKLENGNNSATIDTILKVFSALKAEI 65


>gi|255602033|ref|XP_002537801.1| conserved hypothetical protein [Ricinus communis]
 gi|223515025|gb|EEF24581.1| conserved hypothetical protein [Ricinus communis]
          Length = 137

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +R       R  R   K TQ       G    ++S LE G   +++D ++++   L+ 
Sbjct: 1  MVDRPPIGQVIRTERLNLKQTQASFAALCGITPQYLSLLELGDVNVSLDTLLMICKVLNK 60

Query: 76 PLWKLL 81
          PL  L+
Sbjct: 61 PLSVLM 66


>gi|254387621|ref|ZP_05002860.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294814993|ref|ZP_06773636.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|326443362|ref|ZP_08218096.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197701347|gb|EDY47159.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327592|gb|EFG09235.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 276

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +   RE+  F    R++R E   TQ+E+  R G +   IS +ETG+          + 
Sbjct: 8  DPERSPREK--FGQVMRSLRDERGWTQEELAERAGCSSQHISAVETGRRPPTRRFASRID 65

Query: 71 HTLDT 75
              T
Sbjct: 66 RAFGT 70


>gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C
          str. Eklund]
 gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C
          str. Eklund]
          Length = 155

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK  KLTQ+E+  +   ++  +S+ E  +   NI+ +  +A  LD  +  L+
Sbjct: 3  LGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQRKPNIEMLNKIAKALDVTVNDLM 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|118467423|ref|YP_887029.1| XRE family transcriptional regulator protein [Mycobacterium
          smegmatis str. MC2 155]
 gi|118168710|gb|ABK69606.1| transcriptional regulator, XRE family protein [Mycobacterium
          smegmatis str. MC2 155]
          Length = 112

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  RN R +   T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLS 65

Query: 79 KLLK 82
          ++L 
Sbjct: 66 RVLT 69


>gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
 gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155]
          Length = 472

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +       R +R+E  LTQ  +    G + S+I++LE  +  + +  ++ L+   D P
Sbjct: 2  AKTFIGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLP 60


>gi|332292122|ref|YP_004430731.1| helix-turn-helix domain protein [Krokinobacter diaphorus
          4H-3-7-5]
 gi|332170208|gb|AEE19463.1| helix-turn-helix domain protein [Krokinobacter diaphorus
          4H-3-7-5]
          Length = 115

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +N+RK  KL+Q+E+ +    ++S ++ +E+G    +I  +  +A  L+  + +LL
Sbjct: 11 LGGNIKNLRKSRKLSQEELASFISLSRSSVANIESGYHQPSIHVIYQIAVVLECKITELL 70


>gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 102

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               N+RK+  L+Q +  N    ++  IS  E GKS  +++ +I ++      + +LLK
Sbjct: 4  GEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDELLK 63


>gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides
          T2-87]
          Length = 124

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE  LTQ+E+ + +  +   +   E G    + + +      L+  L  L+
Sbjct: 7  LGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDSLM 66


>gi|290580727|ref|YP_003485119.1| hypothetical protein SmuNN2025_1201 [Streptococcus mutans NN2025]
 gi|254997626|dbj|BAH88227.1| hypothetical protein [Streptococcus mutans NN2025]
          Length = 294

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R+ RK+  L+Q+++      ++  I++ E+G  T ++ N++ L+      + +
Sbjct: 1  MTFETRLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQ 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229553254|ref|ZP_04441979.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258540134|ref|YP_003174633.1| transcription regulator [Lactobacillus rhamnosus Lc 705]
 gi|229313340|gb|EEN79313.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257151810|emb|CAR90782.1| Transcription regulator [Lactobacillus rhamnosus Lc 705]
          Length = 67

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R+E KL+Q  +  + G A+  I+ +E GK   +++  + L+ TL T L  L 
Sbjct: 2  NRVREFRREKKLSQLALAEKIGVARQTINLIENGKYNPSLELCLKLSWTLGTDLNTLF 59


>gi|229000727|ref|ZP_04160239.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17]
 gi|228759027|gb|EEM08061.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17]
          Length = 145

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R+    +Q+++  + G  +  + + E+ KS  +IDN+I+L+   +  + +L+
Sbjct: 6  LGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans
          DSM 16841]
 gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans
          DSM 16841]
          Length = 178

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +M   +  R  RKE  LTQ+E+  R G     +++ E G +  +I+ +  +A  L   L 
Sbjct: 3  QMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARLLHISLD 62

Query: 79 KLL 81
           LL
Sbjct: 63 TLL 65


>gi|220904493|ref|YP_002479805.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans
          subsp. desulfuricans str. ATCC 27774]
 gi|219868792|gb|ACL49127.1| transcriptional regulator, XRE family [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 94

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 34/70 (48%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D I           +  R+ A LTQ E+   +G ++ ++S LE G+   +++ ++ +A  
Sbjct: 2  DKIPNLNWALAKVVKEARETAGLTQNELAGFSGLSEIYLSSLERGQRGDSLNALMQIAGV 61

Query: 73 LDTPLWKLLK 82
          L     +L++
Sbjct: 62 LKLEASELVR 71


>gi|182626781|ref|ZP_02954520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens
          D str. JGS1721]
 gi|177907881|gb|EDT70476.1| transcriptional regulator, Cro/CI family [Clostridium perfringens
          D str. JGS1721]
          Length = 63

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +  NN + IRKE  +  +E+   +G +   I  +E+GKS    I+ +  LA  LD  + +
Sbjct: 1  MLSNNLKKIRKEKNIGIRELDKISGVSHPIIINIESGKSKNPTINTVKKLAKALDVSIDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVE 63


>gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM
          1552]
 gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM
          1552]
          Length = 185

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R+   LT +E+ NR+   + ++S+LE   ++ +I  +  +   L T L +  
Sbjct: 12 GGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLTSPSITTLEDILEALGTNLQEFF 70


>gi|168183395|ref|ZP_02618059.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|182673482|gb|EDT85443.1| conserved hypothetical protein [Clostridium botulinum Bf]
          Length = 177

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +R +  L   ++   +G ++  +S++E G+S   I+ +  +A+ L     KL
Sbjct: 6  IISANLKKLRTDPNLNLGQLFELSGVSKVMLSQIEKGESNPTINTIWKIANGLQVTYTKL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC
          27756]
 gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC
          27756]
 gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 215

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               N+RK+  L+Q +  N    ++  IS  E GKS  +++ +I ++      + +LLK
Sbjct: 4  GEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDELLK 63


>gi|24379268|ref|NP_721223.1| transcription regulator [Streptococcus mutans UA159]
 gi|24377185|gb|AAN58529.1|AE014922_4 hypothetical protein; putative transcriptional regulator
          [Streptococcus mutans UA159]
          Length = 296

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R+ RK+  L+Q+++      ++  I++ E+G  T ++ N++ L+      + +
Sbjct: 3  MTFETRLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQ 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|134298619|ref|YP_001112115.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051319|gb|ABO49290.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 69

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R E  +TQ+++ ++ G ++  +  +E GK   ++     +A      + +  
Sbjct: 3  NRLRELRNELNITQEQLADKLGVSRQTVISIENGKYNPSLILAYKIAKIFAISIEEAF 60


>gi|289770224|ref|ZP_06529602.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289700423|gb|EFD67852.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 154

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 22 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 80


>gi|288962158|ref|YP_003452453.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914424|dbj|BAI75909.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 483

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 32/64 (50%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A + ++ +     R +R++  LTQ ++ ++ G + S+++ +E  +  + +  ++ L    
Sbjct: 2  ASMDKKAMLGPKVRRLRRDQGLTQAQMADQLGISPSYLNLIEHNQRPVTVPLLLKLGQRF 61

Query: 74 DTPL 77
             L
Sbjct: 62 GVDL 65


>gi|255035795|ref|YP_003086416.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254948551|gb|ACT93251.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 273

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82
          N + +R   KL+Q+ +  + G ++  ++ +E+G+ +   +D++I  +      +  LLK
Sbjct: 11 NIKFLRLRQKLSQEALAEKLGISRVKLNAIESGRTANPTVDDLINFSEYFRMSIDSLLK 69


>gi|227495327|ref|ZP_03925643.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
 gi|226831197|gb|EEH63580.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
          Length = 68

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN   +RKE  L+Q+E+    G +++ IS +ETG+        ++L   LD     L 
Sbjct: 9  NNLPQVRKEKGLSQQELAKLVGVSRNTISSIETGQYCPTAKLALVLCVALDQKFEDLF 66


>gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 77

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R+ R+   +T + + N  G ++  +S +ETGK  +++ N+  ++  LD  L  L+
Sbjct: 10 GSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVLDISLDYLV 68


>gi|213019847|ref|ZP_03335649.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
 gi|212994595|gb|EEB55241.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
          Length = 310

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 14 RYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIA 73

Query: 79 KLL 81
           L+
Sbjct: 74 DLI 76



 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +  R     TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL+
Sbjct: 171 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 230


>gi|167757680|ref|ZP_02429807.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC
          35704]
 gi|167664700|gb|EDS08830.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC
          35704]
          Length = 76

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI+ +  R +R+++ L+QK I +  G  Q+  S+ E GK ++ ++ +I L    +     
Sbjct: 9  MIYRDRLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQFYNVSADY 68

Query: 80 LL 81
          +L
Sbjct: 69 ML 70


>gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753]
 gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753]
          Length = 169

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+E+  +    +  IS+ E G S  + D +I ++  L+TP+  L
Sbjct: 1  MLNENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|163938006|ref|YP_001642891.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163865861|gb|ABY46916.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 64

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E  LTQ+++  +   A+  I  +E GK   ++   + +A  LD  L  L 
Sbjct: 3  NKIKLSRIEKSLTQEQLAFQVKVARQTIGLIEKGKYNPSLQLCLAIAKALDKTLNDLF 60


>gi|270300235|gb|ACZ69041.1| Transcriptional regulator, xre family [Staphylococcus aureus]
          Length = 207

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK  ++TQ+E+  R G ++  IS  E  ++  +I+ +II++   D  L  L+
Sbjct: 3  FGEQIKQLRKSNEITQQEMGARLGVSRQAISHWENNRNLPDIEMLIIISKEFDISLDILI 62


>gi|262403444|ref|ZP_06080002.1| predicted transcriptional regulator [Vibrio sp. RC586]
 gi|262349948|gb|EEY99083.1| predicted transcriptional regulator [Vibrio sp. RC586]
          Length = 207

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR    +T ++   RTG A+S +S++E  + +     M  LAH L   +
Sbjct: 24 EPLKLGQRIKDIRTRLGITLEKASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|163796221|ref|ZP_02190182.1| transcriptional regulator, XRE-family protein [alpha
          proteobacterium BAL199]
 gi|159178363|gb|EDP62905.1| transcriptional regulator, XRE-family protein [alpha
          proteobacterium BAL199]
          Length = 195

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F       RK+A L+  E+  R+G ++S +S++E   +   I  +  +   L+       
Sbjct: 17 FGGEILRARKDAGLSLDELARRSGVSKSILSQIERDSTNPTIATVWRICAALERTPESFF 76

Query: 82 K 82
          +
Sbjct: 77 R 77


>gi|149202181|ref|ZP_01879154.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035]
 gi|149144279|gb|EDM32310.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035]
          Length = 468

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 30/65 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           + +     R +R+E   TQ ++  +   + S+I+ LE  + ++++  ++ +A       
Sbjct: 2  AKTLIGPRLRQLRRERGQTQADMARKLDVSPSYINLLENNQRSLSVQMLMSIADAYAVDW 61

Query: 78 WKLLK 82
            L +
Sbjct: 62 RDLTR 66


>gi|111221332|ref|YP_712126.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a]
 gi|111148864|emb|CAJ60542.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a]
          Length = 198

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  R  A L+  E+  RT  +++ +S++E  +++ ++  +  LA  L  P+  
Sbjct: 12 QVIAARVREYRLAAALSVAELARRTEMSKAMLSKIENAQTSCSLSTLGRLAAGLGVPVTA 71

Query: 80 LLK 82
          L +
Sbjct: 72 LFR 74


>gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus
          thermophilus]
          Length = 111

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+A LTQ E+ ++ G  QS  ++ E GK     +N++ +A  L+  +  L+
Sbjct: 3  FSERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSVDYLV 62


>gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum
          UW551]
 gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609]
 gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum
          UW551]
 gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609]
          Length = 201

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+  +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79


>gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 176

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK+  ++Q+E+ +  G  +  +S  E  +   ++D    LA      L  L
Sbjct: 1  MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLYGVSLDDL 60


>gi|162448725|ref|YP_001611092.1| Cro/CI family transcriptional regulator [Sorangium cellulosum 'So
          ce 56']
 gi|161159307|emb|CAN90612.1| transcriptional regulator, Cro/CI family [Sorangium cellulosum
          'So ce 56']
          Length = 92

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N R +R++  +TQ+++    G     +  +E G+ ++++  ++ LA+ LD     LL+
Sbjct: 14 AANLRRLRQQRGITQEQLAEAAGIELRTMQAIEVGRQSMSLGTLVRLANALDVSPGVLLR 73


>gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 5_2_54FAA]
 gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 5_2_54FAA]
          Length = 247

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RK  KLTQK++ ++   +   +S+ E G S  +I  ++ LA+  D  + +LL
Sbjct: 9  VGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSMPSIPLLMPLANLFDITVTELL 68

Query: 82 K 82
          K
Sbjct: 69 K 69


>gi|260574980|ref|ZP_05842982.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
 gi|259022985|gb|EEW26279.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
          Length = 446

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          ++    +         +  +  R+ R +  + Q E+    G + +++S +E  + +I   
Sbjct: 2  QKAIEIIPGIAQLAHELTGSRIRDKRLQRAMRQSELAELAGISATYLSLIERNRRSIGGK 61

Query: 65 NMIILAHTLDTPLWKL 80
           +  +A  L      L
Sbjct: 62 LLNQIARALAVEPVSL 77


>gi|239834303|ref|ZP_04682631.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG
          3301]
 gi|239822366|gb|EEQ93935.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG
          3301]
          Length = 470

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|166032267|ref|ZP_02235096.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC
          27755]
 gi|166027990|gb|EDR46747.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC
          27755]
          Length = 80

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78
          +   N ++ R++AKLTQ ++  R   + S++S++E      +++I  +  +A+ L   + 
Sbjct: 12 VIGANIKHYREQAKLTQVQLAERAKISISYLSKIEAAGCDKSLSISVLNQIANVLSVDIN 71

Query: 79 KLLK 82
          +  K
Sbjct: 72 EFFK 75


>gi|318061199|ref|ZP_07979920.1| hypothetical protein SSA3_24859 [Streptomyces sp. SA3_actG]
 gi|318076959|ref|ZP_07984291.1| hypothetical protein SSA3_09605 [Streptomyces sp. SA3_actF]
          Length = 288

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R +R+ A LTQ ++      + S+I++ E G+     D    L   L T
Sbjct: 18 FGEELRRLREAAGLTQADLAELVFVSASYIAQFEAGRRKPMEDVAKRLDQALKT 71


>gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 130

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  + +RKE  LTQ+++    G ++S I+  ET +   + + +  +A   +  +  
Sbjct: 1  MTFSDRLKELRKEKNLTQEDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|293401078|ref|ZP_06645223.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 5_2_54FAA]
 gi|291306104|gb|EFE47348.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 5_2_54FAA]
          Length = 177

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LT +E+ +R+   + ++S++E   ++ ++  +  +   L T L    K
Sbjct: 4  GAKIKALRIQNDLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLASFFK 63


>gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24]
 gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24]
          Length = 208

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+   LT  ++   TG + S +S LE+G+    + +++ LA     PL +L+
Sbjct: 21 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 80


>gi|268592540|ref|ZP_06126761.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291311950|gb|EFE52403.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 186

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +        R+++ L+  E+  + G A+S +S+LE+G    +I+ +  L   LD P  +
Sbjct: 9  ELISKALVRERQKSGLSLSELSRKAGIAKSTLSQLESGSGNPSIETLWALCVALDIPFAR 68

Query: 80 LLK 82
          L++
Sbjct: 69 LIE 71


>gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces himastatinicus ATCC 53653]
          Length = 509

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|229070587|ref|ZP_04203825.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
 gi|228712492|gb|EEL64429.1| Transcriptional regulator, MerR [Bacillus cereus F65185]
          Length = 186

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 9  GQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67


>gi|229130504|ref|ZP_04259460.1| Transcription regulator, probable-related protein [Bacillus
          cereus BDRD-Cer4]
 gi|228652843|gb|EEL08725.1| Transcription regulator, probable-related protein [Bacillus
          cereus BDRD-Cer4]
          Length = 68

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +++NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L
Sbjct: 4  LYLNNVKQYRKSEDLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSL 63

Query: 81 L 81
           
Sbjct: 64 F 64


>gi|212633084|ref|YP_002309609.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3]
 gi|212554568|gb|ACJ27022.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3]
          Length = 240

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ R    L+Q E+    G  QS++S+LE  KS  + D    L   L     +
Sbjct: 1  MTLGKQIKHYRTARDLSQPELAEMMGIEQSYLSKLENDKSIPSNDVFRSLLTALSVNTTE 60

Query: 80 LL 81
           L
Sbjct: 61 FL 62


>gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 509

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
 gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides
          ethenogenes 195]
          Length = 217

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
          ++       + +RK+  +TQ E+  R+G  +++IS+LE+GK+ +  +     LA  LD  
Sbjct: 3  DKSSIGITLKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQKLARGLDIS 62

Query: 77 LWKLL 81
             LL
Sbjct: 63 TSALL 67


>gi|75677167|ref|YP_319588.1| XRE family transcriptional regulator [Nitrobacter winogradskyi
          Nb-255]
 gi|74422037|gb|ABA06236.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi
          Nb-255]
          Length = 483

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 AILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          A    + +F    FR +R++  L+Q +     G + S+++ +E  +  +    ++ LA T
Sbjct: 2  ASDPGKKLFVGPRFRRVRQQLGLSQTQFAEGLGISPSYVNLIERNQRPVTAQILLRLAET 61

Query: 73 LDTPLWKL 80
           D  L  L
Sbjct: 62 YDLDLRDL 69


>gi|39937455|ref|NP_949731.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          CGA009]
 gi|192293238|ref|YP_001993843.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|39651314|emb|CAE29836.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          CGA009]
 gi|192286987|gb|ACF03368.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          TIE-1]
          Length = 480

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q +I    G + S+++ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|319792272|ref|YP_004153912.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315594735|gb|ADU35801.1| helix-turn-helix domain protein [Variovorax paradoxus EPS]
          Length = 283

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 8  EPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            H S A     R  F  + R+ R   +L+Q ++      +   +S +ETG++  + + +
Sbjct: 6  STHSSKAGQPGARDPFGAHLRHWRTHRRLSQLDLAQEAEVSTRHLSYVETGRAAPSREMV 65

Query: 67 IILAHTLDTPLWK 79
          + LA  L+ PL +
Sbjct: 66 LRLAARLEVPLRE 78


>gi|295106118|emb|CBL03661.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 83

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E  L+Q ++    G ++  IS +ETG         ++L   LD     L 
Sbjct: 23 NRLKAARAEQGLSQTDLARLVGVSRQTISAIETGLFNPTAKLALVLCIALDKKFEDLF 80


>gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis
          315-B]
 gi|281297937|gb|EFA90394.1| phage related transcriptional regulator [Peptoniphilus lacrimalis
          315-B]
          Length = 235

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R    LT KE+  + G + S I + E G      D +  ++  L+ P+ K
Sbjct: 1  MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINK 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|229590656|ref|YP_002872775.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|229362522|emb|CAY49429.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 193

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + +  R  A L+  E+  R G A+S +S+LE+G    +I+ +  LA  +   + + 
Sbjct: 18 LLALSIKRERLAAGLSLTELAKRAGVAKSTLSQLESGIGNPSIETLWSLAMAMGLQVTRF 77

Query: 81 LK 82
           +
Sbjct: 78 FE 79


>gi|228948403|ref|ZP_04110686.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228811390|gb|EEM57728.1| hypothetical protein bthur0007_45290 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 206

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLD 74
          ++      R +RKE KL+ ++    TG +  ++S+LETG     +I+ +  LA  LD
Sbjct: 3  KIELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLETGSNKKPSIEILEKLALGLD 59


>gi|229099134|ref|ZP_04230068.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29]
 gi|228684362|gb|EEL38306.1| hypothetical protein bcere0020_43570 [Bacillus cereus Rock3-29]
          Length = 209

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLD 74
          ++      R +RKE KL+ ++    TG +  ++S+LETG     +I+ +  LA  LD
Sbjct: 3  KIELGEYIRKVRKEKKLSLRKAAELTGVSHPYLSQLETGSNKKPSIEILEKLALGLD 59


>gi|163793593|ref|ZP_02187568.1| putative transcriptional regulatory protein [alpha
          proteobacterium BAL199]
 gi|159181395|gb|EDP65910.1| putative transcriptional regulatory protein [alpha
          proteobacterium BAL199]
          Length = 218

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R+ R   ++T  ++  R G + S++S +E G +  ++ N+I +A  L   +  L+ 
Sbjct: 12 GDAIRDRRTSRRMTLGDLAARCGLSVSFLSRVERGHAQSSVGNLIRIADALGGTIHDLIG 71

Query: 83 P 83
          P
Sbjct: 72 P 72


>gi|160942794|ref|ZP_02090035.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445959|gb|EDP22962.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii
           M21/2]
          Length = 134

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query: 9   PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           P L++ +   R       +  R   K+TQ+ +    G ++  +S+ E G S  N  N++ 
Sbjct: 50  PKLTEEVKIVRKSLSEMLKENRTRCKMTQEFVAETIGVSRQAVSKWENGTSEPNTSNLMA 109

Query: 69  LAHTLDTPLWKLLK 82
           LA     P   LLK
Sbjct: 110 LARLYGIPAEDLLK 123


>gi|154501529|ref|ZP_02039230.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC
          29799]
 gi|150269783|gb|EDM97327.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC
          29799]
          Length = 106

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++       R  RK+  LT +++        +++ ++E G    ++   + L   L T  
Sbjct: 2  DKAALGQRLRQARKDKGLTSEKLSELCSINATYLRQIEAGTKVPSLPVFVSLCRELGTHP 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DFLL 65


>gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 203

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  +  R     TQ EI  +    +  IS  E GKS  ++D ++ ++      +  LL
Sbjct: 3  FRNYIKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKSYPDLDTLVKISDIYKISIDTLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|183219415|ref|YP_001840817.1| putative transcriptional regulator [Lactobacillus reuteri]
 gi|300908071|ref|ZP_07125544.1| probable transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|77745369|gb|ABB02585.1| putative transcriptional regulator [Lactobacillus reuteri]
 gi|179366402|gb|ACB86593.1| putative transcriptional regulator [Lactobacillus reuteri]
 gi|300894773|gb|EFK88122.1| probable transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 91

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             +RKE+ L+Q+++   +   QS I+ +E+G +  +ID +  +A+ L   L
Sbjct: 36 LTKVRKESGLSQRDLATVSDVPQSTIARIESG-ANTSIDTLTKIANALGKRL 86


>gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 106

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +RKE +LTQ+++       +  IS  E G  T + D +  LA         L
Sbjct: 3  IVPERLKTLRKERQLTQEQLGELINVTKVSISGYENGNRTPDTDTLRRLADVFGVSTDYL 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 652

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          PH  +     R+    N    R+   LT   +   +  +++ IS LE G     +  +  
Sbjct: 2  PHSVEVDRAARI--GANIARARQRRGLTLDGLAELSCVSRATISALERGHGNPGVQTLWS 59

Query: 69 LAHTLDTPLWKLL 81
          LA  L      LL
Sbjct: 60 LADALGLNFAALL 72


>gi|323492270|ref|ZP_08097428.1| putative transcriptional regulator [Vibrio brasiliensis LMG
          20546]
 gi|323313583|gb|EGA66689.1| putative transcriptional regulator [Vibrio brasiliensis LMG
          20546]
          Length = 206

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 23 EPLKLGQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAVGLQIDM 82

Query: 78 WKLLKP 83
           +L +P
Sbjct: 83 PQLFEP 88


>gi|315223214|ref|ZP_07865075.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315187646|gb|EFU21400.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 135

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+ + LTQ+ +  +   ++  IS  ET K   +I  ++ L+      L +LLK
Sbjct: 4  GKKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDELLK 63


>gi|240171180|ref|ZP_04749839.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
          12478]
          Length = 109

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REVIGDVLRGARTSQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICEALEVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 EVL 68


>gi|296141333|ref|YP_003648576.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296029467|gb|ADG80237.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 128

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R  A+++ +++  + G +  ++S++E G    + D +  +A  L      L
Sbjct: 16 LGEFIRAQRIAAEVSIRQLAEKAGVSNPYLSQIERGLRRPSADVLGQIAKALRLSAEVL 74


>gi|222095409|ref|YP_002529469.1| DNA-binding protein [Bacillus cereus Q1]
 gi|221239467|gb|ACM12177.1| DNA-binding protein [Bacillus cereus Q1]
          Length = 403

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|206974896|ref|ZP_03235811.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|206746915|gb|EDZ58307.1| DNA-binding protein [Bacillus cereus H3081.97]
          Length = 403

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|217959269|ref|YP_002337817.1| DNA-binding protein [Bacillus cereus AH187]
 gi|217068137|gb|ACJ82387.1| DNA-binding protein [Bacillus cereus AH187]
          Length = 403

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|116694764|ref|YP_728975.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529263|emb|CAJ95610.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 198

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++ +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 17 VGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVNLTDFL 76


>gi|323486126|ref|ZP_08091457.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum
          WAL-14163]
 gi|323692982|ref|ZP_08107203.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
 gi|323400693|gb|EGA93060.1| hypothetical protein HMPREF9474_03208 [Clostridium symbiosum
          WAL-14163]
 gi|323502983|gb|EGB18824.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
          Length = 69

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  +  R E  ++Q E+    G ++  IS +ETG+        ++L   LD    +
Sbjct: 5  LILKNRLKTARAEQGISQGELAAMVGVSRQTISYIETGQFNPTAKLALLLCIALDKKFEE 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519]
 gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii]
          Length = 203

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+   TQ+++  +   +++ +S+ E+GK   +ID++  ++      +  LL
Sbjct: 3  LGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKGYPSIDSLKNISALFKISIDDLL 62


>gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 469

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 2  GSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGV 54


>gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 371

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK+  LTQ+ +    G   S +S+ E G++  ++  ++ +A      L  L 
Sbjct: 7  VGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQISLDVLF 66

Query: 82 K 82
          K
Sbjct: 67 K 67


>gi|302866395|ref|YP_003835032.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|302569254|gb|ADL45456.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
          Length = 255

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R+   L+Q ++      +   +S +ETGKS  + D ++ LA  L  PL  
Sbjct: 4  HTVGELLRQWRQHRGLSQLDLAIAADVSARHVSLVETGKSKPSSDMILRLADQLHVPLRD 63


>gi|323343150|ref|ZP_08083381.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463214|gb|EFY08409.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 136

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + +R+E  LTQ ++      ++  +S  E GK   +   +I ++     P+  LLK
Sbjct: 6  NLKRLREENALTQDKVAQSLNVSRQAVSNWEQGKRYPDAIMLIQISEFYGVPVDDLLK 63


>gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 138

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 35/62 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   LTQ+++  + G ++  I + E G+S  ++ +++ L++     +  L
Sbjct: 1  MIYKNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIPDLYSILELSNVYSITIDTL 60

Query: 81 LK 82
          ++
Sbjct: 61 VR 62


>gi|153011249|ref|YP_001372463.1| hypothetical protein Oant_3929 [Ochrobactrum anthropi ATCC 49188]
 gi|151563137|gb|ABS16634.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC
          49188]
          Length = 483

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 16 ERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLD 75

Query: 77 LWKL 80
          L  L
Sbjct: 76 LDSL 79


>gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 224

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +    G  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 43 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 99


>gi|41408076|ref|NP_960912.1| hypothetical protein MAP1978 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41396431|gb|AAS04295.1| hypothetical protein MAP_1978 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 189

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           LT +E+  R G   S +S LE+GK  + +D++  LA  L     +LL+P
Sbjct: 23 GLTLQEVGARAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 72


>gi|26988969|ref|NP_744394.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983786|gb|AAN67858.1|AE016417_6 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 197

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 34/67 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R +     R +RK  ++T K++   +G   S +S++E  + +++ + +   A  L+ 
Sbjct: 7  QLDRAVVGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNV 66

Query: 76 PLWKLLK 82
           + +L +
Sbjct: 67 DIAQLFR 73


>gi|148548701|ref|YP_001268803.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512759|gb|ABQ79619.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 197

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 34/67 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R +     R +RK  ++T K++   +G   S +S++E  + +++ + +   A  L+ 
Sbjct: 7  QLDRAVVGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNV 66

Query: 76 PLWKLLK 82
           + +L +
Sbjct: 67 DIAQLFR 73


>gi|329936216|ref|ZP_08286009.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
 gi|329304326|gb|EGG48206.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
          Length = 196

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + D +  +A  L      L
Sbjct: 9  LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSADVLQQVAKALRISAETL 67


>gi|320094023|ref|ZP_08025848.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319979067|gb|EFW10585.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 111

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M R  +            R    +  R+IR+    T +E+ +    +  ++SE+E G+  
Sbjct: 1  MSRYSKGMEKKPRETALLRTELGDVLRDIRQRQGRTLREVSSEAQVSLGYLSEVERGQKE 60

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           + + +  ++H L  PLW +L
Sbjct: 61 ASSELLDAISHALGVPLWFVL 81


>gi|309774543|ref|ZP_07669569.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308917658|gb|EFP63372.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 71

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  ++Q+E+ N+ G  +  I  +E G+   +I   I +   L   L  L 
Sbjct: 5  KIKMARMELDMSQEELANKVGATRQTIGLIEAGRYNPSIKLCIKICIALHKHLDDLF 61


>gi|309776485|ref|ZP_07671468.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308915752|gb|EFP61509.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 303

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE+ ++Q+E+ +R   ++  +S+ E  +     + M+++ +     +  LL
Sbjct: 3  FGEKLQKLRKESGISQEELASRLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVSMDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum
          CFBP2957]
          Length = 201

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+  +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 20 VGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDFL 79


>gi|299142081|ref|ZP_07035215.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella oris C735]
 gi|298576543|gb|EFI48415.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella oris C735]
          Length = 103

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    +  RK  +LTQ+++    G  + +IS++E G S + +   + +A+ L 
Sbjct: 43 YAELLKEQRKMQRLTQQQLAEMIGKKREYISQIERGNSDMQLSTFLQIANALG 95


>gi|325678167|ref|ZP_08157797.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324110172|gb|EGC04358.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 221

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +   +         R +R    +TQK+    TG +QS++S LE G+ +     +I L   
Sbjct: 4  EKSQQYLKEVGERLRGVRLLMGITQKQAAEATGISQSFLSSLERGQKSACTAQIISLIRY 63

Query: 73 LDTP 76
             P
Sbjct: 64 YKVP 67


>gi|257438888|ref|ZP_05614643.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257198703|gb|EEU96987.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 99

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++RK+  +TQ+++      + + ++++ETG    +I+ +  L+  L+     LL
Sbjct: 8  FGGRIRDLRKKKGITQEQLSIMLNVSANHLAKVETGSRCCSIELLQDLSSCLNVRTDYLL 67


>gi|227508229|ref|ZP_03938278.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
          27305]
 gi|227192458|gb|EEI72525.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
          27305]
          Length = 174

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  +  R     +Q+++ ++    +  IS  E G S  ++ N+ +L+   D PL   +K
Sbjct: 9  SQLKKARIRKGYSQQQVADKLRVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVK 67


>gi|218290222|ref|ZP_03494376.1| transcriptional regulator of molybdate metabolism, XRE family
          [Alicyclobacillus acidocaldarius LAA1]
 gi|218239697|gb|EED06888.1| transcriptional regulator of molybdate metabolism, XRE family
          [Alicyclobacillus acidocaldarius LAA1]
          Length = 382

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RM F N  + +R+ A LT+ E+  R G     +  +E GK + +    + LA  L T + 
Sbjct: 28 RMKFPNAVKPLRELAGLTKSELARRVGITPQALGLIEQGKVSPSTHVALRLAKALGTTVE 87

Query: 79 KLLKP 83
           L  P
Sbjct: 88 SLFDP 92


>gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 125

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R +R+E KLTQ+E+  +    +  IS  E G  T + + +  LA   +     L
Sbjct: 6  VLGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGNRTPDTETLQKLADFFNVTTDYL 65

Query: 81 L 81
          L
Sbjct: 66 L 66


>gi|312126461|ref|YP_003991335.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776480|gb|ADQ05966.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 124

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R +  L+QKE+  + G +Q+ +S+LE+G     +  +  +A  L   L
Sbjct: 41 QYRIKNNLSQKELAQKLGISQAMVSKLESGDYNPTVKMLYEIAKKLGFEL 90


>gi|323527082|ref|YP_004229235.1| hypothetical protein BC1001_2760 [Burkholderia sp. CCGE1001]
 gi|323384084|gb|ADX56175.1| protein of unknown function DUF955 [Burkholderia sp. CCGE1001]
          Length = 386

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +  R  A L+Q+ +    G A++ +  +E GK  ++++ +   A  LD    +L
Sbjct: 11 ILGARLKAARVSASLSQEALAQTLGLARTTVVAIEAGKRKVSLEELRAFAEQLDVRESEL 70

Query: 81 L 81
          L
Sbjct: 71 L 71


>gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC
          51170]
 gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC
          51170]
          Length = 78

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK   L+Q  +  + G +++ I+++ETGK+  ++     +A+ LD  ++++ 
Sbjct: 3  NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALDVCIYQIF 60


>gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 223

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 7   DEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           D   L +    +R +       + +R+ + +T  ++  +TG + S +S LE G     ++
Sbjct: 25  DPEDLDNHEEIDRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAGLRRPTLE 84

Query: 65  NMIILAHTLDTPLWKLL 81
            ++ LA      L +L+
Sbjct: 85  QLLPLARAHGVTLDELV 101


>gi|255037817|ref|YP_003088438.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254950573|gb|ACT95273.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 109

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          F +NFR +R+ A L+Q+ +      + S I+ +E  K  ++I  +  LA+ L 
Sbjct: 27 FGSNFRKLREWAGLSQEALGASLNVSASVINRIENNKRRLDIQILQNLANALQ 79


>gi|255102244|ref|ZP_05331221.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
          Length = 141

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK  + TQ+E+  +   ++  I++ E+G+S  +I + I LA   +  L  L
Sbjct: 1  MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46]
 gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46]
          Length = 478

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 26/57 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +  T   
Sbjct: 7  KTYVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGV 63


>gi|257061063|ref|YP_003138951.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256591229|gb|ACV02116.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 173

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E  L +     R+      + +RK+  LTQ+++  + G  QSW+S+LE+  +    ++++
Sbjct: 24 ETQLIEKQEVFRISLTQAMKQLRKKVGLTQQQLAEKLGVTQSWVSKLESANNDHTFESVL 83

Query: 68 ILAHTLDTPLWKL 80
             + L  P +++
Sbjct: 84 AYLNGL-VPDFEI 95


>gi|163943351|ref|YP_001642581.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163865548|gb|ABY46606.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 64

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +RKE KL+Q+++      ++  I+ +E  K    ++    LA +L   + +L 
Sbjct: 5  IRILRKEKKLSQEDLAKLCHVSRQTINAIENNKYDPTLELAFNLAKSLGVTVDQLF 60


>gi|332877485|ref|ZP_08445232.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332684591|gb|EGJ57441.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 101

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N RKEA++TQ E+  R    +S+IS +E    T ++     + + L     +++KP
Sbjct: 45 NARKEAQMTQSELAERINATKSYISRIEKEMITPSVSTFYRIINALGMR-VEIVKP 99


>gi|315222118|ref|ZP_07864027.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315188744|gb|EFU22450.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 62

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R  R    L+Q E+  +TG ++  I+ +E  K    ++  I LA  L T L  L 
Sbjct: 2  NHVREFRNSLGLSQLELAKKTGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59


>gi|282933777|ref|ZP_06339130.1| XRE family transcriptional regulator [Lactobacillus jensenii
          208-1]
 gi|313472134|ref|ZP_07812626.1| helix-turn-helix domain-containing protein [Lactobacillus
          jensenii 1153]
 gi|239529503|gb|EEQ68504.1| helix-turn-helix domain-containing protein [Lactobacillus
          jensenii 1153]
 gi|281302079|gb|EFA94328.1| XRE family transcriptional regulator [Lactobacillus jensenii
          208-1]
          Length = 122

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78
          M      R+ RK  KLTQ+++   +G + ++IS +E  G   I+I  +  +A +L+    
Sbjct: 3  MCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTP 62

Query: 79 KLL 81
           L+
Sbjct: 63 SLI 65


>gi|254489741|ref|ZP_05102936.1| Cupin domain protein [Methylophaga thiooxidans DMS010]
 gi|224464826|gb|EEF81080.1| Cupin domain protein [Methylophaga thiooxydans DMS010]
          Length = 180

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          E  LT  E+  R   ++  +S++E G ++ +++ +  LA+ L   L +L 
Sbjct: 2  ENGLTIAEVSKRANVSRGMLSKIENGLTSPSLEKLEQLANALGVTLSRLF 51


>gi|160883333|ref|ZP_02064336.1| hypothetical protein BACOVA_01302 [Bacteroides ovatus ATCC 8483]
 gi|156111317|gb|EDO13062.1| hypothetical protein BACOVA_01302 [Bacteroides ovatus ATCC 8483]
          Length = 100

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           RK A+LTQ+E+  R G  +S+IS +E G +  ++     + + L 
Sbjct: 46 ARKNARLTQEELAKRIGANKSYISRIEKGITVPSVATFYRIINALG 91


>gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
          Length = 224

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   DA + ER+      R +R     T   +  R G ++S IS +E   ++     +  
Sbjct: 26 PTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDK 83

Query: 69 LAHTLDTPLWKLL 81
          LA  L   L  L 
Sbjct: 84 LAAGLGISLAGLF 96


>gi|126700737|ref|YP_001089634.1| putative transcriptional regulator [Clostridium difficile 630]
          Length = 144

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N +++RK  + TQ+E+  +   ++  I++ E+G+S  +I + I LA   +  L 
Sbjct: 2  KNMINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLD 61

Query: 79 KLL 81
           L+
Sbjct: 62 DLV 64


>gi|116671946|ref|YP_832879.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612055|gb|ABK04779.1| transcriptional regulator, XRE family [Arthrobacter sp. FB24]
          Length = 424

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    R  R E  LTQ E+     ++ S+IS LETG+     D +  LA  L+     L
Sbjct: 5  FGEKLRAERLERGLTQAELGKDL-YSPSYISLLETGRREPTADVIEELARRLELAPKAL 62


>gi|324325802|gb|ADY21062.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 403

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|319946413|ref|ZP_08020650.1| transcriptional regulator [Streptococcus australis ATCC 700641]
 gi|319747381|gb|EFV99637.1| transcriptional regulator [Streptococcus australis ATCC 700641]
          Length = 88

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 17 RERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R+      N +    R E  +TQ ++ +  G  +  I  +E GK    +   + +  TLD
Sbjct: 20 RKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLD 79

Query: 75 TPLWKLL 81
            L +L 
Sbjct: 80 KTLDQLF 86


>gi|317120864|ref|YP_004100867.1| hypothetical protein Tmar_0015 [Thermaerobacter marianensis DSM
          12885]
 gi|315590844|gb|ADU50140.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM
          12885]
          Length = 73

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N+  +RK    TQ ++    G +++  S+ E G     ID  I LA     P+ +L 
Sbjct: 4  ENWVQLRKARGWTQYDVARMLGISRARYSQYELGLRNPPIDVAIRLADLFGVPIQELF 61


>gi|307329866|ref|ZP_07609020.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884477|gb|EFN15509.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 140

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  LA  L      L
Sbjct: 9  LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67


>gi|296875924|ref|ZP_06899984.1| transcriptional regulator [Streptococcus parasanguinis ATCC
          15912]
 gi|296433086|gb|EFH18873.1| transcriptional regulator [Streptococcus parasanguinis ATCC
          15912]
          Length = 77

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 17 RERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R+      N +    R E  +TQ ++ +  G  +  I  +E GK    +   + +  TLD
Sbjct: 9  RKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLD 68

Query: 75 TPLWKLL 81
            L +L 
Sbjct: 69 KTLDQLF 75


>gi|295700971|ref|YP_003608864.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440184|gb|ADG19353.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 190

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          KRD+   +       ++  +  R +RK  + T  E     G ++ ++S++E G +T +I 
Sbjct: 2  KRDDRKSAAP-----LVMGSKIRALRKRLQRTLDETATAAGISKPFLSQVERGHATPSIS 56

Query: 65 NMIILAHTLDTPL 77
          ++  +A  L   +
Sbjct: 57 SLAGIAQALGVTM 69


>gi|295108110|emb|CBL22063.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 118

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  LTQ+E+ +    +   I+ +E G+   +   +  LA  L   L  L+
Sbjct: 9  LGQKMREARKKKDLTQQELADLNHVSVKQIASIEKGQINPSYLILKALAKVLPLSLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
 gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
          Length = 196

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R +  +T +++ N TGF+++ IS++E       I  +  +A+ L+  +
Sbjct: 9  GERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLNVKM 63


>gi|254819802|ref|ZP_05224803.1| transcriptional regulator, XRE family protein [Mycobacterium
          intracellulare ATCC 13950]
          Length = 138

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 30/58 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R+ R+ A+++ +++  ++G +  ++S++E G    + D +  +A  L      L
Sbjct: 23 GSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVL 80


>gi|254229181|ref|ZP_04922600.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. Ex25]
 gi|262395531|ref|YP_003287384.1| predicted transcriptional regulator [Vibrio sp. Ex25]
 gi|151938266|gb|EDN57105.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. Ex25]
 gi|262339125|gb|ACY52919.1| predicted transcriptional regulator [Vibrio sp. Ex25]
          Length = 207

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P     +      I   ++      ++IR +  +T +E   RTG A+S +S++E  + + 
Sbjct: 10 PSMTLAKEQNDQNIEPLKL--GQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 68 TFQAMQKLALGLQIDMPQLFEP 89


>gi|126173068|ref|YP_001049217.1| helix-turn-helix domain-containing protein [Shewanella baltica
          OS155]
 gi|125996273|gb|ABN60348.1| helix-turn-helix domain protein [Shewanella baltica OS155]
          Length = 367

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F       RK A L+   + N  G + + I + E G +  +  N++ LA  LD      
Sbjct: 1  MFAERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|317405899|gb|EFV86181.1| AroK1 protein [Achromobacter xylosoxidans C54]
          Length = 303

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 10 HLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
            +      R  F        R +R    +T+K +   TG ++  ++ LE G    +I  
Sbjct: 6  EDAAPTEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILV 65

Query: 66 MIILAHTLDTPLWKLL 81
          ++ +A   +  L +L+
Sbjct: 66 LLQIAKAFNCALAELV 81


>gi|300940966|ref|ZP_07155490.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 21-1]
 gi|300454290|gb|EFK17783.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 21-1]
          Length = 93

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  +  R+  KLT +E+ +RT   +S++S +E  +    I  +  ++  L  PL
Sbjct: 5  GSTIKLCREARKLTLQELSDRTDLTKSYLSRIENNQRDPTITALEKISLALHIPL 59


>gi|199597759|ref|ZP_03211186.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
 gi|199591375|gb|EDY99454.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
          Length = 99

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             + ++         R+ A L+Q+E+ N++G  ++ I+ +E G +  +I+ +  +A+ L
Sbjct: 32 KSEKSKLASAYAVLEARRNAGLSQQELANKSGVPKTTIARIERG-NNTSIETLTKIANAL 90

Query: 74 DTP 76
             
Sbjct: 91 GKQ 93


>gi|169633695|ref|YP_001707431.1| putative transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169152487|emb|CAP01455.1| putative transcriptional regulator [Acinetobacter baumannii]
          Length = 197

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R     T   +  R   ++S IS +E G+++     +  LA+ L+ PL ++  
Sbjct: 9  AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68


>gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis
          Bu]
          Length = 217

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D P  SD   R         R +R     T   +  R+G ++S IS +E G ++     +
Sbjct: 8  DAPADSDVNER----IARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVL 63

Query: 67 IILAHTLDTPLWKLL 81
            LA  L   L  L 
Sbjct: 64 DKLAAGLGVSLASLF 78


>gi|113460568|ref|YP_718632.1| transcriptional regulator [Haemophilus somnus 129PT]
 gi|112822611|gb|ABI24700.1| transcriptional regulator [Haemophilus somnus 129PT]
          Length = 146

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + IR   KLTQKE+   +G   + I   E G  + NI+ +  +A  L+  +  
Sbjct: 1  MISGKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISA 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|330961956|gb|EGH62216.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 180

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   +T + +  +TG  +S++S++E G +T +I   + LA   +  + +L  
Sbjct: 4  RLKILRKRLGMTLEVLAEKTGITKSYLSKVERGLNTPSIAAALKLAAAFNVSVEELFT 61


>gi|325263048|ref|ZP_08129783.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324031441|gb|EGB92721.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 118

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK  +LTQ+E+ + +  +   I+ +E GK   +   + +LA  L   L  L+
Sbjct: 9  LGQKMLEARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRVLAKVLHISLDTLI 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|312868567|ref|ZP_07728762.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
 gi|311095864|gb|EFQ54113.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
          Length = 204

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R++  LTQ ++ ++    +  IS  E GKS  ++  ++ L+      L  LL
Sbjct: 3  FSTQIKQQRQQLGLTQADVASQLFVTRQTISNWEQGKSYPDLSMLVKLSEVYQVSLDSLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|307824117|ref|ZP_07654344.1| plasmid maintenance system antidote protein, XRE family
          [Methylobacter tundripaludum SV96]
 gi|307734901|gb|EFO05751.1| plasmid maintenance system antidote protein, XRE family
          [Methylobacter tundripaludum SV96]
          Length = 84

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R IR+  +L+Q ++   TG  QS IS +E  K  + I+   ILA  L      L+
Sbjct: 15 VGESVRIIRELQELSQNQLAELTGIPQSTISAIEHDKINLGIERAKILAKALKCHPAVLV 74

Query: 82 KP 83
           P
Sbjct: 75 FP 76


>gi|302543174|ref|ZP_07295516.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302460792|gb|EFL23885.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 290

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+E  +T +E+      +QS IS LE G+ +I+  ++  L  T    
Sbjct: 9  VRRRRLGQELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKVE 68

Query: 77 LWKLL 81
             L+
Sbjct: 69 DKALV 73


>gi|296140142|ref|YP_003647385.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296028276|gb|ADG79046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 113

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDT 75
                 +RK   ++Q+++  R G  ++ IS +E   S+       ++  +  LA  LD 
Sbjct: 15 LAYRLLTLRKARGISQEKLAERAGLHRNQISNIERNVSSGDRFSDPHMSTLYRLAAALDV 74

Query: 76 PLWKLL 81
          P   LL
Sbjct: 75 PPALLL 80


>gi|295090185|emb|CBK76292.1| Predicted transcriptional regulators [Clostridium cf.
          saccharolyticum K10]
          Length = 118

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E        +  RKE  LTQ+E+ + +  +   I+ +E GK   +   +  LA  +   L
Sbjct: 5  ELKELGLKLKATRKEKGLTQQELSDISHVSTKQIANIERGKMNPSYLILKALAKVVPLSL 64

Query: 78 WKLLKP 83
            LL P
Sbjct: 65 DSLLAP 70


>gi|257791126|ref|YP_003181732.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317488144|ref|ZP_07946719.1| hypothetical protein HMPREF1023_00417 [Eggerthella sp. 1_3_56FAA]
 gi|257475023|gb|ACV55343.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316912772|gb|EFV34306.1| hypothetical protein HMPREF1023_00417 [Eggerthella sp. 1_3_56FAA]
          Length = 71

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+I     + +R+E  L+Q+      G  Q+ + ++E G+ ++ ID +  +A  LD  + 
Sbjct: 7  RIILGKTIKMLREEQHLSQRRFALMVGTNQTHLWQIECGQVSVGIDLLCRIADGLDIKVK 66

Query: 79 KLL 81
           L+
Sbjct: 67 DLI 69


>gi|253987632|ref|YP_003038988.1| phage n15 protein gp48 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779082|emb|CAQ82242.1| similar to protein gp48 from prophage n15 [Photorhabdus
          asymbiotica]
          Length = 99

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   ++ RK   LTQ+++  + G  +  IS +E GKS  N+D +   A  L 
Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAALG 89


>gi|229176556|ref|ZP_04303982.1| hypothetical protein bcere0006_55690 [Bacillus cereus MM3]
 gi|228606912|gb|EEK64308.1| hypothetical protein bcere0006_55690 [Bacillus cereus MM3]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 35/62 (56%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I  +  + +RK  KLTQK++   +  ++S +S++E G  +  I+ +  +A+ L T +  
Sbjct: 5  KIKGSYVKELRKSKKLTQKQLAELSQISESMVSKIELGVKSTKIETLKKIANALSTTMDD 64

Query: 80 LL 81
          L+
Sbjct: 65 LV 66


>gi|225021191|ref|ZP_03710383.1| hypothetical protein CORMATOL_01203 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305681443|ref|ZP_07404250.1| DNA-binding family protein [Corynebacterium matruchotii ATCC
          14266]
 gi|224945924|gb|EEG27133.1| hypothetical protein CORMATOL_01203 [Corynebacterium matruchotii
          ATCC 33806]
 gi|305659648|gb|EFM49148.1| DNA-binding family protein [Corynebacterium matruchotii ATCC
          14266]
          Length = 107

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P   + +L  R       R+ R +  +T +E+   +  +  ++SELE G+  ++ + 
Sbjct: 15 KRTPKTPEPLL--RQALGAALRSFRADKGITLRELAEISRVSPGYLSELERGRKEVSSEL 72

Query: 66 MIILAHTLDTPLWKLL 81
          +  + H L T +  +L
Sbjct: 73 LASVCHALGTSVSDVL 88


>gi|182417831|ref|ZP_02949145.1| HTH-type transcriptional regulator xre [Clostridium butyricum
          5521]
 gi|237668782|ref|ZP_04528766.1| transcriptional regulator, XRE family [Clostridium butyricum E4
          str. BoNT E BL5262]
 gi|182378294|gb|EDT75826.1| HTH-type transcriptional regulator xre [Clostridium butyricum
          5521]
 gi|237657130|gb|EEP54686.1| transcriptional regulator, XRE family [Clostridium butyricum E4
          str. BoNT E BL5262]
          Length = 111

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  LTQ+E+ N  G  ++ IS+ E  K   + +    LA   +  L  LL
Sbjct: 4  FGERLRQLRIEKNLTQEELANYFGLHKTRISQYELNKRQADDEMKKKLALYFNVSLDWLL 63


>gi|168178699|ref|ZP_02613363.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC
          2916]
 gi|182670340|gb|EDT82314.1| transcriptional regulator, XRE family [Clostridium botulinum NCTC
          2916]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R++ K+TQ E+  +T   QS +S++E GK  I   ++  +A  L   + +LL+
Sbjct: 4  GEKIRILREKYKITQYELSKKTNLTQSQVSKIEKGKRRITDVDLKEIAKALHVTIQELLE 63


>gi|329848452|ref|ZP_08263480.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
 gi|328843515|gb|EGF93084.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
          Length = 127

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R IR++  ++Q+ + +R G     + + E G + ++   ++ +A  L      LL
Sbjct: 2  GLNIRRIRRDLNMSQQVLADRIGLTFQQVQKYERGANRVSASKLVAIAKALGVSPASLL 60


>gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 209

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R+  K+TQK +          +S+ E  +S  +I  +I L++  +  + ++L
Sbjct: 4  LGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESNPDIQTLISLSNYFNVSVDEML 63


>gi|168181353|ref|ZP_02616017.1| MATE efflux family protein [Clostridium botulinum Bf]
 gi|182675343|gb|EDT87304.1| MATE efflux family protein [Clostridium botulinum Bf]
          Length = 147

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+IRK+   +  +I+  TG ++S ISELE  KS+   + +  +A  L+  +    
Sbjct: 3  LGEKIRSIRKKKGYSILQIKELTGLSKSTISELENDKSSPTAETLQKIATALNVHVSDFF 62


>gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016]
 gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 200

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N    +RK   ++Q E+  + G  Q  IS+ E G    + + + +L+   +  +  LL
Sbjct: 70  NRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSREPDTETLKLLSSIFNVSIDYLL 127



 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R +  +TQ+E+      + S I   E  + + +I+ + ++A         L
Sbjct: 1  MFGEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQNRRSPDIETLKLIADYFQCSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|30261146|ref|NP_843523.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|30254760|gb|AAP25009.1| DNA-binding protein [Bacillus anthracis str. Ames]
          Length = 73

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  R++   +Q ++  +   ++  +S+ ETGK+  +I+ +I L+      + +
Sbjct: 1  MIFSERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|88854989|ref|ZP_01129654.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1]
 gi|88815517|gb|EAR25374.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1]
          Length = 489

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           R      D  + + +      R +R +  LT  ++      A S +S +E GK  + + 
Sbjct: 3  PRTLSTADDEDMLDSLTVGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELKLS 62

Query: 65 NMIILAHTLDTPLWKLL 81
           +  LA   D  +  LL
Sbjct: 63 ELQKLARIFDVSVDDLL 79


>gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
 gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
          Length = 209

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + D+  R         + +R+   +T   +   TG + S +S LE G     ++ ++ LA
Sbjct: 1  MDDSTDRTLDAVGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAGLRRPTLEQLLPLA 60

Query: 71 HTLDTPLWKLL 81
                L  L+
Sbjct: 61 RAYGVTLDDLV 71


>gi|322390117|ref|ZP_08063652.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903]
 gi|321143244|gb|EFX38687.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903]
          Length = 77

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++ +  G  +  I  +E GK    +   + +  TLD  L +L 
Sbjct: 19 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 75


>gi|312868344|ref|ZP_07728544.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311096089|gb|EFQ54333.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 64

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++ +  G  +  I  +E GK    +   + +  TLD  L +L 
Sbjct: 6  KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 62


>gi|300717478|ref|YP_003742281.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299063314|emb|CAX60434.1| Transcriptional regulator [Erwinia billingiae Eb661]
          Length = 185

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  ++Q+ +   +G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLSEIRQQMGMSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 67

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ ++       QS   + E GK+ ++I+N   +A      +  LL
Sbjct: 3  NRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTNLSIENAKKVAKYFGVTIDYLL 60


>gi|229590309|ref|YP_002872428.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens
          SBW25]
 gi|229362175|emb|CAY49077.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens
          SBW25]
          Length = 235

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDT 75
          R      +   + R++A L+Q  +    G  +QS I   E      N+D++  +AH L  
Sbjct: 20 RSMKTLGSRIAHYREKAGLSQAALAKACGWKSQSRIGNYEKDAREPNLDDISKIAHELKI 79

Query: 76 PLWKLLKP 83
              LL P
Sbjct: 80 DPAALLLP 87


>gi|256851112|ref|ZP_05556501.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
 gi|260660536|ref|ZP_05861451.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
 gi|282932249|ref|ZP_06337693.1| XRE family transcriptional regulator [Lactobacillus jensenii
          208-1]
 gi|297205977|ref|ZP_06923372.1| XRE family transcriptional regulator [Lactobacillus jensenii
          JV-V16]
 gi|256616174|gb|EEU21362.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
 gi|260548258|gb|EEX24233.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
 gi|281303644|gb|EFA95802.1| XRE family transcriptional regulator [Lactobacillus jensenii
          208-1]
 gi|297149103|gb|EFH29401.1| XRE family transcriptional regulator [Lactobacillus jensenii
          JV-V16]
          Length = 122

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78
          M      R+ RK  KLTQ+++   +G + ++IS +E  G   I+I  +  +A +L+    
Sbjct: 3  MCLGAVIRDRRKAMKLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTP 62

Query: 79 KLL 81
           L+
Sbjct: 63 SLI 65


>gi|210630941|ref|ZP_03296686.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM
          13279]
 gi|210160256|gb|EEA91227.1| hypothetical protein COLSTE_00571 [Collinsella stercoris DSM
          13279]
          Length = 90

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D    ER +   +    R  A L+QKE+  R G   S +  LE G    ++  +  +AH 
Sbjct: 22 DEQQAEREVM-RSIVEARLAAGLSQKELAERCGMRASNLCRLENGNGNPSVATLAKVAHG 80

Query: 73 LDTPL 77
          L   L
Sbjct: 81 LGKNL 85


>gi|167757513|ref|ZP_02429640.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402]
 gi|237735075|ref|ZP_04565556.1| predicted protein [Mollicutes bacterium D7]
 gi|167702510|gb|EDS17089.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402]
 gi|229381851|gb|EEO31942.1| predicted protein [Coprobacillus sp. D7]
          Length = 153

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK+   +Q+E+ ++   ++  IS  E  ++   +D  + LA   +  L  L
Sbjct: 1  MLGEKLMRLRKKQGYSQQEVADKLSVSRQTISNWECDQALPAVDKAMELAQLYNISLDDL 60

Query: 81 LK 82
          ++
Sbjct: 61 ME 62


>gi|163759848|ref|ZP_02166932.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43]
 gi|162282806|gb|EDQ33093.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43]
          Length = 205

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R++R  + L  K++      ++S +S++ETG  + +I+ +  +   L+  +  L
Sbjct: 23 LIGARLRHMRIASGLKLKDVAAAADCSESMLSKVETGHVSPSINMLHRITKVLNVNISGL 82

Query: 81 LKP 83
            P
Sbjct: 83 FAP 85


>gi|157362947|ref|YP_001469714.1| XRE family transcriptional regulator [Thermotoga lettingae TMO]
 gi|157313551|gb|ABV32650.1| transcriptional regulator, XRE family [Thermotoga lettingae TMO]
          Length = 185

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R++R+  KLT +E+   +G     IS++E GK + ++  +  +   L   +  L++
Sbjct: 9  GEKIRSLRQSKKLTVRELAKLSGVTPGLISQIEHGKVSPSLSTLKAILSALGETIISLVE 68


>gi|254246958|ref|ZP_04940279.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|124871734|gb|EAY63450.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
          Length = 301

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 12  SDAILRERMI------FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
            D++ R+R +           R +R+EAK T  E+      +  ++S++E   + I++ +
Sbjct: 37  PDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSS 96

Query: 66  MIILAHTLDTPLWKLLK 82
           ++ +A  L  PL  L++
Sbjct: 97  LVNVAKALGVPLGTLIE 113


>gi|21225063|ref|NP_630842.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|4539174|emb|CAB39703.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 204

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LT +      G + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 16 VAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAELL 75


>gi|89100494|ref|ZP_01173355.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89084760|gb|EAR63900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 71

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 26/63 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+      G + S + E+E G      D ++ +AH L   +
Sbjct: 2  EAEKWGRRIRAFRKLKGFTQESFAKELGVSVSVLGEIERGNRMPADDFIVQVAHVLKISI 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|331001960|ref|ZP_08325480.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330411756|gb|EGG91161.1| hypothetical protein HMPREF0491_00342 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 73

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+++    G ++  I+ +E G     I   + + + LD  L +L 
Sbjct: 5  KLKSARAAKDLSQQQLAEIVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELF 61


>gi|325276538|ref|ZP_08142289.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324098326|gb|EGB96421.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 93

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             L   + F      +R+  +++Q ++   + F ++ IS LE G  +  +D +I L   
Sbjct: 6  KPPLSHNIAFGLVVAELRRGRRMSQDKLSEASNFDRTSISLLERGLRSPTLDTVICLCRA 65

Query: 73 LDTPLWKL 80
          L+ P  +L
Sbjct: 66 LEIPYSQL 73


>gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor
          owensensis OL]
 gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          owensensis OL]
          Length = 230

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    R +R++  L QK++  +   +   +S  E GK   +++ +   A   +     
Sbjct: 12 KLFGLRIRELREKQGLQQKDVAKKLNISNQALSNYELGKRMPSLEMVKKFADFFNVSTDY 71

Query: 80 LL 81
          L+
Sbjct: 72 LM 73


>gi|300115620|ref|YP_003762194.1| XRE family transcriptional regulator [Nitrosococcus watsoni
          C-113]
 gi|299541562|gb|ADJ29873.1| transcriptional regulator, XRE family [Nitrosococcus watsonii
          C-113]
          Length = 104

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +  N  RN RK+   TQKE+  ++G AQ+ IS LE GKS  + ID++  LA      +  
Sbjct: 1  MIGNIVRNRRKQLGWTQKELAEKSGVAQAQISRLEAGKSYNVTIDSLRNLAWAFGCSVID 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|296140867|ref|YP_003648110.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296029001|gb|ADG79771.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 183

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R  A  +  E+  R   A+S +S+LE G    +++ +  LA  L+ P  +LL
Sbjct: 10 AAGIQRERTRAGWSMAELARRANIAKSTLSQLEAGTGNPSVETLWALATALEIPFAQLL 68


>gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
          Length = 65

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK+  L+Q  +  + G A+  I+ +E  K   +++  + LAH L T L  L 
Sbjct: 2  NRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNSLF 59


>gi|197303199|ref|ZP_03168241.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC
          29176]
 gi|197297739|gb|EDY32297.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC
          29176]
          Length = 108

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 26/55 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              +  +  R    +TQ++       +  +IS+LE G S ++++ ++ ++   +
Sbjct: 6  KTLGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFN 60


>gi|172040548|ref|YP_001800262.1| putative transcriptional regulator ClgR [Corynebacterium
           urealyticum DSM 7109]
 gi|171851852|emb|CAQ04828.1| putative transcriptional regulator ClgR [Corynebacterium
           urealyticum DSM 7109]
          Length = 146

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           MP    DEP L       R       R+ R++   T +E+      +  ++SELE G+  
Sbjct: 49  MPMAPSDEPLL-------REALGATLRDTRRQTGFTLRELAKLANVSPGYLSELERGRKE 101

Query: 61  INIDNMIILAHTLDTP 76
           ++ + +  + H +   
Sbjct: 102 VSSELLASVCHAMGIS 117


>gi|167768955|ref|ZP_02441008.1| hypothetical protein ANACOL_00272 [Anaerotruncus colihominis DSM
          17241]
 gi|167668595|gb|EDS12725.1| hypothetical protein ANACOL_00272 [Anaerotruncus colihominis DSM
          17241]
          Length = 70

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I  NN    R +  L+Q+E+  ++G + S  +++E  +   ++  +  L+     P+ 
Sbjct: 4  KDILANNLLCFRSDNHLSQEELAWKSGLSVSGYTKIERAEIQSSLRTLDKLSQGTGLPVM 63

Query: 79 KLLKP 83
           LL P
Sbjct: 64 DLLTP 68


>gi|163858543|ref|YP_001632841.1| DNA-binding [Bordetella petrii DSM 12804]
 gi|163262271|emb|CAP44574.1| conserved hypothetical protein, DNA-binding [Bordetella petrii]
          Length = 94

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R +  L Q+ +    G  +S + ++E G     +  ++ +A  L+    +L+
Sbjct: 25 FGAAVRAARMQRGLAQETLAYLAGIERSHMGKIERGGHLPTLVLILRIAKALECSAAELI 84


>gi|27377565|ref|NP_769094.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27350709|dbj|BAC47719.1| bll2454 [Bradyrhizobium japonicum USDA 110]
          Length = 481

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR IR++  L+Q +I    G + S+++ +E  +  +    ++ LA T D  L
Sbjct: 7  KKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5]
 gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5]
          Length = 157

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
               +RK   LTQ+E+  +   ++  IS+ E+G++   ++ +I L+         LLKP
Sbjct: 5  EKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDYLLKP 64


>gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA]
 gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA]
          Length = 112

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                +R+E   +Q+E+  R G ++  +S+ E  +S+ +  N+I LA      
Sbjct: 16 AQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLIALAKLYGVS 69


>gi|260463544|ref|ZP_05811743.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
 gi|259030635|gb|EEW31912.1| transcriptional regulator, XRE family [Mesorhizobium
          opportunistum WSM2075]
          Length = 482

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ IF     R IR    LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  DQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVD 62

Query: 77 LWKL 80
            +L
Sbjct: 63 PHEL 66


>gi|251778028|ref|ZP_04820948.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082343|gb|EES48233.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 248

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 32/66 (48%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          LS   L +++      ++ R   K T + + +    ++S+I ++E+G+   + + +  +A
Sbjct: 3  LSKTDLGKKIKEARKLKSERSGKKYTGQNLADDLKLSRSYIGDIESGRKYPSYELLTAIA 62

Query: 71 HTLDTP 76
             + P
Sbjct: 63 DACEVP 68


>gi|228978563|ref|ZP_04138938.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
 gi|228781162|gb|EEM29365.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407]
          Length = 114

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E+ N+   ++S IS LE   +  ++D++  +A   +  +  LL
Sbjct: 4  FGENLKKFRNSHTLTQAELGNKIQLSRSQISNLENHFNEPDLDSLDRIASFFNVSIDALL 63


>gi|228472110|ref|ZP_04056876.1| helix-turn-helix domain protein [Capnocytophaga gingivalis ATCC
          33624]
 gi|228276313|gb|EEK15037.1| helix-turn-helix domain protein [Capnocytophaga gingivalis ATCC
          33624]
          Length = 125

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     +N+RK   L+Q+E+      +QS  + +E+G S      ++ L         +
Sbjct: 3  EIVGEKIKNLRKSKNLSQEEVAEYIHLSQSTYARMESGASNSWAGYILPLCDLFGIQPEE 62

Query: 80 LLK 82
          LLK
Sbjct: 63 LLK 65


>gi|227819893|ref|YP_002823864.1| XRE family transcriptional regulator [Sinorhizobium fredii
          NGR234]
 gi|227338892|gb|ACP23111.1| putative transcriptional regulator Xre familiy [Sinorhizobium
          fredii NGR234]
          Length = 201

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+ DE ++++A+  E M      R +RK   LT +++ +    +  ++S++E  ++ + I
Sbjct: 7  RRADEWNVAEAV--EEMAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPI 64

Query: 64 DNMIILAHTLDT 75
            +  ++ TL  
Sbjct: 65 GVLKKISDTLGV 76


>gi|149924176|ref|ZP_01912553.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149814977|gb|EDM74537.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 141

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +      R  R+  +LT K +  RT  + S +S++E  +S+ ++ ++  +A+ LD  + +
Sbjct: 77  LTIGKRIREFRRARELTLKHMSRRTNLSVSLLSQIERAESSASVSSLYKIANALDVRISE 136

Query: 80  LL 81
           L 
Sbjct: 137 LF 138


>gi|29376794|ref|NP_815948.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|256960853|ref|ZP_05565024.1| predicted protein [Enterococcus faecalis Merz96]
 gi|29344259|gb|AAO82018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|256951349|gb|EEU67981.1| predicted protein [Enterococcus faecalis Merz96]
          Length = 121

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               + R  R    LTQ+E+ +++G A   + ++E G+   + + +  L   L      
Sbjct: 7  KFLGRHIRAERVRCNLTQQELADQSGLAVKTVQDIEKGRKNPSYETLSRLIERLGISPNV 66

Query: 80 LLK 82
          L +
Sbjct: 67 LFQ 69


>gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 118

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RK     Q ++    G  +  IS  E G  T N+D+++ L   L     +LL
Sbjct: 9  GVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAELL 67


>gi|317403875|gb|EFV84348.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans
          C54]
          Length = 201

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           +A L +R+   +  + +R E   +  E+  R G +++ +S LE  + +     +  L  
Sbjct: 18 PEADLDQRL--ADRLKTLRVERGWSLDELAGRAGVSRATLSRLENAEVSPTASVLGKLCG 75

Query: 72 TLDTPLWKLLK 82
               + +L++
Sbjct: 76 AYGMTMSRLMR 86


>gi|311032135|ref|ZP_07710225.1| transcriptional regulator, XRE family protein [Bacillus sp.
          m3-13]
          Length = 64

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q E+    G ++  I  +E GK   ++   + +   L   L +L 
Sbjct: 5  KMKMARVEKDLSQDELAKIVGVSRQTIGLIELGKYNPSLSLCLSICKALSKTLDQLF 61


>gi|311104338|ref|YP_003977191.1| hypothetical protein AXYL_01132 [Achromobacter xylosoxidans A8]
 gi|310759027|gb|ADP14476.1| helix-turn-helix family protein 2 [Achromobacter xylosoxidans A8]
          Length = 101

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R    + Q+E+  + G  +S + ++E G+    +  ++ +A  L     +L+
Sbjct: 25 FGAAVRVARLTQGIAQEELAAKAGIERSHMGKIERGEHMPTLALILRIAAGLKLSAAELV 84


>gi|295094003|emb|CBK83094.1| nucleotide sugar dehydrogenase [Coprococcus sp. ART55/1]
          Length = 493

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 28/52 (53%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ ++ + TG  ++ IS +E      +I+ +  L+  L+  L ++ 
Sbjct: 17 RKEKGMTQAQLADATGINRALISRIEQKDFVPSIEQLESLSEVLNFDLTEMF 68


>gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039]
 gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039]
          Length = 145

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RKE  +T + +  +   ++  IS  E G +  +I+N+ +L+     PL  L 
Sbjct: 4  KLKRLRKEHGITHENLAEKLHVSRQTISNWENGNTLPDIENLKLLSQFYHIPLSYLF 60


>gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 77

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK   L+Q  +  + G +++ I+++ETGK+  ++     +A+ L   ++++ 
Sbjct: 3  NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCIYQIF 60


>gi|225388847|ref|ZP_03758571.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme
          DSM 15981]
 gi|225045122|gb|EEG55368.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme
          DSM 15981]
          Length = 201

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK+   T  ++   TG++  +IS+LE  +   ++  +  +A  L      L+
Sbjct: 6  NRIREERKKKGYTLAQVARETGYSIGYISQLERNQKEPSLAALRKIAACLGCSEVYLI 63


>gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM
          13279]
 gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM
          13279]
          Length = 222

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N + +RK+A +TQ E+  +   A+S I++ ETG S+  +  +  LA         +L
Sbjct: 15 QNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWSSPRMGMVQKLAGVFGVTSADML 72


>gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis
          subsp. cremoris MG1363]
 gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis
          subsp. cremoris NZ9000]
          Length = 107

 Score = 50.0 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RK   L+Q+E+      ++  IS+ ETGKS    D +I+L+   D  L  LLK
Sbjct: 7  IKENRKLKNLSQEELAKELHISRQSISKWETGKSLPTTDQLILLSEIFDCSLDTLLK 63


>gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316]
 gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316]
          Length = 183

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R+    +   +  +TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 74

Query: 82 KP 83
           P
Sbjct: 75 TP 76


>gi|206560913|ref|YP_002231678.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198036955|emb|CAR52867.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 94

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R R     +      R  F    R  R    L Q+ +  + G A+S + ++E G+    
Sbjct: 2  QRGRPAGTRTYESEPARA-FGVAVREARTAQGLAQEVLAEQAGIARSHMGKIERGEHMPT 60

Query: 63 IDNMIILAHTLD 74
          +  ++ +A  L 
Sbjct: 61 LVLILRIAKGLG 72


>gi|56965322|ref|YP_177054.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56911566|dbj|BAD66093.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 303

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RN+R +  ++Q+ I +    +QS IS++E GK   NI  +  +A  L  P+   L 
Sbjct: 6  GMEIRNLRMKLGMSQENISSSV-VSQSAISKIENGKYIPNIIVLEAIASKLGVPVDHFLT 64


>gi|89895494|ref|YP_518981.1| hypothetical protein DSY2748 [Desulfitobacterium hafniense Y51]
 gi|89334942|dbj|BAE84537.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 118

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STI 61
           R  D     D   +  +         RK  ++TQ ++  R G    ++S++ET      I
Sbjct: 34  RGDDMSKSWDINDKRFIQIGLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPI 93

Query: 62  NIDNMIILAHTLDTPLWKLLK 82
           ++  +  +A     P  K L+
Sbjct: 94  SLKTLFAIADLFHVPPHKFLE 114


>gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 91

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               N+RK+  L+Q +  N    ++  +S  E GKS  +++ +I ++      + +LL+
Sbjct: 4  GEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDELLR 63


>gi|315650099|ref|ZP_07903175.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
 gi|315487591|gb|EFU77898.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
          Length = 235

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R I  +  R  R+   LT +E+  R   +++ +S+ E G   +++D +  ++  L     
Sbjct: 6  RKI-GSLIRQFRQSKALTIEELAERINKSRATLSKYEKGDIVLDVDTLYDISDALGIQAE 64

Query: 79 KLL 81
          +LL
Sbjct: 65 QLL 67


>gi|284055750|pdb|3KXA|A Chain A, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
 gi|284055751|pdb|3KXA|B Chain B, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
 gi|284055752|pdb|3KXA|C Chain C, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
 gi|284055753|pdb|3KXA|D Chain D, Crystal Structure Of Ngo0477 From Neisseria Gonorrhoeae
          Length = 141

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              F ++R +   TQ E+    G  Q ++S +E  K ++    +  LA+ L     ++
Sbjct: 70  GETFVSLRXKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 127


>gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 215

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               N+RK+  L+Q +  N    ++  +S  E GKS  +++ +I ++      + +LL+
Sbjct: 4  GEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDELLR 63


>gi|222530280|ref|YP_002574162.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii
          DSM 6725]
 gi|312621353|ref|YP_004022966.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|222457127|gb|ACM61389.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          bescii DSM 6725]
 gi|312201820|gb|ADQ45147.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kronotskyensis 2002]
          Length = 124

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R +  L+QKE+  + G +Q+ +S+LE+G     +  +  +A  L   L
Sbjct: 41 QYRIKNNLSQKELAQKLGISQAMVSKLESGDYNPTVKMLYEIAKKLGFEL 90


>gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
 gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56']
          Length = 186

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R+   LTQ+++    G  ++  + LE+G +   +  +   A  L   + ++L
Sbjct: 11 LAKNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAANPTLGVLHRAAAALQVSIEEML 70


>gi|114883636|ref|YP_740326.1| XRE-family transcriptional regulator protein [Plasmid pLB1]
 gi|113734277|dbj|BAF30453.1| XRE-family transcriptional regulator protein [Plasmid pLB1]
          Length = 85

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                      N     K   +TQ E+  R+G A S IS +  G+    +  +  LA  
Sbjct: 7  KRTSPLMTQIGANIARELKNLGITQGELSERSGVAASHISYMVRGQGNPTLATLESLADV 66

Query: 73 LDTPLWKLL 81
              + +LL
Sbjct: 67 FRLSVVELL 75


>gi|78065731|ref|YP_368500.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77966476|gb|ABB07856.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 206

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          ++       D  + ER+      R++R     T   +  R+G ++S IS +E   ++   
Sbjct: 2  KESATAVADDTGINERI--ARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTA 59

Query: 64 DNMIILAHTLDTPLWKLL 81
            +  LA  L   L  L 
Sbjct: 60 VVLDKLAAGLGVSLAGLF 77


>gi|30260593|ref|NP_842970.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Ames]
 gi|47777813|ref|YP_022528.1| prophage lambdaba04, DNA-binding protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49183444|ref|YP_026696.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Sterne]
 gi|65317858|ref|ZP_00390817.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|254686819|ref|ZP_05150677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          CNEVA-9066]
 gi|254724894|ref|ZP_05186677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          A1055]
 gi|254738955|ref|ZP_05196657.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Western North America USA6153]
 gi|254756199|ref|ZP_05208228.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Vollum]
 gi|254762018|ref|ZP_05213867.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Australia 94]
 gi|30253961|gb|AAP24456.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Ames]
 gi|47551518|gb|AAT35262.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49177371|gb|AAT52747.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str.
          Sterne]
          Length = 114

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK   LTQ+++ ++   ++S I   ET +   +ID ++I+A   +  +  L+
Sbjct: 4  FGQILKKLRKSRGLTQEQLSHKLNLSRSQIKNWETDRYQPDIDTLVIIASFFNVSVDALI 63


>gi|332666442|ref|YP_004449230.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332335256|gb|AEE52357.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 190

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE  +  +E+ +++      +S +E  ++  ++  +  ++  L+ PL +L+
Sbjct: 9  VGRKIRQLRKERGMNLQEVSDKSDITAGLLSRIENFRTLPSLPVLHNISMALNVPLAELV 68


>gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp.
          dysgalactiae ATCC 27957]
          Length = 158

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++R    LTQ E     G +++ +S  E G ST++ + +  +    +     +
Sbjct: 1  MIGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|254719638|ref|ZP_05181449.1| hypothetical protein Bru83_08855 [Brucella sp. 83/13]
 gi|265984647|ref|ZP_06097382.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306837728|ref|ZP_07470596.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653]
 gi|264663239|gb|EEZ33500.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306407184|gb|EFM63395.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653]
          Length = 470

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFTGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|257066786|ref|YP_003153042.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256798666|gb|ACV29321.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 292

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
          ER  F      IR+   L Q ++      ++  I  LE G+  + ++D++I L+   D  
Sbjct: 4  ERKEFGKKLIEIRERKGLRQADVAELINLSERSIGRLERGEIESASVDSLIELSKIYDLD 63

Query: 77 LWKLLK 82
          +  L K
Sbjct: 64 ILSLYK 69


>gi|227821998|ref|YP_002825969.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234]
 gi|227340998|gb|ACP25216.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234]
          Length = 244

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 4   RKRDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           R         AI   R         +  R  RK+  +T  ++   T  +   +S++E G 
Sbjct: 34  RVAPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVSDVAAATDISVGMLSKIENGN 93

Query: 59  STINIDNMIILAHTLDTPLWKLLK 82
           ++ ++  +  LA  L  P+    +
Sbjct: 94  TSPSLTTLQTLARALGVPITSFFR 117


>gi|297204985|ref|ZP_06922381.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16]
 gi|297149563|gb|EFH29860.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16]
          Length = 136

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +N+R+   L+Q+E+ +R   ++  IS+ E G S  +I+ +  L+      L  L+
Sbjct: 6  ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYLV 63


>gi|169334849|ref|ZP_02862042.1| hypothetical protein ANASTE_01255 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257587|gb|EDS71553.1| hypothetical protein ANASTE_01255 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 371

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 33/52 (63%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R+E KLTQ+++ N  G +++ +S+ ETG S  +I+ +  LA   +  L +LL
Sbjct: 14 RREKKLTQEDVANYMGVSKASVSKWETGGSYPDIELLPKLATFYNISLDELL 65


>gi|118587212|ref|ZP_01544640.1| transcriptional regulator, helix-turn-helix XRE-family
          [Oenococcus oeni ATCC BAA-1163]
 gi|118432354|gb|EAV39092.1| transcriptional regulator, helix-turn-helix XRE-family
          [Oenococcus oeni ATCC BAA-1163]
          Length = 199

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F     + R+E  +TQ ++      ++  +S  E GK+  ++D ++ L+   D  L  
Sbjct: 8  MVFSEIISSKRRELGMTQDQVAELLHVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 67

Query: 80 LLK 82
          L+K
Sbjct: 68 LIK 70


>gi|86138335|ref|ZP_01056909.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85824860|gb|EAQ45061.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 207

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 5  KRDEPHLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +    ++ A   ER           R +RK    T +   N+ G A+S +S++E G+ +
Sbjct: 6  PKSLITIARANGEEREAEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMS 65

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
             + +  LA  L   + +L  P
Sbjct: 66 PTYEALKKLAVGLQISVPQLFTP 88


>gi|296117700|ref|ZP_06836284.1| putative transcription regulator [Corynebacterium ammoniagenes
          DSM 20306]
 gi|295969431|gb|EFG82672.1| putative transcription regulator [Corynebacterium ammoniagenes
          DSM 20306]
          Length = 121

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R  R +  +T +E+      +  ++SELE G+  ++ + +  + H L
Sbjct: 28 PEPLLREALGLTLRAFRADKGVTLRELAASAHVSPGYLSELERGRKEVSSEMLAAVCHAL 87

Query: 74 DTPLWKLL 81
          +  +  +L
Sbjct: 88 EVSVSDVL 95


>gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 345

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  RKE+  TQ+E+ NR G     +++ ETG S  +I+ +  +A  L   L  LL
Sbjct: 4  GNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDTLL 62


>gi|257438852|ref|ZP_05614607.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii
          A2-165]
 gi|257198667|gb|EEU96951.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii
          A2-165]
          Length = 381

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R+   LTQ E+      +   IS+ ET K   +I  +  LA  L   + +L++
Sbjct: 7  GSTIRQLREAKGLTQAELAGTLSVSAKTISKWETAKGLPDISLLEPLAAALGVSVLELMQ 66


>gi|300022307|ref|YP_003754918.1| XRE family transcriptional regulator [Hyphomicrobium
          denitrificans ATCC 51888]
 gi|299524128|gb|ADJ22597.1| transcriptional regulator, XRE family [Hyphomicrobium
          denitrificans ATCC 51888]
          Length = 218

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 2  PRRKRDEPHLSD----AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          P  ++  P L+D    A L          +  R EA LT  ++    G + + +S +E G
Sbjct: 13 PAARKPTPDLADNRDFANLPLESRIGAVIKRRRAEANLTLADLSAGAGLSSAMLSRIENG 72

Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82
           +  ++D +  L   +   L  L K
Sbjct: 73 MAMASLDALERLCAAVGIGLGDLFK 97


>gi|261415339|ref|YP_003249022.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
          subsp. succinogenes S85]
 gi|261371795|gb|ACX74540.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
          subsp. succinogenes S85]
          Length = 78

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    +  R++  ++Q+++ N     +++I  +E G+  I+    I+L   L+  +  L
Sbjct: 9  FGLLVKKAREKKCISQEQLGNAVEMHKNYIGMIERGERNISFRKAIVLIQYLNINIMDL 67


>gi|146281047|ref|YP_001171200.1| Cro/CI family transcriptional regulator [Pseudomonas stutzeri
          A1501]
 gi|145569252|gb|ABP78358.1| transcriptional regulator, Cro/CI family [Pseudomonas stutzeri
          A1501]
          Length = 75

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK    +Q  +       +S++  +E G+  I ++ +  +A TL+     
Sbjct: 6  KALGGKIREQRKARGFSQDALALACKVDRSYMGRIERGEVNITVEKLYRIAWTLECDPKC 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|322376567|ref|ZP_08051060.1| conserved domain protein [Streptococcus sp. M334]
 gi|321282374|gb|EFX59381.1| conserved domain protein [Streptococcus sp. M334]
          Length = 73

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++RK+  LTQK+I     F  S  +++E G+  +  D ++ L++  D     LL
Sbjct: 3  RRLRDLRKDHDLTQKQIAKILSFTNSAYAKIERGEHALTADVLVTLSNFYDVSTDYLL 60


>gi|332653789|ref|ZP_08419533.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332516875|gb|EGJ46480.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 182

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N ++ RK   L+Q+E+  +    +  +S+ E G S  +   +I LA  LDT +  L
Sbjct: 1  MLSENLKHFRKAKGLSQEELAIKLHIVRQTVSKWEKGLSVPDSGMLIRLAEALDTSVTAL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 74

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ R +R     +TQ ++  R G  +  +  +E G+ + +++    +AH    PL ++ +
Sbjct: 9  NSLRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRYSPSLEMAFQIAHVFGVPLEEVFQ 68


>gi|261250781|ref|ZP_05943355.1| predicted transcriptional regulator [Vibrio orientalis CIP
          102891]
 gi|260937654|gb|EEX93642.1| predicted transcriptional regulator [Vibrio orientalis CIP
          102891]
          Length = 207

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      + IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGERIKTIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|254774923|ref|ZP_05216439.1| hypothetical protein MaviaA2_09650 [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 189

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           LT +E+  R G   S +S LE+GK  + +D++  LA  L     +LL+P
Sbjct: 23 GLTLQEVGARAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQP 72


>gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral
          taxon 786 str. D14]
 gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral
          taxon 786 str. D14]
          Length = 290

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       +  R E  +T +E+ ++ G   S +S++E G  +I  +N+  ++      + 
Sbjct: 5  KKALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSVSITSENLFAISEAFGVSVD 64

Query: 79 KLLK 82
           LL 
Sbjct: 65 WLLT 68


>gi|167920201|ref|ZP_02507292.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215]
          Length = 195

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  L +
Sbjct: 8  ARRVRALRDLRGYSLDALAERSKVSRSNISLIEHAQSNPTAVVLERLANALGVSLASLFE 67


>gi|154503168|ref|ZP_02040228.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC
          29149]
 gi|153796162|gb|EDN78582.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC
          29149]
          Length = 154

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 35/61 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R++ KL+Q+E+ ++    +  IS  E GK+  +++++++L+   +T L  L+
Sbjct: 3  VGKQIKKFRQDLKLSQEELASKIFVTRQTISNWENGKNYPDVNSLVMLSQLFNTSLDILV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|124383500|ref|YP_001028680.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|124291520|gb|ABN00789.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
          Length = 195

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +       +R     +   +  R+  ++S IS +E  +S      +  LA+ L   L  
Sbjct: 5  QLIARRVCALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSLAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|312862584|ref|ZP_07722825.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|311101844|gb|EFQ60046.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
          Length = 60

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            ++ R    LTQ+ + +  G ++  IS +E G     +D  I +  TLD
Sbjct: 5  KLKSARVAKDLTQQGLADAIGVSRQTISPIEKGDYNPTMDLYIAICKTLD 54


>gi|293607057|ref|ZP_06689400.1| DNA-binding/shikimate kinase domain protein [Achromobacter
          piechaudii ATCC 43553]
 gi|292814547|gb|EFF73685.1| DNA-binding/shikimate kinase domain protein [Achromobacter
          piechaudii ATCC 43553]
          Length = 302

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 11 LSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           +      R  F        R +R    +T+K +   TG ++  ++ LE G    +I  +
Sbjct: 6  DAAPSEPRREAFLVALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVL 65

Query: 67 IILAHTLDTPLWKLL 81
          + +A   +  L +L+
Sbjct: 66 LQIARAFNCALAELV 80


>gi|258651084|ref|YP_003200240.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258554309|gb|ACV77251.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 162

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + +L          R  R  A+++ + +  + G +  ++S++E G    + + +  +A  
Sbjct: 6  NPVLTPVRDLGEFIREQRLAAQISLRGLAAKAGVSNPYLSQVERGLRRPSAEILAHIAQG 65

Query: 73 LDTPLWKLL 81
          L   +  +L
Sbjct: 66 LSISVETML 74


>gi|284034061|ref|YP_003383992.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813354|gb|ADB35193.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R +  L+   +  R+G +++ IS++E G++      +  L+  L   L +L+
Sbjct: 9  LAATLQAARVDRNLSINALAERSGVSRAMISKIERGEAQPTAVLLGRLSGALGLTLSELV 68


>gi|227549953|ref|ZP_03980002.1| XRE family transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227077969|gb|EEI15932.1| XRE family transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 436

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R++  LTQ ++  R G + S++++LE  +  + +  ++ L+       
Sbjct: 10 GGRIRTVRRDNDLTQMDMAQRLGISTSYLNQLENNQRPLTVSVLVELSRAFGLDP 64


>gi|224024015|ref|ZP_03642381.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM
          18228]
 gi|224017237|gb|EEF75249.1| hypothetical protein BACCOPRO_00732 [Bacteroides coprophilus DSM
          18228]
          Length = 106

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           RN R    LTQ+E+  R G  ++ IS++E GK  + I  +  +   L      +LK
Sbjct: 12 IRNERLRKGLTQEELGERVGVGKAQISKIERGK-GLTIKTVTKVLDALGMSASVVLK 67


>gi|167561891|ref|ZP_02354807.1| DNA-binding regulatory protein [Burkholderia oklahomensis EO147]
 gi|167569142|ref|ZP_02362016.1| DNA-binding regulatory protein [Burkholderia oklahomensis C6786]
          Length = 81

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RKE  ++Q+ + +     +S + ++E G+  +   N++ +A  L     +LL
Sbjct: 17 LGAAIRARRKELVMSQEALADFAELDRSHMGKIERGERNVTFMNIVRIARALQLLPSELL 76

Query: 82 K 82
          +
Sbjct: 77 R 77


>gi|149916281|ref|ZP_01904801.1| hypothetical protein RAZWK3B_11842 [Roseobacter sp. AzwK-3b]
 gi|149809735|gb|EDM69587.1| hypothetical protein RAZWK3B_11842 [Roseobacter sp. AzwK-3b]
          Length = 113

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R++   N  R  R+    TQ  +  +    +  + E+E G+ T ++  +  LA  L  
Sbjct: 48  VNRLLNGENALRVYRELRGYTQAALAEKADVNRVTVGEIEIGRKTGSVKTLRKLADALAV 107

Query: 76  PLWKLL 81
            +  L+
Sbjct: 108 TVDDLI 113


>gi|29830326|ref|NP_824960.1| DNA-binding protein [Streptomyces avermitilis MA-4680]
 gi|29607437|dbj|BAC71495.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680]
          Length = 285

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  DPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|266625750|ref|ZP_06118685.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288862345|gb|EFC94643.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 68

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN  N RK   L+Q+ +  + G ++  IS+ ET ++  +I     LA      L +
Sbjct: 1  MSLGNNLFNARKGKGLSQEVVAEKLGVSRQTISKWETDETLPDIQQSKKLAVLYGLTLDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          U0317]
 gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          U0317]
          Length = 234

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F  N + +R++  + Q+E+  + G  + S ISE E GK T  +  +  +A   +  +  
Sbjct: 1  MFAENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYTPKLKTLNEIAKIFNVDIDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LM 62


>gi|227833331|ref|YP_002835038.1| putative transcription regulator [Corynebacterium aurimucosum
          ATCC 700975]
 gi|227454347|gb|ACP33100.1| putative transcription regulator [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 124

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
                  + +L  R       R  R +  +T +E+ +    +  ++SELE G+  ++ +
Sbjct: 24 PAQSTRTPEPLL--REALGLTLRAFRADKGVTLRELASVARVSPGYLSELERGRKEVSSE 81

Query: 65 NMIILAHTLDTPLWKLL 81
           +  + H LD  +  +L
Sbjct: 82 LLASVCHALDVSVSDVL 98


>gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662]
 gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662]
          Length = 239

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N    RKE   +Q+E+ NR   ++  +S+ E G +T  ++ ++ L+      + +L+
Sbjct: 3  FYKNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTTPEMNKLMELSRIFQVSIDELV 62


>gi|163838971|ref|YP_001623376.1| Cro/CI family transcriptional regulator [Renibacterium
          salmoninarum ATCC 33209]
 gi|162952447|gb|ABY21962.1| transcriptional regulator, Cro/CI family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 191

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P   +    +     +  R  R+  +LT + +   TG  + ++S +E   ++ ++ +
Sbjct: 2  KALPAEPNQGPVQ---IGSRIRAARQAQRLTIEHVAEATGLTKGFLSRVERDFTSPSVAS 58

Query: 66 MIILAHTLDTPLWKLL 81
          ++ L   L   +  L 
Sbjct: 59 LVTLCEVLAISIGDLF 74


>gi|160939733|ref|ZP_02087080.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437167|gb|EDP14932.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC
          BAA-613]
          Length = 185

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK+   +Q+ +  +   ++  IS+ E G+S  + +N+I L+      +  
Sbjct: 1  MTFGEKLKFLRKQKGFSQERLSQQLTVSRQAISKWELGESLPDTENVIQLSKLFSVSIDF 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|221064694|ref|ZP_03540799.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
 gi|220709717|gb|EED65085.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R    + Q E  +  G A+S + ++E G+    +  ++ ++  L     +L+
Sbjct: 25 FGQAVRAARLAQGVAQDEFASMAGIARSHMGKIERGEHMPTLALILKISAALSISAAELM 84


>gi|291521205|emb|CBK79498.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 111

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 14 AILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
              ER +      +  R    + Q E+  R   + + IS +E G     +++ I +   
Sbjct: 2  KNENERFVEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDV 61

Query: 73 LDTPLWKLL 81
          LD     LL
Sbjct: 62 LDVTPDYLL 70


>gi|227486509|ref|ZP_03916825.1| helix-turn-helix [Anaerococcus lactolyticus ATCC 51172]
 gi|227235512|gb|EEI85527.1| helix-turn-helix [Anaerococcus lactolyticus ATCC 51172]
          Length = 291

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPL 77
          R  F      IR+   L Q ++ + +  +Q  +  LE G+  + ++D+++ L+   D  +
Sbjct: 5  RKEFGKKLIEIREIKGLRQADVADLSSLSQRTVGRLERGEIESASVDSLVELSKVYDIDI 64

Query: 78 WKLLK 82
            L K
Sbjct: 65 LSLYK 69


>gi|213019778|ref|ZP_03335581.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
 gi|212994608|gb|EEB55253.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
          Length = 306

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R+ R     TQK++  + G     I + E G   I+I  +  LA  L T    
Sbjct: 14 KVVGQKVRSCRIAKGYTQKDLAKKIGTTYQVILQYEKGTRRISITKLYELAEALSTTARD 73

Query: 80 L 80
          L
Sbjct: 74 L 74



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQ+++ ++ G     I E E G++ ++++ +  +A  L   +  LL
Sbjct: 167 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAKVLLINITDLL 226


>gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1]
 gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1]
          Length = 509

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++ +  G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|163757965|ref|ZP_02165053.1| transcriptional regulator, XRE family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284254|gb|EDQ34537.1| transcriptional regulator, XRE family protein [Hoeflea
           phototrophica DFL-43]
          Length = 231

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           P  K D      ++  +        +  R EA +TQ  +    G  ++ I  LE G+ + 
Sbjct: 147 PPAKPDTTQTIFSVAADPKEIGAKLKAARLEAGVTQAVVAEAMGTKENAIRRLERGEHSP 206

Query: 62  NIDNMIILAHTLD 74
           +ID +   A  + 
Sbjct: 207 SIDTIRKYAEAIG 219


>gi|114770344|ref|ZP_01447882.1| transcriptional regulator, putative [alpha proteobacterium
          HTCC2255]
 gi|114549181|gb|EAU52064.1| transcriptional regulator, putative [alpha proteobacterium
          HTCC2255]
          Length = 432

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RK  +LTQK++    G + S+++ +E  +  I    +  +A  L     +L
Sbjct: 5  LLGTRIRENRKALRLTQKDLAKVAGISASYLNLIEHNRRGIAGKTLNTIARALSVEPSEL 64


>gi|296156536|ref|ZP_06839374.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893135|gb|EFG72915.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 183

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK+  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|77166000|ref|YP_344525.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|76884314|gb|ABA58995.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC
           19707]
          Length = 165

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R++   N  +  R    LTQ  +  +   +QS+++ +E G+    +  +  +A  L  
Sbjct: 92  VKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVKALKQIAKVLGV 151

Query: 76  PLWKLL 81
            +  L+
Sbjct: 152 DIDDLV 157


>gi|52081992|ref|YP_080783.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580]
 gi|52787379|ref|YP_093208.1| Slr [Bacillus licheniformis ATCC 14580]
 gi|319647856|ref|ZP_08002074.1| slr protein [Bacillus sp. BT1B_CT2]
 gi|52005203|gb|AAU25145.1| transcriptional regulator Slr [Bacillus licheniformis ATCC 14580]
 gi|52349881|gb|AAU42515.1| Slr [Bacillus licheniformis ATCC 14580]
 gi|317390197|gb|EFV71006.1| slr protein [Bacillus sp. BT1B_CT2]
          Length = 152

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     R  RK    +  ++ +  G ++S++S++E G     +++ +  ++  L   L +
Sbjct: 1  MIGRVIRMYRKRKGYSINQLADIAGVSKSYLSKIERGVHRNPSVEFLKKISRALKVELKE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|325264849|ref|ZP_08131577.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324029838|gb|EGB91125.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 538

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +    +RK  K++Q+++      ++  + + E G S  ++DN++ +A   D  L  L
Sbjct: 1  MLADKIGKLRKLRKISQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAEYFDVSLDYL 60

Query: 81 L 81
          +
Sbjct: 61 I 61


>gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 199

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79


>gi|295103897|emb|CBL01441.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 65

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ  +    G ++  I+ +E G+    I+    +   LD  L +L 
Sbjct: 6  KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILDKTLDELF 62


>gi|294790069|ref|ZP_06755253.1| toxin-antitoxin system, antitoxin component, Xre family
          [Simonsiella muelleri ATCC 29453]
 gi|294481992|gb|EFG29735.1| toxin-antitoxin system, antitoxin component, Xre family
          [Simonsiella muelleri ATCC 29453]
          Length = 88

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R  AK+TQ+ +    G  ++ +S +E G++  + ++++ +A   +  L
Sbjct: 4  LGEWVKEARTSAKMTQESLGFELGMTKANVSNMEKGRTNPSFEHILKIAQITNMEL 59


>gi|256160334|ref|ZP_05458027.1| hypothetical protein BcetM4_15110 [Brucella ceti M490/95/1]
 gi|256255538|ref|ZP_05461074.1| hypothetical protein BcetB_14887 [Brucella ceti B1/94]
 gi|261222746|ref|ZP_05937027.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265998708|ref|ZP_06111265.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260921330|gb|EEX87983.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262553332|gb|EEZ09166.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 470

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM
          12042]
 gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM
          12042]
          Length = 400

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +RK   LTQ+++ ++       IS  E G+    I  +  LA +L     ++L
Sbjct: 7  GKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEGYPEITLLPKLADSLGVTTDEIL 65


>gi|218670812|ref|ZP_03520483.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 96

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R++R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM
          13279]
 gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM
          13279]
          Length = 169

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D  + E   F +   ++R++A  +Q+++ +  G ++  IS+ E  +    +DN++ L+  
Sbjct: 35 DDAMDEATKFADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLSQI 94

Query: 73 LDTP 76
              
Sbjct: 95 YRVS 98


>gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
          Length = 185

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum
          SI]
 gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 355

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R+ A L+ +E+ NR G +   IS+ E G    +   ++ LA  L   +   
Sbjct: 1  MVGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYF 60

Query: 81 LK 82
           +
Sbjct: 61 FR 62


>gi|187923443|ref|YP_001895085.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187714637|gb|ACD15861.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 191

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  R +R+    T  E+    G ++ ++S++E G +T +I +++ +A  L  
Sbjct: 16 GSKIRALRQRLSRTLDEVATTAGISKPFLSQVERGHATPSITSLVGIARALGV 68


>gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
 gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC
          2396]
          Length = 106

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWK 79
          +     + +RK+  LT +++  +TG  +S+I E+E  G    + + + ++A  LD     
Sbjct: 4  LLGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKLTLIAKALDVTTEF 63

Query: 80 LL 81
          L+
Sbjct: 64 LV 65


>gi|331270832|ref|YP_004397269.1| putative DNA-binding protein [Clostridium botulinum BKT015925]
 gi|329127550|gb|AEB77493.1| putative DNA-binding protein [Clostridium botulinum BKT015925]
          Length = 197

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 19 RMIFVNNFRNIR------KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  F    +  R         + TQ+ + +    +QS+I ++E+G++  +   +  +A  
Sbjct: 22 KKKFGQLLKEARNFKSDIIGKRYTQRMLADDINRSQSYIGDIESGRTYPSFSTLNDIAEA 81

Query: 73 LDTP 76
             P
Sbjct: 82 CGVP 85


>gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 174

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  RK   L+Q E+ NR G     + + E+G+   +I  +  +A+ L+    +L+
Sbjct: 8  GNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGVLNEIANNLNISPAELI 66


>gi|332855318|ref|ZP_08435823.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332871653|ref|ZP_08440126.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|332727542|gb|EGJ58966.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332731343|gb|EGJ62638.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           IRK  +++Q E+    G + S++SE+E+GK    ++ +   +   D P+  L+
Sbjct: 8  AIRKYHRISQTELSQSLGISNSYLSEIESGKKKPTLELLDKYSEYFDIPVSSLM 61


>gi|284802768|ref|YP_003414633.1| hypothetical protein LM5578_2524 [Listeria monocytogenes 08-5578]
 gi|284995910|ref|YP_003417678.1| hypothetical protein LM5923_2475 [Listeria monocytogenes 08-5923]
 gi|284058330|gb|ADB69271.1| hypothetical protein LM5578_2524 [Listeria monocytogenes 08-5578]
 gi|284061377|gb|ADB72316.1| hypothetical protein LM5923_2475 [Listeria monocytogenes 08-5923]
          Length = 83

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ IR +  LTQKE+  + G A+  I ++E G+   +I+  + ++  L+T +  + 
Sbjct: 5  FKLIRNKNGLTQKELAEKVGLAEISIRKIENGERDPSINTAVRISKILNTKMEIIF 60


>gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24]
          Length = 202

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+   LT  ++   TG + S +S LE+G+    + +++ LA     PL +L+
Sbjct: 15 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 74


>gi|23502476|ref|NP_698603.1| Cro/CI family transcriptional regulator [Brucella suis 1330]
 gi|148559184|ref|YP_001259476.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC
          25840]
 gi|161619553|ref|YP_001593440.1| hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365]
 gi|163843861|ref|YP_001628265.1| hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445]
 gi|254702330|ref|ZP_05164158.1| hypothetical protein Bsuib55_15923 [Brucella suis bv. 5 str. 513]
 gi|254704859|ref|ZP_05166687.1| hypothetical protein Bsuib36_13258 [Brucella suis bv. 3 str. 686]
 gi|254710644|ref|ZP_05172455.1| hypothetical protein BpinB_10311 [Brucella pinnipedialis B2/94]
 gi|254714828|ref|ZP_05176639.1| hypothetical protein BcetM6_16109 [Brucella ceti M644/93/1]
 gi|254717885|ref|ZP_05179696.1| hypothetical protein BcetM_16061 [Brucella ceti M13/05/1]
 gi|256032137|ref|ZP_05445751.1| hypothetical protein BpinM2_16082 [Brucella pinnipedialis
          M292/94/1]
 gi|256061658|ref|ZP_05451797.1| hypothetical protein Bneo5_15035 [Brucella neotomae 5K33]
 gi|256370026|ref|YP_003107537.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|260565903|ref|ZP_05836373.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|261219732|ref|ZP_05934013.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261318215|ref|ZP_05957412.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261322622|ref|ZP_05961819.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325667|ref|ZP_05964864.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752894|ref|ZP_05996603.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261755553|ref|ZP_05999262.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265989247|ref|ZP_06101804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|23348469|gb|AAN30518.1| transcriptional regulator, Cro/CI family [Brucella suis 1330]
 gi|148370441|gb|ABQ60420.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC
          25840]
 gi|161336364|gb|ABX62669.1| Hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365]
 gi|163674584|gb|ABY38695.1| Hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445]
 gi|256000189|gb|ACU48588.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|260155421|gb|EEW90501.1| transcriptional regulator [Brucella suis bv. 4 str. 40]
 gi|260924821|gb|EEX91389.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261295312|gb|EEX98808.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261297438|gb|EEY00935.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261301647|gb|EEY05144.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261742647|gb|EEY30573.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261745306|gb|EEY33232.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|264661444|gb|EEZ31705.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 470

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|68499972|gb|AAY97915.1| TrbA [Plasmid pMCBF1]
 gi|133711724|gb|ABO36544.1| TrbA protein [uncultured bacterium pMCBF6]
          Length = 104

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +T++E+  R+G + S++S+L TGK   ++  M  +A  LD PL  LL+
Sbjct: 1  MTKQELSERSGVSISFLSDLTTGKGNPSLKVMEAVAKALDVPLPLLLE 48


>gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1]
          Length = 153

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  + +R+E  ++Q ++ N  G  +  +S  E GK    ++    LA   +  +  L
Sbjct: 2  NRIKQLREEKGVSQSDVANAVGITRQAVSLYEQGKRAPKLEIWQKLADLFEVSVPYL 58


>gi|237734898|ref|ZP_04565379.1| transcriptional regulator [Mollicutes bacterium D7]
 gi|229382226|gb|EEO32317.1| transcriptional regulator [Coprobacillus sp. D7]
          Length = 71

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N R    R    +TQK++ +  G ++  ++ +E G     +   I +   L+  L +L
Sbjct: 2  AKNLRIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDEL 61

Query: 81 L 81
           
Sbjct: 62 F 62


>gi|261381037|ref|ZP_05985610.1| transcriptional regulator, Cro/CI family [Neisseria subflava
          NJ9703]
 gi|284796072|gb|EFC51419.1| transcriptional regulator, Cro/CI family [Neisseria subflava
          NJ9703]
          Length = 228

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R  R+   L+Q  +    G +Q+ I+ +E G       N++ +A  LD   + L
Sbjct: 7  RLREARRNKGLSQAGLSKLLGVSQASIAAIEAG-RNKRPTNLVSIAKALDVSPYWL 61


>gi|207723399|ref|YP_002253798.1| transcription regulator protein [Ralstonia solanacearum MolK2]
 gi|206588598|emb|CAQ35561.1| probable transcription regulator protein [Ralstonia solanacearum
          MolK2]
          Length = 96

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + N  G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRAERGIAQESLANLAGIERSHVGKVERGEHMPTLAIIFRIAGALECSTAVLM 84

Query: 82 K 82
           
Sbjct: 85 T 85


>gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)]
 gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+   LT  ++   TG + S +S LE+G+    + +++ LA     PL +L+
Sbjct: 14 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 73


>gi|88705426|ref|ZP_01103137.1| DNA-binding protein [Congregibacter litoralis KT71]
 gi|88700516|gb|EAQ97624.1| DNA-binding protein [Congregibacter litoralis KT71]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +  R+   L+Q  +      +Q  +S LETG+S  + D ++ LA  ++ PL +
Sbjct: 13 KQWRQRRNLSQLHLAETADISQRHLSWLETGRSQPSRDMVLKLADAMEVPLRE 65


>gi|319782137|ref|YP_004141613.1| hypothetical protein Mesci_2417 [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|317168025|gb|ADV11563.1| Protein of unknown function DUF2083,transcriptional regulator
          [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 480

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ IF     R IR    LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  DQKIFAGPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILRLASVYKVD 62

Query: 77 LWKL 80
            +L
Sbjct: 63 PHEL 66


>gi|308181643|ref|YP_003925771.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|308047134|gb|ADN99677.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 223

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 36/61 (59%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F++N + IR++ K+TQ +I  +   ++  IS  E G+S  +I  ++ ++   D  + +LL
Sbjct: 3  FLDNLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|295109235|emb|CBL23188.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 91

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 32/59 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + IRK   ++  ++  +TG ++S ++++E G +  ++  +  +   L     +L++P
Sbjct: 11 NLKRIRKSKCMSLDQVAEQTGVSKSMLAQIERGTANPSLGVLGKITSGLRIEFQELIQP 69


>gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. C]
 gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. C]
          Length = 509

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++ +  G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|241766564|ref|ZP_04764422.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241363184|gb|EER58771.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 299

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 12 SDAILRERM------IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
              L  R        F  + R  R++  L+Q ++ +    +   +S +ETG++  + D 
Sbjct: 11 PRPTLPHRTGVAAPSSFGEHLRTWRQQRHLSQLDLAHEADISTRHVSFMETGRTNPSRDM 70

Query: 66 MIILAHTLDTPLWK 79
          ++ L   L  PL +
Sbjct: 71 VLRLCDRLCIPLRE 84


>gi|229058432|ref|ZP_04196816.1| Transcriptional regulator, Xre [Bacillus cereus AH603]
 gi|228719941|gb|EEL71531.1| Transcriptional regulator, Xre [Bacillus cereus AH603]
          Length = 404

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A+ L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIANKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|226948085|ref|YP_002803176.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843648|gb|ACO86314.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R ++KL+Q+++  +    +  IS  E GK+  +I+++++L+      L  L+K
Sbjct: 5  KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63


>gi|226363378|ref|YP_002781160.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226241867|dbj|BAH52215.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 206

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   T  ++   TG + S +S LE G+    ++ M++LA     PL +L+
Sbjct: 17 VGPRLKALRQQRGATLAQLSESTGISVSTLSRLEAGQRKPTLELMLLLARAHQLPLDELV 76


>gi|170760210|ref|YP_001786158.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407199|gb|ACA55610.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R ++KL+Q+++  +    +  IS  E GK+  +I+++++L+      L  L+K
Sbjct: 5  KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63


>gi|170754897|ref|YP_001780428.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169120109|gb|ACA43945.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R ++KL+Q+++  +    +  IS  E GK+  +I+++++L+      L  L+K
Sbjct: 5  KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63


>gi|168187847|ref|ZP_02622482.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
 gi|169294280|gb|EDS76413.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
          Length = 64

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
              +  R E  + QK++    G ++ ++S LE G+ +  +I  M  ++  L+  + +L 
Sbjct: 2  GLKLKIKRIEKGIKQKDLAKEIGISRYYLSALENGRANNPSIPVMKKISEILEVTVQELF 61


>gi|168184026|ref|ZP_02618690.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          Bf]
 gi|237794098|ref|YP_002861650.1| Cro/CI family transcriptional regulator [Clostridium botulinum
          Ba4 str. 657]
 gi|182672867|gb|EDT84828.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          Bf]
 gi|229260454|gb|ACQ51487.1| transcriptional regulator, Cro/CI family [Clostridium botulinum
          Ba4 str. 657]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R ++KL+Q+++  +    +  IS  E GK+  +I+++++L+      L  L+K
Sbjct: 5  KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63


>gi|153938231|ref|YP_001390160.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152934127|gb|ABS39625.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295318252|gb|ADF98629.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R ++KL+Q+++  +    +  IS  E GK+  +I+++++L+      L  L+K
Sbjct: 5  KQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDILVK 63


>gi|326442440|ref|ZP_08217174.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 196

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|326331215|ref|ZP_08197509.1| toxin-antitoxin system, antitoxin component, Xre family
          [Nocardioidaceae bacterium Broad-1]
 gi|325950985|gb|EGD43031.1| toxin-antitoxin system, antitoxin component, Xre family
          [Nocardioidaceae bacterium Broad-1]
          Length = 84

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 R    L+Q+E+    G  QS I+ LE+G     ID ++ +A  LD
Sbjct: 15 AAQVTEHRVARGLSQRELAELCGTTQSAIARLESGSRPPKIDTLLRVAAALD 66


>gi|311108201|ref|YP_003981054.1| hypothetical protein AXYL_05033 [Achromobacter xylosoxidans A8]
 gi|310762890|gb|ADP18339.1| helix-turn-helix family protein 11 [Achromobacter xylosoxidans
          A8]
          Length = 302

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 11 LSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           +      R  F        R +R    +T+K +   TG ++  ++ LE G    +I  +
Sbjct: 6  DAAPSEPRREAFLVALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVL 65

Query: 67 IILAHTLDTPLWKLL 81
          + +A   +  L +L+
Sbjct: 66 LQIARAFNCALAELV 80


>gi|255523832|ref|ZP_05390797.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255512535|gb|EET88810.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + +R E  L+   +   TG ++S + ++E  ++   +  +  +A+ L     +
Sbjct: 6  FIIAENLKKLRVEKTLSLDNVSKLTGVSKSMLGQIERCEANPTVSTVWKIANGLKISCTQ 65

Query: 80 LL 81
          L+
Sbjct: 66 LM 67


>gi|167756260|ref|ZP_02428387.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402]
 gi|167703668|gb|EDS18247.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402]
          Length = 71

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    +TQK++ +  G ++  ++ +E G     +   I +   L+  L +L 
Sbjct: 6  RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELF 62


>gi|50085608|ref|YP_047118.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531584|emb|CAG69296.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+E  L   E+    G +Q  +S++E  + + +++ +  L   L  P+  L 
Sbjct: 15 GIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLF 73


>gi|37524226|ref|NP_927570.1| hypothetical protein plu0206 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36783649|emb|CAE12501.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 100

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   ++ RK   LTQ+++  + G  +  IS +E GKS  N+D +   A  L 
Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLDTLSRYAAALG 89


>gi|90421626|ref|YP_529996.1| anaerobic benzoate catabolism transcriptional regulator
          [Rhodopseudomonas palustris BisB18]
 gi|90103640|gb|ABD85677.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Rhodopseudomonas palustris BisB18]
          Length = 305

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D+   S+    E++   +  R  R    +++K +   +G ++ +I++LE+GK  ++I  +
Sbjct: 2  DQHPESETSFLEQL--GHRVRTTRALRGMSRKVLAKVSGVSERYIAQLESGKGNVSIVLL 59

Query: 67 IILAHTLDTPLWKLL 81
            +A  + +    L+
Sbjct: 60 RRVAQAMGSHPEDLI 74


>gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 201

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R+    T  ++    G ++  +  +E G +  ++  ++ ++  L   L  L+
Sbjct: 13 GSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAANPSVGTLLRISDALGIGLPALV 71


>gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519]
 gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii]
          Length = 234

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F  N + +RK   K+TQ+E+  + G ++  +S+ E       +D +I +       + 
Sbjct: 1  MSFGQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVMYPEMDKVIEICKLFSCSMD 60

Query: 79 KLLK 82
          +L++
Sbjct: 61 ELIR 64


>gi|308187448|ref|YP_003931579.1| hypothetical protein Pvag_1947 [Pantoea vagans C9-1]
 gi|308057958|gb|ADO10130.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
          vagans C9-1]
          Length = 185

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+   L+Q+ +    G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLAQIRQTMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|291543704|emb|CBL16813.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 75

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R    + Q+E+  R G  +  I  +E G     +   + +   LD  L  L 
Sbjct: 4  KRMKIARIAHDMNQEELAKRVGVTRQTIGMIEQGNYNPTLKLCMAICDALDCTLDTLF 61


>gi|241894860|ref|ZP_04782156.1| possible antirepressor [Weissella paramesenteroides ATCC 33313]
 gi|241871868|gb|EER75619.1| possible antirepressor [Weissella paramesenteroides ATCC 33313]
          Length = 333

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            NN    R E   +  E+  R+G   + I   E G++T  ++ +  L+  LD  + +L
Sbjct: 270 GNNVNKYRLERGYSMNELARRSGLYVNNIFNYENGRTTPRLETIFKLSDALDVSIEQL 327


>gi|258653034|ref|YP_003202190.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258556259|gb|ACV79201.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 215

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER I     R+ R+ A +T  ++  R G +++ +S++E  +++ ++  +  LA  LD P+
Sbjct: 31 ERAI-AAQVRSYRQAAGVTLADMAERVGISKAMLSKIENAQTSCSLTTLARLAAGLDIPV 89

Query: 78 WKLLK 82
            L +
Sbjct: 90 TALFR 94


>gi|227878075|ref|ZP_03996063.1| transcriptional regulator [Lactobacillus crispatus JV-V01]
 gi|256843789|ref|ZP_05549276.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256849653|ref|ZP_05555085.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047762|ref|ZP_06020714.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US]
 gi|293381795|ref|ZP_06627770.1| helix-turn-helix protein [Lactobacillus crispatus 214-1]
 gi|312977080|ref|ZP_07788829.1| transcriptional regulator [Lactobacillus crispatus CTV-05]
 gi|227862335|gb|EEJ69866.1| transcriptional regulator [Lactobacillus crispatus JV-V01]
 gi|256613694|gb|EEU18896.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256713769|gb|EEU28758.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571967|gb|EEX28535.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US]
 gi|290921665|gb|EFD98692.1| helix-turn-helix protein [Lactobacillus crispatus 214-1]
 gi|310896408|gb|EFQ45473.1| transcriptional regulator [Lactobacillus crispatus CTV-05]
          Length = 66

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK+ +++Q E+  R G A+  I+ +E  K   +++  + LAH L T L  L 
Sbjct: 2  NRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLF 59


>gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
 gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus
          Ellin428]
          Length = 207

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +       S + L +R+      R +R    L+   + NR+G ++S IS +E G+S+
Sbjct: 1  MKPKPATAAADSASDLNQRI--AGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGESS 58

Query: 61 INIDNMIILAHTLDTPLWKLL 81
               +  LA  L   L  L 
Sbjct: 59 PTAVVLEKLASGLGATLPSLF 79


>gi|160895910|ref|YP_001561492.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361494|gb|ABX33107.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + ++ G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLM 84


>gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec]
 gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec]
          Length = 366

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R  R    L+Q ++   +G  Q+ IS++E+G    + D +  +A    TP
Sbjct: 14 GERIRAARTLLGLSQGDLAEASGVGQTMISKIESGAKYPSDDLLDTIAAVTGTP 67


>gi|330502985|ref|YP_004379854.1| XRE family transcriptional regulator [Pseudomonas mendocina
          NK-01]
 gi|328917271|gb|AEB58102.1| XRE family transcriptional regulator [Pseudomonas mendocina
          NK-01]
          Length = 190

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +RK  K+T  E+  R G +  ++S++E G S   + ++  +A  LD P
Sbjct: 22 LRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAIAEALDVP 69


>gi|313112793|ref|ZP_07798440.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310624863|gb|EFQ08171.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 110

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK   +TQ+E+  R   +   +  +E G+   +ID M+ +   L   L  L+
Sbjct: 9  GKRIQQLRKANGMTQEEMAIRLNISDRHLGRIERGECAASIDLMVEVVVLLKANLDFLI 67


>gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 174

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +R+R     +  I             IR++ KL+Q++     G  +  +S  E G S  N
Sbjct: 31  KRRRKVKDSNQNI-------AKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPN 83

Query: 63  IDNMIILAHTLDTPLWKLLK 82
           I+ +I+++   D P+ ++LK
Sbjct: 84  INTLILISEKFDIPVDEMLK 103


>gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto
          BEST195]
          Length = 113

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 3  LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|228909127|ref|ZP_04072956.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200]
 gi|228850635|gb|EEM95460.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200]
          Length = 66

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N     R E   TQ+++  R G ++  I+ +E  K   ++     +A     PL ++
Sbjct: 1  MLNNRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEV 60

Query: 81 LK 82
           +
Sbjct: 61 FE 62


>gi|257414251|ref|ZP_04745748.2| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257200672|gb|EEU98956.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 128

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H      +         +  R + KLT  E+  ++G +  +I E+E   +  +++ +  L
Sbjct: 11 HDMAKSKKIDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLGQL 70

Query: 70 AHTLDTPLWKLLKP 83
             L         P
Sbjct: 71 IRALHISADPFFYP 84


>gi|225619876|ref|YP_002721133.1| helix-turn-helix XRE-family like containing protein [Brachyspira
          hyodysenteriae WA1]
 gi|225214695|gb|ACN83429.1| HTH XRE, Helix-turn-helix XRE-family like containing protein
          [Brachyspira hyodysenteriae WA1]
          Length = 527

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 25 NFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N ++IR K  KLTQ +     G  Q +IS LE   + I +D +  LA      + +L K
Sbjct: 5  NLKDIREKILKLTQSQFAKMLGVRQDYISRLERNANNITLDLLDKLAENTGLTIDELTK 63


>gi|199597611|ref|ZP_03211039.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus HN001]
 gi|258509756|ref|YP_003172507.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|199591418|gb|EDY99496.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus HN001]
 gi|257149683|emb|CAR88656.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus
          GG]
 gi|259651020|dbj|BAI43182.1| transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 189

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N+ + +R   +LTQ ++ ++   ++  +S  ETG+   ++  +  LA      + +L
Sbjct: 5  VLGNHLKALRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDEL 64

Query: 81 LKP 83
          L+P
Sbjct: 65 LRP 67


>gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42]
 gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42]
          Length = 113

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 3  LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis
          HAW-EB3]
 gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis
          HAW-EB3]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   L   L    
Sbjct: 6  GTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 64


>gi|153836404|ref|ZP_01989071.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          AQ3810]
 gi|260901662|ref|ZP_05910057.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          AQ4037]
 gi|149750306|gb|EDM61051.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          AQ3810]
 gi|308108916|gb|EFO46456.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          AQ4037]
 gi|328470597|gb|EGF41508.1| transcriptional regulator [Vibrio parahaemolyticus 10329]
          Length = 207

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P     +      I   ++      ++IR +  +T +E   RTG A+S +S++E  + + 
Sbjct: 10 PSMTLAKEQNDQNIEPLKL--GQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISP 67

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
              M  LA  L   + +L +P
Sbjct: 68 TFQAMQKLALGLQIDMPQLFEP 89


>gi|91225430|ref|ZP_01260552.1| transcriptional regulator, HTH_3 family protein [Vibrio
          alginolyticus 12G01]
 gi|91189793|gb|EAS76066.1| transcriptional regulator, HTH_3 family protein [Vibrio
          alginolyticus 12G01]
          Length = 207

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314]
 gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 169

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTL 73
                  R IRK    +Q+E+      +++ IS LE  ++         +  +  L+  L
Sbjct: 52  HTLGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWAL 111

Query: 74  DTPLWKLL 81
           D P   LL
Sbjct: 112 DVPPAALL 119


>gi|83855136|ref|ZP_00948666.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1]
 gi|83842979|gb|EAP82146.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1]
          Length = 188

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           DAIL +        +  R    L+   +   +G ++S +S++E G+S+  I  +  L  
Sbjct: 5  PDAILTQ---LPARLKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTR 61

Query: 72 TLDTPLWKLL 81
           L      LL
Sbjct: 62 ALQVDFAGLL 71


>gi|325840355|ref|ZP_08167002.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1]
 gi|325490340|gb|EGC92667.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1]
          Length = 143

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +RK  + TQ+ +  +   ++  I++ E+G++T ++++++  +   +  L  L
Sbjct: 1  MISMNLRRLRKIHQYTQENVAEKLNVSRQSIAKWESGETTPDLEHLLKFSKLYNVSLDNL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|317131818|ref|YP_004091132.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315469797|gb|ADU26401.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 186

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     ++ R +   + +EI +    + S IS +E GK++ N+  +  +   L+ P++ L
Sbjct: 5  LIGQTIKDRRIKMGKSIREIASACEISPSTISMIENGKTSPNLLTLKAVCDALNIPVFSL 64

Query: 81 L 81
          L
Sbjct: 65 L 65


>gi|257484219|ref|ZP_05638260.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331008290|gb|EGH88347.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 150

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F    R IR    LTQK++      A S +S+LE+GK+T  +  +  LA +LD    
Sbjct: 4  REGFAAALRLIRVTKGLTQKDLAGP--VAASHVSQLESGKTTPTVKVVGELAQSLDLSPS 61

Query: 79 KLL 81
           LL
Sbjct: 62 ALL 64


>gi|224542833|ref|ZP_03683372.1| hypothetical protein CATMIT_02025 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524245|gb|EEF93350.1| hypothetical protein CATMIT_02025 [Catenibacterium mitsuokai DSM
          15897]
          Length = 177

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R    LT +E+ NR+  ++ ++S++E   ++ ++  +  +   L T L    
Sbjct: 3  LGRKIKQLRLANDLTLEELANRSELSKGFLSQVERNLTSPSVATLDDILEALGTNLHDFF 62


>gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 71

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK+  +TQ+E+  +   ++  I  LE G+   +I     ++   +  + ++ 
Sbjct: 3  NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIF 60


>gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium
          kroppenstedtii DSM 44385]
 gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium
          kroppenstedtii DSM 44385]
          Length = 498

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                R+      + +RKE +L+Q  + +  G + S+++++E     +    +  + H 
Sbjct: 7  KEGPSSRVFVGTRLKQLRKERELSQATLAHALGLSASYVNQIENDSRPLTSSVLRKITHV 66

Query: 73 LDT 75
             
Sbjct: 67 FGI 69


>gi|228907976|ref|ZP_04071826.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
 gi|228851642|gb|EEM96446.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|229159135|ref|ZP_04287181.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342]
 gi|228624336|gb|EEK81117.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342]
          Length = 274

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 35/60 (58%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +++R   K+TQ+++ ++   ++  IS+ E GKS  ++ N++ L++  +  +  LLK
Sbjct: 57  GKKIKHLRLINKMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDSLLK 116


>gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM
          12042]
 gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM
          12042]
          Length = 260

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  L+Q+ + ++ G  +  +S+ E  +     + ++ L+         LL
Sbjct: 3  FGEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQGYPETEKILQLSQLFGVSTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus
          NA1000]
 gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus
          NA1000]
          Length = 480

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L      +++      + +R++  +TQ  +    G + S+++ LE  +  +    ++ LA
Sbjct: 4  LEKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQRPVTAQILLRLA 63

Query: 71 HTLDTPLWKL 80
             D  L  L
Sbjct: 64 DAYDLDLRSL 73


>gi|239814445|ref|YP_002943355.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801022|gb|ACS18089.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 284

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +      R  F  + R+ R   +L+Q ++      +   +S +ETG++  + + ++ 
Sbjct: 10 HSTAAGQPGARDPFGAHLRHWRTRRRLSQLDLAQEAEVSTRHLSYVETGRAAPSREMVLR 69

Query: 69 LAHTLDTPLWK 79
          LA  LD PL +
Sbjct: 70 LAERLDVPLRE 80


>gi|207857403|ref|YP_002244054.1| phage encoded transcriptional regulator [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
 gi|206709206|emb|CAR33539.1| phage encoded transcriptional regulator [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
          Length = 231

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   E+    G   + IS LETGK     +  +  LA  L   + +L 
Sbjct: 4  GNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLSVDIAELF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|149924529|ref|ZP_01912888.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149814622|gb|EDM74203.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 135

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + RN+R    LTQ+ +  R   +   I  LE G  +  ++ ++ LA      L  LL
Sbjct: 23 FGKHLRNLRNARGLTQEVLAERANLSSDTIRRLEHGTFSPTLNTLLRLASGYGLRLSTLL 82


>gi|217974624|ref|YP_002359375.1| helix-turn-helix domain-containing protein [Shewanella baltica
          OS223]
 gi|217499759|gb|ACK47952.1| helix-turn-helix domain protein [Shewanella baltica OS223]
 gi|319428169|gb|ADV56243.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 367

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F       RK A L+   + N  G + + I + E G +  +  N++ LA  LD      
Sbjct: 1  MFAERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|119964507|ref|YP_946525.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119951366|gb|ABM10277.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 495

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 4  RKRDEPHLSDAILR-ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          R+   P L  A    + +      R++RK+A LT  ++    G A S +S +E  K    
Sbjct: 8  REVASPSLPAASPELDVISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENAKREPK 67

Query: 63 IDNMIILAHTLDTPLWKLL 81
          +  +  LA +L+  + +LL
Sbjct: 68 LGLLQQLAASLNVTIDQLL 86


>gi|42780878|ref|NP_978125.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42736799|gb|AAS40733.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168]
 gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY]
 gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5]
 gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR
 gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX
 gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis]
 gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis]
 gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response
          [Bacillus subtilis subsp. spizizenii str. W23]
 gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5]
          Length = 111

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 1  MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 485

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + +R+E  LTQ+ +    G + S+++ +E  +  +  D ++ LA +    + +L
Sbjct: 29 LGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQRPLTADLLLRLARSYKLDMSEL 87


>gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
 gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986]
          Length = 75

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+++ +  G ++  I+ +E G     I   + + + LD  L +L 
Sbjct: 7  RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELF 63


>gi|307727212|ref|YP_003910425.1| Cupin 2 conserved barrel domain-containing protein [Burkholderia
          sp. CCGE1003]
 gi|307587737|gb|ADN61134.1| Cupin 2 conserved barrel domain protein [Burkholderia sp.
          CCGE1003]
          Length = 190

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 14 VGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67


>gi|269127509|ref|YP_003300879.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268312467|gb|ACY98841.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 127

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R +R     T +E+      +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 5  RQLLGDVLRQLRLRQGRTLREVSAAARVSLGYLSEVERGQKEASSELLASICKALGVPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 HVLR 68


>gi|240112583|ref|ZP_04727073.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
 gi|240121380|ref|ZP_04734342.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
 gi|240123181|ref|ZP_04736137.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
 gi|254493390|ref|ZP_05106561.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268598654|ref|ZP_06132821.1| predicted protein [Neisseria gonorrhoeae MS11]
 gi|268601681|ref|ZP_06135848.1| predicted protein [Neisseria gonorrhoeae PID18]
 gi|268603326|ref|ZP_06137493.1| predicted protein [Neisseria gonorrhoeae PID1]
 gi|268681806|ref|ZP_06148668.1| predicted protein [Neisseria gonorrhoeae PID332]
 gi|268684027|ref|ZP_06150889.1| predicted protein [Neisseria gonorrhoeae SK-92-679]
 gi|291044182|ref|ZP_06569894.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293398775|ref|ZP_06642943.1| phage associated protein [Neisseria gonorrhoeae F62]
 gi|226512430|gb|EEH61775.1| predicted protein [Neisseria gonorrhoeae 1291]
 gi|268582785|gb|EEZ47461.1| predicted protein [Neisseria gonorrhoeae MS11]
 gi|268585812|gb|EEZ50488.1| predicted protein [Neisseria gonorrhoeae PID18]
 gi|268587457|gb|EEZ52133.1| predicted protein [Neisseria gonorrhoeae PID1]
 gi|268622090|gb|EEZ54490.1| predicted protein [Neisseria gonorrhoeae PID332]
 gi|268624311|gb|EEZ56711.1| predicted protein [Neisseria gonorrhoeae SK-92-679]
 gi|291011899|gb|EFE03892.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610777|gb|EFF39884.1| phage associated protein [Neisseria gonorrhoeae F62]
          Length = 153

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 2   PRRK----RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
           PRRK    R    ++D I          F ++R +   TQ E+    G  Q ++S +E  
Sbjct: 59  PRRKAAMDRAAARIADKIAL--KAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENS 116

Query: 58  KSTINIDNMIILAHTLDTPLWKL 80
           K ++    +  LA+ L     ++
Sbjct: 117 KQSLQDKTVQKLANALGVSPLEV 139


>gi|188591670|ref|YP_001796269.1| hypothetical protein pRALTA_0436 [Cupriavidus taiwanensis]
 gi|170939065|emb|CAP64081.1| Conserved hypothetical protein [Cupriavidus taiwanensis LMG
          19424]
          Length = 195

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P      +  R       R  R+    +  E+  R G +++ IS++E G+++     + 
Sbjct: 11 SPVDPTGAISAR------VRIERESRGWSMGELAERAGVSKAMISKIERGEASPTATVLG 64

Query: 68 ILAHTLDTPLWKLL 81
           L+      L  LL
Sbjct: 65 RLSGAFGLQLSMLL 78


>gi|91779152|ref|YP_554360.1| transcriptional regulator [Burkholderia xenovorans LB400]
 gi|91691812|gb|ABE35010.1| Transcriptional regulator, XRE family with Cupin sensor domain
          [Burkholderia xenovorans LB400]
          Length = 189

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK+  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 11 VATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|29834073|ref|NP_828707.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
 gi|29611198|dbj|BAC75242.1| putative transcriptional regulator [Streptomyces avermitilis
          MA-4680]
          Length = 417

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAH 71
            +  +  +F    + +RKE + TQ E     G   SW+S++E G   +  +D +  +A 
Sbjct: 6  KDVDPQDRVFGQRVQKLRKEQRRTQAEFAAALGKTSSWMSQVERGIQPVQRMDLLQQIAD 65

Query: 72 TLDTPLWKL 80
           L   + +L
Sbjct: 66 ELGVSVQQL 74


>gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 158

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++F    + +RKEA LTQK+I  + G  Q    + E+GK     + +   A   +  +  
Sbjct: 38 LMFPERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDY 97

Query: 80 LL 81
          LL
Sbjct: 98 LL 99


>gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22]
 gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22]
          Length = 198

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRKE + T   +   TG + S +S LE+G    +++ ++ +A     PL +L+
Sbjct: 18 VGPRLRRIRKEREATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELI 77


>gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces roseosporus NRRL 15998]
 gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces roseosporus NRRL 11379]
 gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus
          NRRL 15998]
 gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus
          NRRL 15998]
          Length = 509

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|46915658|emb|CAG22430.1| hypothetical transcriptional regulator [Photobacterium profundum
          SS9]
          Length = 114

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + IR+   + Q E+  +   ++S++SE+E+GK  +N++ +   ++  D P+  L+
Sbjct: 19 LKIIRQFHNVKQVELAQKLNLSKSYLSEIESGKKPVNLELLDKYSNLFDIPVSSLV 74


>gi|78064026|ref|YP_373934.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77971911|gb|ABB13290.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia sp. 383]
          Length = 203

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|163943401|ref|YP_001642631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|228925002|ref|ZP_04088132.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|163865598|gb|ABY46656.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228834665|gb|EEM80174.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 66

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N     R E   TQ+++  R G ++  I+ +E  K   ++     +A     PL ++
Sbjct: 1  MLNNRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEV 60

Query: 81 LK 82
           +
Sbjct: 61 FE 62


>gi|326333336|ref|ZP_08199583.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
          Broad-1]
 gi|325948980|gb|EGD41073.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
          Broad-1]
          Length = 224

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  +  R    LTQ+ +  R+G +Q  +S  E G  +  +  +  +   LD  L
Sbjct: 7  GSLLKAARVARGLTQETLARRSGTSQPSLSAYERGTKSPTLAVLERILRCLDFEL 61


>gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces
          oris K20]
          Length = 146

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N   +RK+ + TQ+ + N+ G ++  I++ E      +I + I LA   D  +  L
Sbjct: 1  MISSNIAALRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCIRLAQAFDVAIDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|300173268|ref|YP_003772434.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum
          LMG 18811]
 gi|299887647|emb|CBL91615.1| Transcriptional regulator, XRE family,putative [Leuconostoc
          gasicomitatum LMG 18811]
          Length = 71

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN   +RKE K++Q++     G  +  IS LE G+   +I   + +A      +  + 
Sbjct: 3  NNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYNPSILLAMKIARYFGKSVENIF 60


>gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia
          solanacearum PSI07]
 gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein)
          [Ralstonia solanacearum PSI07]
          Length = 209

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           EP  +D             R +R     T   +  R G ++S IS +E G ++     +
Sbjct: 5  AEPSTADTDAGVNERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAASPTAAVL 64

Query: 67 IILAHTLDTPLWKLL 81
            LA  L   L  L 
Sbjct: 65 DKLAAGLGVSLASLF 79


>gi|228995259|ref|ZP_04154973.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM
          12442]
 gi|228764497|gb|EEM13332.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM
          12442]
          Length = 142

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R+    +Q+++  + G  +  + + E+ KS  +IDN+I+L+   +  + +L+
Sbjct: 3  LGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|227551898|ref|ZP_03981947.1| DNA-binding protein [Enterococcus faecium TX1330]
 gi|257895511|ref|ZP_05675164.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227178970|gb|EEI59942.1| DNA-binding protein [Enterococcus faecium TX1330]
 gi|257832076|gb|EEV58497.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 370

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +    N  N+RK+  +TQ+ +    G  ++ +S+ ETG+S  ++  +  LA   D  +
Sbjct: 2  EELSLSKNVANLRKKKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|210610650|ref|ZP_03288550.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787]
 gi|210152372|gb|EEA83378.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787]
          Length = 124

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R +A  TQ++     G + ++  ++E G+  +++  ++ +   L+  +  LL 
Sbjct: 25 GKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLVHVYEKLNIDINYLLT 84


>gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC
          35704]
 gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC
          35704]
          Length = 234

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  RK+A +TQ+E+  R   ++  IS+ E+G +   ++ ++ L       +  L+
Sbjct: 4  FSENLQFYRKKADMTQEELAERMEVSRQTISKWESGATYPEMEKILQLCEMFRCDMDTLI 63

Query: 82 K 82
          +
Sbjct: 64 R 64


>gi|159038191|ref|YP_001537444.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157917026|gb|ABV98453.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 219

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   LT  ++   TG ++S +S LE G+    ++ ++ LA   + PL  L+
Sbjct: 12 VGPRLRALRRHRGLTLADVSTTTGVSESTLSRLEGGQRRATLELLLPLARIYNVPLDDLV 71


>gi|20809100|ref|NP_624271.1| helix-turn-helix [Thermoanaerobacter tengcongensis MB4]
 gi|20517778|gb|AAM25875.1| Helix-turn-helix [Thermoanaerobacter tengcongensis MB4]
          Length = 321

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +NIRK   L+Q ++  +   ++  + ++E GK     + + +L+H     L +
Sbjct: 9  EAFGEELKNIRKSLGLSQSDVAEQAFISRDTLRKIENGKVIPKQETLDLLSHLYKKDLNE 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|94310423|ref|YP_583633.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|163856492|ref|YP_001630790.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|93354275|gb|ABF08364.1| putative DNA-binding transcriptional regulator [Cupriavidus
          metallidurans CH34]
 gi|163260220|emb|CAP42522.1| predicted transcriptional regulator [Bordetella petrii]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + ++ G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLM 84


>gi|332716566|ref|YP_004444032.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325063251|gb|ADY66941.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 225

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 5  KRDEPHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
                   A+   R     M   +  R  RK+  +T  ++ + TG +   +S++E G  
Sbjct: 15 PALLSQDPHAVREPRVNNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNI 74

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
          + ++  +  L+  L  P+    +
Sbjct: 75 SPSLTTLQTLSKALGVPITAFFR 97


>gi|296393353|ref|YP_003658237.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296180500|gb|ADG97406.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 101

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     + R +R     T +E+ NR   +  ++SE+E G+   + + +  +   LD P+ 
Sbjct: 6  REALGASLRQLRLGQHRTLREVSNRASMSLGYLSEIERGQKEASSELLAAICGALDVPVP 65

Query: 79 KLLK 82
           +L+
Sbjct: 66 DVLR 69


>gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family
          [Thermocrinis albus DSM 14484]
 gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family
          [Thermocrinis albus DSM 14484]
          Length = 329

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+ A L+Q+E+       ++ +S +E      ++ + I +A  L   + +L 
Sbjct: 3  NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVVPSVSHAIRIARALGCSVEELF 60


>gi|282865544|ref|ZP_06274595.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559588|gb|EFB65139.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 285

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  
Sbjct: 2  PTNVNPTVRRRRL-GQELRRLREIKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRD 60

Query: 69 LAHTLDTP 76
          L    +  
Sbjct: 61 LCGVYEVE 68


>gi|289579492|ref|YP_003478119.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289529205|gb|ADD03557.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 320

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +NIRK   L+Q ++  ++  ++  + ++E GK     + +  L+H     L +
Sbjct: 9  EAFGEELKNIRKSLGLSQSDVAEQSFISRDTLRKIENGKVIPKQETLDFLSHLYKKDLNE 68

Query: 80 LL 81
          LL
Sbjct: 69 LL 70


>gi|253682587|ref|ZP_04863384.1| helix-turn-helix domain protein [Clostridium botulinum D str.
          1873]
 gi|253562299|gb|EES91751.1| helix-turn-helix domain protein [Clostridium botulinum D str.
          1873]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I   N + IR +  ++   +   TG +++ + ++E G+S   +  +  +A  L   
Sbjct: 7  IIGINLKTIRTQKNMSLDTVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVS 62


>gi|150376382|ref|YP_001312978.1| hypothetical protein Smed_4240 [Sinorhizobium medicae WSM419]
 gi|150030929|gb|ABR63045.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419]
          Length = 472

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      R++R   +LTQ +   R G + S+++++E  +  ++   ++ LA      + 
Sbjct: 5  KLYIGRKVRDLRDGKRLTQAQFAERIGISTSYLNQIENNQRPVSASVLLALAEKFQIDIA 64

Query: 79 KL 80
          +L
Sbjct: 65 EL 66


>gi|110677608|ref|YP_680615.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
 gi|109453724|gb|ABG29929.1| DNA-binding protein [Roseobacter denitrificans OCh 114]
          Length = 187

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R+   L+   +   +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 15 RLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 71


>gi|329117134|ref|ZP_08245851.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907539|gb|EGE54453.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 120

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ +F  N + +R + K+ Q E+    G  + S ISE E GK T   D +  +A+     
Sbjct: 4  QKSLFARNLKYLRLKNKMEQLELAEYLGRKSSSSISEWEKGKYTPKTDILGKIANLFKVS 63

Query: 77 LWKLLK 82
          L +L++
Sbjct: 64 LTELME 69


>gi|296329582|ref|ZP_06872068.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305672779|ref|YP_003864450.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296153325|gb|EFG94188.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305411022|gb|ADM36140.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
          Length = 72

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I+    R  RK    TQ+      G + S + E+E G    +   +   A  L+   
Sbjct: 2  EAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQGAADVLNISA 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 DELAPP 67


>gi|228918176|ref|ZP_04081680.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228841456|gb|EEM86595.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|227113678|ref|ZP_03827334.1| putative regulatory protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R E  +TQ+ + N  G  QS+++++E G+  +++   + +AH L      +L+
Sbjct: 29 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDASTVLE 85


>gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758]
 gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758]
          Length = 194

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R  RK+  +T + +   TG +  ++S LE  K++ N+D++  +   LD 
Sbjct: 8  GERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKTSPNVDSLARICEALDI 60


>gi|194292664|ref|YP_002008571.1| phage related repressor gp68 [Cupriavidus taiwanensis LMG 19424]
 gi|193226568|emb|CAQ72519.1| putative Gp68, phage related putative repressor, similar to
           bacteriophage phi Gp68 [Cupriavidus taiwanensis LMG
           19424]
          Length = 132

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R+   L   ++  R G  +++IS +ETG+     D +  LA  L+ P+  L +
Sbjct: 71  LRAWRRFRGLPSDQLAKRVGVTRAYISMIETGRRRPAADLLHRLARELEIPVCALAR 127


>gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99]
 gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99]
          Length = 184

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + IRK+  L+Q+E+  R G   S IS +E    + +++++  +   L   L    
Sbjct: 6  GASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSVSPSVNSLKKVLSGLSLSLVDFF 64


>gi|332877403|ref|ZP_08445150.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332684509|gb|EGJ57359.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 100

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + RK+ K+TQ E+  + G  +++IS +E G     +     +   L     +++
Sbjct: 38 VGQMISDARKQEKMTQSELAEKVGTNKTYISRIEKGVIEPGVGLFFRIIDALGLK-VEIV 96

Query: 82 KP 83
          KP
Sbjct: 97 KP 98


>gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
 gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
          Length = 69

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK+  L+Q ++  + G A+  I+ +E  K   +++  I LA  L+T L  L 
Sbjct: 2  NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLF 59


>gi|209515043|ref|ZP_03263912.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209504669|gb|EEA04656.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 183

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK+  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|168698267|ref|ZP_02730544.1| hypothetical protein GobsU_02017 [Gemmata obscuriglobus UQM 2246]
          Length = 75

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  R +A++TQ+ +  +    + ++S LE  + T  I+  I L   +     ++
Sbjct: 1  MFGKLLKEARLKAEMTQELLAVKAELTREYVSLLERDQRTPTIEVFIRLVRAVGLSPAEV 60

Query: 81 L 81
          +
Sbjct: 61 I 61


>gi|163733254|ref|ZP_02140698.1| DNA-binding protein [Roseobacter litoralis Och 149]
 gi|161393789|gb|EDQ18114.1| DNA-binding protein [Roseobacter litoralis Och 149]
          Length = 187

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R+   L+   +   +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 15 RLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLTRALQVDFAGLL 71


>gi|159186071|ref|NP_356428.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|159141205|gb|AAK89213.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 208

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 9  PHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
               A+   R     M   +  R  RK+  +T  ++ + TG +   +S++E G  + ++
Sbjct: 2  SQDPHAVREPRVNNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSL 61

Query: 64 DNMIILAHTLDTPLWKLLK 82
            +  L+  L  P+    +
Sbjct: 62 TTLQTLSKALGVPITAFFR 80


>gi|125624166|ref|YP_001032649.1| hypothetical protein llmg_1347 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|125624178|ref|YP_001032661.1| hypothetical protein llmg_1359 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124492974|emb|CAL97937.1| hypothetical protein llmg_1347 [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124492986|emb|CAL97949.1| conserved hypothetical protein [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|300070943|gb|ADJ60343.1| hypothetical protein LLNZ_06965 [Lactococcus lactis subsp.
          cremoris NZ9000]
 gi|300070955|gb|ADJ60355.1| hypothetical protein LLNZ_07025 [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 94

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRN----------IRKEAKLTQKEIRNRTGFAQSW 50
          MP  K D+ + +     ER   V  F            +R+    TQKE+    G +QS 
Sbjct: 1  MPSIKFDDFYHNYTKSPERKAAVEQFEEQLKASVLLSELREREDYTQKELAELAGTSQST 60

Query: 51 ISELETGKSTINIDNMIILAHTLDTPL 77
          ++ +E+G   +  D +  + + +   L
Sbjct: 61 VARIESGTMNVTFDTLAHIVNAMGYKL 87


>gi|52079411|ref|YP_078202.1| hypothetical protein BL02899 [Bacillus licheniformis ATCC 14580]
 gi|52784771|ref|YP_090600.1| hypothetical protein BLi00999 [Bacillus licheniformis ATCC 14580]
 gi|319646808|ref|ZP_08001037.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2]
 gi|52002622|gb|AAU22564.1| conserved hypothetical protein [Bacillus licheniformis ATCC
          14580]
 gi|52347273|gb|AAU39907.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391396|gb|EFV72194.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2]
          Length = 65

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E  LTQ ++  R    +  I  +E  K    +   I +A  LD  L  L 
Sbjct: 3  NRVKLARIEKSLTQAQLAERVNVTRQTIGLIEKNKYNPTLQLCIAIAKALDKTLDDLF 60


>gi|319440906|ref|ZP_07990062.1| putative Xre family DNA-binding protein [Corynebacterium
          variabile DSM 44702]
          Length = 174

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  R  R +A L+  E   R G  +S +S LE+G    +++ +  LA   + PL
Sbjct: 2  GSALRAERDKAGLSLTEAAARAGIGKSTLSVLESGAGNPSVETLWSLASVYNVPL 56


>gi|303241220|ref|ZP_07327727.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302591231|gb|EFL60972.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 71

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R E K+TQK++ ++   +   IS+ E G    +I  ++ L+  L   + +LL
Sbjct: 6  VGNIIRKTRLEQKMTQKQLADKLDISDKAISKWERGSGNPDISLILKLSDILGIDVRELL 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|291448847|ref|ZP_06588237.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|291351794|gb|EFE78698.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
          Length = 187

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R+   LT   +  R+G +  ++S++E  ++  ++ ++  +A  L T   +LL
Sbjct: 13 LGNAVRRRRRALDLTLASVAERSGLSVPFLSQIENDRARPSMRSLQRIADALRTTAVELL 72


>gi|222825161|dbj|BAH22318.1| transcriptional regulator [Wolbachia endosymbiont of Cadra
          cautella]
          Length = 133

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 R  R     +Q+++  + G +   I   ETG+  + +D +  LA  L   +
Sbjct: 9  KQIGERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEALSVDM 66


>gi|218133915|ref|ZP_03462719.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991290|gb|EEC57296.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC
          43243]
          Length = 128

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 27/74 (36%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H      +         +  R + KLT  E+  ++G +  +I E+E   +  +++ +  L
Sbjct: 11 HDMAKSKKIDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLGQL 70

Query: 70 AHTLDTPLWKLLKP 83
             L         P
Sbjct: 71 IRALHISADPFFYP 84


>gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 327

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI       +RK+   +Q+E+  +   ++  +S+ E+  S  +++ +I LA   +     
Sbjct: 1  MILAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSIPDLNKIIKLADIFEVSTDF 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|58040894|ref|YP_192858.1| putative transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58003308|gb|AAW62202.1| Putative transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 149

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 5  KRDEPHLSDAILRERMIFV------------NNFRNIRKEAKLTQKEIRNRTGFAQSWIS 52
                      R+  +F             +  +  R   K+ Q +    TG  + ++S
Sbjct: 10 PETWHVKQKVSARDPEVFGACDNQAMNETYQSRLKKARIHQKIQQADAAAVTGKGRPYLS 69

Query: 53 ELETGKSTINIDNMIILAHTLDTPL 77
          E E GK   +++ ++ LA   D  L
Sbjct: 70 EFENGKKPGSLEVVLPLAELYDISL 94


>gi|115523415|ref|YP_780326.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115517362|gb|ABJ05346.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 480

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++     FR +R++  L+Q ++    G + S+I+ +E  +  +    ++ LA   D  L
Sbjct: 7  KKLFVGPRFRRLRQQMGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAENYDLDL 66

Query: 78 WKL 80
            L
Sbjct: 67 RDL 69


>gi|302535016|ref|ZP_07287358.1| DNA-binding protein [Streptomyces sp. C]
 gi|302443911|gb|EFL15727.1| DNA-binding protein [Streptomyces sp. C]
          Length = 294

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R++  +T +++  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GMELRKLREDKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCEV 64

Query: 73 LDTPLWKLL 81
           +    +L+
Sbjct: 65 YEVEDPRLV 73


>gi|260774236|ref|ZP_05883151.1| predicted transcriptional regulator [Vibrio metschnikovii CIP
          69.14]
 gi|260611197|gb|EEX36401.1| predicted transcriptional regulator [Vibrio metschnikovii CIP
          69.14]
          Length = 510

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 8/78 (10%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63
          +S +++R+        RN+RK   LT +++  R          + S++S +E GK   ++
Sbjct: 3  ISKSLVRQSHFLGTKVRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSV 62

Query: 64 DNMIILAHTLDT-PLWKL 80
          + + ++A      P W L
Sbjct: 63 EMLEVIAEVFQKDPRWFL 80


>gi|257792684|ref|YP_003183290.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476581|gb|ACV56901.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 70

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER I      R  R+   ++ +      G   +++ ++E G+  I I+N+  +A  L   
Sbjct: 3  ERKIKLGQRIRKEREAQGISLRRFALMIGVGHTYLVDVENGRRNIGIENLCRIADGLGIR 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VSEL 66


>gi|238917513|ref|YP_002931030.1| hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC
          27750]
 gi|238872873|gb|ACR72583.1| Hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC
          27750]
          Length = 107

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + +R    LTQ+++         +IS +E G++ + +  +   A      L  L
Sbjct: 5  LGAKVKKLRIAHGLTQEDVAKALEVTPGYISNVENGRNLMTLRMLSYYAELTGVSLDYL 63


>gi|228933066|ref|ZP_04095929.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228826667|gb|EEM72438.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|228945385|ref|ZP_04107740.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228814357|gb|EEM60623.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229090748|ref|ZP_04221981.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42]
 gi|228692690|gb|EEL46416.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229121334|ref|ZP_04250565.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201]
 gi|228662179|gb|EEL17788.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|225863642|ref|YP_002749020.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|225789107|gb|ACO29324.1| DNA-binding protein [Bacillus cereus 03BB102]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|254391929|ref|ZP_05007122.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294811944|ref|ZP_06770587.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197705609|gb|EDY51421.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294324543|gb|EFG06186.1| Putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 287

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          D     R  F    R +R E   TQ+E+  R G + + IS +ETG+    
Sbjct: 19 DPEKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPT 68


>gi|196038875|ref|ZP_03106182.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|228926817|ref|ZP_04089885.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|301053321|ref|YP_003791532.1| transcriptional regulator [Bacillus anthracis CI]
 gi|196030020|gb|EDX68620.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|228832930|gb|EEM78499.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|300375490|gb|ADK04394.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
          CI]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|196033371|ref|ZP_03100783.1| DNA-binding protein [Bacillus cereus W]
 gi|195993805|gb|EDX57761.1| DNA-binding protein [Bacillus cereus W]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|218902898|ref|YP_002450732.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228914360|ref|ZP_04077975.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|218536358|gb|ACK88756.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228845354|gb|EEM90390.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|149183828|ref|ZP_01862225.1| DNA-binding protein [Bacillus sp. SG-1]
 gi|148848458|gb|EDL62711.1| DNA-binding protein [Bacillus sp. SG-1]
          Length = 123

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + +R+E  ++Q+E+  R    ++ I + E+G    +   ++ L+  LD P  ++L
Sbjct: 4  FGQNLKLLREERNISQEELAMRARLGRTTIEKYESGSQIPDTPTILKLSTVLDVPASEML 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|49477327|ref|YP_035899.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|118477214|ref|YP_894365.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|229183977|ref|ZP_04311192.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1]
 gi|49328883|gb|AAT59529.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|118416439|gb|ABK84858.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|228599502|gb|EEK57107.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|52143677|ref|YP_083152.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51977146|gb|AAU18696.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|41410065|ref|NP_962901.1| hypothetical protein MAP3967 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|118463985|ref|YP_883804.1| XRE family transcriptional regulator [Mycobacterium avium 104]
 gi|254777113|ref|ZP_05218629.1| transcriptional regulator, XRE family protein [Mycobacterium
          avium subsp. avium ATCC 25291]
 gi|41398898|gb|AAS06517.1| hypothetical protein MAP_3967 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|48928160|gb|AAT47758.1| possible transcriptional regulator [Mycobacterium avium]
 gi|118165272|gb|ABK66169.1| transcriptional regulator, XRE family protein [Mycobacterium
          avium 104]
          Length = 138

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 30/58 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R+ R+ A+++ +++  ++G +  ++S++E G    + D +  +A  L      L
Sbjct: 23 GSFIRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSADVLNQIAKALRVSAEVL 80


>gi|30261788|ref|NP_844165.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47527021|ref|YP_018370.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184620|ref|YP_027872.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|65319065|ref|ZP_00392024.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165869450|ref|ZP_02214109.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167633384|ref|ZP_02391709.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167638745|ref|ZP_02397020.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170686089|ref|ZP_02877311.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170706409|ref|ZP_02896869.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177650447|ref|ZP_02933414.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190566266|ref|ZP_03019184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227815444|ref|YP_002815453.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229604650|ref|YP_002866175.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254683285|ref|ZP_05147146.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254723868|ref|ZP_05185654.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254734638|ref|ZP_05192350.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254741048|ref|ZP_05198736.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755290|ref|ZP_05207324.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759827|ref|ZP_05211851.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30256016|gb|AAP25651.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47502169|gb|AAT30845.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178547|gb|AAT53923.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164714890|gb|EDR20408.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167513209|gb|EDR88580.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167531422|gb|EDR94100.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170128507|gb|EDS97374.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170669786|gb|EDT20527.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172083591|gb|EDT68651.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190562401|gb|EDV16368.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227006595|gb|ACP16338.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229269058|gb|ACQ50695.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 403

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|328883064|emb|CCA56303.1| hypothetical protein SVEN_3017 [Streptomyces venezuelae ATCC 10712]
          Length = 126

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R +R  A L+Q ++ +R    +  +   E G+      +++++A  L   + +L++
Sbjct: 67  GHRIRELRTAAGLSQDQLADRIHMERRSVQRYERGERDPRFTDLVLIADALGVTVAELVR 126


>gi|284032035|ref|YP_003381966.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283811328|gb|ADB33167.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 419

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R +  L+QK +        S+IS LE G+    +D ++ LA  L+T   +LL
Sbjct: 8  LGSRLRTLRMQKGLSQKALAGDV-VTPSYISLLEAGERMPTLDVILHLARALETTPAELL 66


>gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 367

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 29/67 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R       R +R+E  +T   +  + G + S +S LE  ++  +   +  +A  L  
Sbjct: 3  PVQRQRIGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQTLPSFTVLAKIAEVLGV 62

Query: 76 PLWKLLK 82
           + + ++
Sbjct: 63 GIDEFVR 69


>gi|260555242|ref|ZP_05827463.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411784|gb|EEX05081.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 197

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R     T   +  R   ++S IS +E G+++     +  LA+ L+ PL ++  
Sbjct: 9  AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68


>gi|255525979|ref|ZP_05392904.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255510319|gb|EET86634.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 182

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R E +LT +E  N TG +++ + ++E G+S   I  +  ++  L     +LL
Sbjct: 9  GSVLKRVRFERELTLEETSNLTGVSKAMLGQIERGESNPTISILWKISTGLRISFSELL 67


>gi|222112690|ref|YP_002554954.1| XRE family transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221732134|gb|ACM34954.1| transcriptional regulator, XRE family [Acidovorax ebreus TPSY]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + N  G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRTERGIAQESLANLAGIERSHMGKVERGEHMPTLAIIFKIASALECSTAVLM 84


>gi|229918744|ref|YP_002887390.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229470173|gb|ACQ71945.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b]
          Length = 74

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              ++RK A+LTQ+++  + G  QS I+ +E+G      DN + LA      +  L 
Sbjct: 8  QRLVSLRKAAQLTQEQLALKIGVTQSMIAHIESGTKDPGKDNKLKLAAFFGVTVEYLF 65


>gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
          Length = 176

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 34/62 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N +++RK+  L+Q+++ N     +  +S+ E G S  + D++I L+  L T +  
Sbjct: 2  KMLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVSV 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|158317497|ref|YP_001510005.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112902|gb|ABW15099.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 287

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          AI+  R       R+ R+   L+Q E+  R+G +   +S +ETG+S+ +   ++ LA  L
Sbjct: 2  AIIDTRTGVGPLVRDWRRRKNLSQSELALRSGTSARHLSFVETGRSSPSRGLLLRLAEQL 61

Query: 74 DTPLWK 79
          + PL +
Sbjct: 62 EIPLRQ 67


>gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC
          29799]
 gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC
          29799]
          Length = 409

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +RKE  L+Q+ +    G ++  +S+ E  K+  +++N I ++      L  
Sbjct: 1  MTLGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAG 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Dechloromonas aromatica RCB]
 gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB]
          Length = 119

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +K+D   L+            N    RK+   TQ+ +  R G     IS +E G   
Sbjct: 1  MAVKKKDSARLAKR-------LGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGAHL 53

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           ++  +  LA  L      LL
Sbjct: 54 PSLPTLDRLAVALRCSAGDLL 74


>gi|16077148|ref|NP_387961.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221307890|ref|ZP_03589737.1| hypothetical protein Bsubs1_00405 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221312212|ref|ZP_03594017.1| hypothetical protein BsubsN3_00405 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221317145|ref|ZP_03598439.1| hypothetical protein BsubsJ_00405 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221321408|ref|ZP_03602702.1| hypothetical protein BsubsS_00405 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|321313750|ref|YP_004206037.1| putative transcriptional regulator [Bacillus subtilis BSn5]
 gi|90101610|sp|O31417|YAZB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          yazB
 gi|2632347|emb|CAB11856.1| putative transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|291482452|dbj|BAI83527.1| hypothetical protein BSNT_00137 [Bacillus subtilis subsp. natto
          BEST195]
 gi|320020024|gb|ADV95010.1| putative transcriptional regulator [Bacillus subtilis BSn5]
          Length = 69

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I+    R  RK    TQ+      G + S + E+E G    +   +   A  L+   
Sbjct: 2  EAEIWGRRIRAFRKLKGYTQEGFAKALGISVSILGEIERGNRLPSAAIIQDAADVLNISA 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 DELAPP 67


>gi|294852923|ref|ZP_06793596.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026]
 gi|294821512|gb|EFG38511.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026]
          Length = 470

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|150006253|ref|YP_001300997.1| hypothetical protein BVU_3764 [Bacteroides vulgatus ATCC 8482]
 gi|149934677|gb|ABR41375.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 142

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           RN R    LTQ+E+  R G  ++ IS++E+GK  + I  M  +   L      +L+
Sbjct: 12 IRNERLRKGLTQEELGKRIGVGKAQISKIESGK-GLTIKTMTKVLDALGMSASIILQ 67


>gi|37527293|ref|NP_930637.1| hypothetical protein plu3419 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786727|emb|CAE15793.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 97

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  + +N  R  R E  +TQK +       QS+I+++E G+  +++   + +AH L    
Sbjct: 21 EYQLVINTLRKARIEKGITQKSLAQALDRPQSFIAKIENGERRLDVVEFVHIAHLLSVDY 80

Query: 78 WKLLK 82
            +L+
Sbjct: 81 VLILE 85


>gi|89101267|ref|ZP_01174087.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911]
 gi|89084017|gb|EAR63198.1| hypothetical protein B14911_01154 [Bacillus sp. NRRL B-14911]
          Length = 110

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
          F    +++RKE ++TQ+++ +  G   ++IS++E G       D +I +A   +    +L
Sbjct: 4  FGQLLKDLRKEYRITQRKLADLIGIDFTYISKIENGSMEPPAEDKIIKIADVFNKDANEL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor
          [Desulfuromonas acetoxidans DSM 684]
 gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor
          [Desulfuromonas acetoxidans DSM 684]
          Length = 191

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 29/59 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +     + +R    +T + + N++  + + IS +E G +T +++ ++ LA      +
Sbjct: 3  KELIGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTTPSVEILMKLAGAFGMSI 61


>gi|328887776|emb|CAJ70012.2| Transcriptional regulator, AbrB family [Clostridium difficile]
          Length = 141

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK  + TQ+E+  +   ++  I++ E+G+S  +I + I LA   +  L  L
Sbjct: 1  MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|320536366|ref|ZP_08036407.1| helix-turn-helix protein [Treponema phagedenis F0421]
 gi|320146778|gb|EFW38353.1| helix-turn-helix protein [Treponema phagedenis F0421]
          Length = 102

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + +R+   ++Q E+  R   + ++I+ +E  +  ++   +  LA +L     +
Sbjct: 10 EILAKNLKRLRRRENISQMELALRANLSTTFINSIENQQRWVSPSTLSKLAKSLQAYPHE 69

Query: 80 LL 81
          L 
Sbjct: 70 LF 71


>gi|312869431|ref|ZP_07729591.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
 gi|311095028|gb|EFQ53312.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
          Length = 91

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+++ L+Q+++   +   QS I+ +E+G +  +ID +  +A+ L   L
Sbjct: 36 LTKARRDSGLSQRDLSTISDVPQSTIARIESG-ANTSIDTLTKIANALGKKL 86


>gi|312879718|ref|ZP_07739518.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM
          12260]
 gi|310783009|gb|EFQ23407.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM
          12260]
          Length = 124

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +++R+   LTQ+ + ++   ++ +I  LE+ +   ++  +  LA  L   +  
Sbjct: 1  MSLGRRIKSLRRALDLTQQNLADKVEVSRIYIQALESNRRLPSMKLLNRLAPALGVEVAD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVQ 63


>gi|294778779|ref|ZP_06744198.1| DNA-binding protein [Bacteroides vulgatus PC510]
 gi|294447435|gb|EFG16016.1| DNA-binding protein [Bacteroides vulgatus PC510]
          Length = 101

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + I  E  +T   +  + G ++  +S + TGKS+ ++DN++ +A  L+  +  L+
Sbjct: 4  RIKEIMSERNVTSAWLAEKVGISKVAVSNIVTGKSSPSLDNLLKIADALNVSITTLI 60


>gi|260843067|ref|YP_003220845.1| putative transcriptional regulator [Escherichia coli O103:H2 str.
          12009]
 gi|260866991|ref|YP_003233393.1| putative transcriptional regulator [Escherichia coli O111:H- str.
          11128]
 gi|257758214|dbj|BAI29711.1| putative transcriptional regulator [Escherichia coli O103:H2 str.
          12009]
 gi|257763347|dbj|BAI34842.1| putative transcriptional regulator [Escherichia coli O111:H- str.
          11128]
 gi|323967329|gb|EGB62751.1| helix-turn-helix protein [Escherichia coli M863]
          Length = 94

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          + +   +  R+ A LTQ+++    G     A + I++ E GK + N + +  LA  L+ P
Sbjct: 1  MLITRLKEARRRAGLTQEKLGILAGLDEASASTRINQYEKGKHSPNFETVSNLAKVLNVP 60

Query: 77 LWKLLKP 83
          +  L  P
Sbjct: 61 VSFLYTP 67


>gi|311032601|ref|ZP_07710691.1| DNA-binding protein [Bacillus sp. m3-13]
          Length = 409

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R +RK+ K+T + +    G  +  +S +E  K+  +++++  +AH L   +  L
Sbjct: 1  MLGDRIRKLRKQKKMTLEALAG-AGLTKGMLSLIENNKANPSMESLTYIAHQLGVDVSDL 59

Query: 81 L 81
          L
Sbjct: 60 L 60


>gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
          Length = 205

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   DA + ER+      R +R     T   +  R G ++S IS +E   ++     +  
Sbjct: 7  PTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDK 64

Query: 69 LAHTLDTPLWKLL 81
          LA  L   L  L 
Sbjct: 65 LAAGLGISLAGLF 77


>gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016]
 gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 69

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N+ + +RKE    Q+++ N  G  +  I+ +E  K    +     LA+ L T + KL
Sbjct: 4  IMKNSIKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKL 63

Query: 81 LKP 83
           +P
Sbjct: 64 FEP 66


>gi|169335281|ref|ZP_02862474.1| hypothetical protein ANASTE_01693 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258019|gb|EDS71985.1| hypothetical protein ANASTE_01693 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 69

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  +  R E  L+Q ++    G ++  IS +ETG+        +IL   LD     
Sbjct: 5  LILKNKLKVARAEKNLSQGDLAKMVGVSRQTISSIETGQFNPTAKLALILCIALDKKFED 64

Query: 80 LL 81
          L 
Sbjct: 65 LF 66


>gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580]
 gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2]
 gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580]
 gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2]
          Length = 113

 Score = 50.0 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 3  LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|307546676|ref|YP_003899155.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218700|emb|CBV43970.1| probable transcriptional regulator [Halomonas elongata DSM 2581]
          Length = 196

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +   TG ++S++S++E G +  +I   + LA  L+  + +L 
Sbjct: 21 RLKLLRKKLGVTLEALAEGTGLSKSYLSKVERGLNNPSIAAALKLAKALNVQVEELF 77


>gi|302529084|ref|ZP_07281426.1| predicted protein [Streptomyces sp. AA4]
 gi|302437979|gb|EFL09795.1| predicted protein [Streptomyces sp. AA4]
          Length = 796

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79
            R  R++A LTQ+++  R+G + S I  LE G+     +  + ++A  L T   +
Sbjct: 52  LRETRRQAGLTQEQLAERSGVSVSTIRRLENGRPVDPRMGTVKLIADALGTTPAE 106


>gi|294632403|ref|ZP_06710963.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292835736|gb|EFF94085.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 207

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LT +      G + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 19 VAPQLRALRRRASLTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLALARVYGTTVSELL 78


>gi|294629900|ref|ZP_06708460.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. e14]
 gi|292833233|gb|EFF91582.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. e14]
          Length = 286

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|167583702|ref|ZP_02376090.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ubonensis Bu]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae
          subsp. larvae BRL-230010]
          Length = 211

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + IF  N + +RK   +TQ ++    G   S +S+ E  K       +  L+   D P
Sbjct: 7  KEIFAANIKRLRKSRGMTQGDLAKILGVGISTVSDWEKAKKYPRAGVIEKLSQYFDMP 64


>gi|146319128|ref|YP_001198840.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33]
 gi|146321334|ref|YP_001201045.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33]
 gi|145689934|gb|ABP90440.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33]
 gi|145692140|gb|ABP92645.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33]
 gi|292558766|gb|ADE31767.1| hypothetical protein SSGZ1_1311 [Streptococcus suis GZ1]
          Length = 178

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 33/70 (47%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                + M F    +++RK+  LTQ++   +    +  +S  E  K+  +++ +I+++ 
Sbjct: 13 PAPRKEKEMNFGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSS 72

Query: 72 TLDTPLWKLL 81
               L +L+
Sbjct: 73 VFSISLDQLI 82


>gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor
          [Saccharopolyspora erythraea NRRL 2338]
          Length = 194

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ +  T   +   TG   S +S LE+G     ++ ++ LA+    PL +L+
Sbjct: 12 VGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGHRKPGLELLLPLANAYQVPLDELV 71


>gi|159045029|ref|YP_001533823.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12]
 gi|157912789|gb|ABV94222.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12]
          Length = 467

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 27/57 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       R +R++A  TQ E+    G + S+++ LE  + ++++  ++ L      
Sbjct: 2  KTFIGPRLRRLRRDANQTQAEMAKALGISNSYVNMLEKNERSVSVPVLLRLFEAYGV 58


>gi|121582747|ref|YP_973189.1| XRE family transcriptional regulator [Polaromonas
          naphthalenivorans CJ2]
 gi|120596009|gb|ABM39447.1| transcriptional regulator, XRE family [Polaromonas
          naphthalenivorans CJ2]
          Length = 98

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + +  G  +S + ++E G+    +  ++ +A  L      L+
Sbjct: 25 FGAAVRALRTEQGVAQETLAHLAGIERSHMGKIERGEHMPTLAIILKIARALGCSSADLM 84

Query: 82 K 82
           
Sbjct: 85 T 85


>gi|330947178|gb|EGH47918.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 75

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 28/67 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
             +            N R +R  A L+Q  +  ++G ++  +  +E G+  +++  +  
Sbjct: 6  HKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLDR 65

Query: 69 LAHTLDT 75
          +A  L+ 
Sbjct: 66 VAEALEV 72


>gi|322375562|ref|ZP_08050074.1| putative transcriptional repressor [Streptococcus sp. C300]
 gi|321279270|gb|EFX56311.1| putative transcriptional repressor [Streptococcus sp. C300]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
 gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis
          ATCC 49957]
          Length = 468

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R +     R +R+E  LTQ+ + +R G + S+++ +E  +  +    +I L HTL   L
Sbjct: 2  ARPLIGRTIRRLRQEQGLTQQALASRLGISASYLNLIEHDQRGVTAALLIKLGHTLQVDL 61

Query: 78 WKL 80
            L
Sbjct: 62 AAL 64


>gi|256783783|ref|ZP_05522214.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289767665|ref|ZP_06527043.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289697864|gb|EFD65293.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 204

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LT +      G + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 16 VAPQLRELRRRAALTLEAAARAAGLSPAHLSRLETGQRQPSLPMLLSLARVYGTTVAELL 75


>gi|227529967|ref|ZP_03960016.1| XRE family transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
 gi|227350152|gb|EEJ40443.1| XRE family transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
          Length = 214

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ R++   TQ++I  R   ++  IS  E  +S  +I  ++ ++      L  LL
Sbjct: 9  FAQKMKSYRQKNNWTQQDIAERLNVSRKTISSWENSRSYPDIFMLVQISDLYRVSLDDLL 68

Query: 82 K 82
          +
Sbjct: 69 R 69


>gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 196

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R IR E  LT +++ N TGF+++ IS++E       I+ +  +A  L+  +
Sbjct: 9  GERVRKIRNERGLTLQDVANFTGFSKALISQIENNIVMPPINTLSKIAKVLNVKM 63


>gi|218281920|ref|ZP_03488252.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989]
 gi|218217063|gb|EEC90601.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989]
          Length = 237

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R EA +TQ E   + G ++  +S  E G+S  ++  +I + +T    L K
Sbjct: 1  MTVAEMIKKTRTEANMTQGEYGAKFGVSRQTVSSWENGRSLPDLQMLIDICNTYHVSLDK 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 218

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R +R+E  L QK++    G   S     E GK   +++ +  L+   +  +  LL
Sbjct: 91  FSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLL 150


>gi|206561879|ref|YP_002232642.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198037919|emb|CAR53864.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
 gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
 gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          clavuligerus ATCC 27064]
 gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
 gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus
          ATCC 27064]
          Length = 509

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++    G +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|170692962|ref|ZP_02884123.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
 gi|170141960|gb|EDT10127.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
          Length = 190

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 14 VGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67


>gi|170736907|ref|YP_001778167.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169819095|gb|ACA93677.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh
          114]
 gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh
          114]
          Length = 192

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR++  ++Q+++   +G     IS +ET KS+ ++ ++  +   L   + +  
Sbjct: 6  VGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLGMSEFF 65

Query: 82 KP 83
          +P
Sbjct: 66 EP 67


>gi|53718188|ref|YP_107174.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|167814172|ref|ZP_02445852.1| putative DNA-binding protein [Burkholderia pseudomallei 91]
 gi|52208602|emb|CAH34538.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
          Length = 158

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R   E   +      R+I   N + +R EA L+Q+ +  +    ++++  LE   ++  +
Sbjct: 75  RPVGEQEPAGEDAPARVI--ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMV 132

Query: 64  DNMIILAHTLDTPLWKLLKP 83
            ++  LA  L   +  LL+P
Sbjct: 133 VDLQDLADALGISIPALLEP 152



 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
             R IRK A L+Q E+  R   A++ ++ +E G+   + +  +  LA  L   +    
Sbjct: 14 ERLRTIRKRAGLSQDELAARASLARTNLASVEQGRRANLRLSTLSRLADVLGVDVLDFF 72


>gi|113971256|ref|YP_735049.1| XRE family transcriptional regulator [Shewanella sp. MR-4]
 gi|114048494|ref|YP_739044.1| XRE family transcriptional regulator [Shewanella sp. MR-7]
 gi|117921538|ref|YP_870730.1| XRE family transcriptional regulator [Shewanella sp. ANA-3]
 gi|113885940|gb|ABI39992.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella sp. MR-4]
 gi|113889936|gb|ABI43987.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella sp. MR-7]
 gi|117613870|gb|ABK49324.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella sp. ANA-3]
          Length = 208

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + R +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L    
Sbjct: 30 GASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 88


>gi|311068514|ref|YP_003973437.1| putative Xre family transcriptional regulator [Bacillus
          atrophaeus 1942]
 gi|310869031|gb|ADP32506.1| putative transcriptional regulator (Xre family); phage SPbeta
          [Bacillus atrophaeus 1942]
          Length = 108

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  R     +Q+++ +  G  +    + ETGK+  ++  +  L++ L      L
Sbjct: 1  MFRERLKKCRTSKGYSQQQMADFLGITRQGYGKYETGKAEPDLTTLTKLSNILGVSTDFL 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
 gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          11V1-d]
 gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2062A-h1]
 gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          3008A-a]
 gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          60-B]
          Length = 105

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I  +  + IRK+ K+TQ E+   TGF Q+ IS  E GK +++  ++   A  L+   
Sbjct: 4  ILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVSP 60


>gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 185

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +    G  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|256852137|ref|ZP_05557524.1| predicted protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661294|ref|ZP_05862207.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|282931547|ref|ZP_06337045.1| DNA-binding protein [Lactobacillus jensenii 208-1]
 gi|256615549|gb|EEU20739.1| predicted protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547749|gb|EEX23726.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|281304321|gb|EFA96425.1| DNA-binding protein [Lactobacillus jensenii 208-1]
          Length = 136

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +N+R+   L+Q+E+ +R   ++  IS+ E G S  +I+ +  L+      L  L+
Sbjct: 6  ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYLV 63


>gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
          Length = 111

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 1  MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|88860753|ref|ZP_01135390.1| hypothetical protein PTD2_05830 [Pseudoalteromonas tunicata D2]
 gi|88817348|gb|EAR27166.1| hypothetical protein PTD2_05830 [Pseudoalteromonas tunicata D2]
          Length = 239

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R    L+Q E+       QS++S+LE  KS  + + +  L   L   L  
Sbjct: 1  MTLGEKLKELRLALNLSQPELAQAAAIEQSYLSKLENDKSLPSNEVLRQLLAALKVDLSV 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|319936291|ref|ZP_08010709.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1]
 gi|319808667|gb|EFW05211.1| hypothetical protein HMPREF9488_01542 [Coprobacillus sp. 29_1]
          Length = 142

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFA-----QSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R    + Q+E+  + G       ++ IS+ E GK T   D +  ++  L+   
Sbjct: 4  GKRIKYVRMLRGMRQEELAGKVGLGYNENGRTRISQYENGKRTPKEDMLEKISEALNVES 63

Query: 78 WKL 80
          + L
Sbjct: 64 YYL 66


>gi|310286536|ref|YP_003937794.1| the helix-turn-helix motif [Bifidobacterium bifidum S17]
 gi|309250472|gb|ADO52220.1| conserved hypothetical protein with the helix-turn-helix motif
          [Bifidobacterium bifidum S17]
          Length = 71

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST---INIDNMIILAHTLDT-PLWKLL 81
           + +R +  +TQ+E+  R+G     I+++ETGK     +++D  + L   L      KLL
Sbjct: 3  LKELRLKRGMTQRELAQRSGVHHVEIAQIETGKRNVRAVSLDTALRLCDALRVANPRKLL 62

Query: 82 KP 83
           P
Sbjct: 63 DP 64


>gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 158

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + +RK   LTQ E     G +++ +S  E G S+++ + +  +    +     +
Sbjct: 1  MIGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGISSVSTELVDRICKKFNVSYLDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074]
 gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP      P  +D +L          R +RKE   T   +   TG + S +S LE+G   
Sbjct: 1  MP-EPTPPPADTDTVLAG---VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRR 56

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           +++ ++ +A   D PL +L+
Sbjct: 57 PSLELLLPIAAAHDVPLDRLV 77


>gi|260662799|ref|ZP_05863693.1| predicted protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552880|gb|EEX25879.1| predicted protein [Lactobacillus fermentum 28-3-CHN]
          Length = 167

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +R    L+Q+++  +   +   I  +E G    +I+ + ++A  L   + +L
Sbjct: 1  MVNNKIKQLRLSKNLSQEQLAEKAKVSVRTIQRMEAGD-DASIETLNLVAGALGVSVKEL 59

Query: 81 L 81
           
Sbjct: 60 F 60


>gi|229551306|ref|ZP_04440031.1| xre family transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|258540940|ref|YP_003175439.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc
          705]
 gi|229315265|gb|EEN81238.1| xre family transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|257152616|emb|CAR91588.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc
          705]
          Length = 189

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N+ + +R   +LTQ ++ ++   ++  +S  ETG+   ++  +  LA      + +L
Sbjct: 5  VLGNHLKTLRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDEL 64

Query: 81 LKP 83
          L+P
Sbjct: 65 LRP 67


>gi|226307191|ref|YP_002767151.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226186308|dbj|BAH34412.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 268

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      +  R+  +LTQ  +    G +   +S +ETG+S  + D ++ L+  LD PL
Sbjct: 4  ETMDVGTELKRWRERRRLTQLGLSAAAGVSTRHLSFIETGRSKPSRDMILHLSECLDVPL 63

Query: 78 WK 79
           +
Sbjct: 64 RQ 65


>gi|222081886|ref|YP_002541251.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726565|gb|ACM29654.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 227

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 38  MAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 97

Query: 80  LLK 82
             +
Sbjct: 98  FFR 100


>gi|170732473|ref|YP_001764420.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|254245889|ref|ZP_04939210.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184]
 gi|124870665|gb|EAY62381.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184]
 gi|169815715|gb|ACA90298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 221

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
             D  + ER+      R++R     T   +  R+G ++S IS +E   ++     +  L
Sbjct: 23 VADDTGINERI--ARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAIVLDKL 80

Query: 70 AHTLDTPLWKLL 81
          A  L   L  L 
Sbjct: 81 AAGLGVSLAALF 92


>gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR
 gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis]
          Length = 111

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 1  MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|328883125|emb|CCA56364.1| putative DNA-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 286

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +++  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRKLREAKNMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTPLWKLL 81
           +    +++
Sbjct: 65 YEVEDERMV 73


>gi|314937188|ref|ZP_07844534.1| putative transcriptional regulator [Staphylococcus hominis subsp.
          hominis C80]
 gi|313654699|gb|EFS18445.1| putative transcriptional regulator [Staphylococcus hominis subsp.
          hominis C80]
          Length = 178

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  ++ R   +LTQ E+  +    +  +S  E GK+  NI  +  L+   D  L +L
Sbjct: 1  MISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLDEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|291523885|emb|CBK89472.1| Helix-turn-helix [Eubacterium rectale DSM 17629]
          Length = 77

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78
          +   N ++ R +AKLTQ ++  +T  + S++S++E      +++I  +  +A+ L   + 
Sbjct: 12 VIGANIKHYRAQAKLTQVQLAEQTKISLSYLSKIEAAGCDKSLSISVLNQIANVLSVEIN 71

Query: 79 KLLK 82
          +  K
Sbjct: 72 EFFK 75


>gi|229029542|ref|ZP_04185622.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271]
 gi|228731741|gb|EEL82643.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271]
          Length = 95

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   + 
Sbjct: 19 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNV 74


>gi|225863714|ref|YP_002749092.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|225789773|gb|ACO29990.1| DNA-binding protein [Bacillus cereus 03BB102]
          Length = 77

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M      + +R+    +Q+++  + G  +  + + E  KS  +IDN+I+L+   + 
Sbjct: 1  MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNV 56


>gi|163746322|ref|ZP_02153680.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45]
 gi|161380207|gb|EDQ04618.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45]
          Length = 195

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          +   +SDA+         + R IRK  KLT  ++      +  W+S++E   ST +I ++
Sbjct: 4  ESSRISDAVTP--RSLGADLRAIRKGRKLTLTDMAEALDRSVGWVSQVERDISTPSIADL 61

Query: 67 IILAHTLDTPLWKLL 81
            +A  L  P+  L 
Sbjct: 62 RRIAEVLGVPISLLF 76


>gi|154496755|ref|ZP_02035451.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC
          29799]
 gi|150274007|gb|EDN01107.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC
          29799]
          Length = 82

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + +R++  LTQ E+    G   +   ++E GK  I +  +  LA         LL
Sbjct: 13 FSANLKYLRQKKGLTQGEMAKLLGVTTNHYQKIEYGKVNIPVLTLCFLADYFGVTTDYLL 72


>gi|157376991|ref|YP_001475591.1| hypothetical protein Ssed_3859 [Shewanella sediminis HAW-EB3]
 gi|157319365|gb|ABV38463.1| hypothetical protein Ssed_3859 [Shewanella sediminis HAW-EB3]
          Length = 233

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          M   N  ++ R E   +Q E+    G  QS++S+LE  KS  + D    L   L 
Sbjct: 1  MTLGNQIKHFRNERGYSQPELAELAGIEQSYLSKLENDKSVPSNDIFRQLLSALS 55


>gi|57234348|ref|YP_181599.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195]
 gi|57224796|gb|AAW39853.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195]
          Length = 222

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
          M      R  RK    T + + +R+G +  +I +LE G+  +I +     L+        
Sbjct: 10 MSIGEKIREFRKARGWTPEYLGSRSGLSGQYIRKLEKGERQSITLTTASKLSSAFGIEPS 69

Query: 79 KLL 81
          KL+
Sbjct: 70 KLI 72


>gi|83950962|ref|ZP_00959695.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
 gi|83838861|gb|EAP78157.1| probable transcriptional regulator [Roseovarius nubinhibens ISM]
          Length = 83

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 32/65 (49%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D I R      N  RN RK  KLTQ E+ +R+G  Q  IS +ET  S   +D +  L   
Sbjct: 2  DQIARSPKDVGNALRNARKAKKLTQAELASRSGIWQRTISTIETSASGAKLDTIFDLLAA 61

Query: 73 LDTPL 77
          LD  +
Sbjct: 62 LDLEI 66


>gi|331700580|ref|YP_004397539.1| helix-turn-helix domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329127923|gb|AEB72476.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL
          B-30929]
          Length = 74

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R    LTQ E+ N    ++  IS  ETG+S+ +I +++ L +  D  L  LL
Sbjct: 3  VSQKIQYCRTLRNLTQDEVGNLLHVSRKTISGWETGRSSPDILSLVKLCNLFDISLDDLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA]
 gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA]
          Length = 176

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK+  ++Q+E+ +  G  +  +S  E  +   ++D    LA      L  L
Sbjct: 1  MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLCGVSLDDL 60


>gi|220911489|ref|YP_002486798.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219858367|gb|ACL38709.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 504

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++RK+A LT   +    G A S +S +E GK    +  +  LA  L+  + +LL
Sbjct: 36 LGRRVRHLRKQAGLTLDGLSAAVGTAPSQLSLIENGKREPKLTLLQHLAAALNVSIDQLL 95


>gi|251794538|ref|YP_003009269.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542164|gb|ACS99182.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 74

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +  N+ R +R    ++TQ+++ ++ G  +  I  LE G  + +++    ++HT   P+
Sbjct: 3  KNLVGNHIRKLRFNLNEMTQQQLADKVGVTRQTIVALEKGNYSPSLELAFRISHTFGLPI 62

Query: 78 WKLL 81
           ++ 
Sbjct: 63 EEIF 66


>gi|119511637|ref|ZP_01630743.1| transcriptional regulator [Nodularia spumigena CCY9414]
 gi|119463709|gb|EAW44640.1| transcriptional regulator [Nodularia spumigena CCY9414]
          Length = 113

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
           + IR+   ++Q ++   TG++   I ++E G+ S++ +D        L      LL
Sbjct: 7  LKKIREAQGISQNDLARITGYSVQNIQKIEQGRVSSLTLDAFDRFCKALGCLPGDLL 63


>gi|75760227|ref|ZP_00740282.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74492280|gb|EAO55441.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 186

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 8  VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67


>gi|309776579|ref|ZP_07671559.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915680|gb|EFP61440.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 189

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  R E K+T K+I   T  +  ++S+LE G ++I  D +  +A  L   +
Sbjct: 6  GELIKQKRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 60


>gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 97

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N  +  RK   L+Q E+ NR G     + + E+G+   +I  +  +A+ L+    
Sbjct: 4  RSDIGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGILNEIANILNISPA 63

Query: 79 KLL 81
          +L+
Sbjct: 64 ELI 66


>gi|291520457|emb|CBK75678.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 111

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 32/65 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  +  +  +  RK  KLTQ+++      +  ++S++E G    N++ +  +A  +D  
Sbjct: 3  VDYKLIGSRIKLYRKSKKLTQEKLAELLAISVGYVSKMERGIEHPNLEMLSSIAQIVDCD 62

Query: 77 LWKLL 81
          +  L+
Sbjct: 63 IANLI 67


>gi|317130649|ref|YP_004096931.1| XRE family transcriptional regulator [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475597|gb|ADU32200.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus
          DSM 2522]
          Length = 68

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R +  LTQ+++  + G  +  IS +E GK    +   + + + ++  L ++ 
Sbjct: 4  NKVKIARTQVNLTQQQLAEKIGVTRQTISLIEKGKYNPTLKLCLDICYAVNKTLDEVF 61


>gi|282860479|ref|ZP_06269545.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282564215|gb|EFB69751.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 161

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|254819472|ref|ZP_05224473.1| XRE family transcriptional regulator [Mycobacterium
          intracellulare ATCC 13950]
          Length = 64

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +   TQ+E+  R+G +++ + +LE G+  I  + +  +A  L     +LL+
Sbjct: 2  GTRIQTLRIDRGYTQEELALRSGVSRNVLIDLEYGRRGILHERLFDIAKALGVSASELLE 61


>gi|239907159|ref|YP_002953900.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239797025|dbj|BAH76014.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
          Length = 110

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  R +R+  ++TQ ++    G  +S IS +E G+  I  +    LA  L+T 
Sbjct: 52  GDALRGMRRLREMTQAQLAAAIGVHKSHISGMERGRRPIGKEMAKRLADALNTS 105


>gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius
          ATCC 11741]
 gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius
          ATCC 11741]
          Length = 220

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L E+          RKE   TQ  +  + G     +S+ E GKS  +   M+ L   L 
Sbjct: 16 ALMEQEKIGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKSMPDASLMLELCQLLK 75

Query: 75 TPLWKLL 81
            + +LL
Sbjct: 76 ISVNELL 82


>gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 508

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  R+ RK    TQ ++ +  G +QS ++ +E G   + ++ +  +   LD+ +  L
Sbjct: 10 GNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQNLTLEMLARIGEALDSEIVSL 67


>gi|261346297|ref|ZP_05973941.1| DNA-binding protein [Providencia rustigianii DSM 4541]
 gi|282565609|gb|EFB71144.1| DNA-binding protein [Providencia rustigianii DSM 4541]
          Length = 113

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          I     R IRK    +  +I  + G +Q   S  E GK  I+ID +
Sbjct: 18 IAGRELRRIRKMKGFSGAKIAKQLGVSQQHYSRYECGKCRISIDTL 63


>gi|254465481|ref|ZP_05078892.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
 gi|206686389|gb|EDZ46871.1| DNA-binding protein [Rhodobacterales bacterium Y4I]
          Length = 182

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     +  R  A  +   +  + G A+S +S+LE G    +++ +  LA  L  PL  
Sbjct: 6  QMIAAAIQRERNRAGKSLSALAAQAGIAKSTLSQLEAGNGNPSVETLWALAAALGVPLSL 65

Query: 80 LLK 82
          L +
Sbjct: 66 LFE 68


>gi|29828186|ref|NP_822820.1| regulatory protein [Streptomyces avermitilis MA-4680]
 gi|29605288|dbj|BAC69355.1| putative regulatory protein [Streptomyces avermitilis MA-4680]
          Length = 208

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LT +      G + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 15 VAPQLRALRRRASLTLEVAARAAGLSPAHLSRLETGQRQPSLPMLLALARIYGTTVSELL 74


>gi|13476100|ref|NP_107670.1| hypothetical protein mll7326 [Mesorhizobium loti MAFF303099]
 gi|14026860|dbj|BAB53456.1| mll7326 [Mesorhizobium loti MAFF303099]
          Length = 192

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  RK+  +T  ++   T  +   +S++E G ++ ++  +  L+  L  P+    +
Sbjct: 7  GREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFR 66


>gi|134300624|ref|YP_001114120.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134053324|gb|ABO51295.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 139

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +RKE  + ++++ N  G     ++  E+G+  ++ D +I LA   D  +  L
Sbjct: 28 GERLRQLRKEKNINREDVANLLGVTVRSVTNYESGQRNLDPDQLIALADYYDVSMDYL 85


>gi|237715765|ref|ZP_04546246.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262408773|ref|ZP_06085319.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645534|ref|ZP_06723230.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CC 2a]
 gi|294806594|ref|ZP_06765430.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides xylanisolvens SD CC 1b]
 gi|229444474|gb|EEO50265.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262353638|gb|EEZ02732.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639108|gb|EFF57430.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides ovatus SD CC 2a]
 gi|294446209|gb|EFG14840.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides xylanisolvens SD CC 1b]
          Length = 104

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +  +     R  R+   LTQ+E+ N  G  ++ IS +E GK  + +  +  +   +   
Sbjct: 33 QSFLIGEAIRKARQSKNLTQEELGNLIGVQRAQISRIENGK-NLTLSTLSKVFKAMGIS 90


>gi|296131090|ref|YP_003638340.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296022905|gb|ADG76141.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 152

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    R  R    LTQ+E+   +G AQ  I+  ETG+  ++ +    L   L      +L
Sbjct: 5  YGTQLRARRIRLGLTQRELARLSGVAQPVIAATETGRRGVSAETRSRLDEALSVRPSVVL 64


>gi|228994858|ref|ZP_04154653.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764883|gb|EEM13642.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442]
          Length = 68

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ +  R +A LTQ+++ +  G  +  +S +E GK   ++   + + + ++  L ++ 
Sbjct: 3  NHVKIARVKADLTQQQLADAVGITRQTVSLIEKGKYNPSLKLCLQICYAVNANLDEIF 60


>gi|189349935|ref|YP_001945563.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189333957|dbj|BAG43027.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 205

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   DA + ER+      R +R     T   +  R G ++S IS +E   ++     +  
Sbjct: 7  PTADDAGINERI--ARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDK 64

Query: 69 LAHTLDTPLWKLL 81
          LA  L   L  L 
Sbjct: 65 LAAGLGISLAGLF 77


>gi|167908369|ref|ZP_02495574.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E K T  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 25 VGEQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84


>gi|167745764|ref|ZP_02417891.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662]
 gi|167654795|gb|EDR98924.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662]
          Length = 149

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N+  N RK++ L+Q+++  + G ++  IS+ ETG++  +I     LA      L +L+
Sbjct: 3  LGNSLFNARKKSGLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDELI 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|78047856|ref|YP_364031.1| hypothetical protein XCV2300 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|121593746|ref|YP_985642.1| XRE family transcriptional regulator [Acidovorax sp. JS42]
 gi|78036286|emb|CAJ23977.1| conserved hypothetical protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|120605826|gb|ABM41566.1| transcriptional regulator, XRE family [Acidovorax sp. JS42]
          Length = 97

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R +  + Q+E+    G  +S + ++E G+   ++  ++ +A  L      L+
Sbjct: 25 FGKAVRAFRMDQGIAQEELAGLAGIERSHMGKIERGEHLPSLALILKIATALKMSGTDLM 84


>gi|84684082|ref|ZP_01011984.1| hypothetical protein 1099457000262_RB2654_16576 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84667835|gb|EAQ14303.1| hypothetical protein RB2654_16576 [Rhodobacterales bacterium
          HTCC2654]
          Length = 97

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R++R++   TQ+E+ +R G ++S+ SE+E+GK   N   +   A   + P ++L+
Sbjct: 4  KLRSLREKRGWTQEEVASRAGMSKSFYSEIESGKKAANSQRIRKFAEVFEVPAFELI 60


>gi|75758326|ref|ZP_00738450.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74494188|gb|EAO57280.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 145

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R+    +Q+++  + G  +  + + E+ KS  +IDN+I+L+   +  + +L+
Sbjct: 6  LGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDELI 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator
          [Bacillus amyloliquefaciens DSM 7]
 gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response
          [Bacillus amyloliquefaciens DSM 7]
 gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response
          [Bacillus amyloliquefaciens LL3]
          Length = 113

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 3  LIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|293365795|ref|ZP_06612501.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|306824899|ref|ZP_07458243.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|306829820|ref|ZP_07463007.1| transcriptional regulator [Streptococcus mitis ATCC 6249]
 gi|307703337|ref|ZP_07640281.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|315613479|ref|ZP_07888387.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296]
 gi|291315728|gb|EFE56175.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|304427831|gb|EFM30924.1| transcriptional regulator [Streptococcus mitis ATCC 6249]
 gi|304433110|gb|EFM36082.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
          73H25AP]
 gi|307623113|gb|EFO02106.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|315314475|gb|EFU62519.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 212

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94


>gi|126179356|ref|YP_001047321.1| XRE family transcriptional regulator [Methanoculleus marisnigri
          JR1]
 gi|125862150|gb|ABN57339.1| transcriptional regulator, XRE family [Methanoculleus marisnigri
          JR1]
          Length = 72

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    +TQ+E+ +     +  I+ +E GK   +I+    +A T    + ++ 
Sbjct: 3  NRIKVFRAMHDMTQEELADAIRVTRRTINSIERGKYNPSIEVAYRIAKTFGVTIEEVF 60


>gi|329941310|ref|ZP_08290589.1| chitinase-promoter-binding protein [Streptomyces
          griseoaurantiacus M045]
 gi|329299841|gb|EGG43740.1| chitinase-promoter-binding protein [Streptomyces
          griseoaurantiacus M045]
          Length = 289

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTPLWKLL 81
           +    +++
Sbjct: 65 YEVEDVRIV 73


>gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1]
 gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1]
          Length = 212

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     ++RK+   TQ+++ ++ G +   IS  ET +S  +ID +  +A      +  LL
Sbjct: 6  FSKKLISLRKKYNFTQQDLADKLGISNKTISRWETSESYPDIDLLPKIADIFHVSIDYLL 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|312131969|ref|YP_003999309.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM
          17132]
 gi|311908515|gb|ADQ18956.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM
          17132]
          Length = 109

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F     ++RKE  ++Q ++  + G  ++ +   E  +   +ID    +A  L+  L  L
Sbjct: 3  FGTTVADLRKEKGISQTDLAAQLGIHKNVLGRYERNEVFPSIDIARKIADILEVSLDYL 61


>gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil
          5]
          Length = 225

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 36 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 95

Query: 80 LLK 82
            +
Sbjct: 96 FFR 98


>gi|187940050|gb|ACD39183.1| transcription regulator [Pseudomonas aeruginosa]
          Length = 75

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      
Sbjct: 6  KALGERIRMQRKVCRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELACDPSS 65

Query: 80 LLKP 83
          LL P
Sbjct: 66 LLPP 69


>gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC
          25827]
 gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC
          25827]
          Length = 119

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK+  LT K++  +   +Q  IS  E G   IN+D + ++ H L   L    
Sbjct: 16 VGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELGCSLSNFF 75


>gi|107027495|ref|YP_625006.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116693793|ref|YP_839326.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|254249535|ref|ZP_04942855.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|105896869|gb|ABF80033.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia AU 1054]
 gi|116651793|gb|ABK12433.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia HI2424]
 gi|124876036|gb|EAY66026.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208]
          Length = 111

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 1  MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1003]
 gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 212

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E ++T  ++    G ++S +SE+E  K+   I     L + L   L  L 
Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94


>gi|302544296|ref|ZP_07296638.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302461914|gb|EFL25007.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 264

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          I+ +  +  R+ A +TQ+E+ +     +S IS +E G+   + ++   L   L+T
Sbjct: 4  IYGDWLKEQREAAGMTQQELADAAIMTRSHISHIEAGRRIPSKEDARRLDQALNT 58


>gi|169343361|ref|ZP_02864365.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
          JGS1495]
 gi|169298447|gb|EDS80533.1| tRNA modification GTPase TrmE [Clostridium perfringens C str.
          JGS1495]
          Length = 64

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            +  R    LTQKE+ N+ G +   +S+ E G    I +  M+ LA  LDT + +L 
Sbjct: 2  KIKLRRISKGLTQKELANKVGISHVTLSKFENGSYENITLRTMLKLAAALDTTVHELF 59


>gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4]
          Length = 185

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +    G  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|311747857|ref|ZP_07721642.1| toxin-antitoxin system, antitoxin component, Xre family
          [Algoriphagus sp. PR1]
 gi|126575850|gb|EAZ80160.1| toxin-antitoxin system, antitoxin component, Xre family
          [Algoriphagus sp. PR1]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 23/68 (33%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              E        + +R +   +Q E+    G +   +  +E  ++   +D +  L    
Sbjct: 2  KTKMENKALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAVPRMDTIKRLFQIF 61

Query: 74 DTPLWKLL 81
               ++L
Sbjct: 62 GMSPEEVL 69


>gi|118444002|ref|YP_878514.1| DNA-binding protein [Clostridium novyi NT]
 gi|118134458|gb|ABK61502.1| DNA-binding protein, putative [Clostridium novyi NT]
          Length = 184

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I   N + IR +  ++   +   TG +++ + ++E G+S   +  +  +A  L   
Sbjct: 7  IIGMNLKTIRTKRNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVS 62


>gi|159185809|ref|NP_357025.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|159140943|gb|AAK89810.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 472

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 31/64 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E++      R +R+ A+ TQ +   R G + S+++++E  +  ++   ++ L       
Sbjct: 3  TEKLFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 MAEL 66


>gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis
          BSn5]
 gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          yqaE
 gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis]
 gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis]
 gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element
          [Bacillus subtilis BSn5]
          Length = 116

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N +  RK+ KLTQ+ + ++ G  +   +  E G    +   +I +++ LD  L  L
Sbjct: 1  MFSENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYL 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|15675737|ref|NP_269911.1| putative transcription regulator [Streptococcus pyogenes M1 GAS]
 gi|19746847|ref|NP_607983.1| transcription regulator [Streptococcus pyogenes MGAS8232]
 gi|21911201|ref|NP_665469.1| putative transcription regulator [Streptococcus pyogenes MGAS315]
 gi|28896578|ref|NP_802928.1| transcription regulator [Streptococcus pyogenes SSI-1]
 gi|50915002|ref|YP_060974.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS10394]
 gi|56808043|ref|ZP_00365843.1| COG1476: Predicted transcriptional regulators [Streptococcus
          pyogenes M49 591]
 gi|71911461|ref|YP_283011.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS5005]
 gi|94991225|ref|YP_599325.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS10270]
 gi|94993168|ref|YP_601267.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS2096]
 gi|139474424|ref|YP_001129140.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo]
 gi|209560078|ref|YP_002286550.1| Putative transcription regulator [Streptococcus pyogenes NZ131]
 gi|306826624|ref|ZP_07459929.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782]
 gi|13622957|gb|AAK34632.1| putative transcription regulator [Streptococcus pyogenes M1 GAS]
 gi|19749087|gb|AAL98482.1| putative transcription regulator [Streptococcus pyogenes
          MGAS8232]
 gi|21905413|gb|AAM80272.1| putative transcription regulator [Streptococcus pyogenes MGAS315]
 gi|28811832|dbj|BAC64761.1| putative transcription regulator [Streptococcus pyogenes SSI-1]
 gi|50904076|gb|AAT87791.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS10394]
 gi|71854243|gb|AAZ52266.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS5005]
 gi|94544733|gb|ABF34781.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS10270]
 gi|94546676|gb|ABF36723.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS2096]
 gi|134272671|emb|CAM30942.1| putative DNA-binding protein [Streptococcus pyogenes str.
          Manfredo]
 gi|209541279|gb|ACI61855.1| Putative transcription regulator [Streptococcus pyogenes NZ131]
 gi|304431202|gb|EFM34206.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782]
          Length = 68

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    L+Q+ + +  G ++  I+ +E G     I+  I +   LD  L  L 
Sbjct: 5  KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLF 61


>gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 237

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E KLTQ+++  +    +  IS  E G  T +I+ +  +A   D  +  LL
Sbjct: 3  FPTRLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDFLL 62



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           F  N + +R +  LT KE+  +       +++LE+GK   +++++I L+  LD P
Sbjct: 77  FSKNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEALDAP 131


>gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
          1003]
 gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
          1003]
          Length = 249

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +     + RKE KL+Q+ + +  G +Q +IS++E+G+S  + + +  L       
Sbjct: 5  YGLRLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSEPSRNFLQALTERFGVS 59


>gi|187932677|ref|YP_001886786.1| hypothetical protein CLL_A2598 [Clostridium botulinum B str.
          Eklund 17B]
 gi|187720830|gb|ACD22051.1| conserved domain protein [Clostridium botulinum B str. Eklund
          17B]
          Length = 66

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  R+  +LTQ+++  + G  +  I  LE GK   ++   + ++  ++TP+ KL 
Sbjct: 4  FICNLKKYRQMKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAVDISRVVETPIEKLF 63


>gi|291560817|emb|CBL39617.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
          Length = 110

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+A  TQ++I +      ++IS +E  +  +N+  +   A  L+  +  LL
Sbjct: 9  VGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL 68

Query: 82 KP 83
          +P
Sbjct: 69 RP 70


>gi|239945391|ref|ZP_04697328.1| regulatory protein [Streptomyces roseosporus NRRL 15998]
 gi|239991848|ref|ZP_04712512.1| regulatory protein [Streptomyces roseosporus NRRL 11379]
          Length = 208

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R+   LT   +  R+G +  ++S++E  ++  ++ ++  +A  L T   +LL
Sbjct: 34 LGNAVRRRRRALDLTLASVAERSGLSVPFLSQIENDRARPSMRSLQRIADALRTTAVELL 93


>gi|227539972|ref|ZP_03970021.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
 gi|227240250|gb|EEI90265.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
          Length = 195

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F  N    R +  LTQ+++    G     I  +E G+       +  +A  LD  + 
Sbjct: 5  RTSF--NLSQKRSDKGLTQQKLAELAGLTTRTIQRIEKGEVIPQGYTLQRIAEALDISIE 62

Query: 79 KL 80
          +L
Sbjct: 63 EL 64


>gi|218677991|ref|ZP_03525888.1| XRE family transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 182

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +    +R+   L  +E+  R+G + S IS +E  K + +ID +  +   L T +
Sbjct: 5  GSKLHELRRRRNLGVRELAARSGISHSTISLIERDKMSPSIDTLSAVLEALGTTM 59


>gi|254461150|ref|ZP_05074566.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083]
 gi|206677739|gb|EDZ42226.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 190

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R +RK   LT  ++ +    +  WIS++E   S  ++ ++  +A  LD P+  L 
Sbjct: 12 LGADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSILF 71


>gi|188590292|ref|YP_001921521.1| hypothetical protein CLH_2140 [Clostridium botulinum E3 str.
          Alaska E43]
 gi|188500573|gb|ACD53709.1| conserved domain protein [Clostridium botulinum E3 str. Alaska
          E43]
          Length = 64

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN    R E   +Q+E+ +  G +Q  +S +E G    +ID M  L       + KL +
Sbjct: 3  NNLILARGEK--SQQEVADDIGISQKTLSAIERGYRNPSIDLMKRLQSYYKVSMLKLFE 59


>gi|149916560|ref|ZP_01905075.1| hypothetical protein RAZWK3B_11662 [Roseobacter sp. AzwK-3b]
 gi|149809534|gb|EDM69393.1| hypothetical protein RAZWK3B_11662 [Roseobacter sp. AzwK-3b]
          Length = 113

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R++   N  R  R+    TQ  +  +    +  + E+E G+ T ++  +  LA  L  
Sbjct: 48  VNRLLNGENALRVYRELRGYTQAALAEKADVNRVTVGEIEIGRKTGSVKTLRKLADALAV 107

Query: 76  PLWKLL 81
            +  L+
Sbjct: 108 TVDDLI 113


>gi|90021251|ref|YP_527078.1| XRE family transcriptional regulator [Saccharophagus degradans
          2-40]
 gi|89950851|gb|ABD80866.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 175

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R++  L+Q+E+  R     S +S +E GK + ++ ++  +   +   L    
Sbjct: 2  GRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKVSPSVASLERILSAIPISLEAFF 60


>gi|78067846|ref|YP_370615.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968591|gb|ABB09971.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia sp. 383]
          Length = 286

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 6/76 (7%)

Query: 12 SDAILRERMI------FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           D++ R+R +           R +R+EAK T  E+      +  ++S++E   + I++ +
Sbjct: 17 PDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISLSS 76

Query: 66 MIILAHTLDTPLWKLL 81
          ++ +A  LD PL  L+
Sbjct: 77 LVNVAKALDVPLSALI 92


>gi|283784131|ref|YP_003363996.1| transcriptional regulator of the polyamine metabolism genes
          [Citrobacter rodentium ICC168]
 gi|282947585|emb|CBG87140.1| transcriptional regulator of the polyamine metabolism genes
          [Citrobacter rodentium ICC168]
          Length = 185

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 199

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79


>gi|228478235|ref|ZP_04062843.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228249914|gb|EEK09184.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 65

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++    G  +  I  +E GK   ++   I +  TLD  L +L 
Sbjct: 6  RLKAARAEHDMTQGDLAEAVGATRQTIGLIEAGKYNPSLGLCIAICKTLDRTLDQLF 62


>gi|126641560|ref|YP_001084544.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC
          17978]
 gi|184157878|ref|YP_001846217.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|239502244|ref|ZP_04661554.1| transcriptional regulator [Acinetobacter baumannii AB900]
 gi|332872520|ref|ZP_08440490.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
 gi|126387444|gb|ABO11942.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC
          17978]
 gi|183209472|gb|ACC56870.1| predicted transcriptional regulator [Acinetobacter baumannii
          ACICU]
 gi|238685471|gb|ACR54771.1| predicted transcriptional regulator [Acinetobacter genomosp.
          13TU]
 gi|255076973|gb|ACU00285.1| transcriptional regulator [Acinetobacter baumannii]
 gi|322508196|gb|ADX03650.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
 gi|323517283|gb|ADX91664.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|323517795|gb|ADX92176.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332739326|gb|EGJ70183.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6014059]
          Length = 197

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R     T   +  R   ++S IS +E G+++     +  LA+ L+ PL ++  
Sbjct: 9  AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68


>gi|154253896|ref|YP_001414720.1| XRE family transcriptional regulator [Parvibaculum
          lavamentivorans DS-1]
 gi|154157846|gb|ABS65063.1| transcriptional regulator, XRE family [Parvibaculum
          lavamentivorans DS-1]
          Length = 97

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R               + F    R  R    + Q E  +R   ++S + ++E G+   
Sbjct: 8  PGRPTGTSTYESESA---LAFGQAVRAARVAQGVAQDEFASRAVISRSHMGKIERGEHVP 64

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
           +  ++ ++  L     +L+ 
Sbjct: 65 TLPLILRISTALRISAAELMT 85


>gi|75910458|ref|YP_324754.1| XRE family transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704183|gb|ABA23859.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC
           29413]
          Length = 531

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             RK+  L+Q+++   TG +QSWI ++E G+    +++ ++L   L   
Sbjct: 483 EARKKLGLSQRDLAKLTGKSQSWIRDIENGRFQAKLEDQMVLRKALGIS 531


>gi|83944600|ref|ZP_00957050.1| transcriptional regulator, XRE family protein [Sulfitobacter sp.
          EE-36]
 gi|83844577|gb|EAP82464.1| transcriptional regulator, XRE family protein [Sulfitobacter sp.
          EE-36]
          Length = 94

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R E  +T +E+  R G ++  +S +E G  T+++  +  +A  L  PL++
Sbjct: 5  IRAARLERNMTAQELAERAGVSRPLLSRVERGDMTVSLGAVFEIATILGVPLFE 58


>gi|322391684|ref|ZP_08065152.1| transcriptional regulator [Streptococcus peroris ATCC 700780]
 gi|321145495|gb|EFX40888.1| transcriptional regulator [Streptococcus peroris ATCC 700780]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++ +  G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDMTQSDLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
 gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 208

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78
                 +  R +  L+Q E+  + G+ ++S I+++ETG   I    ++ +A  LD    
Sbjct: 3  ETIGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGGRDIPKSQVVKIAEILDLTPS 62

Query: 79 KLL 81
           L+
Sbjct: 63 YLM 65


>gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 75

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R E   +TQ E+    G  +  +  +E G+ + +++    +A  L  PL ++ 
Sbjct: 10 NRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRYSPSLETAFQIARALGVPLDEVF 68


>gi|256545809|ref|ZP_05473165.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170]
 gi|256398505|gb|EEU12126.1| UDP-glucose 6-dehydrogenase [Anaerococcus vaginalis ATCC 51170]
          Length = 490

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RKE  LTQK++   TG  ++ IS+LE+     +I+ +  L+ TL+  +  L +
Sbjct: 17 RKEKNLTQKKLEEITGINRTMISKLESQNYIPSIEQLESLSDTLEFEITDLFQ 69


>gi|255282865|ref|ZP_05347420.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
           14469]
 gi|255266639|gb|EET59844.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
           14469]
          Length = 212

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMIILAHTLDTPLWKLL 81
           N + IR     TQ E+  R+G +   I   E     I   + D+M  LA  L   +  L+
Sbjct: 151 NLKRIRTAYGFTQAELAERSGVSLRSIQMYEQRNKNINKASADSMYSLARALGCTMEDLI 210

Query: 82  K 82
           +
Sbjct: 211 E 211


>gi|255100249|ref|ZP_05329226.1| hypothetical protein CdifQCD-6_05535 [Clostridium difficile
          QCD-63q42]
          Length = 72

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82
           + +RKE  +TQ E+  +  +++++IS+LE  +   INI  +I L+  L+    +L +
Sbjct: 2  LKKLRKERGMTQNELAEKANYSRAYISDLENKRYKNINISTIIDLSLALEIDFLELCR 59


>gi|187939866|gb|ACD39004.1| transcription control protein [Pseudomonas aeruginosa]
          Length = 76

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R  A  TQ+++ +     ++++S +E G +   I  ++ LA  L     +++
Sbjct: 7  FGKVLRRRRVAAGFTQEQLAHEAELQRNYVSLMERGVNQPTITTLLKLAIPLGCTAAEIV 66


>gi|254249643|ref|ZP_04942963.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|124876144|gb|EAY66134.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
          Length = 200

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 34/72 (47%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R    P   ++   + +   +  R +R+  K T  +     G ++ ++S++E G ++ ++
Sbjct: 6  RPAMVPPTENSRSADAVALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSL 65

Query: 64 DNMIILAHTLDT 75
           ++  +AH L  
Sbjct: 66 TSLAGIAHALGV 77


>gi|134292501|ref|YP_001116237.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134135658|gb|ABO56772.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia vietnamiensis G4]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E KLT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii
          DPC 6026]
          Length = 114

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N  N+RK   L+Q ++ +R G A S +   ET K   +   ++++A   D  + +LL
Sbjct: 4  LGENISNLRKSRGLSQAQLADRLGIATSTLGMYETNKREPSNQTLLLIADFFDKTVDELL 63


>gi|307704468|ref|ZP_07641378.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307706023|ref|ZP_07642846.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|322376999|ref|ZP_08051492.1| putative transcriptional repressor [Streptococcus sp. M334]
 gi|307620442|gb|EFN99555.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307621988|gb|EFO01015.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|321282806|gb|EFX59813.1| putative transcriptional repressor [Streptococcus sp. M334]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|297156337|gb|ADI06049.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 218

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+ + LT +      G + + +S LET +   ++  ++ LA T  T +  LL
Sbjct: 24 VAPRLRDLRRRSGLTLEAAARLAGLSPAHLSRLETARRQPSLPMLLALARTYGTTVSDLL 83


>gi|159039188|ref|YP_001538441.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157918023|gb|ABV99450.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 196

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R++ + T  E+   TG + S +S LE+G     ++ ++ LA      L +
Sbjct: 10 EAVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGARRPTLELLLPLARAYGVTLDE 69

Query: 80 LL 81
          L+
Sbjct: 70 LV 71


>gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 77

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 32/55 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  +N+R++  L+Q ++ +  G   S I ++ETG+++ +I  +  +A+ LD  
Sbjct: 7  LGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSGSIHTLKKIANKLDVS 61


>gi|325833141|ref|ZP_08165689.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485697|gb|EGC88164.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 71

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 16 LRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          L++R +      R  R+   +TQ+ +    G  Q ++S+LE G+  I +  +  +A  L 
Sbjct: 4  LKDRQVRLGAAIRAERRRQNITQQVLAGMIGTTQDYVSDLEAGEYNIKVGRLWQIADALG 63

Query: 75 TPLWKLL 81
               L+
Sbjct: 64 VHPGDLM 70


>gi|317485947|ref|ZP_07944803.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316922797|gb|EFV44027.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 87

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F       R+E  +TQ  +    G +   IS++E G+    +  +I+LAH L      L+
Sbjct: 10 FGKILVTAREERGITQYRLARLAGRSIQQISQIERGEREPKLSALILLAHALGMEPGTLV 69


>gi|312960308|ref|ZP_07774819.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|311285530|gb|EFQ64100.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 199

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   L   ++      +Q  +S++E  + + ++D +  L   L  PL KL 
Sbjct: 15 LGLQIKRQRQAQDLKLSDVAKIADISQGMLSKIENAQVSTSLDTLSRLCDVLGLPLSKLF 74


>gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 469

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 59


>gi|298530359|ref|ZP_07017761.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509733|gb|EFI33637.1| diguanylate cyclase with PAS/PAC sensor [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 915

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R  R    LTQ ++ +    ++  +  LE G+S  +   +  L   L      
Sbjct: 4  KTFGERVRLFRALKNLTQGQLADMLDISRHHMGCLERGESGPSFGLIRKLCTLLQVHPAS 63

Query: 80 LL 81
          L 
Sbjct: 64 LF 65


>gi|167756656|ref|ZP_02428783.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402]
 gi|237733944|ref|ZP_04564425.1| predicted protein [Mollicutes bacterium D7]
 gi|167702831|gb|EDS17410.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402]
 gi|229383025|gb|EEO33116.1| predicted protein [Coprobacillus sp. D7]
          Length = 139

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS----TINIDNMIILAHTLDTP 76
          +     ++ R     +Q ++   TG + S IS +E G       I++ +++ +AH  +  
Sbjct: 8  LIGKYIKSTRLSKGWSQSKLEKITGLSASSISNIELGNRGVSYNISLPSLVKIAHAFEMS 67

Query: 77 LWKLL 81
          L  LL
Sbjct: 68 LVDLL 72


>gi|167569121|ref|ZP_02361995.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 186

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLF 60


>gi|66395170|ref|YP_239447.1| ORF006 [Staphylococcus phage PT1028]
 gi|62635524|gb|AAX90635.1| ORF006 [Staphylococcus phage PT1028]
          Length = 244

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIIL 69
          M F    +  R   KL+ KE+   +  +Q++IS+LE GK    +++ +  L
Sbjct: 1  MTFGEILKKERVSWKLSVKELSTLSDVSQTYISKLENGKRNFPSLETIFNL 51


>gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 123

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +RK   LT K++  +   A+S IS  E G    + D +   A   +     L
Sbjct: 1  MIGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|84502066|ref|ZP_01000224.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597]
 gi|84390061|gb|EAQ02695.1| hypothetical protein OB2597_18302 [Oceanicola batsensis HTCC2597]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 33/54 (61%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            RK A LTQ+++ +R    QS+++ +E+G+  I++  +I+LA  ++     LL
Sbjct: 3  AARKAAGLTQEQLADRLKCHQSFVARVESGERRIDVIELIVLARAMEVDASTLL 56


>gi|22537286|ref|NP_688137.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|25011245|ref|NP_735640.1| hypothetical protein gbs1196 [Streptococcus agalactiae NEM316]
 gi|77413033|ref|ZP_00789235.1| conserved hypothetical protein [Streptococcus agalactiae 515]
 gi|22534155|gb|AAN00010.1|AE014243_16 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
 gi|23095669|emb|CAD46855.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160931|gb|EAO72040.1| conserved hypothetical protein [Streptococcus agalactiae 515]
 gi|319745147|gb|EFV97471.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813]
          Length = 65

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R +A ++Q  +    G A+  I+ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQTDLNTLF 59


>gi|323528510|ref|YP_004230662.1| Cupin 2 barrel domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323385512|gb|ADX57602.1| Cupin 2 conserved barrel domain protein [Burkholderia sp.
          CCGE1001]
          Length = 190

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 14 VGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67


>gi|167465718|ref|ZP_02330807.1| transcriptional regulator [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 70

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+       R  RK    TQ E+ +  G + S +  +E G  + ++  +  ++  L   L
Sbjct: 2  EKDAVAQRIRAFRKLKGYTQNELADEIGVSISVLGSIERGTRSADLKILQKISDVLKIEL 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 281

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R EPH     L          R  R    ++Q ++    G +Q  IS +E+G+S    D 
Sbjct: 5  RREPHAPPHEL------GQLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDT 58

Query: 66 MIILAHTLDTPLWK 79
          ++ LA TLD PL +
Sbjct: 59 LLTLAQTLDVPLRE 72


>gi|194433805|ref|ZP_03066079.1| transcriptional regulator PuuR [Shigella dysenteriae 1012]
 gi|194417908|gb|EDX34003.1| transcriptional regulator PuuR [Shigella dysenteriae 1012]
 gi|332098182|gb|EGJ03155.1| helix-turn-helix family protein [Shigella dysenteriae 155-74]
          Length = 185

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 211

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R+E  +++ ++    G +   I+  E G    N D ++ +A      +  L
Sbjct: 3  LFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFGVTVDYL 62

Query: 81 L 81
          +
Sbjct: 63 I 63


>gi|75762322|ref|ZP_00742202.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218897473|ref|YP_002445884.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228904512|ref|ZP_04068598.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
 gi|74490185|gb|EAO53521.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218544400|gb|ACK96794.1| DNA-binding protein [Bacillus cereus G9842]
 gi|228855117|gb|EEM99690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222]
          Length = 184

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|16129260|ref|NP_415815.1| DNA-binding transcriptional repressor for the puu divergon
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24112698|ref|NP_707208.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a
          str. 301]
 gi|30062819|ref|NP_836990.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a
          str. 2457T]
 gi|74312331|ref|YP_310750.1| DNA-binding transcriptional repressor PuuR [Shigella sonnei
          Ss046]
 gi|82544245|ref|YP_408192.1| DNA-binding transcriptional repressor PuuR [Shigella boydii
          Sb227]
 gi|82777190|ref|YP_403539.1| DNA-binding transcriptional repressor PuuR [Shigella dysenteriae
          Sd197]
 gi|89108145|ref|AP_001925.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. W3110]
 gi|157158238|ref|YP_001462606.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          E24377A]
 gi|157160810|ref|YP_001458128.1| DNA-binding transcriptional repressor PuuR [Escherichia coli HS]
 gi|170020334|ref|YP_001725288.1| DNA-binding transcriptional repressor PuuR [Escherichia coli ATCC
          8739]
 gi|170080978|ref|YP_001730298.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170680966|ref|YP_001743877.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          SMS-3-5]
 gi|170768785|ref|ZP_02903238.1| transcriptional regulator PuuR [Escherichia albertii TW07627]
 gi|187731345|ref|YP_001880138.1| DNA-binding transcriptional repressor PuuR [Shigella boydii CDC
          3083-94]
 gi|188493518|ref|ZP_03000788.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia
          coli 53638]
 gi|191165095|ref|ZP_03026939.1| transcriptional regulator PuuR [Escherichia coli B7A]
 gi|193062757|ref|ZP_03043851.1| transcriptional regulator PuuR [Escherichia coli E22]
 gi|194425904|ref|ZP_03058460.1| transcriptional regulator PuuR [Escherichia coli B171]
 gi|194437065|ref|ZP_03069164.1| transcriptional regulator PuuR [Escherichia coli 101-1]
 gi|209918542|ref|YP_002292626.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          SE11]
 gi|218553857|ref|YP_002386770.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          IAI1]
 gi|218694875|ref|YP_002402542.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          55989]
 gi|218700021|ref|YP_002407650.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          IAI39]
 gi|218704829|ref|YP_002412348.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          UMN026]
 gi|238900535|ref|YP_002926331.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|253773699|ref|YP_003036530.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161379|ref|YP_003044487.1| DNA-binding transcriptional repressor PuuR [Escherichia coli B
          str. REL606]
 gi|256018450|ref|ZP_05432315.1| DNA-binding transcriptional repressor PuuR [Shigella sp. D9]
 gi|256022988|ref|ZP_05436853.1| DNA-binding transcriptional repressor PuuR [Escherichia sp.
          4_1_40B]
 gi|260843648|ref|YP_003221426.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O103:H2 str. 12009]
 gi|260854998|ref|YP_003228889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O26:H11 str. 11368]
 gi|260867748|ref|YP_003234150.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O111:H- str. 11128]
 gi|293404842|ref|ZP_06648834.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|293409702|ref|ZP_06653278.1| HTH-type transcriptional regulator puuR [Escherichia coli B354]
 gi|293414636|ref|ZP_06657285.1| putrescine utilization regulator [Escherichia coli B185]
 gi|293433661|ref|ZP_06662089.1| HTH-type transcriptional regulator puuR [Escherichia coli B088]
 gi|297516524|ref|ZP_06934910.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          OP50]
 gi|298380485|ref|ZP_06990084.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          FVEC1302]
 gi|300818983|ref|ZP_07099187.1| cupin domain protein [Escherichia coli MS 107-1]
 gi|300822532|ref|ZP_07102671.1| cupin domain protein [Escherichia coli MS 119-7]
 gi|300897366|ref|ZP_07115793.1| cupin domain protein [Escherichia coli MS 198-1]
 gi|300904951|ref|ZP_07122769.1| cupin domain protein [Escherichia coli MS 84-1]
 gi|300919489|ref|ZP_07135988.1| cupin domain protein [Escherichia coli MS 115-1]
 gi|300926689|ref|ZP_07142464.1| cupin domain protein [Escherichia coli MS 182-1]
 gi|300927813|ref|ZP_07143375.1| cupin domain protein [Escherichia coli MS 187-1]
 gi|300935406|ref|ZP_07150404.1| cupin domain protein [Escherichia coli MS 21-1]
 gi|300948384|ref|ZP_07162487.1| cupin domain protein [Escherichia coli MS 116-1]
 gi|300954551|ref|ZP_07166997.1| cupin domain protein [Escherichia coli MS 175-1]
 gi|301017611|ref|ZP_07182285.1| cupin domain protein [Escherichia coli MS 69-1]
 gi|301022735|ref|ZP_07186583.1| cupin domain protein [Escherichia coli MS 196-1]
 gi|301304353|ref|ZP_07210466.1| cupin domain protein [Escherichia coli MS 124-1]
 gi|301326966|ref|ZP_07220258.1| cupin domain protein [Escherichia coli MS 78-1]
 gi|301647199|ref|ZP_07247020.1| cupin domain protein [Escherichia coli MS 146-1]
 gi|307137942|ref|ZP_07497298.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          H736]
 gi|307309944|ref|ZP_07589594.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|309788300|ref|ZP_07682904.1| helix-turn-helix family protein [Shigella dysenteriae 1617]
 gi|309796914|ref|ZP_07691315.1| cupin domain protein [Escherichia coli MS 145-7]
 gi|312971493|ref|ZP_07785668.1| helix-turn-helix family protein [Escherichia coli 1827-70]
 gi|331641864|ref|ZP_08342999.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736]
 gi|331652348|ref|ZP_08353367.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718]
 gi|331662718|ref|ZP_08363641.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143]
 gi|331667689|ref|ZP_08368553.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271]
 gi|331672830|ref|ZP_08373616.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280]
 gi|331682793|ref|ZP_08383412.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299]
 gi|332279502|ref|ZP_08391915.1| transcriptional regulator PuuR [Shigella sp. D9]
 gi|71164830|sp|P0A9U6|PUUR_ECOLI RecName: Full=HTH-type transcriptional regulator puuR
 gi|71164831|sp|P0A9U7|PUUR_SHIFL RecName: Full=HTH-type transcriptional regulator puuR
 gi|1742129|dbj|BAA14868.1| DNA-binding transcriptional repressor [Escherichia coli str. K12
          substr. W3110]
 gi|1787557|gb|AAC74381.1| DNA-binding transcriptional repressor for the puu divergon
          [Escherichia coli str. K-12 substr. MG1655]
 gi|24051617|gb|AAN42915.1| orf, conserved hypothetical protein [Shigella flexneri 2a str.
          301]
 gi|30041067|gb|AAP16797.1| hypothetical protein S1386 [Shigella flexneri 2a str. 2457T]
 gi|58197515|dbj|BAD88707.1| transcriptional repressor [Escherichia coli K-12]
 gi|73855808|gb|AAZ88515.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|81241338|gb|ABB62048.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81245656|gb|ABB66364.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|157066490|gb|ABV05745.1| transcriptional regulator PuuR [Escherichia coli HS]
 gi|157080268|gb|ABV19976.1| transcriptional regulator PuuR [Escherichia coli E24377A]
 gi|169755262|gb|ACA77961.1| transcriptional regulator, XRE family [Escherichia coli ATCC
          8739]
 gi|169888813|gb|ACB02520.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
          substr. DH10B]
 gi|170122333|gb|EDS91264.1| transcriptional regulator PuuR [Escherichia albertii TW07627]
 gi|170518684|gb|ACB16862.1| transcriptional regulator PuuR [Escherichia coli SMS-3-5]
 gi|187428337|gb|ACD07611.1| transcriptional regulator PuuR [Shigella boydii CDC 3083-94]
 gi|188488717|gb|EDU63820.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia
          coli 53638]
 gi|190904867|gb|EDV64572.1| transcriptional regulator PuuR [Escherichia coli B7A]
 gi|192931879|gb|EDV84479.1| transcriptional regulator PuuR [Escherichia coli E22]
 gi|194415959|gb|EDX32225.1| transcriptional regulator PuuR [Escherichia coli B171]
 gi|194424048|gb|EDX40036.1| transcriptional regulator PuuR [Escherichia coli 101-1]
 gi|209911801|dbj|BAG76875.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218351607|emb|CAU97319.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
 gi|218360625|emb|CAQ98183.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
 gi|218370007|emb|CAR17781.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
 gi|218431926|emb|CAR12811.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
 gi|238860975|gb|ACR62973.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
 gi|242377078|emb|CAQ31804.1| DNA-binding transcriptional repressor [Escherichia coli
          BL21(DE3)]
 gi|253324743|gb|ACT29345.1| transcriptional regulator, XRE family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973280|gb|ACT38951.1| DNA-binding transcriptional repressor [Escherichia coli B str.
          REL606]
 gi|253977494|gb|ACT43164.1| DNA-binding transcriptional repressor [Escherichia coli
          BL21(DE3)]
 gi|257753647|dbj|BAI25149.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O26:H11 str. 11368]
 gi|257758795|dbj|BAI30292.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O103:H2 str. 12009]
 gi|257764104|dbj|BAI35599.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O111:H- str. 11128]
 gi|260449568|gb|ACX39990.1| transcriptional regulator, XRE family [Escherichia coli DH1]
 gi|281600723|gb|ADA73707.1| HTH-type transcriptional regulator puuR [Shigella flexneri
          2002017]
 gi|284921184|emb|CBG34250.1| transcriptional regulator of the polyamine metabolism genes
          [Escherichia coli 042]
 gi|291324480|gb|EFE63902.1| HTH-type transcriptional regulator puuR [Escherichia coli B088]
 gi|291427050|gb|EFF00077.1| transcriptional regulator [Escherichia coli FVEC1412]
 gi|291434694|gb|EFF07667.1| putrescine utilization regulator [Escherichia coli B185]
 gi|291470170|gb|EFF12654.1| HTH-type transcriptional regulator puuR [Escherichia coli B354]
 gi|298277927|gb|EFI19441.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          FVEC1302]
 gi|299881132|gb|EFI89343.1| cupin domain protein [Escherichia coli MS 196-1]
 gi|300318461|gb|EFJ68245.1| cupin domain protein [Escherichia coli MS 175-1]
 gi|300358850|gb|EFJ74720.1| cupin domain protein [Escherichia coli MS 198-1]
 gi|300400105|gb|EFJ83643.1| cupin domain protein [Escherichia coli MS 69-1]
 gi|300403100|gb|EFJ86638.1| cupin domain protein [Escherichia coli MS 84-1]
 gi|300413443|gb|EFJ96753.1| cupin domain protein [Escherichia coli MS 115-1]
 gi|300417265|gb|EFK00576.1| cupin domain protein [Escherichia coli MS 182-1]
 gi|300452059|gb|EFK15679.1| cupin domain protein [Escherichia coli MS 116-1]
 gi|300459384|gb|EFK22877.1| cupin domain protein [Escherichia coli MS 21-1]
 gi|300464098|gb|EFK27591.1| cupin domain protein [Escherichia coli MS 187-1]
 gi|300524948|gb|EFK46017.1| cupin domain protein [Escherichia coli MS 119-7]
 gi|300528444|gb|EFK49506.1| cupin domain protein [Escherichia coli MS 107-1]
 gi|300840340|gb|EFK68100.1| cupin domain protein [Escherichia coli MS 124-1]
 gi|300846437|gb|EFK74197.1| cupin domain protein [Escherichia coli MS 78-1]
 gi|301074685|gb|EFK89491.1| cupin domain protein [Escherichia coli MS 146-1]
 gi|306909662|gb|EFN40156.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|308119442|gb|EFO56704.1| cupin domain protein [Escherichia coli MS 145-7]
 gi|308923682|gb|EFP69185.1| helix-turn-helix family protein [Shigella dysenteriae 1617]
 gi|309701599|emb|CBJ00906.1| transcriptional regulator of the polyamine metabolism genes
          [Escherichia coli ETEC H10407]
 gi|310336090|gb|EFQ01290.1| helix-turn-helix family protein [Escherichia coli 1827-70]
 gi|313649492|gb|EFS13923.1| helix-turn-helix family protein [Shigella flexneri 2a str. 2457T]
 gi|315060554|gb|ADT74881.1| DNA-binding transcriptional repressor [Escherichia coli W]
 gi|315135938|dbj|BAJ43097.1| transcriptional regulator [Escherichia coli DH1]
 gi|315254342|gb|EFU34310.1| cupin domain protein [Escherichia coli MS 85-1]
 gi|315619382|gb|EFU99926.1| helix-turn-helix family protein [Escherichia coli 3431]
 gi|320180265|gb|EFW55200.1| Putrescine utilization regulator [Shigella boydii ATCC 9905]
 gi|320187693|gb|EFW62369.1| Putrescine utilization regulator [Shigella flexneri CDC 796-83]
 gi|320199337|gb|EFW73928.1| Putrescine utilization regulator [Escherichia coli EC4100B]
 gi|323153351|gb|EFZ39608.1| helix-turn-helix family protein [Escherichia coli EPECa14]
 gi|323162336|gb|EFZ48191.1| helix-turn-helix family protein [Escherichia coli E128010]
 gi|323168281|gb|EFZ53966.1| helix-turn-helix family protein [Shigella sonnei 53G]
 gi|323172339|gb|EFZ57976.1| helix-turn-helix family protein [Escherichia coli LT-68]
 gi|323179742|gb|EFZ65303.1| helix-turn-helix family protein [Escherichia coli 1180]
 gi|323185537|gb|EFZ70898.1| helix-turn-helix family protein [Escherichia coli 1357]
 gi|323378885|gb|ADX51153.1| Cupin 2 conserved barrel domain protein [Escherichia coli KO11]
 gi|323937624|gb|EGB33892.1| cupin domain-containing protein [Escherichia coli E1520]
 gi|323942417|gb|EGB38587.1| cupin domain-containing protein [Escherichia coli E482]
 gi|323947750|gb|EGB43753.1| cupin domain-containing protein [Escherichia coli H120]
 gi|323962457|gb|EGB58039.1| cupin domain-containing protein [Escherichia coli H489]
 gi|323964563|gb|EGB60037.1| cupin domain-containing protein [Escherichia coli M863]
 gi|323973458|gb|EGB68644.1| cupin domain-containing protein [Escherichia coli TA007]
 gi|323977066|gb|EGB72153.1| cupin domain-containing protein [Escherichia coli TW10509]
 gi|324117506|gb|EGC11412.1| cupin domain-containing protein [Escherichia coli E1167]
 gi|327253996|gb|EGE65625.1| helix-turn-helix family protein [Escherichia coli STEC_7v]
 gi|331038662|gb|EGI10882.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736]
 gi|331050626|gb|EGI22684.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718]
 gi|331061140|gb|EGI33104.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143]
 gi|331065274|gb|EGI37169.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271]
 gi|331070051|gb|EGI41420.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280]
 gi|331080424|gb|EGI51603.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299]
 gi|332091697|gb|EGI96777.1| helix-turn-helix family protein [Shigella boydii 5216-82]
 gi|332094835|gb|EGI99879.1| helix-turn-helix family protein [Shigella boydii 3594-74]
 gi|332101854|gb|EGJ05200.1| transcriptional regulator PuuR [Shigella sp. D9]
 gi|332342898|gb|AEE56232.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          UMNK88]
 gi|332757959|gb|EGJ88286.1| helix-turn-helix family protein [Shigella flexneri 4343-70]
 gi|332759548|gb|EGJ89856.1| helix-turn-helix family protein [Shigella flexneri 2747-71]
 gi|332760399|gb|EGJ90689.1| helix-turn-helix family protein [Shigella flexneri K-671]
 gi|332767540|gb|EGJ97734.1| DNA-binding transcriptional repressor [Shigella flexneri 2930-71]
 gi|333005778|gb|EGK25296.1| helix-turn-helix family protein [Shigella flexneri K-218]
 gi|333007643|gb|EGK27121.1| helix-turn-helix family protein [Shigella flexneri K-272]
 gi|333019110|gb|EGK38400.1| helix-turn-helix family protein [Shigella flexneri K-304]
 gi|333019578|gb|EGK38858.1| helix-turn-helix family protein [Shigella flexneri K-227]
          Length = 185

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|262202131|ref|YP_003273339.1| XRE family transcriptional regulator [Gordonia bronchialis DSM
          43247]
 gi|262085478|gb|ACY21446.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 116

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R +R +   T +E+      +  ++SE+E G+   + + +  +   LD  + 
Sbjct: 6  REALGDSLRRVRTDQGRTLREVSTDARVSLGYLSEVERGQKEASSELLAAICDALDVEIA 65

Query: 79 KLL 81
           LL
Sbjct: 66 DLL 68


>gi|229553416|ref|ZP_04442141.1| probable transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|258538560|ref|YP_003173059.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705]
 gi|229313297|gb|EEN79270.1| probable transcriptional regulator [Lactobacillus rhamnosus
          LMS2-1]
 gi|257150236|emb|CAR89208.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705]
          Length = 100

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R+ A L+Q+E+ N++G  ++ I+ +E G S  +I+ +  +A+ L   
Sbjct: 47 EARQNAGLSQQELANKSGVPKTTIARIERG-SNTSIETLTKIANALGKQ 94


>gi|298345338|ref|YP_003718025.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063]
 gi|315655757|ref|ZP_07908655.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
           51333]
 gi|298235399|gb|ADI66531.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063]
 gi|315489821|gb|EFU79448.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 112

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RKEA L+Q E+    G  +  I  +E      +++   ++   L   L +L 
Sbjct: 53  ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELF 110


>gi|227500587|ref|ZP_03930636.1| possible helix-turn-helix domain protein [Anaerococcus tetradius
          ATCC 35098]
 gi|227217292|gb|EEI82634.1| possible helix-turn-helix domain protein [Anaerococcus tetradius
          ATCC 35098]
          Length = 289

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF    ++IR +  L+Q+ +   +      IS +E  K   ++DN+  L+  L   L 
Sbjct: 7  KYIFGKFLKDIRNKRNLSQERLAELSFINIKTISNMENAKVNFDLDNLDRLSSILSVDLI 66

Query: 79 K 79
          +
Sbjct: 67 E 67


>gi|222106747|ref|YP_002547538.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221737926|gb|ACM38822.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 219

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 8  EPHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
                A+   R     M   +  R  RK+  +T  ++   TG +   +S++E G  + +
Sbjct: 16 LAQDPHAVREPRANNLEMAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISAS 75

Query: 63 IDNMIILAHTLDTPLWKLLK 82
          +  +  L+  L  P+    K
Sbjct: 76 LGTLQSLSKALGVPMTAFFK 95


>gi|222081446|ref|YP_002540809.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726125|gb|ACM29214.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 222

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           PR    +         +R +     R IR  + L+Q E+ ++   +   I + E+GK+ +
Sbjct: 60  PRSAGRDIDTPSIHPIDRHV-GQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRM 118

Query: 62  NIDNMIILAHTLDTPL 77
           +   +  +A+ L+ P+
Sbjct: 119 SASVLYEIANCLNVPI 134


>gi|196045124|ref|ZP_03112357.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196024126|gb|EDX62800.1| DNA-binding protein [Bacillus cereus 03BB108]
          Length = 403

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +++RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKSLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|89055867|ref|YP_511318.1| XRE family transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865416|gb|ABD56293.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1]
          Length = 469

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 30/65 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +++      R+IR    LTQK+   + G +  +++++E     ++   ++ LA     
Sbjct: 2  PTQKLYVGAKLRSIRTGVGLTQKDFAAKLGISLPYLNQMENNNRPLSTAVLMGLAQDFGV 61

Query: 76 PLWKL 80
           + +L
Sbjct: 62 DVTEL 66


>gi|21242911|ref|NP_642493.1| hypothetical protein XAC2176 [Xanthomonas axonopodis pv. citri
          str. 306]
 gi|21108408|gb|AAM37029.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 98

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R E  + Q+ + N     +S + ++E G+    +  +  +A  L   + +L+
Sbjct: 25 FGAAVRAARTEQGIGQETLANLAAVERSHMGKIERGEHLPTLAIIFKIARALGCSVAELM 84


>gi|15801869|ref|NP_287889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H7 EDL933]
 gi|15831130|ref|NP_309903.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H7 str. Sakai]
 gi|168749060|ref|ZP_02774082.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4113]
 gi|168755982|ref|ZP_02780989.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4401]
 gi|168762686|ref|ZP_02787693.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4501]
 gi|168769383|ref|ZP_02794390.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4486]
 gi|168775126|ref|ZP_02800133.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4196]
 gi|168782830|ref|ZP_02807837.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4076]
 gi|168788374|ref|ZP_02813381.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC869]
 gi|168799611|ref|ZP_02824618.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC508]
 gi|208811113|ref|ZP_03252946.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4206]
 gi|208815007|ref|ZP_03256186.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4045]
 gi|208820275|ref|ZP_03260595.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4042]
 gi|209400310|ref|YP_002270360.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4115]
 gi|217329459|ref|ZP_03445539.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          TW14588]
 gi|254792894|ref|YP_003077731.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H7 str. TW14359]
 gi|261224290|ref|ZP_05938571.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7
          str. FRIK2000]
 gi|261257454|ref|ZP_05949987.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7
          str. FRIK966]
 gi|291282394|ref|YP_003499212.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7
          str. CB9615]
 gi|12515475|gb|AAG56505.1|AE005376_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361341|dbj|BAB35299.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769283|gb|EDU33127.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4196]
 gi|188016620|gb|EDU54742.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4113]
 gi|188999714|gb|EDU68700.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4076]
 gi|189356802|gb|EDU75221.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4401]
 gi|189361581|gb|EDU80000.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4486]
 gi|189367033|gb|EDU85449.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4501]
 gi|189371817|gb|EDU90233.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC869]
 gi|189377991|gb|EDU96407.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC508]
 gi|208724619|gb|EDZ74327.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4206]
 gi|208731655|gb|EDZ80343.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4045]
 gi|208740398|gb|EDZ88080.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4042]
 gi|209161710|gb|ACI39143.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          EC4115]
 gi|209771738|gb|ACI84181.1| hypothetical protein ECs1876 [Escherichia coli]
 gi|209771740|gb|ACI84182.1| hypothetical protein ECs1876 [Escherichia coli]
 gi|209771742|gb|ACI84183.1| hypothetical protein ECs1876 [Escherichia coli]
 gi|209771744|gb|ACI84184.1| hypothetical protein ECs1876 [Escherichia coli]
 gi|209771746|gb|ACI84185.1| hypothetical protein ECs1876 [Escherichia coli]
 gi|217317898|gb|EEC26326.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str.
          TW14588]
 gi|254592294|gb|ACT71655.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7
          str. TW14359]
 gi|290762267|gb|ADD56228.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7
          str. CB9615]
 gi|320189942|gb|EFW64594.1| Putrescine utilization regulator [Escherichia coli O157:H7 str.
          EC1212]
 gi|320637202|gb|EFX07028.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H7 str. G5101]
 gi|320642569|gb|EFX11817.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H- str. 493-89]
 gi|320647922|gb|EFX16630.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H- str. H 2687]
 gi|320653523|gb|EFX21628.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320659223|gb|EFX26812.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320664016|gb|EFX31203.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H7 str. LSU-61]
 gi|326341032|gb|EGD64825.1| Putrescine utilization regulator [Escherichia coli O157:H7 str.
          1125]
 gi|326343272|gb|EGD67039.1| Putrescine utilization regulator [Escherichia coli O157:H7 str.
          1044]
          Length = 185

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
          Length = 137

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+    +Q ++  + G  +  + + E  KS  +IDN+I+L+   +  L +L+
Sbjct: 3  LGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|330980471|gb|EGH78574.1| peptidase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 109

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78
          F +  +  R+ AKL Q E+  R G  Q+ IS+LE GKS     ++  +A       LW
Sbjct: 3  FKDRLKAARQHAKLNQAELAVRAGITQTSISDLERGKSKATA-HVAKIADVCGVNALW 59


>gi|309776168|ref|ZP_07671159.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308916119|gb|EFP61868.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 92

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +     R +R++A +T +E+ NR+    ++I ++E G S  +I  + IL   +D  
Sbjct: 8  PATELTGMKLRELREKAGMTLRELANRSMIDFTYIKKIELGVSDPSIITLDILLQAMDLN 67

Query: 77 LWKLL 81
          L    
Sbjct: 68 LQDFF 72


>gi|302038624|ref|YP_003798946.1| putative HTH-type transcriptional regulator [Candidatus
          Nitrospira defluvii]
 gi|300606688|emb|CBK43021.1| putative HTH-type transcriptional regulator [Candidatus
          Nitrospira defluvii]
          Length = 202

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 36/66 (54%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R++    +  R +RK   L+ + + ++ GF+ S+IS++E  +++ +I +   +A  L   
Sbjct: 19 RKKTHVGDIVRRLRKSRHLSVRTLADKCGFSPSFISQVELRQASPSIASTERIASALGVT 78

Query: 77 LWKLLK 82
          L +  +
Sbjct: 79 LGEFFR 84


>gi|288942483|ref|YP_003444723.1| XRE family transcriptional regulator [Allochromatium vinosum DSM
          180]
 gi|288897855|gb|ADC63691.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM
          180]
          Length = 95

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +     +  R+  +++Q  +  +   ++S++SELE+GK    ID +   + T   P
Sbjct: 1  MLNQALKLTRQFHRMSQAALAEKLSISKSYLSELESGKKIPTIDILERYSATFKVP 56


>gi|257486496|ref|ZP_05640537.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331009982|gb|EGH90038.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 171

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       R IR    LTQ+ + +    +++++S +E  ++   I+    LA  L     
Sbjct: 14 KQALAAVVRTIRGNLGLTQESLAHAA--SRTYLSRIENAETNPTIEKFAELAEALGLNPV 71

Query: 79 KLL 81
           L+
Sbjct: 72 SLM 74


>gi|253690483|ref|YP_003019673.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251757061|gb|ACT15137.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 111

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F    +  R    L+QK++    G     A + I+  E G    +I+    LA  LD P
Sbjct: 10 VFCQRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIETAQQLAEALDVP 69

Query: 77 L 77
          L
Sbjct: 70 L 70


>gi|228921209|ref|ZP_04084538.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228838424|gb|EEM83736.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 184

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|326440324|ref|ZP_08215058.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 275

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          D     R  F    R +R E   TQ+E+  R G + + IS +ETG+    
Sbjct: 7  DPEKSPRAAFGARLRTLRDERGWTQEELAQRIGCSATHISAIETGRRPPT 56


>gi|254505711|ref|ZP_05117857.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          16]
 gi|219551364|gb|EED28343.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus
          16]
          Length = 207

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGEKIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|182438820|ref|YP_001826539.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178467336|dbj|BAG21856.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
          Length = 275

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  RK+ +P   D        F    R  R     TQ E+  R G + + IS +ETG+  
Sbjct: 1  MVNRKQLDPEDPDVS------FGLQLRQARDARGWTQDELAGRMGCSGTHISAVETGRRP 54

Query: 61 IN 62
            
Sbjct: 55 PT 56


>gi|163745028|ref|ZP_02152388.1| DNA-binding protein [Oceanibulbus indolifex HEL-45]
 gi|161381846|gb|EDQ06255.1| DNA-binding protein [Oceanibulbus indolifex HEL-45]
          Length = 227

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R  RD   +++   +         +  R+   L+   +   +G ++S +S++E G+S+  
Sbjct: 32  RAPRDISAMTENNDKILTQLPARLKEARQGQGLSLDAVAKLSGVSRSMVSQIERGESSPT 91

Query: 63  IDNMIILAHTLDTPLWKLL 81
           I  +  L   L      LL
Sbjct: 92  IATLWNLTRALQVDFAGLL 110


>gi|148807441|gb|ABR13513.1| predicted transcriptional regulator [Pseudomonas aeruginosa]
          Length = 73

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      
Sbjct: 6  KALGERIRVQRKACRISQDALALACNIDRSYVGRIERGEVNITVEKLYRIASVLACDPCG 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|150398491|ref|YP_001328958.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419]
 gi|150030006|gb|ABR62123.1| transcriptional regulator, XRE family [Sinorhizobium medicae
           WSM419]
          Length = 234

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 2   PRRKRDEP--HLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL 54
           P   R  P      AI   R         +  R  RK+  +T  ++ + T  +   +S++
Sbjct: 20  PGLTRVTPLTQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKI 79

Query: 55  ETGKSTINIDNMIILAHTLDTPLWKLLK 82
           E G ++ ++  +  L+  L  P+    +
Sbjct: 80  ENGNTSPSLTTLQTLSRALGVPITAFFR 107


>gi|83589108|ref|YP_429117.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572022|gb|ABC18574.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 115

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + + +R+   L Q+++    G  +  ++  E G     ++ ++ L+      L +L+
Sbjct: 4  FGESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELV 63


>gi|328957520|ref|YP_004374906.1| putative transcriptional regulator (Xre family); skin element
          [Carnobacterium sp. 17-4]
 gi|328673844|gb|AEB29890.1| putative transcriptional regulator (Xre family); skin element
          [Carnobacterium sp. 17-4]
          Length = 166

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE KLTQ+++  +   +Q  +S  ETGK+  +I ++I LA   D  L  LL
Sbjct: 7  LKQKRKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSLDNLL 62


>gi|310825965|ref|YP_003958322.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612]
 gi|308737699|gb|ADO35359.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612]
          Length = 150

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK  + TQ+E+ +R G ++  +++ E G+S  ++ N   LA   +  L  L+
Sbjct: 8  NLTALRKMNQYTQEEVASRIGVSRQAVAKWENGESAPDVINCNALAEMYNVSLDDLV 64


>gi|307324180|ref|ZP_07603388.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889911|gb|EFN20889.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 297

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+E  +T +E+      +QS IS LE G+ +I+  ++  L  T    
Sbjct: 9  VRRRRLGQELRRLRQEKGMTAEEVAEELMVSQSKISRLENGRRSISQRDVRDLCRTYKVE 68

Query: 77 LWKLL 81
             L+
Sbjct: 69 DKALV 73


>gi|300715975|ref|YP_003740778.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299061811|emb|CAX58927.1| predicted transcriptional regulator [Erwinia billingiae Eb661]
          Length = 188

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++R E   + + +   TG +++ +S +E G+++     M  L       + +LL
Sbjct: 11 LAQRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCIAYGLTMSRLL 70


>gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC
          29799]
 gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC
          29799]
          Length = 360

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++    N R +RKE  LTQ+++    G     +S+ ETG    ++  M+ LA   +T + 
Sbjct: 2  KVCLAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVD 61

Query: 79 KLL 81
           LL
Sbjct: 62 VLL 64


>gi|254254842|ref|ZP_04948159.1| transcriptional regulator XRE family with cupin sensor domain
          [Burkholderia dolosa AUO158]
 gi|124899487|gb|EAY71330.1| transcriptional regulator XRE family with cupin sensor domain
          [Burkholderia dolosa AUO158]
          Length = 203

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R+     +               + +R E +LT  ++    G ++S +SE+E  K+   I
Sbjct: 8  RRTPASAVPQPPATTPPRVGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTI 67

Query: 64 DNMIILAHTLDTPLWKLL 81
               L + L   L +L 
Sbjct: 68 AVAWRLTNALGITLDELF 85


>gi|24374516|ref|NP_718559.1| prophage LambdaSo, Cro/CI family transcriptional regulator
          [Shewanella oneidensis MR-1]
 gi|24349105|gb|AAN56003.1|AE015737_1 prophage LambdaSo, transcriptional regulator, Cro/CI family
          [Shewanella oneidensis MR-1]
          Length = 272

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 19 RMIFVNNFRNIRKEAKL-TQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +     N + +R +A + +Q  +    G  +QS +   E G   ++  +   LA  L+  
Sbjct: 7  KKKVGRNIKRLRLKAGIKSQAALAELCGWKSQSRVGNYEAGTRAVSAIDAETLAKVLNVT 66

Query: 77 LWKLL 81
            ++L
Sbjct: 67 PAEIL 71


>gi|328551781|gb|AEB22273.1| putative transcriptional regulator [Bacillus amyloliquefaciens
          TA208]
 gi|328910041|gb|AEB61637.1| Uncharacterized HTH-type transcriptional regulator yazB [Bacillus
          amyloliquefaciens LL3]
          Length = 75

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I+    R  RK    TQ+      G + S + E+E G    +   +   A  L+   
Sbjct: 2  EAEIWGRRIRAFRKLKGYTQEGFAKAIGISVSILGEIERGNRLPSAVIIRDAADALNISA 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 EELAPP 67


>gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 225

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 36 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 95

Query: 80 LLK 82
            +
Sbjct: 96 FFR 98


>gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens
          FD-1]
          Length = 217

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F      +R E  +TQ E+    G+ ++S I+++E+G+   +   +  +A  LDT   
Sbjct: 1  MTFGERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERDPHQSMIAAIAKALDTTPA 60

Query: 79 KLL 81
           L+
Sbjct: 61 YLM 63


>gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC
          49176]
 gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC
          49176]
          Length = 220

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +  LTQKE+ ++ G +   IS+ ETGKS  +I     L + L+  + +LL
Sbjct: 10 IATTRTKIGLTQKELADKIGVSDKTISKWETGKSLPDISYYESLCNALNIKVNELL 65


>gi|169796192|ref|YP_001713985.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157074|ref|YP_002319119.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|215483646|ref|YP_002325867.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|301347624|ref|ZP_07228365.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056]
 gi|301510309|ref|ZP_07235546.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058]
 gi|301596869|ref|ZP_07241877.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059]
 gi|332850551|ref|ZP_08432827.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332865761|ref|ZP_08436556.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
 gi|169149119|emb|CAM86996.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213056234|gb|ACJ41136.1| transcriptional regulator, XRE family [Acinetobacter baumannii
          AB0057]
 gi|213985862|gb|ACJ56161.1| Helix-turn-helix family protein [Acinetobacter baumannii
          AB307-0294]
 gi|332730613|gb|EGJ61927.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013150]
 gi|332735102|gb|EGJ66186.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii
          6013113]
          Length = 197

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R     T   +  R   ++S IS +E G+++     +  LA+ L+ PL ++  
Sbjct: 9  AHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEVPLTQIFT 68


>gi|160937793|ref|ZP_02085152.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439232|gb|EDP16985.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC
          BAA-613]
          Length = 199

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R + K++Q+ + ++ G ++  +++ E G S     N+  LA   +  + +
Sbjct: 1  MALSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISE 60

Query: 80 LLKP 83
          L+ P
Sbjct: 61 LVDP 64


>gi|319637930|ref|ZP_07992696.1| XRE family Transcriptional regulator [Neisseria mucosa C102]
 gi|317401085|gb|EFV81740.1| XRE family Transcriptional regulator [Neisseria mucosa C102]
          Length = 86

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLD 74
          + IF   F+  RK   LTQ+++    G     A + I+  E G    +++ +  +A  L+
Sbjct: 4  QEIFTRRFKEARKAKNLTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLQKIAEVLE 63

Query: 75 TPL 77
           P 
Sbjct: 64 VPP 66


>gi|315223084|ref|ZP_07864952.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315187773|gb|EFU21520.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 79

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ+++ +  G  +  I  +E GK   ++   I +   LD  L +L 
Sbjct: 15 KLKMARVEHDLTQRDLADAIGVTRQTIGLIEAGKYNPSLGLCIAICKRLDKTLDQLF 71


>gi|312889566|ref|ZP_07749116.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311297914|gb|EFQ75033.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 83

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R+   LT +++        + I   ETGK  I + ++  LA  L+    +LL
Sbjct: 13 FGKRLKYLRQSKNLTYRKMALLCNVEYADIQRYETGKVNITLLSLGELAKALEVDPQELL 72


>gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612]
 gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612]
          Length = 118

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+  KL+Q ++    G  QS I+  E G+S  +++ ++  A   D  L  LL
Sbjct: 4  LGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQSAPSLETLVRYADYFDVSLDYLL 63


>gi|332653727|ref|ZP_08419471.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332516813|gb|EGJ46418.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 310

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R    LTQ+E+  R   ++  +S+ E+  S   ++ ++ L     T L  
Sbjct: 1  MSFGENLQFYRAREGLTQEELAERLEVSRQSVSKWESNTSFPEMEKLMTLCSLFQTDLDT 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|299136728|ref|ZP_07029911.1| transcriptional regulator, XRE family [Acidobacterium sp.
          MP5ACTX8]
 gi|298601243|gb|EFI57398.1| transcriptional regulator, XRE family [Acidobacterium sp.
          MP5ACTX8]
          Length = 258

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R++   +Q ++   TG +Q  IS +E+G+S  + + ++ LA TLD PL +
Sbjct: 19 LRYWRRQRGKSQLDLSLDTGVSQRHISFVESGRSVPSRELLLSLAKTLDVPLRE 72


>gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
 gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
          Length = 139

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+A ++Q+++  R G ++  +S+ E  +S  ++D  + LA      L  
Sbjct: 1  MILADKIIMLRKKAGMSQEQLAERLGVSRQSVSKWEGSQSMPDMDKAVKLADLFGLSLDS 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIR 63


>gi|302552146|ref|ZP_07304488.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302469764|gb|EFL32857.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 286

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|254512558|ref|ZP_05124624.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
 gi|221532557|gb|EEE35552.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11]
          Length = 468

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R +R++ K TQ E+    G + S+I+ LE  + ++++  ++ +A        
Sbjct: 3  KTLIGPRLRQLRRDQKQTQAEMARNLGVSPSYINLLENNQRSLSVQMLMSIAEAYAIDWR 62

Query: 79 KLLK 82
          +L K
Sbjct: 63 ELTK 66


>gi|159043770|ref|YP_001532564.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
 gi|157911530|gb|ABV92963.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 468

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 33/64 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R +R+E K TQ E+    G + ++++ LE  + ++++  ++ L  T +    
Sbjct: 3  KTLVGPRLRALRRERKQTQAEMAQALGVSPAYVNLLENNQRSLSVQMLMALTETYNVDWR 62

Query: 79 KLLK 82
           L+K
Sbjct: 63 DLVK 66


>gi|116252575|ref|YP_768413.1| helix-turn-helix transcriptional regulatory protein [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|115257223|emb|CAK08318.1| putative helix-turn-helix transcriptional regulatory protein
          [Rhizobium leguminosarum bv. viciae 3841]
          Length = 264

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R +  ++ R  R+  +++Q ++      +Q  +S +E+G+ST + D ++ LA  LD
Sbjct: 2  TPTARSL-GDHLREWRQRRRMSQLDLALEAEISQRHLSFIESGRSTPSRDMLLHLAERLD 60

Query: 75 TPLWK 79
           PL  
Sbjct: 61 VPLRD 65


>gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 122

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  RK+A LTQ+++ +  G  +  +S  E G   I+I  +  LA      L
Sbjct: 11 GQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYTL 65


>gi|313899270|ref|ZP_07832786.1| cupin domain protein [Clostridium sp. HGF2]
 gi|312955950|gb|EFR37602.1| cupin domain protein [Clostridium sp. HGF2]
          Length = 195

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  R E K+T K+I   T  +  ++S+LE G ++I  D +  +A  L   +
Sbjct: 10 GELIKQRRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 64


>gi|310828836|ref|YP_003961193.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612]
 gi|308740570|gb|ADO38230.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612]
          Length = 66

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 23 VNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N R    R    +TQK++    G  +  ++ +E G     I   + +   L   L +L
Sbjct: 2  GKNLRIKAARAALDMTQKDLAEAVGVTRQTMNAIEKGDYNPTIKLCVAICRVLGKTLDEL 61

Query: 81 L 81
           
Sbjct: 62 F 62


>gi|266619168|ref|ZP_06112103.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288869316|gb|EFD01615.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 113

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 33/62 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + RN R++    +++I  R   +  +++ +E+G+   ++D +I L + +     ++L
Sbjct: 8  FGASLRNAREKRNYRREQIAERAEISPRFLAAIESGRRKPSLDVLIRLVNAIGASFDEIL 67

Query: 82 KP 83
           P
Sbjct: 68 AP 69


>gi|290894051|ref|ZP_06557025.1| phage protein [Listeria monocytogenes FSL J2-071]
 gi|290556395|gb|EFD89935.1| phage protein [Listeria monocytogenes FSL J2-071]
          Length = 73

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+  R E  LTQK++ N+ G A+  I ++E G    +I+  + +   L+T +  + 
Sbjct: 8  FKLKRIENGLTQKQLANKVGLAEISIRKIENGVRNPSINTAVRICKILNTKIEVIF 63


>gi|229132613|ref|ZP_04261461.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196]
 gi|228650845|gb|EEL06832.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196]
          Length = 405

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 5  LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|256379796|ref|YP_003103456.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827]
 gi|255924099|gb|ACU39610.1| helix-turn-helix domain protein [Actinosynnema mirum DSM 43827]
          Length = 138

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R   + T +E+      +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REAIGDRLRHARTTQRRTLREVSRTARVSLGYLSEVERGRKEASSELLAAICDALELPLS 65

Query: 79 KLL 81
          +LL
Sbjct: 66 ELL 68


>gi|261368378|ref|ZP_05981261.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282569577|gb|EFB75112.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 90

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            RK   +TQKE+  R G AQ+ IS  E+G    ++  +  +A +L   L
Sbjct: 36 KCRKALGITQKELAERMGTAQANISRFESGNYNPSLAFLQKMAQSLGKTL 85


>gi|167913747|ref|ZP_02500838.1| putative transcriptional regulator, XRE family protein
          [Burkholderia pseudomallei 112]
          Length = 86

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+   L+Q+ + +     ++++S +E G+ + ++  +  +   L+      L
Sbjct: 9  VGEVLRSLRRRKGLSQEALAHAADMERNYVSLIELGRHSPSVRVIWKICAALEVTPSAFL 68


>gi|160934259|ref|ZP_02081646.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753]
 gi|156866932|gb|EDO60304.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753]
          Length = 162

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N   +R+  K +Q+E+  + G ++  +++ E+G++  ++ N   LA   +  +  L+
Sbjct: 13 RNLTVLRQIHKYSQEEVAEKIGVSRQAVAKWESGETAPDLINCDALAELYNVSVDDLI 70


>gi|73749022|ref|YP_308261.1| DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|289433017|ref|YP_003462890.1| XRE family transcriptional regulator [Dehalococcoides sp. GT]
 gi|73660738|emb|CAI83345.1| DNA-binding protein [Dehalococcoides sp. CBDB1]
 gi|288946737|gb|ADC74434.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    LTQ+E+ ++ G  +  +  +E GK + +++    +A   +TP+ ++ 
Sbjct: 3  NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFETPIEEIF 60


>gi|163939593|ref|YP_001644477.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163861790|gb|ABY42849.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 404

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|219668525|ref|YP_002458960.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219538785|gb|ACL20524.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    ++Q+++    G  +  I  +E GK   ++   I +   L   L  L 
Sbjct: 5  RLKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLF 61


>gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH
          domain protein [Pyrococcus sp. NA2]
 gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH
          domain protein [Pyrococcus sp. NA2]
          Length = 66

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+   LTQ+E+  + G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFGVKIEDIF 60


>gi|298244352|ref|ZP_06968158.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
 gi|297551833|gb|EFH85698.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM
           44963]
          Length = 442

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                ++ R    LTQ+++    GF QS+IS+LE G+   +I  +  +AH L  P
Sbjct: 79  VGQVLKHYRSIHHLTQRDLATILGFDQSYISKLENGQGLRDIAVLSRIAHCLAIP 133


>gi|289168327|ref|YP_003446596.1| hypothetical protein smi_1494 [Streptococcus mitis B6]
 gi|288907894|emb|CBJ22734.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 71

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 8  KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 64


>gi|163754491|ref|ZP_02161613.1| transcriptional regulator [Kordia algicida OT-1]
 gi|161325432|gb|EDP96759.1| transcriptional regulator [Kordia algicida OT-1]
          Length = 73

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R+E  + Q+++  +    +S +S LE G +   +  +  +A  L+  L +L+
Sbjct: 12 GKRVKMLREEKGMAQQDLAAKCNIEKSNLSRLEAGGTNPTLYTLKRIADNLEIKLEELV 70


>gi|126730415|ref|ZP_01746226.1| DNA-binding protein, putative [Sagittula stellata E-37]
 gi|126709148|gb|EBA08203.1| DNA-binding protein, putative [Sagittula stellata E-37]
          Length = 188

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R +R+   LT +++ ++ G +  W+S++E   S  +I ++  LA  LD  +  L 
Sbjct: 10 LGSDLRTLRRTRGLTLQQLADKLGRSVGWLSQVERDLSEPSITDLRHLAAALDVSVSMLA 69

Query: 82 K 82
          +
Sbjct: 70 R 70


>gi|296330427|ref|ZP_06872907.1| putative transcriptional repressor [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305675973|ref|YP_003867645.1| putative transcriptional repressor [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|2702242|gb|AAB91591.1| Orf2 [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296152430|gb|EFG93299.1| putative transcriptional repressor [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305414217|gb|ADM39336.1| putative transcriptional repressor [Bacillus subtilis subsp.
          spizizenii str. W23]
          Length = 139

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    R +R+  KLT  ++   +G + + IS++E GK  T     +  LA  L  P   L
Sbjct: 4  FGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|42522817|ref|NP_968197.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100]
 gi|39574013|emb|CAE79190.1| hypothetical protein Bd1294 [Bdellovibrio bacteriovorus HD100]
          Length = 103

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +K D     D I+ E + F    + IR   ++TQ E+  + G   + +S+LE G   
Sbjct: 1  MSTKKSDAIKFLDKIIGEPVSFGATLQAIRLSDEMTQAEMAKKLGITNAHLSQLERGHKF 60

Query: 61 INIDNMIILAHTLDTPL 77
          ++ +  +  A  L  P 
Sbjct: 61 VSPERALSFAKKLGYPP 77


>gi|147669788|ref|YP_001214606.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270736|gb|ABQ17728.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
          Length = 69

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    LTQ+E+ ++ G  +  +  +E GK + +++    +A    TP+ ++ 
Sbjct: 3  NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFKTPIEEIF 60


>gi|327472731|gb|EGF18158.1| transcriptional regulator [Streptococcus sanguinis SK408]
          Length = 71

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|323499242|ref|ZP_08104219.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323315630|gb|EGA68664.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 207

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +   +  ++IR +  LT +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGDRIKDIRGKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|227823870|ref|YP_002827843.1| putative transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
 gi|227342872|gb|ACP27090.1| putative transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
          Length = 125

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R +R+   ++QKE+    G + +++S LE GK    + D +  +A   + 
Sbjct: 4  FGEAMRELRRRKGVSQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNV 58


>gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
 gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291]
          Length = 243

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F +  +  RK   L+Q+ +      +QS I+ LE+G       N+  LA  LD   + L
Sbjct: 11 FKDRLKEARKNKNLSQENLAKLAEVSQSTIAALESG-RNKKATNIAKLAKILDVSAFWL 68


>gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile
          QCD-37x79]
          Length = 149

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R +  L Q E+      +QS I   E  + T   ++++ LA   +     L
Sbjct: 1  MFGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|157149688|ref|YP_001449888.1| transcription regulator [Streptococcus gordonii str. Challis
          substr. CH1]
 gi|157074482|gb|ABV09165.1| transcription regulator [Streptococcus gordonii str. Challis
          substr. CH1]
          Length = 71

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA TLDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALF 59


>gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429]
 gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429]
          Length = 206

 Score = 49.6 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +R +  LTQ+++ N     Q  IS  E+GK+T +++ +  LA   D 
Sbjct: 4  GEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDV 56


>gi|333004623|gb|EGK24147.1| helix-turn-helix family protein [Shigella flexneri VA-6]
          Length = 185

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|330809025|ref|YP_004353487.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327377133|gb|AEA68483.1| putative transcription factor, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 199

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   L   ++      +Q  +S++E  + + ++D +  L   L  PL KL 
Sbjct: 15 LGLQIKRQRQAQDLKLSDVAKIADISQGMLSKIENAQVSTSLDTLSRLCDVLGLPLSKLF 74


>gi|317494137|ref|ZP_07952553.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316917910|gb|EFV39253.1| hypothetical protein HMPREF0864_03322 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 265

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R +  +TQ+E+    G +Q  I  +ETGK    +     + + LD PL
Sbjct: 4  NNIKQLRTQLSITQRELAYMVGTSQQQIQRIETGKVAAKLGLAQTICNALDKPL 57


>gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112]
 gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112]
          Length = 234

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N    +RKE  LT +++ +  G   + IS  ETGK    ++    LA+  D  ++ L
Sbjct: 9  NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 65


>gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SS3/4]
          Length = 116

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 35/59 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IR+E  +TQK++  +   + S I+ LE+G++ +++  +I +A  L+T +  LL
Sbjct: 14 GQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIAEVLNTSISFLL 72


>gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075]
 gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075]
 gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463]
          Length = 66

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R  RK+ K++Q E+  R G A+  I+ +E  K   +++  + LAH L T L  L 
Sbjct: 2  NHVREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLF 59


>gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
          Length = 247

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N    +RKE  LT +++ +  G   + IS  ETGK    ++    LA+  D  ++ L
Sbjct: 22 NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYL 78


>gi|229822080|ref|YP_002883606.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229567993|gb|ACQ81844.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 488

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++ A     +      R+ R E +LT  ++   TG A S +S +E G+  + +  +  +A
Sbjct: 1  MAPAAETSPLTVGRRIRHFRTERRLTLDDLARLTGSAASQLSLVENGRREVRVSLLQQIA 60

Query: 71 HTLDTPLWKLLK 82
            LD     LL+
Sbjct: 61 RALDVSPADLLE 72


>gi|169627539|ref|YP_001701188.1| putative transcriptional regulator [Mycobacterium abscessus ATCC
          19977]
 gi|169239506|emb|CAM60534.1| Putative transcriptional regulator [Mycobacterium abscessus]
          Length = 85

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 1  MPRRK-RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP R  +++P    A  R R       R IR    +TQ+++  R+G  ++ + ++E G+ 
Sbjct: 1  MPTRPSQNDPERVVAWNRIRQTVGARIRQIRTSQDMTQEQLALRSGVTRNVLIDVEHGRR 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
           +  + +  +A  L+  +  LL
Sbjct: 61 GLLYERLFDIAAALEVTVGALL 82


>gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402]
 gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402]
          Length = 291

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +N R +RK+   +Q+++  R   ++  +S+ E+      ++++IIL+   +  +  
Sbjct: 1  MSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDD 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|167587597|ref|ZP_02379985.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ubonensis Bu]
          Length = 223

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+E+K T  EI      +  ++S++E   + I+I +++ +A  L+ PL  L+
Sbjct: 9  GQRIRRLRRESKKTLLEIATEAKLSVGFLSQVERNLTGISISSLVNVAKALNVPLGALI 67


>gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor
          saccharolyticus DSM 8903]
 gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 122

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              +  RK+A LTQ+++ +  G  ++ IS  E G   I+I  +  L++   
Sbjct: 11 GQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYG 62


>gi|187919154|ref|YP_001888185.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187717592|gb|ACD18815.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 190

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  R +R+  K T  +     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 15 GSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 67


>gi|75758644|ref|ZP_00738762.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|228904095|ref|ZP_04068190.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
 gi|228931022|ref|ZP_04093978.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|74493903|gb|EAO57001.1| Transcriptional regulator [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|228828643|gb|EEM74323.1| Transcriptional regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228855180|gb|EEM99744.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
          Length = 91

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNI---------RKEAKLTQKEIRNRTGFAQSWI 51
          M +  +D       ++ E+     NF+ +         R +  L+Q+E+   +G AQ  I
Sbjct: 1  MNKTDKDLREDIKKVVSEQGFV--NFQTLEIVGVLMAERVKRGLSQRELSKLSGVAQKTI 58

Query: 52 SELETGKSTINIDNMIILAHTLDTPL 77
          S +E+G+   +I+ ++ LA  L   L
Sbjct: 59 SHIESGEDIPSIETVVKLAKHLGYEL 84


>gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA]
 gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA]
 gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 254

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N +++R    L+Q ++    G ++  +++ E  KS   +D +I L    +  L  
Sbjct: 1  MSFRDNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 261

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N +++R    L+Q ++    G ++  +++ E  KS   +D +I L    +  L  
Sbjct: 1  MSFRDNLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|229011075|ref|ZP_04168269.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048]
 gi|228750247|gb|EEM00079.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048]
          Length = 405

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 5  LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|227485487|ref|ZP_03915803.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236486|gb|EEI86501.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 70

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN  + RK+A   Q E+    G ++  IS +E G    ++   + +A  L   + ++ +
Sbjct: 5  NNLADFRKKAGYNQAELGGLVGVSRQTISLIERGDYNPSVTVALTIAKVLGVDINEIFR 63


>gi|226360021|ref|YP_002777799.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226238506|dbj|BAH48854.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 196

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R     +   +  R   + S +S +ETG   I +D ++ +A  L T L +L++
Sbjct: 13 QRIRGLRVARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVE 71


>gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile
          QCD-63q42]
          Length = 149

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R +  L Q E+      +QS I   E  + T   ++++ LA   +     L
Sbjct: 1  MFGERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|197286055|ref|YP_002151927.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|194683542|emb|CAR44394.1| fimbrial operon regulator [Proteus mirabilis HI4320]
          Length = 97

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +       +        R+   LT  E+  + G +Q   S  E G + +++D +   A  
Sbjct: 2  NRSYPASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACF 61

Query: 73 LDTPLWKLLK 82
              L  L +
Sbjct: 62 FGISLSDLFQ 71


>gi|163735152|ref|ZP_02142588.1| transcriptional regulator [Roseobacter litoralis Och 149]
 gi|161391610|gb|EDQ15943.1| transcriptional regulator [Roseobacter litoralis Och 149]
          Length = 111

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 27/67 (40%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R +        R     +Q E+    G +Q+ +SE+E G  ++ ++ +   +  L 
Sbjct: 2  SKSNRELINEALTLARLYWGYSQVEMAEALGMSQAMVSEIERGSKSVTLETLERYSEALG 61

Query: 75 TPLWKLL 81
              +L+
Sbjct: 62 VKKSQLM 68


>gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea
          34H]
 gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea
          34H]
          Length = 180

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTEFF 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|70729495|ref|YP_259233.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens
          Pf-5]
 gi|68343794|gb|AAY91400.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
          Pf-5]
          Length = 242

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          F +  +  R+ A+L Q E+  R G  Q+ IS+LE GKS   
Sbjct: 3  FKDRLKTARRHAQLNQTELAERAGLTQTSISDLERGKSKAT 43


>gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145]
 gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145]
          Length = 174

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +RK+   +       TG +++ + ++E  +S+  +  +  LA   +  L  
Sbjct: 6  HTVARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQESSPTLATLWKLATGFNVSLSW 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|323525513|ref|YP_004227666.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323382515|gb|ADX54606.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001]
          Length = 84

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   L+Q+ + +     ++++S +E G+ + ++  +  +   LD      L
Sbjct: 7  VGEVLRALRRRKGLSQEALAHAAQMERNYVSLIELGRHSPSVRVIWKICAALDVTPSAFL 66


>gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602]
 gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602]
          Length = 188

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R E   +  +    TG +++ + ++E G+S+  +  +  +A  L+    + L+
Sbjct: 9  GSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSEFLE 68


>gi|325680471|ref|ZP_08160020.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8]
 gi|324107840|gb|EGC02107.1| nucleotide sugar dehydrogenase [Ruminococcus albus 8]
          Length = 501

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +        RK  K+TQ ++  +TG  +  +S LE+   T +I+ +  L   L      
Sbjct: 7  QLLAETVEGRRKSLKITQAQLAEKTGINRGLLSRLESQDFTPSIEQLQALGEALGFEPTD 66

Query: 80 LL 81
          + 
Sbjct: 67 MF 68


>gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 238

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 49  MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 108

Query: 80  LLK 82
             +
Sbjct: 109 FFR 111


>gi|253991748|ref|YP_003043104.1| hypothetical protein PAU_04276 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638523|emb|CAR67144.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783198|emb|CAQ86363.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 203

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           E  + +   R  R E  +TQK +       QS+I+++E G+  +++   + +AH L    
Sbjct: 121 EYQLVIKALRKARIEKGITQKSLAQALDRPQSFIAKIENGERRLDVVEFVHIAHLLSVDH 180


>gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7
          str. EC4024]
          Length = 175

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+    +  ++   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 TP 68


>gi|169631162|ref|YP_001704811.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
 gi|169243129|emb|CAM64157.1| Possible transcriptional regulator [Mycobacterium abscessus]
          Length = 139

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R+ A+++ +++  + G +  ++S++E G    + + +  +A  L      L
Sbjct: 22 IRAQREAAQVSVRQLAEKAGVSNPYLSQIERGLRRPSAEVLNQIAKALRVSAEVL 76


>gi|209547110|ref|YP_002279028.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209538354|gb|ACI58288.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 207

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D + R       N +  R+++  +  E+  R+G ++  + E+E G +  +I  +   A  
Sbjct: 13 DDVERVSATVSQNLKIFRRDSGFSLDELSRRSGVSKGMLVEIEKGTANPSIATLCRAATA 72

Query: 73 LDTPLWKLL 81
          L   +   +
Sbjct: 73 LGVSVADFV 81


>gi|167737542|ref|ZP_02410316.1| DNA-binding protein [Burkholderia pseudomallei 14]
          Length = 187

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|193067087|ref|ZP_03048056.1| transcriptional regulator PuuR [Escherichia coli E110019]
 gi|192959677|gb|EDV90111.1| transcriptional regulator PuuR [Escherichia coli E110019]
          Length = 185

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|114567544|ref|YP_754698.1| hypothetical protein Swol_2033 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
 gi|114338479|gb|ABI69327.1| conserved hypothetical protein [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 64

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RK     Q+++    G  +  I+ +E  K    ++  + LA  L T + +L 
Sbjct: 3  NNIKELRKALGYRQEDLAACLGVTRQTINAIENQKYNPTLELAMKLAKLLGTNVEELF 60


>gi|300173314|ref|YP_003772480.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811]
 gi|299887693|emb|CBL91661.1| transcriptional activator [Leuconostoc gasicomitatum LMG 18811]
          Length = 280

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  RK   ++QKE+    G +QS IS +E G ++     +  +   L+ P+    
Sbjct: 9  IRKTRKSRGISQKELGQLIG-SQSMISRIENGLTSPTDRALQQICDILNVPIVDYF 63


>gi|290889566|ref|ZP_06552656.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429]
 gi|290480764|gb|EFD89398.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429]
          Length = 198

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F     + R+E  +TQ ++      ++  +S  E GK+  ++D ++ L+   D  L  
Sbjct: 7  MVFSEIISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 66

Query: 80 LLK 82
          L+K
Sbjct: 67 LIK 69


>gi|307727984|ref|YP_003911197.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1003]
 gi|307588509|gb|ADN61906.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 98

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  RK + + Q+ +      +++++S+LE G+ +  +D +  +A  +     
Sbjct: 4  RTGLGRALRAARKTSGVPQEGLDVT---SRTYLSQLERGRQSPTLDKLEAIAGGMGVHPL 60

Query: 79 KLL 81
           LL
Sbjct: 61 SLL 63


>gi|284045281|ref|YP_003395621.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949502|gb|ADB52246.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 201

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
            +E   S A            R +R E  LT  E+    G A S +S LETG   + + 
Sbjct: 14 PANEHTSSQADDDVEERVRGRLRQLRDERGLTLAEVAFAAGMATSTLSRLETGARRLTLA 73

Query: 65 NMIILAHTLDTPLWKLL 81
          ++  LA  L     +L+
Sbjct: 74 HLPALARALGIATDELV 90


>gi|253565785|ref|ZP_04843240.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946064|gb|EES86471.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 100

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK+AK+TQ E+  R G  +S+IS +E+G++ +    +  + + L 
Sbjct: 40 GKIIEDARKKAKVTQAELARRIGSNRSYISRVESGQTDLRTSTLYRIMNALG 91


>gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074]
          Length = 211

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE   T   +   TG + S +S LE+G    +++ ++ +A   D PL +L+
Sbjct: 27 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 86


>gi|229015370|ref|ZP_04172387.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048]
 gi|228745926|gb|EEL95912.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048]
          Length = 240

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +++R    +TQ+++ ++   ++  IS+ E GKS  ++ N++ L++  +  +  LLK
Sbjct: 23 GKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDSLLK 82


>gi|223983720|ref|ZP_03633892.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM
          12042]
 gi|223964312|gb|EEF68652.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM
          12042]
          Length = 119

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 25/64 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  RK   +++ ++ ++   A  +I+ +E      ++     L   LD  + +
Sbjct: 11 KAFGQAIKAARKAKGISRNQLADKMNIAPRYIASIENSGQHPSLQIFYELVTLLDVSVDQ 70

Query: 80 LLKP 83
             P
Sbjct: 71 FFFP 74


>gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 198

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 19 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 78


>gi|209809535|ref|YP_002265073.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238]
 gi|208011097|emb|CAQ81517.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238]
          Length = 215

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IR +  LT +E   RTG A+S +S++E  + +     +  LA  LD  + ++ 
Sbjct: 36 LGKRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLASGLDIDIPQIF 95

Query: 82 KP 83
          +P
Sbjct: 96 EP 97


>gi|192290671|ref|YP_001991276.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192284420|gb|ACF00801.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          TIE-1]
          Length = 89

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N R +R     TQ ++       Q  IS +E  +S   +  +  +A  L + + +
Sbjct: 4  KLLATNVRRLRLARGWTQDQLAAALEVEQGIISLIENKRSNPTLLMLEAIAEALGSDVAE 63

Query: 80 LLK 82
          L K
Sbjct: 64 LFK 66


>gi|169334539|ref|ZP_02861732.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259256|gb|EDS73222.1| hypothetical protein ANASTE_00942 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 104

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               +  RK+  +TQ+++      + S +S +E G    ++  ++ +A+ L+  
Sbjct: 8  LGKRLKEERKKQGVTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNIANVLNVS 62


>gi|167917945|ref|ZP_02505036.1| DNA-binding protein [Burkholderia pseudomallei BCC215]
          Length = 187

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|163737060|ref|ZP_02144478.1| transcriptional regulator, XRE family with cupin sensor domain
          [Phaeobacter gallaeciensis BS107]
 gi|161389664|gb|EDQ14015.1| transcriptional regulator, XRE family with cupin sensor domain
          [Phaeobacter gallaeciensis BS107]
          Length = 205

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP +    P  +        +     R  RK+  LT + + +  G +  ++S++E   +T
Sbjct: 1  MP-QTSATPKPAKTRSSPGPMLGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNAT 59

Query: 61 INIDNMIILAHTLDTPL 77
            +  +  +A  L+  L
Sbjct: 60 PTLGTLAQIASALEVGL 76


>gi|94986482|ref|YP_594415.1| transcriptional regulator [Lawsonia intracellularis PHE/MN1-00]
 gi|94730731|emb|CAJ54093.1| predicted transcriptional regulators [Lawsonia intracellularis
          PHE/MN1-00]
          Length = 80

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R +R++  L+Q+ +       +++I  LE G S   +  +I LA+ L     +
Sbjct: 9  FGVMLRTLRQQRGLSQQTLAEFADVERNYIYYLEKGLSDPTLGVLIGLANGLGLNFSE 66


>gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
          Length = 199

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79


>gi|60683798|ref|YP_209648.1| hypothetical protein pDx14.2p11 [Bacillus mycoides]
 gi|60416575|emb|CAI40627.1| hypothetical protein [Bacillus mycoides]
          Length = 240

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +++R    +TQ+++ ++   ++  IS+ E GKS  ++ N++ L++  +  +  LLK
Sbjct: 23 GKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDSLLK 82


>gi|238794119|ref|ZP_04637735.1| hypothetical protein yinte0001_32260 [Yersinia intermedia ATCC
          29909]
 gi|238726517|gb|EEQ18055.1| hypothetical protein yinte0001_32260 [Yersinia intermedia ATCC
          29909]
          Length = 75

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E    + + R+ R    +TQ+ + +  G  QS+I+++E G+  +++   + +A  L   +
Sbjct: 8  EYQSVIKSLRDQRIAKGITQESLASALGRPQSFIAKVENGERRLDVVEFVHIAKLLGVKV 67

Query: 78 WKLL 81
            +L
Sbjct: 68 EDVL 71


>gi|303231732|ref|ZP_07318455.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
 gi|302513681|gb|EFL55700.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-049-V-Sch6]
          Length = 89

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWKLL 81
           ++Q+++ +  G ++S++S+LE G   S ++I+ +  +A+ L+    +LL
Sbjct: 2  GISQRQLADVVGISRSYLSKLECGYGISGVSIEVVFKIAYCLNVSTSQLL 51


>gi|229060102|ref|ZP_04197472.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603]
 gi|228719142|gb|EEL70752.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603]
          Length = 66

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N     R E   TQ+++  R G ++  I+ +E  K   ++     +A     PL ++
Sbjct: 1  MLNNRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAKAFGKPLEEV 60

Query: 81 LK 82
           +
Sbjct: 61 FE 62


>gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum
          ATCC 6940]
 gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum
          ATCC 6940]
          Length = 468

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 59


>gi|283795792|ref|ZP_06344945.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
 gi|291076424|gb|EFE13788.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
          Length = 66

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M  VNN + IR++  + Q E+   TG+    I  +E G+ST + + M+ ++   +  +  
Sbjct: 1  MAVVNNIKEIREQRGIYQDELAEATGYCTKTIGRIERGESTPSAEFMLRISKYFNMMVED 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|149920828|ref|ZP_01909291.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149818346|gb|EDM77798.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 120

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + R +R+   LTQ+ +  R   +   I  LE G  + ++  ++ L   L+  L  L+
Sbjct: 16 FGRHVRGLRRARGLTQEGLAERADLSADTIRRLENGGFSPSLVTLVKLTRGLELRLSTLI 75


>gi|149203644|ref|ZP_01880613.1| transcriptional regulator, XRE family with cupin sensor
          [Roseovarius sp. TM1035]
 gi|149142761|gb|EDM30803.1| transcriptional regulator, XRE family with cupin sensor
          [Roseovarius sp. TM1035]
          Length = 211

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +R+    T +    RTG A S I ++E G+ + + +N+I +A   D  + 
Sbjct: 24 RADLGARMKAVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDIGME 83

Query: 79 KLL 81
          +L 
Sbjct: 84 RLF 86


>gi|307324371|ref|ZP_07603579.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306890102|gb|EFN21080.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 203

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     +  ++  R   + S +S +ETG   I++D +  +A  L T L +L
Sbjct: 11 LVRKRIRGLRSALGWSLDDLAARCYLSPSTLSRIETGHRRISLDQLSAIARALGTTLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|300774128|ref|ZP_07083997.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300760299|gb|EFK57126.1| helix-turn-helix domain protein [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 195

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N    R +  LTQ+++    G     I  +E G+       +  +A  LD  + +L
Sbjct: 9  NLSQKRSDKGLTQQKLAEIAGLTTRTIQRIEKGEVIPQGYTLQRIAEALDISIEEL 64


>gi|239930441|ref|ZP_04687394.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438799|ref|ZP_06578189.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341694|gb|EFE68650.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 191

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 492

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 26 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 82


>gi|124514630|gb|EAY56142.1| putative transcriptional regulator, XRE family [Leptospirillum
          rubarum]
          Length = 164

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R++  LTQ ++ N  G  QS +S LE +G+  +++  ++ LA  LDT L    
Sbjct: 31 AYQIRELREQRGLTQTDLANLLGKRQSVVSRLESSGEKGLSLKTLLELASALDTALVLKF 90

Query: 82 KP 83
           P
Sbjct: 91 VP 92


>gi|160897879|ref|YP_001563461.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363463|gb|ABX35076.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 306

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R  F ++ R+ R+  +L+Q+ +      +   +S +ETG++  + + ++ L   L  
Sbjct: 38  PSARSPFGDHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRLVERLGV 97

Query: 76  PLWK 79
           PL +
Sbjct: 98  PLRE 101


>gi|58039234|ref|YP_191198.1| transcriptional regulator [Gluconobacter oxydans 621H]
 gi|58001648|gb|AAW60542.1| Transcriptional regulator [Gluconobacter oxydans 621H]
          Length = 212

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R R E   S A     +   N  R  R    L+Q+++    G     I + E G + +
Sbjct: 20 PDRARPESRSSAAAGPVDVHVGNRIRLRRTLMGLSQEKLGEALGLTFQQIQKYERGANRV 79

Query: 62 NIDNMIILAHTLDTPL 77
              +  LA  LD P+
Sbjct: 80 GASRLYDLAQVLDVPI 95


>gi|21232573|ref|NP_638490.1| hypothetical protein XCC3143 [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66767353|ref|YP_242115.1| hypothetical protein XC_1021 [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|21114370|gb|AAM42414.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66572685|gb|AAY48095.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. 8004]
          Length = 97

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R    ++Q+E+    G  +S + ++E G+    +  ++ ++  L+     L+
Sbjct: 25 FGKAVRAARTARDISQEELATLAGIERSHMGKIERGQHMPTLALILRVSIALNDSAANLM 84

Query: 82 K 82
           
Sbjct: 85 T 85


>gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum
          reducens MI-1]
          Length = 218

 Score = 49.6 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R +  L+  E+  R+G  QS +S +E+G+     D +  +   L   + +  
Sbjct: 4  GARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAEFF 62


>gi|325291275|ref|YP_004267456.1| transcriptional regulator, XRE family [Syntrophobotulus
          glycolicus DSM 8271]
 gi|324966676|gb|ADY57455.1| transcriptional regulator, XRE family [Syntrophobotulus
          glycolicus DSM 8271]
          Length = 66

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  + Q+++    G  +  I  +E+G     ++  I +   L   L  L 
Sbjct: 4  KRMKIARMECDMKQEDLAKAVGVTRQTIGMIESGNYNPTLNLCIAICKALGKTLDGLF 61


>gi|323651063|ref|YP_004243490.1| immunity repressor protein [Bacillus subtilis subsp. natto]
 gi|323461486|dbj|BAJ76903.1| immunity repressor protein [Bacillus subtilis subsp. natto]
          Length = 161

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          RE+          RK+  L+Q ++ N TG + ++IS LE G+        +  LA  L  
Sbjct: 4  REQFDLSKYLLEKRKQKGLSQTQVANDTGLSSAYISMLEKGERKRPTQAVIKKLATALSI 63

Query: 76 PLWKLLK 82
          P  ++L+
Sbjct: 64 PNIEMLQ 70


>gi|296124304|ref|YP_003632082.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
 gi|296016644|gb|ADG69883.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
          Length = 380

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  N  R  R  A LTQ+++  ++G +++ ++ +E  K   ++   + L+ TL   +  L
Sbjct: 27 ISANQVRKFRLLAGLTQQQLAEQSGISRTAVTAIEGAKLVPSVAAALALSRTLGASVEDL 86

Query: 81 L 81
           
Sbjct: 87 F 87


>gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 420

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N +  R+   L+Q+E+  + G + S + + E G+  +    +  +A  L      L 
Sbjct: 6  GDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 64


>gi|197286053|ref|YP_002151925.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|227356567|ref|ZP_03840954.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
 gi|194683540|emb|CAR44391.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|227163323|gb|EEI48250.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
          Length = 117

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  +T  E+    G +Q   S  E G+  I++D + +L++     L
Sbjct: 24 KIVGARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYLLSYIFKVKL 81


>gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1]
 gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1]
 gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
          Length = 204

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+E+ ++ G ++  +S+ E+ +ST +++ +II++         +LK
Sbjct: 4  ADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILK 63


>gi|159905131|ref|YP_001548793.1| XRE family transcriptional regulator [Methanococcus maripaludis
          C6]
 gi|159886624|gb|ABX01561.1| transcriptional regulator, XRE family [Methanococcus maripaludis
          C6]
          Length = 209

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IR E  L+   +   TG ++  + ++E  +    I  ++ +A+ L      
Sbjct: 31 HVISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTISTILKIANGLKISFTS 90

Query: 80 LL 81
          LL
Sbjct: 91 LL 92


>gi|117619340|ref|YP_857051.1| Cro/CI family transcriptional regulator [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|117560747|gb|ABK37695.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
          Length = 200

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R++ +L+  E+  R G ++  + E+E G +  +I  +  LA  L   +  ++
Sbjct: 22 VSRRLKEYRQQGRLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKLAAALGVSVADIV 81


>gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM
          1313]
          Length = 374

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R+E  LTQ++I N  G +++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 7  ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 65


>gi|323343728|ref|ZP_08083955.1| XRE family transcriptional regulator [Prevotella oralis ATCC
          33269]
 gi|323095547|gb|EFZ38121.1| XRE family transcriptional regulator [Prevotella oralis ATCC
          33269]
          Length = 101

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    +  RK   +TQK++    G  + +IS LE GK  + +     +A  L 
Sbjct: 43 YSELLKEERKRQNITQKQLAEMVGKKREYISSLENGKVDMQLSTFFRIAGALG 95


>gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis
          Re117]
          Length = 65

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          NN    RKE   +Q+ + +  G ++  I  LE G+   ++     L+      +  L  P
Sbjct: 3  NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYDPSLPLAFKLSAVFGCKIEDLFIP 62


>gi|319760977|ref|YP_004124914.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
 gi|317115538|gb|ADU98026.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
          Length = 97

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + +  G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRTERGIAQESLAHLAGIERSHMGKVERGEHMPTLAIIFKIAGALECSTAVLM 84


>gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 175

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+    +  ++   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 TP 68


>gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319]
 gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319]
          Length = 66

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +RK  K++Q E+    G ++  I+ +E  K   ++     LA  L   + +L
Sbjct: 1  MVENRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAEELGATVDEL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79


>gi|282880753|ref|ZP_06289450.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305374|gb|EFA97437.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella
           timonensis CRIS 5C-B1]
          Length = 112

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 5   KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           +RDE                  +  R E  LTQ+E+  R G  ++ IS LE G S I+I 
Sbjct: 27  ERDEHERKVETALHAYRIGEAIKKARVEQNLTQEELGERIGVKRAQISRLEKGYS-ISIP 85

Query: 65  NMIILAHTLDTPLWKL 80
            M  +   L      L
Sbjct: 86  TMSKVFKALGVSTASL 101


>gi|256544375|ref|ZP_05471750.1| Xre family toxin-antitoxin system, antitoxin component
          [Anaerococcus vaginalis ATCC 51170]
 gi|256399907|gb|EEU13509.1| Xre family toxin-antitoxin system, antitoxin component
          [Anaerococcus vaginalis ATCC 51170]
          Length = 301

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 10 HLSDAILRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          HL + + ++++I      + +RK   ++Q ++    G  +  IS +E G +  +   +  
Sbjct: 3  HLEEILEKDKLILLAKKIKEVRKNRNISQLDLSVEAGIDRKTISRIENGVNEPSFSTLYK 62

Query: 69 LAHTLD 74
          +++ L+
Sbjct: 63 ISYILN 68


>gi|255014654|ref|ZP_05286780.1| hypothetical protein B2_12149 [Bacteroides sp. 2_1_7]
          Length = 103

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 13  DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
                ER  F              + RK+ K+TQ E+  + G  +++IS +E G     +
Sbjct: 23  KVGSPEREEFRKEAYSYCVGQIISDARKQEKMTQSELAEKVGTNKTYISRIEKGIIEPGV 82

Query: 64  DNMIILAHTLDTPLWKLLKP 83
                +   L   + +++KP
Sbjct: 83  GLFFRIIDALGLKI-EIVKP 101


>gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96]
 gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96]
 gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851
          [Erwinia pyrifoliae DSM 12163]
          Length = 133

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 18 ERMIF---VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ER  F         +RKE  +TQ E+ ++   +Q  +   E G+  I + ++  +A    
Sbjct: 19 ERDFFIALGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRRRIKVSSLPFVAQIFS 78

Query: 75 TPLWKLL 81
           PL +L 
Sbjct: 79 VPLEELF 85


>gi|254500071|ref|ZP_05112223.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222441369|gb|EEE48047.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 103

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDN 65
          +     D     R+      +  R+EA L+Q+E+  + G    ++IS++E+GK  +  D 
Sbjct: 6  NAKTTDDKRQELRLQAGAWLKAAREEAGLSQRELAGKMGALYYTFISQIESGKGRLPADR 65

Query: 66 MIILAHTLDT 75
            + A  L  
Sbjct: 66 YAVYAEALGV 75


>gi|116490172|ref|YP_809716.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1]
 gi|116090897|gb|ABJ56051.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1]
          Length = 192

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F     + R+E  +TQ ++      ++  +S  E GK+  ++D ++ L+   D  L  
Sbjct: 1  MVFSEIISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDV 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|114769621|ref|ZP_01447231.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255]
 gi|114549326|gb|EAU52208.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255]
          Length = 190

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + R +RK   +T  E+  + G +  W+S++E   S+  I+ +  LA     PL
Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPL 67


>gi|116695951|ref|YP_841527.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113530450|emb|CAJ96797.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 196

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M + ++  P  +D      +      R+ R  A  T  ++  + G ++S IS++E G +T
Sbjct: 1  MAKTEQPTPEAAD-SKSATLTLGVKLRHARLVAGYTLLQLAGKAGCSESLISKIERGLAT 59

Query: 61 INIDNMIILAHTLDT 75
           +   +  LA  LDT
Sbjct: 60 PSFTTLHRLAVALDT 74


>gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf.
          saccharolyticum K10]
          Length = 171

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +N+RK   L+Q+E+  +    +  +S+ E G S  + + +I LA  LDT +  L
Sbjct: 1  MLNENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSVPDSNMLISLADELDTSVSIL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus
           ATCC 27064]
          Length = 457

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N +  R+   L+Q+E+  + G + S + + E G+  +    +  +A  L      L 
Sbjct: 43  GDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSALF 101


>gi|261493122|ref|ZP_05989658.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2
          str. BOVINE]
 gi|261496455|ref|ZP_05992838.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261307888|gb|EEY09208.1| hypothetical protein COI_2176 [Mannheimia haemolytica serotype A2
          str. OVINE]
 gi|261311210|gb|EEY12377.1| hypothetical protein COK_1536 [Mannheimia haemolytica serotype A2
          str. BOVINE]
          Length = 64

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  R  R+   L+Q+E+ +  G     I   E G    N+  +  LA  L+     L
Sbjct: 2  NKIRQFRRAIGLSQQELASVIGVTTGAIGFYERGLREPNLATIKKLAEALNCKPADL 58


>gi|323342462|ref|ZP_08082694.1| cro/CI family transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463574|gb|EFY08768.1| cro/CI family transcriptional regulator [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 177

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  LT +E+ +R+   + ++S+LE   ++ +I  +  +   L T L    K
Sbjct: 4  GKRLKQLRTKNGLTLEELASRSELTKGFLSQLENDLTSPSIATLNDIVEALGTNLSVFFK 63


>gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141]
 gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141]
          Length = 492

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 26 KTYVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 82


>gi|229166643|ref|ZP_04294395.1| Transcriptional regulator, Xre [Bacillus cereus AH621]
 gi|228616897|gb|EEK73970.1| Transcriptional regulator, Xre [Bacillus cereus AH621]
          Length = 404

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A+ L      LL
Sbjct: 4  LGEKIKTLRKEKKLTQTELAG-SELTKSMLSQIENGKATPSMKALQYIANKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|212710302|ref|ZP_03318430.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens
          DSM 30120]
 gi|212687109|gb|EEB46637.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens
          DSM 30120]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+   L+  E+ + +G +++ +S+LE+G S   ID +  +A  L  PL  L  
Sbjct: 10 GQKVRLLRQARNLSLSELSHLSGISKAALSKLESGDSNPRIDTLESIAAALRFPLSDLFT 69


>gi|71803685|ref|YP_132230.2| hypotethical transcriptional regulator [Photobacterium profundum
          SS9]
          Length = 101

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 33/56 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + IR+   + Q E+  +   ++S++SE+E+GK  +N++ +   ++  D P+  L+
Sbjct: 6  LKIIRQFHNVKQVELAQKLNLSKSYLSEIESGKKPVNLELLDKYSNLFDIPVSSLV 61


>gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
               R IR+ A L+Q+ +  R+G   S IS +E GK   ++  +  +
Sbjct: 11 LGQRLRVIRERAGLSQRALAKRSGIPNSTISLIEGGKINPSVSTLRRV 58


>gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae B728a]
 gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 20 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 79


>gi|50119905|ref|YP_049072.1| putative regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49610431|emb|CAG73876.1| putative regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 84

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R E  +TQ+ + N  G  QS+++++E G+  +++   + +AH L      +L+
Sbjct: 16 LREARIEKGMTQENLANALGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDASTVLE 72


>gi|76809409|ref|YP_332574.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|167823130|ref|ZP_02454601.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|167909924|ref|ZP_02497015.1| DNA-binding protein [Burkholderia pseudomallei 112]
 gi|226194494|ref|ZP_03790092.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|254190850|ref|ZP_04897357.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254260931|ref|ZP_04951985.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1710a]
 gi|76578862|gb|ABA48337.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|157938525|gb|EDO94195.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|225933579|gb|EEH29568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|254219620|gb|EET09004.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1710a]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|309798569|ref|ZP_07692844.1| conserved domain protein [Streptococcus infantis SK1302]
 gi|322387445|ref|ZP_08061055.1| transcriptional regulator [Streptococcus infantis ATCC 700779]
 gi|308117805|gb|EFO55206.1| conserved domain protein [Streptococcus infantis SK1302]
 gi|321141974|gb|EFX37469.1| transcriptional regulator [Streptococcus infantis ATCC 700779]
          Length = 69

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDMTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|326316490|ref|YP_004234162.1| helix-turn-helix domain-containing protein [Acidovorax avenae
          subsp. avenae ATCC 19860]
 gi|323373326|gb|ADX45595.1| helix-turn-helix domain protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R  R+   L+  E+  R   A+S +S+LE G    +++ +  LA  L   + +L
Sbjct: 12 LLASAVRRERERLGLSVSELAKRARIAKSTLSQLEAGSGNPSLETLWALATALGVQVTRL 71

Query: 81 L 81
          +
Sbjct: 72 I 72


>gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 156

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R     TQK +  + G +   IS  E   ++ N +++I LA   +  +  +L
Sbjct: 7  NKIKELRIAKGWTQKSLAEKLGVSSQVISNWERAYTSPNQEDLIKLAKVFNVTIDYIL 64


>gi|255281619|ref|ZP_05346174.1| conserved domain protein [Bryantella formatexigens DSM 14469]
 gi|255267686|gb|EET60891.1| conserved domain protein [Bryantella formatexigens DSM 14469]
          Length = 123

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    +N R +   TQ+E+  + G + +++ +LE  K T ++         L+    
Sbjct: 5  KTLFATMVKNARMDRHWTQEELAEKLGISLTYLGDLERHKGTPSLPLFCKAMRLLNLSAD 64

Query: 79 KLLKP 83
            + P
Sbjct: 65 DYVYP 69


>gi|209517719|ref|ZP_03266556.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209501894|gb|EEA01913.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 291

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  R  R    ++Q ++    G +Q  IS +E+G+S    D ++ LA TLD PL +
Sbjct: 15 LGSLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLLTLAQTLDVPLRE 72


>gi|197104892|ref|YP_002130269.1| hypothetical protein PHZ_c1427 [Phenylobacterium zucineum HLK1]
 gi|196478312|gb|ACG77840.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 416

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            I     R  R     + +EI  R G  + +I +LETG  + + D +  LA  L      
Sbjct: 51  KIAGEQLRLARLARGYSLEEIGERVGATRQFIHQLETGARSASDDLIAALADELGVTAAF 110

Query: 80  LLKP 83
           L +P
Sbjct: 111 LGEP 114


>gi|167835768|ref|ZP_02462651.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
               SD      +      ++IRK   L+Q+E+  R G   S IS +E    + +I ++
Sbjct: 4  ASRPESDPQEAPALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSL 63

Query: 67 IILAHTLDTPLWKLL 81
            +   +   + +  
Sbjct: 64 RKVLSGIPMSMVEFF 78


>gi|307946156|ref|ZP_07661491.1| putative toxin-antitoxin system, antitoxin component, Xre family
          [Roseibium sp. TrichSKD4]
 gi|307769820|gb|EFO29046.1| putative toxin-antitoxin system, antitoxin component, Xre family
          [Roseibium sp. TrichSKD4]
          Length = 258

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+E  ++Q  + +R    Q  +S LETG++  +   +  ++  L  P+ K L
Sbjct: 11 FGQALRALRRELNISQSALADRLSSTQRHLSFLETGRAQPSTQMVDRISRVLGLPISKRL 70


>gi|295100170|emb|CBK89259.1| Predicted transcriptional regulators [Eubacterium cylindroides
          T2-87]
          Length = 117

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK A L+Q+ + +  G  +  IS  E  ++  N + + +L+   +     L
Sbjct: 1  MLGENILRLRKGANLSQEALGDIIGVTRQMISNWELEETAPNPEQLKLLSKAFNVSADDL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|294790981|ref|ZP_06756139.1| putative Helix-turn-helix domain protein [Scardovia inopinata
           F0304]
 gi|294458878|gb|EFG27231.1| putative Helix-turn-helix domain protein [Scardovia inopinata
           F0304]
          Length = 169

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           P +K  +    D+ +  R +     R++R +   T +EI  + G +  ++SE+E G+   
Sbjct: 61  PNQKASKNRSGDSDVSLRKVQGGILRSLRTKDHKTLREISEKAGVSLGYLSEVERGQKEA 120

Query: 62  NIDNMIILAHTLDTPLWKLL 81
           + D +  +   L   L  +L
Sbjct: 121 SSDLLTSITEALGVRLSDML 140


>gi|229160744|ref|ZP_04288736.1| Transcriptional regulator, Xre [Bacillus cereus R309803]
 gi|228622759|gb|EEK79593.1| Transcriptional regulator, Xre [Bacillus cereus R309803]
          Length = 405

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+  +  LL
Sbjct: 5  LGEKIKALRKEKKLTQTELSG-SELTKSMLSQIENGKATPSMKTLQYIADKLECEMSFLL 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|291287416|ref|YP_003504232.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
 gi|290884576|gb|ADD68276.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus
          DSM 12809]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    + +R +  +T +++   +G + S++S+LE    +  + ++  +A  L  
Sbjct: 3  FGKTVKELRLKHNMTLRDLAKTSGCSISFLSQLERDLISPTVASLRKIADALGV 56


>gi|225571103|ref|ZP_03780120.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM
          15053]
 gi|225160184|gb|EEG72803.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM
          15053]
          Length = 63

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RK   L Q+++  R+G ++  I  +E  K    ++  + LA  LDT + +L 
Sbjct: 3  NNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYNPTLELAMKLARLLDTTVEELF 60


>gi|197104922|ref|YP_002130299.1| hypothetical protein PHZ_c1457 [Phenylobacterium zucineum HLK1]
 gi|196478342|gb|ACG77870.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 111

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  ++  P  S    + R +        R+ A L+Q+++    G A S +S +E G+  
Sbjct: 7  MPFARQPNPVFSAEYQQVREV----LVAARRAAGLSQRDLAAALGKAGSHVSMIERGQRR 62

Query: 61 INIDNMIILAHTLDTPLWKL 80
          +++     +A  L      L
Sbjct: 63 VDLLEFHRIALALGCDPASL 82


>gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans
          2CP-1]
 gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans
          2CP-1]
          Length = 410

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LTQ ++  + G A++ +  +E G+   +   +I LA  L   +  LL
Sbjct: 7  LGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGERRPSNAELIKLAGFLKVSVHDLL 66

Query: 82 K 82
          +
Sbjct: 67 R 67


>gi|157692960|ref|YP_001487422.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032]
 gi|157681718|gb|ABV62862.1| transcriptional regulator SinR [Bacillus pumilus SAFR-032]
          Length = 111

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  R E   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 1  MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1058]
          Length = 120

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RKEA LTQK+I  + G  Q    + E+GK     + +   A   +  +  L
Sbjct: 1  MFPERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|307545411|ref|YP_003897890.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217435|emb|CBV42705.1| probable transcriptional regulator [Halomonas elongata DSM 2581]
          Length = 196

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +   TG ++S++S++E G +  +I   + LA  L+  + +L 
Sbjct: 21 RLKLLRKKLGVTLEALAEGTGLSKSYLSKVERGLNNPSIAAALKLAKALNVQVEELF 77


>gi|294500383|ref|YP_003564083.1| transcriptional regulator [Bacillus megaterium QM B1551]
 gi|294350320|gb|ADE70649.1| transcriptional regulator [Bacillus megaterium QM B1551]
          Length = 77

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +R +  LTQ+++ ++ G  +  +S +E G+   ++   + + + ++  L +L 
Sbjct: 13 NNVKVVRVKMNLTQQQLADKVGITRQTVSLIEKGQYNPSLKLCLQICYVVEETLDELF 70


>gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
          Length = 376

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R+E  LTQ++I N  G +++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 9  ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 67


>gi|322420048|ref|YP_004199271.1| two componentXRE family transcriptional regulator [Geobacter sp.
          M18]
 gi|320126435|gb|ADW13995.1| two component transcriptional regulator, XRE family [Geobacter
          sp. M18]
          Length = 231

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            F    R +R+E  L+Q ++   +   + +IS +E GK   ++ ++  LA  L+T 
Sbjct: 5  EAFGIVIRRLRRERTLSQDKLSIASCLDRKFISNIEGGKQQPSLVSIFALASALNTS 61


>gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
          Length = 376

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R+E  LTQ++I N  G +++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 9  ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 67


>gi|134298756|ref|YP_001112252.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051456|gb|ABO49427.1| putative transcriptional regulator, XRE family [Desulfotomaculum
          reducens MI-1]
          Length = 106

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +RK    ++ ++   +G +Q++IS+LE G+    ID++  +  +L   L +  
Sbjct: 9  KITKLRKSVGWSKNKLAKESGLSQAYISQLEAGQKQPTIDSLDRICSSLGLTLAEFF 65


>gi|9630190|ref|NP_046617.1| putative SPbeta phage repressor [Bacillus phage SPBc2]
 gi|16079161|ref|NP_389985.1| Xre family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221310009|ref|ZP_03591856.1| hypothetical protein Bsubs1_11581 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314331|ref|ZP_03596136.1| hypothetical protein BsubsN3_11502 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319253|ref|ZP_03600547.1| hypothetical protein BsubsJ_11428 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323529|ref|ZP_03604823.1| hypothetical protein BsubsS_11557 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81342058|sp|O31943|YONR_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized HTH-type
          transcriptional regulator yonR
 gi|2634522|emb|CAB14020.1| putative transcriptional regulator (Xre family); phage SPbeta
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|3025543|gb|AAC13038.1| putative SPbeta phage repressor [Bacillus phage SPbeta]
          Length = 108

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  R     +Q+ + +  G  +    + E GK+  ++  +  L++ L      L
Sbjct: 1  MFGERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFL 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum
          ATCC 27405]
          Length = 374

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R+E  LTQ++I N  G +++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 7  ARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDELM 65


>gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 274

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R+E  +++ ++    G +   I+  E G    N D ++ +A   D  +  L
Sbjct: 3  LFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIAEYFDVTVDYL 62

Query: 81 L 81
          +
Sbjct: 63 V 63


>gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
          Length = 174

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK+  L+Q+++ N     +  +S+ E G S  + D++I L+  L T +  L
Sbjct: 1  MLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|289705933|ref|ZP_06502309.1| helix-turn-helix domain-containing protein [Micrococcus luteus
          SK58]
 gi|289557341|gb|EFD50656.1| helix-turn-helix domain-containing protein [Micrococcus luteus
          SK58]
          Length = 132

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 2  PRRKRDEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          PR +   P + +  +   R    +  R++R+    T +E+ +    +  ++SE+E G+  
Sbjct: 18 PRPRAATPDIKERSMPLLRHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKE 77

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
           + + +  +   LD PL  LL+
Sbjct: 78 ASSELLASICQALDIPLSYLLR 99


>gi|239631261|ref|ZP_04674292.1| predicted protein [Lactobacillus paracasei subsp. paracasei
          8700:2]
 gi|239525726|gb|EEQ64727.1| predicted protein [Lactobacillus paracasei subsp. paracasei
          8700:2]
          Length = 222

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   +TQ+++  +    +  IS  E  KS  ++  ++ L+   DT L +LL
Sbjct: 23 FGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQLL 82

Query: 82 K 82
          K
Sbjct: 83 K 83


>gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|297193838|ref|ZP_06911236.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197721253|gb|EDY65161.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 289

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185]
 gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185]
          Length = 191

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|257417719|ref|ZP_05594713.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|45827617|gb|AAS78452.1| BcrR [Enterococcus faecalis]
 gi|257159547|gb|EEU89507.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 204

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LTQ+++  +   +++ IS+ E+GK   N++++  ++      + +LL
Sbjct: 3  FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNMESLKCISKFFSVTIDELL 62


>gi|83589149|ref|YP_429158.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572063|gb|ABC18615.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 78

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + IF    + +R++  L+ +++ +  G  ++  I++ E G  + ++D +I +A   D  L
Sbjct: 6  KKIFALRLKFLREQHNLSTQKLADALGLKSKGAITQFEKGIISPSVDTLISIADFFDVSL 65

Query: 78 WKLL 81
            L+
Sbjct: 66 DYLV 69


>gi|319743893|gb|EFV96285.1| XRE family transcriptional regulator [Streptococcus agalactiae
          ATCC 13813]
          Length = 150

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  +  R E KLTQ ++ +     +  IS  E G    N D +  L+   +  +    
Sbjct: 7  VGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKTIDDFF 66

Query: 82 KP 83
           P
Sbjct: 67 PP 68


>gi|297153601|gb|ADI03313.1| transcriptional regulator, XRE family protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 161

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++  E+  R G +++ +S+LE GK    I+ +  LA  L  PL  LL 
Sbjct: 1  MSGSELARRAGLSKATLSQLEAGKGNPTIETLDALAIALRIPLTDLLT 48


>gi|170783251|ref|YP_001711585.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157821|emb|CAQ03026.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 152

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            R +R+   L+Q+++    G +Q+ +S  E+G S   +  +   AH L+  +   ++P
Sbjct: 50  LRRVREHRSLSQEQLGALMGVSQATVSSFESGASEPKLATIRRYAHALNVVVEHSVRP 107


>gi|163754238|ref|ZP_02161361.1| transcriptional regulator [Kordia algicida OT-1]
 gi|161326452|gb|EDP97778.1| transcriptional regulator [Kordia algicida OT-1]
          Length = 255

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N +++R     +Q+      G+++S +   E G+S   ID +I L+     P+  L+K
Sbjct: 6  KNIKHLRSLKSFSQERFAETLGWSRSMVGSYEEGRSEPPIDRLIDLSDHFKLPIDILVK 64


>gi|134096404|ref|YP_001101479.1| hypothetical protein HEAR3251 [Herminiimonas arsenicoxydans]
 gi|133740307|emb|CAL63358.1| Conserved hypothetical protein; putative cupin domain
          [Herminiimonas arsenicoxydans]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  ++ E     A L          R+ R  A LT  ++  +   ++S IS++E G +T 
Sbjct: 9  PGTEQLEKKSPTASL------GLRLRHARLVAGLTLLQLAQKAACSESLISKIERGSATP 62

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          ++  +  LA  L+T +  L+
Sbjct: 63 SLAMLHRLAMALETNISSLM 82


>gi|89053166|ref|YP_508617.1| anaerobic benzoate catabolism transcriptional regulator
          [Jannaschia sp. CCS1]
 gi|88862715|gb|ABD53592.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Jannaschia sp. CCS1]
          Length = 297

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +  AIL  +    +  R  R   +++++ +   +G +  ++++LE G   I+I  +  +A
Sbjct: 12 IDAAILALQARVGDRVRAARASKRISRRVLSETSGVSPRYLAQLEGGDGNISIGLLFRVA 71

Query: 71 HTLDTPLWKLL 81
            LD  L  L+
Sbjct: 72 DALDVSLEALV 82


>gi|53721872|ref|YP_110857.1| DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|76819198|ref|YP_337591.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|83718127|ref|YP_439754.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|126443021|ref|YP_001062243.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|134279324|ref|ZP_01766037.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|167616328|ref|ZP_02384963.1| DNA-binding protein [Burkholderia thailandensis Bt4]
 gi|167723169|ref|ZP_02406405.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167742145|ref|ZP_02414919.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167827698|ref|ZP_02459169.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|167914434|ref|ZP_02501525.1| DNA-binding protein [Burkholderia pseudomallei 112]
 gi|167922336|ref|ZP_02509427.1| DNA-binding protein [Burkholderia pseudomallei BCC215]
 gi|226197706|ref|ZP_03793281.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|237509861|ref|ZP_04522576.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|242312177|ref|ZP_04811194.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|254183291|ref|ZP_04889883.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254189926|ref|ZP_04896435.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254193108|ref|ZP_04899543.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254300194|ref|ZP_04967640.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|52212286|emb|CAH38308.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|76583671|gb|ABA53145.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|83651952|gb|ABC36016.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|126222512|gb|ABN86017.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|134249743|gb|EBA49824.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|157810269|gb|EDO87439.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|157937603|gb|EDO93273.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|169649862|gb|EDS82555.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|184213824|gb|EDU10867.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|225930315|gb|EEH26327.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|235002066|gb|EEP51490.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|242135416|gb|EES21819.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
          Length = 80

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          L        ++   + R +R+ A LTQ ++  R    QS++S++E G+  ++I
Sbjct: 2  LPSIHHPRYVVLRTHLRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 54


>gi|88810779|ref|ZP_01126036.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis
           Nb-231]
 gi|88792409|gb|EAR23519.1| transcriptional regulator, XRE family protein [Nitrococcus mobilis
           Nb-231]
          Length = 128

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           M   KR E  L  A L + ++   +  R  R+   +TQ  + N  G   +++S+LE GK 
Sbjct: 42  MAALKRGEEELIPAELGDALMQGESPIRVWRQYRGVTQAALANAAGITAAYVSQLEAGKR 101

Query: 60  TINIDNMIILAHTLDTPLWKLL 81
             +++ +  +A  L   +  LL
Sbjct: 102 QPSVEVLRAMARKLSVDIDDLL 123


>gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium]
          Length = 75

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ R +R +   +TQ+E+ +R G  +  I+ +E  K + +++    +A     P+  + +
Sbjct: 8  NSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKYSPSLEAAFRIAEVFGVPIGDVFQ 67


>gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 471

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R+  +++Q ++    G + S+++ +E  +  I +  ++ LA        +L++
Sbjct: 9  GSRVQRLRRAKRVSQADLAVALGISASYLNLIEHNRRRITVPLLMKLAGYFGIEPGELVE 68


>gi|261758784|ref|ZP_06002493.1| transcriptional regulator [Brucella sp. F5/99]
 gi|261738768|gb|EEY26764.1| transcriptional regulator [Brucella sp. F5/99]
          Length = 340

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|260778027|ref|ZP_05886920.1| predicted transcriptional regulator [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260606040|gb|EEX32325.1| predicted transcriptional regulator [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 207

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      ++IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGERIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|91779338|ref|YP_554546.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|296157048|ref|ZP_06839885.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|91691998|gb|ABE35196.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia xenovorans LB400]
 gi|295892934|gb|EFG72715.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 190

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 28/53 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +  R +R+  K T  +     G ++ ++S++E G ++ +I ++  +A+ L  
Sbjct: 15 GSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIANALGV 67


>gi|89897132|ref|YP_520619.1| hypothetical protein DSY4386 [Desulfitobacterium hafniense Y51]
 gi|89336580|dbj|BAE86175.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 184

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           I  NN + IR+E KL+  ++ + T  ++  + ++E G+S+  I  +  +A  L  P
Sbjct: 6  QIVANNLKRIREEMKLSLDKVADLTDVSKGMLRQIEAGESSPTIKTIWKIASGLKIP 62


>gi|53718580|ref|YP_107566.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|126440552|ref|YP_001058052.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126453277|ref|YP_001065289.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|167718493|ref|ZP_02401729.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167814662|ref|ZP_02446342.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|167844691|ref|ZP_02470199.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|167893219|ref|ZP_02480621.1| DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|167901673|ref|ZP_02488878.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
 gi|217419739|ref|ZP_03451245.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|237811203|ref|YP_002895654.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|242316552|ref|ZP_04815568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1106b]
 gi|254181462|ref|ZP_04888059.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254196408|ref|ZP_04902832.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|52208994|emb|CAH34933.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
 gi|126220045|gb|ABN83551.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126226919|gb|ABN90459.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1106a]
 gi|169653151|gb|EDS85844.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|184212000|gb|EDU09043.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|217397043|gb|EEC37059.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576]
 gi|237504755|gb|ACQ97073.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|242139791|gb|EES26193.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei
          1106b]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719]
 gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192]
 gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719]
 gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192]
 gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62


>gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 130

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  + +RKE  LTQ ++    G ++S I+  ET +   + + +  +A   +  +  
Sbjct: 1  MTFSDRLKELRKEKNLTQGDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|324992002|gb|EGC23924.1| transcriptional regulator [Streptococcus sanguinis SK405]
          Length = 71

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|325280366|ref|YP_004252908.1| helix-turn-helix domain-containing protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324312175|gb|ADY32728.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM
          20712]
          Length = 104

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 9  PHLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           H+      +R  F             +  R+   LTQ+E+ N  G  ++ IS +E GK 
Sbjct: 15 KHIGKKGTPKRDQFEADLNSSLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGK- 73

Query: 60 TINIDNMIILAHTLDTP 76
           +    +  +   +   
Sbjct: 74 NLTFSTIARVFKAMGIS 90


>gi|297184311|gb|ADI20428.1| predicted transcriptional regulators [uncultured alpha
          proteobacterium EB080_L43F08]
          Length = 190

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + R +RK   +T  E+  + G +  W+S++E   S+  I+ +  LA     PL
Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPL 67


>gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato Max13]
 gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          morsprunorum str. M302280PT]
 gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 127

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            D +   R +     + +RK   L+Q ++    G     +S  E G +   I+ +I +A
Sbjct: 7  SGDTVDTLRSVVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIA 66

Query: 71 HTLDTPLWKLL 81
             +    +LL
Sbjct: 67 TVFNVAPGELL 77


>gi|291557516|emb|CBL34633.1| Helix-turn-helix [Eubacterium siraeum V10Sc8a]
          Length = 221

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQK++    G AQ+ +S  E GK    ++ ++  A   +     LL
Sbjct: 5  FPRILSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRKCGLEFLVKAADYYNVSTDYLL 64


>gi|194017717|ref|ZP_03056327.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC
          7061]
 gi|194010617|gb|EDW20189.1| HTH-type transcriptional regulator SinR [Bacillus pumilus ATCC
          7061]
          Length = 113

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  R E   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 3  LIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|209885004|ref|YP_002288861.1| transcriptional regulator, XRE family with cupin sensor
          [Oligotropha carboxidovorans OM5]
 gi|209873200|gb|ACI92996.1| transcriptional regulator, XRE family with cupin sensor
          [Oligotropha carboxidovorans OM5]
          Length = 189

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +    F+ +R+  + + +E  ++TG ++S +S++E G ++     +  LA      + +L
Sbjct: 4  VLATRFKELREGRRWSLREAADKTGVSKSMLSKIERGLTSPTATVLGKLAEGFGISISQL 63

Query: 81 L 81
          +
Sbjct: 64 V 64


>gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62


>gi|148379637|ref|YP_001254178.1| phage regulatory protein [Clostridium botulinum A str. ATCC 3502]
 gi|148289121|emb|CAL83215.1| phage regulatory protein [Clostridium botulinum A str. ATCC 3502]
          Length = 78

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82
           R +R +   TQ+ +  R G  Q +IS LE G+   + I  +  L+H L     KLL+
Sbjct: 6  LRKLRTKLGYTQETLGERIGVEQPYISRLENGEIEFMTIGKLKKLSHALQVHPVKLLE 63


>gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
 gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|73538955|ref|YP_299322.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Ralstonia eutropha JMP134]
 gi|72122292|gb|AAZ64478.1| Helix-turn-helix motif [Ralstonia eutropha JMP134]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+  + +  ++  R+G +++ IS++E G+++     +  L+     PL  LL
Sbjct: 16 VRVERESREWSLADLAERSGVSKAMISKIERGEASPTATVLGKLSGAFGLPLSMLL 71


>gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 502

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            +   +       R +R+E  LTQ  +    G + S++++LE  +  I +  ++ L   
Sbjct: 25 RVVRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTER 84

Query: 73 LDTP 76
           D P
Sbjct: 85 FDLP 88


>gi|17549183|ref|NP_522523.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
 gi|17431435|emb|CAD18113.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +R+  +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 5  LQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60


>gi|115359028|ref|YP_776166.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115284316|gb|ABI89832.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 72

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK+   L+Q     + G  +S+ + +E GK +  +  +  ++  L   L +L 
Sbjct: 10 GARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQGKHSATLQMLARISQGLGVSLQELF 69

Query: 82 K 82
          +
Sbjct: 70 E 70


>gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 217

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++        RKE K+TQ ++  + G +   +S+ ETGK   +   M  L   L   +
Sbjct: 17 DQIMIGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKCMPDASLMPELCEQLGISI 76

Query: 78 WKLL 81
            L 
Sbjct: 77 NDLF 80


>gi|315655103|ref|ZP_07908005.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
           51333]
 gi|315490584|gb|EFU80207.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
           51333]
          Length = 179

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           R  P    +    R       R +R+   LT +++  +   +  ++SE+E G+   + + 
Sbjct: 71  RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 130

Query: 66  MIILAHTLDTP 76
           +  + + L+ P
Sbjct: 131 LASICYALEAP 141


>gi|326201174|ref|ZP_08191046.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325988742|gb|EGD49566.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 111

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R  R++  LT+++       +  +I ++E G+ T++++  + +   L    
Sbjct: 12 GIRIRTAREKIGLTREQFAEAVDLSALYIGQIERGQRTMSLNTFVRILECLHVDP 66


>gi|302876393|ref|YP_003845026.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302579250|gb|ADL53262.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 118

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPL 77
          +     + IRKE  LTQ+E  ++ G ++ +  ++E G++    +  +  L+     P+
Sbjct: 1  MLSEKLKQIRKEMHLTQQEFADKLGISRGYYCDMERGRNKGTNVKVISKLSDVTGKPM 58


>gi|167839435|ref|ZP_02466119.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 80

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          L        ++   + R +R+ A LTQ ++  R    QS++S++E G+  ++I
Sbjct: 2  LPSIHHPRYVVLRTHLRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 54


>gi|114799924|ref|YP_759016.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114740098|gb|ABI78223.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 384

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 28/68 (41%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +        R  R  A +TQ++     G ++  +  +E G+     + ++ LA   +
Sbjct: 6  SSVDPKELGERLRRARTRADVTQEQAAQIIGLSRPTLVAIEKGQRRPQPEELVALAAAYN 65

Query: 75 TPLWKLLK 82
            + +LL+
Sbjct: 66 VGVAELLR 73


>gi|313898840|ref|ZP_07832374.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956422|gb|EFR38056.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 150

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N+  + RK++ L+Q+E+  + G ++  IS+ ET ++  +I     +A      L +L+
Sbjct: 3  LGNSLFHARKKSGLSQEEVAEKIGVSRQTISKWETNETVPDIYQSKKMAKLYRISLDELI 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|306826280|ref|ZP_07459614.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431556|gb|EFM34538.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 116

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 39/80 (48%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           ++K+   ++S   ++E+ +  N  + +R    L Q E+    G ++  IS LE  + T +
Sbjct: 31  KKKKMCYNVSKLRIKEKGMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTPS 90

Query: 63  IDNMIILAHTLDTPLWKLLK 82
           +   + ++   + P+  + +
Sbjct: 91  VVIALKISQIFNEPVESVFR 110


>gi|304390894|ref|ZP_07372846.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325777|gb|EFL93023.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 112

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RKEA L+Q E+    G  +  I  +E      +++   ++   L   L +L 
Sbjct: 53  ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELF 110


>gi|299069355|emb|CBJ40621.1| putative transcriptional regulator [Ralstonia solanacearum CMR15]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +R+  +L+  E+  R G ++S +S++E   +   +  +  LA+ L   L   L
Sbjct: 5  LQGLRQRQRLSLDELSRRAGVSKSMLSQIERNLTNPTVAVLWRLANALGVSLTDFL 60


>gi|293402420|ref|ZP_06646556.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304083|gb|EFE45336.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 72

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  ++Q+E+  + G  +  I  +E G+   +I   I +   L   L  L 
Sbjct: 5  KIKMARMELDMSQEELAKKVGATRQTIGLIEAGRYNPSIKLCINICIALHKHLDDLF 61


>gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 161

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE+ LTQ+E+  +    +  I   E  ++  + + +I++A T    L +L+
Sbjct: 3  FNEQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNPPDFEMIILIAKTFGVSLDELI 62


>gi|269956326|ref|YP_003326115.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica
          DSM 15894]
 gi|269305007|gb|ACZ30557.1| transcriptional regulator, XRE family [Xylanimonas
          cellulosilytica DSM 15894]
          Length = 145

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N R+ R+ A L+Q E+  R G A S +S +E+G    +   +  L   +  P   L
Sbjct: 3  NIRHARERAGLSQAELARRAGIAPSNLSAIESGTRPASAAMVNRLLDAMGRPSVAL 58


>gi|219669930|ref|YP_002460365.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219540190|gb|ACL21929.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 81

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWKL 80
                 RK  ++TQ ++  R G    ++S++ET      I++  +  +A     P  K 
Sbjct: 16 GLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPISLKTLFAIADLFHVPPHKF 75

Query: 81 LK 82
          L+
Sbjct: 76 LE 77


>gi|167772580|ref|ZP_02444633.1| hypothetical protein ANACOL_03958 [Anaerotruncus colihominis DSM
          17241]
 gi|167665058|gb|EDS09188.1| hypothetical protein ANACOL_03958 [Anaerotruncus colihominis DSM
          17241]
          Length = 101

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N    R +  L+Q+E+  R   + +  +E+E  +   N++ +  ++        
Sbjct: 26 KFILACNLLEYRLDKHLSQEEMAFRIDLSVTSYAEIERAQVHTNLEILDYISRATGLSPA 85

Query: 79 KLLKP 83
          +LL P
Sbjct: 86 QLLTP 90


>gi|163761537|ref|ZP_02168609.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43]
 gi|162281251|gb|EDQ31550.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43]
          Length = 216

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 5  KRDEPHLSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           +       A+   R         +  R  RK+  +T  ++   TG +   +S++E G  
Sbjct: 11 PQILSQDPHAVREPRENNLERAIGHEVRAYRKKLGITVTDLSAATGVSIGMLSKIENGNI 70

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
          + ++  +  L+  L  P+    K
Sbjct: 71 SPSLTTLQSLSRALGVPVTAFFK 93


>gi|154500023|ref|ZP_02038061.1| hypothetical protein BACCAP_03681 [Bacteroides capillosus ATCC
          29799]
 gi|150271621|gb|EDM98878.1| hypothetical protein BACCAP_03681 [Bacteroides capillosus ATCC
          29799]
          Length = 118

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  RKE  LTQ+++ + +  +   I+++E  +   +   +  LA  +   L  L+
Sbjct: 9  LGDALRAARKEKSLTQEQLADESHVSTKQIADIEKARRNPSYLILKALAKVIHLSLDSLM 68

Query: 82 KP 83
           P
Sbjct: 69 YP 70


>gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 193

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER I     + +R E+ LT + + + +G +++ IS +E G+++     +  +   L   L
Sbjct: 10 ERSI-GERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLARICAALGLSL 68


>gi|331002826|ref|ZP_08326340.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon
          107 str. F0167]
 gi|330413315|gb|EGG92683.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon
          107 str. F0167]
          Length = 104

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R+   +TQ+E+    G  Q  I + E   S ++ D +  ++   +  L +L++
Sbjct: 4  IRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELIE 60


>gi|315034706|gb|EFT46638.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315578681|gb|EFU90872.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 83

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NF+  R++ KLTQKE+  +   ++ ++ +LE+G S+ +    +I+A     PL  L 
Sbjct: 12 NFKMEREKLKLTQKELAEKLDLSEVYVRKLESGASSPSTKKAVIIAEFFGKPLDYLF 68


>gi|291453422|ref|ZP_06592812.1| DNA-binding protein [Streptomyces albus J1074]
 gi|291356371|gb|EFE83273.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 289

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +++  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 10 NPTVRRRRL-GQELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 68

Query: 73 LDTP 76
           +  
Sbjct: 69 YEVE 72


>gi|289422894|ref|ZP_06424724.1| transcriptional regulator, xre family [Peptostreptococcus
          anaerobius 653-L]
 gi|289156699|gb|EFD05334.1| transcriptional regulator, xre family [Peptostreptococcus
          anaerobius 653-L]
          Length = 212

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IR E  LTQ+++ +    ++  +S  E  K+  +I+ +I ++   +  L +L+
Sbjct: 3  FGEQIKKIRAEKNLTQQKMADMLNVSRQAVSNWENDKNLPDIEMIINMSRAFNMTLDELV 62


>gi|270291920|ref|ZP_06198135.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|322375120|ref|ZP_08049634.1| putative helix-turn-helix protein [Streptococcus sp. C300]
 gi|270279448|gb|EFA25290.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|321280620|gb|EFX57659.1| putative helix-turn-helix protein [Streptococcus sp. C300]
          Length = 287

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F N ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGNVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLQQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|254454592|ref|ZP_05068029.1| DNA-binding protein [Octadecabacter antarcticus 238]
 gi|198268998|gb|EDY93268.1| DNA-binding protein [Octadecabacter antarcticus 238]
          Length = 189

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E      + R +RK   LT   +    G +  W+S++E   S  +I ++  +A  LD  
Sbjct: 7  PEIHTLGADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVLDVS 66

Query: 77 LWKLLK 82
          +  L +
Sbjct: 67 VSSLFR 72


>gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652]
 gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT
           652]
          Length = 231

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 38  MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 97

Query: 80  LLK 82
             +
Sbjct: 98  FFR 100


>gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6]
          Length = 381

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+   LTQ E+  +   +   IS+ ET     +I  +  LA  L   + +L++
Sbjct: 7  GTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHGLPDISLLEPLAAALGVSVLELMQ 66


>gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 189

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +RKE +LTQ+++  R G     +S  ETG +  ++  ++ LA   D  +  ++
Sbjct: 7  GSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSNMPDLSILVELADFYDVDIRDII 65


>gi|254383003|ref|ZP_04998358.1| hypothetical protein SSAG_02660 [Streptomyces sp. Mg1]
 gi|194341903|gb|EDX22869.1| hypothetical protein SSAG_02660 [Streptomyces sp. Mg1]
          Length = 299

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R    +  R +R+ A LTQ  +  + G +   +   E+GKS  + + +  LA  L  
Sbjct: 1  MPVRQFDGHLMRRVRRAADLTQGAVAEKLGVSVPAVVGWESGKSVPDGEKLPALAQALGM 60

Query: 76 PLWKLL 81
           L +L 
Sbjct: 61 DLDELF 66



 Score = 35.0 bits (79), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKS 59
           +P   +      D +   R+    +  ++R +A  +Q +    TG  +   ++  E G+ 
Sbjct: 51  LPALAQALGMDLDELFPRRL--PPDLADLRCDAGYSQYQTAAITGTRSAGPVANAERGRR 108

Query: 60  TINIDNMIILAHTLDTPLWKLL 81
            ++   + +LA      +  LL
Sbjct: 109 PLSDSFLPLLAQAYGVSVPDLL 130


>gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62


>gi|118592886|ref|ZP_01550274.1| DNA-binding protein, putative [Stappia aggregata IAM 12614]
 gi|118434420|gb|EAV41073.1| DNA-binding protein, putative [Stappia aggregata IAM 12614]
          Length = 191

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+    +Q+E+  R G    +IS+LE  K   ++  +  +   +   L +  
Sbjct: 14 VGLRLRAIREAHGYSQRELAKRAGVTNGFISQLEAAKINTSLSALKRVLDGIPIGLSEFF 73


>gi|53716415|ref|YP_105155.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121597232|ref|YP_991127.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124381577|ref|YP_001025521.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126442447|ref|YP_001064011.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126446100|ref|YP_001077587.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|126458019|ref|YP_001076933.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|167000254|ref|ZP_02266073.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|167725174|ref|ZP_02408410.1| DNA-binding protein [Burkholderia pseudomallei DM98]
 gi|167744105|ref|ZP_02416879.1| DNA-binding protein [Burkholderia pseudomallei 14]
 gi|167821307|ref|ZP_02452987.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|167829646|ref|ZP_02461117.1| DNA-binding protein [Burkholderia pseudomallei 9]
 gi|167899756|ref|ZP_02487157.1| DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|167908062|ref|ZP_02495267.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
 gi|167916410|ref|ZP_02503501.1| DNA-binding protein [Burkholderia pseudomallei 112]
 gi|167924271|ref|ZP_02511362.1| DNA-binding protein [Burkholderia pseudomallei BCC215]
 gi|217424415|ref|ZP_03455914.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|226194042|ref|ZP_03789643.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|237509646|ref|ZP_04522361.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|238561521|ref|ZP_00441977.2| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|242313514|ref|ZP_04812531.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|254177387|ref|ZP_04884043.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254182642|ref|ZP_04889236.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|254185685|ref|ZP_04892203.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254192472|ref|ZP_04898911.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254203094|ref|ZP_04909456.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254208427|ref|ZP_04914776.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254296435|ref|ZP_04963891.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|52422385|gb|AAU45955.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121225030|gb|ABM48561.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|126221938|gb|ABN85443.1| DNA-binding protein [Burkholderia pseudomallei 668]
 gi|126231787|gb|ABN95200.1| DNA-binding protein [Burkholderia pseudomallei 1106a]
 gi|126238954|gb|ABO02066.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147746139|gb|EDK53217.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147751114|gb|EDK58182.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|157806343|gb|EDO83513.1| DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|157933371|gb|EDO89041.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698427|gb|EDP88397.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|169649230|gb|EDS81923.1| DNA-binding protein [Burkholderia pseudomallei S13]
 gi|184213177|gb|EDU10220.1| DNA-binding protein [Burkholderia pseudomallei 1655]
 gi|217392880|gb|EEC32903.1| DNA-binding protein [Burkholderia pseudomallei 576]
 gi|225933987|gb|EEH29973.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9]
 gi|235001851|gb|EEP51275.1| DNA-binding protein [Burkholderia pseudomallei MSHR346]
 gi|238524516|gb|EEP87949.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|242136753|gb|EES23156.1| DNA-binding protein [Burkholderia pseudomallei 1106b]
 gi|243063746|gb|EES45932.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|261826389|gb|ABN00454.2| DNA-binding protein [Burkholderia mallei NCTC 10229]
          Length = 179

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M   +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 1  MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 56


>gi|13541016|ref|NP_110704.1| transcription regulator [Thermoplasma volcanium GSS1]
          Length = 194

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R +RK   ++QK++   TG +QS+I+ LE G        +  +   L     K
Sbjct: 10 LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEK 63


>gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911]
 gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911]
          Length = 69

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK + L+Q+E+    G ++  I+ +E  K   ++     LA +L   + +L 
Sbjct: 3  NQIKEVRKSSGLSQEELAKACGVSRQTINAIENNKYDPSLALAFQLAESLGMTVDQLF 60


>gi|302559931|ref|ZP_07312273.1| PbsX family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
 gi|302477549|gb|EFL40642.1| PbsX family transcriptional regulator [Streptomyces griseoflavus
          Tu4000]
          Length = 165

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 15 LGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73


>gi|290960421|ref|YP_003491603.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260649947|emb|CBG73063.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 80

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +FR  R EA L+  ++  + G ++S + ++E G++  +  N+  +A  L   +  LL P
Sbjct: 6  KSFRRRRIEAGLSVTDLARQAGVSKSHLCDVENGRAGFSPKNLKKIADILGCTIRDLLLP 65


>gi|300771128|ref|ZP_07081004.1| XRE family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33861]
 gi|300761798|gb|EFK58618.1| XRE family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33861]
          Length = 205

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  + IRK   +T +++ +R G ++  IS++E  ++  ++  +I +   L+  L +  K
Sbjct: 23 SRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGALEIDLTEFFK 81


>gi|258653119|ref|YP_003202275.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258556344|gb|ACV79286.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 225

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + IR+  + T +E+   +G  + ++S++E   ++ ++  ++ +  TL  PL  L +
Sbjct: 19 GAKLKAIRRAQRRTLEEVAEASGLTKGFLSKIERDLASASVAALLRICATLGIPLSSLFE 78


>gi|228993734|ref|ZP_04153639.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
 gi|228765945|gb|EEM14594.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
          Length = 77

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R   VNN   +R E + +Q E+ NR G ++  I+ +E  +   ++     +AH L    
Sbjct: 5  QRGSLVNNLIVLRAEKRWSQTELANRVGVSRQTIASIEANRYNPSLILAFEIAHVLGKEF 64

Query: 78 WKLLK 82
           ++ +
Sbjct: 65 HEVFQ 69


>gi|167769353|ref|ZP_02441406.1| hypothetical protein ANACOL_00679 [Anaerotruncus colihominis DSM
          17241]
 gi|167668321|gb|EDS12451.1| hypothetical protein ANACOL_00679 [Anaerotruncus colihominis DSM
          17241]
          Length = 114

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78
           I   N R +R    +TQ+++   +G   + +S LE   K    +  +  +A  L     
Sbjct: 5  QIIQKNIRYLRTTLGITQEQLAFISGLTSACVSRLERDSKCNPTVQTLDHIAEGLKIQTA 64

Query: 79 KLL 81
          +L 
Sbjct: 65 QLF 67


>gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
 gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
           571]
          Length = 301

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +    R IRK   + Q E     G +Q  +S+ E  K       ++ +A     P + L 
Sbjct: 62  YARRIREIRKNLGMNQAEFAAALGVSQGSVSKWEAAKEQPRTTALLKIAELAGLPSFSLF 121


>gi|170737741|ref|YP_001779001.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169819929|gb|ACA94511.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P
Sbjct: 14 IRDLRKHRKITLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64


>gi|24372846|ref|NP_716888.1| transcriptional regulator, putative [Shewanella oneidensis MR-1]
 gi|24346951|gb|AAN54333.1|AE015570_7 transcriptional regulator, putative [Shewanella oneidensis MR-1]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + R +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L    
Sbjct: 4  GASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62


>gi|21222594|ref|NP_628373.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|256786334|ref|ZP_05524765.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|9857155|emb|CAC04034.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 141

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|150016139|ref|YP_001308393.1| helix-turn-helix domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149902604|gb|ABR33437.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 184

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I  +  + IR + +L+  E    TG +++ + ++E G+S   +  +  ++  L   
Sbjct: 7  IIGSKLKEIRNKRELSLDEAAKLTGVSKAMLGQIERGQSNPTVSTLWKISTGLKVS 62


>gi|186680864|ref|YP_001864060.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nostoc punctiforme PCC 73102]
 gi|186463316|gb|ACC79117.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nostoc
           punctiforme PCC 73102]
          Length = 531

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +        RK   L+Q+E+   TG +QSWI ++E G+    +++ ++L   L+ 
Sbjct: 474 LLGEQILQARKNLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQLLLRKVLNM 528


>gi|258515463|ref|YP_003191685.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257779168|gb|ACV63062.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 116

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N + +R  A L QK I    G  QS IS+ E+G+  I+ D +  +A     P+  
Sbjct: 6  KTIGANIKELRDNAGLGQKHIAGYLGVDQSLISKFESGERAISSDMLDKIAALFCCPVSV 65

Query: 80 LLKP 83
          +  P
Sbjct: 66 IASP 69


>gi|167768271|ref|ZP_02440324.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1]
 gi|167709795|gb|EDS20374.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1]
          Length = 84

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++    G  +  I  +E G     +   + +   L+  L  L 
Sbjct: 24 KRIKIARLECDMSQEDLAKTVGVTRQTIGLIEAGNYNPTLKLCLAICKALNKTLDDLF 81


>gi|167590295|ref|ZP_02382683.1| transcriptional regulator, XRE family protein [Burkholderia
          ubonensis Bu]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  E+ +R G +  ++S++E G S   + ++  +   L  P
Sbjct: 14 IRDLRKHRKVTLNELADRIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64


>gi|134281019|ref|ZP_01767728.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|134247325|gb|EBA47410.1| DNA-binding protein [Burkholderia pseudomallei 305]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|85706378|ref|ZP_01037472.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          217]
 gi|85669151|gb|EAQ24018.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          217]
          Length = 468

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 29/65 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           + +     R +R++   TQ ++      + S+I+ LE  + ++++  ++ LA       
Sbjct: 2  AKTLIGPRLRQLRRDRGQTQADMARMLNVSPSYINLLENNQRSLSVQMLMSLADAYAVDW 61

Query: 78 WKLLK 82
            L +
Sbjct: 62 RDLTR 66


>gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated
          protein [Neisseria gonorrhoeae 35/02]
          Length = 236

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F +  +  RK   L+Q+ +      +QS I+ LE+G       N+  LA  LD   + L
Sbjct: 4  FKDRLKEARKNKNLSQENLAKLAEVSQSTIAALESG-RNKKATNIAKLAKILDVSAFWL 61


>gi|227821987|ref|YP_002825958.1| putative transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
 gi|227340987|gb|ACP25205.1| putative transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
          Length = 466

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +RK+  LTQ  +      + S+I+ +E  +  +  + ++ LA      L  L
Sbjct: 8  LGPRLRRLRKDLGLTQAHMAADLDVSPSYIALMERNQRPVTAEVLLRLAKAYKIDLSSL 66


>gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758]
 gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758]
          Length = 313

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKE  LTQ+++  +   +   +S  ETG +  ++  ++ LA   D  + +LL
Sbjct: 10 LKQCRKEKNLTQEQLAEKFEVSARTVSRWETGINMPDLSILVQLAEYYDVEIRELL 65


>gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli
          CIAT 652]
 gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family
          [Rhizobium etli CIAT 652]
          Length = 189

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|167749863|ref|ZP_02421990.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702]
 gi|167657175|gb|EDS01305.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702]
 gi|291531021|emb|CBK96606.1| Helix-turn-helix [Eubacterium siraeum 70/3]
          Length = 221

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE  LTQK++    G AQ+ +S  E GK    ++ ++  A   +     LL
Sbjct: 5  FPRILSLLRKERGLTQKQVAADLGIAQALLSHYEKGKRECGLEFLVKAADYYNVSTDYLL 64


>gi|160884700|ref|ZP_02065703.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483]
 gi|237717098|ref|ZP_04547579.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237721923|ref|ZP_04552404.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262405867|ref|ZP_06082417.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647828|ref|ZP_06725380.1| DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294806223|ref|ZP_06765070.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|156109735|gb|EDO11480.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483]
 gi|229443081|gb|EEO48872.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229448792|gb|EEO54583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|262356742|gb|EEZ05832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636736|gb|EFF55202.1| DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|294446479|gb|EFG15099.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295085704|emb|CBK67227.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A]
          Length = 131

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I  +  + +R E  LTQ+++  +   + S   ++E G++ + +  +  +A  L+    
Sbjct: 6  KKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSAL 65

Query: 79 KLL 81
          +L 
Sbjct: 66 ELF 68


>gi|254250154|ref|ZP_04943474.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184]
 gi|124876655|gb|EAY66645.1| hypothetical protein BCPG_05038 [Burkholderia cenocepacia PC184]
          Length = 242

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
            R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 71  IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 130

Query: 83  P 83
           P
Sbjct: 131 P 131


>gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora
          maris AB-18-032]
          Length = 178

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R++R++  +T +++      + + +S++E G +  ++  +  LA   DT + +L
Sbjct: 1  MLGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATDPSLSTLRKLAQVFDTSIAEL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 118

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R +RK+   TQ+++    G  Q  +S  ETG   I++  +  LA    
Sbjct: 10 GEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLYG 61


>gi|303235946|ref|ZP_07322549.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella disiens FB035-09AN]
 gi|302483819|gb|EFL46811.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella disiens FB035-09AN]
          Length = 66

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  R+ R    ++ +E+   +    S+IS +E    +++I  +  +   L   L  L
Sbjct: 8  GNKIRDTRTAQGISVRELAKLSNVNPSYISRVENAHYSVSIVTLAKICKPLGLELVLL 65


>gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family
          [Turicibacter sanguinis PC909]
 gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family
          [Turicibacter sanguinis PC909]
          Length = 119

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R  A LTQKE+ N+   + S +S  E  +   + + ++  +   +     L
Sbjct: 1  MLGKRLKQLRNSAGLTQKELANKMNISSSAVSMYEADRRDPDTETLVKFSKVFNVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|293402337|ref|ZP_06646474.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304184|gb|EFE45436.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 286

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RKE KLTQ ++  R       +S+ ETGKS  +   M+ L   L   + +LL
Sbjct: 14 GKFIARCRKEKKLTQAQLAERLSITDRAVSKWETGKSMPDSSIMLELCKLLGITVNELL 72


>gi|189353554|ref|YP_001949181.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189337576|dbj|BAG46645.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  E+  R G +  ++S++E G S   + ++  +   L  P
Sbjct: 14 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64


>gi|169335374|ref|ZP_02862567.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258112|gb|EDS72078.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 225

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N    +RK+  ++Q+   N  G ++  IS+ ET  S    D +++++   D  L +L
Sbjct: 3  LGNKLYTLRKQKGISQETAANEIGVSRQTISKWETNSSYPEFDKLVLISKLYDISLDEL 61


>gi|168204639|ref|ZP_02630644.1| transcriptional Regulator, XRE family [Clostridium perfringens E
          str. JGS1987]
 gi|170663734|gb|EDT16417.1| transcriptional Regulator, XRE family [Clostridium perfringens E
          str. JGS1987]
          Length = 71

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  E +    N +  R +  LTQ+ +  + G     IS  E  +   +++ ++ LA  L
Sbjct: 2  KVKNEEVNLSKNLKENRLKKNLTQRALAEKCGLDFHTISLNENKERNPSLEIILRLALGL 61

Query: 74 DTPLWKLL 81
          +  L +LL
Sbjct: 62 NISLEELL 69


>gi|167461386|ref|ZP_02326475.1| transcriptional regulator, XRE family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 183

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-------INIDNMIILAHTLD 74
                 +R+E K + +E   ++  + ++I ++E G +         + D++  LA    
Sbjct: 4  LGKYLEQVRREKKFSLREAAQKSDLSYTYIRDIELGMNRKTKKKVKPSPDSLKKLAEAYG 63

Query: 75 TPLWKLLK 82
             ++LL+
Sbjct: 64 IEYYELLQ 71


>gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   L   L    
Sbjct: 4  GASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 62


>gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium
          leguminosarum bv. viciae 3841]
 gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium
          leguminosarum bv. viciae 3841]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R   KL+Q+E+  RTG   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGLAEFF 64


>gi|85373672|ref|YP_457734.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594]
 gi|84786755|gb|ABC62937.1| hypothetical protein ELI_04225 [Erythrobacter litoralis HTCC2594]
          Length = 207

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            + +  R     TQK++  R G  QS IS++E G   + I +++ +A  LD  L
Sbjct: 9  AASIKVARIAKGFTQKQLGERVGLPQSHISKIEGGNVDLQISSLVEIARALDLEL 63


>gi|16080420|ref|NP_391247.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221311317|ref|ZP_03593164.1| hypothetical protein Bsubs1_18271 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221315644|ref|ZP_03597449.1| hypothetical protein BsubsN3_18187 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221320560|ref|ZP_03601854.1| hypothetical protein BsubsJ_18155 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221324844|ref|ZP_03606138.1| hypothetical protein BsubsS_18306 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81342185|sp|O32237|RGHRB_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          rghRB
 gi|2635880|emb|CAB15372.1| putative transcriptional repressor [Bacillus subtilis subsp.
          subtilis str. 168]
          Length = 139

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    R +R+  KLT  ++   +G + + IS++E GK  T     +  LA  L  P   L
Sbjct: 4  FGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|329848824|ref|ZP_08263852.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
 gi|328843887|gb|EGF93456.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
          Length = 75

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R++R +   +Q E+  R G ++  ++ +E GK   +++    LA+  + P+ ++  P
Sbjct: 5  VRDLRMQRGWSQGELGERLGVSRQAVNAIEVGKHDPSLELTFKLAYLFNLPVEEIFHP 62


>gi|331266049|ref|YP_004325679.1| transcriptional repressor, putative [Streptococcus oralis Uo5]
 gi|326682721|emb|CBZ00338.1| transcriptional repressor, putative [Streptococcus oralis Uo5]
          Length = 69

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLFLCQSICRCLGKTLDQLF 62


>gi|293373775|ref|ZP_06620121.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|298482606|ref|ZP_07000791.1| prophage L54a [Bacteroides sp. D22]
 gi|292631265|gb|EFF49897.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|298271313|gb|EFI12889.1| prophage L54a [Bacteroides sp. D22]
          Length = 131

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I  +  + +R E  LTQ+++  +   + S   ++E G++ + +  +  +A  L+    
Sbjct: 6  KKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSAL 65

Query: 79 KLL 81
          +L 
Sbjct: 66 ELF 68


>gi|320010212|gb|ADW05062.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 285

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   +  +R R +     R +R+   +T +E+ +R   +QS IS LE G+ +I+  ++  
Sbjct: 2  PTNVNPTVRRRRL-GQELRRLREIKGMTAEEVADRLLVSQSKISRLENGRRSISQRDVRD 60

Query: 69 LAHTLDT 75
          L    + 
Sbjct: 61 LCGVYEV 67


>gi|149007308|ref|ZP_01830966.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae
          SP18-BS74]
 gi|225859187|ref|YP_002740697.1| hypothetical protein SP70585_1461 [Streptococcus pneumoniae
          70585]
 gi|307127009|ref|YP_003879040.1| hypothetical protein SP670_0875 [Streptococcus pneumoniae 670-6B]
 gi|147761112|gb|EDK68080.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae
          SP18-BS74]
 gi|225720333|gb|ACO16187.1| conserved domain protein [Streptococcus pneumoniae 70585]
 gi|306484071|gb|ADM90940.1| conserved domain protein [Streptococcus pneumoniae 670-6B]
 gi|332074745|gb|EGI85219.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17545]
          Length = 69

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++ +  G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDLTQGQLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|219667009|ref|YP_002457444.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537269|gb|ACL19008.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 184

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           I  NN + IR+E KL+  ++ + T  ++  + ++E G+S+  I  +  +A  L  P
Sbjct: 6  QIVANNLKRIREEMKLSLDKVADLTDVSKGMLRQIEAGESSPTIKTIWKIASGLKIP 62


>gi|330990791|ref|ZP_08314747.1| hypothetical protein SXCC_00701 [Gluconacetobacter sp. SXCC-1]
 gi|329762231|gb|EGG78719.1| hypothetical protein SXCC_00701 [Gluconacetobacter sp. SXCC-1]
          Length = 260

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            IF    +  R     T  +I +++  + + +S +E G    +++ +  +A  L   ++ 
Sbjct: 154 EIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIEAGLRNPSLETVYRIAEGLSVSVYY 213

Query: 80  LL 81
           L+
Sbjct: 214 LI 215


>gi|306826072|ref|ZP_07459408.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071
          str. 73H25AP]
 gi|304431788|gb|EFM34768.1| helix-turn-helix domain protein [Streptococcus sp. oral taxon 071
          str. 73H25AP]
          Length = 287

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F N ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGNVYKEIRESKGLTQEEVCGDV-LSRTSLSKIESGKTTPKYENMEFLLRQVNMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 156

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 4   RKRDEP--HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           RK+D     +S A  +   +   N +  RK+  LTQ+ +  + G  Q  +S +E G    
Sbjct: 30  RKKDTQEVQVSQATRKLAKLVGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDIAP 89

Query: 62  NIDNMIILAHTLDTPLWKLLK 82
            ++ +  +A TL   +  L +
Sbjct: 90  KLERLPDVAATLRCSVADLFR 110


>gi|302189655|ref|ZP_07266328.1| e14 prophage; putative phage repressor [Pseudomonas syringae pv.
          syringae 642]
          Length = 138

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLW 78
                 + +R  A  +Q  +    G++ QS +   E+G     + ++ ++A  L  P  
Sbjct: 22 ESLAQRLQRLRNAAGKSQAALAKLCGWSSQSRVGNYESGTREPTLGDIELMAKALGVPYG 81

Query: 79 KLL 81
           LL
Sbjct: 82 VLL 84


>gi|291534706|emb|CBL07818.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Roseburia intestinalis M50/1]
          Length = 78

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I   N R  R+   +TQ E+  R   +   I  +E G+  +++D  + + H L++  
Sbjct: 9  EIIAENIRKERRRLGITQAELAERADVSLDTIKSVENGRRAMSLDTYLNIVHALESSP 66


>gi|291521206|emb|CBK79499.1| Helix-turn-helix [Coprococcus catus GD/7]
          Length = 128

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R   K+ Q E+      + + IS +E G     +D+ I +   LD     LL
Sbjct: 12 GKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDVLDVTPDYLL 70


>gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 373

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  ++RKE  +TQ+E+ +  G ++  +S+ E+G+S  +I  +  LA   +  + +LL
Sbjct: 7  GANIASLRKEKGVTQEELADYLGISKPAVSKWESGQSYPDILLLPRLAAYFNRTVDELL 65


>gi|262383697|ref|ZP_06076833.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298375948|ref|ZP_06985904.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_19]
 gi|301311863|ref|ZP_07217785.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 20_3]
 gi|262294595|gb|EEY82527.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298266985|gb|EFI08642.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_19]
 gi|300829965|gb|EFK60613.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 20_3]
          Length = 100

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 13 DAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
               ER  F              + RK+ K+TQ E+  + G  +++IS +E G     +
Sbjct: 20 KVGSPEREEFRKEAYSYCVGQIISDARKQEKMTQSELAEKVGTNKTYISRIEKGIIEPGV 79

Query: 64 DNMIILAHTLDTPLWKLLKP 83
               +   L   + +++KP
Sbjct: 80 GLFFRIIDALGLKI-EIVKP 98


>gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
          Length = 191

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|241666493|ref|YP_002984577.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861950|gb|ACS59615.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 227

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 38  MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 97

Query: 80  LLK 82
             +
Sbjct: 98  FFR 100


>gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter
          sp. RED65]
 gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter
          sp. RED65]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK++ L+Q+E+  R G   S IS +E    + ++ ++  +   +   L +  
Sbjct: 3  VGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLGGIPLSLTEFF 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66]
          Length = 136

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK   ++Q+++    G ++  I++ E G+S  ++     LA   D  L +L
Sbjct: 1  MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 291

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R+ RKE   +Q+++  +   ++  I++ ETG    +I N+  +A      L  LL
Sbjct: 5  QTLRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISLDDLL 62


>gi|307708405|ref|ZP_07644871.1| conserved domain protein [Streptococcus mitis NCTC 12261]
 gi|307615504|gb|EFN94711.1| conserved domain protein [Streptococcus mitis NCTC 12261]
          Length = 69

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183]
 gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175]
 gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183]
 gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175]
          Length = 191

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|293570008|ref|ZP_06681088.1| transcriptional regulator, putative [Enterococcus faecium E1071]
 gi|291587380|gb|EFF19264.1| transcriptional regulator, putative [Enterococcus faecium E1071]
          Length = 154

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  RN+RK+  LTQ+E+  +   ++  IS  E G S  +++N+ +LA      +  L+
Sbjct: 3  NRLRNLRKKNNLTQEELSLQLKVSRQTISNWERGFSQPDLENLHLLASFFKVTVSYLI 60


>gi|262184314|ref|ZP_06043735.1| putative transcription regulator [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 115

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
                  + +L  R       R  R +  +T +E+ +    +  ++SELE G+  ++ +
Sbjct: 15 PAQSTRTPEPLL--REALGLTLRAFRADKGVTLRELASVARVSPGYLSELERGRKEVSSE 72

Query: 65 NMIILAHTLDTPLWKLL 81
           +  + H LD  +  +L
Sbjct: 73 LLASVCHALDVSVSDVL 89


>gi|237728418|ref|ZP_04558899.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226909896|gb|EEH95814.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 97

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + +  G  +S + ++E G+    +  +  +A  L+     L+
Sbjct: 25 FGAAVRALRMERGIAQESLAHLAGIERSHMGKVERGEHMPTLALIFKIAGALECSTAVLM 84


>gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 195

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + IR +  +T   +   TG ++S +S LE G+   +++ ++ +A     PL +L+
Sbjct: 16 GARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLLPIALAHQVPLDQLV 74


>gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans
          DSM 16841]
 gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans
          DSM 16841]
          Length = 187

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +RKE  LTQ ++  +       +S+ E G    +I  +  LA  LD  L +L+K
Sbjct: 10 ITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVGFPDIKLLEPLADVLDISLLELMK 66


>gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016]
 gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 257

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R +R+E  LTQ  I +     ++ IS+ E G+   NI+ + +L+   +  +  L+
Sbjct: 53  FAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYLI 112


>gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens
          DSM 30120]
 gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens
          DSM 30120]
          Length = 94

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I  +  + +RKE  LT  EI      +Q   S  E G + I+ID+++++A      +
Sbjct: 14 KIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSLVMIADFFKISI 71


>gi|172058590|ref|YP_001815050.1| helix-turn-helix domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171991111|gb|ACB62033.1| helix-turn-helix domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 294

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R +RK+  LTQK++ N  G  +Q+ IS++E+G  +  +D +  L+  L  P+
Sbjct: 13 LRRLRKKHNLTQKDLAN--GICSQAEISKIESGTHSPTVDLLYALSRRLQVPI 63


>gi|168183949|ref|ZP_02618613.1| ATP-dependent DNA helicase [Clostridium botulinum Bf]
 gi|182672887|gb|EDT84848.1| ATP-dependent DNA helicase [Clostridium botulinum Bf]
          Length = 78

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG---KSTINIDNMIILAHTLDT 75
           R  R+   + Q+++ +R G  Q ++S+LE     K  +N+D +  LA  L+ 
Sbjct: 2  IRIFREHKGIRQEDLASRLGITQPYLSKLENNSIYKINVNVDLIENLAMELNV 54


>gi|163740517|ref|ZP_02147911.1| transcriptional regulator, XRE family with cupin sensor domain
          [Phaeobacter gallaeciensis 2.10]
 gi|161386375|gb|EDQ10750.1| transcriptional regulator, XRE family with cupin sensor domain
          [Phaeobacter gallaeciensis 2.10]
          Length = 205

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP +    P  +        +     R  RK+  LT + + +  G +  ++S++E   +T
Sbjct: 1  MP-QTSATPKPAKTRSSPGPMLGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNAT 59

Query: 61 INIDNMIILAHTLDTPL 77
            +  +  +A  L+  L
Sbjct: 60 PTLGTLAQIASALEVGL 76


>gi|99035914|ref|ZP_01314962.1| hypothetical protein Wendoof_01000192 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 306

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 7  RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVSIV 66

Query: 79 KLL 81
           L+
Sbjct: 67 DLI 69



 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +  R     TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL+
Sbjct: 164 GKKIKEWRIVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 223


>gi|45357772|ref|NP_987329.1| hypothetical protein MMP0209 [Methanococcus maripaludis S2]
 gi|45047332|emb|CAF29765.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 184

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N + IR E  L+   +   TG ++  + ++E  +    I  ++ +A+ L      
Sbjct: 6  HVISKNLKKIRNENGLSLDAVSKLTGVSKGMLGQIEREEVNPTITTILKIANGLKISFTS 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|88858936|ref|ZP_01133577.1| Transcriptional regulator [Pseudoalteromonas tunicata D2]
 gi|88819162|gb|EAR28976.1| Transcriptional regulator [Pseudoalteromonas tunicata D2]
          Length = 119

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R E  L+Q+ + +    +   I   E G +T  +  M  LA  L  P+  L+
Sbjct: 8  FAYKLRKARLEKDLSQQNLADHLKISVQSIQHWERGANTPKLARMNQLAEILSVPVEYLM 67


>gi|332286204|ref|YP_004418115.1| transcriptional regulator, Cro/CI family protein [Pusillimonas
          sp. T7-7]
 gi|330430157|gb|AEC21491.1| transcriptional regulator, Cro/CI family protein [Pusillimonas
          sp. T7-7]
          Length = 194

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             LT   +  ++GF + ++S+LE GKST  I ++  +A  L 
Sbjct: 2  ARGLTLDALAEKSGFTKGYLSKLENGKSTPPIASLARIARALG 44


>gi|328947475|ref|YP_004364812.1| hypothetical protein Tresu_0574 [Treponema succinifaciens DSM
          2489]
 gi|328447799|gb|AEB13515.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 91

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R  R    L+Q E+  R  F+QS+ + +E+G++  ++  +I +A  L+T   +  
Sbjct: 12 EKIRLARISKGLSQLEVCTRGNFSQSFYTHVESGRNQPSLMTIIRIAEVLETNPREFF 69


>gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +R E   +Q+ +  ++  ++  IS  E  K+  ++ +++IL+      L +L+K
Sbjct: 5  KTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKNYPDVHSLLILSDLFGVSLDELIK 63


>gi|299144948|ref|ZP_07038016.1| putative prophage L54a, repressor protein [Bacteroides sp.
          3_1_23]
 gi|298515439|gb|EFI39320.1| putative prophage L54a, repressor protein [Bacteroides sp.
          3_1_23]
          Length = 131

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I  +  + +R E  LTQ+++  +   + S   ++E G++ + +  +  +A  L+    
Sbjct: 6  KKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVLNMSAL 65

Query: 79 KLL 81
          +L 
Sbjct: 66 ELF 68


>gi|294102727|ref|YP_003554585.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
 gi|293617707|gb|ADE57861.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
          Length = 114

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +    F  +R ++ LTQ ++       QS+IS+ E  +   +ID +   A     P+  
Sbjct: 5  ELIGQRFNELRSKSGLTQGQMAAYLDVDQSYISKCEKNERQFSIDILEKAASLFGCPVEY 64

Query: 80 LL 81
          ++
Sbjct: 65 IV 66


>gi|312199652|ref|YP_004019713.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311230988|gb|ADP83843.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 501

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80
           R  R+   LTQ+++ ++ GF QS++S++E+G+  I +I  +  +A  L+     +
Sbjct: 24 LRAYRQAHGLTQQQLADQLGFDQSYVSKVESGRRAIHDISTLRHIARHLELAPEDV 79


>gi|262197484|ref|YP_003268693.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262080831|gb|ACY16800.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 131

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R    LTQ+      G +  + + +E GKS  +++    +A TL+     LL
Sbjct: 10 GREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTLEVSADVLL 68


>gi|255280080|ref|ZP_05344635.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255269171|gb|EET62376.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 137

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E + F NN   +RK   L+Q EI    G  QS  +  E G   + +  M+ L+      
Sbjct: 12 PEYVEFGNNMAKLRKARGLSQAEIAAALGTLQSTYAGWEAGTRKVQLTTMLQLSKFFGVS 71

Query: 77 LWKLL 81
          +  L+
Sbjct: 72 IDVLI 76


>gi|224542992|ref|ZP_03683531.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524130|gb|EEF93235.1| hypothetical protein CATMIT_02186 [Catenibacterium mitsuokai DSM
          15897]
          Length = 117

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M ++K ++ H S+ +  + M+     R +RK    T +++ NR    +SWISE+E G++ 
Sbjct: 31 MKKKKIEDEHTSELLKYQGML----LRQLRKNTSYTMEDVANRFCKTKSWISEIENGRNN 86

Query: 61 INIDNMIIL 69
          I+  +++ L
Sbjct: 87 ISSIDLVKL 95


>gi|221209564|ref|ZP_03582545.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221170252|gb|EEE02718.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
          Length = 200

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  E+  R G +  ++S++E G S   + ++  +   L  P
Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 79


>gi|167567607|ref|ZP_02360523.1| DNA-binding protein [Burkholderia oklahomensis EO147]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+   T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLF 60


>gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 210

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M         RKE  L+Q  +    G ++  +S+ ETG+S  +  ++I LA  L   +  
Sbjct: 1  MALGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDVQD 60

Query: 80 LLKP 83
          L +P
Sbjct: 61 LAEP 64


>gi|288961553|ref|YP_003451863.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288913833|dbj|BAI75319.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IR++  L+Q+ +  R G     IS +E  +S+ ++ ++  +   +   L +  
Sbjct: 5  VGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRSSPSVSSLRKVLQGIPMSLAEFF 64


>gi|262282190|ref|ZP_06059959.1| transcription regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262644|gb|EEY81341.1| transcription regulator [Streptococcus sp. 2_1_36FAA]
          Length = 71

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA TLDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALF 59


>gi|85716570|ref|ZP_01047540.1| hypothetical protein NB311A_11977 [Nitrobacter sp. Nb-311A]
 gi|85696571|gb|EAQ34459.1| hypothetical protein NB311A_11977 [Nitrobacter sp. Nb-311A]
          Length = 114

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R+   +T + +    G + S++  LE G+  + + +    A  L      L+K
Sbjct: 4  NRIKELRESQGMTLETLAELVGLSTSYVQRLENGERNLAVKHFAAFATALRVKPEDLIK 62


>gi|114563122|ref|YP_750635.1| helix-turn-helix domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114334415|gb|ABI71797.1| helix-turn-helix domain protein [Shewanella frigidimarina NCIMB
          400]
          Length = 367

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F       RK A L+   + +  G + + I + E G +  +  N++ LA  LD      
Sbjct: 1  MFAERLERARKAAGLSMNALASEVGLSANAIKKYEHGTTMPSSSNLLKLAKALDVRSEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|331006800|ref|ZP_08330064.1| hypothetical protein IMCC1989_737 [gamma proteobacterium
          IMCC1989]
 gi|330419391|gb|EGG93793.1| hypothetical protein IMCC1989_737 [gamma proteobacterium
          IMCC1989]
          Length = 136

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N R +R +   TQ+E+    G   + ISE+E       +  ++ L   L+     
Sbjct: 1  MAFKENLRRLRHDKGFTQRELAVACGLRSASISEMERDGGDPKMSTVVKLMKGLECSADA 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|312136006|ref|YP_004003344.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          owensensis OL]
 gi|311776057|gb|ADQ05544.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis
          OL]
          Length = 177

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +R E   T +++    G      ++ E  ++  + D ++ +A   +  +  L
Sbjct: 1  MFGERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae 642]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|256377098|ref|YP_003100758.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255921401|gb|ACU36912.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R     +  ++  R   + S +S +E G+  + +D ++ LA  LDT L +L
Sbjct: 11 LVRKRVRALRLAQGWSLDDLATRAKLSPSTLSRIENGQRRLALDQLVTLAKALDTSLDQL 70

Query: 81 LK 82
          ++
Sbjct: 71 VE 72


>gi|56962989|ref|YP_174716.1| transcriptional regulator [Bacillus clausii KSM-K16]
 gi|56909228|dbj|BAD63755.1| transcriptional regulator [Bacillus clausii KSM-K16]
          Length = 135

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F +  + +R+E   +Q+++      ++  + + ET K   +I N++ L+   D     
Sbjct: 2  HSFGSKLKQLREEQGFSQEQLAKELNVSRQAVWKWETDKGLPDIQNIVRLSELFDVSTDY 61

Query: 80 LLK 82
          LLK
Sbjct: 62 LLK 64


>gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC
          49176]
 gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC
          49176]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +RK   ++Q+E+ ++   ++  +S+ E G+S  +++ +I+L+   +     +LK
Sbjct: 5  ERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSIPDLEKVILLSEYFEVTTDYILK 63


>gi|255038652|ref|YP_003089273.1| helix-turn-helix domain-containing protein [Dyadobacter
          fermentans DSM 18053]
 gi|254951408|gb|ACT96108.1| helix-turn-helix domain protein [Dyadobacter fermentans DSM
          18053]
          Length = 85

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S+ I  +      N R IR+    TQ+ +  + G +Q+  S++E   + I ++ +I +A
Sbjct: 1  MSNTIEAKMRAVARNIRKIREYRDYTQEYLAMKLGISQNAYSKIELAYTRITLERLIQIA 60

Query: 71 HTLDTPLWKLL 81
            LD     LL
Sbjct: 61 QILDVDSVDLL 71


>gi|268592470|ref|ZP_06126691.1| putative transcriptional regulator [Providencia rettgeri DSM
          1131]
 gi|291311872|gb|EFE52325.1| putative transcriptional regulator [Providencia rettgeri DSM
          1131]
          Length = 354

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  R  A L+ KE+  R G + + I + E  +S  +   +I ++  L       
Sbjct: 1  MFGERLKRARSAAGLSMKELSLRAGVSANMIKKYEHDESMPSSGVLIKMSRALGVRNEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|224536634|ref|ZP_03677173.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224521725|gb|EEF90830.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 130

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     + +R E  LTQ+++  +   + S   ++E G++ + +  +  +A  ++    
Sbjct: 6  KKIVGQRLQLLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVMNMSAI 65

Query: 79 KLLK 82
           L +
Sbjct: 66 DLFR 69


>gi|187934809|ref|YP_001885121.1| transcriptional regulator [Clostridium botulinum B str. Eklund
          17B]
 gi|187722962|gb|ACD24183.1| transcriptional regulator [Clostridium botulinum B str. Eklund
          17B]
          Length = 148

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +R    LTQ+E+ N+ G +QS I  +E  K       +I LA   +  +  L
Sbjct: 1  MLADKVKYLRNNLNLTQEELANKLGISQSSIGMIERNKRPAGRKMLIKLADFFNVTVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|162449406|ref|YP_001611773.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So
          ce 56']
 gi|161159988|emb|CAN91293.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So
          ce 56']
          Length = 371

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R  R+   L+Q  +  R    +  +  +E G++T  +D  + LA  LD  +  L 
Sbjct: 9  ANRVRERREARGLSQVALAERARLTRQSVGAIEAGRATPAVDVALRLASALDCSVEVLF 67


>gi|65321317|ref|ZP_00394276.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
          Length = 106

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E  ++   ++S IS LET  +  ++D++  +A   +  +  L+
Sbjct: 4  FGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLM 63


>gi|308175899|ref|YP_003915305.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
 gi|307743362|emb|CBT74334.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
          Length = 66

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               +  RK+  LTQ+++ +  G ++  +  +E G    +ID ++ +A  L 
Sbjct: 7  LGAELQRARKQNGLTQEQLADLAGISERTLRSIERGAGNPSIDAVLSVADVLG 59


>gi|172063826|ref|YP_001811477.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171996343|gb|ACB67261.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 65

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ + +RKE    Q+++ N  G  +  I+ +E  K    +     LA+ L T + KL +P
Sbjct: 3  NSIKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEP 62


>gi|76809006|ref|YP_333079.1| gp68 [Burkholderia pseudomallei 1710b]
 gi|76578459|gb|ABA47934.1| gp68 [Burkholderia pseudomallei 1710b]
          Length = 155

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++
Sbjct: 93  VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 149


>gi|53717350|ref|YP_105455.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|124381310|ref|YP_001024558.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126446984|ref|YP_001078890.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|254174523|ref|ZP_04881185.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254204157|ref|ZP_04910516.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254209136|ref|ZP_04915483.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|254355586|ref|ZP_04971866.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|52423320|gb|AAU46890.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|124289330|gb|ABM98599.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126239838|gb|ABO02950.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147745041|gb|EDK52122.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147750359|gb|EDK57429.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|148023679|gb|EDK82741.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|160695569|gb|EDP85539.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
          Length = 80

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          L        ++   + R +R+ A LTQ ++  R    QS++S++E G+  ++I
Sbjct: 2  LPSIHHPRYVVLRTHLRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 54


>gi|21222193|ref|NP_627972.1| regulatory protein [Streptomyces coelicolor A3(2)]
 gi|256786717|ref|ZP_05525148.1| regulatory protein [Streptomyces lividans TK24]
 gi|289770612|ref|ZP_06529990.1| regulatory protein [Streptomyces lividans TK24]
 gi|10432486|emb|CAC10320.1| putative regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289700811|gb|EFD68240.1| regulatory protein [Streptomyces lividans TK24]
          Length = 449

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R       + +R E  +TQ+++     +  ++IS LE G+   + + +  LA  L    
Sbjct: 6  DRNDIGRRVQRLRAERGMTQRQLAEPA-YTPAYISTLEAGRVRPSDEALRHLADRLGVGY 64

Query: 78 WKLLK 82
           +L+ 
Sbjct: 65 EELVT 69


>gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC
          334]
 gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str.
          Zhang]
 gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC
          334]
 gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str.
          Zhang]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +   +  + +RK   +TQ ++ +    ++  +S  ETG++  ++  +  LA      +  
Sbjct: 4  LSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDD 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|320526923|ref|ZP_08028113.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320132891|gb|EFW25431.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 144

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
          F+ I+KE  +   EI  R+G  +S +SE E GK   + I  +I +A  LD  L +L+
Sbjct: 13 FKRIKKEKGINNYEIHKRSGVLESTLSEFERGKHTDLRISTLIKIADALDVTLDELV 69


>gi|308175111|ref|YP_003921816.1| transcriptional repressor RghR RapGH repressor [Bacillus
          amyloliquefaciens DSM 7]
 gi|307607975|emb|CBI44346.1| Transcriptional repressor RghR RapGH repressor [Bacillus
          amyloliquefaciens DSM 7]
 gi|328555080|gb|AEB25572.1| Transcriptional repressor RghR RapGH repressor [Bacillus
          amyloliquefaciens TA208]
 gi|328913435|gb|AEB65031.1| Transcriptional repressor RghR RapGH repressor [Bacillus
          amyloliquefaciens LL3]
          Length = 136

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
            F    R +R++  LT  ++   +G + + IS +E GK        +  LA  L  P  
Sbjct: 2  ESFGKQLRTLREKRHLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLADALKIPYE 61

Query: 79 KLLK 82
          +L++
Sbjct: 62 ELMQ 65


>gi|307131680|ref|YP_003883696.1| DNA-binding protein [Dickeya dadantii 3937]
 gi|306529209|gb|ADM99139.1| DNA-binding protein [Dickeya dadantii 3937]
          Length = 84

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I +   R  R    +TQ+ + +  G  QS+++++E G+  +++   + +AH L    
Sbjct: 8  EYQIIIKTLREARIRNGMTQENLASFLGRPQSFVAKIENGERRLDVVEFVHIAHLLSVDH 67

Query: 78 WKLLK 82
            +L+
Sbjct: 68 SAVLE 72


>gi|255525754|ref|ZP_05392685.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296188039|ref|ZP_06856431.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
 gi|255510577|gb|EET86886.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296047165|gb|EFG86607.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium carboxidivorans P7]
          Length = 140

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    +N+RKE  L+Q+++ +    + + IS +E+G+    + + +  +A  L+    +L
Sbjct: 3  FGEFLKNLRKEKGLSQRQLADLCNISNTEISRIESGERQKPSPNILKAIAPHLEISYGEL 62

Query: 81 LK 82
          + 
Sbjct: 63 MT 64


>gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121]
 gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121]
          Length = 208

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + IR +  +T   +   TG ++S +S LE G+   +++ ++ +A     PL +L+
Sbjct: 29 GARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLLPIALAHQVPLDQLV 87


>gi|217966211|ref|YP_002351889.1| hypothetical protein LMHCC_2944 [Listeria monocytogenes HCC23]
 gi|217335481|gb|ACK41275.1| conserved domain protein [Listeria monocytogenes HCC23]
 gi|307572180|emb|CAR85359.1| HTH-type transcriptional regulator, putative [Listeria
          monocytogenes L99]
          Length = 77

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+  R +A LTQKE+    G A+  I +LE G+   +I+  + ++  L++ + ++ 
Sbjct: 5  FKEKRNKAGLTQKELGIAVGLAEISIRKLENGERDPSINTAVKISKALNSNMEEIF 60


>gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM
          13275]
 gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM
          13275]
          Length = 136

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F     ++RK+  +TQ ++  + G     +S+ E   S  +I+++  LA   D  + 
Sbjct: 3  KQSFGEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLSFPDINSIPKLAEIFDVSVD 62

Query: 79 KLLK 82
          +L++
Sbjct: 63 ELMQ 66


>gi|170734382|ref|YP_001766329.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|169817624|gb|ACA92207.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 259

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+EAK T  E+      +  ++S++E   + I++ +++ +A  L  PL  L++
Sbjct: 9  GQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIE 68


>gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 243

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 54  MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 113

Query: 80  LLK 82
             +
Sbjct: 114 FFR 116


>gi|107022224|ref|YP_620551.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116689169|ref|YP_834792.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|105892413|gb|ABF75578.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          AU 1054]
 gi|116647258|gb|ABK07899.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 206

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D  + ER+      R +R     T   +  R+G ++S IS +E   ++     +  LA 
Sbjct: 10 DDTGINERI--ARRVRELRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAA 67

Query: 72 TLDTPLWKLL 81
           L   L  L 
Sbjct: 68 GLGVSLAGLF 77


>gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens
          str. C58]
 gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens
          str. C58]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R    ++Q+E+  R G   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 5  LGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFF 64


>gi|75761861|ref|ZP_00741789.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74490644|gb|EAO53932.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 114

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + IR +  ++Q+E+ +     +S IS  ET + + + +N   +A  L   +  LL
Sbjct: 4  LGDRIKFIRTKKNISQQELADILNVNRSAISLYETNRKSPSRENTYKIATALGVSIDYLL 63


>gi|327467239|gb|EGF12743.1| transcriptional regulator [Streptococcus sanguinis SK330]
          Length = 71

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|326329678|ref|ZP_08195999.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
 gi|325952443|gb|EGD44462.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E        R IR     T +++      + S +S LE+GK   +++ +I L   L   L
Sbjct: 4  ELKQVGPRIRAIRHSKGWTLEQLAAMAEMSPSTLSRLESGKRQASLELLIPLTRHLGVGL 63

Query: 78 WKLLKP 83
            L+ P
Sbjct: 64 DSLVTP 69


>gi|326403693|ref|YP_004283775.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
 gi|325050555|dbj|BAJ80893.1| Xre family transcriptional regulator [Acidiphilium multivorum
          AIU301]
          Length = 469

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R +R+E  LTQ+++ +R G + S+++ +E  +  +    +I L  TL   L 
Sbjct: 3  KPLIGRIVRRLRQEHGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKVDLA 62

Query: 79 KL 80
           L
Sbjct: 63 AL 64


>gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 230

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+       + +R+E  LTQ+E+        ++ +S  E G+ST   D +  LA   +  
Sbjct: 8  EKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVS 67

Query: 77 LWKLL 81
             LL
Sbjct: 68 ADYLL 72


>gi|295096644|emb|CBK85734.1| Helix-turn-helix [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 75

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE  +TQ ++    G  QS+I+++E+G+  +++   + LA  +D  +  +L
Sbjct: 14 NALKKARKEKGITQAQLAEALGKPQSFIAKVESGERRLDVVEFVHLARLVDVNISLIL 71


>gi|229589808|ref|YP_002871927.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|229361674|emb|CAY48555.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
          Length = 205

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   L   ++      +Q  +S++E  + + ++D +  L   L  PL KL 
Sbjct: 21 LGLQIKRQRQAQDLKLSDVAKIADISQGMLSKIENAQVSTSLDTLSRLCDVLGLPLSKLF 80


>gi|257066078|ref|YP_003152334.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256797958|gb|ACV28613.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 304

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               + R IR+   +++KEI  +   ++  I  +E G++   +  +I + + L   +  
Sbjct: 8  KFIGPDLRKIREAKGISRKEISEKVYVSEETIRRIEKGENDPRLSTLIPICNCLGIEIED 67

Query: 80 LL 81
          ++
Sbjct: 68 II 69


>gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC
          49626]
 gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC
          49626]
          Length = 217

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +N +  R+   LTQ+E+  +   A+S +++ ETG S   +  +  +A  L+  +  
Sbjct: 1  MSLASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQPRMGAIQRIASVLNVSVSD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|163753960|ref|ZP_02161083.1| hypothetical protein KAOT1_20097 [Kordia algicida OT-1]
 gi|161326174|gb|EDP97500.1| hypothetical protein KAOT1_20097 [Kordia algicida OT-1]
          Length = 93

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R       + IR+   LTQ ++ +R    F  S +S +E+G+    +  +  +A  LD  
Sbjct: 22 RHNLGVKIKEIRESKNLTQVDLASRIDGRFDTSNVSRIESGRINTTVFTLFRIAKALDVN 81

Query: 77 LWKLL 81
          +  LL
Sbjct: 82 IADLL 86


>gi|125718672|ref|YP_001035805.1| YorfE protein [Streptococcus sanguinis SK36]
 gi|323350334|ref|ZP_08085999.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|125498589|gb|ABN45255.1| YorfE protein, putative [Streptococcus sanguinis SK36]
 gi|322123519|gb|EFX95190.1| transcriptional regulator [Streptococcus sanguinis VMC66]
 gi|328945063|gb|EGG39219.1| transcriptional regulator [Streptococcus sanguinis SK1087]
          Length = 71

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 188

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|76817605|ref|YP_336411.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
 gi|76582078|gb|ABA51552.1| DNA-binding protein [Burkholderia pseudomallei 1710b]
          Length = 236

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 60  LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 113


>gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae
          ATCC 13813]
          Length = 153

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  RK+ KLTQKE+  +   A + IS  E G++   +DN+  +A     P  KLL
Sbjct: 21 NIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIEQMASIFGIPKSKLL 77


>gi|312881450|ref|ZP_07741244.1| predicted transcriptional regulator [Vibrio caribbenthicus ATCC
          BAA-2122]
 gi|309370872|gb|EFP98330.1| predicted transcriptional regulator [Vibrio caribbenthicus ATCC
          BAA-2122]
          Length = 207

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      + IR +  +T +E   RTG A+S +S++E  + +     M  LA  L   +
Sbjct: 24 EPLKLGYRIKEIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDM 83

Query: 78 WKLLKP 83
           +L +P
Sbjct: 84 PQLFEP 89


>gi|301299974|ref|ZP_07206200.1| helix-turn-helix protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|300852429|gb|EFK80087.1| helix-turn-helix protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 119

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ I     +  R    LT+K + +RTG ++  IS  E GK+     N++ +   LD P
Sbjct: 2  EKRINPEKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFP 60


>gi|291037463|ref|ZP_06568427.1| hypothetical protein GxylN3_01335 [Gluconacetobacter xylinus NBRC
           3288]
          Length = 260

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            IF    +  R     T  +I +++  + + +S +E G    +++ +  +A  L   ++ 
Sbjct: 154 EIFGRRIQIFRTLQGATASQIAHKSHVSLTSLSLIEAGLRNPSLETVYRIAEGLSVSVYY 213

Query: 80  LL 81
           L+
Sbjct: 214 LI 215


>gi|302381620|ref|YP_003817443.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302192248|gb|ADK99819.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 70

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R  +  +TQ E+ +R G  +  I+ +E GK   +++    +A     PL ++ +
Sbjct: 8  NQVRTLRFLSGEMTQAELGDRIGVTRQTIAAIEAGKYAPSLEAAFRIARVFGKPLEEVFQ 67


>gi|302560110|ref|ZP_07312452.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
 gi|302477728|gb|EFL40821.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
          Length = 285

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    +  
Sbjct: 9  VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68


>gi|229827236|ref|ZP_04453305.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC
          49176]
 gi|229788854|gb|EEP24968.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC
          49176]
          Length = 371

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++    N +  RKE  LTQ+ +    G     +S+ E+G +  +I  M+ LA   +  + 
Sbjct: 2  KLKLSENIKKYRKEMNLTQEGLAEAFGVTVGAVSKWESGSTVPDIMTMMELADFFNISMD 61

Query: 79 KLL 81
           LL
Sbjct: 62 ILL 64


>gi|301066017|ref|YP_003788040.1| hypothetical protein LCAZH_0946 [Lactobacillus casei str. Zhang]
 gi|300438424|gb|ADK18190.1| hypothetical membrane protein [Lactobacillus casei str. Zhang]
          Length = 202

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   +TQ+++  +    +  IS  E  KS  ++  ++ L+   DT L +LL
Sbjct: 3  FGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|206558960|ref|YP_002229720.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198034997|emb|CAR50869.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 260

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+EAK T  E+      +  ++S++E   + I++ +++ +A  L  PL  L++
Sbjct: 9  GQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIE 68


>gi|167840807|ref|ZP_02467491.1| DNA-binding protein [Burkholderia thailandensis MSMB43]
          Length = 179

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M   +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 1  MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 56


>gi|206563935|ref|YP_002234698.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198039975|emb|CAR55953.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 185

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
 gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152]
          Length = 258

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N +++R   KLTQ+ +       +S IS  E  +S+  I+ +I  +     P+  +
Sbjct: 3  ILSKNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRSSPTIEFLIDFSKYFKIPIDII 62

Query: 81 LK 82
          +K
Sbjct: 63 IK 64


>gi|329962680|ref|ZP_08300603.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
 gi|328529514|gb|EGF56417.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
          Length = 117

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + IR+ +  TQ++I    G  +S  S  E G   +  D +  L+       + 
Sbjct: 6  QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSSLFGCEPFI 65

Query: 80 LLK 82
          L +
Sbjct: 66 LFE 68


>gi|329917226|ref|ZP_08276450.1| Transcriptional regulator, MerR family [Oxalobacteraceae
          bacterium IMCC9480]
 gi|327544593|gb|EGF30073.1| Transcriptional regulator, MerR family [Oxalobacteraceae
          bacterium IMCC9480]
          Length = 198

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          RKR     S              R+ R  A LT  ++  + G ++S IS++E   +T ++
Sbjct: 5  RKRVLGIASGTTTAAPATLGLRLRHARLVAGLTLLQLAQKAGCSESLISKIERSLATPSL 64

Query: 64 DNMIILAHTLDT 75
            +  LA  LDT
Sbjct: 65 TMLHRLAVALDT 76


>gi|325277349|ref|ZP_08142974.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097539|gb|EGB95760.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 184

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK   LT  E+  R G +  ++S++E G S   + ++  ++  L       +KL K
Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLAK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|312873901|ref|ZP_07733939.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
 gi|311090577|gb|EFQ48983.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
          Length = 199

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + +R   K TQKE     G  Q  +S  E GK+   ID +I +A      L  L
Sbjct: 6  VSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCSVSLDWL 64


>gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
 gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
          Length = 174

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   L+Q+++ N     +  +S+ E G S  + D++I L+  L T +  L
Sbjct: 1  MLNENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|293603711|ref|ZP_06686130.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292817885|gb|EFF76947.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 109

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R    + Q+E+  + G  +S + ++E G+    +  ++ +A  L     +L+
Sbjct: 33 FGAAVRVARLTQGVAQEELAAKAGIERSHMGKIERGEHMPTLALILRIAAGLKLSAAELV 92


>gi|289644282|ref|ZP_06476368.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289505894|gb|EFD26907.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 488

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80
           R+ R+   LTQ+++  R GF QS++S++E+G+  I +I  +  +A  L      +
Sbjct: 24 LRSYRQTFGLTQQQLAERLGFDQSYVSKVESGRRAIHDISTLRHIARRLSLSPEDV 79


>gi|239981569|ref|ZP_04704093.1| DNA-binding protein [Streptomyces albus J1074]
          Length = 285

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +++  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRRLRELKGMTAEQVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516]
 gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516]
          Length = 172

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +++RK   L+Q+++ N     +  +S+ E G S  + D++I L+  L T +  L
Sbjct: 1  MLNENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus
          gordonii str. Challis substr. CH1]
 gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus
          gordonii str. Challis substr. CH1]
 gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 136

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK   ++Q+++    G ++  I++ E G+S  ++     LA   D  L +L
Sbjct: 1  MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADYFDVSLDEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 207

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+E  LTQ  I +     ++ IS+ E G+   NI+ + +L+   +  +  L+
Sbjct: 3  FAMRLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYLI 62


>gi|59800915|ref|YP_207627.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
 gi|194098219|ref|YP_002001274.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|268594519|ref|ZP_06128686.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|59717810|gb|AAW89215.1| hypothetical protein, putative phage associated protein [Neisseria
           gonorrhoeae FA 1090]
 gi|193933509|gb|ACF29333.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
 gi|268547908|gb|EEZ43326.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
          Length = 145

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              F ++R +   TQ E+    G  Q ++S +E  K ++    +  LA+ L     ++
Sbjct: 74  GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 131


>gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator
          [Magnetospirillum magneticum AMB-1]
 gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1]
          Length = 290

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 39/61 (63%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R    +++K++ +  G ++ ++++LE G++ ++++ + +LA  +DTP+ +L+
Sbjct: 14 LGDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTPITELI 73

Query: 82 K 82
          +
Sbjct: 74 E 74


>gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62


>gi|317490340|ref|ZP_07948825.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA]
 gi|325833363|ref|ZP_08165812.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1]
 gi|316910554|gb|EFV32178.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA]
 gi|325485287|gb|EGC87756.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1]
          Length = 394

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N   +R+   +TQ+ +  +   ++  +S+ + G +   +D ++ L     T L  
Sbjct: 1  MSFADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LMR 63


>gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis
          OB47]
 gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis
          OB47]
          Length = 285

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R+E  +++ ++    G +   I+  E G    N D ++ +A   +  +  L
Sbjct: 3  LFRFRLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFNVTVDYL 62

Query: 81 L 81
          +
Sbjct: 63 I 63


>gi|291010159|ref|ZP_06568122.1| hypothetical protein SeryN2_37020 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 393

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +     + +R+ AKL+Q+     +G +++ IS+ ETG+   +++ +  L +  D  
Sbjct: 321 RGVLGARLKLLRERAKLSQRGAAAVSGVSRTRISDFETGRDVPSVEKLGALLNVYDVS 378



 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 15  ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              ER+      + +R  A L+Q++    +G     IS  E G+   +   +  L    D
Sbjct: 150 SATERISLGARLKTLRDAAGLSQRDAATLSGVDHREISHYELGERVPSEQRLGALLDAYD 209

Query: 75  TPLWK 79
            P+ +
Sbjct: 210 VPVAE 214



 Score = 38.8 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRT---GFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             +    +R+ A L+Q+    +    G  Q+ IS  E+G++  +++ +  L +     + 
Sbjct: 237 LGSKLTMLREAAGLSQRAAATQMRIDGINQASISAFESGRAVPSVERLGALLNVYRVSIE 296

Query: 79  K 79
           +
Sbjct: 297 E 297


>gi|290959392|ref|YP_003490574.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260648918|emb|CBG72032.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 156

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tabaci ATCC 11528]
          Length = 131

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D +   R +     + +RK + L+Q ++  + G     I   E G +   I+ +I +A  
Sbjct: 9  DTVDTVRSVVGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGITLPGIEQLIRIATI 68

Query: 73 LDTPLWKLL 81
           +    +LL
Sbjct: 69 FNVAPGELL 77


>gi|253752177|ref|YP_003025318.1| DNA-binding membrane protein [Streptococcus suis SC84]
 gi|253754003|ref|YP_003027144.1| DNA-binding membrane protein [Streptococcus suis P1/7]
 gi|253755938|ref|YP_003029078.1| DNA-binding membrane protein [Streptococcus suis BM407]
 gi|251816466|emb|CAZ52102.1| putative DNA-binding membrane protein [Streptococcus suis SC84]
 gi|251818402|emb|CAZ56230.1| putative DNA-binding membrane protein [Streptococcus suis BM407]
 gi|251820249|emb|CAR46699.1| putative DNA-binding membrane protein [Streptococcus suis P1/7]
 gi|319758564|gb|ADV70506.1| putative DNA-binding membrane protein [Streptococcus suis JS14]
          Length = 158

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +++RK+  LTQ++   +    +  +S  E  K+  +++ +I+++      L +L+
Sbjct: 3  FGQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLI 62


>gi|257792471|ref|YP_003183077.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476368|gb|ACV56688.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 395

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N   +R+   +TQ+ +  +   ++  +S+ + G +   +D ++ L     T L  
Sbjct: 1  MSFADNLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LMR 63


>gi|30263992|ref|NP_846369.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Ames]
 gi|47778251|ref|YP_022674.1| prophage lambdaba02, repressor protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49186831|ref|YP_030083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Sterne]
 gi|165872207|ref|ZP_02216846.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0488]
 gi|167633712|ref|ZP_02392036.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0442]
 gi|167641029|ref|ZP_02399286.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0193]
 gi|170688718|ref|ZP_02879922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0465]
 gi|170705922|ref|ZP_02896385.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0389]
 gi|177654321|ref|ZP_02936250.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0174]
 gi|254683686|ref|ZP_05147546.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          CNEVA-9066]
 gi|254721522|ref|ZP_05183311.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A1055]
 gi|254736031|ref|ZP_05193737.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Western North America USA6153]
 gi|254743922|ref|ZP_05201605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Kruger B]
 gi|254754299|ref|ZP_05206334.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Vollum]
 gi|254758010|ref|ZP_05210037.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Australia 94]
 gi|30258636|gb|AAP27855.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda
          Ba03]
 gi|47551956|gb|AAT35408.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49180758|gb|AAT56134.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          Sterne]
 gi|164712154|gb|EDR17692.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0488]
 gi|167511079|gb|EDR86468.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0193]
 gi|167531118|gb|EDR93805.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0442]
 gi|170129462|gb|EDS98326.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0389]
 gi|170667234|gb|EDT17993.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0465]
 gi|172080811|gb|EDT65892.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str.
          A0174]
          Length = 114

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E  ++   ++S IS LET  +  ++D++  +A   +  +  L+
Sbjct: 4  FGENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLM 63


>gi|332884436|gb|EGK04695.1| hypothetical protein HMPREF9456_03306 [Dysgonomonas mossii DSM
          22836]
          Length = 97

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            ++I +E  +TQK++ +R    +  +S+  + K    I  +  +A+ LD  + +L +P
Sbjct: 5  RVKDILREKGITQKDLADRLNITEVGLSKSLSEKGNPTISTLDNIANALDVNITELFEP 63


>gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 136

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK   ++Q+++    G ++  I++ E G+S  ++     LA   D  L +L
Sbjct: 1  MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae Cit 7]
 gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae FF5]
          Length = 182

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|262200774|ref|YP_003271982.1| transcriptional regulator [Gordonia bronchialis DSM 43247]
 gi|262084121|gb|ACY20089.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 141

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ R  A+++ +++  R G +  ++S++E G    + D +  +A  L      L
Sbjct: 37 IRSQRVAAEVSLRQLAERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSAEVL 91


>gi|256393684|ref|YP_003115248.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM
           44928]
 gi|256359910|gb|ACU73407.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM
           44928]
          Length = 215

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 32  EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            A L+  E+  R   ++S +S+LE+G    +++ +  L   L  P  +L  P
Sbjct: 51  RADLSLSEVARRADLSKSTLSQLESGIGNPSLETLWALCTALGIPFGQLFDP 102


>gi|255975390|ref|ZP_05425976.1| prophage Lp1 protein 8 [Enterococcus faecalis T2]
 gi|255968262|gb|EET98884.1| prophage Lp1 protein 8 [Enterococcus faecalis T2]
          Length = 125

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R E KLTQ+E+ +  G  +   +  E+GK   + + +  LA   +     L
Sbjct: 1  MFHVKIKELRNEKKLTQQEVADYLGITRPAYTAYESGKRQPDFETLQKLATLFNVTTDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|291297755|ref|YP_003509033.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290566975|gb|ADD39940.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 115

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            PH    +L  R I     R IR+    T  ++ +    +  ++SELE G+   + + +
Sbjct: 5  AIPHTPRPLL--RTILGGVLRGIRRHQGRTLSDVADAARVSMQYLSELERGRKEASSEIL 62

Query: 67 IILAHTLDTPLWKLL 81
            +   L   L  +L
Sbjct: 63 AAVCEALRVELSDVL 77


>gi|222087277|ref|YP_002545812.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221724725|gb|ACM27881.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 180

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           + AI           R IR  + L+Q E+ ++   +   I + E+GK+ ++   +  +A
Sbjct: 26 DTQAIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIA 85

Query: 71 HTLDTPL 77
          + L+ P+
Sbjct: 86 NCLNVPI 92


>gi|148643588|ref|YP_001274101.1| HTH XRE-like family transcriptional regulator [Methanobrevibacter
          smithii ATCC 35061]
 gi|148552605|gb|ABQ87733.1| predicted transcriptional regulator, HTH XRE-like family
          [Methanobrevibacter smithii ATCC 35061]
          Length = 115

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  I       +R+   ++QK +      +Q ++S++  GK  +++  +  L       
Sbjct: 3  VDNKIVGERMEFLRENMGVSQKNLAEYLDISQPYLSQIAAGKRPMSLTILDKLCALFGCS 62

Query: 77 LWKLL 81
             LL
Sbjct: 63 EQYLL 67


>gi|186473323|ref|YP_001860665.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184195655|gb|ACC73619.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 189

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +A+ L  
Sbjct: 13 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGV 66


>gi|107023961|ref|YP_622288.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116691048|ref|YP_836671.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|105894150|gb|ABF77315.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia AU 1054]
 gi|116649137|gb|ABK09778.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia HI2424]
          Length = 259

 Score = 49.2 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+EAK T  E+      +  ++S++E   + I++ +++ +A  L  PL  L++
Sbjct: 9  GQRIRRLRREAKKTLLEVATEANLSVGFLSQVERHLTGISLSSLVNVAKALGVPLGTLIE 68


>gi|313905625|ref|ZP_07838987.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469572|gb|EFR64912.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 506

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  N   + RKE KL+Q+E+ + TG  +S +S+LE+     +I  +  L+  LD    +
Sbjct: 7  KLLANTVVSKRKEKKLSQQELADATGINRSMLSKLESRDYIPSIPQLEALSEVLDFDPSE 66

Query: 80 L 80
          +
Sbjct: 67 M 67


>gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 131

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R       R +R++  L+  ++  RTG + S++S LE G+S  +   +  L + L  
Sbjct: 16 RQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSVPSFTLLSRLGNELGV 72


>gi|167565527|ref|ZP_02358443.1| DNA-binding protein [Burkholderia oklahomensis EO147]
 gi|167572634|ref|ZP_02365508.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 80

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          L        +I   + R +R+ A LTQ ++  R    QS++S++E G+  ++I
Sbjct: 2  LPSIHHPRYVILRTHLRALRRAAGLTQTQLAERLRIDQSYLSKIERGERYVDI 54


>gi|163737555|ref|ZP_02144972.1| hypothetical protein RGBS107_18528 [Phaeobacter gallaeciensis
          BS107]
 gi|161389081|gb|EDQ13433.1| hypothetical protein RGBS107_18528 [Phaeobacter gallaeciensis
          BS107]
          Length = 51

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+++       +S+ISE+E  K + +ID +  +AH LD    +L 
Sbjct: 1  MSQEQLALAADLDRSYISEIELAKFSASIDVLERIAHALDIAPKELF 47


>gi|149201279|ref|ZP_01878254.1| transcriptional regulator, XRE family with cupin sensor domain
          [Roseovarius sp. TM1035]
 gi|149145612|gb|EDM33638.1| transcriptional regulator, XRE family with cupin sensor domain
          [Roseovarius sp. TM1035]
          Length = 209

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   +T +++ N  G + S++S++E   +   +  +  +A  LD  +   +
Sbjct: 14 LGRRIRKRRQLMSMTLQDLSNGCGVSVSYLSQIERDNAVPTLGTLAEIAAALDVSIDHFI 73


>gi|29830555|ref|NP_825189.1| DNA-binding protein [Streptomyces avermitilis MA-4680]
 gi|29607667|dbj|BAC71724.1| putative DNA-binding protein [Streptomyces avermitilis MA-4680]
          Length = 158

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|330817706|ref|YP_004361411.1| transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327370099|gb|AEA61455.1| transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 183

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK+  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|326445696|ref|ZP_08220430.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Streptomyces clavuligerus ATCC 27064]
          Length = 419

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTLDTPL 77
          +    R +R+   L Q+E  +R G +Q+ +S LE   G+   ++D +  +A     P 
Sbjct: 23 YGAVIRRVRQILGLGQREFADRCGLSQAALSRLENRGGRGGYDMDILARVATAAGLPH 80


>gi|294787640|ref|ZP_06752884.1| DNA-binding protein [Simonsiella muelleri ATCC 29453]
 gi|294483933|gb|EFG31616.1| DNA-binding protein [Simonsiella muelleri ATCC 29453]
          Length = 135

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 34/59 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R IR+E K +Q+E+ N+ G + +  +++E G++ + +  +  LA      +++L++
Sbjct: 5  EKIRKIREEKKWSQEELANKLGLSTNGYAKIERGETRLTLSRLFQLAEIFKLDIFELIQ 63


>gi|294816970|ref|ZP_06775612.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Streptomyces clavuligerus ATCC 27064]
 gi|294321785|gb|EFG03920.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Streptomyces clavuligerus ATCC 27064]
          Length = 423

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHTLDTPL 77
          +    R +R+   L Q+E  +R G +Q+ +S LE   G+   ++D +  +A     P 
Sbjct: 27 YGAVIRRVRQILGLGQREFADRCGLSQAALSRLENRGGRGGYDMDILARVATAAGLPH 84


>gi|257887020|ref|ZP_05666673.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733]
 gi|257898175|ref|ZP_05677828.1| prophage Lp1 protein 8 [Enterococcus faecium Com15]
 gi|257823074|gb|EEV50006.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733]
 gi|257836087|gb|EEV61161.1| prophage Lp1 protein 8 [Enterococcus faecium Com15]
          Length = 127

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    + +R   K+TQ+E+ ++ G  +   +  E+GK   +   +  LA+  D     
Sbjct: 4  EMFPEKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDY 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei
          subsp. paracasei ATCC 25302]
 gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei
          subsp. paracasei ATCC 25302]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +   +  + +RK   +TQ ++ +    ++  +S  ETG++  ++  +  LA      +  
Sbjct: 4  LSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDD 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|218848124|ref|YP_002454675.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842]
 gi|218546255|gb|ACK98648.1| HTH-type transcriptional regulator SinR [Bacillus cereus G9842]
          Length = 60

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            +  R     TQ ++  ++G  Q  IS +E G     +I ++  +A  L   L +LL
Sbjct: 3  KVKEKRLNKGWTQSKLAEKSGVPQPTISHIENGTLKNPSIKSIKNIASALGINLEELL 60


>gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 140

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTP 76
          E M F    R +R+   LTQ ++    G +   IS  E G+S      +   LA  LDT 
Sbjct: 7  ENMSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTS 66

Query: 77 LWKLLK 82
             L+ 
Sbjct: 67 HDYLVT 72


>gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42]
 gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family
          [Rhizobium etli CFN 42]
          Length = 189

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R E  LT  E+   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEASPTASLLARVCAALGLSL 64


>gi|71279897|ref|YP_269962.1| DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71145637|gb|AAZ26110.1| DNA-binding protein [Colwellia psychrerythraea 34H]
          Length = 179

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +R + KLTQ ++ +     ++ ++ +E+ +S  +I  ++ +A  L   +  L+
Sbjct: 9  IKRLRAQHKLTQTKLADMADIPRATLANMESEQSNPSITLVVKVAQALGVSVDDLI 64


>gi|114049187|ref|YP_739737.1| XRE family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890629|gb|ABI44680.1| transcriptional regulator, XRE family [Shewanella sp. MR-7]
          Length = 191

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|323487870|ref|ZP_08093128.1| immunity repressor protein [Planococcus donghaensis MPA1U2]
 gi|323398604|gb|EGA91392.1| immunity repressor protein [Planococcus donghaensis MPA1U2]
          Length = 114

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 35/61 (57%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R++ K+TQ+E+    G  +  IS  E G+S+ +++ ++ +A+ L++    L
Sbjct: 1  MLSKRLKLVRQKRKMTQEELARTLGTTKGSISNYENGRSSPSVEVLVNIANILNSSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|318062605|ref|ZP_07981326.1| helix-turn-helix domain-containing protein [Streptomyces sp.
          SA3_actG]
 gi|318080566|ref|ZP_07987898.1| helix-turn-helix domain-containing protein [Streptomyces sp.
          SA3_actF]
          Length = 365

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R  A ++Q ++ ++    ++ +  +E G   ++   +  LA  L  P+   L
Sbjct: 8  GERIAEARLAAGMSQGDLASKVALDRTAMVRIEAGDRRVSALELSRLAQALGVPVAHFL 66


>gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2]
 gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2]
          Length = 149

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    +  RKE   +Q+++  +   ++  +S+ E G++  +I+ +I L+      + +
Sbjct: 1  MIFAEKLKKERKEKGWSQEDLAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTIDE 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 190

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +RKE  +TQ+E   +   +   IS  ETG +  +I  ++ +A   +  + +++
Sbjct: 7  GSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGANMPDISLLVNIAEIFNVSIPEII 65


>gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus
          214-1]
 gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus
          214-1]
          Length = 118

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              ++ R+ AKLTQ  +  +   ++  +S+ E G S  +ID ++ ++   D  L KL+
Sbjct: 8  GQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGSLPDIDRLVTMSELFDISLDKLI 66


>gi|288871375|ref|ZP_06117348.2| transcriptional regulator, Cro/CI family [Clostridium hathewayi
          DSM 13479]
 gi|288863735|gb|EFC96033.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi
          DSM 13479]
          Length = 195

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              I   N + +R+E KL+ +E+   +  ++S ++++E G+    +  +  +++ +  P
Sbjct: 15 PMNTIVAKNIKRLREEKKLSMEELSKLSSVSKSMLAQIERGEGNPTLSTLWKISNGMKVP 74

Query: 77 LWKL-LKP 83
             L ++P
Sbjct: 75 FDALTVRP 82


>gi|284045487|ref|YP_003395827.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283949708|gb|ADB52452.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 80

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R++  L+Q+ + + +G +   I E+E       I   + L   L+ PL +  
Sbjct: 11 FARTLRRQRRKQDLSQEALADASGVSAKHIGEIERENKEPGITTALRLVDGLEEPLGEFF 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|282862576|ref|ZP_06271637.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282562262|gb|EFB67803.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 477

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +R ++     R +R+E  + Q ++    G + S+ +++E  +  +    ++ +A     
Sbjct: 7  DRKVYAYAKLRRLRREHGMNQVDMARALGISTSYANQIEQSRRPLTASVLLRIAEVFGV 65


>gi|228966939|ref|ZP_04127977.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228792673|gb|EEM40237.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 114

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E   R   ++S +  LE   +  ++D +  +A  L   +  L+
Sbjct: 4  FGQNLKKFRSSRSLTQSEFGERVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63


>gi|229820721|ref|YP_002882247.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM
          12333]
 gi|229566634|gb|ACQ80485.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM
          12333]
          Length = 281

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R  R    ++Q E+  R G  Q  +S +E G+S      ++ LA +L+ PL +
Sbjct: 10 FARELRRWRGMRHVSQLELSLRAGTTQRHVSFIEQGRSRPGRTMVVRLAESLELPLRE 67


>gi|261339303|ref|ZP_05967161.1| hypothetical protein ENTCAN_05544 [Enterobacter cancerogenus ATCC
          35316]
 gi|288319163|gb|EFC58101.1| transcriptional regulator, Cro/CI family [Enterobacter
          cancerogenus ATCC 35316]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|225568758|ref|ZP_03777783.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM
          15053]
 gi|225162257|gb|EEG74876.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM
          15053]
          Length = 205

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +R+    TQ+++      +   +S+ ETGK   ++  +  LA  L   L +LL
Sbjct: 18 GSIIKELRERKGYTQRQLAESVCVSDKTVSKWETGKGLPDVGIITELASALGVSLAELL 76


>gi|170745213|ref|YP_001766670.1| XRE family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170658814|gb|ACB27868.1| transcriptional regulator, XRE family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 202

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R+E  L+ + +  R+G ++S IS++E  ++  +   +  LA  L     +L+ 
Sbjct: 23 AEEIRRRRREQGLSLETLAARSGVSRSMISKIERSEAVPSTVVLSRLAEALGVTFSRLMA 82

Query: 83 P 83
          P
Sbjct: 83 P 83


>gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum
          alkenivorans AK-01]
 gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum
          alkenivorans AK-01]
          Length = 115

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+ I       +R E  LTQ ++    G +   IS +E G +  ++  +  +A +L + L
Sbjct: 5  EKKI-GKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGSSL 63

Query: 78 WKLL 81
           +  
Sbjct: 64 KQFF 67


>gi|126724437|ref|ZP_01740280.1| Transcriptional Regulator, XRE family protein [Rhodobacterales
          bacterium HTCC2150]
 gi|126705601|gb|EBA04691.1| Transcriptional Regulator, XRE family protein [Rhodobacterales
          bacterium HTCC2150]
          Length = 199

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            + ++ R+   L+Q+E+  R+G  QS IS++E+    + + ++  LAH LD  L
Sbjct: 9  AASLKSARENKGLSQRELSARSGVPQSHISKIESNAVDLRLSSLASLAHALDLEL 63


>gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis
          BI429]
 gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis
          BI429]
          Length = 72

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R++  LTQ+++    G  Q  IS  E G++  ++D  I LA  L   +  + +
Sbjct: 3  LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAKPSLDVAIRLAKALGVSVEDVFE 59


>gi|15887370|ref|NP_353051.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
 gi|15154869|gb|AAK85836.1| transcriptional regulator [Agrobacterium tumefaciens str. C58]
          Length = 121

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R +R+   +TQKE+    G + +++S LE GK    + D +  +A   + 
Sbjct: 4  FAEAVRQLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNI 58


>gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina
          NK-01]
 gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina
          NK-01]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLSGIPMSLVEFF 62


>gi|329964525|ref|ZP_08301579.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
 gi|328524925|gb|EGF51977.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
          Length = 127

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     + +R E  LTQ+++  +   + S   ++E G++ + +  +  +A+ L+    
Sbjct: 6  KKIVGQRLQLLRMEKNLTQEQMGEQLNLSTSAYCKIEYGETDLTLTRLNKIANILNMSAA 65

Query: 79 KLL 81
          +L 
Sbjct: 66 ELF 68


>gi|325695196|gb|EGD37097.1| transcriptional regulator [Streptococcus sanguinis SK150]
          Length = 71

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|325848843|ref|ZP_08170353.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480487|gb|EGC83549.1| nucleotide sugar dehydrogenase [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 489

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK    +Q+ + + TG  ++ IS +E+     +ID + +LA  L   +  L 
Sbjct: 17 RKSKNFSQRNLSDLTGINRTMISRIESCNYVPSIDQLQVLAEVLGFDIVDLF 68


>gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato K40]
          Length = 120

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D +   R +     + +RK   L+Q ++    G     +S  E G +   I+ +I +A  
Sbjct: 2  DTVDTLRSVVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATV 61

Query: 73 LDTPLWKLL 81
           +    +LL
Sbjct: 62 FNVAPGELL 70


>gi|293384665|ref|ZP_06630522.1| putative helix-turn-helix protein [Enterococcus faecalis R712]
 gi|293389067|ref|ZP_06633541.1| putative helix-turn-helix protein [Enterococcus faecalis S613]
 gi|312908458|ref|ZP_07767414.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312979359|ref|ZP_07791054.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|291078027|gb|EFE15391.1| putative helix-turn-helix protein [Enterococcus faecalis R712]
 gi|291081593|gb|EFE18556.1| putative helix-turn-helix protein [Enterococcus faecalis S613]
 gi|310625570|gb|EFQ08853.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311287864|gb|EFQ66420.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 204

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LTQ+++  +   +++ IS+ E+GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTIDELL 62


>gi|254470871|ref|ZP_05084274.1| helix-turn-helix domain protein [Pseudovibrio sp. JE062]
 gi|211960013|gb|EEA95210.1| helix-turn-helix domain protein [Pseudovibrio sp. JE062]
          Length = 160

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R +R E  L+Q+++ +  G +   +  +E G +  + + +  +A  LDT    L
Sbjct: 3  VRKLRIEKGLSQEQLAHMAGISTRTLQRIERG-ANASPETLKCIASALDTDFGDL 56


>gi|170699072|ref|ZP_02890128.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170136030|gb|EDT04302.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|153938184|ref|YP_001392454.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152934080|gb|ABS39578.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320440|gb|ADG00818.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 93

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  + +R+E +LTQ+E+      ++  +S  E      NI+N++ L+   +  L  L
Sbjct: 1  MFGDRLKELREEKELTQEELGKLLSVSRQTVSGYEAEVIEPNINNLVRLSDIFNVSLDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|53723158|ref|YP_112143.1| MerR family transcriptional regulator [Burkholderia pseudomallei
          K96243]
 gi|134281916|ref|ZP_01768623.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|254264128|ref|ZP_04954993.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
 gi|52213572|emb|CAH39625.1| putative MerR family transcriptional regulator [Burkholderia
          pseudomallei K96243]
 gi|134246978|gb|EBA47065.1| DNA-binding protein [Burkholderia pseudomallei 305]
 gi|254215130|gb|EET04515.1| DNA-binding protein [Burkholderia pseudomallei 1710a]
          Length = 193

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 70


>gi|327398295|ref|YP_004339164.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM
          10411]
 gi|327180924|gb|AEA33105.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM
          10411]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R IR +  +T +++  ++G +  ++S++E    +  I ++  +A  L   +  L 
Sbjct: 3  VGSKIREIRTKKNMTLRDLSKKSGCSLGFLSQVERDLVSPTISSLRRIADALGINIISLF 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|317485946|ref|ZP_07944802.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316922796|gb|EFV44026.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 86

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            +   +       +  RK   KL+Q+++    G  +S++S +E G    +I+ +I+L  
Sbjct: 2  KKVPYLKAALGEQLKKARKSIPKLSQEQVAIALGTERSYVSRMERGIILPSINVLILLGE 61

Query: 72 TLDTPLWKLL 81
              P   LL
Sbjct: 62 MYGVPASTLL 71


>gi|282849936|ref|ZP_06259319.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella parvula ATCC 17745]
 gi|282580373|gb|EFB85773.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella parvula ATCC 17745]
          Length = 153

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  L+      L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|256389948|ref|YP_003111512.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256356174|gb|ACU69671.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 288

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 32/70 (45%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
                      F    R  R+   ++Q ++ + +G +   +S +ETG++  + + ++ L
Sbjct: 21 QFKKQPPTAPAEFGAMLRAWRRTRNVSQLDLSSASGVSTRHLSFMETGRAKPSREMVLRL 80

Query: 70 AHTLDTPLWK 79
          A  L+ PL +
Sbjct: 81 ADELEVPLRE 90


>gi|260881429|ref|ZP_05404380.2| putative transcriptional regulator [Mitsuokella multacida DSM
           20544]
 gi|260848928|gb|EEX68935.1| putative transcriptional regulator [Mitsuokella multacida DSM
           20544]
          Length = 219

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  +IRK   ++   +  +TG ++S ++ +E G +  +I  +  +   L   L  L +
Sbjct: 46  NLNHIRKAKGMSLDVVAEQTGVSKSMLAAIEKGAANPSIGVLGKIMSGLRIELTDLTQ 103


>gi|167767683|ref|ZP_02439736.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1]
 gi|167710700|gb|EDS21279.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1]
          Length = 120

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+A  TQ++I +      ++IS +E  +  +N+  +   A  L+  +  LL
Sbjct: 19 VGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL 78

Query: 82 KP 83
          +P
Sbjct: 79 RP 80


>gi|256786094|ref|ZP_05524525.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289769990|ref|ZP_06529368.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|9857262|dbj|BAB11923.1| chitinase promoter binding protein 1 [Streptomyces lividans]
 gi|289700189|gb|EFD67618.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 285

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    +  
Sbjct: 9  VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68


>gi|21222829|ref|NP_628608.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|7635951|emb|CAB88448.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 295

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R              R       R +R+   +T +E+  R   +QS IS LE G+ +I+ 
Sbjct: 9  RPVASSVNPTV---RRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQ 65

Query: 64 DNMIILAHTLDTP 76
            +  L    +  
Sbjct: 66 RGVRDLCGVYEVE 78


>gi|86139328|ref|ZP_01057897.1| putative DNA-binding protein [Roseobacter sp. MED193]
 gi|85823831|gb|EAQ44037.1| putative DNA-binding protein [Roseobacter sp. MED193]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    +R++   +  ++   +G +++ +S LE G+ +   +++  L      P+ +LL
Sbjct: 8  LANRLATLRQDRGWSLDQLAQASGISRASLSRLEKGEVSPTAESLGQLCAAYALPMSRLL 67


>gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 199

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 20 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 79


>gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 165

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +        +RK   LTQ E+  +   +   +S+ E   S  +I  +  LA  L   +
Sbjct: 2  ETISIGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVLGVTV 61

Query: 78 WKLLKP 83
            LL P
Sbjct: 62 DDLLTP 67


>gi|317122381|ref|YP_004102384.1| cupin [Thermaerobacter marianensis DSM 12885]
 gi|315592361|gb|ADU51657.1| Cupin 2 conserved barrel domain protein [Thermaerobacter
          marianensis DSM 12885]
          Length = 254

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 27/47 (57%)

Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          T + +   +G ++S++S++E G+S I + ++  +A  L  PL    +
Sbjct: 46 TLEALSRASGLSKSFLSDIERGRSDITLTSLQRIAQALGVPLAYFFR 92


>gi|300115617|ref|YP_003762191.1| XRE family transcriptional regulator [Nitrosococcus watsoni
          C-113]
 gi|299541559|gb|ADJ29870.1| transcriptional regulator, XRE family [Nitrosococcus watsonii
          C-113]
          Length = 76

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
             N + +R  A LTQ ++  +    QS +S++E G++ ++ +  +  +A  LD  +  L
Sbjct: 3  VGKNIKGLRIAAGLTQTQLAKKAHIDQSGLSKIERGENESVTLPMLRKIAKALDCSVVAL 62

Query: 81 LK 82
          L+
Sbjct: 63 LE 64


>gi|257063413|ref|YP_003143085.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256791066|gb|ACV21736.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 106

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDT 75
          ER++         R+   LTQ+++ +    +  S+IS++E GK   ++  ++ LA  LD 
Sbjct: 23 ERLLSVGRAVAKARETNGLTQEQLAHMIDMSDHSFISKIENGKRIPSMQRLLTLADALDV 82

Query: 76 PL 77
           +
Sbjct: 83 EI 84


>gi|189462857|ref|ZP_03011642.1| hypothetical protein BACCOP_03556 [Bacteroides coprocola DSM
          17136]
 gi|189430473|gb|EDU99457.1| hypothetical protein BACCOP_03556 [Bacteroides coprocola DSM
          17136]
          Length = 105

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     +  R+   LTQ+E+    G  ++ IS++E+GKS I    +I     +      
Sbjct: 35 FLIGEAIKQTREAKNLTQEELGELMGVKRAQISKIESGKS-ITFSTIIRAFKAMGVNSAN 93

Query: 80 L 80
          L
Sbjct: 94 L 94


>gi|152969575|ref|YP_001334684.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206580692|ref|YP_002239362.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342]
 gi|238894056|ref|YP_002918790.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae
          NTUH-K2044]
 gi|262043620|ref|ZP_06016729.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288936213|ref|YP_003440272.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|290510732|ref|ZP_06550102.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp.
          1_1_55]
 gi|330010156|ref|ZP_08306698.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3]
 gi|150954424|gb|ABR76454.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|206569750|gb|ACI11526.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342]
 gi|238546372|dbj|BAH62723.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
 gi|259038958|gb|EEW40120.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|288890922|gb|ADC59240.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
 gi|289777448|gb|EFD85446.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp.
          1_1_55]
 gi|328534622|gb|EGF61198.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|111657106|ref|ZP_01407894.1| hypothetical protein SpneT_02001666 [Streptococcus pneumoniae
          TIGR4]
 gi|116517019|ref|YP_816720.1| transcriptional repressor, putative [Streptococcus pneumoniae
          D39]
 gi|148985331|ref|ZP_01818554.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae
          SP3-BS71]
 gi|148989546|ref|ZP_01820905.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae
          SP6-BS73]
 gi|148990563|ref|ZP_01821689.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae
          SP6-BS73]
 gi|148993017|ref|ZP_01822611.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae
          SP9-BS68]
 gi|148997524|ref|ZP_01825129.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae
          SP11-BS70]
 gi|149002814|ref|ZP_01827740.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae
          SP14-BS69]
 gi|149011664|ref|ZP_01832860.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae
          SP19-BS75]
 gi|168486119|ref|ZP_02710627.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00]
 gi|168489588|ref|ZP_02713787.1| conserved domain protein [Streptococcus pneumoniae SP195]
 gi|168491326|ref|ZP_02715469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|168493326|ref|ZP_02717469.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|168575882|ref|ZP_02721797.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|169834092|ref|YP_001694857.1| hypothetical protein SPH_1553 [Streptococcus pneumoniae
          Hungary19A-6]
 gi|194398183|ref|YP_002038070.1| hypothetical protein SPG_1363 [Streptococcus pneumoniae G54]
 gi|221232161|ref|YP_002511314.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854869|ref|YP_002736381.1| hypothetical protein SPJ_1321 [Streptococcus pneumoniae JJA]
 gi|225857057|ref|YP_002738568.1| hypothetical protein SPP_1441 [Streptococcus pneumoniae P1031]
 gi|225860797|ref|YP_002742306.1| hypothetical protein SPT_0851 [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|237650477|ref|ZP_04524729.1| transcriptional repressor, putative [Streptococcus pneumoniae
          CCRI 1974]
 gi|237821792|ref|ZP_04597637.1| transcriptional repressor, putative [Streptococcus pneumoniae
          CCRI 1974M2]
 gi|298229247|ref|ZP_06962928.1| transcriptional repressor, putative [Streptococcus pneumoniae
          str. Canada MDR_19F]
 gi|298255692|ref|ZP_06979278.1| transcriptional repressor, putative [Streptococcus pneumoniae
          str. Canada MDR_19A]
 gi|303254577|ref|ZP_07340681.1| transcriptional repressor, putative [Streptococcus pneumoniae
          BS455]
 gi|303259019|ref|ZP_07344998.1| hypothetical protein CGSSp9vBS293_11153 [Streptococcus pneumoniae
          SP-BS293]
 gi|303261703|ref|ZP_07347650.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae
          SP14-BS292]
 gi|303264372|ref|ZP_07350292.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae
          BS397]
 gi|303265829|ref|ZP_07351726.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae
          BS457]
 gi|303268162|ref|ZP_07353961.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae
          BS458]
 gi|307068076|ref|YP_003877042.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|116077595|gb|ABJ55315.1| transcriptional repressor, putative [Streptococcus pneumoniae
          D39]
 gi|147756579|gb|EDK63620.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae
          SP11-BS70]
 gi|147759108|gb|EDK66102.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae
          SP14-BS69]
 gi|147764095|gb|EDK71027.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae
          SP19-BS75]
 gi|147922529|gb|EDK73648.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae
          SP3-BS71]
 gi|147924201|gb|EDK75301.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147925089|gb|EDK76170.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147928218|gb|EDK79235.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae
          SP9-BS68]
 gi|168996594|gb|ACA37206.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6]
 gi|183570815|gb|EDT91343.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00]
 gi|183571900|gb|EDT92428.1| conserved domain protein [Streptococcus pneumoniae SP195]
 gi|183574439|gb|EDT94967.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|183576644|gb|EDT97172.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|183578217|gb|EDT98745.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194357850|gb|ACF56298.1| conserved domain protein [Streptococcus pneumoniae G54]
 gi|220674622|emb|CAR69186.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225723584|gb|ACO19437.1| conserved domain protein [Streptococcus pneumoniae JJA]
 gi|225724319|gb|ACO20171.1| conserved domain protein [Streptococcus pneumoniae P1031]
 gi|225727030|gb|ACO22881.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794461|emb|CBW36896.1| putative DNA-binding protein [Streptococcus pneumoniae INV104]
 gi|301800287|emb|CBW32907.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141]
 gi|301802162|emb|CBW34900.1| putative DNA-binding protein [Streptococcus pneumoniae INV200]
 gi|302598545|gb|EFL65587.1| transcriptional repressor, putative [Streptococcus pneumoniae
          BS455]
 gi|302637283|gb|EFL67771.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae
          SP14-BS292]
 gi|302639962|gb|EFL70418.1| hypothetical protein CGSSpBS293_11153 [Streptococcus pneumoniae
          SP-BS293]
 gi|302642241|gb|EFL72589.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae
          BS458]
 gi|302644564|gb|EFL74814.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae
          BS457]
 gi|302646184|gb|EFL76411.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae
          BS397]
 gi|306409613|gb|ADM85040.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|327389609|gb|EGE87954.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA04375]
 gi|332073729|gb|EGI84208.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17570]
 gi|332075003|gb|EGI85475.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41301]
 gi|332200864|gb|EGJ14936.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
 gi|332203252|gb|EGJ17320.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 69

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|33596283|ref|NP_883926.1| putative transcriptional regulatory protein [Bordetella
          parapertussis 12822]
 gi|33602055|ref|NP_889615.1| putative transcriptional regulatory protein [Bordetella
          bronchiseptica RB50]
 gi|33566052|emb|CAE36950.1| putative transcriptional regulatory protein [Bordetella
          parapertussis]
 gi|33576493|emb|CAE33571.1| putative transcriptional regulatory protein [Bordetella
          bronchiseptica RB50]
          Length = 206

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P      P +      +        R +RK  K T   +  + G  + ++S LE G+ + 
Sbjct: 12 PPMTAKSPPIPAPSPEQ---IGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSA 68

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          ++  +  +A  L + L  LL
Sbjct: 69 SVGTLHTVAGALGSSLSALL 88


>gi|14324400|dbj|BAB59328.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 196

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R +RK   ++QK++   TG +QS+I+ LE G        +  +   L     K
Sbjct: 12 LRKMRKNLGISQKDLARVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEK 65


>gi|85707344|ref|ZP_01038427.1| DNA-binding protein, putative [Roseovarius sp. 217]
 gi|85668152|gb|EAQ23030.1| DNA-binding protein, putative [Roseovarius sp. 217]
          Length = 211

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       +++R+    T +    RTG A S I ++E G+ + + +N+I +A   D  + 
Sbjct: 24 RADLGARMKSVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDIGME 83

Query: 79 KLL 81
          +L 
Sbjct: 84 RLF 86


>gi|119775778|ref|YP_928518.1| XRE family transcriptional regulator [Shewanella amazonensis
          SB2B]
 gi|119768278|gb|ABM00849.1| putative transcriptional regulator, XRE family [Shewanella
          amazonensis SB2B]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L +  
Sbjct: 4  GASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVEFF 62


>gi|332877082|ref|ZP_08444833.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
 gi|332684972|gb|EGJ57818.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral
          taxon 329 str. F0087]
          Length = 142

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RN R   +LTQ+E+  R G  ++ IS++E+GK  + I  +  +   L      +LK
Sbjct: 9  GSIIRNERIRKRLTQEELGERVGVGKAQISKIESGK-GLTIKTVTKVLDALGISASVVLK 67


>gi|296269081|ref|YP_003651713.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296091868|gb|ADG87820.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 122

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R +R     T +E+      +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 5  RHLLGDVLRRLRVRQNRTLREVSTLARVSLGYLSEVERGQKEASSELLAAICAALGVPLS 64

Query: 79 KLLK 82
          ++L+
Sbjct: 65 QVLR 68


>gi|294629979|ref|ZP_06708539.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14]
 gi|292833312|gb|EFF91661.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14]
          Length = 101

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R+ R    +TQ  +  R G  Q+ +S LE G ST  I  +  LA  LD+ L   
Sbjct: 26 LFGKAVRDRRTALGMTQSRLAARAGMTQAAVSRLEHGGSTPTIPLLERLAAALDSTLHLD 85

Query: 81 LKP 83
          + P
Sbjct: 86 IAP 88


>gi|291485900|dbj|BAI86975.1| hypothetical protein BSNT_05104 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 139

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    R +R+  KLT  ++   +G + + IS++E GK  T     +  LA  L  P   L
Sbjct: 4  FGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|238798761|ref|ZP_04642232.1| hypothetical protein ymoll0001_6250 [Yersinia mollaretii ATCC
          43969]
 gi|238717393|gb|EEQ09238.1| hypothetical protein ymoll0001_6250 [Yersinia mollaretii ATCC
          43969]
          Length = 75

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R    +TQ+ +    G  QS+I+++E G+  +++   + +A  L   L  +L+
Sbjct: 16 LRKQRIAKGITQESLATALGRPQSFIAKVENGERRLDVVEFVHIARLLGVRLEDVLE 72


>gi|257064295|ref|YP_003143967.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256791948|gb|ACV22618.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 196

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R  A L+Q+ +  +   ++  +S  ETGK+  ++ +++++++     +  L+
Sbjct: 3  VGNRIREERDRANLSQEGLAEKIFVSRQTVSNWETGKTYPDVQSLLLMSNLFGVSIDSLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 141

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
               R++RK+  LTQ+E+ ++ G  +S +++ E G+ + I    +  +A  L+    +L
Sbjct: 3  LGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPGEL 62

Query: 81 L 81
          +
Sbjct: 63 M 63


>gi|168483951|ref|ZP_02708903.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|172042755|gb|EDT50801.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|332201874|gb|EGJ15944.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47368]
          Length = 69

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLF 62


>gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662]
 gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662]
          Length = 171

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           H  + ++ ++         +R+E  +TQ E+  R G     +S  E G    +I  M+ 
Sbjct: 8  KHKKEGMILDQKKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNYMPDIATMLS 67

Query: 69 LAHTLDTPLWKLL 81
          L    +  + +LL
Sbjct: 68 LCEEFEISINELL 80


>gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 227

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+       + +R+E  LTQ+E+        ++ +S  E G+ST   D +  LA   +  
Sbjct: 5  EKKQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVS 64

Query: 77 LWKLL 81
             LL
Sbjct: 65 ADYLL 69


>gi|160897745|ref|YP_001563327.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363329|gb|ABX34942.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 131

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           F    R++R E  ++Q+ + N     +S + ++E G+    +  +  +A  L 
Sbjct: 53  FGAAVRSLRNERGISQESLANLADIERSHMGKVERGEHMPTLVIVFKIARGLG 105


>gi|160878327|ref|YP_001557295.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160426993|gb|ABX40556.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 141

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     + +RK  + TQ+ + +     +   S  ETG++    D +  LA     P+  
Sbjct: 4  ELIAKRLKELRKSFEYTQEFVASYLNIGRQAYSHYETGRNAPTTDTLYKLASLYHIPVND 63

Query: 80 LLK 82
          LLK
Sbjct: 64 LLK 66


>gi|16081273|ref|NP_393584.1| hypothetical protein Ta0106 [Thermoplasma acidophilum DSM 1728]
 gi|10639252|emb|CAC11254.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 194

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
             R +RK   ++QK++   TG +QS+I+ LE G        +  +   L     K
Sbjct: 8  EELRKMRKNLGISQKDLAKVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEK 63


>gi|328886831|emb|CCA60070.1| transcription regulator [Streptomyces venezuelae ATCC 10712]
          Length = 202

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R +  L+  E+ +R    + ++S+LE G +++++  ++ +   L   + +L 
Sbjct: 24 GARLRKFRLDRGLSLTEVAHRAEVTKGFLSQLERGLTSVSVPTLLRVCEVLRIGVGELF 82


>gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353]
          Length = 136

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK   ++Q+++    G ++  I++ E G+S  ++     LA   D  L +L
Sbjct: 1  MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|313898507|ref|ZP_07832044.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956889|gb|EFR38520.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 71

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  ++Q+E+  + G  +  I  +E G+    I   I +   L   L  L 
Sbjct: 5  KIKMARMELNMSQEELAGKVGATRQTIGLIEAGRYNPTIKLCIKICIALHKHLDDLF 61


>gi|312277953|gb|ADQ62610.1| transcriptional regulator, XRE family [Streptococcus thermophilus
          ND03]
          Length = 65

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  +TQ ++    G  +  I  +E GK   ++   I +  TLD  L +L 
Sbjct: 6  RLKAARAEHDMTQGDLAEAIGATRQTIGLIEAGKYNPSLALCIAICKTLDRTLDQLF 62


>gi|298346546|ref|YP_003719233.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
           43063]
 gi|298236607|gb|ADI67739.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
           43063]
          Length = 174

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           R  P    +    R       R +R+   LT +++  +   +  ++SE+E G+   + + 
Sbjct: 66  RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 125

Query: 66  MIILAHTLDTP 76
           +  + + L+ P
Sbjct: 126 LASICYALEAP 136


>gi|197337667|ref|YP_002157850.1| transcriptional regulator, MerR family [Vibrio fischeri MJ11]
 gi|197314919|gb|ACH64368.1| transcriptional regulator, MerR family [Vibrio fischeri MJ11]
          Length = 500

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +I+R+        RN+RK   LT +++  R          + S++S +E GK   + D
Sbjct: 4  SKSIIRQSHFLGTKIRNLRKRNHLTMEDLSTRCIRVDPENSPSVSYLSMIERGKRVPSAD 63

Query: 65 NMIILAHTLDTP 76
           + ++A      
Sbjct: 64 MLEVIATVFQKE 75


>gi|161520269|ref|YP_001583696.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160344319|gb|ABX17404.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
          Length = 200

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  E+  R G +  ++S++E G S   + ++  +   L  P
Sbjct: 29 IRDLRKHRKVTLSELAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 79


>gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis
          DSM 16823]
 gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823]
          Length = 298

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I      + RK+  ++Q ++  R   +   + + E G+S  +I  +  L+  LD  L
Sbjct: 5  KIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDVDL 62


>gi|325971877|ref|YP_004248068.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324027115|gb|ADY13874.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 197

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R    LTQ+++  +   ++  IS+ ETG+   N+ ++  LA      + +
Sbjct: 1  MQFHEKLKAYRSSYGLTQEQLGEKVFVSRVTISKWETGRGLPNLGSLQQLASLFGISVDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|300703288|ref|YP_003744890.1| hypothetical protein RCFBP_10960 [Ralstonia solanacearum
          CFBP2957]
 gi|299070951|emb|CBJ42259.1| protein of unknown function [Ralstonia solanacearum CFBP2957]
          Length = 98

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  RK+A L+Q E+  R    QS I + E G+  +++  +      +   L +L++
Sbjct: 17 LREARKKAGLSQVELAKRLELTQSIIGKCERGERRLDVIELREWCGAIGLTLSELVR 73


>gi|295838009|ref|ZP_06824942.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74]
 gi|295826798|gb|EFG65058.1| PbsX family transcriptional regulator [Streptomyces sp. SPB74]
          Length = 120

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  LA  L      L
Sbjct: 9  LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67


>gi|295105756|emb|CBL03299.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 154

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           IR+   LTQ E+  R    +  +S  E G +   ID + ++A     P+ KLL
Sbjct: 9  EIRERNGLTQAEMAERLFVTRQAVSRWECGDTQPGIDALKLIAAEFHVPIEKLL 62


>gi|259047642|ref|ZP_05738043.1| transcriptional regulator [Granulicatella adiacens ATCC 49175]
 gi|259035833|gb|EEW37088.1| transcriptional regulator [Granulicatella adiacens ATCC 49175]
          Length = 70

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK   +TQ+E+ N    ++  +  LE G+   +I     +A   +  + ++ 
Sbjct: 3  NRLEEIRKAKGITQEELANALEVSRQTVGSLENGRYNPSIILAFKIARFFEVSIEEVF 60


>gi|239930643|ref|ZP_04687596.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291439007|ref|ZP_06578397.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341902|gb|EFE68858.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 285

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    +  
Sbjct: 9  VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68


>gi|160933447|ref|ZP_02080835.1| hypothetical protein CLOLEP_02293 [Clostridium leptum DSM 753]
 gi|156867324|gb|EDO60696.1| hypothetical protein CLOLEP_02293 [Clostridium leptum DSM 753]
          Length = 119

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N+ R +R+   ++Q+E+  R G A S IS  E       +D +  +A   +  L  L+
Sbjct: 4  FGNHLRMLRERYGISQEELGRRVGRAGSVISNYENNIKIPTLDVLTTMARIYNVSLDYLV 63


>gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62


>gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533]
 gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533]
          Length = 341

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 13 DAILRERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           +I  ER I          +RK+  L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L
Sbjct: 7  KSINNERTIHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSL 66

Query: 70 AHTLDTPLWKLLK 82
          +         LLK
Sbjct: 67 SELFGVTTDYLLK 79


>gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
 gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62


>gi|134294052|ref|YP_001117788.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134137209|gb|ABO58323.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
          G4]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVPTTYFYSLSK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|322390694|ref|ZP_08064207.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
 gi|321142600|gb|EFX38065.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
          Length = 151

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +RK  KLTQ ++       Q   S  E G    N++ ++ LA   DT    LL
Sbjct: 8  FGDRLRELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPNLEAVVKLAKLFDTTTDYLL 67


>gi|296127941|ref|YP_003635191.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296019756|gb|ADG72992.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 488

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + ++     R++R    +T  ++    G A S +S LE G     +  +  +A  L   
Sbjct: 14 VDTLVLGRRVRHLRTARGMTLDDLGRAIGRAPSQVSMLENGHREPKLSLLAQVAEALGVE 73

Query: 77 LWKLL 81
          L  LL
Sbjct: 74 LGDLL 78


>gi|258626503|ref|ZP_05721343.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603]
 gi|258581214|gb|EEW06123.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603]
          Length = 180

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  + +RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKTLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family
          [Rhizobium etli 8C-3]
          Length = 219

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991]
 gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991]
          Length = 258

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +RKE  L+Q+ +  + G  +  IS+ E  +     + ++ L++  +     
Sbjct: 1  MSLGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQGFPETEKLLRLSNIFEVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|321156891|emb|CBW38880.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
          Length = 420

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
             +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QQLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLFEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA]
 gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA]
          Length = 197

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+E  LTQ+++ +  G     +S+ E G    +I+ +  L+  L TP+  LL
Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETLL 65


>gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus
          GRL 1112]
 gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus
          GRL 1112]
          Length = 147

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  R +R E  +TQ E+ N  G ++  ++  E  +    ++    LA  L   +  L
Sbjct: 2  NRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQREPKLETWQKLADYLGVSVPYL 58


>gi|308071686|ref|YP_003858295.1| hypothetical protein pCB42_p1 [Leuconostoc citreum]
 gi|295913739|dbj|BAJ07252.1| hypothetical protein [Leuconostoc citreum]
          Length = 163

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N   +RK+  LTQ+E+ +++      +  LE G+  +++ ++  +A+ L  P+  L 
Sbjct: 5  NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGE-DVSLSSLSAIANALSVPISGLF 60


>gi|291550352|emb|CBL26614.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Ruminococcus torques L2-14]
          Length = 119

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  RK   +++ ++ ++   A  +I+ +E      ++  +  L   LD  + +
Sbjct: 11 KAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQ 70

Query: 80 LLKP 83
             P
Sbjct: 71 FFFP 74


>gi|283834367|ref|ZP_06354108.1| transcriptional regulator, Cro/CI family [Citrobacter youngae
          ATCC 29220]
 gi|291069908|gb|EFE08017.1| transcriptional regulator, Cro/CI family [Citrobacter youngae
          ATCC 29220]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|261492432|ref|ZP_05988988.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496386|ref|ZP_05992780.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307971|gb|EEY09280.1| hypothetical protein COI_2118 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311891|gb|EEY13038.1| hypothetical protein COK_0856 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 132

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           NN    R    L+Q+E+  +TG +QS IS+ E   +         LA        +L
Sbjct: 74  NNLGAWRIYRNLSQQEVAEKTGLSQSAISQAERKGNRPQKRTREKLAKIYGCTPEQL 130


>gi|300779705|ref|ZP_07089561.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030]
 gi|300533815|gb|EFK54874.1| DNA-binding protein [Corynebacterium genitalium ATCC 33030]
          Length = 135

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTLDTPLW 78
            +++R    ++Q+ + + +G ++S +S LE   +        N+  +  LA+ L  P  
Sbjct: 32 RLKSVRTMRGVSQQRLADLSGLSRSQVSNLERNHNNSRRSNDPNLSTIYRLAYALRVPPV 91

Query: 79 KLL 81
           LL
Sbjct: 92 LLL 94


>gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78]
 gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG]
 gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF]
 gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78]
          Length = 219

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE  +T   +   TG + S +S LE+G     ++ ++ LA      L +L+
Sbjct: 36 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 95


>gi|302528751|ref|ZP_07281093.1| predicted protein [Streptomyces sp. AA4]
 gi|302437646|gb|EFL09462.1| predicted protein [Streptomyces sp. AA4]
          Length = 403

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  R+ A LTQ +     G ++  +  +E G  +++   ++ LA+     +  LL
Sbjct: 16 LASRIRGAREAANLTQAQAAAELGVSRPTLIAMEKGTRSVSPPELVKLANAYGRDVATLL 75

Query: 82 KP 83
          +P
Sbjct: 76 RP 77


>gi|227513209|ref|ZP_03943258.1| hypothetical protein HMPREF0497_2331 [Lactobacillus buchneri ATCC
          11577]
 gi|227083590|gb|EEI18902.1| hypothetical protein HMPREF0497_2331 [Lactobacillus buchneri ATCC
          11577]
          Length = 68

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R++R   +++Q E+       Q+ IS +E     + +D +   A  L      L
Sbjct: 1  MIGTHIRDLRSARQMSQDELGKLVNIDQTLISRVERNHRKVTVDELPKFAKALGVSTEDL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|237730277|ref|ZP_04560758.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2]
 gi|226905816|gb|EEH91734.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|225018752|ref|ZP_03707944.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum
          DSM 5476]
 gi|224948480|gb|EEG29689.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum
          DSM 5476]
          Length = 97

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    R +R   KLTQ ++  R   +++ IS  E    T ++D +  L+      
Sbjct: 5  FGCRLRELRLNKKLTQTQVARRLNLSKTTISGYENNIKTPSLDVLTQLSILYGVS 59


>gi|183981984|ref|YP_001850275.1| transcriptional regulatory protein [Mycobacterium marinum M]
 gi|183175310|gb|ACC40420.1| transcriptional regulatory protein [Mycobacterium marinum M]
          Length = 108

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 6  REVIGDVLRGERTSQGRTLREVSDTARVSLGYLSEIERGRKEPSSELLNAICDALQVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 EVL 68


>gi|168211093|ref|ZP_02636718.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|168216129|ref|ZP_02641754.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|170710849|gb|EDT23031.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|182381582|gb|EDT79061.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 65

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R  A ++Q E+  + G A+  I+ +E  K   ++D  I +A  L T L  L 
Sbjct: 2  NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59


>gi|167747596|ref|ZP_02419723.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662]
 gi|239625078|ref|ZP_04668109.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652958|gb|EDR97087.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662]
 gi|239521464|gb|EEQ61330.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 113

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RKE KL+ +E+  R      +I +LE G    ++  + I+   L T    L 
Sbjct: 11 FGAKLRGKRKECKLSYQELAERCHVNHGYIRQLEAGNKLPSVSLLFIICDVLGTSPNYLF 70


>gi|153811409|ref|ZP_01964077.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174]
 gi|149832536|gb|EDM87620.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174]
          Length = 121

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  RK   +++ ++ ++   A  +I+ +E      ++  +  L   LD  + +
Sbjct: 13 KAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQ 72

Query: 80 LLKP 83
             P
Sbjct: 73 FFFP 76


>gi|330996840|ref|ZP_08320709.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila
          YIT 11841]
 gi|329572283|gb|EGG53942.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila
          YIT 11841]
          Length = 117

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I   N + IR+ +  TQ++I    G  +S  S  E G   +  D +  +++      + 
Sbjct: 6  QIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERISNMFGCEPFI 65

Query: 80 LLK 82
          L +
Sbjct: 66 LFE 68


>gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62


>gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC
          35037]
          Length = 71

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N  R +RK+A+L+Q+ + ++ G  ++ IS  ETG S I+++N   +A      + 
Sbjct: 2  RKQTQNRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTID 61

Query: 79 KLL 81
           LL
Sbjct: 62 YLL 64


>gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 111

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
              + +R++   +  E+  +   A+S++S +E   +S  +I  +  +A  L+  +  LL
Sbjct: 6  GERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQSNPSISFIEKIADALNVSINLLL 65


>gi|297200537|ref|ZP_06917934.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|197709662|gb|EDY53696.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 279

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   D     R +     R+ R++A L+Q+E+  R   + S++ +LE G   +  D    
Sbjct: 4  PKDLDPSSSPRALLGAELRHAREKAGLSQEELGQRLFVSGSFVGQLEAGTRRMQADVARQ 63

Query: 69 LAHTLDTP 76
          L   L T 
Sbjct: 64 LDEVLGTE 71


>gi|182624949|ref|ZP_02952728.1| transcriptional Regulator, XRE family with Cupin sensor domain
          [Clostridium perfringens D str. JGS1721]
 gi|177909955|gb|EDT72365.1| transcriptional Regulator, XRE family with Cupin sensor domain
          [Clostridium perfringens D str. JGS1721]
          Length = 66

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79
          +  +N R IR E  +  +E+   +G +   I  +E+GK     I +++ LA +LD  + K
Sbjct: 1  MLGDNLRKIRTEKNIGIRELARISGVSHIIIMNIESGKSRNPTITSIMKLAKSLDITIDK 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 62


>gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens
          PCA]
 gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter
          sulfurreducens PCA]
 gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter
          sulfurreducens KN400]
          Length = 142

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  + +R E  LTQK++      G   ++I ++E G+   ++  +I ++  L  P
Sbjct: 6  GHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGEQLPSLKILIGISEALGVP 61


>gi|31795118|ref|NP_857976.1| conjugal transfer protein TrbA [uncultured bacterium]
 gi|32455873|ref|NP_862526.1| TrbA protein [Pseudomonas sp. ADP]
 gi|49176918|ref|YP_025421.1| regulatory protein for mating pair formation [Ralstonia eutropha
          JMP134]
 gi|72384303|ref|YP_293656.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Ralstonia eutropha JMP134]
 gi|13937509|gb|AAK50320.1|U66917_89 TrbA protein [Pseudomonas sp. ADP]
 gi|31746362|emb|CAD97487.1| TrbA protein [uncultured bacterium]
 gi|39777498|gb|AAR31073.1| regulatory protein for mating pair formation [Ralstonia eutropha
          JMP134]
 gi|72123656|gb|AAZ65799.1| Helix-turn-helix motif [Ralstonia eutropha JMP134]
          Length = 120

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|329941426|ref|ZP_08290705.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
 gi|329299957|gb|EGG43856.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
          Length = 278

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP      P   D     R +     R+ R++A L+Q+E+  R   + S+I +LE G   
Sbjct: 1  MPG-----PKDLDPSSSPRALLGAELRHAREKAGLSQEELGGRLFVSGSYIGQLEAGTRR 55

Query: 61 INIDNMIILAHTLDTPLW 78
          +  +   +L   L    +
Sbjct: 56 MQPEYARMLDEVLGVDFF 73


>gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Synergistetes bacterium SGP1]
          Length = 140

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  R+   + Q+E+  + G  Q+ IS +E+    ++ D ++ +A  L   + +LL
Sbjct: 5  GANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDVRELL 63


>gi|288353334|ref|YP_003422632.1| protein of unknown function DUF955 [Zymomonas mobilis subsp.
          mobilis ZM4]
 gi|285026735|gb|ADC33829.1| protein of unknown function DUF955 [Zymomonas mobilis subsp.
          mobilis ZM4]
          Length = 401

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R +     ++ RK  +L+Q+E+    G ++  IS+ E G    +   ++ +   L  P+
Sbjct: 21 RFLIPERLKDARKFMRLSQEELGKEIGVSRQAISQFERGDRNPDARTLVGIQSVLKQPI 79


>gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
 gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
          Length = 291

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 35/63 (55%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N + +RK   +TQ+++  +   ++  +S+ E+G+S   ++ ++I+       +  
Sbjct: 1  MSFSDNLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQSYPEMEKLLIICDMFHCDMDS 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|322420931|ref|YP_004200154.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320127318|gb|ADW14878.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 118

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R    +TQ+++   TG  Q  ISELE GK  +  D    LA  L    +++L
Sbjct: 59  GMALRGARYREGMTQRQLAALTGIPQRHISELENGKRQMGRDWARKLAEALRVSDYRVL 117


>gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521]
 gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521]
 gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 171

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN + IRKE  ++QK++  +     S  S  E      N   +  +A  L   +  LL
Sbjct: 9  VGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNNREPNALTLKKIADVLSVDVHDLL 68


>gi|37527292|ref|NP_930636.1| hypothetical protein plu3418 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786726|emb|CAE15792.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 82

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I +   R  R    +TQ+ +       QS+I+++E G+  +++   + +AH L    
Sbjct: 8  EYQIVIKALREARIAKGVTQENLAQALDRPQSFIAKVENGERRLDVVEFVHIAHLLSLEP 67

Query: 78 WKLLK 82
            L+K
Sbjct: 68 SVLIK 72


>gi|330809886|ref|YP_004354348.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327377994|gb|AEA69344.1| putative Transcription factor, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 200

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK  K+T  E+  R+G ++  + E+E   +  +I  +  +A  L   +  ++
Sbjct: 22 VARTLKQARKAKKITLDELSRRSGVSKGMVVEIEKCTANPSIGILCKIAAALGLSVADIV 81


>gi|325954495|ref|YP_004238155.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922]
 gi|323437113|gb|ADX67577.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922]
          Length = 113

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R  R+   L+Q+++    G   + I   E  +   +ID +  LA  L T
Sbjct: 4  FGKRLREAREAKNLSQQDLAKLIGSVHTVIGRYERDEMKPSIDVVKRLADELGT 57


>gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1]
 gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1]
          Length = 375

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK  +LTQ+E+  +   ++  IS  E+  +  ++  ++ILA+  +  + +
Sbjct: 1  MTLGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNEPDVKTLLILANIFEITVDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|319954799|ref|YP_004166066.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237]
 gi|319423459|gb|ADV50568.1| helix-turn-helix domain protein [Cellulophaga algicola DSM 14237]
          Length = 103

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           RN R+E  LTQ+++       +++IS +E   S + +  +  +  
Sbjct: 45 LRNAREEKNLTQEQLGELVDKKRTYISRVENNGSNLTLKTLYEIVE 90


>gi|311279020|ref|YP_003941251.1| Cupin 2 conserved barrel domain-containing protein [Enterobacter
          cloacae SCF1]
 gi|308748215|gb|ADO47967.1| Cupin 2 conserved barrel domain protein [Enterobacter cloacae
          SCF1]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4]
 gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4]
          Length = 194

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + IR    LT  ++ + +G +++ IS +E  +++     +  L   L   L
Sbjct: 13 AARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEASPTATLLARLCSALGQSL 67


>gi|126011121|ref|YP_001039946.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396]
 gi|124389390|gb|ABN10832.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396]
          Length = 86

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R+ RK AKL Q ++       Q  I  +E GK    + +++ L    +  +  
Sbjct: 22 EFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDD 81

Query: 80 LL 81
           L
Sbjct: 82 FL 83


>gi|83717916|ref|YP_440408.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83651741|gb|ABC35805.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 236

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 60  LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 113


>gi|81427830|ref|YP_394829.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78609471|emb|CAI54517.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  K++ +++   +G +   I+++E GKS   I+ +  L   L+ PL  L K
Sbjct: 12 GEQIKQLRQSKKISVEKLSELSGLSSLTITKIENGKSNPTINTLWKLTKCLEAPLMSLFK 71


>gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 296

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  +  RKE K++Q+E+       +  +S+ E   S  + + +I LA  L   + +L
Sbjct: 1  MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 296

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  +  RKE K++Q+E+       +  +S+ E   S  + + +I LA  L   + +L
Sbjct: 1  MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|322436278|ref|YP_004218490.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164005|gb|ADW69710.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 70

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R      Q ++   +G  +  +S LE GK  + +  +  +   LD+ L ++L
Sbjct: 8  LGQRIRDLRIARGWRQIDLAEHSGVHEVHLSLLERGKHEVGVQRLKDIVTALDSSLSEIL 67

Query: 82 K 82
          K
Sbjct: 68 K 68


>gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453]
 gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453]
          Length = 420

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  NN   +RK+  +TQ+++ N  G +   +S+ E G++  +I ++ +LA    T + ++
Sbjct: 7  VMGNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQTCPDIIHIPLLADVFGTTIDEI 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|304389736|ref|ZP_07371695.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326912|gb|EFL94151.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 174

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           R  P    +    R       R +R+   LT +++  +   +  ++SE+E G+   + + 
Sbjct: 66  RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 125

Query: 66  MIILAHTLDTP 76
           +  + + L+ P
Sbjct: 126 LASICYALEAP 136


>gi|302525598|ref|ZP_07277940.1| hypothetical protein SSMG_01980 [Streptomyces sp. AA4]
 gi|302434493|gb|EFL06309.1| hypothetical protein SSMG_01980 [Streptomyces sp. AA4]
          Length = 930

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            F      +R+ A LTQ+++  R G +   +  LE G+       + +LA  L  P
Sbjct: 7  ETFDRTLVRLRRAAGLTQEQLAQRCGLSTRGVGNLERGQRHPRRVTVQLLADGLALP 63


>gi|300811797|ref|ZP_07092268.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300497213|gb|EFK32264.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
          Length = 136

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  +  R++RK+  L+QKE+  +    Q+ ++  E G S  NI  +  LA   D     
Sbjct: 1  MMLPSKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|295106952|emb|CBL04495.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 75

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF--AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
             + R  R    L+Q+ +    G   + ++I+ +E GK  I ++ +  +A  L   +  
Sbjct: 12 LGKSIREERLAQGLSQRTLAGMIGQPNSHTYITRVEQGKIKIGLEQLGRIADALGVEVRD 71

Query: 80 LL 81
          L+
Sbjct: 72 LI 73


>gi|260887976|ref|ZP_05899239.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330838541|ref|YP_004413121.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260862227|gb|EEX76727.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329746305|gb|AEB99661.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 90

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R E  LTQKE+  ++G  QS IS +E G++  ++  +  +A  L   
Sbjct: 37 ARMEQDLTQKELAEKSGVRQSNISRIEKGQAVPSLVTLDKIAKALGKE 84


>gi|271966468|ref|YP_003340664.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509643|gb|ACZ87921.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 192

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R    LT +++      + S +S +E G+    +  +  +A  L   L +L+
Sbjct: 7  LGLRVQELRHLRGLTLQQMAGAADVSVSMLSSVERGQKAPTVVVLGRIADGLGVSLAELV 66


>gi|229065719|ref|ZP_04200943.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
 gi|228715537|gb|EEL67338.1| Transcriptional regulator, MerR [Bacillus cereus AH603]
          Length = 186

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 8  VGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 67


>gi|269124690|ref|YP_003298060.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309648|gb|ACY96022.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 282

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 32/66 (48%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S    + R       R +RK+  LTQ+ +    G+ +S +S++E G+ T + D++ +  
Sbjct: 1  MSTPSQQAREALGLRLRELRKDGGLTQRRLAELAGWVESKVSKIEHGRQTPSEDDIRLWC 60

Query: 71 HTLDTP 76
            +   
Sbjct: 61 RLVGAE 66


>gi|209549722|ref|YP_002281639.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209535478|gb|ACI55413.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 264

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            ++ R  R+  +++Q ++      +Q  +S +E+G++T + D ++ LA  L  PL  
Sbjct: 8  LGDHLREWRQRRRMSQLDLALEADISQRHLSFIESGRATPSRDMLLHLAERLGVPLRD 65


>gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
 gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678]
          Length = 191

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|91782210|ref|YP_557416.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91686164|gb|ABE29364.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 98

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          R+      R  RK   ++Q  +      +++++S LE GK T  +D +  +A  +   PL
Sbjct: 4  RLGLARGLRAARKMRGISQDGLGVS---SRTYLSALELGKQTPTLDKLDEIARAIGVHPL 60

Query: 78 WKLL 81
            L 
Sbjct: 61 SVLF 64


>gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|68697729|emb|CAJ14057.1| hypothetical protein [Streptomyces viridochromogenes]
          Length = 192

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R    LT +++ +R   + S +S +E G+    +  +  +   L      LL
Sbjct: 7  LGSRIQELRLSQSLTLQDLADRAAVSVSMLSSVERGRKAPTVVVLARIPEGLGVTAAHLL 66

Query: 82 K 82
           
Sbjct: 67 T 67


>gi|89097350|ref|ZP_01170240.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088173|gb|EAR67284.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 107

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +R+E K++  E+  + G A+S++S LE   ++  +I  +  ++  L  P+  
Sbjct: 1  MIGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKISAVLHVPVDT 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens
          CN-32]
 gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens
          CN-32]
          Length = 188

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|333031238|ref|ZP_08459299.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011]
 gi|332741835|gb|EGJ72317.1| helix-turn-helix domain protein [Bacteroides coprosuis DSM 18011]
          Length = 165

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           ER+      R +RKE  +  K +        + +S +E G+ ++ ID +  +A  L 
Sbjct: 95  ERVKIGAKIRELRKEKNIEAKALAQIANIDAANLSRIEQGRYSVGIDILSKIALALG 151


>gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 188

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q E+  +    +  +S+ E G S  + + +I ++  L+TP+  L
Sbjct: 20 MLSENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPVSTL 79

Query: 81 L 81
          L
Sbjct: 80 L 80


>gi|255325181|ref|ZP_05366287.1| helix-turn-helix domain protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255297746|gb|EET77057.1| helix-turn-helix domain protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 143

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       R  R +  +T +E+      +  ++SELE G+  ++ + +  + H LD  + 
Sbjct: 55  REALGLTLRAFRADKGVTLRELAGVARVSPGYLSELERGRKEVSSELLASVCHALDCSVS 114

Query: 79  KLL 81
            +L
Sbjct: 115 DVL 117


>gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787]
 gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787]
          Length = 118

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 10 HLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           L      E +       R+ R++ K++Q E+    G  Q+ I  +ET +S + ++ +  
Sbjct: 2  VLPQVSKSENLQEVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMKLEKLFR 61

Query: 69 LAHTLDTPLWKLL 81
          +A  LD    KLL
Sbjct: 62 IAEVLDVTPNKLL 74


>gi|160221335|gb|ABX11276.1| XRE-like transcriptional regulator [Burkholderia sp. MBA4]
          Length = 189

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +A+ L  
Sbjct: 13 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGV 66


>gi|170759140|ref|YP_001786285.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169406129|gb|ACA54540.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
          Length = 65

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE  + Q+E+ +    ++  IS LE G+   +I     +A   +  +  + 
Sbjct: 3  NKLEEIRKERGINQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60


>gi|148985572|ref|ZP_01818761.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP3-BS71]
 gi|147922292|gb|EDK73413.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP3-BS71]
 gi|301800751|emb|CBW33399.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141]
          Length = 299

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +  G     +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|59713441|ref|YP_206216.1| MerR family transcriptional regulator [Vibrio fischeri ES114]
 gi|59481689|gb|AAW87328.1| transcriptional regulator, MerR family [Vibrio fischeri ES114]
          Length = 500

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +I+R+        RN+RK   LT +++  R          + S++S +E GK   + D
Sbjct: 4  SKSIIRQSHFLGTKIRNLRKRNHLTMEDLSTRCIRVDPENSPSVSYLSMIERGKRVPSAD 63

Query: 65 NMIILAHTLDTP 76
           + ++A      
Sbjct: 64 MLEVIATVFQKE 75


>gi|72383761|ref|YP_293115.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Ralstonia eutropha JMP134]
 gi|72123104|gb|AAZ65258.1| Helix-turn-helix motif [Ralstonia eutropha JMP134]
          Length = 113

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R+ A +TQ+E        Q  IS LE G  + ++  +  +A  L T    LL
Sbjct: 29 FGEAVKIKRRAAGMTQEEFAEVLEMNQQAISRLERGVVSPSLTMVARVAVALRTRPSTLL 88

Query: 82 K 82
          +
Sbjct: 89 R 89


>gi|15903845|ref|NP_359395.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae R6]
 gi|116516188|ref|YP_817208.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae D39]
 gi|15459488|gb|AAL00606.1| Transcriptional activator [Streptococcus pneumoniae R6]
 gi|116076764|gb|ABJ54484.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae D39]
          Length = 299

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +  G     +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|86138032|ref|ZP_01056607.1| probable transcriptional regulator [Roseobacter sp. MED193]
 gi|85825059|gb|EAQ45259.1| probable transcriptional regulator [Roseobacter sp. MED193]
          Length = 233

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S+    +R  F    +++R+  KLT K++   +G A S IS++E    +   D M+ LA 
Sbjct: 28 SEEFQDKRAAFGAMVQSLRRAQKLTLKQVSEASGLALSTISKIENSNLSPTYDVMLKLAA 87

Query: 72 TLDTPLWKLL 81
           LDT +  +L
Sbjct: 88 GLDTDIVSIL 97


>gi|125972885|ref|YP_001036795.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|256006006|ref|ZP_05430945.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|281417085|ref|ZP_06248105.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|125713110|gb|ABN51602.1| transcriptional regulator, XRE family [Clostridium thermocellum
          ATCC 27405]
 gi|255990029|gb|EEU00172.1| transcriptional regulator, XRE family [Clostridium thermocellum
          DSM 2360]
 gi|281408487|gb|EFB38745.1| transcriptional regulator, XRE family [Clostridium thermocellum
          JW20]
 gi|316940876|gb|ADU74910.1| helix-turn-helix domain protein [Clostridium thermocellum DSM
          1313]
          Length = 231

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +R+E +L+QK+I +  G  +  ++  E  K   + + +  LA   D  +  
Sbjct: 1  MAFAAMLKQLREEKRLSQKDIADYLGITRQAVASYELAKREPDYEVLKKLADYFDVSIDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 134

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++        +IRKE  +TQ E+  + G     +S+ E   S  ++ ++  LA  L   +
Sbjct: 2  KKQTLGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLSCPDVSSIPQLAEILGVSV 61

Query: 78 WKLLK 82
           +L++
Sbjct: 62 DELMQ 66


>gi|313112940|ref|ZP_07798585.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310624749|gb|EFQ08059.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 220

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R+E  +TQ E+  +       +S  E G    +I+ +  LA  L   L  L+
Sbjct: 6  FGAFLAQVRRERNMTQAELAQQLHVTDKAVSRWERGIGLPDINMLEPLADVLGLTLADLM 65


>gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 165

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+ + +++    G +  ++S++E G    + + +  LA  L      L
Sbjct: 14 LGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 72


>gi|227495164|ref|ZP_03925480.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
 gi|226831616|gb|EEH63999.1| transcriptional regulator [Actinomyces coleocanis DSM 15436]
          Length = 109

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R IR+    T +E+  +   +  ++SE+E G+   + + ++ +   L  P  
Sbjct: 12 REHIGEVLRQIRRAQGSTLREVSAKAQVSLGYLSEIERGQKEASSEMLLSICTALGVPQS 71

Query: 79 KLLK 82
           +L+
Sbjct: 72 LVLR 75


>gi|226310713|ref|YP_002770607.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226093661|dbj|BAH42103.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 203

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           ++     R  RK   LTQ+E+       +  IS  E   ST   D +  LA  LD     
Sbjct: 55  LMLSQRLRTARKTKGLTQEELAEHVCTTKGTISNYENNHSTPPNDMLRQLADVLDVTTDW 114

Query: 80  LL 81
           LL
Sbjct: 115 LL 116


>gi|326384044|ref|ZP_08205727.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326197204|gb|EGD54395.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 156

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R  AK++ +++  R G +  ++S++E G    + D +  +A  L      L
Sbjct: 28 GEFIRSQRLSAKVSLRQLAERAGVSNPYLSQIERGLRKPSADVLSQIAKGLRVSAEVL 85


>gi|324996056|gb|EGC27967.1| transcriptional regulator [Streptococcus sanguinis SK678]
          Length = 178

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 75  KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 132


>gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 204

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++         RKE  +TQ  +  + G +   IS+ ETGKS  +   M+ L   L   +
Sbjct: 2  DQIKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKSMPDTGIMLELCEHLKINV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 NELL 65


>gi|300908619|ref|ZP_07126082.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
 gi|300894026|gb|EFK87384.1| XRE family transcriptional regulator [Lactobacillus reuteri
          SD2112]
          Length = 207

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  R +   TQ+++  R   ++  IS  E  +S  +I  ++ ++      L  LL
Sbjct: 3  FADKMKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 401

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R       ++ RK    T K++    G ++  IS+ E GKST   + +I +   L  P
Sbjct: 15 RKFNGERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKSTPLFETLIKIVDKLKFP 72


>gi|297539296|ref|YP_003675065.1| XRE family transcriptional regulator [Methylotenera sp. 301]
 gi|297258643|gb|ADI30488.1| transcriptional regulator, XRE family [Methylotenera sp. 301]
          Length = 147

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N+   +R E   +QK++  +    Q +I+ +E G   I +  +  LA      + ++++
Sbjct: 86  NSLSKLRLERGWSQKQLAEKLNTKQPYIARIENGIDDIQLSTIKKLAKVFGLSIVEIIE 144


>gi|282866678|ref|ZP_06275719.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282558464|gb|EFB64025.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 87

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              +R         +R E   T  E+  R+G A+  + +LE G++   +     LAH  
Sbjct: 5  PPDPDRDALRVTLARLRNERGWTFDELAGRSGLARRTLIDLEHGRAAGTVTTWHALAHAF 64

Query: 74 DTPLWKLL 81
          D P+ +LL
Sbjct: 65 DVPIEQLL 72


>gi|268610943|ref|ZP_06144670.1| DNA-binding phage protein [Ruminococcus flavefaciens FD-1]
          Length = 91

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R    + Q E   + G  +  +S  E G    +ID +I +A T       L
Sbjct: 1  MFYERVKELRNSLGINQVEFSKKIGVTKQCVSNWENGYIQPSIDMLIKIAKTFSVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|264679510|ref|YP_003279417.1| XRE family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262210023|gb|ACY34121.1| transcriptional regulator, XRE family [Comamonas testosteroni
          CNB-2]
          Length = 265

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R  F  + R+ R+  +L+Q+ +      +   +S +ETG++  + + ++ LA  L  
Sbjct: 3  PGARAPFGEHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRLAERLSV 62

Query: 76 PLWK 79
          PL +
Sbjct: 63 PLRE 66


>gi|257887265|ref|ZP_05666918.1| predicted protein [Enterococcus faecium 1,141,733]
 gi|257823319|gb|EEV50251.1| predicted protein [Enterococcus faecium 1,141,733]
          Length = 130

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77
          F    + +R    L   ++  ++G + S IS  E G+     ++ +  L+  L   +
Sbjct: 3  FGEKLKKLRISRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSI 59


>gi|271966422|ref|YP_003340618.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509597|gb|ACZ87875.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 192

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+    T   + N TG   S +S LE GK    ++ ++ LA     PL  L+
Sbjct: 12 VGPRLRALRQARSATLAALANETGLTASTLSRLENGKLLPTLEQLLPLARAHGVPLDDLV 71


>gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876]
 gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876]
          Length = 144

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK+ KL+Q E+ +R GF++  ++  E G+   + D +  +A   +     L
Sbjct: 1  MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|227540308|ref|ZP_03970357.1| XRE family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33300]
 gi|227239844|gb|EEI89859.1| XRE family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33300]
          Length = 193

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  + IRK   +T +++ +R G ++  IS++E  ++  ++  +I +   L+  L +  K
Sbjct: 11 SRIKEIRKGKGITIQDLADRAGVSKGLISQVENNRTVPSLLVLINIIGALEIDLTEFFK 69


>gi|217969359|ref|YP_002354593.1| XRE family transcriptional regulator [Thauera sp. MZ1T]
 gi|217506686|gb|ACK53697.1| transcriptional regulator, XRE family [Thauera sp. MZ1T]
          Length = 99

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 1  MPRR--KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          MP+R  +R  P  +     E  I F    R  R    + Q+ + +  G  +S + ++E G
Sbjct: 1  MPKRSIQRGRPTGTTTYEAEPAIAFGAAVREERTSQGIAQETLAHMAGIERSHMGKIERG 60

Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82
          +    +  ++ +A  L      L+ 
Sbjct: 61 EHVPTLPLILKIARALKCSSAHLMT 85


>gi|254512804|ref|ZP_05124870.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221532803|gb|EEE35798.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 200

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R+ R+    T +E     G  +S +S++E   +  + D +  L   LD    +L 
Sbjct: 21 LGRSIRDARRAKGWTLEEAGRAAGIGRSTLSKIENNHTRPSFDIVRRLTQALDMSTPQLF 80


>gi|169832395|ref|YP_001695343.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6]
 gi|168994897|gb|ACA35509.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6]
          Length = 299

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +  G     +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQGLTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a]
 gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a]
          Length = 500

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 26/58 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++       R +R+E  ++Q E+    G + S+++++E     + +  ++ +      
Sbjct: 2  QKTFVGTRLRELREERAMSQVELARLLGISPSYLNQIEHNSRPLTVPVLLRITEAFGV 59


>gi|49082636|gb|AAT50718.1| PA4499 [synthetic construct]
          Length = 188

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+ AK T  ++ + +G   S++S+ E   + ++I ++  +A +L+ PL  L 
Sbjct: 7  GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65


>gi|315641313|ref|ZP_07896389.1| XRE family transcriptional regulator [Enterococcus italicus DSM
          15952]
 gi|315482886|gb|EFU73406.1| XRE family transcriptional regulator [Enterococcus italicus DSM
          15952]
          Length = 53

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 30/52 (57%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          M    N + +RK+AK  Q +     G +++++S+LE  + +++ID +  +A 
Sbjct: 1  MSIGENLKVLRKKAKKNQTKFAKDIGISRTYLSDLEHNRKSLSIDTIEKIAK 52


>gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 183

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RK  KLTQ++I  +    Q+ IS+ E G +    + +I L   L+T    LL
Sbjct: 3  NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTVPKNEKLIQLCEILETSSDYLL 60


>gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
           2075]
          Length = 432

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 11  LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                   R       + +R +  L+Q ++    G   S IS++E+     ++  +I +A
Sbjct: 242 DPQRRAASRFDLGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHIYPSLPALIKMA 301

Query: 71  HTLDTPLWKLL 81
             L   +    
Sbjct: 302 EVLSVEIASFF 312


>gi|295102573|emb|CBL00118.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii
          L2-6]
          Length = 138

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLW 78
          M+F    +  R EA LTQ E+  + G     I   E G    + +  M  +A  L+T   
Sbjct: 1  MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTMQKIADALNTTTE 60

Query: 79 KLL 81
           LL
Sbjct: 61 YLL 63


>gi|296102579|ref|YP_003612725.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295057038|gb|ADF61776.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 185

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|294678852|ref|YP_003579467.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
          1003]
 gi|294477672|gb|ADE87060.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
          1003]
          Length = 478

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++     + +R+   LTQ ++    G + S+I+ +E  +   ++  ++ LA   D  +
Sbjct: 6  EKLVIGQRLKVLRQSLGLTQAQMAAELGVSASYITLIEADQRPASVKLLMRLAEVYDLNI 65

Query: 78 WKL 80
           +L
Sbjct: 66 SEL 68


>gi|227524839|ref|ZP_03954888.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227087996|gb|EEI23308.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 89

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+         +       ++     + R+EA LTQ ++  R    QS I+ +E G   +
Sbjct: 14 PKFAEAYHADKEKSASALALY-----HTREEAGLTQADLAERANVPQSTIARIERGD-NV 67

Query: 62 NIDNMIILAHTLDT 75
            D +  +AH +  
Sbjct: 68 TFDKLAEIAHAMGK 81


>gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4]
 gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri
          MV-22]
 gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4]
 gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri
          MV-22]
          Length = 64

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK+  L+Q  +  R   A+  I+ +E  K   ++D  + LAH LDT L  L 
Sbjct: 2  NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 59


>gi|206895690|ref|YP_002247149.1| helix-turn-helix, putative [Coprothermobacter proteolyticus DSM
          5265]
 gi|206738307|gb|ACI17385.1| helix-turn-helix, putative [Coprothermobacter proteolyticus DSM
          5265]
          Length = 67

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  R+ A LTQ+E+ N     +  I  LE GK   ++   + +A  ++ PL ++ 
Sbjct: 4  FICNLKKYRQLAGLTQEELANMVHVRRETIVRLEAGKYNPSLKLAMDIAKAVNAPLEEIF 63


>gi|295838235|ref|ZP_06825168.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. SPB74]
 gi|197698209|gb|EDY45142.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. SPB74]
          Length = 291

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|55418008|ref|YP_133908.1| TrbA regulator protein [Plasmid pB3]
 gi|54969562|emb|CAG25998.1| TrbA regulator protein [Plasmid pB3]
          Length = 120

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|152975886|ref|YP_001375403.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152024638|gb|ABS22408.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
          391-98]
          Length = 64

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +++RK  K++Q E+ N    ++  I+ +E  K   ++     +A+ L+  + +L 
Sbjct: 3  NNIKSLRKVQKISQDELANLCNVSRQTINAIENNKYDPSLVLAFSIANYLNVKVDELF 60


>gi|10955210|ref|NP_044239.1| hypothetical protein R751p28 [Enterobacter aerogenes]
 gi|77993230|ref|YP_358820.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8]
 gi|84310686|ref|YP_447016.1| conjugal transfer protein TrbA [uncultured bacterium]
 gi|115345483|ref|YP_771668.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|466379|gb|AAA17042.1| TrbA [Plasmid R751]
 gi|1572547|gb|AAC64442.1| TrbA [Enterobacter aerogenes]
 gi|77733983|emb|CAI10747.1| DNA binding protein [IncP-1beta multiresistance plasmid pB8]
 gi|84094966|emb|CAJ15577.1| TrbA repressor protein [uncultured bacterium]
 gi|115286660|gb|ABI92134.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
          Length = 120

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|325832292|ref|ZP_08165291.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325486128|gb|EGC88582.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 129

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R  R    LT++ +    G  +  +  +E+G +   +D M  ++  L  PL +L+
Sbjct: 53  FGEAVRMQRAVCNLTKERLSLMVGINRLTLRRIESGDANPTLDVMYRISEGLGVPLSELI 112


>gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3]
 gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++R    ++Q+E+  R G   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFF 64


>gi|323706165|ref|ZP_08117733.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323534458|gb|EGB24241.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 118

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   LT+++     G +  +I  +E  +  +++   + +A +L      LL
Sbjct: 14 VGMRIRAERERIGLTREQFAEAVGVSAMYIGHIERAQRVMSLKTFVRIAKSLHVSTDYLL 73


>gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612]
 gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612]
          Length = 148

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   N+    RK   L+Q+E+  + G ++  IS+ ET ++  +I     +A      L +
Sbjct: 1  MTLGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQSKQMAQLYHLSLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|304385876|ref|ZP_07368220.1| XRE family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
 gi|304328380|gb|EFL95602.1| XRE family transcriptional regulator [Pediococcus acidilactici
          DSM 20284]
          Length = 196

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
               ++M      + +R++  LTQ E+ ++    +  IS  E GK+  NI  +  LA  
Sbjct: 2  KPEGVDQMSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAEL 61

Query: 73 LDTPLWKL 80
              + +L
Sbjct: 62 YGVSIDEL 69


>gi|269976576|ref|ZP_06183561.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mobiluncus mulieris 28-1]
 gi|269935377|gb|EEZ91926.1| toxin-antitoxin system, antitoxin component, Xre family
          [Mobiluncus mulieris 28-1]
          Length = 84

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
            ++  +  +   F    R  R+   LTQ+ + +  G  +  I+ LE+G  ++ +D  + 
Sbjct: 3  SVITRVVASDTEKFAQLVRFHRQAFGLTQQRLADMAGVTRPAITRLESGAPSVRLDTALK 62

Query: 69 LAHTLDTP 76
          +   L   
Sbjct: 63 VLDALGVE 70


>gi|268611917|ref|ZP_06145644.1| transcriptional regulator, XRE family protein [Ruminococcus
          flavefaciens FD-1]
          Length = 102

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    R IRK    +  ++   +G +Q  IS+LE   +   I+ +  L   +   L +  
Sbjct: 3  YGTRLREIRKAKGFSMYKLHKESGLSQGHISDLEKCINQPTIETLQKLLTPMGVTLAEFF 62


>gi|302549850|ref|ZP_07302192.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
 gi|302467468|gb|EFL30561.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
          Length = 190

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE ++T   +   TG + S +S LE+G    +++ ++ +A      L +L+
Sbjct: 10 VGPRLRQMRKEREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIARAHQVALDELV 69


>gi|228949224|ref|ZP_04111491.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228810450|gb|EEM56804.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 68

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++ ++  N  +  R E K++Q E+    G ++  IS +ETG+        ++L   LD 
Sbjct: 1  MKDELVLQNRLKVARAEKKISQGELAEMVGVSRQTISSIETGQFCPTAKLALVLCVALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|229029469|ref|ZP_04185551.1| Transcriptional regulator, Xre [Bacillus cereus AH1271]
 gi|228731822|gb|EEL82722.1| Transcriptional regulator, Xre [Bacillus cereus AH1271]
          Length = 404

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|160942173|ref|ZP_02089488.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC
          BAA-613]
 gi|158435064|gb|EDP12831.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC
          BAA-613]
          Length = 204

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LTQ+++  +   +++ IS+ E+GK   NI+++  ++      + +LL
Sbjct: 3  FNEKLQQLRIGKNLTQQQLAEQLYVSRTAISKWESGKGYPNIESLKCISRFFSITIDELL 62


>gi|154497828|ref|ZP_02036206.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC
          29799]
 gi|150273326|gb|EDN00471.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC
          29799]
          Length = 122

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  R+ A LTQ+ +         ++S +E G   +++  +  L   L   
Sbjct: 12 GARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQRLCSVLLVS 65


>gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVEFF 62


>gi|117918776|ref|YP_867968.1| XRE family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611108|gb|ABK46562.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3]
          Length = 191

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|110638814|ref|YP_679023.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110281495|gb|ABG59681.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 99

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +  R E  +TQ+E+  + G  +S+IS +E     + I  +  +   
Sbjct: 41 IQEARIEKGMTQEELAIKCGTTKSYISRIENNIKEVRISTLQKIVEL 87


>gi|297568975|ref|YP_003690319.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924890|gb|ADH85700.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 123

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 19  RMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R++   N  R  R+   ++ +E+ +    + S++S++ETG     ID +  +A  L   +
Sbjct: 60  RILDGENKIRVWREYRGMSARELASTAQISTSYLSQVETGSREGGIDTLKRIAAALRVSI 119

Query: 78  WKLL 81
             L+
Sbjct: 120 DDLV 123


>gi|256397637|ref|YP_003119201.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256363863|gb|ACU77360.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 321

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R+   LT  ++ +R G  ++ I  +E G+  +++ +  ++A      L  L+
Sbjct: 24 ELRRAEGLTLDDLADRAGLHRTSIGLIERGERLLSLTSAAMIASAFGMRLSDLI 77


>gi|255326129|ref|ZP_05367216.1| helix-turn-helix domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255296840|gb|EET76170.1| helix-turn-helix domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 74

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F    R +RK  K+TQ E+    G +   I ++E G    +I  ++ +A  L   L
Sbjct: 12 FGAQVRAVRKYEKITQMELAWMVGLSDKTIRDIERGLPGPSIGAVLKVAQELGIEL 67


>gi|253688262|ref|YP_003017452.1| putative phage repressor [Pectobacterium carotovorum subsp.
          carotovorum PC1]
 gi|251754840|gb|ACT12916.1| putative phage repressor [Pectobacterium carotovorum subsp.
          carotovorum PC1]
          Length = 244

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          +       +  R    L+QK + +  G +Q+ I ++E GK++     ++ L++ L   P 
Sbjct: 2  KTTLAERLKTARIAQGLSQKALGDLIGVSQAAIQKIEVGKASQTT-KIVELSNALHVRPE 60

Query: 78 W 78
          W
Sbjct: 61 W 61


>gi|229892445|gb|ACQ89867.1| VE07 [Enterococcus faecalis]
          Length = 433

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             R +R    L+Q++  ++  +++S++S +ETGK TIN   +  +  T 
Sbjct: 4  QEIRQLRNRLGLSQQQFADKLHWSKSYLSMIETGKRTINKTAIERINQTF 53


>gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
 gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 197

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+E  LTQ+++ +  G     +S+ E G    +I+ +  L+  L TP+  LL
Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETLL 65


>gi|258406011|ref|YP_003198753.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798238|gb|ACV69175.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 117

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R  R +  LTQ E+  +TG  QS IS +E GK  I  +    LA  L+ 
Sbjct: 62  LRGARNKEGLTQVELAEKTGIPQSHISSMENGKKEIGKERAKRLAEVLNI 111


>gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme
          DSM 15981]
 gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme
          DSM 15981]
          Length = 257

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+  L+Q+++    G  +  +S+ E G +T  +  ++ L+      + +L+
Sbjct: 9  FSEQLIKLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTTPELGKLVQLSDYFQLSIDELV 68


>gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM
          10507]
          Length = 145

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +RKE  L+Q E+  +    +  +S  ETG++  NI+ + +L+   D  +  LL
Sbjct: 7  ISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKLLSKLFDVSINTLL 62


>gi|212635362|ref|YP_002311887.1| Repressor of flagellae [Shewanella piezotolerans WP3]
 gi|212556846|gb|ACJ29300.1| Repressor of flagellae, putative [Shewanella piezotolerans WP3]
          Length = 116

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLW 78
          M    N +  RK   +T+ E+ +R+G + + +S +E G+ +  N++ ++ ++  L+T + 
Sbjct: 1  MTIGENIKLKRKSLGMTRSELIDRSGVSTAQLSRMERGEQNNPNLETLVAISTALNTSID 60

Query: 79 KLL 81
          +++
Sbjct: 61 EIV 63


>gi|187919377|ref|YP_001888408.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187717815|gb|ACD19038.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 183

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + IRK+  L+Q+E+  R G     IS +E  + + ++ ++  L   +   L +  
Sbjct: 5  VATRLQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEFF 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS]
 gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus
          pyogenes M1 GAS]
          Length = 248

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LT +++    G  +S IS+ E G  +  I  +  +A        K++
Sbjct: 7  FPAMVKELRLSKNLTMEQLAEEVGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMM 66


>gi|324994099|gb|EGC26013.1| transcriptional regulator [Streptococcus sanguinis SK678]
 gi|332366386|gb|EGJ44137.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 71

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|324991744|gb|EGC23676.1| transcriptional regulator [Streptococcus sanguinis SK353]
 gi|325686944|gb|EGD28968.1| transcriptional regulator [Streptococcus sanguinis SK72]
 gi|325688753|gb|EGD30762.1| transcriptional regulator [Streptococcus sanguinis SK115]
 gi|325697682|gb|EGD39567.1| transcriptional regulator [Streptococcus sanguinis SK160]
 gi|327459306|gb|EGF05652.1| transcriptional regulator [Streptococcus sanguinis SK1]
 gi|327462426|gb|EGF08751.1| transcriptional regulator [Streptococcus sanguinis SK1057]
 gi|332362960|gb|EGJ40749.1| transcriptional regulator [Streptococcus sanguinis SK49]
 gi|332364603|gb|EGJ42372.1| transcriptional regulator [Streptococcus sanguinis SK1059]
          Length = 71

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|302530038|ref|ZP_07282380.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302438933|gb|EFL10749.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 172

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
                 RK A L+Q+E+  R G ++  +S  E G+ +  +D +  L
Sbjct: 4  AELLTTARKAADLSQQELAERAGTSRPTLSAYERGRKSPTLDTVTRL 50


>gi|258654828|ref|YP_003203984.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258558053|gb|ACV80995.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 156

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      R  R+ A L  +++    G +  ++S++E G    +   +  +A +L    
Sbjct: 7  ESMSLGEMIRRQREMASLPMRQLAAMAGISNPYLSQIERGLRDPSDQVLNAIADSLQMSA 66

Query: 78 WKLLKP 83
            L  P
Sbjct: 67 DSLRPP 72


>gi|229017069|ref|ZP_04173988.1| Transcriptional regulator, Xre [Bacillus cereus AH1273]
 gi|229023250|ref|ZP_04179760.1| Transcriptional regulator, Xre [Bacillus cereus AH1272]
 gi|228738044|gb|EEL88530.1| Transcriptional regulator, Xre [Bacillus cereus AH1272]
 gi|228744242|gb|EEL94325.1| Transcriptional regulator, Xre [Bacillus cereus AH1273]
          Length = 404

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTELAG-SKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|212697015|ref|ZP_03305143.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212675985|gb|EEB35592.1| hypothetical protein ANHYDRO_01580 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 489

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK    +Q+ + + TG  ++ IS +E+     +ID +  LA  L   +  L 
Sbjct: 17 RKSKNFSQRNLSDLTGINRTMISRIESCDYVPSIDQLQALAEVLGFDIVDLF 68


>gi|149917149|ref|ZP_01905649.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149822065|gb|EDM81458.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 128

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++D    E   F  + R++RK   LTQ+ +  + G +   I  LE G  + ++  ++ L+
Sbjct: 1  MTDVYEVEGRRFGRHVRSLRKTRGLTQEALARKAGLSGDTIRRLEGGTFSPSLTTLVRLS 60

Query: 71 HTLDTPLWKLL 81
            L+  L  +L
Sbjct: 61 RGLELRLSTIL 71


>gi|149004582|ref|ZP_01829270.1| hypothetical protein CGSSp14BS69_01039 [Streptococcus pneumoniae
          SP14-BS69]
 gi|237650099|ref|ZP_04524351.1| hypothetical protein SpneC1_05127 [Streptococcus pneumoniae CCRI
          1974]
 gi|237822301|ref|ZP_04598146.1| hypothetical protein SpneC19_08349 [Streptococcus pneumoniae CCRI
          1974M2]
 gi|147757531|gb|EDK64557.1| hypothetical protein CGSSp14BS69_01039 [Streptococcus pneumoniae
          SP14-BS69]
          Length = 85

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  L QK+I     F  S  +++E G+  +  D ++ L+   D     LL
Sbjct: 3  RRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60


>gi|146319399|ref|YP_001199111.1| transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|146321603|ref|YP_001201314.1| transcriptional regulator [Streptococcus suis 98HAH33]
 gi|253752422|ref|YP_003025563.1| DNA-binding protein [Streptococcus suis SC84]
 gi|253754248|ref|YP_003027389.1| DNA-binding protein [Streptococcus suis P1/7]
 gi|253756182|ref|YP_003029322.1| DNA-binding protein [Streptococcus suis BM407]
 gi|145690205|gb|ABP90711.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
 gi|145692409|gb|ABP92914.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
 gi|251816711|emb|CAZ52353.1| putative DNA-binding protein [Streptococcus suis SC84]
 gi|251818646|emb|CAZ56481.1| putative DNA-binding protein [Streptococcus suis BM407]
 gi|251820494|emb|CAR47248.1| putative DNA-binding protein [Streptococcus suis P1/7]
 gi|292559027|gb|ADE32028.1| Predicted transcriptional regulator [Streptococcus suis GZ1]
 gi|319758828|gb|ADV70770.1| transcriptional regulator [Streptococcus suis JS14]
          Length = 62

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++ R    ++Q ++    G ++  I+ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLF 59


>gi|28209943|ref|NP_780887.1| transcriptional regulator [Clostridium tetani E88]
 gi|28202378|gb|AAO34824.1| predicted transcriptional regulator [Clostridium tetani E88]
          Length = 219

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             N +  R EA ++QK++  + G ++++I+E+ETGK  IN + +  +   L+  L
Sbjct: 4  VGRNIKTYRLEANMSQKQLGKKIGVSENFINEIETGKRIINENLIDRIGKILNKDL 59


>gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 101

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 35/64 (54%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           + ++ ++     +  RKE  +T  ++  + G +Q  +S  E G + IN+ +++ +A  L
Sbjct: 2  KMKQDHLLVGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASIL 61

Query: 74 DTPL 77
          +TP+
Sbjct: 62 ETPI 65


>gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 182

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 4  GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|257141046|ref|ZP_05589308.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 193

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 17 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 70


>gi|257784825|ref|YP_003180042.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
 gi|257473332|gb|ACV51451.1| transcriptional regulator, XRE family [Atopobium parvulum DSM
          20469]
          Length = 75

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R++RK+ +LTQ+ +  R    Q+++S++E+G+  + +  +   A  L     +L
Sbjct: 8  LVGQCLRDLRKKQRLTQETVAERLAGDQAFVSKVESGERGVKLGEVYAFAEALGIEASEL 67

Query: 81 LK 82
          ++
Sbjct: 68 IE 69


>gi|209964814|ref|YP_002297729.1| DNA-binding protein, putative [Rhodospirillum centenum SW]
 gi|209958280|gb|ACI98916.1| DNA-binding protein, putative [Rhodospirillum centenum SW]
          Length = 232

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPRR ++    +   + E  +  +  R  R    ++Q ++    G     + + E G + 
Sbjct: 1  MPRRTKNAAVAALESVIESHV-ASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNR 59

Query: 61 INIDNMIILAHTLDTPL 77
          +++  +  LA  LD PL
Sbjct: 60 VSVGKLYRLAEILDVPL 76


>gi|134302287|ref|YP_001122256.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|134050064|gb|ABO47135.1| helix-turn-helix DNA binding protein [Francisella tularensis
          subsp. tularensis WY96-3418]
          Length = 71

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  RK+  LTQ ++   +G    +I E+E GK+T +I  +I LA +L 
Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSLG 63


>gi|56708158|ref|YP_170054.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89256451|ref|YP_513813.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica LVS]
 gi|110670629|ref|YP_667186.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115314886|ref|YP_763609.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica OSU18]
 gi|156502554|ref|YP_001428619.1| helix-turn-helix domain-containing protein [Francisella
          tularensis subsp. holarctica FTNF002-00]
 gi|167010327|ref|ZP_02275258.1| hypothetical protein Ftulh_06310 [Francisella tularensis subsp.
          holarctica FSC200]
 gi|187931886|ref|YP_001891871.1| transcriptional regulator [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224457260|ref|ZP_03665733.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254367787|ref|ZP_04983808.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica 257]
 gi|254370643|ref|ZP_04986648.1| hypothetical protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|254874966|ref|ZP_05247676.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|290953909|ref|ZP_06558530.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica URFT1]
 gi|295312709|ref|ZP_06803452.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica URFT1]
 gi|56604650|emb|CAG45708.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|89144282|emb|CAJ79565.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica LVS]
 gi|110320962|emb|CAL09091.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis FSC198]
 gi|115129785|gb|ABI82972.1| possible transcriptional regulator [Francisella tularensis subsp.
          holarctica OSU18]
 gi|134253598|gb|EBA52692.1| transcriptional regulator [Francisella tularensis subsp.
          holarctica 257]
 gi|151568886|gb|EDN34540.1| hypothetical protein FTBG_00435 [Francisella tularensis subsp.
          tularensis FSC033]
 gi|156253157|gb|ABU61663.1| helix-turn-helix domain protein [Francisella tularensis subsp.
          holarctica FTNF002-00]
 gi|187712795|gb|ACD31092.1| transcriptional regulator [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840965|gb|EET19401.1| transcriptional regulator [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|282159373|gb|ADA78764.1| hypothetical protein NE061598_06205 [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 75

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  RK+  LTQ ++   +G    +I E+E GK+T +I  +I LA +L 
Sbjct: 15 IRKARKKQGLTQADLSGISGLGTRFIGEVENGKNTAHIGKVIQLASSLG 63


>gi|33593633|ref|NP_881277.1| putative transcriptional regulatory protein [Bordetella pertussis
          Tohama I]
 gi|33563706|emb|CAE42939.1| putative transcriptional regulatory protein [Bordetella pertussis
          Tohama I]
 gi|332383038|gb|AEE67885.1| putative transcriptional regulatory protein [Bordetella pertussis
          CS]
          Length = 206

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P      P +      +        R +RK  K T   +  + G  + ++S LE G+ + 
Sbjct: 12 PPMTAKSPPVPAPSPEQ---IGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSA 68

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          ++  +  +A  L + L  LL
Sbjct: 69 SVGTLHTVAGALGSSLSALL 88


>gi|27377722|ref|NP_769251.1| hypothetical protein blr2611 [Bradyrhizobium japonicum USDA 110]
 gi|27350867|dbj|BAC47876.1| blr2611 [Bradyrhizobium japonicum USDA 110]
          Length = 110

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P      P+   A L E     +  ++ R    L+++E+  R+G ++ +I+++E GK  
Sbjct: 33  LPGSCAVPPYSETAFLAE---LGDRLKSSRTRCDLSRRELARRSGISERYIAQIEAGKGN 89

Query: 61  INIDNMIILAHTLD 74
           ++I  ++ LA  + 
Sbjct: 90  VSIVLLLRLASAIH 103


>gi|84686686|ref|ZP_01014578.1| hypothetical protein 1099457000242_RB2654_00590 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84665360|gb|EAQ11838.1| hypothetical protein RB2654_00590 [Rhodobacterales bacterium
          HTCC2654]
          Length = 199

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            + +  R+   ++Q+ +  + G  QS IS++E G   + + +++ LA  LD  L
Sbjct: 9  AESLKAARERKGISQRALSAKAGVPQSHISKIENGAVDLRLSSLVELARVLDLEL 63


>gi|113968668|ref|YP_732461.1| XRE family transcriptional regulator [Shewanella sp. MR-4]
 gi|113883352|gb|ABI37404.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella sp. MR-4]
          Length = 191

 Score = 48.8 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +T L   L
Sbjct: 8  LAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNTSLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC
          49176]
 gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC
          49176]
          Length = 116

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R++  LTQ E+ N  G   + IS  E+ ++  + D +I L+   D     LL
Sbjct: 3  FHLRLKQLRQKKGLTQGELANILGLKPTAISNYESNRNEPSFDKLIALSKEFDVTCDYLL 62


>gi|228918792|ref|ZP_04082190.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228840864|gb|EEM86108.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 108

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+ +    ++S I   E  +   + + +I LA   +     
Sbjct: 2  KTFGNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRLADYFNVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium
          MS024-3C]
 gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium
          MS024-3C]
          Length = 64

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ + +R   +LTQ+++ ++ G ++  I+ +E GK   ++     LAH   TP+  +  
Sbjct: 3  NSIKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFDPSLPLAFKLAHLFHTPIEGIFT 61


>gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus HN001]
 gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus HN001]
          Length = 176

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK + L+Q E+    G ++  IS+ E   +  ++  +      L      L
Sbjct: 1  MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|167767203|ref|ZP_02439256.1| hypothetical protein CLOSS21_01722 [Clostridium sp. SS2/1]
 gi|317498205|ref|ZP_07956506.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|167711178|gb|EDS21757.1| hypothetical protein CLOSS21_01722 [Clostridium sp. SS2/1]
 gi|316894560|gb|EFV16741.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 187

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IR    ++   +  +TG ++S ++++E G +  ++  +  +   L     +L+
Sbjct: 11 VAVNLKRIRTSKGMSLDVLSEQTGVSKSMLAQIEKGTANPSLGVLGKITSGLRIEFQELI 70


>gi|157324993|ref|YP_001468419.1| gp34 [Listeria phage A500]
 gi|66733001|gb|AAY52820.1| gp34 [Listeria phage A500]
          Length = 73

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+  R +A LTQ+E+    G A+  I +LE G+   +I+  + ++  LD+ + ++ 
Sbjct: 5  FKEKRNKAGLTQRELGIAVGLAEISIRKLENGERDPSINTAVKISKALDSNMEEIF 60


>gi|77412889|ref|ZP_00789093.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|77161029|gb|EAO72136.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 299

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|325261320|ref|ZP_08128058.1| DNA-binding protein [Clostridium sp. D5]
 gi|324032774|gb|EGB94051.1| DNA-binding protein [Clostridium sp. D5]
          Length = 185

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 34/59 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              ++ R++  L+ +E+   +  A S IS++ETGK++ N+  +  +  +LD P++ L 
Sbjct: 7  GKTIKDKRQDMNLSLRELSAISQVAGSTISQIETGKTSPNLLTLKAICDSLDIPVFSLF 65


>gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 114

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 35/60 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+E+ ++ G ++  +S+ E+ +ST +++ +II++         +LK
Sbjct: 4  ADRIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILK 63


>gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
          Length = 147

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N+R++  LTQ+++  R    +  +S  ETG++  N D + +L+   D  +  LL
Sbjct: 7  LKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKLLSRVFDVSINTLL 62


>gi|295697361|ref|YP_003590599.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295412963|gb|ADG07455.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 143

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F    + +R E   T +++  R+G + S IS LE G     +    + LA  L+ PL   
Sbjct: 5  FGVKLKQLRTERGWTLEQLSARSGLSISHISSLERGTRMKPSFQVAVRLARALEVPLATF 64

Query: 81 LK 82
          L+
Sbjct: 65 LE 66


>gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 168

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK+  LTQ++       +   +S  E G +  ++D +I ++   +  L +LL
Sbjct: 7  GEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNNLPDLDILIEISDYYEIDLRELL 65


>gi|289422564|ref|ZP_06424407.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
 gi|289157136|gb|EFD05758.1| conserved domain protein [Peptostreptococcus anaerobius 653-L]
          Length = 69

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++IRKE  L+Q ++ N  G +++ IS +ETG+        +ILA  L+     + 
Sbjct: 9  NRLKDIRKELGLSQTDLANMVGVSRNTISSIETGQFNPTAKLALILAIALEKKFEDIF 66


>gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium
          intracellulare ATCC 13950]
          Length = 477

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R +R+E  LTQ  +    G + S++++LE  +  I +  ++ L    D P
Sbjct: 10 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLP 63


>gi|167768912|ref|ZP_02440965.1| hypothetical protein ANACOL_00229 [Anaerotruncus colihominis DSM
          17241]
 gi|167668552|gb|EDS12682.1| hypothetical protein ANACOL_00229 [Anaerotruncus colihominis DSM
          17241]
          Length = 72

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+I   N    R E +++Q+E+  +   +    +E+E  +   N++ +  +      P  
Sbjct: 7  RVILACNLLEFRAEKRISQEEMAFQIDLSVKSYAEIERAEVHTNLEILDRIGQVTGMPPA 66

Query: 79 KLLKP 83
          +LL P
Sbjct: 67 QLLTP 71


>gi|149190536|ref|ZP_01868806.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1]
 gi|148835660|gb|EDL52627.1| hypothetical protein VSAK1_13811 [Vibrio shilonii AK1]
          Length = 106

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R  A +TQ+++  +TG + S I  +E G  +I++D+       L+     +L
Sbjct: 11 LRRFRDLAGITQEQMAVKTGISLSTIKRIERGVRSISLDDYHKYLDVLELSHIDVL 66


>gi|327441616|dbj|BAK17981.1| predicted transcriptional regulator [Solibacillus silvestris
          StLB046]
          Length = 260

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RKE + +Q+ +  +   ++  IS+ E G+     + ++++ +  +  +  LL
Sbjct: 3  FGEKLFKLRKEKEYSQEALAEKLNTSRQAISKWENGQGFPETEKILMIGNIFEVSIDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|326330368|ref|ZP_08196678.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
          Broad-1]
 gi|325951905|gb|EGD43935.1| transcriptional regulator, XRE family [Nocardioidaceae bacterium
          Broad-1]
          Length = 248

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  R+ A L+Q E+  + G +Q+ +S  E G  +  +     + H     L
Sbjct: 32 LQAARRVAGLSQAELAEQAGTSQATLSAYERGAKSPALKVAERILHATGLEL 83


>gi|307704502|ref|ZP_07641410.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307621915|gb|EFO00944.1| helix-turn-helix family protein [Streptococcus mitis SK597]
          Length = 116

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ ++       QS   + E GK+ ++++N  IL+      +  LL
Sbjct: 3  NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSLENAQILSEYFGVSIPYLL 60


>gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 313

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R +R+E  +TQ+++    G     +S+ E  ++T +I  +  LA+  D     
Sbjct: 2  MTIGSTIRQLRQEQDITQEQLAEALGITSRAVSQWECDRTTPDISQLPALANFFDVTTDH 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|302391895|ref|YP_003827715.1| XRE family transcriptional regulator [Acetohalobium arabaticum
          DSM 5501]
 gi|302203972|gb|ADL12650.1| transcriptional regulator, XRE family [Acetohalobium arabaticum
          DSM 5501]
          Length = 184

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                IRK+   +  ++   T  ++S + ++E G S   +  +  +A  L+  
Sbjct: 9  GTKLHQIRKKKGYSLSKLEEVTEVSKSMLGQIERGTSNPTVKTLWKIAKGLNVS 62


>gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 119

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R +RKE KLTQ ++       +S I   E G    +   +  LA   +  +  LL
Sbjct: 9  GNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENGLREPSAGTIAYLAKYFNVSVDYLL 67


>gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 111

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +++R+E  L+Q+ + ++   +Q  I + E   +  NID +  +A   D  +  L+
Sbjct: 2  NRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLI 59


>gi|293399779|ref|ZP_06643925.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291306179|gb|EFE47422.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 65

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    +TQKE+    G  +  ++ +E G    +I   I +   LD  L  L 
Sbjct: 6  RIKAARAAKDMTQKELAECVGVTRQTMNAIEKGDYNSSIRLCIAICKALDKTLNDLF 62


>gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601]
 gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601]
          Length = 111

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R  R+E   +Q+++      ++  +S  E G    + D +  LA      +     
Sbjct: 8  GNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKSMDDFFP 67

Query: 83 P 83
          P
Sbjct: 68 P 68


>gi|160934666|ref|ZP_02082052.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753]
 gi|156866119|gb|EDO59491.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753]
          Length = 124

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    + +RK+ K+TQK++ +  G     IS  ETG    ++  +I LA   D  + 
Sbjct: 2  KNLFGAILQELRKDHKITQKDLADILGVTSKTISNYETGSQFPDLLIIIKLAEYFDVNMD 61

Query: 79 KL 80
           L
Sbjct: 62 YL 63


>gi|126654396|ref|ZP_01726142.1| predicted transcription regulator, containing DNA-binding HTH
          domain [Bacillus sp. B14905]
 gi|126589164|gb|EAZ83345.1| predicted transcription regulator, containing DNA-binding HTH
          domain [Bacillus sp. B14905]
          Length = 68

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N  R +RK  K+TQ+++    G ++  I  +E+GK   +++    ++   +
Sbjct: 3  NRIRELRKSKKITQEDLSKVVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53


>gi|86739175|ref|YP_479575.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566037|gb|ABD09846.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 325

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           PR    E     A L  R +  +  R+ R  A+++ +++  + G +  ++S++E G    
Sbjct: 53  PRPPAKEAFDPVAALNVRDL-GDFIRDQRHSAQISLRQLAKQAGVSNPYLSQIERGLRRP 111

Query: 62  NIDNMIILAHTLDTPLWKL 80
           + + +  +A  L      L
Sbjct: 112 SAEILQQIAKALRISAEVL 130


>gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus
          HTCC2516]
 gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus
          HTCC2516]
          Length = 202

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RK   +T +++    G +  +IS+ E   +  ++ ++  +A  L   L  +L
Sbjct: 17 GAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSLRKIAQVLGVSLQDIL 75


>gi|315657039|ref|ZP_07909924.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492431|gb|EFU82037.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 179

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           R  P    +    R       R +R+   LT +++  +   +  ++SE+E G+   + + 
Sbjct: 71  RIPPVAKPSTPVLRHELGEVLRQLRQTRGLTLRDVSAKARVSLGYLSEVERGQKEASSEL 130

Query: 66  MIILAHTLDTP 76
           +  + + L+ P
Sbjct: 131 LASICYALEAP 141


>gi|313890139|ref|ZP_07823774.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313121500|gb|EFR44604.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
          Length = 168

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + ++KE  LTQ E+       QS   + E GK+ ++++N  IL+         LL
Sbjct: 3  NRLKELQKEKGLTQAELAQVINTNQSQYGKYENGKTNLSLENAKILSDYFGVSPAYLL 60


>gi|313899139|ref|ZP_07832664.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956079|gb|EFR37722.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 65

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    LTQ+++  +    +  I+ +E G    +I+  I +   L   L  L 
Sbjct: 6  KLKAARAAMDLTQEQLAEKVSVTRQTINAIEKGDYNPSINLCITICRVLGKTLNDLF 62


>gi|311108474|ref|YP_003981327.1| hypothetical protein AXYL_05312 [Achromobacter xylosoxidans A8]
 gi|310763163|gb|ADP18612.1| helix-turn-helix family protein 12 [Achromobacter xylosoxidans
          A8]
          Length = 190

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R I     + +R+E   +  E+  R G +++ +S LE  + +     +  L       +
Sbjct: 12 DRRIAGR-LKALRQERGWSLDELAGRAGLSRATLSRLENAEVSPTASALGKLCGAYGLTM 70

Query: 78 WKLLK 82
           +L++
Sbjct: 71 SRLMR 75


>gi|300869668|ref|YP_003784539.1| putative transcriptional regulator [Brachyspira pilosicoli
          95/1000]
 gi|300687367|gb|ADK30038.1| putative transcriptional regulator [Brachyspira pilosicoli
          95/1000]
          Length = 141

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +RK    T   I +    +  ++  +E GK  I+I N+  +A  L+ P+  LL
Sbjct: 39 GSRIRIVRKSQNRTISYIADMAKISPKYLQGVEVGKRNISITNLNKIAKVLNIPISLLL 97


>gi|298229344|ref|ZP_06963025.1| Tn5251 transcriptional regulator Cro/CI family protein
          [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255907|ref|ZP_06979493.1| Tn5251 transcriptional regulator Cro/CI family protein
          [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503697|ref|YP_003725637.1| replication initiation protein [Streptococcus pneumoniae
          TCH8431/19A]
 gi|298239292|gb|ADI70423.1| replication initiation protein [Streptococcus pneumoniae
          TCH8431/19A]
          Length = 420

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
             +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QQLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLFEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|184201643|ref|YP_001855850.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201]
 gi|183581873|dbj|BAG30344.1| putative Xre family DNA-binding protein [Kocuria rhizophila
          DC2201]
          Length = 65

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  R+EA LTQK++ + +G ++  +  +ETG+    +  ++  A  L 
Sbjct: 11 IRRARREAGLTQKDLADLSGVSERTVRAIETGRGNPTVAALVATAGVLG 59


>gi|154507559|ref|ZP_02043201.1| hypothetical protein ACTODO_00038 [Actinomyces odontolyticus ATCC
          17982]
 gi|153797193|gb|EDN79613.1| hypothetical protein ACTODO_00038 [Actinomyces odontolyticus ATCC
          17982]
          Length = 101

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 30/50 (60%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          E  L+Q+++  RT    S+I ++E G+  +++ +++ +AH  DT    L+
Sbjct: 47 EEPLSQEKLAERTTLHWSYIGQVERGQRNLSLHSILRIAHAQDTDAGGLV 96


>gi|148272408|ref|YP_001221969.1| Cro/CI family transcriptional regulator [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
 gi|147830338|emb|CAN01272.1| putative transcriptional regulator, Cro/CI family [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 209

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R++R+    +   +  R   + S +S +ETG   I +D ++ +A  L+T L  L
Sbjct: 10 LVRQRIRSLREARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIAQALETSLDAL 69

Query: 81 LK 82
          ++
Sbjct: 70 IE 71


>gi|330943461|gb|EGH45807.1| DNA-binding protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 151

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ + +  + +R     +Q+++ +     +S+IS LE G+ ++ +D    LA  L+    
Sbjct: 4  RIAYGSALKFLRARQDSSQEDLGHA--IDRSYISRLERGERSVTLDVSHSLAEALEVDPL 61

Query: 79 KLL 81
           LL
Sbjct: 62 TLL 64


>gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM
          17132]
 gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM
          17132]
          Length = 255

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N + +R    LTQ+++    G  +  +   E  ++T  +D +  LA      + +L+
Sbjct: 6  ENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRATPPLDKLNRLASLFGVSMDQLI 63


>gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 103

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               + +RK++ L+  ++ N TG +  +ISELE    + + + ++ +   L+ 
Sbjct: 6  LGKRIKELRKQSGLSTTKLSNLTGISSGYISELENNLKSPSAEILLKIIDALNI 59


>gi|291541833|emb|CBL14943.1| Helix-turn-helix [Ruminococcus bromii L2-63]
          Length = 74

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNR-----TGFAQSWISELETGKSTINIDNMIILAHTLD 74
           I   N R IR+   +TQ++   +         +S ++++E G+  I ID + ++   L+
Sbjct: 7  KIVGGNIRKIRESKNITQEQFAAKLQLMGCDITRSAVAKIEVGQRHIYIDELKLIKDILE 66

Query: 75 TPLWKLL 81
          T   +L+
Sbjct: 67 TTYDELI 73


>gi|255323002|ref|ZP_05364138.1| putative ankyrin repeat protein [Campylobacter showae RM3277]
 gi|255299864|gb|EET79145.1| putative ankyrin repeat protein [Campylobacter showae RM3277]
          Length = 412

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N ++ R+   + Q+E+ ++    +  IS  E  KS  +   ++ LA        +LL
Sbjct: 7  AKNIKDAREGINMLQQELADKLNITRPVISNWENAKSEPSSTQLLKLADIFGVSADRLL 65


>gi|218893591|ref|YP_002442460.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|218773819|emb|CAW29633.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 187

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+ AK T  ++ + +G   S++S+ E   + ++I ++  +A +L+ PL  L 
Sbjct: 7  GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65


>gi|254382154|ref|ZP_04997515.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194341060|gb|EDX22026.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 269

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                      R  R    ++Q E+  R G +   IS +ETG++  + + ++ LA  LD
Sbjct: 2  TPTTTSSVGALLRTWRGRRGISQLELAGRAGSSSRHISFVETGRARPSEELLLRLADQLD 61

Query: 75 TPLWK 79
           P+ +
Sbjct: 62 VPVRE 66


>gi|189424198|ref|YP_001951375.1| XRE family plasmid maintenance system antidote protein [Geobacter
           lovleyi SZ]
 gi|189420457|gb|ACD94855.1| plasmid maintenance system antidote protein, XRE family [Geobacter
           lovleyi SZ]
          Length = 114

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 10  HLSDAILRERMIF--------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
             +D  +  R  F               R    +TQ ++   TG  Q  ISE+E GK  I
Sbjct: 35  QEADDSIPWREAFPEFAGNEAGTTLSGFRHREGMTQTQLAEATGIPQRHISEMENGKRII 94

Query: 62  NIDNMIILAHTLDTPLWKLL 81
            I +   LA  L     +LL
Sbjct: 95  GIVSAKRLAEALHCDYRRLL 114


>gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor
          A3(2)]
 gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24]
 gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24]
 gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces
          coelicolor A3(2)]
 gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24]
          Length = 509

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 133

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++        ++RK   +TQ E+  + G     +S+ E   S  +I+ +  LA   DT +
Sbjct: 2  KKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSV 61

Query: 78 WKLLK 82
           +L++
Sbjct: 62 DELMQ 66


>gi|282861650|ref|ZP_06270714.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282563466|gb|EFB69004.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 278

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          ++D    S      R  F    R+ R+E   TQ+E+  + G++ + +S +ETG+    + 
Sbjct: 3  RKDLNPDSSP----RAAFGARLRSAREERGWTQEELGEQVGYSGTHLSSVETGRKLPTLR 58

Query: 65 NMIILAHTLDT 75
           +  L      
Sbjct: 59 LVRALDRVFGK 69


>gi|228920493|ref|ZP_04083838.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228839123|gb|EEM84419.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 404

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+  +  LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 145

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK  KL+Q ++ +R GF++  ++  E G+   + D +  +A   +     L
Sbjct: 1  MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|311740707|ref|ZP_07714534.1| XRE family transcriptional regulator [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311304227|gb|EFQ80303.1| XRE family transcriptional regulator [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 69

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+  +L+Q E+  + G ++  I+ +E G  + ++   + + H L   + ++ 
Sbjct: 8  VRKWRRWVELSQAELAEKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIF 63


>gi|154484438|ref|ZP_02026886.1| hypothetical protein EUBVEN_02151 [Eubacterium ventriosum ATCC
          27560]
 gi|149734915|gb|EDM50832.1| hypothetical protein EUBVEN_02151 [Eubacterium ventriosum ATCC
          27560]
          Length = 108

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R +R E KL+  E+ +    ++S I +LE G   + ++ +   A   +     +L
Sbjct: 9  GVNLRQLRIENKLSPGEVSDIVDKSESHIMQLERGSRNLTVEMLCKFADVYNADPNTIL 67


>gi|148800315|gb|ABR12880.1| HipB2 [Mesorhizobium sp. CJ1]
          Length = 100

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 1  MPRRKRDEPH--------LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWIS 52
          MPR K+            L +      + F +    IR+   LTQ++    TG  +  ++
Sbjct: 1  MPRWKKPSKAEISTLRALLREKAEAGELRFPDAVAEIRRSLGLTQEQFAEITGTTKRQVA 60

Query: 53 ELETGKSTINIDNMIILAHTLDTPL 77
          E+ETGK+   ++ +  +A      L
Sbjct: 61 EIETGKANPTVETLQRIAGLFGFSL 85


>gi|157371454|ref|YP_001479443.1| DNA-binding transcriptional repressor PuuR [Serratia
          proteamaculans 568]
 gi|157323218|gb|ABV42315.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 185

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                IR +  L+Q+ +   +G   S IS +E  K +  I  +  L       L
Sbjct: 9  GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63


>gi|125974945|ref|YP_001038855.1| XRE family transcriptional regulator [Clostridium thermocellum
          ATCC 27405]
 gi|125715170|gb|ABN53662.1| transcriptional regulator, XRE family [Clostridium thermocellum
          ATCC 27405]
          Length = 142

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  L+QK++ +  G  ++  ++ ETGKS  +   +  LA      +  LL
Sbjct: 3  FNEILRQLRTEKNLSQKDVADAIGVDRTTYTKYETGKSQPDFVTIQKLAEFYSVSVDYLL 62


>gi|332358032|gb|EGJ35865.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1056]
          Length = 62

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|302562689|ref|ZP_07315031.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
 gi|302480307|gb|EFL43400.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
          Length = 277

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R   +L+Q ++      +   +S +ETGKS  + D ++ LA  LD PL +
Sbjct: 4  HTVGELLRQWRHRRRLSQLDLAIAADVSARHVSLVETGKSRPSADMVLRLADQLDVPLRE 63


>gi|300786099|ref|YP_003766390.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299795613|gb|ADJ45988.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 197

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 39/71 (54%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++DAI +         + +R + ++T  ++   TG ++S +S LE+G+   +++ ++ +A
Sbjct: 1  MTDAITQALAEVGPRLKRVRTQRRVTLADLSAATGISKSTLSRLESGQRKPSLELLLPIA 60

Query: 71 HTLDTPLWKLL 81
               PL +L+
Sbjct: 61 QAHQVPLDELV 71


>gi|258540564|ref|YP_003175063.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc
          705]
 gi|257152240|emb|CAR91212.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc
          705]
          Length = 215

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  +  R++  LTQ ++  +   +   IS  E G+S  +I  ++ ++      L +
Sbjct: 1  MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB78]
 gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SA3_actG]
 gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SA3_actF]
 gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp.
          Tu6071]
 gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB78]
 gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp.
          Tu6071]
          Length = 509

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    +Q ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|254518453|ref|ZP_05130509.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
 gi|226912202|gb|EEH97403.1| DNA-binding protein [Clostridium sp. 7_2_43FAA]
          Length = 115

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    R++R E  +TQ+++ +  G  ++ IS+ E  K   + D    LA      L  
Sbjct: 2  QSFGERLRSLRLEKDMTQEDVASYFGLHKTRISQYELNKRQADDDMKKKLAEFFGVSLDY 61

Query: 80 LL 81
          L+
Sbjct: 62 LM 63


>gi|199599444|ref|ZP_03212837.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus HN001]
 gi|199589656|gb|EDY97769.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus HN001]
          Length = 216

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  +  R++  LTQ ++  +   +   IS  E G+S  +I  ++ ++      L +
Sbjct: 1  MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|197302440|ref|ZP_03167495.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC
          29176]
 gi|197298338|gb|EDY32883.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC
          29176]
          Length = 130

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N   +R+E   TQK++ ++        S  ETG    NID +  L+      + +LL
Sbjct: 12 LAKNLLQLRQEHHYTQKQLGDKLNITHQAYSYYETGHRDPNIDMLTKLSALYGFSIEQLL 71

Query: 82 K 82
           
Sbjct: 72 T 72


>gi|195867537|ref|ZP_03079540.1| transcriptional regulator, Cro/CI family [Ureaplasma urealyticum
          serovar 9 str. ATCC 33175]
 gi|195660781|gb|EDX54035.1| transcriptional regulator, Cro/CI family [Ureaplasma urealyticum
          serovar 9 str. ATCC 33175]
          Length = 425

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 37 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 96

Query: 79 KLL 81
           L 
Sbjct: 97 MLF 99


>gi|23664437|gb|AAN39374.1| regulator [Azoarcus evansii]
          Length = 300

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR    +T+K +    G ++  ++ LE G   ++I  +  +A  L+  L +LL
Sbjct: 29 LGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEGGDGNVSIVLLHNIARALNVSLIELL 88

Query: 82 KP 83
           P
Sbjct: 89 AP 90


>gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H]
 gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H]
          Length = 203

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R +R+ A L+Q+++ ++ G ++S ++  ETG+S     ++  LA  L      LL
Sbjct: 83  LGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRSGHVGKHLGSLAQVLGVEPEVLL 142

Query: 82  K 82
            
Sbjct: 143 T 143


>gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas
          brassicacearum subsp. brassicacearum NFM421]
          Length = 182

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|323700205|ref|ZP_08112117.1| helix-turn-helix domain protein [Desulfovibrio sp. ND132]
 gi|323460137|gb|EGB16002.1| helix-turn-helix domain protein [Desulfovibrio desulfuricans
          ND132]
          Length = 294

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R    LT + +  RTG +++ I   E+G+  I +D +  +A  L   L  LL
Sbjct: 11 LGERLRAYRIGKNLTPENVAQRTGISRAAIYRYESGQ-PIRVDVLGKIADLLQVSLESLL 69


>gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM
          12885]
 gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM
          12885]
          Length = 131

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  R +R+   LTQ+E+    G ++  I   E G+   ++  +  LAH L T +  
Sbjct: 1  MQFADRLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISY 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|297200365|ref|ZP_06917762.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|197709485|gb|EDY53519.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 289

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    +  
Sbjct: 9  VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68


>gi|49482914|ref|YP_040138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|258422580|ref|ZP_05685487.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|282903282|ref|ZP_06311173.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160]
 gi|282905066|ref|ZP_06312924.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908042|ref|ZP_06315873.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282921517|ref|ZP_06329235.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427]
 gi|283957486|ref|ZP_06374939.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|295427234|ref|ZP_06819869.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590417|ref|ZP_06949056.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          MN8]
 gi|49241043|emb|CAG39718.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|257847232|gb|EEV71239.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|270055331|gb|ACZ58824.1| hypothetical protein SAP033A_008 [Staphylococcus aureus]
 gi|270300061|gb|ACZ68867.1| hypothetical protein SAP076A_042 [Staphylococcus aureus]
 gi|270300067|gb|ACZ68873.1| hypothetical protein SAP077A_006 [Staphylococcus aureus]
 gi|270300132|gb|ACZ68938.1| hypothetical protein SAP078A_013 [Staphylococcus aureus]
 gi|270300177|gb|ACZ68983.1| hypothetical protein SAP054A_013 [Staphylococcus aureus]
 gi|270300380|gb|ACZ69186.1| hypothetical protein SAP067A_013 [Staphylococcus aureus]
 gi|270300493|gb|ACZ69299.1| hypothetical protein SAP075A_013 [Staphylococcus aureus]
 gi|281334480|gb|ADA61564.1| hypothetical protein SAP019A_018 [Staphylococcus aureus]
 gi|282166762|gb|ADA80778.1| hypothetical protein SAP102A_031 [Staphylococcus aureus]
 gi|282315932|gb|EFB46316.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427]
 gi|282327707|gb|EFB57989.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282331891|gb|EFB61402.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596237|gb|EFC01198.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160]
 gi|283790937|gb|EFC29752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|295128622|gb|EFG58253.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576716|gb|EFH95431.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
          MN8]
 gi|315192996|gb|EFU23400.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
          CGS00]
          Length = 113

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+  + +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|15599695|ref|NP_253189.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099916|ref|ZP_01363834.1| hypothetical protein PaerPA_01000937 [Pseudomonas aeruginosa
          PACS2]
 gi|116052530|ref|YP_792844.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|254238841|ref|ZP_04932164.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719]
 gi|254244690|ref|ZP_04938012.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192]
 gi|296391210|ref|ZP_06880685.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313107088|ref|ZP_07793288.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9950738|gb|AAG07887.1|AE004863_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115587751|gb|ABJ13766.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126170772|gb|EAZ56283.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719]
 gi|126198068|gb|EAZ62131.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192]
 gi|310879790|gb|EFQ38384.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 187

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+ AK T  ++ + +G   S++S+ E   + ++I ++  +A +L+ PL  L 
Sbjct: 7  GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65


>gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 219

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +  R+   ++Q+E+  +    +  +S+ E   S  + + ++ +A  L+  +  L
Sbjct: 1  MIGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSVPDAEVLMRMASLLEVSVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|325519127|gb|EGC98605.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 203

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R E +LT  ++    G ++S +SE+E  K+   I     L + L   L +L 
Sbjct: 26 VGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85


>gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942]
 gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942]
          Length = 111

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  RKE   +  E+  + G A+S++S +E   ++  +I  +  ++  LD  +  
Sbjct: 1  MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family
          [Peptostreptococcus stomatis DSM 17678]
 gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family
          [Peptostreptococcus stomatis DSM 17678]
          Length = 104

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +RKE  +TQ ++ NR    +S IS+ E G    ++D +  ++   +  +  L
Sbjct: 3  LLGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYL 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|302520148|ref|ZP_07272490.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|333026104|ref|ZP_08454168.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|302429043|gb|EFL00859.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|332745956|gb|EGJ76397.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 120

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  LA  L      L
Sbjct: 9  LGEFLREQRRAARLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67


>gi|291518909|emb|CBK74130.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 104

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    +N R    +TQ ++         +IS +E G++ +++  +I  +  +   L +L+
Sbjct: 5  YGEQIKNYRINLGMTQNQVAKELDVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELV 64


>gi|312195167|ref|YP_004015228.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311226503|gb|ADP79358.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 404

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLW 78
          M         R+   LTQ  +    G ++ W+S++E G+  I  +D +  +A  L   L 
Sbjct: 1  MTIGERIAFYRRRRGLTQAVLAGLVGRSEDWLSKVERGEREIRRVDLLAEVAKALRVTLG 60

Query: 79 KLL 81
           LL
Sbjct: 61 DLL 63


>gi|228936982|ref|ZP_04099724.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228822697|gb|EEM68587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
          Length = 114

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E  ++   ++S IS LET  +  ++D++  +A   D  +  L+
Sbjct: 4  FGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLM 63


>gi|226303576|ref|YP_002763534.1| TetR family transcriptional regulator [Rhodococcus erythropolis
          PR4]
 gi|226182691|dbj|BAH30795.1| putative TetR family transcriptional regulator [Rhodococcus
          erythropolis PR4]
          Length = 308

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R  R+ + L+ +E+  R   + + +S +ETGK+ +++D +  +   L      L
Sbjct: 25 LIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDAL 84

Query: 81 L 81
          L
Sbjct: 85 L 85


>gi|218290714|ref|ZP_03494796.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218239252|gb|EED06451.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 72

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R E  LTQ+E+  R G  +   +++E GK TI+++    ++  +  P  +  +
Sbjct: 6  LAKWRIEHGLTQEEMAARCGLKRVTYAKVEYGK-TISVETAQKISRVVGVPWPQFFE 61


>gi|167578195|ref|ZP_02371069.1| DNA-binding protein [Burkholderia thailandensis TXDOH]
 gi|167819326|ref|ZP_02451006.1| DNA-binding protein [Burkholderia pseudomallei 91]
 gi|167849172|ref|ZP_02474680.1| DNA-binding protein [Burkholderia pseudomallei B7210]
 gi|167897769|ref|ZP_02485171.1| DNA-binding protein [Burkholderia pseudomallei 7894]
 gi|167906116|ref|ZP_02493321.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177]
 gi|257142894|ref|ZP_05591156.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 69

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R +R+ A LTQ ++  R    QS++S++E G+  ++I
Sbjct: 6  LRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 43


>gi|197119160|ref|YP_002139587.1| XRE family helix-turn-helix transcriptional regulator [Geobacter
          bemidjiensis Bem]
 gi|197088520|gb|ACH39791.1| helix-turn-helix transcriptional regulator, XRE family [Geobacter
          bemidjiensis Bem]
          Length = 99

 Score = 48.8 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTL 73
          L E   F++ F   R  A +TQ EI  R G  QS ++ LE   GK + +I  +   AH L
Sbjct: 24 LNEEFHFLDQFLKARAAAGVTQAEIAERIGTTQSAVARLESGRGKHSPSIATLEKYAHAL 83

Query: 74 D 74
           
Sbjct: 84 G 84


>gi|270262720|ref|ZP_06190991.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043404|gb|EFA16497.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                IR +  L+Q+ +   +G   S IS +E  K +  I  +  L       L
Sbjct: 9  GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSL 63


>gi|238025512|ref|YP_002909744.1| DNA-binding protein [Burkholderia glumae BGR1]
 gi|237880177|gb|ACR32509.1| DNA-binding protein [Burkholderia glumae BGR1]
          Length = 193

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E  +  G ++ ++S++E G ++ +I ++  +A  L  
Sbjct: 17 LGSKIRALRQRLKRTLDETASAAGISKPFLSQVERGLASPSITSLAGIAQALGV 70


>gi|229014716|ref|ZP_04171824.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
 gi|228746581|gb|EEL96476.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +++ ++  N  +  R E K++Q E+    G ++  IS +ETG+        ++L   LD 
Sbjct: 1  MKDELVLQNRLKVARAEKKISQGELAEMVGVSRQTISSIETGQFCPTAKLALVLCIALDK 60

Query: 76 PLWKLL 81
             +L 
Sbjct: 61 KFEELF 66


>gi|254387045|ref|ZP_05002322.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194345867|gb|EDX26833.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 223

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++   T  ++   TG + S +S LE+G+    ++ ++ LA      L +L+
Sbjct: 17 VGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQRRPTLELLLPLAKAHRVALDELV 76


>gi|121582580|ref|YP_974109.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42]
 gi|120608636|gb|ABM44374.1| helix-turn-helix domain protein [Acidovorax sp. JS42]
          Length = 120

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|152985673|ref|YP_001350449.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960831|gb|ABR82856.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 187

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+ AK T  ++ + +G   S++S+ E   + ++I ++  +A +L+ PL  L 
Sbjct: 7  GERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALF 65


>gi|15964050|ref|NP_384403.1| hypothetical protein SMc00377 [Sinorhizobium meliloti 1021]
 gi|15073226|emb|CAC41734.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 263

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F +  +  R   +++Q ++    G +   +S LETG+ST +   ++ LA  LD P  +
Sbjct: 3  FGSRLKEWRGHRRMSQLDLAMAAGISARHLSFLETGRSTPSEGMILRLASVLDVPARE 60


>gi|194336961|ref|YP_002018755.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194309438|gb|ACF44138.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 104

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R+R E  L      +  +     +  R+E  LTQ+ +    G  +S IS +E+  S +
Sbjct: 20 PERERFEYEL------QMDLIGQAIKQTRQERNLTQEALGKLIGVQKSQISRIESNASNV 73

Query: 62 NIDNMIILAHTLD 74
           ID ++ + + L 
Sbjct: 74 TIDTLMRVFNALQ 86


>gi|332704615|ref|ZP_08424703.1| helix-turn-helix domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554764|gb|EGJ51808.1| helix-turn-helix domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 110

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 6   RDEPHLSDAILRERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           R         +  R +F      +  R  R   +LTQ  +  R G  +S ISE+E GK  
Sbjct: 30  RAIEEAVQPNVPAREVFPESTPGSVLRGARGLRELTQAGLAARIGVLKSHISEMERGKRP 89

Query: 61  INIDNMIILAHTLDTPLWKLL 81
           I  D    L   LD P    L
Sbjct: 90  IGKDMARRLGQALDFPYRAFL 110


>gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
 gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
          Length = 63

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N    +RK+  LTQ ++       +  ++ +E  K    +     L+  L+T + KL  P
Sbjct: 3  NKIEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAFSLSKILNTEVDKLFTP 62


>gi|326943047|gb|AEA18943.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 63

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59


>gi|325522655|gb|EGD01175.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 193

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
            + P  +DA         +  R +R+  K T  E     G ++ ++S++E G ++ ++ 
Sbjct: 4  PTENPRSADAA----AALGSKIRALRQRLKRTLDETATVAGISKPFLSQVERGLASPSLT 59

Query: 65 NMIILAHTLDT 75
          ++  +A  L  
Sbjct: 60 SLAGIAQALGV 70


>gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++    N +  R   K++Q ++  R G +   IS+ ETG++  +  ++I LA   +  L 
Sbjct: 5  KIQLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWETGENYPDFMSLISLAQLFEVSLD 64

Query: 79 KLL 81
           L+
Sbjct: 65 ILV 67


>gi|306843020|ref|ZP_07475647.1| Cro/CI family transcriptional regulator [Brucella sp. BO2]
 gi|306286812|gb|EFM58353.1| Cro/CI family transcriptional regulator [Brucella sp. BO2]
          Length = 470

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|290959624|ref|YP_003490806.1| chitinase-promoter-binding protein [Streptomyces scabiei 87.22]
 gi|260649150|emb|CBG72264.1| putative chitinase-promoter-binding protein [Streptomyces scabiei
          87.22]
          Length = 289

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R       R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    +  
Sbjct: 9  VRRRRLGQELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVE 68


>gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL
          4222]
 gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL
          4222]
          Length = 145

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK  KL+Q ++ +R GF++  ++  E G+   + D +  +A   +     L
Sbjct: 1  MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|239815077|ref|YP_002943987.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239801654|gb|ACS18721.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 102

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R E  + Q+ + +  G  +S + ++E G+    +  ++ +A  L     +L+
Sbjct: 25 FGAVVRALRTEDGIAQETLAHLAGIERSHMGKIERGEHMPTLVLVLRIARALGRSAGELM 84


>gi|213019727|ref|ZP_03335532.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994768|gb|EEB55411.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 303

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R   + TQK++ ++ G     I E E G + I  D +  +A  L   +  LL
Sbjct: 170 GQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228



 Score = 42.3 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + R   + TQ E+ ++ G A   ++  E G   I I+ + ++A  L   +  LL
Sbjct: 16 GQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLYVIARVLSVNVVDLL 74


>gi|163814918|ref|ZP_02206306.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC
          27759]
 gi|158449857|gb|EDP26852.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC
          27759]
          Length = 159

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M F      +R +  L+Q+E+      ++  IS+ E  K+   +  ++ ++   D  L
Sbjct: 12 EGMTFGERLYELRNKNNLSQEELAEVLDVSRQSISKWENDKAYPEMTRLLFMSDYFDVSL 71

Query: 78 WKLLK 82
            L++
Sbjct: 72 DYLMR 76


>gi|126463028|ref|YP_001044142.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104692|gb|ABN77370.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC
           17029]
          Length = 201

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R  R    LTQ  +    G  +  ++E+ETG+   +I  +  LA  L   L  L
Sbjct: 145 LRVYRDLHGLTQAVLAETAGVNRVTVAEIETGRKQGSIATLRALAGALGVTLDDL 199


>gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
 gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri
          100-23]
          Length = 74

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK+  L+Q ++  + G A+  I+ +E  K   +++  I LA  L+T L  L 
Sbjct: 2  NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLF 59


>gi|72163177|ref|YP_290834.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71916909|gb|AAZ56811.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 401

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPL 77
          +          R+   L+Q+E       +++W+S++E G   ++ +  +  +A  LD P+
Sbjct: 6  QKALGRKIAQYRRRRGLSQREFAALINRSEAWVSQVERGVRKVDRMSVLAAVAEVLDVPV 65

Query: 78 WKL 80
           +L
Sbjct: 66 AEL 68


>gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+ + TQ+E+  +   ++S IS+ E G    ++ ++  L    D     LL
Sbjct: 4  LGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFDVSADFLL 63


>gi|329117349|ref|ZP_08246066.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907754|gb|EGE54668.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RKE K++Q ++  + G  +  I  LE G+   +++    L+      +  + 
Sbjct: 3  NNLQELRKEGKISQSDLAEQVGVTRQTIISLEKGRYNASLELAFKLSKYFHVGIEDIF 60


>gi|303229090|ref|ZP_07315894.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516243|gb|EFL58181.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 216

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R  RK   L+Q EI  R G+ + + I + ETG +   +  +  LA  L   +  LLK
Sbjct: 6  NIRYFRKLRNLSQDEIAKRLGYKSFTTIQKWETGMAEPPVGKLYELADILHVSIMDLLK 64


>gi|300088601|ref|YP_003759123.1| XRE family transcriptional regulator [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
 gi|299528334|gb|ADJ26802.1| transcriptional regulator, XRE family [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
          Length = 82

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
                R+ + +TQ+E+ +R G  Q  ISE E   +++ +  +  +A+ L   +   ++P
Sbjct: 13 KRLSEYRRLSGITQQELASRIGTKQPVISEFERMMNSLTLGFIERVANALGVEIKIRIQP 72


>gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus
          rhamnosus GG]
 gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 176

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK + L+Q E+    G ++  IS+ E   +  ++  +      L      L
Sbjct: 1  MFGERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|269798478|ref|YP_003312378.1| XRE family transcriptional regulator [Veillonella parvula DSM
          2008]
 gi|269095107|gb|ACZ25098.1| transcriptional regulator, XRE family [Veillonella parvula DSM
          2008]
          Length = 153

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  L+      L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 191

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +  E+  R G +++ I ++E G+S+     +  L+  L   +  L+
Sbjct: 13 GERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALGLSMSTLI 71


>gi|254359387|ref|ZP_04975659.1| DNA-binding protein [Burkholderia mallei 2002721280]
 gi|148028574|gb|EDK86534.1| DNA-binding protein [Burkholderia mallei 2002721280]
          Length = 201

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 25 LGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGV 78


>gi|145295867|ref|YP_001138688.1| hypothetical protein cgR_1792 [Corynebacterium glutamicum R]
 gi|140845787|dbj|BAF54786.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 107

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R+ R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80

Query: 74 DTPLWKLL 81
           T +  +L
Sbjct: 81 GTSVADVL 88


>gi|60594530|pdb|1Y9Q|A Chain A, Crystal Structure Of Hth_3 Family Transcriptional
          Regulator From Vibrio Cholerae
          Length = 192

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 9  KSQIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIASGLE 64


>gi|120599870|ref|YP_964444.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146292194|ref|YP_001182618.1| XRE family transcriptional regulator [Shewanella putrefaciens
          CN-32]
 gi|120559963|gb|ABM25890.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella sp. W3-18-1]
 gi|145563884|gb|ABP74819.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella putrefaciens CN-32]
          Length = 182

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L    
Sbjct: 4  GASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62


>gi|107025820|ref|YP_623331.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116692996|ref|YP_838529.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|105895194|gb|ABF78358.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          AU 1054]
 gi|116650996|gb|ABK11636.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64


>gi|331086036|ref|ZP_08335119.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406959|gb|EGG86464.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 72

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RKE  ++Q+E+          IS+ E G S  +I  +I L+  L   L+ LL 
Sbjct: 10 IARKRKERNMSQRELAEYLHITDKAISKWERGLSFPDITILIPLSEILGVSLYDLLT 66


>gi|313894435|ref|ZP_07828000.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
 gi|313441259|gb|EFR59686.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R++  +TQ ++ +++G AQS+IS+LE+G        +  + + L 
Sbjct: 27 RRQLGMTQYQLADKSGLAQSYISDLESGAIDPRWSTIYRVVNGLG 71


>gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens
          DSM 19672]
 gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens
          DSM 19672]
          Length = 200

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R    LT +++ N TGF+++ IS++E    T  I  +  +A  L+  +    +
Sbjct: 9  GERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVTPPITTLAKIAKVLNVKMVYFFE 68


>gi|298385377|ref|ZP_06994935.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
 gi|298261518|gb|EFI04384.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 1_1_14]
          Length = 103

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 8  EPHLSD-AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           PH        +  +     +  RK   +TQ+E+  + G  ++ +S++E+G   + +  +
Sbjct: 22 TPHRDKYEAELQSFLIGEAIKKARKSQNMTQEELAQKIGVQRAQVSKIESG-RNLTLSTV 80

Query: 67 IILAHTLDTP 76
            +   +   
Sbjct: 81 ARVFRAMGME 90


>gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202]
 gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202]
          Length = 194

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 RK    T  E+  R+G +Q+ IS++E G S+ +   +  LA  ++  L
Sbjct: 15 ARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTSSPSATILSRLASAMNITL 69


>gi|326203817|ref|ZP_08193679.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325985915|gb|EGD46749.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          NN + +R+   L Q+++    G  ++++S+LE  K +     M  +       L
Sbjct: 7  NNIQKLRESRGLNQEDLAEVLGVTRTYLSKLENQKFSPGPGLMQKVCSFFGKEL 60


>gi|227512465|ref|ZP_03942514.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC
          11577]
 gi|227084290|gb|EEI19602.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC
          11577]
          Length = 103

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R +RK   +T  E+  + GF+QS+I+  ET ++  N++ +  +   L T
Sbjct: 7  GEKLRKLRKSRGMTAAELSAKMGFSQSYINHFETDRAVPNVNALGKILKYLGT 59


>gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814]
 gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814]
          Length = 377

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +R +  +TQ+++  + G ++  +S+ ET  +  +I+ + +LA   +  + +
Sbjct: 1  MTLGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAIPDIEKLKLLAEIFEVSITE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104]
 gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium
          avium 104]
          Length = 474

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R +R+E  LTQ  +    G + S++++LE  +  I +  ++ L    D P
Sbjct: 7  GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLP 60


>gi|332967905|gb|EGK06997.1| XRE family transcriptional regulator [Kingella kingae ATCC 23330]
          Length = 89

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLD 74
          + IF   F+  RK  K+TQ+++    G     A + I+  E G    +++ ++ +A  LD
Sbjct: 5  QQIFTKRFKEARKAKKMTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLVWIAQILD 64

Query: 75 TPL 77
           P 
Sbjct: 65 VPP 67


>gi|325527860|gb|EGD05122.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEALGVP 64


>gi|321272347|gb|ADW80228.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 306

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQK++ N+ G     I E E G+S ++++ +  +A  L   +  LL
Sbjct: 163 VGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISIIDLL 222



 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R E   TQK++  + G     I   E G   I I  +  +A  L   +  L+
Sbjct: 13 VGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEALSVNVKGLV 72


>gi|307324538|ref|ZP_07603745.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889782|gb|EFN20761.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 410

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
          +        +R    LTQ+++ +R G +   I  LE G +    I     LA  LD  L 
Sbjct: 4  LSVGKRLARLRDIRDLTQEQLADRAGVSVDTIRRLEQGTQRGARIATYQKLAGALDIELA 63

Query: 79 KLL 81
          +LL
Sbjct: 64 RLL 66


>gi|295106127|emb|CBL03670.1| looped-hinge helix DNA binding domain, AbrB family [Gordonibacter
          pamelaeae 7-10-1-b]
          Length = 140

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N ++ R+   LTQ+++      A+  +++ E G S  ++ N   LA  LD  L  L
Sbjct: 1  MIGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDAL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|284042857|ref|YP_003393197.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947078|gb|ADB49822.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E +      R +R    L+Q+ + +R G  ++++  +E G+       +  LA+ LD P
Sbjct: 12 PEFVALGRAAREVRARRDLSQEVLGSRGGLHRNYVGAIERGEINPTFRVLSKLAYGLDVP 71

Query: 77 LWKLL 81
          L +L 
Sbjct: 72 LSELF 76


>gi|262199036|ref|YP_003270245.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262082383|gb|ACY18352.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 133

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R  RK  +LTQ++   R G +  + + +E G +  ++     +A  L      LL
Sbjct: 14 REARKALELTQEDAAERIGVSAEFYARIERGNALPSVPTFTRIAMALGVSADTLL 68


>gi|163736370|ref|ZP_02143789.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107]
 gi|163741095|ref|ZP_02148487.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385448|gb|EDQ09825.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161390240|gb|EDQ14590.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107]
          Length = 207

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +A   E +      R +RK    T +   N+ G A+S +S++E G+ +   + +  LA
Sbjct: 16 SGEAAETEPLDLGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLA 75

Query: 71 HTLDTPLWKLLK 82
            L   + +L  
Sbjct: 76 VGLQISVPQLFT 87


>gi|154496456|ref|ZP_02035152.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC
          29799]
 gi|150274539|gb|EDN01616.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC
          29799]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    L Q+E+    G ++  IS +E G    +I   + +A    T + ++ 
Sbjct: 5  NRLKELRAAKGLNQQELGALVGASRQTISLIERGDYNPSITLALRIAKVFGTTVEQVF 62


>gi|38707970|ref|NP_945111.1| gp80 [Burkholderia phage phi1026b]
 gi|38505462|gb|AAR23231.1| gp80 [Burkholderia phage phi1026b]
          Length = 128

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++
Sbjct: 66  VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 122


>gi|331089117|ref|ZP_08338021.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330406017|gb|EGG85541.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              +  RKE KL+Q +I  R       +S++E GK+T ++     L+  L+
Sbjct: 9  GERIKTRRKELKLSQTDIYERCDITSGALSKIENGKTTPSVIAFYKLSQVLE 60


>gi|318062191|ref|ZP_07980912.1| regulatory protein [Streptomyces sp. SA3_actG]
 gi|318081002|ref|ZP_07988334.1| regulatory protein [Streptomyces sp. SA3_actF]
          Length = 284

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R+   N  R +R++  +T + +    G+ +S IS +E GK+  ++ ++           
Sbjct: 10 ARIALGNRLRALRRQQGITARALAADCGWHESKISRVENGKALPSVQDLTKWTEACGAAP 69


>gi|310830880|ref|YP_003965981.1| hypothetical protein PPSC2_p0524 [Paenibacillus polymyxa SC2]
 gi|309250347|gb|ADO59913.1| hypothetical protein PPSC2_p0524 [Paenibacillus polymyxa SC2]
          Length = 90

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
          E + F       RK    T  E+   TG  +S+I  LE G+    +   +  LA  L   
Sbjct: 23 EMIAFGKWVSEKRKNEGKTLDELAKITGIDKSYIHRLEKGERTNPSFITVYSLATALGKD 82

Query: 77 LWKLLK 82
          + +++K
Sbjct: 83 IREIIK 88


>gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare
          Y25]
 gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare
          Y25]
          Length = 183

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R    L+Q+ +  R G   S IS +E+G++  ++ ++  +   L   +
Sbjct: 2  DQLDIGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRANPSVGSLKRILDGLPIGM 61

Query: 78 WKLL 81
           +  
Sbjct: 62 AEFF 65


>gi|260892321|ref|YP_003238418.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864462|gb|ACX51568.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 144

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             + +R    L+ KE+  R G + +++ +LE GK   +     +LA   + P  +L  P
Sbjct: 76  KLQALRLSYGLSLKELSRRVGVSATFLGQLERGKKRASPATRELLAQHFNVPEHELFDP 134


>gi|260460417|ref|ZP_05808669.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034062|gb|EEW35321.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
          Length = 238

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               R  RK+  +T  ++   T  +   +S++E G ++ ++  +  L+  L  P+    +
Sbjct: 54  GREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFR 113


>gi|257870000|ref|ZP_05649653.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804164|gb|EEV32986.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 112

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R E KLTQ+E+ ++ G  +   +  E+GK   +   + +LA         L
Sbjct: 1  MFPQIIKKLRLEKKLTQQEVADKIGITRPAYTAYESGKREPDFSMLQVLADLFGVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US]
 gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US]
          Length = 112

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               +N R     TQK++        + +S  E G++  +ID +  LA  LD     L
Sbjct: 3  LAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNEPSIDTLKKLATKLDVSFDYL 61


>gi|302519920|ref|ZP_07272262.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|318056959|ref|ZP_07975682.1| DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|302428815|gb|EFL00631.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 291

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|259909005|ref|YP_002649361.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224964627|emb|CAX56141.1| Predicted transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283479016|emb|CAY74932.1| putative DNA-binding protein [Erwinia pyrifoliae DSM 12163]
          Length = 187

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R E   + + +   TG +++ +S +E  +++     +  L +     + +LL
Sbjct: 10 LARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTMSRLL 69


>gi|333026335|ref|ZP_08454399.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332746187|gb|EGJ76628.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 291

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GQELRKLREARNMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|328956479|ref|YP_004373865.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4]
 gi|328672803|gb|AEB28849.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     ++ R +   +Q ++      ++  IS+ E   S  ++DN++ L+         
Sbjct: 1  MLLGEKLKSSRVKKGFSQNDVAEELHISRQSISKWENDISYPDLDNLVKLSTYYQVSTDH 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|291550061|emb|CBL26323.1| Helix-turn-helix [Ruminococcus torques L2-14]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N RN+R++   TQKE+       Q+  S+ E GK  + ID  I LA      +  L+
Sbjct: 3  FENIRNLREDNDKTQKEVAAYLNIKQTTYSKYELGKINVPIDVFIKLADYYTVSIDYLV 61


>gi|262191222|ref|ZP_06049420.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT
          5369-93]
 gi|262032888|gb|EEY51428.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT
          5369-93]
          Length = 181

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|255655369|ref|ZP_05400778.1| putative phage repressor [Clostridium difficile QCD-23m63]
          Length = 118

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +RKE  LTQ+E+  + G +Q  +   ET     +   +  LA   D  +  L
Sbjct: 1  MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|239817524|ref|YP_002946434.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804101|gb|ACS21168.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 173

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           A+++  E+   +G + S +S +E G  + +++ +  LA+ L  P  +  
Sbjct: 2  AAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPTSRFF 51


>gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 113

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++    N R  R+   +TQK++ +  G   + IS  E G ++I+I  ++ + + L+  L 
Sbjct: 5  KLRVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLD 64

Query: 79 KL 80
           +
Sbjct: 65 DI 66


>gi|190574387|ref|YP_001972232.1| putative transcriptional repressor protein [Stenotrophomonas
          maltophilia K279a]
 gi|190012309|emb|CAQ45935.1| putative transcriptional repressor protein [Stenotrophomonas
          maltophilia K279a]
          Length = 108

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    +  R    L+QKE+  R G     A   I++ E GK    ++    LA  L  P
Sbjct: 11 FARRLKQARLHTGLSQKELGIRAGLDPHVASPRINQYERGKHEPMLEIAERLAQALGIP 69


>gi|153826821|ref|ZP_01979488.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2]
 gi|149739342|gb|EDM53588.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2]
          Length = 181

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|254252819|ref|ZP_04946137.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158]
 gi|124895428|gb|EAY69308.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158]
          Length = 232

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           ++   P   DA + ER+      R++R     T   +  R+G ++S IS +E   ++   
Sbjct: 27  QEETTPPGGDASINERI--ARRVRDLRATRGYTLDALAARSGVSRSMISLVERASASPTA 84

Query: 64  DNMIILAHTLDTPLWKLL 81
             +  LA  L   L  L 
Sbjct: 85  VVLDKLAAGLGVSLAALF 102


>gi|50843643|ref|YP_056870.1| putative transcriptional regulator [Propionibacterium acnes
           KPA171202]
 gi|50841245|gb|AAT83912.1| putative transcriptional regulator [Propionibacterium acnes
           KPA171202]
          Length = 288

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 29/83 (34%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P +      +               +  R   + T  ++ +  G ++  +  +E G   
Sbjct: 85  LPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144

Query: 61  INIDNMIILAHTLDTPLWKLLKP 83
             +  ++ L+  L   L  L++P
Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167


>gi|134295176|ref|YP_001118911.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134138333|gb|ABO54076.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
          G4]
          Length = 221

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           DA + ER+      R++R     T   +  R+G ++S IS +E   ++     +  LA 
Sbjct: 10 PDAGINERI--ARRVRDLRTLRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAA 67

Query: 72 TLDTPLWKLL 81
           L   L  L 
Sbjct: 68 GLGVSLAALF 77


>gi|15641970|ref|NP_231602.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
          N16961]
 gi|121590656|ref|ZP_01677990.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80]
 gi|121728635|ref|ZP_01681654.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52]
 gi|147674892|ref|YP_001217496.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153217017|ref|ZP_01950781.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587]
 gi|153801860|ref|ZP_01956446.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3]
 gi|153819310|ref|ZP_01971977.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC
          8457]
 gi|153822466|ref|ZP_01975133.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33]
 gi|227082095|ref|YP_002810646.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2]
 gi|229507941|ref|ZP_04397446.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX
          330286]
 gi|229511823|ref|ZP_04401302.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          B33]
 gi|229515349|ref|ZP_04404809.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          TMA 21]
 gi|229518960|ref|ZP_04408403.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          RC9]
 gi|229607486|ref|YP_002878134.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          MJ-1236]
 gi|254849056|ref|ZP_05238406.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745280|ref|ZP_05419229.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera
          CIRS 101]
 gi|262156005|ref|ZP_06029125.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          INDRE 91/1]
 gi|262167921|ref|ZP_06035621.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          RC27]
 gi|298497998|ref|ZP_07007805.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9656508|gb|AAF95116.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1
          biovar El Tor str. N16961]
 gi|121547499|gb|EAX57605.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80]
 gi|121629098|gb|EAX61543.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52]
 gi|124113941|gb|EAY32761.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587]
 gi|124122632|gb|EAY41375.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3]
 gi|126510130|gb|EAZ72724.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC
          8457]
 gi|126520042|gb|EAZ77265.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33]
 gi|146316775|gb|ABQ21314.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395]
 gi|227009983|gb|ACP06195.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2]
 gi|227013865|gb|ACP10075.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395]
 gi|229343649|gb|EEO08624.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          RC9]
 gi|229348054|gb|EEO13013.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          TMA 21]
 gi|229351788|gb|EEO16729.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          B33]
 gi|229355446|gb|EEO20367.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX
          330286]
 gi|229370141|gb|ACQ60564.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          MJ-1236]
 gi|254844761|gb|EET23175.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255737110|gb|EET92506.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera
          CIRS 101]
 gi|262023648|gb|EEY42349.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          RC27]
 gi|262030183|gb|EEY48827.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          INDRE 91/1]
 gi|297542331|gb|EFH78381.1| transcriptional regulator [Vibrio cholerae MAK 757]
          Length = 181

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|271966668|ref|YP_003340864.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509843|gb|ACZ88121.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 201

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++   T  ++   TG + S +S LE+G     ++ ++ LA      L +L+
Sbjct: 12 VGPRLRTLRRQRDTTLADLSATTGISVSTLSRLESGARRPTLELLLPLARAHGVTLDELV 71


>gi|320007231|gb|ADW02081.1| Cupin 2 conserved barrel domain protein [Streptomyces
          flavogriseus ATCC 33331]
          Length = 194

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R  A L+  E+  R   ++  +  LE  +   N   ++ LA TL   +  LL
Sbjct: 11 LARNVRAARTRAGLSLDELGRRAKVSKGALVGLEKAQGNPNFATLVRLADTLGISVSALL 70

Query: 82 K 82
          +
Sbjct: 71 E 71


>gi|257464929|ref|ZP_05629300.1| transcriptional regulator/helix-turn-helix domain-containing
          protein [Actinobacillus minor 202]
 gi|257450589|gb|EEV24632.1| transcriptional regulator/helix-turn-helix domain-containing
          protein [Actinobacillus minor 202]
          Length = 129

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             + +R+  + +Q+++  +   + +  + +E G++ +++D +  +A  LD  +  L+ P
Sbjct: 5  EKIKKLREAKEWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDIVNLISP 64


>gi|326204877|ref|ZP_08194730.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325984926|gb|EGD45769.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 108

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R+ R+   LT++        + +++ ++E G+  ++++ +  ++  L   L  L+K
Sbjct: 7  GKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVSLDYLIK 66


>gi|256847858|ref|ZP_05553303.1| conserved hypothetical protein [Lactobacillus coleohominis
          101-4-CHN]
 gi|256715547|gb|EEU30523.1| conserved hypothetical protein [Lactobacillus coleohominis
          101-4-CHN]
          Length = 189

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R    L+Q+++      +   I  LE G+   +I+ + ++A  L   +  L
Sbjct: 22 MVNTQIKELRVAKGLSQEQLAEAAKVSVRTIQRLEAGQ-DGSIETLNLVAGALGVSVRDL 80

Query: 81 LK 82
           +
Sbjct: 81 FE 82


>gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis
          Bt407]
 gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis
          Bt407]
 gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 145

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK+ KL+Q E+ +R GF++  ++  E G+   + D +  +A   +     L
Sbjct: 1  MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225017776|ref|ZP_03706968.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum
          DSM 5476]
 gi|224949427|gb|EEG30636.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum
          DSM 5476]
          Length = 106

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F+ +R +  LTQ E+    G  ++  + +E GK   + + + +LA     P+  L 
Sbjct: 2  RFKELRNKRDLTQLEVAEYLGITRAAYTNIENGKREADYNTLTMLARLYKVPIGDLF 58


>gi|209546022|ref|YP_002277912.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209538879|gb|ACI58812.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 227

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  P+  
Sbjct: 38  MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPMTA 97

Query: 80  LLK 82
             +
Sbjct: 98  FFR 100


>gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483]
 gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii
          DSM 17565]
 gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483]
 gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii
          DSM 17565]
          Length = 94

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + +RK   ++QKE+ N  G + + +  +E+G +  +   +  + + L  P   LL
Sbjct: 4  GNAIKLLRKRKDISQKELSNLCGISANALCSIESGGTFPSKSTIAKICNALKIPESYLL 62


>gi|83941659|ref|ZP_00954121.1| DNA binding protein, putative [Sulfitobacter sp. EE-36]
 gi|83847479|gb|EAP85354.1| DNA binding protein, putative [Sulfitobacter sp. EE-36]
          Length = 173

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R    L+   +   +G ++S +S++E G+S+  I  +  L   L      LL
Sbjct: 1  MKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLWNLTRALQVDFAGLL 56


>gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 123

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R+E  L QKE+    G  ++ +S  E GK     + +  LA+ L+     
Sbjct: 2  KTIGEKIQILREERNLKQKELAELAGITEATLSRYENGKREPKGEIISKLANVLNVSTDY 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina
          NCIMB 400]
 gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella frigidimarina NCIMB 400]
          Length = 182

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L    
Sbjct: 4  GTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVDFF 62


>gi|297171001|gb|ADI22016.1| predicted transcriptional regulators [uncultured myxobacterium
          HF0200_01L06]
          Length = 265

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R  R +  LTQ ++ +R+G +   +S +ETG++  +   ++ LA  L+ P
Sbjct: 6  GELLRYWRDKRGLTQFDLADRSGISCRHLSFVETGRAGPSRQTILTLARVLEIP 59


>gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 362

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  LTQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|317508397|ref|ZP_07966068.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316253305|gb|EFV12704.1| hypothetical protein HMPREF9336_02440 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 86

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R     T  E+   +G ++S I  +E GKS  N++ M  L+  L   L +L
Sbjct: 10 LIAEELKALRSRRGFTLDELELASGVSRSTIWRIENGKSDPNVEQMTRLSRALGLDLPRL 69

Query: 81 LK 82
          ++
Sbjct: 70 VQ 71


>gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum
          JDM301]
 gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum
          subsp. longum JDM301]
          Length = 356

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  LTQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|312139364|ref|YP_004006700.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325672755|ref|ZP_08152451.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|311888703|emb|CBH48015.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325556632|gb|EGD26298.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 120

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R  R     T +E+ N    +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEIERGRKEASSELLAAICDALEVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 EVL 68


>gi|295133936|ref|YP_003584612.1| prophage LambdaCh01, repressor protein [Zunongwangia profunda
          SM-A87]
 gi|294981951|gb|ADF52416.1| putative prophage LambdaCh01, repressor protein [Zunongwangia
          profunda SM-A87]
          Length = 251

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R IR   KL+Q+         +  +   E  +S   I+ +I +A+     +  LL
Sbjct: 4  FGKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSEPRIETIIKIANHFSITIDDLL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum
          subsp. longum F8]
          Length = 356

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  LTQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|289640850|ref|ZP_06473021.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289509426|gb|EFD30354.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 79

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R  A L+Q+E+  R G  Q +I ELE GK +I +D +          L  
Sbjct: 11 ESLGRILQQARLLAGLSQRELARRLGTTQKYIWELEAGKPSIVMDRLFAAMRETGMELST 70

Query: 80 LLKP 83
           + P
Sbjct: 71 TITP 74


>gi|258507369|ref|YP_003170120.1| transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|257147296|emb|CAR86269.1| Transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|259648728|dbj|BAI40890.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 100

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R+ A L+Q+E+ N++G  ++ I+ +E G +  +I+ +  +A+ L   
Sbjct: 47 EARQNAGLSQQELANKSGVPKTTIARIEQG-NNTSIETLTKIANALGKQ 94


>gi|302543610|ref|ZP_07295952.1| PbsX family transcriptional regulator [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302461228|gb|EFL24321.1| PbsX family transcriptional regulator [Streptomyces
          himastatinicus ATCC 53653]
          Length = 133

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R+ A+L+ +++ +  G +  ++S++E G    + + +  LA  L      L
Sbjct: 13 LREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETL 67


>gi|253576963|ref|ZP_04854287.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843694|gb|EES71718.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 115

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IRK  +L QKE   + G +Q  +S++E G    + + +I L +T    L  LL
Sbjct: 3  LGEKVRTIRKSHELNQKEFALKIGVSQGTLSDIERGVCLPSCETIIALKNTFQCDLNWLL 62


>gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 55813]
 gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp.
          infantis ATCC 55813]
          Length = 362

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  LTQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM
          20213]
 gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM
          20213]
          Length = 356

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  LTQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|163858880|ref|YP_001633178.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163262608|emb|CAP44911.1| predicted transcriptional regulator [Bordetella petrii]
          Length = 99

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+       + +R    L+Q+   + +  +++++S LE G     +  +  L   +    
Sbjct: 3  EQYDIGQAIKTVRTLRGLSQEAFSDVS--SRTYLSTLERGLKNPTLSKLAELCEVMQIHP 60

Query: 78 WKLL 81
            L+
Sbjct: 61 LTLM 64


>gi|56476841|ref|YP_158430.1| hypothetical protein ebA2491 [Aromatoleum aromaticum EbN1]
 gi|56312884|emb|CAI07529.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 140

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R  R    ++Q+ + +  G  +S + ++E G+    +  ++ +A  L      L+
Sbjct: 67  FGAAVREERMNQAISQEALAHLAGIERSHMGKIERGEHVPTLPLILKIARALKCSSAHLM 126


>gi|54027183|ref|YP_121425.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54018691|dbj|BAD60061.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 136

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 26/55 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R+ A+++ +++    G +  ++S++E G    + + +  +A  L      L
Sbjct: 21 IRAQREAAQVSLRQLAALAGVSNPYLSQIERGLRNPSAEVLAQIAKALRVSSEVL 75


>gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium
          longum DJO10A]
 gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum
          DJO10A]
 gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum
          DJO10A]
          Length = 362

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  LTQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|107027629|ref|YP_625140.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116693658|ref|YP_839191.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|105897003|gb|ABF80167.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          AU 1054]
 gi|116651658|gb|ABK12298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 81

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               + R  R    ++Q+ + +     +S + ++E G+  + + N++ ++  L     +
Sbjct: 15 KQIGRSIRARRLALNISQESLAHLANIDRSHMGKIERGERNVTLLNLLRISRALAWQPSE 74

Query: 80 LL 81
          LL
Sbjct: 75 LL 76


>gi|331701987|ref|YP_004398946.1| helix-turn-helix domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129330|gb|AEB73883.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL
          B-30929]
          Length = 196

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R+ R+    +Q+E+ ++   ++  IS  ETGK   +I N+++L+      + +L+K
Sbjct: 4  GNKIRDYREVRGFSQEELASKIYVSRQTISNWETGKQYPDIQNVLLLSVLFGVSVDELIK 63


>gi|284028971|ref|YP_003378902.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283808264|gb|ADB30103.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                  R+ A+L+ +++ +  G +  ++S++E G    + D +  LA  L      L
Sbjct: 15 VGEYLAEQRRHAQLSLRQLSDLAGVSNPYLSQIERGLRKPSADVLQQLAKALRISAETL 73


>gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 477

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +   +       R +R+E  LTQ  +    G + S++++LE  +  I +  ++ L    D
Sbjct: 2  VRVAKTFAGARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFD 61

Query: 75 TP 76
           P
Sbjct: 62 LP 63


>gi|302875482|ref|YP_003844115.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689097|ref|ZP_07631543.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302578339|gb|ADL52351.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 132

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 25/53 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              +  R  A L+ + +  +   ++S + ++E GK+  ++  +  +A  L+ 
Sbjct: 4  GEKIKQYRNLAGLSIRVLAAKADISKSTLGDIENGKTNTSVKTITSIAEALNV 56


>gi|238061301|ref|ZP_04606010.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237883112|gb|EEP71940.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 481

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 28/51 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R++R+ AK++ +++  + G +  ++S++E G    + + +  LA  L   
Sbjct: 14 IRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRKPSAEVLQQLASALRVS 64


>gi|227504853|ref|ZP_03934902.1| transcriptional regulator ClgR [Corynebacterium striatum ATCC
          6940]
 gi|227198544|gb|EEI78592.1| transcriptional regulator ClgR [Corynebacterium striatum ATCC
          6940]
          Length = 124

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P          + +L  R       R  R +  +T +E+      +  ++SELE G+  
Sbjct: 20 VPGAVETPKRAPEPLL--REALGLTLRAFRADKGVTLRELAGVARVSPGYLSELERGRKE 77

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          ++ + +  + H L+  +  +L
Sbjct: 78 VSSELLASVCHALEVSVADVL 98


>gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB74]
 gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          sp. SPB74]
          Length = 509

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    +Q ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|149276668|ref|ZP_01882811.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39]
 gi|149232337|gb|EDM37713.1| hypothetical protein PBAL39_14849 [Pedobacter sp. BAL39]
          Length = 105

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 17 RER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           ER   I  +N R IR+    TQ+ I  +   +Q+  S+LE G S I+ID +  +A  L+
Sbjct: 15 PERRPKIVADNIRKIREFRNYTQEYIAMKLNISQNAYSKLELGYSKISIDRLFQIAELLE 74

Query: 75 TPLWKLL 81
              +L+
Sbjct: 75 VDAGELV 81


>gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|29374945|ref|NP_814098.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|257088816|ref|ZP_05583177.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|281416438|ref|YP_003347358.1| cI repressor protein [Enterococcus phage phiFL4A]
 gi|29342403|gb|AAO80169.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|256997628|gb|EEU84148.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|270209614|gb|ACZ64153.1| cI repressor protein [Enterococcus phage phiFL4A]
 gi|315160614|gb|EFU04631.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0645]
 gi|315579460|gb|EFU91651.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0630]
          Length = 120

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
          F    + +RK  K++Q+E+    G  +  IS  E G  + ++ D +  ++   D  +  L
Sbjct: 4  FALRLKELRKNKKMSQQELATFLGMKRENISNYERGVITNVSSDTLEKISELFDVSIDYL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|323142495|ref|ZP_08077315.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413072|gb|EFY03971.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 97

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            E  +     R +R    LTQ  +    G +Q+ +  +E G+  + + N++ L   L+
Sbjct: 2  QEEIKLIGRRIRLLRTAKNLTQTGLAKEMGISQTHLCNIECGRVPVTLPNLLKLHSLLE 60


>gi|319646699|ref|ZP_08000928.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2]
 gi|317391287|gb|EFV72085.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2]
          Length = 183

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N + +RK    +  ++ + TG ++  ++++E G S+  I  +  +A+ L      
Sbjct: 6  KQVAENIKRLRKVRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTS 65

Query: 80 L 80
          L
Sbjct: 66 L 66


>gi|309774559|ref|ZP_07669585.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917674|gb|EFP63388.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 400

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F      +RK+   TQ ++      +   +S  ET +   +I  +  L+  L     
Sbjct: 3  KEQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGVSCD 62

Query: 79 KLL 81
          +LL
Sbjct: 63 ELL 65


>gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 166

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +     +N RKE  LTQ+ +      ++  +S+ E   S  ++DN+I L+     
Sbjct: 1  MIGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGV 55


>gi|229827273|ref|ZP_04453342.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC
          49176]
 gi|229788891|gb|EEP25005.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC
          49176]
          Length = 115

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
              R++R E+KLTQ ++       QS I+++E G+  I  D +  L+
Sbjct: 10 GKRIRSLRYESKLTQTKLSEYLSLDQSMIAKIEKGERNITSDVIEKLS 57


>gi|225019956|ref|ZP_03709148.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum
          DSM 5476]
 gi|224947320|gb|EEG28529.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum
          DSM 5476]
          Length = 122

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +N+R +A L QKE+      ++S IS  E  K+  ++  +I LA   +     LL
Sbjct: 3  FGDKIKNLRTDADLKQKEVAEILKVSRSSISSYEQNKNQPDLHAVIELAKLFNVSTDYLL 62


>gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 189

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R +  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|251794117|ref|YP_003008848.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247541743|gb|ACS98761.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E        R  RK    TQ+E+    G + + +  LE G    +   M+ +A+TL    
Sbjct: 2  ENHQLAQRVRAFRKLKGYTQQELAKVLGVSVAVLGSLERGTRKPDARLMMNIANTLGISY 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 EELM 65


>gi|121594519|ref|YP_986415.1| XRE family transcriptional regulator [Acidovorax sp. JS42]
 gi|124267592|ref|YP_001021596.1| hypothetical protein Mpe_A2406 [Methylibium petroleiphilum PM1]
 gi|330824415|ref|YP_004387718.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|120606599|gb|ABM42339.1| transcriptional regulator, XRE family [Acidovorax sp. JS42]
 gi|124260367|gb|ABM95361.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
 gi|329309787|gb|AEB84202.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 99

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 1  MPRR--KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          MP+R  +R  P  +     E  I F    R  R    + Q+ + +  G  +S + ++E G
Sbjct: 1  MPKRSIQRGRPTGTTTYEAEPAIAFGAAVREERTNQGIAQETLAHMAGIERSHMGKIERG 60

Query: 58 KSTINIDNMIILAHTLDTPLWKLLK 82
          +    +  ++ +A  L      L+ 
Sbjct: 61 EHVPTLPLILKIARALKCSSAHLMT 85


>gi|328545047|ref|YP_004305156.1| XRE family transcriptional regulator [polymorphum gilvum
          SL003B-26A1]
 gi|326414789|gb|ADZ71852.1| XRE family transcriptional regulator [Polymorphum gilvum
          SL003B-26A1]
          Length = 207

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +    EP   D    +R I  +  + +R +   +  ++   +G +++ +S LE  + + +
Sbjct: 14 KDPLPEPSPLDPAQLDRQI-ADRLKALRLQRGWSLDDLARLSGVSRASLSRLENAEVSAS 72

Query: 63 IDNMIILAHTLDTPLWKLL 81
             +  L      PL +L+
Sbjct: 73 AATLGRLCAAHGMPLSRLM 91


>gi|315640505|ref|ZP_07895613.1| XRE family transcriptional regulator [Enterococcus italicus DSM
          15952]
 gi|315483709|gb|EFU74197.1| XRE family transcriptional regulator [Enterococcus italicus DSM
          15952]
          Length = 139

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +RKE ++TQ  +      +   +S  E GK   +I N++ L+   D  L +L+K
Sbjct: 4  GEKIQLLRKEKQMTQNMVAEVLHVSTQAVSNWERGKGYPDIQNILQLSDLFDVSLDELIK 63


>gi|289522607|ref|ZP_06439461.1| toxin-antitoxin system, antitoxin component, Xre family
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504443|gb|EFD25607.1| toxin-antitoxin system, antitoxin component, Xre family
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 126

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISEL--ETGKSTINIDNMIILAHTLDTP 76
          R+ F+     I +   +TQKE+ +R G +++++S +  +  +    ++ ++ L+  ++  
Sbjct: 27 RLQFLEGISAIMESQGITQKELADRMGVSEAYLSRVFNDNVEKNFTLNTLVELSKAVNAE 86

Query: 77 LWKLLKP 83
          +  ++ P
Sbjct: 87 IKIIVTP 93


>gi|262171043|ref|ZP_06038721.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus
          MB-451]
 gi|261892119|gb|EEY38105.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus
          MB-451]
          Length = 217

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  + +RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 44 KSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 99


>gi|258621267|ref|ZP_05716301.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573]
 gi|258586655|gb|EEW11370.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573]
          Length = 211

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  + +RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 38 KSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 93


>gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
 gi|302477078|gb|EFL40171.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
          Length = 110

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +P  + +    +     +  +  ++ R IR+E  LTQ ++    G +Q+ +S++E G+  
Sbjct: 21 VPDAEWESRKQAARTATDAYVVGHHLREIREEQGLTQGQVAASVGISQARVSQIERGEIH 80

Query: 61 INIDNMIILAHTLD 74
           N++ M   A  L 
Sbjct: 81 -NLETMRAYAEALG 93


>gi|229491001|ref|ZP_04384834.1| regulatory protein [Rhodococcus erythropolis SK121]
 gi|229322117|gb|EEN87905.1| regulatory protein [Rhodococcus erythropolis SK121]
          Length = 194

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+++++T  ++   T  + S +S LE+G    N++ ++ +A     PL  L+
Sbjct: 14 GPRLRALRQQSEMTLADLSEATDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72


>gi|184160014|ref|YP_001840883.1| transcriptional regulator [Acinetobacter baumannii ACICU]
 gi|183211608|gb|ACC59005.1| Predicted transcriptional regulator [Acinetobacter baumannii
          ACICU]
          Length = 97

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 30/53 (56%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RK  +++Q E+    G + S++SE+E+GK    ++ +   +   D P+  L+
Sbjct: 9  MRKYHRISQTELSQSLGISNSYLSEIESGKKKPTLELLDKYSEYFDIPVSSLM 61


>gi|307709978|ref|ZP_07646425.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619349|gb|EFN98478.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 114

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
               + +R  + LTQ +I       QS I+++E G+  I  D +  L+
Sbjct: 9  VGKRIKELRISSNLTQDKIAEYLSLNQSMIAKMEKGERNITSDVIEKLS 57


>gi|306844614|ref|ZP_07477201.1| Cro/CI family transcriptional regulator [Brucella sp. BO1]
 gi|306275058|gb|EFM56821.1| Cro/CI family transcriptional regulator [Brucella sp. BO1]
          Length = 470

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R IR E  LTQ  +    G + S+++ +E  +  + +  ++ LA    
Sbjct: 1  MSERKIFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 LDLDSL 66


>gi|284098554|ref|ZP_06385940.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830492|gb|EFC34683.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 399

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S    ++R++  N  R +R  A L+Q E+    G  +  +  +E  +     +  + LA
Sbjct: 1  MSTPKPQQRVV--NRLREMRIAAGLSQGEVAESAGITRQALYAMEKDQYLPGTEVALHLA 58

Query: 71 HTLDTPLWKLL 81
            L T +  L 
Sbjct: 59 DALGTSVEDLF 69


>gi|302552821|ref|ZP_07305163.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
 gi|302470439|gb|EFL33532.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
          Length = 447

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R E  LTQ+++     +  ++IS LE+G+   + D +  LA  L     +L
Sbjct: 9  VIGRRVQRLRVERGLTQRQLAEPV-YTPAYISTLESGRVRPSDDALRHLAGRLGVAFDEL 67


>gi|229021393|ref|ZP_04178016.1| transcriptional regulator, XRE [Bacillus cereus AH1273]
 gi|229023660|ref|ZP_04180152.1| transcriptional regulator, XRE [Bacillus cereus AH1272]
 gi|228737585|gb|EEL88089.1| transcriptional regulator, XRE [Bacillus cereus AH1272]
 gi|228739894|gb|EEL90268.1| transcriptional regulator, XRE [Bacillus cereus AH1273]
          Length = 120

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R +RKE K+TQK++      ++S I   E  +   + D +  +A+        
Sbjct: 2  KTFGNILRELRKEKKITQKDLALTLKLSESTIGMYERNERQPDYDTLNRIANYFKVTTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus
          salivarius SK126]
 gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C150]
 gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus
          salivarius SK126]
 gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. C150]
          Length = 150

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +RK  KLTQ ++       Q   S  E G    +++ ++ LA   DT    LL
Sbjct: 7  FGDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPSLEAVVKLAKLFDTTTDYLL 66


>gi|221068872|ref|ZP_03544977.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
 gi|220713895|gb|EED69263.1| transcriptional regulator, XRE family [Comamonas testosteroni
          KF-1]
          Length = 131

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R+ R+ A+ +Q+++ +     +S IS+LE G    ++  +  L H L     +
Sbjct: 25 KALGTKLRSYRELAQKSQEQLAHEAEVERSRISKLENGHINPSLLTLATLCHCLGITPAE 84

Query: 80 LLK 82
          L +
Sbjct: 85 LFE 87


>gi|189465864|ref|ZP_03014649.1| hypothetical protein BACINT_02226 [Bacteroides intestinalis DSM
          17393]
 gi|189434128|gb|EDV03113.1| hypothetical protein BACINT_02226 [Bacteroides intestinalis DSM
          17393]
          Length = 85

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + KE   TQKE   + G     ++++  GK   +   +  +A  L+  +W+LL
Sbjct: 2  RIKEVIKEKGYTQKEFAEKLGMTTVGLAQIIAGK--PSYTTLEKIADALEVEIWELL 56


>gi|153811873|ref|ZP_01964541.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174]
 gi|149832007|gb|EDM87092.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174]
          Length = 349

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                IR++ KL+Q++     G  +  +S  E G S  NI+ +I+++   +  + ++LK
Sbjct: 12 AKTILKIRQDNKLSQEQFAEIVGVTRQAVSRWEMGISAPNINTLILMSEKFNIQVDEMLK 71


>gi|116054262|ref|YP_788706.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|296387039|ref|ZP_06876538.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa
          PAb1]
 gi|313111831|ref|ZP_07797624.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          aeruginosa 39016]
 gi|115589483|gb|ABJ15498.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          aeruginosa UCBPP-PA14]
 gi|310884126|gb|EFQ42720.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          aeruginosa 39016]
          Length = 184

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +RK   +T + + +    +  ++S++E G S   +D+++ ++  L  P
Sbjct: 15 VRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVP 65


>gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 197

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+E  LTQ+++ +  G     +S+ E G    +++ +  L+  L TP+  LL
Sbjct: 10 IRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTPVETLL 65


>gi|311897916|dbj|BAJ30324.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 285

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +  +R R +     R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L   
Sbjct: 6  NPTVRRRRL-GAELRRLRELKGMTAEEVAGRLMVSQSKISRLENGRRSISQRDVRDLCDV 64

Query: 73 LDTP 76
           +  
Sbjct: 65 YEVE 68


>gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis
          BCW-1]
          Length = 509

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|266625408|ref|ZP_06118343.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi
          DSM 13479]
 gi|288862688|gb|EFC94986.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi
          DSM 13479]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R + ++TQ+++   TG  +  I  LE GK   ++   I ++  ++ P+  L 
Sbjct: 4  FTCNLKKYRLQKEMTQEQLAQITGVRRETIMRLEAGKYNPSLKLAIDISKAVEAPIEALF 63


>gi|228958063|ref|ZP_04119798.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|296502381|ref|YP_003664081.1| XRE family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|228801580|gb|EEM48462.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|296323433|gb|ADH06361.1| XRE family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 404

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229043538|ref|ZP_04191247.1| Transcriptional regulator, Xre [Bacillus cereus AH676]
 gi|228725760|gb|EEL77008.1| Transcriptional regulator, Xre [Bacillus cereus AH676]
          Length = 404

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229144395|ref|ZP_04272800.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
 gi|228639026|gb|EEK95451.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24]
          Length = 404

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|228952164|ref|ZP_04114256.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|229189879|ref|ZP_04316889.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876]
 gi|228593553|gb|EEK51362.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876]
 gi|228807518|gb|EEM54045.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 404

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 200

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R E  +TQ ++    G +   +   E+G+S I  D +  +A+ L      
Sbjct: 6  EQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESRIFFDTVCSIANFLGVTPSY 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|188534357|ref|YP_001908154.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029399|emb|CAO97276.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 187

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D    E+ +      ++R+E   + + +   TG +++ +S +E  +S+     +  L + 
Sbjct: 2  DVNATEKRL-AQRLCDLRREKSWSLETLAELTGISRASLSRIERAESSPTATLLNRLCNA 60

Query: 73 LDTPLWKLL 81
              + +LL
Sbjct: 61 YGLTMSRLL 69


>gi|153932590|ref|YP_001385122.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937327|ref|YP_001388591.1| putative immunity repressor protein [Clostridium botulinum A str.
          Hall]
 gi|152928634|gb|ABS34134.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933241|gb|ABS38740.1| putative Immunity repressor protein [Clostridium botulinum A str.
          Hall]
          Length = 183

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 32/67 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L    L + +     +++ +     TQK + +  G ++S+I ++E G++  +   +  +A
Sbjct: 2  LPKKDLGKLIKKAREYKSKKTYKLFTQKMLADEIGKSRSYICDIERGRTYPSFATLSAIA 61

Query: 71 HTLDTPL 77
             D PL
Sbjct: 62 RACDVPL 68


>gi|111116408|ref|YP_709292.1| putative DNA-binding protein [Pseudomonas putida]
 gi|111036212|dbj|BAF02402.1| putative DNA-binding protein [Pseudomonas putida]
          Length = 99

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  R  R ++ L Q+++    G  ++ + ++E G+S   +  ++ L+  L+     L+
Sbjct: 25 FGNVVREERLKSGLAQEKLALLAGVERAHLGKIERGESLPTLPLIMRLSKALEVKAADLI 84


>gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 150

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++   +  + +R E  LTQKE+      G   ++I ++E G+   ++  ++ ++  L  P
Sbjct: 2  KLKIGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGEQLPSLKILLKISDALSVP 61

Query: 77 LWKLLK 82
          +    +
Sbjct: 62 VASFFQ 67


>gi|154248612|ref|YP_001419570.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154162697|gb|ABS69913.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus
           Py2]
          Length = 224

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R+IR+E  LT  ++      +   +S++E G+ + ++  +  ++  L+ P+  L 
Sbjct: 41  LGVQVRSIRRELDLTVSDLAGAASISVGMLSKIENGQISPSLATLQAISKALNVPITTLF 100


>gi|315035552|gb|EFT47484.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
          Length = 401

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|304407872|ref|ZP_07389523.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304343355|gb|EFM09198.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 125

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-D 74
          L+++       R +R    L+ +++  ++G + S+IS +E G+   + +  I LA  L  
Sbjct: 4  LKDKNKLGQTIRLLRLTNNLSLRDLAEKSGISYSFISSVEKGRFAPSRETTIALAEALKG 63

Query: 75 TPLWKLL 81
            L +LL
Sbjct: 64 ADLNELL 70


>gi|296269505|ref|YP_003652137.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092292|gb|ADG88244.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 411

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTP 76
          E + F    + +R+   ++QKE+    G ++SW+S++E     +  +  +  LA+ L   
Sbjct: 5  EGLTFGARVKELRQRRGMSQKELAAEVGRSESWVSQVERDVQPVERLSVIQALANALGVS 64

Query: 77 LWKLLKP 83
            ++L+P
Sbjct: 65 -VQVLRP 70


>gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 194

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +R E  +TQ  +  R G +   +S+ E G    ++  + +L+  L+     LL+
Sbjct: 7  GSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALEVDTDTLLR 66


>gi|212691942|ref|ZP_03300070.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855]
 gi|212665544|gb|EEB26116.1| hypothetical protein BACDOR_01437 [Bacteroides dorei DSM 17855]
          Length = 142

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           RN R    LTQ+E+  R G  ++ IS++E+GK  + I  +  +   L      +L+
Sbjct: 12 IRNERLRKGLTQEELGKRIGVGKAQISKIESGK-GLTIKTITKVLDALGMSASVILQ 67


>gi|254383920|ref|ZP_04999267.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194342812|gb|EDX23778.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 76

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKE-AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R E A++TQ ++  R G  +  +  +E G+ + +++    +A     PL ++ +
Sbjct: 8  NRIRVLRFEHAEMTQADLAERIGVTRQTVIAIEKGRYSPSLETAFRIARVFAVPLEQVFQ 67


>gi|160942938|ref|ZP_02090177.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445839|gb|EDP22842.1| hypothetical protein FAEPRAM212_00415 [Faecalibacterium
          prausnitzii M21/2]
          Length = 85

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP R+     +   +           +  R E  +TQ  +    G ++  I+ +E G+  
Sbjct: 11 MPTRQERSVSMPKNL---------KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYN 61

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            I+    +   LD  L +L 
Sbjct: 62 PTINLCRSICKILDKTLDELF 82


>gi|319425493|gb|ADV53567.1| Cupin 2 conserved barrel domain protein [Shewanella putrefaciens
          200]
          Length = 182

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L    
Sbjct: 4  GASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62


>gi|83589232|ref|YP_429241.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572146|gb|ABC18698.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 100

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R +  LTQ+E+  +TG  QS IS LE+G+   ++ ++  ++  L   +    
Sbjct: 31 VARAVIKLRLDYGLTQEELAQKTGVPQSVISRLESGRHLPSLRSLEKISKKLGLQIRLDF 90

Query: 82 KP 83
           P
Sbjct: 91 IP 92


>gi|26989587|ref|NP_745012.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24984467|gb|AAN68476.1|AE016480_3 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 199

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+    EP  +              R +RK   +T  E+   +     +IS+LE   S  
Sbjct: 5  PQPPASEPGGAAP-----QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYP 59

Query: 62 NIDNMIILAHTLDT 75
          +I  +  +A +L  
Sbjct: 60 SIPALFNIARSLGV 73


>gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661]
 gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 79

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+++  + G ++  I  +E GK   ++     +A      +  + 
Sbjct: 16 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 73


>gi|313585026|gb|ADR70745.1| hypothetical transcriptional repressor [Xanthomonas citri subsp.
          citri]
          Length = 108

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    +  R    L+QKE+  R G     A   +++ E GK    ++    LA  L  P
Sbjct: 11 FARRLQQARLHTGLSQKELGIRAGLDPYVASPRVNQYERGKHEPKLETAERLAQALGIP 69


>gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus
          1_2_62CV]
 gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus
          1_2_62CV]
          Length = 133

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++        ++RK   +TQ E+  + G     +S+ E   S  +I+ +  LA   DT +
Sbjct: 2  KKQTLGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSV 61

Query: 78 WKLLK 82
           +L++
Sbjct: 62 DELMQ 66


>gi|313116063|ref|ZP_07801487.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310621660|gb|EFQ05191.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 148

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R     TQK++ ++    QS +S  E+G     ID +I +A  L   +   LKP
Sbjct: 42 RMAKGWTQKDLADKMRVKQSLVSRWESGDCNYTIDTLIDIADALGLSVQCPLKP 95


>gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKE-AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R + A+LTQ E+  R G  +  +  +E G+ + +++    +AH    PL  + +
Sbjct: 8  NRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRYSPSLELAFQIAHVFGVPLADVFQ 67


>gi|226366151|ref|YP_002783934.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226244641|dbj|BAH54989.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 128

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R  R     T +E+ N    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDALDVPLS 65

Query: 79 KLL 81
           +L
Sbjct: 66 DVL 68


>gi|239617008|ref|YP_002940330.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF
          19.5.1]
 gi|239505839|gb|ACR79326.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF
          19.5.1]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +R     +TQ+E+  R G  +  I  +E GK   ++   + +A  L   + +L +
Sbjct: 5  IKKVRITKGEITQEELARRVGVTRQTIIYIEKGKFNPSVKLALKIAKVLGCSVEELFE 62


>gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2]
 gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2]
          Length = 516

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +R++  L+   +   +G ++S +  +E G+    +  +  +A+ L     +L+
Sbjct: 5  VGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVTFGELI 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 830

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ RK   LT  E++ +TG ++S++SE+E G   I   + +     L      LL
Sbjct: 573 GERLRSARKAVGLTLDELKVKTGLSKSYLSEMENGAKEIQRKHAVGFGPVLGVEPSWLL 631


>gi|330722216|gb|EGH00105.1| Transcriptional regulator2C MerR family [gamma proteobacterium
          IMCC2047]
          Length = 200

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R    L   ++ +  G ++  +S +E  + + ++D +  L  +L   L  L 
Sbjct: 17 LGAAIRRERVSQGLKIADVASLAGISKGMLSRIENAQVSTSLDTLQRLCDSLGLHLSNLF 76

Query: 82 K 82
          K
Sbjct: 77 K 77


>gi|327490523|gb|EGF22304.1| transcriptional regulator [Streptococcus sanguinis SK1058]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE K++Q E+    G ++  I+ +E  K    ++  I LA  LDT L  L 
Sbjct: 2  NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59


>gi|324009966|gb|EGB79185.1| helix-turn-helix protein [Escherichia coli MS 57-2]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|323963980|gb|EGB59472.1| helix-turn-helix protein [Escherichia coli M863]
 gi|327254078|gb|EGE65707.1| helix-turn-helix family protein [Escherichia coli STEC_7v]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|311033076|ref|ZP_07711166.1| hypothetical protein Bm3-1_21479 [Bacillus sp. m3-13]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +++RK AK+TQ+++  + G ++  I  +E+GK   +++    ++   D  + ++ 
Sbjct: 3  NRIKDLRKAAKMTQEDLAVQVGVSRQSIIAIESGKYNPSLELAYNISKVFDCIIEEVF 60


>gi|309701701|emb|CBJ01009.1| putative transcriptional regulator [Escherichia coli ETEC H10407]
 gi|323937517|gb|EGB33787.1| helix-turn-helix protein [Escherichia coli E1520]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|307308819|ref|ZP_07588507.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|306900624|gb|EFN31236.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 472

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      R++R   +LTQ +   R G + S+++++E  +  ++   ++ LA      + 
Sbjct: 5  KLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64

Query: 79 KL 80
          +L
Sbjct: 65 EL 66


>gi|306813594|ref|ZP_07447777.1| putative DNA-binding transcriptional regulator [Escherichia coli
          NC101]
 gi|305853041|gb|EFM53485.1| putative DNA-binding transcriptional regulator [Escherichia coli
          NC101]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|300939145|ref|ZP_07153832.1| helix-turn-helix protein [Escherichia coli MS 21-1]
 gi|300455960|gb|EFK19453.1| helix-turn-helix protein [Escherichia coli MS 21-1]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|301017870|ref|ZP_07182512.1| helix-turn-helix protein [Escherichia coli MS 69-1]
 gi|300399967|gb|EFJ83505.1| helix-turn-helix protein [Escherichia coli MS 69-1]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|294794616|ref|ZP_06759752.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 3_1_44]
 gi|294454946|gb|EFG23319.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 3_1_44]
          Length = 153

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  L+      L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|293409776|ref|ZP_06653352.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470244|gb|EFF12728.1| conserved hypothetical protein [Escherichia coli B354]
 gi|323976926|gb|EGB72013.1| helix-turn-helix protein [Escherichia coli TW10509]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|293414771|ref|ZP_06657420.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185]
 gi|291434829|gb|EFF07802.1| HTH-type transcriptional regulator ydcN [Escherichia coli B185]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|289426044|ref|ZP_06427791.1| cupin domain protein [Propionibacterium acnes SK187]
 gi|289153587|gb|EFD02301.1| cupin domain protein [Propionibacterium acnes SK187]
          Length = 288

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 29/83 (34%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P +      +               +  R   + T  ++ +  G ++  +  +E G   
Sbjct: 85  LPTKCSIMHCMDTGAEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144

Query: 61  INIDNMIILAHTLDTPLWKLLKP 83
             +  ++ L+  L   L  L++P
Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167


>gi|284921317|emb|CBG34385.1| putative transcriptional regulator [Escherichia coli 042]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|281178569|dbj|BAI54899.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|271963706|ref|YP_003337902.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270506881|gb|ACZ85159.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 119

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R +R     T +E+      +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 5  RQLLGDVLRRLRVRQSRTLREVSTLARVSLGYLSEVERGQKEASSELLASICGALGVPLS 64

Query: 79 KLLK 82
          ++L+
Sbjct: 65 QVLR 68


>gi|218704902|ref|YP_002412421.1| putative DNA-binding transcriptional regulator [Escherichia coli
          UMN026]
 gi|293404913|ref|ZP_06648905.1| HTH-type transcriptional regulator ydcN [Escherichia coli
          FVEC1412]
 gi|298380556|ref|ZP_06990155.1| HTH-type transcriptional regulator ydcN [Escherichia coli
          FVEC1302]
 gi|300900069|ref|ZP_07118264.1| helix-turn-helix protein [Escherichia coli MS 198-1]
 gi|331646712|ref|ZP_08347815.1| putative oxidoreductase/putative repressor [Escherichia coli
          M605]
 gi|218431999|emb|CAR12884.1| putative DNA-binding transcriptional regulator [Escherichia coli
          UMN026]
 gi|291427121|gb|EFF00148.1| HTH-type transcriptional regulator ydcN [Escherichia coli
          FVEC1412]
 gi|298277998|gb|EFI19512.1| HTH-type transcriptional regulator ydcN [Escherichia coli
          FVEC1302]
 gi|300356415|gb|EFJ72285.1| helix-turn-helix protein [Escherichia coli MS 198-1]
 gi|323187286|gb|EFZ72597.1| helix-turn-helix family protein [Escherichia coli RN587/1]
 gi|330911245|gb|EGH39755.1| transcriptional regulator yidN, Cro/CI family [Escherichia coli
          AA86]
 gi|331045464|gb|EGI17591.1| putative oxidoreductase/putative repressor [Escherichia coli
          M605]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|218689364|ref|YP_002397576.1| putative DNA-binding transcriptional regulator [Escherichia coli
          ED1a]
 gi|218426928|emb|CAR07787.2| putative DNA-binding transcriptional regulator [Escherichia coli
          ED1a]
 gi|315298577|gb|EFU57832.1| helix-turn-helix protein [Escherichia coli MS 16-3]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|218553960|ref|YP_002386873.1| putative DNA-binding transcriptional regulator [Escherichia coli
          IAI1]
 gi|256018347|ref|ZP_05432212.1| putative DNA-binding transcriptional regulator [Shigella sp. D9]
 gi|300901847|ref|ZP_07119882.1| helix-turn-helix protein [Escherichia coli MS 84-1]
 gi|301306843|ref|ZP_07212892.1| helix-turn-helix protein [Escherichia coli MS 124-1]
 gi|332279399|ref|ZP_08391812.1| conserved hypothetical protein [Shigella sp. D9]
 gi|218360728|emb|CAQ98289.1| putative DNA-binding transcriptional regulator [Escherichia coli
          IAI1]
 gi|300406059|gb|EFJ89597.1| helix-turn-helix protein [Escherichia coli MS 84-1]
 gi|300837928|gb|EFK65688.1| helix-turn-helix protein [Escherichia coli MS 124-1]
 gi|315253499|gb|EFU33467.1| helix-turn-helix protein [Escherichia coli MS 85-1]
 gi|332101751|gb|EGJ05097.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|218694976|ref|YP_002402643.1| putative DNA-binding transcriptional regulator [Escherichia coli
          55989]
 gi|300823240|ref|ZP_07103372.1| helix-turn-helix protein [Escherichia coli MS 119-7]
 gi|331667806|ref|ZP_08368670.1| putative oxidoreductase/putative repressor [Escherichia coli
          TA271]
 gi|331677280|ref|ZP_08377962.1| putative oxidoreductase/putative repressor [Escherichia coli
          H591]
 gi|218351708|emb|CAU97423.1| putative DNA-binding transcriptional regulator [Escherichia coli
          55989]
 gi|300524204|gb|EFK45273.1| helix-turn-helix protein [Escherichia coli MS 119-7]
 gi|323170076|gb|EFZ55731.1| helix-turn-helix family protein [Escherichia coli LT-68]
 gi|331065391|gb|EGI37286.1| putative oxidoreductase/putative repressor [Escherichia coli
          TA271]
 gi|331075131|gb|EGI46444.1| putative oxidoreductase/putative repressor [Escherichia coli
          H591]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|215486671|ref|YP_002329102.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O127:H6 str. E2348/69]
 gi|312969257|ref|ZP_07783462.1| helix-turn-helix family protein [Escherichia coli 2362-75]
 gi|215264743|emb|CAS09124.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O127:H6 str. E2348/69]
 gi|312286144|gb|EFR14059.1| helix-turn-helix family protein [Escherichia coli 2362-75]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|295131728|ref|YP_003582391.1| cupin domain protein [Propionibacterium acnes SK137]
 gi|291376789|gb|ADE00644.1| cupin domain protein [Propionibacterium acnes SK137]
          Length = 288

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 29/83 (34%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P +      +               +  R   + T  ++ +  G ++  +  +E G   
Sbjct: 85  LPTKCSIMHCMDTGAEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144

Query: 61  INIDNMIILAHTLDTPLWKLLKP 83
             +  ++ L+  L   L  L++P
Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167


>gi|209918706|ref|YP_002292790.1| hypothetical protein ECSE_1515 [Escherichia coli SE11]
 gi|209911965|dbj|BAG77039.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|324021052|gb|EGB90271.1| helix-turn-helix protein [Escherichia coli MS 117-3]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|170680755|ref|YP_001743794.1| DNA-binding protein [Escherichia coli SMS-3-5]
 gi|170518473|gb|ACB16651.1| DNA-binding protein [Escherichia coli SMS-3-5]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|91210676|ref|YP_540662.1| hypothetical protein UTI89_C1653 [Escherichia coli UTI89]
 gi|117623680|ref|YP_852593.1| hypothetical protein APECO1_579 [Escherichia coli APEC O1]
 gi|218558366|ref|YP_002391279.1| DNA-binding transcriptional regulator [Escherichia coli S88]
 gi|237705412|ref|ZP_04535893.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91072250|gb|ABE07131.1| hypothetical protein YdcN [Escherichia coli UTI89]
 gi|115512804|gb|ABJ00879.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365135|emb|CAR02845.1| putative DNA-binding transcriptional regulator [Escherichia coli
          S88]
 gi|222033183|emb|CAP75923.1| Uncharacterized HTH-type transcriptional regulator [Escherichia
          coli LF82]
 gi|226900169|gb|EEH86428.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294493300|gb|ADE92056.1| DNA-binding protein [Escherichia coli IHE3034]
 gi|307627046|gb|ADN71350.1| putative DNA-binding transcriptional regulator [Escherichia coli
          UM146]
 gi|312946016|gb|ADR26843.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O83:H1 str. NRG 857C]
 gi|315289769|gb|EFU49159.1| helix-turn-helix protein [Escherichia coli MS 110-3]
 gi|323952682|gb|EGB48551.1| helix-turn-helix protein [Escherichia coli H252]
 gi|323956844|gb|EGB52577.1| helix-turn-helix protein [Escherichia coli H263]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|82777001|ref|YP_403350.1| hypothetical protein SDY_1742 [Shigella dysenteriae Sd197]
 gi|81241149|gb|ABB61859.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|74312212|ref|YP_310631.1| hypothetical protein SSON_1704 [Shigella sonnei Ss046]
 gi|73855689|gb|AAZ88396.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323169618|gb|EFZ55286.1| helix-turn-helix family protein [Shigella sonnei 53G]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|15614377|ref|NP_242680.1| hypothetical protein BH1814 [Bacillus halodurans C-125]
 gi|10174432|dbj|BAB05533.1| BH1814 [Bacillus halodurans C-125]
          Length = 297

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76
          E +   +  + +R+   L+Q+++    G   Q+ IS +E  K+T  +D    +A  L  P
Sbjct: 2  ETLSVGHKIKTLRQSLGLSQRDLAE--GICTQALISHIEKNKTTPTVDVFFNIAKKLGAP 59

Query: 77 LWKLLK 82
              L+
Sbjct: 60 ADYFLE 65


>gi|15801709|ref|NP_287727.1| hypothetical protein Z2285 [Escherichia coli O157:H7 EDL933]
 gi|15831292|ref|NP_310065.1| hypothetical protein ECs2037 [Escherichia coli O157:H7 str.
          Sakai]
 gi|168748967|ref|ZP_02773989.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113]
 gi|168759171|ref|ZP_02784178.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401]
 gi|168761476|ref|ZP_02786483.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501]
 gi|168769035|ref|ZP_02794042.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486]
 gi|168774335|ref|ZP_02799342.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196]
 gi|168781404|ref|ZP_02806411.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076]
 gi|168788512|ref|ZP_02813519.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869]
 gi|168799439|ref|ZP_02824446.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508]
 gi|195936926|ref|ZP_03082308.1| hypothetical protein EscherichcoliO157_10762 [Escherichia coli
          O157:H7 str. EC4024]
 gi|208810881|ref|ZP_03252714.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206]
 gi|208815156|ref|ZP_03256335.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045]
 gi|208818249|ref|ZP_03258569.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042]
 gi|209397754|ref|YP_002270440.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115]
 gi|217329087|ref|ZP_03445167.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254792977|ref|YP_003077814.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. TW14359]
 gi|261224380|ref|ZP_05938661.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261257365|ref|ZP_05949898.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. FRIK966]
 gi|291282537|ref|YP_003499355.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615]
 gi|12515268|gb|AAG56341.1|AE005362_11 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361504|dbj|BAB35461.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187770139|gb|EDU33983.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016678|gb|EDU54800.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4113]
 gi|189000937|gb|EDU69923.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4076]
 gi|189354230|gb|EDU72649.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361883|gb|EDU80302.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4486]
 gi|189368111|gb|EDU86527.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4501]
 gi|189371782|gb|EDU90198.1| DNA-binding protein [Escherichia coli O157:H7 str. EC869]
 gi|189378128|gb|EDU96544.1| DNA-binding protein [Escherichia coli O157:H7 str. EC508]
 gi|208724387|gb|EDZ74095.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731804|gb|EDZ80492.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4045]
 gi|208738372|gb|EDZ86054.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4042]
 gi|209159154|gb|ACI36587.1| DNA-binding protein [Escherichia coli O157:H7 str. EC4115]
 gi|209771028|gb|ACI83826.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771030|gb|ACI83827.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771032|gb|ACI83828.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771034|gb|ACI83829.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|209771036|gb|ACI83830.1| hypothetical protein ECs2037 [Escherichia coli]
 gi|217317526|gb|EEC25954.1| DNA-binding protein [Escherichia coli O157:H7 str. TW14588]
 gi|254592377|gb|ACT71738.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. TW14359]
 gi|290762410|gb|ADD56371.1| DNA-binding protein [Escherichia coli O55:H7 str. CB9615]
 gi|320190111|gb|EFW64762.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
          O157:H7 str. EC1212]
 gi|320637032|gb|EFX06893.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. G5101]
 gi|320642399|gb|EFX11685.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O157:H- str. 493-89]
 gi|320647755|gb|EFX16500.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O157:H- str. H 2687]
 gi|320653362|gb|EFX21499.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O55:H7 str. 3256-97 TW 07815]
 gi|320659028|gb|EFX26651.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O55:H7 str. USDA 5905]
 gi|320663862|gb|EFX31090.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O157:H7 str. LSU-61]
 gi|326340694|gb|EGD64491.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
          O157:H7 str. 1044]
 gi|326340945|gb|EGD64738.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
          O157:H7 str. 1125]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|194431949|ref|ZP_03064239.1| DNA-binding protein [Shigella dysenteriae 1012]
 gi|331682878|ref|ZP_08383497.1| putative oxidoreductase/putative repressor [Escherichia coli
          H299]
 gi|194419857|gb|EDX35936.1| DNA-binding protein [Shigella dysenteriae 1012]
 gi|320182531|gb|EFW57422.1| Transcriptional regulator yidN, Cro/CI family [Shigella boydii
          ATCC 9905]
 gi|331080509|gb|EGI51688.1| putative oxidoreductase/putative repressor [Escherichia coli
          H299]
 gi|332094663|gb|EGI99708.1| helix-turn-helix family protein [Shigella dysenteriae 155-74]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|148548035|ref|YP_001268137.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512093|gb|ABQ78953.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 199

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+    EP  +              R +RK   +T  E+   +     +IS+LE   S  
Sbjct: 5  PQPPASEPGGAAP-----QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYP 59

Query: 62 NIDNMIILAHTLDT 75
          +I  +  +A +L  
Sbjct: 60 SIPALFNIARSLGV 73


>gi|188494052|ref|ZP_03001322.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia
          coli 53638]
 gi|331652693|ref|ZP_08353704.1| putative oxidoreductase/putative repressor [Escherichia coli
          M718]
 gi|331662905|ref|ZP_08363815.1| putative oxidoreductase/putative repressor [Escherichia coli
          TA143]
 gi|188489251|gb|EDU64354.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia
          coli 53638]
 gi|331049799|gb|EGI21865.1| putative oxidoreductase/putative repressor [Escherichia coli
          M718]
 gi|331058704|gb|EGI30681.1| putative oxidoreductase/putative repressor [Escherichia coli
          TA143]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|193062540|ref|ZP_03043634.1| DNA-binding protein [Escherichia coli E22]
 gi|260843745|ref|YP_003221523.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O103:H2 str. 12009]
 gi|192931662|gb|EDV84262.1| DNA-binding protein [Escherichia coli E22]
 gi|257758892|dbj|BAI30389.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O103:H2 str. 12009]
 gi|323163586|gb|EFZ49411.1| helix-turn-helix family protein [Escherichia coli E128010]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|26247719|ref|NP_753759.1| hypothetical protein c1858 [Escherichia coli CFT073]
 gi|110641615|ref|YP_669345.1| hypothetical protein ECP_1437 [Escherichia coli 536]
 gi|191172851|ref|ZP_03034387.1| DNA-binding protein [Escherichia coli F11]
 gi|227886179|ref|ZP_04003984.1| possible transcriptional regulator [Escherichia coli 83972]
 gi|300975406|ref|ZP_07172980.1| helix-turn-helix protein [Escherichia coli MS 200-1]
 gi|300976462|ref|ZP_07173445.1| helix-turn-helix protein [Escherichia coli MS 45-1]
 gi|301046759|ref|ZP_07193881.1| helix-turn-helix protein [Escherichia coli MS 185-1]
 gi|331657437|ref|ZP_08358399.1| putative oxidoreductase/putative repressor [Escherichia coli
          TA206]
 gi|26108121|gb|AAN80321.1|AE016760_180 Hypothetical protein ydcN [Escherichia coli CFT073]
 gi|47600733|emb|CAE55854.1| hypothetical protein YdcN [Escherichia coli Nissle 1917]
 gi|110343207|gb|ABG69444.1| hypothetical protein YdcN (putative DNA-binding protein)
          [Escherichia coli 536]
 gi|190906857|gb|EDV66460.1| DNA-binding protein [Escherichia coli F11]
 gi|227836844|gb|EEJ47310.1| possible transcriptional regulator [Escherichia coli 83972]
 gi|300301320|gb|EFJ57705.1| helix-turn-helix protein [Escherichia coli MS 185-1]
 gi|300308732|gb|EFJ63252.1| helix-turn-helix protein [Escherichia coli MS 200-1]
 gi|300410034|gb|EFJ93572.1| helix-turn-helix protein [Escherichia coli MS 45-1]
 gi|307553442|gb|ADN46217.1| putative HTH-type transcriptional regulator YdcN [Escherichia
          coli ABU 83972]
 gi|315290641|gb|EFU50013.1| helix-turn-helix protein [Escherichia coli MS 153-1]
 gi|320195607|gb|EFW70232.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
          WV_060327]
 gi|324015156|gb|EGB84375.1| helix-turn-helix protein [Escherichia coli MS 60-1]
 gi|331055685|gb|EGI27694.1| putative oxidoreductase/putative repressor [Escherichia coli
          TA206]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|16129393|ref|NP_415951.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K-12 substr. MG1655]
 gi|89108277|ref|AP_002057.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K-12 substr. W3110]
 gi|157157044|ref|YP_001462706.1| DNA-binding protein [Escherichia coli E24377A]
 gi|157160911|ref|YP_001458229.1| DNA-binding protein [Escherichia coli HS]
 gi|170020236|ref|YP_001725190.1| XRE family transcriptional regulator [Escherichia coli ATCC 8739]
 gi|170081108|ref|YP_001730428.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
          substr. DH10B]
 gi|191164983|ref|ZP_03026827.1| DNA-binding protein [Escherichia coli B7A]
 gi|193066983|ref|ZP_03047952.1| DNA-binding protein [Escherichia coli E110019]
 gi|194436585|ref|ZP_03068686.1| DNA-binding protein [Escherichia coli 101-1]
 gi|238900660|ref|YP_002926456.1| putative DNA-binding transcriptional regulator [Escherichia coli
          BW2952]
 gi|253773591|ref|YP_003036422.1| XRE family transcriptional regulator [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|254161493|ref|YP_003044601.1| putative DNA-binding transcriptional regulator [Escherichia coli
          B str. REL606]
 gi|256022888|ref|ZP_05436753.1| predicted DNA-binding transcriptional regulator [Escherichia sp.
          4_1_40B]
 gi|260855159|ref|YP_003229050.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O26:H11 str. 11368]
 gi|260867878|ref|YP_003234280.1| putative DNA-binding transcriptional regulator [Escherichia coli
          O111:H- str. 11128]
 gi|293433816|ref|ZP_06662244.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088]
 gi|297521909|ref|ZP_06940295.1| putative DNA-binding transcriptional regulator [Escherichia coli
          OP50]
 gi|300921799|ref|ZP_07137960.1| helix-turn-helix protein [Escherichia coli MS 182-1]
 gi|300928985|ref|ZP_07144486.1| helix-turn-helix protein [Escherichia coli MS 187-1]
 gi|300948113|ref|ZP_07162247.1| helix-turn-helix protein [Escherichia coli MS 116-1]
 gi|300958230|ref|ZP_07170381.1| helix-turn-helix protein [Escherichia coli MS 175-1]
 gi|301020147|ref|ZP_07184274.1| helix-turn-helix protein [Escherichia coli MS 196-1]
 gi|301326006|ref|ZP_07219420.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|301645375|ref|ZP_07245319.1| helix-turn-helix protein [Escherichia coli MS 146-1]
 gi|307138086|ref|ZP_07497442.1| putative DNA-binding transcriptional regulator [Escherichia coli
          H736]
 gi|307309783|ref|ZP_07589433.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|309794168|ref|ZP_07688592.1| helix-turn-helix protein [Escherichia coli MS 145-7]
 gi|312971601|ref|ZP_07785776.1| helix-turn-helix family protein [Escherichia coli 1827-70]
 gi|331642010|ref|ZP_08343145.1| putative oxidoreductase/putative repressor [Escherichia coli
          H736]
 gi|2829660|sp|P77626|YDCN_ECOLI RecName: Full=Uncharacterized HTH-type transcriptional regulator
          ydcN
 gi|1742340|dbj|BAA15062.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K12 substr. W3110]
 gi|1787704|gb|AAC74516.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K-12 substr. MG1655]
 gi|157066591|gb|ABV05846.1| DNA-binding protein [Escherichia coli HS]
 gi|157079074|gb|ABV18782.1| DNA-binding protein [Escherichia coli E24377A]
 gi|169755164|gb|ACA77863.1| transcriptional regulator, XRE family [Escherichia coli ATCC
          8739]
 gi|169888943|gb|ACB02650.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          str. K-12 substr. DH10B]
 gi|190904755|gb|EDV64460.1| DNA-binding protein [Escherichia coli B7A]
 gi|192959573|gb|EDV90007.1| DNA-binding protein [Escherichia coli E110019]
 gi|194424617|gb|EDX40603.1| DNA-binding protein [Escherichia coli 101-1]
 gi|238862307|gb|ACR64305.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          BW2952]
 gi|242377187|emb|CAQ31919.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          BL21(DE3)]
 gi|253324635|gb|ACT29237.1| transcriptional regulator, XRE family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253973394|gb|ACT39065.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          B str. REL606]
 gi|253977605|gb|ACT43275.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          BL21(DE3)]
 gi|257753808|dbj|BAI25310.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O26:H11 str. 11368]
 gi|257764234|dbj|BAI35729.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          O111:H- str. 11128]
 gi|260449440|gb|ACX39862.1| transcriptional regulator, XRE family [Escherichia coli DH1]
 gi|291324635|gb|EFE64057.1| HTH-type transcriptional regulator ydcN [Escherichia coli B088]
 gi|299881904|gb|EFI90115.1| helix-turn-helix protein [Escherichia coli MS 196-1]
 gi|300315108|gb|EFJ64892.1| helix-turn-helix protein [Escherichia coli MS 175-1]
 gi|300421824|gb|EFK05135.1| helix-turn-helix protein [Escherichia coli MS 182-1]
 gi|300452356|gb|EFK15976.1| helix-turn-helix protein [Escherichia coli MS 116-1]
 gi|300463050|gb|EFK26543.1| helix-turn-helix protein [Escherichia coli MS 187-1]
 gi|300847223|gb|EFK74983.1| helix-turn-helix protein [Escherichia coli MS 78-1]
 gi|301076329|gb|EFK91135.1| helix-turn-helix protein [Escherichia coli MS 146-1]
 gi|306909501|gb|EFN39995.1| transcriptional regulator, XRE family [Escherichia coli W]
 gi|308122073|gb|EFO59335.1| helix-turn-helix protein [Escherichia coli MS 145-7]
 gi|310336198|gb|EFQ01398.1| helix-turn-helix family protein [Escherichia coli 1827-70]
 gi|315060712|gb|ADT75039.1| predicted DNA-binding transcriptional regulator [Escherichia coli
          W]
 gi|315136074|dbj|BAJ43233.1| putative DNA-binding transcriptional regulator [Escherichia coli
          DH1]
 gi|315619613|gb|EFV00138.1| helix-turn-helix family protein [Escherichia coli 3431]
 gi|320187371|gb|EFW62064.1| Transcriptional regulator yidN, Cro/CI family [Shigella flexneri
          CDC 796-83]
 gi|320199440|gb|EFW74031.1| Transcriptional regulator yidN, Cro/CI family [Escherichia coli
          EC4100B]
 gi|323157392|gb|EFZ43506.1| helix-turn-helix family protein [Escherichia coli EPECa14]
 gi|323178085|gb|EFZ63664.1| helix-turn-helix family protein [Escherichia coli 1180]
 gi|323185431|gb|EFZ70792.1| helix-turn-helix family protein [Escherichia coli 1357]
 gi|323378722|gb|ADX50990.1| transcriptional regulator, XRE family [Escherichia coli KO11]
 gi|323942192|gb|EGB38365.1| helix-turn-helix protein [Escherichia coli E482]
 gi|323947787|gb|EGB43789.1| helix-turn-helix protein [Escherichia coli H120]
 gi|323962367|gb|EGB57953.1| helix-turn-helix protein [Escherichia coli H489]
 gi|323973651|gb|EGB68830.1| helix-turn-helix protein [Escherichia coli TA007]
 gi|324117665|gb|EGC11569.1| helix-turn-helix protein [Escherichia coli E1167]
 gi|331038808|gb|EGI11028.1| putative oxidoreductase/putative repressor [Escherichia coli
          H736]
 gi|332343099|gb|AEE56433.1| helix-turn-helix family protein YdcN [Escherichia coli UMNK88]
          Length = 178

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|317470497|ref|ZP_07929885.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp.
          3_2_56FAA]
 gi|316902012|gb|EFV23938.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp.
          3_2_56FAA]
          Length = 149

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N+  N RK++ L+Q+++  + G ++  IS+ ETG++  +I     LA      L +L+
Sbjct: 3  LGNSLFNARKKSNLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDELI 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|303229040|ref|ZP_07315846.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
 gi|302516251|gb|EFL58187.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella atypica ACS-134-V-Col7a]
          Length = 91

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R+ A L+Q+E+  R+G  QS I+ +E G    +ID +  +A  L+ 
Sbjct: 38 RARENAGLSQRELAERSGVPQSTIARIERG-YNTSIDTLSKIAFALNK 84


>gi|302524660|ref|ZP_07277002.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302433555|gb|EFL05371.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R++  L+   +  R+G +++ I ++E G++      +  LA  L   L +L+
Sbjct: 9  LAAAVREARQDRALSAGVLAERSGVSRAMIGKIERGEAQPTAVLLSRLATALGLTLSELI 68


>gi|229492212|ref|ZP_04386020.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
 gi|229320838|gb|EEN86651.1| putative transcriptional regulator [Rhodococcus erythropolis
          SK121]
          Length = 292

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   + R  R+ + L+ +E+  R   + + +S +ETGK+ +++D +  +   L      L
Sbjct: 9  LIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDAL 68

Query: 81 L 81
          L
Sbjct: 69 L 69


>gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758]
 gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758]
          Length = 109

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N F+N+R +   TQ ++ +  G ++S +S  ETG    +++ +  +A   +  +  LL
Sbjct: 4  FHNIFKNLRMQNHYTQGQMADLLGISRSAVSMYETGNREPDLETLEKIAKFFNVDMNYLL 63


>gi|163838939|ref|YP_001623344.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952415|gb|ABY21930.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 551

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           P  +R   +       + +      R++RK A +T  ++      A S +S +E GK   
Sbjct: 62  PGTERAASND----EIDVISLGRRVRHLRKSANMTLDDLGLMVDAAPSQLSMIENGKREP 117

Query: 62  NIDNMIILAHTLDTPLWKLL 81
            +  +  LA +L   + +LL
Sbjct: 118 KLSLLNSLAKSLGVSIEQLL 137


>gi|77406024|ref|ZP_00783101.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae H36B]
 gi|77175360|gb|EAO78152.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae H36B]
          Length = 75

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++   TQK +  +  F  S  S++E G+  ++ D +I L++  +     LL
Sbjct: 4  RRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLL 61


>gi|22537400|ref|NP_688251.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|76798004|ref|ZP_00780262.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 18RS21]
 gi|22534275|gb|AAN00124.1|AE014249_5 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
 gi|76586627|gb|EAO63127.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 18RS21]
 gi|157419703|gb|ABV55392.1| transcriptional regulator, Cro/CI family protein [Streptococcus
          dysgalactiae subsp. equisimilis]
 gi|323127163|gb|ADX24460.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 74

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++   TQK +  +  F  S  S++E G+  ++ D +I L++  +     LL
Sbjct: 3  RRLRDLREDNDFTQKYVAEKLSFTHSAYSKIERGERILSADVIIKLSNLYNVSTDYLL 60


>gi|15595732|ref|NP_249226.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099522|ref|ZP_01363440.1| hypothetical protein PaerPA_01000534 [Pseudomonas aeruginosa
          PACS2]
 gi|218889277|ref|YP_002438141.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254237245|ref|ZP_04930568.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719]
 gi|254243628|ref|ZP_04936950.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192]
 gi|9946402|gb|AAG03924.1|AE004490_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|126169176|gb|EAZ54687.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719]
 gi|126197006|gb|EAZ61069.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192]
 gi|218769500|emb|CAW25260.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 184

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +RK   +T + + +    +  ++S++E G S   +D+++ ++  L  P
Sbjct: 15 VRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVP 65


>gi|325964657|ref|YP_004242563.1| hypothetical protein Asphe3_33230 [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|323470744|gb|ADX74429.1| Helix-turn-helix protein [Arthrobacter phenanthrenivorans Sphe3]
          Length = 421

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    R  R E  LTQ E+     ++ S+IS LETG+     + +  LA  L+     L
Sbjct: 5  FGEKLRAERLERGLTQAELGKDL-YSPSYISLLETGRREPTAEVIEELARRLELAPKAL 62


>gi|313499113|gb|ADR60479.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 199

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+    EP  +              R +RK   +T  E+   +     +IS+LE   S  
Sbjct: 5  PQPPASEPGGAAP-----QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYP 59

Query: 62 NIDNMIILAHTLDT 75
          +I  +  +A +L  
Sbjct: 60 SIPALFNIARSLGV 73


>gi|320105393|ref|YP_004180983.1| Cupin 2 barrel domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319923914|gb|ADV80989.1| Cupin 2 conserved barrel domain protein [Terriglobus saanensis
          SP1PR4]
          Length = 233

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E   ++A + E+ I     + +R +  +   E+   TG + S++S+LETG+    + N+ 
Sbjct: 15 ESEDAEAFITEKRI-GERIKALRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLA 73

Query: 68 ILAHTLDTPLWKLLKP 83
           +A      L    +P
Sbjct: 74 RIAMVFSKDLNYFFEP 89


>gi|266620773|ref|ZP_06113708.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288867593|gb|EFC99891.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 113

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R       R  RKE  ++  E+  + G A  +  ++E G   ++I+ ++ LAH LD  +
Sbjct: 4  DRAGVAKRIRQRRKELGMSSAEVAGKIGRAVHYYGDIERGTCGMSIETLLDLAHYLDLSV 63

Query: 78 WKLL 81
            +L
Sbjct: 64 DYIL 67


>gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 199

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                 R +RK   +T  E+   +     +IS+LE   S  +I  +  +A +L  
Sbjct: 18 QFLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGV 73


>gi|108757425|ref|YP_634451.1| DNA-binding protein [Myxococcus xanthus DK 1622]
 gi|108461305|gb|ABF86490.1| DNA-binding protein [Myxococcus xanthus DK 1622]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R++R+    TQ ++    G  ++  + LE+G +   +  +  +A  L   L +L+
Sbjct: 10 LARNIRSLRETRGATQAQLSRLAGVPRATWAHLESGAANPTLSVLHRVAAALQVSLEELI 69


>gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens]
          Length = 182

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++R    ++Q+E+  R G   S IS +E+  S  ++  +  +   +   L +  
Sbjct: 6  GGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGLAEFF 64


>gi|52079512|ref|YP_078303.1| putative transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|52784877|ref|YP_090706.1| hypothetical protein BLi01105 [Bacillus licheniformis ATCC 14580]
 gi|52002723|gb|AAU22665.1| putative transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|52347379|gb|AAU40013.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 183

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               N + +RK    +  ++ + TG ++  ++++E G S+  I  +  +A+ L      
Sbjct: 6  KQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQVSFTS 65

Query: 80 L 80
          L
Sbjct: 66 L 66


>gi|89896705|ref|YP_520192.1| hypothetical protein DSY3959 [Desulfitobacterium hafniense Y51]
 gi|89336153|dbj|BAE85748.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 106

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N R  R+   +TQK++ +  G   + IS  E G ++I+I  ++ + + L+  L  +
Sbjct: 2  AENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDI 59


>gi|118581525|ref|YP_902775.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
          2379]
 gi|118504235|gb|ABL00718.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM
          2379]
          Length = 76

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R    LTQ ++   TG  Q  ISE+E GK  I + +   LA  L +    LL
Sbjct: 25 RHREGLTQVQLAEATGIPQRHISEMENGKRVIGVTSAKKLAEALHSDHRGLL 76


>gi|321272295|gb|ADW80180.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of
           Nasonia vitripennis phage WOVitA1]
          Length = 306

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQK++ N+ G     I E E G+S ++++ +  +A  L   +  LL
Sbjct: 163 VGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEIAKVLSISIIDLL 222



 Score = 42.7 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R E   TQK++  + G     I + E G   I I  +  +A  L   +  L+
Sbjct: 13 VGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEALSVNVKGLV 72


>gi|320539393|ref|ZP_08039062.1| putative transcriptional regulator [Serratia symbiotica str.
          Tucson]
 gi|320030518|gb|EFW12528.1| putative transcriptional regulator [Serratia symbiotica str.
          Tucson]
          Length = 125

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        IRK   LTQ+ + +  G   + I   E G S  +++ +  +A TL      
Sbjct: 12 MSVSTRLAYIRKSKGLTQQALADAIGLHVTQIKRYEAGTSQPSLEAIKKIAQTLRVTTDS 71

Query: 80 LL 81
          L+
Sbjct: 72 LI 73


>gi|332653120|ref|ZP_08418865.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
 gi|332518266|gb|EGJ47869.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  + +R    L Q+ + +  G ++  IS +E G    +I   + +A    T + ++ 
Sbjct: 3  LGNRLKELRAAKGLNQQGLGSLVGASRQTISLIERGDYNPSITLALRIAKVFGTTVDEVF 62


>gi|302876490|ref|YP_003845123.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
 gi|307687161|ref|ZP_07629607.1| transcriptional regulator, XRE family protein [Clostridium
          cellulovorans 743B]
 gi|302579347|gb|ADL53359.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E +I  N  +  R E  ++Q E+    G ++  IS +ETG         +I    LD 
Sbjct: 1  MSEELILKNRLKVARAEKNISQGELARMVGVSRQTISSIETGHFNPTAKLALIFCIALDK 60

Query: 76 PLWKLL 81
              L 
Sbjct: 61 KFEDLF 66


>gi|289168804|ref|YP_003447073.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288908371|emb|CBJ23213.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 287

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGEV-LSRTSLSKIESGKATPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|229194032|ref|ZP_04320926.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|228589432|gb|EEK47357.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
          Length = 184

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +     RK A LT K +        S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 6  VGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLFNFF 65


>gi|255092294|ref|ZP_05321772.1| putative phage repressor [Clostridium difficile CIP 107932]
 gi|255100378|ref|ZP_05329355.1| putative phage repressor [Clostridium difficile QCD-63q42]
 gi|255306320|ref|ZP_05350491.1| putative phage repressor [Clostridium difficile ATCC 43255]
 gi|255649811|ref|ZP_05396713.1| putative phage repressor [Clostridium difficile QCD-37x79]
          Length = 118

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +RKE  LTQ+E+  + G +Q  +   ET     +   +  LA   +  +  L
Sbjct: 1  MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|148998894|ref|ZP_01826330.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae
          SP11-BS70]
 gi|168576210|ref|ZP_02722104.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194397548|ref|YP_002037696.1| hypothetical protein SPG_0986 [Streptococcus pneumoniae G54]
 gi|225856709|ref|YP_002738220.1| hypothetical protein SPP_1071 [Streptococcus pneumoniae P1031]
 gi|307067756|ref|YP_003876722.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|147755321|gb|EDK62372.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae
          SP11-BS70]
 gi|183577909|gb|EDT98437.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194357215|gb|ACF55663.1| conserved domain protein [Streptococcus pneumoniae G54]
 gi|225725852|gb|ACO21704.1| conserved domain protein [Streptococcus pneumoniae P1031]
 gi|306409293|gb|ADM84720.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|332200556|gb|EGJ14628.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQK+I     F  S  +++E G+ T+  D ++ L++  D     LL
Sbjct: 3  RRLRDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLL 60


>gi|21242245|ref|NP_641827.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21107669|gb|AAM36363.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 109

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R  R    LTQ E+        + IS  E+G    + DN+  L   L      L
Sbjct: 4  LFPARLREARDRRGLTQAELGKEASLPSTTISHFESGSRKPSFDNLRRLTKVLGVSTDYL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|314922041|gb|EFS85872.1| cupin domain protein [Propionibacterium acnes HL001PA1]
 gi|314965926|gb|EFT10025.1| cupin domain protein [Propionibacterium acnes HL082PA2]
 gi|314980669|gb|EFT24763.1| cupin domain protein [Propionibacterium acnes HL110PA3]
 gi|315091025|gb|EFT63001.1| cupin domain protein [Propionibacterium acnes HL110PA4]
 gi|315095153|gb|EFT67129.1| cupin domain protein [Propionibacterium acnes HL060PA1]
 gi|315105385|gb|EFT77361.1| cupin domain protein [Propionibacterium acnes HL050PA2]
 gi|327328782|gb|EGE70542.1| putative Helix-turn-helix domain protein [Propionibacterium acnes
          HL103PA1]
          Length = 197

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 26/75 (34%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
           ++               +  R   + T  ++    G ++  +  +E G     +  ++ 
Sbjct: 2  HYMDTGAEPLAHAIGARVKQQRMARRWTLDQLARYAGVSRRVLVNVEQGAVNPRVGTLLR 61

Query: 69 LAHTLDTPLWKLLKP 83
          L+  L   L  L++P
Sbjct: 62 LSDALGVGLPALVEP 76


>gi|313898555|ref|ZP_07832092.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956937|gb|EFR38568.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 72

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L+E +I  N  +  R    L+Q ++    G +++ IS +ETG+        +IL   L+ 
Sbjct: 2  LKEELILRNRLKQARTAMHLSQTQLAELVGVSRNTISSIETGQFNPTAKLALILCIALEQ 61

Query: 76 PLWKLL 81
              L 
Sbjct: 62 KFEDLF 67


>gi|307332017|ref|ZP_07611109.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306882357|gb|EFN13451.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 825

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDT 75
           R +R  A LTQ+E+  R+G + S I  LETGK     +  + +LA  LD 
Sbjct: 8  LRPLRVRAGLTQEELSARSGVSVSTIRRLETGKSRDHRLSTLNLLADALDV 58


>gi|303245781|ref|ZP_07332064.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans
           JJ]
 gi|302493044|gb|EFL52909.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans
           JJ]
          Length = 124

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 18  ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +R++   +  R +R    +T +++ +  G   + IS++E GK  ++ + +  +A  L   
Sbjct: 59  DRLLAGEHPVRVLRSHRGMTLQQVADICGVTNAHISQIERGKRCMSTELLQKMAEALRVD 118

Query: 77  LWKLLKP 83
           + +LL P
Sbjct: 119 I-ELLLP 124


>gi|300858677|ref|YP_003783660.1| HTH_3 family transcriptional regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686131|gb|ADK29053.1| HTH_3-family transcription regulator [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206384|gb|ADL10726.1| Helix-turn-helix XRE-family like protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302330940|gb|ADL21134.1| Helix-turn-helix XRE-family like protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276627|gb|ADO26526.1| Helix-turn-helix XRE-family like protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 129

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%)

Query: 14  AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
                R       R  R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 43  PEPLLRQALGAALRAFRADKGITLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 102

Query: 74  DTPLWKLL 81
              +  +L
Sbjct: 103 GATVADVL 110


>gi|282900395|ref|ZP_06308345.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194708|gb|EFA69655.1| PatB (Transcriptional regulator) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 528

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 2   PRRKRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           P RK+         +     +        RK   ++Q+E+    G +QSWI ++E G+  
Sbjct: 453 PHRKQHRSVKGKRSVKPHDDLLGEQVLQARKAISISQRELAKLAGKSQSWIRDVENGRLK 512

Query: 61  I 61
            
Sbjct: 513 P 513


>gi|262195991|ref|YP_003267200.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262079338|gb|ACY15307.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 152

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 12 SDAILRERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           D   R R +F+          R E   TQ ++  + G + ++   +E G    +    +
Sbjct: 5  PDENERLRALFLQRLPPVLTEARMERGWTQADVAEQLGVSLAYYGRIERGDHVPSFLMTV 64

Query: 68 ILAHTLDTPLWKLLKP 83
           LA      L  LL P
Sbjct: 65 KLARLFALSLDGLLDP 80


>gi|227509901|ref|ZP_03939950.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227512835|ref|ZP_03942884.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083835|gb|EEI19147.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190621|gb|EEI70688.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 78

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK+ KL+Q  +  + G A+  I+ +E  K   +++  I +A  L T L  L 
Sbjct: 13 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 70


>gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM
          13280]
 gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM
          13280]
          Length = 155

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 28/55 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +   ++R++A  +Q+++ +  G ++  IS+ E  +    +DN++ LA      
Sbjct: 30 LADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLAQIYRVS 84


>gi|254388827|ref|ZP_05004059.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294813122|ref|ZP_06771765.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|326441579|ref|ZP_08216313.1| hypothetical protein SclaA2_10964 [Streptomyces clavuligerus ATCC
          27064]
 gi|197702546|gb|EDY48358.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294325721|gb|EFG07364.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 280

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R       R  RK   L+Q+E+ +R   +  ++ ++E GK  +  D    +A  LD  L
Sbjct: 13 RDFMGEELRRRRKAHGLSQRELGDRMFLSGGYVGQIEVGKRRMTED----IAGRLDVEL 67


>gi|115351079|ref|YP_772918.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115281067|gb|ABI86584.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
          Length = 219

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P + D  + ER+      R++R     T   +  R+G ++S IS +E   ++     +  
Sbjct: 7  PPVDDTGINERI--ARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAVVLDK 64

Query: 69 LAHTLDTPLWKLL 81
          LA  L   L  L 
Sbjct: 65 LAAGLGVSLAGLF 77


>gi|332702859|ref|ZP_08422947.1| helix-turn-helix domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553008|gb|EGJ50052.1| helix-turn-helix domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 123

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R++   N  R +R    +T +++ +  G   + IS++E GK +++ D +  +A  L T
Sbjct: 58  VDRLLAGENPVRVLRSYRGMTLQQVADACGVTNAHISQIEMGKRSMSTDLLKKMATALRT 117

Query: 76  PLWKLL 81
               LL
Sbjct: 118 DAELLL 123


>gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein
          [Ruminococcaceae bacterium D16]
 gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein
          [Ruminococcaceae bacterium D16]
          Length = 194

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++R +  LTQ+E+  R   +   +S+ E G+   ++  +  LA TL   +  LL
Sbjct: 10 IRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQGCPDVSLLPSLAQTLGVEVEGLL 65


>gi|319784815|ref|YP_004144291.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170703|gb|ADV14241.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 238

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               R  RK+  +T  ++   T  +   +S++E G ++ ++  +  L+  L  P+    +
Sbjct: 54  GREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPVTAFFR 113


>gi|291544366|emb|CBL17475.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13]
          Length = 322

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF +    +RK++  +Q+E+  +   ++  +S+ E  +S  +++ M+ L+         
Sbjct: 1  MIFADKLIQLRKKSGWSQEELAQQMHVSRQSVSKWEGAQSVPDLEKMVQLSRLFHVTTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|253681078|ref|ZP_04861881.1| DNA-binding protein [Clostridium botulinum D str. 1873]
 gi|253562927|gb|EES92373.1| DNA-binding protein [Clostridium botulinum D str. 1873]
          Length = 221

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  R  R ++ +T+K++  + G ++ +I E+E+GK  IN   M  ++  L   L
Sbjct: 5  GSKIREARLKSNITEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDL 59


>gi|209809204|ref|YP_002264742.1| putative HTH-type transcriptional regulator [Aliivibrio
          salmonicida LFI1238]
 gi|208010766|emb|CAQ81159.1| putative HTH-type transcriptional regulator [Aliivibrio
          salmonicida LFI1238]
          Length = 504

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S +++R+        RN+RK   LT +++  R          + S++S +E GK   + D
Sbjct: 4  SKSLIRQSHFLGTKIRNLRKRNHLTMEDLSTRCVRVDPENSPSVSYLSMIERGKRVPSAD 63

Query: 65 NMIILAHTLDTP 76
           + ++A      
Sbjct: 64 MLEVIATVFQKE 75


>gi|167567621|ref|ZP_02360537.1| DNA-binding regulatory protein [Burkholderia oklahomensis EO147]
 gi|167569134|ref|ZP_02362008.1| DNA-binding regulatory protein [Burkholderia oklahomensis C6786]
          Length = 81

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RKE  ++Q+ + +     +S + ++E G+  + + N++ +A  +     +LL
Sbjct: 17 LGAAIRARRKELAISQEALADFAEIDRSHMGKIERGERNVTVMNIVRIARAMQLLPSELL 76

Query: 82 K 82
          +
Sbjct: 77 R 77


>gi|153870922|ref|ZP_02000218.1| transcriptional regulator, XRE family protein [Beggiatoa sp. PS]
 gi|152072613|gb|EDN69783.1| transcriptional regulator, XRE family protein [Beggiatoa sp. PS]
          Length = 114

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M +  ++   LS              +  R E  ++Q ++  R G ++  I  LE G   
Sbjct: 1  MKKPLKNTRLLSRHTTIVLETLGAMLKAARIECHISQADLAERVGVSRYTIGLLEKGNPN 60

Query: 61 INIDNMIILAHTLDTPL 77
          + I  +   A  +  PL
Sbjct: 61 VAIGTVFEAATIVGIPL 77


>gi|153853942|ref|ZP_01995275.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814]
 gi|149753324|gb|EDM63255.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814]
          Length = 147

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 17 RER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           ER    M      ++ R ++  TQ+ +  R   ++  IS  E  KS  +I ++I L+  
Sbjct: 6  PERRNTDMEIGKKLKDARMKSGFTQETVAERINVSRQTISNWENEKSYPDIISVIELSSL 65

Query: 73 LDTPLWKLLK 82
              L  LLK
Sbjct: 66 YSISLDDLLK 75


>gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes
          MGAS10394]
 gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes
          MGAS10394]
          Length = 281

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  RK+ KLTQKE+  +   A + IS  E G++   +DN+  +      P  KLL
Sbjct: 41 NIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIEQMTSIFGIPKSKLL 97


>gi|21227029|ref|NP_632951.1| PbsX family transcriptional regulator [Methanosarcina mazei Go1]
 gi|20905349|gb|AAM30623.1| transcriptional regulator, PBSX family [Methanosarcina mazei Go1]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+ + +R G  +  I  +E GK   ++D    LA   +  +  + 
Sbjct: 3  NKIKVYRAMHDLTQENLADRVGVTRQTIHAIEKGKYDPSLDLAFKLARLFNANIEDIF 60


>gi|300814289|ref|ZP_07094561.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300511556|gb|EFK38784.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  NN   IRK+  +TQK+I N  G    +IS+LE G S  ++     +A  L+  + +L
Sbjct: 1  MLKNNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEIARFLECGVEEL 60


>gi|300782967|ref|YP_003763258.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299792481|gb|ADJ42856.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 421

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +R E  LTQ+E+     ++ +++S +ETG  T + D +   A  L     +
Sbjct: 3  ESVGERLRELRTERGLTQRELAGPQ-YSAAYVSSVETGARTPSGDALRFFARQLGIDPDE 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|292491277|ref|YP_003526716.1| hypothetical protein Nhal_1163 [Nitrosococcus halophilus Nc4]
 gi|291579872|gb|ADE14329.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 101

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +R    + QKE+  + G ++S +SE+E+GK    +  +   +     P
Sbjct: 6  LRLMRVFHDMKQKELAEKLGISKSHLSEIESGKKVPTLALLNRYSEVFGIP 56


>gi|239994900|ref|ZP_04715424.1| transcriptional regulator [Alteromonas macleodii ATCC 27126]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+   +R + K++Q+E+ +  G ++  IS +ETG+ T ++   + +A     P+ ++ 
Sbjct: 7  NHIHKLRLQHKISQQELADAIGVSRKTISTVETGRFTPSVVIALKIAEYFAIPVEQVF 64


>gi|228986840|ref|ZP_04146968.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228772922|gb|EEM21360.1| Transcriptional regulator, pbsX [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 59

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RKE  ++Q+ +    G ++++ISE+E  K   N+   I +A TL T +  + 
Sbjct: 2  NKLAKFRKEKSISQEILAICVGSSRTYISEIENNKKQPNVKLAIRIAKTLGTNVESIF 59


>gi|222152359|ref|YP_002561534.1| DNA-binding protein [Streptococcus uberis 0140J]
 gi|222113170|emb|CAR40616.1| DNA-binding protein [Streptococcus uberis 0140J]
          Length = 112

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R E  LTQ+++  +     +++ +LE   + I ++ +  +   LD    +  
Sbjct: 12 KRIRLLRLEKGLTQEQLEEKADLGTNYVYKLENQSTNIKVNTLEKVMTALDVDFEEFF 69


>gi|220913926|ref|YP_002489235.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|219860804|gb|ACL41146.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
          Length = 421

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    R  R E  LTQ E+     ++ S+IS LETG+     + +  LA  L+     L
Sbjct: 5  FGEKLRAERLERGLTQAELGKDL-YSPSYISLLETGRREPTAEVIEELARRLELAPKAL 62


>gi|241664279|ref|YP_002982639.1| XRE family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240866306|gb|ACS63967.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D]
          Length = 117

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  R   +LTQ+++    G  Q  IS  E G +   +  +I LA   + PL  LL
Sbjct: 14 LGKAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQLADVFNVPLESLL 73

Query: 82 K 82
          +
Sbjct: 74 R 74


>gi|281355570|ref|ZP_06242064.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
 gi|281318450|gb|EFB02470.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
          Length = 185

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+  LT KE  + +G + + +S+LE G    ++  + ++  TLD  L  L 
Sbjct: 7  GRKIHQYRKDKNLTIKEFSDISGISTALVSQLERGIGNPSLSVLRLICRTLDISLSSLF 65


>gi|150398683|ref|YP_001329150.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150030198|gb|ABR62315.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 263

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F +  +  R   +++Q ++ N  G +   +S LETG+S      ++ LA  LD P  +
Sbjct: 3  FGSRLKEWRGHRRMSQLDLANAAGISARHLSFLETGRSKPTEGMILRLASVLDVPARE 60


>gi|94990047|ref|YP_598147.1| phage transcriptional repressor [Streptococcus pyogenes
          MGAS10270]
 gi|94543555|gb|ABF33603.1| phage transcriptional repressor [Streptococcus pyogenes
          MGAS10270]
          Length = 249

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LT +++    G  +S IS+ E G  +  I  +  +A        K++
Sbjct: 7  FPAMVKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMM 66


>gi|94988166|ref|YP_596267.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94993958|ref|YP_602056.1| phage transcriptional repressor [Streptococcus pyogenes
          MGAS10750]
 gi|94541674|gb|ABF31723.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429]
 gi|94547466|gb|ABF37512.1| phage transcriptional repressor [Streptococcus pyogenes
          MGAS10750]
          Length = 249

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    LT +++    G  +S IS+ E G  +  I  +  +A        K++
Sbjct: 7  FPAMVKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMM 66


>gi|310767097|gb|ADP12047.1| Predicted transcriptional regulator [Erwinia sp. Ejp617]
          Length = 187

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R E   + + +   TG +++ +S +E  +++     +  L +     + +LL
Sbjct: 10 LARRLAELRLEKSWSLETLAELTGISRASLSRIERAETSPTATLLNRLCNAYGLTMSRLL 69


>gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 3_1_53]
          Length = 190

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +R E +L+Q+ +      ++  +S+ E G S  + +N+  LA      +  L+
Sbjct: 3  KIKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSKPSSENLARLAEIFSVHIQDLM 59


>gi|262283189|ref|ZP_06060956.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262261441|gb|EEY80140.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 135

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R+ + +TQ+ +      ++  IS  ET K   +I  ++ L+   +  L +LLK
Sbjct: 4  GKKLKEARQLSGMTQESVAEELNVSRQTISNWETEKFYPDILYVLQLSDLYEVSLDELLK 63


>gi|227513208|ref|ZP_03943257.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC
          11577]
 gi|227083589|gb|EEI18901.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC
          11577]
          Length = 104

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +RK   LT  E+ ++ G++QS+IS  ET ++T +I+ +  +   L T
Sbjct: 7  GKKLKELRKAKGLTASELGSKMGYSQSYISRFETDRATPDINALGDMLKYLGT 59


>gi|283795783|ref|ZP_06344936.1| conserved domain protein [Clostridium sp. M62/1]
 gi|291076414|gb|EFE13778.1| conserved domain protein [Clostridium sp. M62/1]
          Length = 106

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+IRK+  L  +E+  +TG + S + ++E G   +++ N+ +L    +T    LL
Sbjct: 12 IRDIRKDKGLLIEEVAAKTGISVSTLGQVEQGGRNLSMKNLYMLMEVYETDANTLL 67


>gi|114327151|ref|YP_744308.1| MerR family transcriptional regulator [Granulibacter bethesdensis
          CGDNIH1]
 gi|114315325|gb|ABI61385.1| transcriptional regulator, MerR family [Granulibacter
          bethesdensis CGDNIH1]
          Length = 464

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R +R+E   +Q+ +  R G + S+++ +E  +  +    +I LA TL   L 
Sbjct: 3  RPLIGRTVRRLRQERGESQQSLAVRLGISASYLNLIEHDQRGVTASLLIKLAETLRVDLR 62

Query: 79 KL 80
           L
Sbjct: 63 AL 64


>gi|113867425|ref|YP_725914.1| anaerobic benzoate catabolism transcriptional regulator
          [Ralstonia eutropha H16]
 gi|113526201|emb|CAJ92546.1| shikimate kinase containing a XRE-type HTH DNA-binding domain
          [Ralstonia eutropha H16]
          Length = 313

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R++R    +++K++    G ++ +++ LETG    ++  +  +A  LD PL  +
Sbjct: 37 LLGERIRSLRASRGMSRKDLARGAGVSERYLANLETGTGNASVLLLRQVARALDVPLPVV 96

Query: 81 L 81
          L
Sbjct: 97 L 97


>gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
 gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7]
          Length = 205

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 35/67 (52%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R       R IRK  +LT K++  R+G A S +S++E  + +++ + +   A  L+ 
Sbjct: 15 QLQRKEIGARLRAIRKRHELTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALEV 74

Query: 76 PLWKLLK 82
           + ++ +
Sbjct: 75 DIAQIFR 81


>gi|15901276|ref|NP_345880.1| transcriptional repressor, putative [Streptococcus pneumoniae
          TIGR4]
 gi|15903322|ref|NP_358872.1| transcriptional repressor, putative [Streptococcus pneumoniae R6]
 gi|298502624|ref|YP_003724564.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|14972912|gb|AAK75520.1| putative transcriptional repressor [Streptococcus pneumoniae
          TIGR4]
 gi|15458920|gb|AAL00083.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|298238219|gb|ADI69350.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A]
          Length = 79

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 19 RMIFVNNFRN--IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R     N +    R E  LTQ ++    G  +  I  +E GK   ++     +   L   
Sbjct: 8  RTKVAKNLKLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKT 67

Query: 77 LWKLL 81
          L +L 
Sbjct: 68 LDQLF 72


>gi|148260500|ref|YP_001234627.1| hypothetical protein Acry_1500 [Acidiphilium cryptum JF-5]
 gi|146402181|gb|ABQ30708.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5]
          Length = 469

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R +R+E  LTQ+++ +R G + S+++ +E  +  +    +I L  TL   L 
Sbjct: 3  KPLIGRIVRRLRQEQGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKVDLA 62

Query: 79 KL 80
           L
Sbjct: 63 AL 64


>gi|297565618|ref|YP_003684590.1| XRE family transcriptional regulator [Meiothermus silvanus DSM
          9946]
 gi|296850067|gb|ADH63082.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM
          9946]
          Length = 73

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R+  +++Q ++      +Q  I ++E  +    +  ++ LA+ L     +L
Sbjct: 1  MIGERLKALREARQMSQYDLARAAHVSQGLIWQIEANRKNPGLKTLLRLANALSVSPDQL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
 gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp.
          spizizenii str. W23]
          Length = 132

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R IRKE K T  E+    G   S++S +E      +I  +  +A  L  
Sbjct: 7  GEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERNLQQPSIQVIEKIADYLGV 59


>gi|225868447|ref|YP_002744395.1| transcriptional regulator [Streptococcus equi subsp.
          zooepidemicus]
 gi|225870630|ref|YP_002746577.1| transcriptional regulator [Streptococcus equi subsp. equi 4047]
 gi|225700034|emb|CAW94064.1| putative transcriptional regulator [Streptococcus equi subsp.
          equi 4047]
 gi|225701723|emb|CAW99080.1| putative transcriptional regulator [Streptococcus equi subsp.
          zooepidemicus]
          Length = 65

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE  +TQ+E+ +    ++  I  LE G+   +I     +A      +  + 
Sbjct: 3  NRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIF 60


>gi|160939527|ref|ZP_02086877.1| hypothetical protein CLOBOL_04421 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437737|gb|EDP15499.1| hypothetical protein CLOBOL_04421 [Clostridium bolteae ATCC
           BAA-613]
          Length = 468

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----D 74
             +V + R  R    ++Q+++    G  + ++S++ETGK+  +      +   L     D
Sbjct: 79  ETWVRDIREKRAAYGISQQKLALAAGITRPYLSDIETGKAHPSKALQEAITEALERFNPD 138

Query: 75  TPLWKLL 81
            PL  L 
Sbjct: 139 APLEMLF 145


>gi|126740981|ref|ZP_01756664.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126717907|gb|EBA14626.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 204

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  I     R+ RKE  LT +E        +S +S++E  ++  + + +  L  TL+  
Sbjct: 19 PDGEILGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELE 78

Query: 77 LWKLL 81
            +L 
Sbjct: 79 TPQLF 83


>gi|119472046|ref|ZP_01614304.1| Predicted transcriptional regulator [Alteromonadales bacterium
          TW-7]
 gi|119445181|gb|EAW26473.1| Predicted transcriptional regulator [Alteromonadales bacterium
          TW-7]
          Length = 66

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN    RKEA L+Q+E+ +    ++  IS +ET + T ++   + +A   + P+  L 
Sbjct: 3  NNIAKFRKEAGLSQQELADAISVSRKTISTVETNRFTPSVIIALKIAANFNMPVESLF 60


>gi|317496310|ref|ZP_07954668.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424]
 gi|316913568|gb|EFV35056.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424]
          Length = 64

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK+  +TQ E+ +  G ++ ++S +E  K   +I     L+     P+  L 
Sbjct: 5  NKISFYRKKNGMTQDELASMLGVSRQFVSSIEGAKKIPSIKLAFQLSDIFGVPVDNLF 62


>gi|309812095|ref|ZP_07705855.1| toxin-antitoxin system, antitoxin component, Xre family
          [Dermacoccus sp. Ellin185]
 gi|308433974|gb|EFP57846.1| toxin-antitoxin system, antitoxin component, Xre family
          [Dermacoccus sp. Ellin185]
          Length = 60

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+ + +      S +  +E G+   ++D M+ L+  L   L +L 
Sbjct: 1  MSQEALAHAVDLHLSMVGRVERGEVAPSLDTMMKLSCGLGVELAELF 47


>gi|315501700|ref|YP_004080587.1| helix-turn-helix domain protein [Micromonospora sp. L5]
 gi|315408319|gb|ADU06436.1| helix-turn-helix domain protein [Micromonospora sp. L5]
          Length = 213

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R IR     T +E+    G +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRVIGGVLRRIRLRQGRTLREVALAAGVSLPYLSEVERGRKEASSEVLAAICRALGIHLA 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 DLLE 68


>gi|269968531|ref|ZP_06182537.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B]
 gi|269826866|gb|EEZ81194.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B]
          Length = 210

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK  KL+   +  R G ++  + E+E G +  +I  +  L+  L   +  ++
Sbjct: 32 VAARIKEHRKRLKLSLDALSKRAGISKGMLVEVEKGAANPSISTLCKLSAALGISVADIV 91


>gi|227549722|ref|ZP_03979771.1| MerR family transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227078218|gb|EEI16181.1| MerR family transcriptional regulator [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 467

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 23/57 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +      + S+++++E     + +  +  +      
Sbjct: 3  KTYVGSRLRQLRRERNLSQASLAATLELSASYVNQIEHDVRPLTVPVLKRITEAFGV 59


>gi|169630151|ref|YP_001703800.1| transcriptional regulator [Mycobacterium abscessus ATCC 19977]
 gi|169242118|emb|CAM63146.1| Possible transcriptional regulatory protein [Mycobacterium
          abscessus]
          Length = 116

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R     T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 6  REAIGDTLRSARSGQGKTLREVSDSARVSLGYLSEVERGRKEASSELLAAICGALDVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 QVL 68


>gi|330837028|ref|YP_004411669.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides
          DSM 17374]
 gi|329748931|gb|AEC02287.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374]
          Length = 191

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +R    LT   +  R+G +++ +S++E+ K    +  +  ++  L   L  +L
Sbjct: 9  GKNIQKLRMSRNLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKISKGLGVELQDVL 67


>gi|307320352|ref|ZP_07599770.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306894074|gb|EFN24842.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
          Length = 472

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      R++R   +LTQ +   R G + S+++++E  +  ++   ++ LA      + 
Sbjct: 5  KLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64

Query: 79 KL 80
          +L
Sbjct: 65 EL 66


>gi|297616433|ref|YP_003701592.1| XRE family transcriptional regulator [Syntrophothermus
          lipocalidus DSM 12680]
 gi|297144270|gb|ADI01027.1| transcriptional regulator, XRE family [Syntrophothermus
          lipocalidus DSM 12680]
          Length = 128

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R++  L++ ++    G +  ++ +LE G+  +++   +     L      
Sbjct: 6  KALGRRIREQRQKLGLSRSQLAEIIGVSDYYVGQLERGERVMSLAVFMRFVFCLRVSPDY 65

Query: 80 LLK 82
          LL 
Sbjct: 66 LLT 68


>gi|311742480|ref|ZP_07716289.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium
          marinum DSM 15272]
 gi|311314108|gb|EFQ84016.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Aeromicrobium
          marinum DSM 15272]
          Length = 511

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R+ R+ + LTQ ++      +QS ++ +E G+  + +D +  +   LD+ L 
Sbjct: 15 IRDARQHSGLTQAQLATELSTSQSAVNRIEKGQQNLTLDMLARIGKALDSELV 67


>gi|228926909|ref|ZP_04089975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228832644|gb|EEM78215.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 114

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E  ++   ++S IS LET  +  ++D++  +A   D  +  L+
Sbjct: 4  FGENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLM 63


>gi|226305801|ref|YP_002765761.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226184918|dbj|BAH33022.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 194

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+++ +T  ++   T  + S +S LE+G    N++ ++ +A     PL  L+
Sbjct: 14 GPRLRALRQQSDMTLADLSETTDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72


>gi|225376643|ref|ZP_03753864.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans
          DSM 16841]
 gi|225211526|gb|EEG93880.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans
          DSM 16841]
          Length = 101

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+   +  ++ N  G +QS++ ++E G     I+ +  +   L+  L    
Sbjct: 4  GEKITYYRKKKNYSVNKLANLAGISQSYLRDIELGNKNPTIEFLSYICEALNISLKDFF 62


>gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 189

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    +T  E+ N +  +++ IS +E  +++     +  L   L   L    
Sbjct: 10 GARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAALGLSLSSFF 68


>gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108]
 gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108]
          Length = 116

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK +K+TQ+++ +  G ++  IS  E GK +   +++  +A         L
Sbjct: 1  MIGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|17975230|ref|NP_536425.1| putative helix-turn-helix transcriptional regulator [Burkholderia
           phage phiE125]
 gi|134288626|ref|YP_001111148.1| gp69 [Burkholderia phage phi644-2]
 gi|17484091|gb|AAL40342.1|AF447491_70 gp68 [Burkholderia phage phiE125]
 gi|134132011|gb|ABO60808.1| gp69 [Burkholderia phage phi644-2]
          Length = 128

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++
Sbjct: 66  VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 122


>gi|83719318|ref|YP_441974.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|257138149|ref|ZP_05586411.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83653143|gb|ABC37206.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 192

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R +R     +   +  R+  ++S IS +E  +S+     +  LA  L   +  
Sbjct: 5  QLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVSIAS 64

Query: 80 LLK 82
          L +
Sbjct: 65 LFE 67


>gi|29374946|ref|NP_814099.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29342404|gb|AAO80170.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 70

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R +  LTQK +   TG  ++ I  +E G+S  +    I+LA  L+     L
Sbjct: 8  LRAARIKKSLTQKRLAELTGVTETTIRNIENGRSCPSFKLSIMLAKLLNVDFETL 62


>gi|333025906|ref|ZP_08453970.1| putative regulatory protein [Streptomyces sp. Tu6071]
 gi|332745758|gb|EGJ76199.1| putative regulatory protein [Streptomyces sp. Tu6071]
          Length = 284

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R+   N  R +R++  +T + +    G+ +S IS +E GK+  ++ ++           
Sbjct: 10 ARIALGNRLRALRRQRGITARALAADCGWHESKISRVENGKALPSVQDLTKWTEACGAAP 69


>gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 236

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK  KLT +E+  +   ++S +S+ E G+  I+IDN+ ++A  LD  + KLL
Sbjct: 9  VGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68


>gi|302521517|ref|ZP_07273859.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302430412|gb|EFL02228.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 276

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R       R +RK    TQ+++ +R+ ++ + IS +ETG+    +
Sbjct: 13 REALGVKLRQLRKARGWTQEDLADRSAYSPTHISAIETGRKPPTL 57


>gi|291528651|emb|CBK94237.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 213

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RN R  + +TQKE+ ++ G  +S I   E G    +   ++ +A+ L    + L  P
Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70


>gi|237803325|ref|ZP_04590910.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331025306|gb|EGI05362.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 105

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F   F+ +R    +TQ++  +    ++ +I  LE G+ + ++  ++ LA  L      L+
Sbjct: 15 FGIAFKRLRHLKGMTQEDFSSV--VSERYIRMLEKGQYSPSLSTIVELAKVLGIGAVSLV 72


>gi|237738629|ref|ZP_04569110.1| predicted protein [Fusobacterium sp. 2_1_31]
 gi|229424112|gb|EEO39159.1| predicted protein [Fusobacterium sp. 2_1_31]
          Length = 213

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST---INIDNMIILA 70
              +  R E  L+QKE   + G  Q ++S +E G+      +++  I++A
Sbjct: 5  GRKIKKFRIENNLSQKEFAEKIGVTQGFLSYVENGRLNIESPSLEKKILIA 55


>gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 236

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK  KLT +E+  +   ++S +S+ E G+  I+IDN+ ++A  LD  + KLL
Sbjct: 9  VGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVDKLL 68


>gi|167002988|ref|ZP_02268778.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|238561193|ref|ZP_04609475.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|238525188|gb|EEP88617.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243061409|gb|EES43595.1| DNA-binding protein [Burkholderia mallei PRL-20]
          Length = 69

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R +R+ A LTQ ++  R    QS++S++E G+  ++I
Sbjct: 6  LRALRRAAGLTQTQLAERLSIDQSYLSKIERGERYVDI 43


>gi|254260977|ref|ZP_04952031.1| gp68 [Burkholderia pseudomallei 1710a]
 gi|254219666|gb|EET09050.1| gp68 [Burkholderia pseudomallei 1710a]
          Length = 128

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++
Sbjct: 66  VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 122


>gi|167647481|ref|YP_001685144.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167349911|gb|ABZ72646.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 71

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ R +R E   +TQ ++  R G  +  ++ +E GK + +++    +A      L  + +
Sbjct: 9  NDIRRLRFEHGEMTQADLAQRIGMTRQTVAAIEQGKYSPSLEAAFRIAQVFGVGLDAVFR 68


>gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 81

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R +A LTQ E+    G  ++  + +E G    ++   + +A  L+ P+ +L 
Sbjct: 5  LRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKNPSVGTALRIARALNRPVEELF 60


>gi|33152220|ref|NP_873573.1| hypothetical protein HD1096 [Haemophilus ducreyi 35000HP]
 gi|33148442|gb|AAP95962.1| hypothetical protein HD_1096 [Haemophilus ducreyi 35000HP]
          Length = 129

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++RK   L+Q+EI ++   + S   ++E GKS IN   +  +A  L+     L+
Sbjct: 4  FEKIRSLRKNHNLSQEEIADKINLSVSGYRKIENGKSRINHKRLEQIAEALEVSPLDLI 62


>gi|158317088|ref|YP_001509596.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112493|gb|ABW14690.1| putative transcriptional regulator, XRE family [Frankia sp.
           EAN1pec]
          Length = 392

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDN 65
           D P ++DA+   R      F+  R+    TQ +I    G  QS +SE+ TG+  + +++ 
Sbjct: 127 DRPEMADAL--ARRDIGTVFKIYRQWTGATQTQIAAVCGLPQSHVSEISTGRRQVTSLEI 184

Query: 66  MIILAHTLDTP 76
              +A  +D P
Sbjct: 185 FERIADGIDIP 195


>gi|332668582|ref|YP_004451589.1| helix-turn-helix domain-containing protein [Cellulomonas fimi
          ATCC 484]
 gi|332337619|gb|AEE44202.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
          Length = 176

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R++   T +++      + +++SE+E G+   + + ++ +   L   L 
Sbjct: 24 RRLVGAVLRERREDQGRTLRDVALDARVSVAYLSEIERGRKEASSEVLVAVCRALGMRLV 83

Query: 79 KLL 81
           L+
Sbjct: 84 DLV 86


>gi|328478348|gb|EGF48126.1| XRE family transcriptional regulator [Lactobacillus rhamnosus
          MTCC 5462]
          Length = 112

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  +  R++  LTQ ++  +   +   IS  E G+S  +I  ++ ++      L +
Sbjct: 1  MQFSDKLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQ 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|259507468|ref|ZP_05750368.1| transcriptional regulator ClgR [Corynebacterium efficiens YS-314]
 gi|259164956|gb|EEW49510.1| transcriptional regulator ClgR [Corynebacterium efficiens YS-314]
          Length = 107

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R+ R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 21 PEPLLREALGAALRSFRADKGITLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80

Query: 74 DTPLWKLL 81
             +  +L
Sbjct: 81 GASVADVL 88


>gi|225025876|ref|ZP_03715068.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353]
 gi|224956798|gb|EEG38007.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353]
          Length = 64

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    ++Q E+  R   ++  I  +E G     I   I + H L   L +L 
Sbjct: 5  RLKAARAALDMSQAELAKRVNVSRQTIVAIEKGDYNPTIKLCIAICHELGKTLDELF 61


>gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43]
 gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43]
          Length = 478

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ IF     R IR    LTQ  +    G + S+++ +E  +  + +  ++ L+      
Sbjct: 3  DQKIFAGPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQRPLTVQLILKLSSVYKVD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VEEL 66


>gi|16265194|ref|NP_437986.1| hypothetical protein SM_b20754 [Sinorhizobium meliloti 1021]
 gi|15141334|emb|CAC49846.1| probable transcriptional regulator [Sinorhizobium meliloti 1021]
          Length = 491

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      R++R   +LTQ +   R G + S+++++E  +  ++   ++ LA      + 
Sbjct: 24 KLYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 83

Query: 79 KL 80
          +L
Sbjct: 84 EL 85


>gi|25028411|ref|NP_738465.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
 gi|23493696|dbj|BAC18665.1| putative transcription regulator [Corynebacterium efficiens
          YS-314]
          Length = 108

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R+ R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 22 PEPLLREALGAALRSFRADKGITLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 81

Query: 74 DTPLWKLL 81
             +  +L
Sbjct: 82 GASVADVL 89


>gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 130

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    RK   +TQKE+      ++   S  ETGK T +ID ++ ++   +  L +L+
Sbjct: 9  NLARYRKARHMTQKELAKMLNISRQAYSNYETGKRTPDIDLLLKISQIYNITLDQLI 65


>gi|302672095|ref|YP_003832055.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396568|gb|ADL35473.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 346

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F  N +  R +  ++ K++ +  G     IS  E+GK    I+ +  +A  L   +   
Sbjct: 1  MFEKNLKYYRLKKNMSMKDLADAVGVTSMAISNYESGKRQPEIEIINKMAEVLGIKVVDF 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|293400046|ref|ZP_06644192.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306446|gb|EFE47689.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 134

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++M   +  ++ RK   LTQK++    G ++  I + E G     ++ +  +A+ L+  L
Sbjct: 5  DKMDIKDKIKSYRKSNGLTQKQLGEMIGSSEGMIRQYELGLRNPKMETLTKIANALNINL 64

Query: 78 WKLL 81
          +  +
Sbjct: 65 FDFV 68


>gi|284800921|ref|YP_003412786.1| transcriptional regulator [Listeria monocytogenes 08-5578]
 gi|284056483|gb|ADB67424.1| transcriptional regulator [Listeria monocytogenes 08-5578]
          Length = 108

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R    +TQ ++ ++   ++  IS+ E G    + D +  +A   +     L
Sbjct: 1  MFGKILKTLRINRGMTQADLGSKLNISKVSISKYENGNQFPDTDTLKRIADIFNVSTDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|238059861|ref|ZP_04604570.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237881672|gb|EEP70500.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 74

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ R +R     +TQ E+ +R G  +  I  +E G+ + +++    +A   + PL  + +
Sbjct: 9  NSIRALRFANGEMTQAELADRVGVTRQTIIAIEQGRYSPSLEVAFQIARVFNVPLDDVFE 68


>gi|257789806|ref|YP_003180412.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317489265|ref|ZP_07947782.1| hypothetical protein HMPREF1023_01481 [Eggerthella sp. 1_3_56FAA]
 gi|257473703|gb|ACV54023.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316911666|gb|EFV33258.1| hypothetical protein HMPREF1023_01481 [Eggerthella sp. 1_3_56FAA]
          Length = 85

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R    LT++ +    G  +  +  +E+G +   +D M  ++  L  PL +L+
Sbjct: 9  FGEAVRMQRAVCNLTKERLSLMVGINRLTLRRIESGDANPTLDVMYRISEGLGVPLSELI 68


>gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
 gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus
          NA1]
          Length = 68

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+   LTQ+E+    G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGVLIEDIF 60


>gi|210610564|ref|ZP_03288490.1| hypothetical protein CLONEX_00680 [Clostridium nexile DSM 1787]
 gi|210152423|gb|EEA83429.1| hypothetical protein CLONEX_00680 [Clostridium nexile DSM 1787]
          Length = 106

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+IRK+  L  +E+  +TG + S + ++E G   +++ N+ +L    +T    LL
Sbjct: 12 IRDIRKDKGLLIEEVAAKTGISVSTLGQVEQGGRNLSMKNLYMLMEVYETDANSLL 67


>gi|114569540|ref|YP_756220.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340002|gb|ABI65282.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 67

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R +R E + +Q E+  R G ++  I+ +ETGK   ++     LA   +  +  +  P
Sbjct: 3  NRLRVLRAERRWSQAELGERVGVSRQAINAVETGKHDPSLTLAFALAGAFELAIEAVFDP 62


>gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM]
 gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC
          4796]
 gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus
          NCFM]
 gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC
          4796]
          Length = 321

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK++ L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|84503225|ref|ZP_01001310.1| hypothetical protein OB2597_16722 [Oceanicola batsensis HTCC2597]
 gi|84388466|gb|EAQ01415.1| hypothetical protein OB2597_16722 [Oceanicola batsensis HTCC2597]
          Length = 75

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +A L QK++ +R    QS I+ LE+G+  +++  +++LA  +    ++LL
Sbjct: 10 ARIKAGLGQKDLADRLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPFQLL 62


>gi|331702633|ref|YP_004399592.1| helix-turn-helix domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129976|gb|AEB74529.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL
          B-30929]
          Length = 110

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     +  R++   TQ  +      ++  IS+ E G +  +I+ +I L+      L  
Sbjct: 1  MVLGQRIKEEREKLGWTQDRLAEELHVSRQAISKWEVGSAYPDIERLIQLSDLFGVSLDS 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14]
          Length = 116

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + KE  ++QKE   RTG A+S IS+ +  ++    D ++I+   LD   ++LL
Sbjct: 10 ELLKEKGMSQKEFAQRTGIAESSISDWKKKRTNPVSDKILIICEVLDVTPYELL 63


>gi|288917479|ref|ZP_06411845.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288351182|gb|EFC85393.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 98

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 4  RKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          R+  EP   +     R+ F    + R +R+    +Q+E+    G  QS ++  E G +  
Sbjct: 13 RRMGEPGARETYQAARLAFELGRSVRELRQRRGWSQEELARAAGMTQSAVARFEAGGTVP 72

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
           +  +  LA  LD  L   + P
Sbjct: 73 TLPVLERLAEALDADLDMRVIP 94


>gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
 gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1]
          Length = 97

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  RK+  +TQ+E+ +R G  +S I  +E G ++  ++ +  ++  L+TP
Sbjct: 27 AAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80


>gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 188

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R+E   +       TG +++ + ++E G+S+  +  +  +A  ++      ++
Sbjct: 10 GNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNVAFSTFIE 69

Query: 83 P 83
          P
Sbjct: 70 P 70


>gi|240143278|ref|ZP_04741879.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257204756|gb|EEV03041.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 210

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RN R  A+LTQKE+  R G  +S I   E G    +   ++ +A+ L+   + L  P
Sbjct: 13 IRNFRIAAELTQKELAERCGLNESTIRNYELGNRYPDEATLLNIANHLNVSFFALSDP 70


>gi|172064748|ref|YP_001812398.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171998233|gb|ACB69149.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 115

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R  R+  K +Q E+  +     S I+  E+G    + D +  LA+ L+     L
Sbjct: 10 LFQERLRAARELRKWSQGELAEKASMPPSSIAHFESGSRKPSFDTLRRLANALEVTTDYL 69

Query: 81 L 81
          L
Sbjct: 70 L 70


>gi|119960674|ref|YP_949077.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119947533|gb|ABM06444.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 421

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    R  R E  LTQ E+     ++ S+IS LETG+     + +  LA  L+     L
Sbjct: 5  FGEKLRAERLERGLTQAELGKNL-YSPSYISLLETGRREPTAEVIEELARRLELAPKAL 62


>gi|89889583|ref|ZP_01201094.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7]
 gi|89517856|gb|EAS20512.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7]
          Length = 251

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + IR    L+Q+   +     +  +   E G+S   I+ +I +A+     +  +L
Sbjct: 4  FGKNIKKIRGIKSLSQQAFADLFDLKRGTLGAYEEGRSEPKIETIIKIANYFSISIDDIL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|28379010|ref|NP_785902.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1]
 gi|28271848|emb|CAD64753.1| prophage Lp2 protein 10 [Lactobacillus plantarum WCFS1]
          Length = 75

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   LTQ+E+      + + +  +E G+   + D ++ L+  L+  +  LL+
Sbjct: 4  KLKYYREAMNLTQEELARHAKVSVAMVQSMENGRRKGSTDTILKLSDALNVTVDDLLR 61


>gi|86143064|ref|ZP_01061486.1| regulatory protein [Leeuwenhoekiella blandensis MED217]
 gi|85830509|gb|EAQ48968.1| regulatory protein [Leeuwenhoekiella blandensis MED217]
          Length = 244

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+ + L+QK++    G  Q   S +E G+++I  ++++ L+     P  +
Sbjct: 1  MSISKQLKTLRESSSLSQKKVAEELGITQGAYSLIENGQNSITTEHLLTLSKLYSVPTDR 60

Query: 80 LLK 82
          +LK
Sbjct: 61 ILK 63


>gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae
          A909]
 gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B]
 gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae
          A909]
 gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B]
          Length = 204

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE KLTQ+E+    G ++  I   E G+  I  D    LA   +  +  LL
Sbjct: 2  NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLL 59


>gi|325524090|gb|EGD02259.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 244

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+EAK T  E+      +  ++S++E   + I+I +++ +A  L+ PL  L+
Sbjct: 9  GQRIRRLRREAKKTLLEVATEARLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 67


>gi|319946290|ref|ZP_08020529.1| transcriptional regulator [Streptococcus australis ATCC 700641]
 gi|319747546|gb|EFV99800.1| transcriptional regulator [Streptococcus australis ATCC 700641]
          Length = 124

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 21 QKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 78


>gi|315612250|ref|ZP_07887164.1| helix-turn-helix domain protein [Streptococcus sanguinis ATCC
          49296]
 gi|331267212|ref|YP_004326842.1| transcriptional regulator [Streptococcus oralis Uo5]
 gi|315315643|gb|EFU63681.1| helix-turn-helix domain protein [Streptococcus sanguinis ATCC
          49296]
 gi|326683884|emb|CBZ01502.1| transcriptional regulator [Streptococcus oralis Uo5]
          Length = 288

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F N ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGNVYKEIRESKGLTQEEVCGDV-LSRTSLSKIESGKTTPKYENMEFLLRQVNMTFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|300727575|ref|ZP_07060965.1| helix-turn-helix domain protein [Prevotella bryantii B14]
 gi|299775164|gb|EFI71766.1| helix-turn-helix domain protein [Prevotella bryantii B14]
          Length = 161

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +R    N  + IR+E  +  +++    G   + +S +E G+ ++ +D +  +A  L  
Sbjct: 95  DRARIGNRIKEIREERGIEARDLARLVGIDAANLSRIENGRYSVGLDILAKIATALGK 152


>gi|289642165|ref|ZP_06474316.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289508011|gb|EFD28959.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 286

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ RK A ++ +++  + G +  ++S++E G    + + +  +A  L      L
Sbjct: 13 IRDQRKAAHISVRQLARQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL 67


>gi|262404323|ref|ZP_06080878.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586]
 gi|262349355|gb|EEY98493.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586]
          Length = 181

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  + +RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKVLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 170

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +++R E   TQ+E+  + G     IS  E G+    +D ++ L    +     LL
Sbjct: 5  SRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGERVPPLDIIVKLVQIFNVSSDYLL 62


>gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583]
 gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583]
          Length = 336

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +   N+RK A  +Q+E+  + G ++  IS+ E  +S  +++ ++ L+         
Sbjct: 1  MILADKIVNLRKRAGWSQEELAEKMGVSRQSISKWEGAQSVPDMNRILKLSEVFCVSTDY 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|225019957|ref|ZP_03709149.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum
          DSM 5476]
 gi|224947321|gb|EEG28530.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum
          DSM 5476]
          Length = 125

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     +++R +A L Q+++ +     QS IS  E G +  ++D +I LA   +     
Sbjct: 1  MIISQRLKDLRSDADLNQQDVADAVNVTQSSISNYELGVNLPDLDVVIKLAKFFNVSSDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|254486081|ref|ZP_05099286.1| regulator of the anaerobic catobolism of benzoate BzdR
          [Roseobacter sp. GAI101]
 gi|214042950|gb|EEB83588.1| regulator of the anaerobic catobolism of benzoate BzdR
          [Roseobacter sp. GAI101]
          Length = 296

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           +P      L +R+      R  RK   L ++ +   +G +  ++++LE G+  I++  +
Sbjct: 5  AQPIDPGEELIQRL--AVRVREARKARGLPRRVLSEMSGVSPRYLAQLEAGEGNISVILL 62

Query: 67 IILAHTLDTPLWKLL 81
            +A  LD  +  LL
Sbjct: 63 QRVAQALDLRVEMLL 77


>gi|169833987|ref|YP_001694730.1| Cro/CI family transcriptional regulator [Streptococcus pneumoniae
          Hungary19A-6]
 gi|168996489|gb|ACA37101.1| transcriptional regulator, Cro/CI family [Streptococcus
          pneumoniae Hungary19A-6]
          Length = 409

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens
          str. 13]
 gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium
          perfringens str. 13]
          Length = 367

 Score = 48.5 bits (114), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  RK+ KLTQ+++  + G A+S +S  E G    NI  +I L+  ++  +  L+
Sbjct: 9  FSENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLI 68


>gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 182

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   + +  
Sbjct: 3  VGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFF 62


>gi|311063744|ref|YP_003970469.1| transcriptional regulator [Bifidobacterium bifidum PRL2010]
 gi|310866063|gb|ADP35432.1| Transcriptional regulator [Bifidobacterium bifidum PRL2010]
          Length = 415

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  +TQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|313114704|ref|ZP_07800206.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
 gi|310622929|gb|EFQ06382.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii
          KLE1255]
          Length = 231

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  +TQK+     G +Q+ +S  E G     +D ++ +A   +     LL
Sbjct: 3  FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62


>gi|310286841|ref|YP_003938099.1| transcriptional regulator with helix-turn-helix domain
          [Bifidobacterium bifidum S17]
 gi|309250777|gb|ADO52525.1| Transcriptional regulator with helix-turn-helix domain
          [Bifidobacterium bifidum S17]
          Length = 415

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  +TQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|301632617|ref|XP_002945378.1| PREDICTED: hypothetical protein LOC100487190 [Xenopus (Silurana)
          tropicalis]
          Length = 81

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R E   +Q ++  R G  ++++S +E G+++ ++  ++ L   LD     +L
Sbjct: 9  LGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVRMLMRLCMALDVRTADVL 68


>gi|294792860|ref|ZP_06758007.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 6_1_27]
 gi|294456759|gb|EFG25122.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 6_1_27]
          Length = 153

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  L+      L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|291518928|emb|CBK74149.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 105

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    +N R    +TQ ++ N       +IS +E G++ +++  +I  +  +   L +L+
Sbjct: 5  YGEQIKNYRIGLGMTQNQVANALEVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELV 64


>gi|291460791|ref|ZP_06600181.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
 gi|291416595|gb|EFE90314.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
          F0262]
          Length = 64

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R    L+Q+++ +  G ++  I+ +E G     I     +   L   L +L 
Sbjct: 5  RMKSARAAKDLSQQQLADLVGVSRQTINAIEKGDYNPTIRLCTAICRALSKTLDELF 61


>gi|297543548|ref|YP_003675850.1| XRE family transcriptional regulator [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296841323|gb|ADH59839.1| transcriptional regulator, XRE family [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R + KLTQKE+  + G    +IS++E G     ++  I +A+  +T +  + 
Sbjct: 2  NKLKELRIKYKLTQKELAKKLGVTPDYISQIE-GGRIPGMETAIKIANFFNTTIDDIF 58


>gi|254784572|ref|YP_003072000.1| XRE family transcriptional regulator [Teredinibacter turnerae
          T7901]
 gi|237683453|gb|ACR10717.1| transcriptional regulator, XRE family [Teredinibacter turnerae
          T7901]
          Length = 512

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63
           + +++R+        RN+RK   LT +++ +R          + S++S +E GK   + 
Sbjct: 3  DTKSLMRKAHFLGTKIRNLRKRNNLTIEDLSSRCVKVDAESAPSVSYLSMIERGKRVPSE 62

Query: 64 DNMIILAHTLDTPL 77
            + ++A   + P 
Sbjct: 63 SMLEVIARVFEKPP 76


>gi|238018698|ref|ZP_04599124.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC
          17748]
 gi|313893193|ref|ZP_07826770.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
 gi|237865169|gb|EEP66459.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC
          17748]
 gi|313442546|gb|EFR60961.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
          Length = 153

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  L+      L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|224282399|ref|ZP_03645721.1| Xre-type transcriptional regulator [Bifidobacterium bifidum NCIMB
          41171]
 gi|313139541|ref|ZP_07801734.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
          41171]
 gi|313132051|gb|EFR49668.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
          41171]
          Length = 415

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  +TQ+ +    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRTNLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 181

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R++   + + +  R   + S +S++E G+++ +I  +  +   L  P+  + 
Sbjct: 6  KKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQNSPSIATLEKICAALQIPIAAIF 63


>gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC
          29799]
 gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC
          29799]
          Length = 94

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RK   +TQ+E+      ++  +  LE G+   +I     +A   +T + ++ 
Sbjct: 29 NRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYNPSILLAFKIARLFETTIEEVF 86


>gi|23006264|ref|ZP_00048663.1| COG0766: UDP-N-acetylglucosamine enolpyruvyl transferase
          [Magnetospirillum magnetotacticum MS-1]
          Length = 216

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   LTQ ++  R G +QS +  +E G   ++++ +  +   LD+ +  L 
Sbjct: 12 VGALIRGARQNRGLTQTQLAERLGTSQSAVHRIEQGSQNLSLEMLNRIGLALDSEIISLG 71

Query: 82 KP 83
           P
Sbjct: 72 GP 73


>gi|293377825|ref|ZP_06624010.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecium PC4.1]
 gi|292643535|gb|EFF61660.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecium PC4.1]
          Length = 123

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R   K+TQ+E+ ++ G  +   +  E+GK   +   +  LA+  D     L
Sbjct: 1  MFPEKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|227874832|ref|ZP_03992985.1| hypothetical protein HMPREF0577_0286 [Mobiluncus mulieris ATCC
          35243]
 gi|298345795|ref|YP_003718482.1| hypothetical protein HMPREF0573_10669 [Mobiluncus curtisii ATCC
          43063]
 gi|304390501|ref|ZP_07372454.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|306818129|ref|ZP_07451860.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
 gi|315654474|ref|ZP_07907381.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
          51333]
 gi|315657708|ref|ZP_07910589.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|227844607|gb|EEJ54763.1| hypothetical protein HMPREF0577_0286 [Mobiluncus mulieris ATCC
          35243]
 gi|298235856|gb|ADI66988.1| hypothetical protein HMPREF0573_10669 [Mobiluncus curtisii ATCC
          43063]
 gi|304326257|gb|EFL93502.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304649093|gb|EFM46387.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
 gi|315491227|gb|EFU80845.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC
          51333]
 gi|315491711|gb|EFU81321.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 84

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
            ++  +  +   F    R  R+   LTQ+ + +  G  +  I+ LE+G  ++ +D  + 
Sbjct: 3  SVITRVVASDTAKFAQLVRFHRQAFGLTQQRLADMAGVTRPAITRLESGAPSVRLDTALK 62

Query: 69 LAHTLDTP 76
          +   L   
Sbjct: 63 VLDALGVE 70


>gi|254286899|ref|ZP_04961851.1| transcriptional regulator, HTH_3 family [Vibrio cholerae
          AM-19226]
 gi|150423049|gb|EDN14998.1| transcriptional regulator, HTH_3 family [Vibrio cholerae
          AM-19226]
          Length = 181

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|146300851|ref|YP_001195442.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146155269|gb|ABQ06123.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 121

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + IR+    TQ+ +  R G  Q+  S++E G ST++ + +  +A   +  +  ++K
Sbjct: 8  NIKIIRELKNYTQEYMALRLGITQAGYSKIEKGSSTVSFEKLEEIAQVFEMDVRNIIK 65


>gi|53715744|ref|YP_101736.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60683678|ref|YP_213822.1| putative transcriptional regulator [Bacteroides fragilis NCTC
          9343]
 gi|253566443|ref|ZP_04843896.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|255011438|ref|ZP_05283564.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|265767314|ref|ZP_06094980.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|313149255|ref|ZP_07811448.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
 gi|52218609|dbj|BAD51202.1| transcriptional regulator [Bacteroides fragilis YCH46]
 gi|60495112|emb|CAH09931.1| putative transcriptional regulator [Bacteroides fragilis NCTC
          9343]
 gi|251944615|gb|EES85090.1| transcriptional regulator [Bacteroides sp. 3_2_5]
 gi|263252619|gb|EEZ24131.1| transcriptional regulator [Bacteroides sp. 2_1_16]
 gi|301165190|emb|CBW24760.1| putative transcriptional regulator [Bacteroides fragilis 638R]
 gi|313138022|gb|EFR55382.1| transcriptional regulator [Bacteroides fragilis 3_1_12]
          Length = 191

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRENKGISIEELAERSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|126173345|ref|YP_001049494.1| cupin 2 domain-containing protein [Shewanella baltica OS155]
 gi|152999697|ref|YP_001365378.1| cupin 2 domain-containing protein [Shewanella baltica OS185]
 gi|160874315|ref|YP_001553631.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|217974352|ref|YP_002359103.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|304409280|ref|ZP_07390900.1| Cupin 2 conserved barrel domain protein [Shewanella baltica
          OS183]
 gi|307303638|ref|ZP_07583391.1| Cupin 2 conserved barrel domain protein [Shewanella baltica
          BA175]
 gi|125996550|gb|ABN60625.1| transcriptional regulator, XRE family with cupin sensor
          [Shewanella baltica OS155]
 gi|151364315|gb|ABS07315.1| Cupin 2 conserved barrel domain protein [Shewanella baltica
          OS185]
 gi|160859837|gb|ABX48371.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
 gi|217499487|gb|ACK47680.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
 gi|304351798|gb|EFM16196.1| Cupin 2 conserved barrel domain protein [Shewanella baltica
          OS183]
 gi|306912536|gb|EFN42959.1| Cupin 2 conserved barrel domain protein [Shewanella baltica
          BA175]
 gi|315266550|gb|ADT93403.1| Cupin 2 conserved barrel domain protein [Shewanella baltica
          OS678]
          Length = 182

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + + +RK   L+Q+E+  R G   S IS +E    + ++ ++  +   +   L    
Sbjct: 4  GASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVDFF 62


>gi|53725908|ref|YP_103548.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|67643822|ref|ZP_00442565.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|121601001|ref|YP_992298.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124383395|ref|YP_001026857.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126450501|ref|YP_001079856.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|166999969|ref|ZP_02265798.1| DNA-binding protein [Burkholderia mallei PRL-20]
 gi|254175449|ref|ZP_04882109.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254202232|ref|ZP_04908595.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|254207565|ref|ZP_04913915.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|52429331|gb|AAU49924.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121229811|gb|ABM52329.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124291415|gb|ABN00684.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126243371|gb|ABO06464.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147746479|gb|EDK53556.1| DNA-binding protein [Burkholderia mallei FMH]
 gi|147751459|gb|EDK58526.1| DNA-binding protein [Burkholderia mallei JHU]
 gi|160696493|gb|EDP86463.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|238525262|gb|EEP88690.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243064084|gb|EES46270.1| DNA-binding protein [Burkholderia mallei PRL-20]
          Length = 187

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+ + T   +   TG  +S++S++E G S  +I   + L+  L   + +L 
Sbjct: 4  RLKLLRKQKEWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLF 60


>gi|331005212|ref|ZP_08328606.1| Transcriptional regulator, MerR family [gamma proteobacterium
          IMCC1989]
 gi|330420994|gb|EGG95266.1| Transcriptional regulator, MerR family [gamma proteobacterium
          IMCC1989]
          Length = 180

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              + +RK   L+Q+E+  R G   S +S +E G+ + ++ ++  L
Sbjct: 6  AVRLQKVRKIYGLSQRELAKRAGVTNSSVSMIEQGRVSPSLSSLEKL 52


>gi|323650433|gb|ADX97290.1| C.EcoNIP [Escherichia coli]
          Length = 78

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           ++ R + KL Q+E+ +  G  Q+++S+ E+G   +++  +  +   L   +  ++
Sbjct: 16 LKSARIKKKLPQEELASLLGKDQTYVSKYESGIRRLDVVEVFDICKALGINMTDII 71


>gi|302562687|ref|ZP_07315029.1| helix-turn-helix domain-containing protein [Streptomyces
          griseoflavus Tu4000]
 gi|302480305|gb|EFL43398.1| helix-turn-helix domain-containing protein [Streptomyces
          griseoflavus Tu4000]
          Length = 199

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +R+   +T  ++   TG + S +S +ETG+    ++ ++ LA      L +L
Sbjct: 14 GPRLRAVRERRGVTLTDVCCATGISPSTLSRIETGRRKPTLEVVLQLAKEYGVGLDEL 71


>gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
 gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61]
 gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
 gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
          Length = 97

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 30/54 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  RK+  ++Q+E+ +R G  +S I  +E G ++  ++ +  ++  L+TP
Sbjct: 27 AAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80


>gi|260583645|ref|ZP_05851393.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC
          700633]
 gi|260158271|gb|EEW93339.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC
          700633]
          Length = 133

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +R+E +L+Q+E+    G +QS +   E+G+  I  D ++ L+   +  +  LL
Sbjct: 7  LSELRREKRLSQEELAKIIGTSQSSVGHWESGRRNIPQDKLLQLSKYFNVSIDYLL 62


>gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC
          27750]
 gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC
          27750]
          Length = 177

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++    +  + +RKE  +TQ+++  +   +   +S  ETG +  +I  +  LA   D  +
Sbjct: 8  DQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSNMPDISLLAQLADFYDVSI 67

Query: 78 WKLL 81
           +++
Sbjct: 68 PEII 71


>gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 214

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R++ + T  E+   TG + S +S LE+G     ++ ++ LA      L  L+
Sbjct: 33 VGPRLRALRRQRETTLAELSAATGISVSTLSRLESGTRRPTLEQLLPLARAHGVTLDDLV 92


>gi|229021194|ref|ZP_04177833.1| transcriptional regulator, XRE [Bacillus cereus AH1273]
 gi|228740088|gb|EEL90446.1| transcriptional regulator, XRE [Bacillus cereus AH1273]
          Length = 108

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+      ++S I   E  +   + + +I +A   +     
Sbjct: 2  KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme
          DSM 15981]
 gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme
          DSM 15981]
          Length = 63

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +RKE  L+Q+E       ++  +S +E GK   +++    +A      + +L 
Sbjct: 1  MEQLRKEMGLSQEEFARALRVSRQTVSSIENGKYNPSLELAFQIADFFQKTIEELF 56


>gi|220930162|ref|YP_002507071.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|220000490|gb|ACL77091.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
          H10]
          Length = 108

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R+ R+   LT++        + +++ ++E G+  ++++ +I ++  L   L  L+K
Sbjct: 7  GKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHISLDYLIK 66


>gi|209965957|ref|YP_002298872.1| hypothetical protein RC1_2685 [Rhodospirillum centenum SW]
 gi|209959423|gb|ACJ00060.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 480

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 33/60 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ +  +  R +R++ KLTQ ++ +  G + S+++ +E+ +  + +  ++ +    D  L
Sbjct: 4  KKAMLGHKVRRLRRDLKLTQAQMADELGISPSYLNLIESNQRPLTVPLLLKIGQIYDVDL 63


>gi|170016279|ref|YP_001723001.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169804961|gb|ACA83577.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 199

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     + IR+   LTQ+++       +  IS  E GKS   I +++ +++  +  L +
Sbjct: 1  MLIGVKIKMIREAFDLTQEQLGKELHLTRQTISSWENGKSYPGITDILSISNKYNVSLDE 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LMK 63


>gi|119509218|ref|ZP_01628368.1| transcriptional regulator [Nodularia spumigena CCY9414]
 gi|119466060|gb|EAW46947.1| transcriptional regulator [Nodularia spumigena CCY9414]
          Length = 538

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 33/75 (44%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           + ++ R              +        RK  +L+Q+E+   TG +QSWI ++E G+  
Sbjct: 458 LQKKPRRTVKSRRKTNTISDLPGEQILQARKNLQLSQRELAKLTGKSQSWIRDVENGRLK 517

Query: 61  INIDNMIILAHTLDT 75
           +  ++  +L   L+ 
Sbjct: 518 VKAEDQALLRKVLNI 532


>gi|146302466|ref|YP_001197057.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146156884|gb|ABQ07738.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 132

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N   IR+   + Q  + +  G +Q  IS +ET + T++ D ++ +A  L  
Sbjct: 11 GRNISRIRELRGMKQGALADAIGTSQQTISSIETSE-TVDFDKLVQIAKALGV 62


>gi|57233927|ref|YP_182049.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
 gi|57224375|gb|AAW39432.1| DNA-binding protein [Dehalococcoides ethenogenes 195]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R    LTQ+E+ ++ G  +  +  +E GK + +++    +A     P+ ++  
Sbjct: 3  NKLRVLRAIHNLTQEELADKLGITRQTVIAIEWGKYSPSLELAFKIASLFKAPIEEIFT 61


>gi|115353126|ref|YP_774965.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115283114|gb|ABI88631.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ambifaria AMMD]
          Length = 269

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+EAK T  E+      +  ++S++E   + I++ +++ +A  L+ PL  L++
Sbjct: 9  GQRIRRLRREAKKTLLEVATEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIE 68


>gi|326390755|ref|ZP_08212308.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993149|gb|EGD51588.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKEA LTQ EI  + G A++  + +E G    + D    +   L      + 
Sbjct: 5  LKKARKEAGLTQAEIAKKVGIARTSYTNIELGIKNPSFDVATKIKRVLRVNNDDIF 60


>gi|326330081|ref|ZP_08196394.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
 gi|325952126|gb|EGD44153.1| putative Helix-turn-helix domain protein [Nocardioidaceae
          bacterium Broad-1]
          Length = 103

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R E  +T +E+      +  +ISE+E G+   + + +  L   LD  L 
Sbjct: 13 RRLLGEVLRAQRLERGMTLREVSAEARVSLGYISEVERGQKEASSELLASLCSALDVALS 72

Query: 79 KLLK 82
           +L+
Sbjct: 73 DVLR 76


>gi|300933053|ref|ZP_07148309.1| putative transcriptional regulator ClgR [Corynebacterium
          resistens DSM 45100]
          Length = 123

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 29/75 (38%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R    P         R       R  R ++  + +E+ +    +  ++SE+E G+  +
Sbjct: 10 PMRSDAHPVAPAQEPLLREALGATLREYRSQSGFSLRELASLASVSPGYLSEIERGRKEV 69

Query: 62 NIDNMIILAHTLDTP 76
          + + +  + H +   
Sbjct: 70 SSELLASVCHGMGIS 84


>gi|266626094|ref|ZP_06119029.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
 gi|288861999|gb|EFC94297.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
          Length = 102

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK   L+Q+++    G ++  +++ E   S  N DN++ L+   + PL +L+
Sbjct: 4  LGKRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLNELV 63


>gi|311739653|ref|ZP_07713488.1| probable transcriptional regulator ClgR [Corynebacterium
          pseudogenitalium ATCC 33035]
 gi|311305469|gb|EFQ81537.1| probable transcriptional regulator ClgR [Corynebacterium
          pseudogenitalium ATCC 33035]
          Length = 120

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R +  +T +E+      +  ++SELE G+  ++ + +  + H LD  + 
Sbjct: 32 REALGLTLRAFRADKGVTLRELAGVARVSPGYLSELERGRKEVSSELLASVCHALDCSVS 91

Query: 79 KLL 81
           +L
Sbjct: 92 DVL 94


>gi|221200648|ref|ZP_03573689.1| DNA-binding protein [Burkholderia multivorans CGD2M]
 gi|221208477|ref|ZP_03581479.1| DNA-binding protein [Burkholderia multivorans CGD2]
 gi|221210397|ref|ZP_03583377.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221169353|gb|EEE01820.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221171665|gb|EEE04110.1| DNA-binding protein [Burkholderia multivorans CGD2]
 gi|221179220|gb|EEE11626.1| DNA-binding protein [Burkholderia multivorans CGD2M]
          Length = 201

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 29/67 (43%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  +           +  R +R+  K T  E     G ++ ++S++E G ++ ++ ++  
Sbjct: 12 PTENSRSAVAAAALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAG 71

Query: 69 LAHTLDT 75
          +A  L  
Sbjct: 72 IAQALGV 78


>gi|152989688|ref|YP_001345474.1| hypothetical protein PSPA7_0078 [Pseudomonas aeruginosa PA7]
 gi|150964846|gb|ABR86871.1| conserved domain protein [Pseudomonas aeruginosa PA7]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      
Sbjct: 6  KALGERIRMQRKACRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELACDPSS 65

Query: 80 LL 81
          LL
Sbjct: 66 LL 67


>gi|161519811|ref|YP_001583238.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160343861|gb|ABX16946.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
          Length = 193

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 29/67 (43%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  +           +  R +R+  K T  E     G ++ ++S++E G ++ ++ ++  
Sbjct: 4  PTENSRSAVAAAALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAG 63

Query: 69 LAHTLDT 75
          +A  L  
Sbjct: 64 IAQALGV 70


>gi|15903016|ref|NP_358566.1| hypothetical protein spr0972 [Streptococcus pneumoniae R6]
 gi|116515940|ref|YP_816428.1| hypothetical protein SPD_0951 [Streptococcus pneumoniae D39]
 gi|148989105|ref|ZP_01820495.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae
          SP6-BS73]
 gi|149019666|ref|ZP_01834985.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae
          SP23-BS72]
 gi|168491958|ref|ZP_02716101.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|168494498|ref|ZP_02718641.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|221231810|ref|YP_002510962.1| DNA_binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854561|ref|YP_002736073.1| hypothetical protein SPJ_1004 [Streptococcus pneumoniae JJA]
 gi|15458585|gb|AAK99776.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076516|gb|ABJ54236.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|147925328|gb|EDK76406.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147931041|gb|EDK82021.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae
          SP23-BS72]
 gi|183573788|gb|EDT94316.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|183575609|gb|EDT96137.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|220674270|emb|CAR68810.1| putative DNA_binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225724252|gb|ACO20105.1| conserved domain protein [Streptococcus pneumoniae JJA]
 gi|301794185|emb|CBW36602.1| putative DNA_binding protein [Streptococcus pneumoniae INV104]
 gi|332202922|gb|EGJ16990.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 73

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R++R++  LTQK+I     F  S  +++E G+ T+  D ++ L++  D     LL+
Sbjct: 3  RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLLE 61


>gi|21223966|ref|NP_629745.1| transcriptional regulator [Streptomyces coelicolor A3(2)]
 gi|3192004|emb|CAA19403.1| putative transcriptional regulator [Streptomyces coelicolor
          A3(2)]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R    +  R IR++  +TQ ++    G   + IS  E G    +++ +  +A  L  
Sbjct: 1  MPARTFSPDALRQIRRQRGVTQYKLAASLGVHNTAISHYENGHRRPDVETLATIADVLGA 60

Query: 76 PLWKLLK 82
           +   + 
Sbjct: 61 RMDDFVT 67


>gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505]
 gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505]
          Length = 146

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N   +RK+ + TQ+ + N+ G ++  I++ E      +I + + LAH  D  +  L
Sbjct: 1  MINSNIATLRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCVRLAHVFDVSIDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|301168264|emb|CBW27854.1| putative DNA binding protein [Bacteriovorax marinus SJ]
          Length = 95

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++    +  +  R+  +L+Q  +    G +Q+ IS +E GK  I +   I L       L
Sbjct: 13 KKETAGDILKRYRESFELSQAALAELIGTSQNNISAIENGKREIGVSVAIKLCAIFPVTL 72

Query: 78 WKLLKP 83
           KLL P
Sbjct: 73 EKLLIP 78


>gi|260557994|ref|ZP_05830206.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
 gi|260408504|gb|EEX01810.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
          Length = 250

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  R +R +A L QKE+  +TG  QS IS+ E     +  D +  +A  L+
Sbjct: 17 GDRLRFLRTQAGLNQKELSKKTGVGQSSISDFENNVKIMAADKLAAIAKALN 68


>gi|229115222|ref|ZP_04244632.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3]
 gi|228668362|gb|EEL23794.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3]
          Length = 404

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGAKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|227522690|ref|ZP_03952739.1| hypothetical protein HMPREF0519_0399 [Lactobacillus hilgardii
          ATCC 8290]
 gi|227090138|gb|EEI25450.1| hypothetical protein HMPREF0519_0399 [Lactobacillus hilgardii
          ATCC 8290]
          Length = 103

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R +RK   +T  E+  + GF+QS+I+  ET ++  N++ +  +   L T
Sbjct: 7  GEKLRKLRKSRGITAAELSAKMGFSQSYINHFETDRAVPNVNALGEILKYLGT 59


>gi|213424691|pdb|3F51|A Chain A, Crystal Structure Of The Clp Gene Regulator Clgr From
          Corynebacterium Glutamicum
 gi|213424692|pdb|3F51|B Chain B, Crystal Structure Of The Clp Gene Regulator Clgr From
          Corynebacterium Glutamicum
 gi|213424693|pdb|3F51|C Chain C, Crystal Structure Of The Clp Gene Regulator Clgr From
          Corynebacterium Glutamicum
 gi|213424694|pdb|3F51|D Chain D, Crystal Structure Of The Clp Gene Regulator Clgr From
          Corynebacterium Glutamicum
 gi|213424695|pdb|3F51|E Chain E, Crystal Structure Of The Clp Gene Regulator Clgr From
          Corynebacterium Glutamicum
 gi|213424696|pdb|3F51|F Chain F, Crystal Structure Of The Clp Gene Regulator Clgr From
          Corynebacterium Glutamicum
 gi|213424697|pdb|3F52|A Chain A, Crystal Structure Of The Clp Gene Regulator Clgr From C.
          Glutamicum
 gi|213424698|pdb|3F52|E Chain E, Crystal Structure Of The Clp Gene Regulator Clgr From C.
          Glutamicum
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R+ R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80

Query: 74 DTPLWKLL 81
             +  +L
Sbjct: 81 GASVADVL 88


>gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70]
          Length = 97

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 30/54 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  RK+  ++Q+E+ +R G  +S I  +E G ++  ++ +  ++  L+TP
Sbjct: 27 AAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80


>gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
 gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N R +RK  KL+Q+++  +   ++  I++ E G++  +I    +L       + 
Sbjct: 2  KNMIGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIPDIYKFKMLGDIFQVTID 61

Query: 79 KL 80
          +L
Sbjct: 62 QL 63


>gi|34500490|ref|NP_904261.1| hypothetical protein pUO1_12 [Delftia acidovorans]
 gi|319765115|ref|YP_004129051.1| hypothetical protein Alide_4472 [Alicycliphilus denitrificans BC]
 gi|34013311|dbj|BAC81984.1| TrbA [Delftia acidovorans]
 gi|317119802|gb|ADV02289.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC]
          Length = 120

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   +  E  +T+KE+ NR+G + S++S+L TGK+  ++  M  +A  
Sbjct: 5  IFFTNVLRLLDERHMTKKELSNRSGVSISFLSDLTTGKANPSLKVMEDIAQA 56


>gi|103486719|ref|YP_616280.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
          RB2256]
 gi|98976796|gb|ABF52947.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
          RB2256]
          Length = 261

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R  R   +++Q ++   +  +   +S +ETG+S  +   +  +A  L+ P
Sbjct: 6  VGEQLREWRVRRRMSQMDLALESEISTRHLSFIETGRSRPSALMLQRIADCLEVP 60


>gi|331090730|ref|ZP_08339577.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330399838|gb|EGG79497.1| hypothetical protein HMPREF9477_00220 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 156

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  LTQ E+    G +   IS  E  K+  +I     L   LD  + +LL
Sbjct: 14 RKEKGLTQVELAEMLGVSDKSISRWENAKTMPDISLYEPLCEALDIQVAELL 65


>gi|319935739|ref|ZP_08010169.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1]
 gi|319809288|gb|EFW05729.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1]
          Length = 154

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RK+   +Q+E+ +     +  IS  E+ +    +D   +LA+  +  L  L
Sbjct: 1  MLGEKLMRLRKKHGYSQQEVADLISVTRQTISNWESDQGIPTLDKARMLANLYNVSLDDL 60


>gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15]
          Length = 327

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  RK A  TQ+++  R G  Q+ I  LE   S  + +    +A  L   L  
Sbjct: 1  MALGQRLKQARKLAGYTQEQLGERVGLTQAAIGALEKRDSQRS-NKAAEMAEALGVSLLW 59

Query: 80 LL 81
          L+
Sbjct: 60 LV 61


>gi|312868622|ref|ZP_07728816.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
 gi|311095831|gb|EFQ54081.1| DNA-binding helix-turn-helix protein [Lactobacillus oris
          PB013-T2-3]
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK A ++Q E+ N  G ++  IS  E        +    LA  L      L+
Sbjct: 3  NRIRECRKAAGMSQAELGNIVGLSRQAISLYEINLRMPTFEMWECLASALHVSPAYLV 60


>gi|300742499|ref|ZP_07072520.1| toxin-antitoxin system, antitoxin component, Xre family [Rothia
          dentocariosa M567]
 gi|300381684|gb|EFJ78246.1| toxin-antitoxin system, antitoxin component, Xre family [Rothia
          dentocariosa M567]
          Length = 75

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          F    R IRKE +LTQ E+    G +   I ++E GK   +  +++  A  L   L 
Sbjct: 12 FGQRVRRIRKEERLTQLELSYMVGVSDKTIRDIERGKPGPSFGSVLKTAEVLGIYLV 68


>gi|297190852|ref|ZP_06908250.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150643|gb|EFH30705.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 275

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  +L+Q E+  R G +   IS +ETG+S  + D ++ LA  LD P+ +
Sbjct: 14 LRGWRERRRLSQLELALRAGSSARHISFVETGRSRPSEDMVLRLAEHLDVPVRE 67


>gi|307726999|ref|YP_003910212.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1003]
 gi|307587524|gb|ADN60921.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003]
          Length = 303

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A+L  +++  R   +++ + +LE G+  + ID +  LA      L  LL
Sbjct: 21 GERLRAYRIAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLL 78


>gi|239978544|ref|ZP_04701068.1| regulatory protein [Streptomyces albus J1074]
 gi|291450440|ref|ZP_06589830.1| regulatory protein [Streptomyces albus J1074]
 gi|291353389|gb|EFE80291.1| regulatory protein [Streptomyces albus J1074]
          Length = 185

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+  +LT   +  R+G +  ++S++E  ++  ++ ++  +A  L+T   +L+
Sbjct: 9  VGPAVRRRRRALELTLAAVAERSGLSVPFLSQVENQRARPSLRSLEAVADALETTAVELM 68


>gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +R E   + + +   TG + + +S++E G S  ++  +  LA    T +  L
Sbjct: 7  VIGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLRALAGVFGTSVSTL 66

Query: 81 L 81
           
Sbjct: 67 F 67


>gi|73661421|ref|YP_300202.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72493936|dbj|BAE17257.1| putative transcriptional regulator [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 155

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IRKE +LTQ++  N+   ++  +S  E  +   +I+ ++ +A T +  L  L+
Sbjct: 3  FGTQIKMIRKENQLTQEQFGNQLNISRQTVSTWENNRYLPDIEMLVEIAKTFNLSLDDLI 62


>gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. TM1040]
          Length = 204

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R  RK+ KLT + + +R+G +  ++S++E   +T ++  +  ++  LD  L
Sbjct: 12 VGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLAQISAALDVGL 67


>gi|229192131|ref|ZP_04319099.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|228591338|gb|EEK49189.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
          Length = 114

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E   +   ++S +  LE   +  ++D +  +A  L   +  L+
Sbjct: 4  FGENLKKFRSSRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63


>gi|228477619|ref|ZP_04062252.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228250763|gb|EEK09961.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R  RK   L+Q E+    G ++  I+ +E  K    ++  + LA  LDT L  L 
Sbjct: 2  NHVREFRKNLGLSQLELAKSIGVSRQTINMIENNKYNPTLELCLNLAKALDTDLNSLF 59


>gi|227508801|ref|ZP_03938850.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
 gi|227191707|gb|EEI71774.1| transcriptional regulator [Lactobacillus brevis subsp.
          gravesensis ATCC 27305]
          Length = 88

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R+  E +    +  E++         R+ A LTQ E+  R    Q+ I+++E G   ++
Sbjct: 10 KRRDSEFNQMYEVEDEKLQTAVALYKARENAGLTQAELAERAQTTQATIAKIERGD-NVS 68

Query: 63 IDNMIILAHTLDTPLW 78
           + +  +AH L   L 
Sbjct: 69 FEKLSSIAHALGKKLV 84


>gi|225571052|ref|ZP_03780069.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM
          15053]
 gi|225160133|gb|EEG72752.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM
          15053]
          Length = 279

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RKE  LTQK++  +       IS+ E G S  +I  +I LA  LD    +LL
Sbjct: 16 MRKEKNLTQKDLAQKLDVTDKAISKWERGISCPDISLLIPLAKVLDVTTSELL 68


>gi|187934570|ref|YP_001886346.1| hypothetical protein CLL_A2157 [Clostridium botulinum B str.
          Eklund 17B]
 gi|188589133|ref|YP_001921361.1| hypothetical protein CLH_1980 [Clostridium botulinum E3 str.
          Alaska E43]
 gi|251778914|ref|ZP_04821834.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|187722723|gb|ACD23944.1| conserved domain protein [Clostridium botulinum B str. Eklund
          17B]
 gi|188499414|gb|ACD52550.1| conserved domain protein [Clostridium botulinum E3 str. Alaska
          E43]
 gi|243083229|gb|EES49119.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 23 VNNF--RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N   +  R +  +TQK++  + G ++  ++ +E G     I     +   L   L  L
Sbjct: 2  GRNIPIKVARAQLDMTQKQLAEKVGISRQTMNAIEQGDYNPTIKLCRAICKALGKGLDDL 61

Query: 81 L 81
           
Sbjct: 62 F 62


>gi|171778687|ref|ZP_02919783.1| hypothetical protein STRINF_00635 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282644|gb|EDT48068.1| hypothetical protein STRINF_00635 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 65

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    ++Q  +  + G A+  ++ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRVKEFRTNLGISQLTLAKQIGIARQTVNLIENNKYNPSLDLCIKLAEALGTDLNTLF 59


>gi|154252274|ref|YP_001413098.1| XRE family transcriptional regulator [Parvibaculum
          lavamentivorans DS-1]
 gi|154156224|gb|ABS63441.1| transcriptional regulator, XRE family [Parvibaculum
          lavamentivorans DS-1]
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F       RKE   TQ ++  R G +++ ++ +E+G+  + + ++  LA  L      
Sbjct: 8  KAFGRAVATRRKELGFTQADLAGRVGMSRASVANIESGRQNVLLHHVYNLASALQFSKVS 67

Query: 80 LLKP 83
           L P
Sbjct: 68 DLLP 71


>gi|187919345|ref|YP_001888376.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187717783|gb|ACD19006.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 285

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R+ R    ++Q ++    G +Q  IS +E+G+S  +   ++  A  LD PL +
Sbjct: 19 MRHWRDVRGISQLDLSFNAGVSQRHISFIESGRSVPSRQMLMDTAQALDIPLRE 72


>gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51]
 gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 75

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RKE  LTQ+E+  + G     +S+ ET ++  +I  +  L+  LD  + KLL
Sbjct: 2  AKNICRYRKEKGLTQEELARKLGVTFQAVSKWETAQTLPDITLLPGLSQLLDISIDKLL 60


>gi|311031854|ref|ZP_07709944.1| transcriptional regulator SinR [Bacillus sp. m3-13]
          Length = 110

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +  R++ K++  E+  R G A+S++S +E   +S  ++  +  ++  L   +  
Sbjct: 1  MIGERIKKYREQRKMSMSELAERAGVAKSYLSSIERNLQSNPSVQFLEKVSSVLGVNVNT 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|257088817|ref|ZP_05583178.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|256997629|gb|EEU84149.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|315160613|gb|EFU04630.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315579459|gb|EFU91650.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 76

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           + R  R +  LTQK +   TG  ++ I  +E G+S  +    I+LA  L+     L
Sbjct: 12 ESLRAARIKKSLTQKRLAELTGVTETTIRNIENGRSCPSFKLSIMLAKLLNVDFETL 68


>gi|300772891|ref|ZP_07082760.1| XRE family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33861]
 gi|300759062|gb|EFK55889.1| XRE family transcriptional regulator [Sphingobacterium
          spiritivorum ATCC 33861]
          Length = 104

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              +  RK AK+TQ+++  + G  +S+IS +E G S I +  +  L
Sbjct: 44 GEMIKQERKLAKMTQEQLAEKIGAKKSFISRIENGHSDIQLSTLYKL 90


>gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC
          25827]
 gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC
          25827]
          Length = 207

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  R+E  LTQ E+  + G +Q  I  +E G  T    N+I +A  L +    
Sbjct: 1  MSLASRIRQRRQELNLTQTELAEKAGISQQSIESIENG-RTKKPRNIIEIAKALQSHPEW 59

Query: 80 LL 81
          LL
Sbjct: 60 LL 61


>gi|153810652|ref|ZP_01963320.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174]
 gi|149833048|gb|EDM88130.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174]
          Length = 137

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R    +TQKE+    G ++S I   E   ++I +D +  +A    T   +L+
Sbjct: 9  VGQEIKKVRYRMGMTQKELGKLIGKSESQIGAYENASASITLDVLFKIAEVTKTKPEELI 68

Query: 82 K 82
           
Sbjct: 69 T 69


>gi|326802631|ref|YP_004320449.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651355|gb|AEA01538.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R  + L+QK +    G A+  ++ +E  +   +++  I LA  LDT L  L 
Sbjct: 2  NRLKYYRTRSGLSQKALAEEIGVARQTVNMIENDRYNPSLELCIALAKALDTDLNALF 59


>gi|325264127|ref|ZP_08130859.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324030611|gb|EGB91894.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 201

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N +  R + K++Q+ + ++ G ++  +++ E G S     N+  LA   +  + +
Sbjct: 1  MALSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISE 60

Query: 80 LLKP 83
          L+ P
Sbjct: 61 LVDP 64


>gi|304436877|ref|ZP_07396841.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon
          149 str. 67H29BP]
 gi|304370076|gb|EFM23737.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon
          149 str. 67H29BP]
          Length = 86

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF ++ R IRKE K TQKE     G  +    + E GK+    D +I LA   D  L  L
Sbjct: 3  IFKDHLRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLDYL 62

Query: 81 L 81
          +
Sbjct: 63 V 63


>gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 63

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK  KLTQ E+ N  G ++  I+ +E  K    ++  I LA  L  P+  L 
Sbjct: 3  NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYNPTLELAIKLARYLRIPVEDLF 60


>gi|293399898|ref|ZP_06644044.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306298|gb|EFE47541.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 135

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R +A LTQ+ +       +  IS  ET KS  +I ++I L+   +  L KLLK
Sbjct: 4  GVKLKEARLQAGLTQENVAEEIQVTRQTISNWETEKSFPDIVSVIKLSTLYNISLDKLLK 63


>gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252]
 gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252]
          Length = 347

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R    L+ +++    G +Q+ IS+ E G  T +   +I LA  LD     
Sbjct: 1  MSIGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSF 60

Query: 80 LLKP 83
           L+P
Sbjct: 61 FLRP 64


>gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + +R    LTQKE+  ++G   + I   E G  + + + +  ++  LD  +  
Sbjct: 1  MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|223985950|ref|ZP_03635985.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM
          12042]
 gi|223962074|gb|EEF66551.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM
          12042]
          Length = 94

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 29/77 (37%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
                  + +   +  F +     R   ++TQ+E+ +  G ++  I +LE  +   ++ 
Sbjct: 13 PLKSKKGGEPMASNKYRFESKIHVYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSML 72

Query: 65 NMIILAHTLDTPLWKLL 81
           +  +A      +  L 
Sbjct: 73 LVYNIAKVFGVTIEDLF 89


>gi|152996614|ref|YP_001341449.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837538|gb|ABR71514.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1]
          Length = 203

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 6  RDEPHLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          R     + A   +R +         + IR     T +E+  RTG A+S +S++E  + + 
Sbjct: 4  RPSLETATASDPDRFVEPLELGKRVKEIRLSKGWTLEEVGKRTGIARSTLSKIENDQVSP 63

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +   +  L + L+  L +L 
Sbjct: 64 SFTIVQKLINGLEMDLPQLF 83


>gi|148545072|ref|YP_001272442.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM
          20016]
 gi|227364226|ref|ZP_03848322.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|325683429|ref|ZP_08162945.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
 gi|148532106|gb|ABQ84105.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM
          20016]
 gi|227070771|gb|EEI09098.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
 gi|324977779|gb|EGC14730.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
          Length = 63

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN R  RK+ KL+Q E+    G A+  I+ +E  K    +   + LAH L T L  L 
Sbjct: 2  NNVRKYRKQQKLSQLELAKEIGVARQTINLIENDKYNPTLGLCLNLAHALHTDLNSLF 59


>gi|323141521|ref|ZP_08076407.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413980|gb|EFY04813.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 104

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 30/59 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +        + +R +  + Q E+    G +Q+ +S +E+G++ + ++N++ + +  +
Sbjct: 4  QVDYKAVGLRIKTLRLKNNIYQTELAKNIGVSQTHMSNIESGRAGLTLENLVKMTNIFN 62


>gi|313638392|gb|EFS03596.1| helix-turn-helix XRE-family like protein [Listeria seeligeri FSL
          S4-171]
          Length = 167

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75
          M   +  R +RK   +TQKE+    G+    A   I++ ETG  T  ID +  +A  L+ 
Sbjct: 1  MSVGSRIRRVRKFRDMTQKELGIALGYDEKSADVRITQYETGTRTPKIDVLNAMAEVLNV 60

Query: 76 PLWKLLKP 83
           +  L +P
Sbjct: 61 NVLSLKEP 68


>gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 108

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R +  ++Q E+  +     S IS+ E G +  +ID +  LA      +  L+
Sbjct: 3  FSVRLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDYLI 62


>gi|229096267|ref|ZP_04227240.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29]
 gi|228687227|gb|EEL41132.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29]
          Length = 405

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 5  LGAKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198]
 gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198]
          Length = 102

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +  RK+ KLT  E+  R G +Q   S LE G   I +D +I +++ L      L
Sbjct: 7  IVGQRIKQKRKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGISPQSL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|253991747|ref|YP_003043103.1| hypothetical protein PAU_04275 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211638522|emb|CAR67143.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253783197|emb|CAQ86362.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 82

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  + +   R  R    +TQ+ +       QS+I+++E G+  ++I   + +AH L    
Sbjct: 8  EYQVVIKALREARIAKGVTQENLAQALDRPQSFIAKVENGERRLDIVEFVHIAHLLSLEP 67

Query: 78 WKLLK 82
            L+K
Sbjct: 68 SVLIK 72


>gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 190

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
          E  L+D    +R I     R +R E   +  E+   +G +++ +S LE    +   + + 
Sbjct: 2  ETTLTDDNAIDRRI-AQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAVSPTANVLG 60

Query: 68 ILAHTLDTPLWKLL 81
           L      P+ +L+
Sbjct: 61 KLCVAYGLPMSRLM 74


>gi|167758243|ref|ZP_02430370.1| hypothetical protein CLOSCI_00581 [Clostridium scindens ATCC
          35704]
 gi|167664140|gb|EDS08270.1| hypothetical protein CLOSCI_00581 [Clostridium scindens ATCC
          35704]
          Length = 134

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   F  N   +R +  L+Q EI  + G  QS  +  ETG   I +  ++ L+       
Sbjct: 12 EYERFGRNLAAMRNKLGLSQYEISEKLGMLQSTYAGYETGTRKIPLSVIVQLSKFFGVEA 71

Query: 78 WKLL 81
            L+
Sbjct: 72 DVLI 75


>gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM
          17216]
 gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM
          17216]
          Length = 224

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RK   LTQ+++  R G  ++ +S +ETGK+ ++  N  IL   L+     L
Sbjct: 1  MTGDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWL 60


>gi|187477472|ref|YP_785496.1| transcriptional regulator [Bordetella avium 197N]
 gi|115422058|emb|CAJ48581.1| putative transcriptional regulator [Bordetella avium 197N]
          Length = 188

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 32/71 (45%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +++ I    +      R  R+    +  E+ +R+G +++ IS++E  +++     +  L+
Sbjct: 1  MNNPIPDPSIAIATRLRIEREARGWSLGELADRSGVSKAMISKIERCEASPTATILGKLS 60

Query: 71 HTLDTPLWKLL 81
                L  LL
Sbjct: 61 GAFGLQLSMLL 71


>gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
 gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + +R    LTQKE+  ++G   + I   E G  + + + +  ++  LD  +  
Sbjct: 1  MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|268610412|ref|ZP_06144139.1| transcriptional regulator, XRE family protein [Ruminococcus
          flavefaciens FD-1]
          Length = 252

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R +  ++Q+++  +    +  +S  ETG++  N + + +L+   D  +  LL
Sbjct: 9  ELRNKKGMSQEQLAEKVFVTRQAVSRWETGETQPNTETLKLLSQLFDVSINTLL 62


>gi|269798774|ref|YP_003312674.1| XRE family transcriptional regulator [Veillonella parvula DSM
          2008]
 gi|282849601|ref|ZP_06258985.1| DNA-binding protein [Veillonella parvula ATCC 17745]
 gi|294792537|ref|ZP_06757684.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 6_1_27]
 gi|269095403|gb|ACZ25394.1| transcriptional regulator, XRE family [Veillonella parvula DSM
          2008]
 gi|282580538|gb|EFB85937.1| DNA-binding protein [Veillonella parvula ATCC 17745]
 gi|294456436|gb|EFG24799.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 6_1_27]
          Length = 91

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R++  +TQ ++ +++G AQS+IS+LE+G        +  + + L 
Sbjct: 27 RRQLGMTQYQLADKSGLAQSYISDLESGAVDPRWSTIYRVVYGLG 71


>gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
 gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 122

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +      +R++   TQ+E+    G  ++ +S  E  +   + + +  LA   D  +  L+
Sbjct: 3  YGERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLI 62


>gi|152964472|ref|YP_001360256.1| XRE family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151358989|gb|ABS01992.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
          SRS30216]
          Length = 194

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            D     R+      R  R+   LT   +   +G ++  + +LE G S  +   +  L 
Sbjct: 6  SDDTAFTARL--AQVLRAARQARGLTTAALAQASGVSRGSVVKLERGDSQPSAALLGRLC 63

Query: 71 HTLDTPLWKLL 81
            L   L +L 
Sbjct: 64 GPLGLTLSELF 74


>gi|118444284|ref|YP_879117.1| LacI/xre family transcriptional regulator [Clostridium novyi NT]
 gi|118134740|gb|ABK61784.1| Predicted transcriptional regulator, lacI/xre family [Clostridium
          novyi NT]
          Length = 221

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            +  R+ R +A +T+K++  + G A+ +I E+E+GK  IN   M  ++  L   L
Sbjct: 4  VGSKIRDARLKANMTEKQLAKKIGVAEKFIKEVESGKKVINESVMEKISKVLGKDL 59


>gi|86741461|ref|YP_481861.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86568323|gb|ABD12132.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 250

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 26/71 (36%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
              +   R +     R  R     T +++ +    +  ++SE+E G    + + +  + 
Sbjct: 5  DDAEMPLLRRLVGQALRRRRLAQGRTLRDVADAARVSTPYLSEIERGLKEASSEILAAVC 64

Query: 71 HTLDTPLWKLL 81
            L   L  LL
Sbjct: 65 RALHIRLSDLL 75


>gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 359

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +RKE KLTQ+E+    G +   +S+ E G S  +I  +  LA  L+T +  LL
Sbjct: 7  GETILKLRKERKLTQEELALMIGISAGAVSKWENGNSMPDISILAPLARALNTSIDTLL 65


>gi|322384025|ref|ZP_08057752.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321151372|gb|EFX44562.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 210

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
              I     IF +N   +RK   LTQ ++    G   S +S+ E  K       +  L+
Sbjct: 2  DDKKIQ---EIFASNINKLRKSKSLTQSDLAKILGVGVSTVSDWEKAKKYPRAGVIEKLS 58

Query: 71 HTLDTP 76
               P
Sbjct: 59 QHFGIP 64


>gi|317491327|ref|ZP_07949763.1| cupin domain-containing protein [Enterobacteriaceae bacterium
          9_2_54FAA]
 gi|316920874|gb|EFV42197.1| cupin domain-containing protein [Enterobacteriaceae bacterium
          9_2_54FAA]
          Length = 185

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSHIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|307265009|ref|ZP_07546570.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306919994|gb|EFN50207.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 74

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + IRK+A LTQ EI  + G A++  + +E G    + +    +   L      + 
Sbjct: 5  LKKIRKQAGLTQAEIAKKVGIARTSYTNIELGIKNPSFNVATKIKKVLGVNNDDIF 60


>gi|317051592|ref|YP_004112708.1| helix-turn-helix domain-containing protein [Desulfurispirillum
          indicum S5]
 gi|316946676|gb|ADU66152.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 147

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             + +R+   L Q +     G + + IS++E G     ID +I +A+T++
Sbjct: 6  RRMKELREGLNLNQVKFAKLLGTSNTIISDIERGSRNPTIDLLIKIANTVE 56


>gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314]
 gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314]
          Length = 138

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST------INIDNMIILAHTL 73
                 R IRK    +Q+E+      +++ IS LE  ++         +  +  L+  L
Sbjct: 21 HTLGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWAL 80

Query: 74 DTPLWKLL 81
          D P   LL
Sbjct: 81 DVPPAALL 88


>gi|255692407|ref|ZP_05416082.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides finegoldii DSM 17565]
 gi|260621875|gb|EEX44746.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides finegoldii DSM 17565]
          Length = 101

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            +++ KE K+T   +    G  Q  +S +  GKST +++ +  +A  L+  + +L  P
Sbjct: 4  RIKDVLKEKKVTVVSLAGMIGITQPNMSNIVNGKSTPSLETLEKIASALEVDITELFGP 62


>gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme
          DSM 15981]
 gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme
          DSM 15981]
          Length = 151

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + +R E  ++Q E+  R+G+ ++S I+++E G + +    +  +A  L   +  LL
Sbjct: 17 GNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGINDVPQSKIKAIAEALGVSVGTLL 76


>gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23]
 gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23]
 gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W]
          Length = 185

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +   +  + +RK   +TQ ++ +    ++  +S  ETG++  ++  +  LA      +  
Sbjct: 4  LSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVDD 63

Query: 80 LL 81
          L+
Sbjct: 64 LI 65


>gi|171316971|ref|ZP_02906178.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171097895|gb|EDT42715.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 218

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D  + ER+      R++R     T   +  R G ++S IS +E   ++     +  LA 
Sbjct: 9  DDTGINERI--ARRVRDLRTLRGYTLDALAARCGVSRSMISLIERASASPTAVVLDKLAA 66

Query: 72 TLDTPLWKLL 81
           L   L  L 
Sbjct: 67 GLGVSLAGLF 76


>gi|90592588|ref|YP_529848.1| putative transcriptional regulator [Lactobacillus phage KC5a]
 gi|89891917|gb|ABD78790.1| putative transcriptional regulator [Lactobacillus phage KC5a]
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R E  LT +E+  + G   S +S+ ET K    +D    LA   + P+  LL
Sbjct: 3  NRLKELRHEKNLTLRELGEKVGMRNSTLSQYETNKREPKLDTWQKLADFFNVPVDYLL 60


>gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS6180]
 gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes
          MGAS10270]
 gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS6180]
 gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          MGAS10270]
          Length = 128

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + IL+   +     + +R EA LTQKE+      +Q  I+  E G       ++  LA+ 
Sbjct: 9  NIILKGTTMLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANV 68

Query: 73 LDTPLWKLL 81
           +     LL
Sbjct: 69 FNVSTDYLL 77


>gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC
          13129]
 gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae]
          Length = 474

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +RKE  LTQ  +    G + S+I+++E     +    +  +  +   
Sbjct: 6  VGSRLRQLRKERDLTQAALAELLGISASYINQIEHDVRPLTPQVLRKITASFGV 59


>gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311]
 gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311]
          Length = 239

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+   LTQ+++ +     +  IS  ETG+   N D +  L+   +  +  
Sbjct: 6  KFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYEISIND 65

Query: 80 LL 81
            
Sbjct: 66 FF 67


>gi|326330980|ref|ZP_08197279.1| toxin-antitoxin system, antitoxin component, Xre family
          [Nocardioidaceae bacterium Broad-1]
 gi|325951191|gb|EGD43232.1| toxin-antitoxin system, antitoxin component, Xre family
          [Nocardioidaceae bacterium Broad-1]
          Length = 268

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  R  R+   L+Q  +  +   +   +S +E G++    + ++ LA  L  P+ +
Sbjct: 18 VGSELRRWRELRSLSQLALATQAEVSTRHVSYVENGRARPTPEMIVRLAEVLRVPMAE 75


>gi|309808081|ref|ZP_07701999.1| replication initiation factor [Lactobacillus iners LactinV
          01V1-a]
 gi|308168683|gb|EFO70783.1| replication initiation factor [Lactobacillus iners LactinV
          01V1-a]
          Length = 401

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|325680567|ref|ZP_08160110.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324107704|gb|EGC01977.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 102

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R++ K++   +   TG +   I  +E G     I+ +  LA  L + L ++ 
Sbjct: 3  VGKKLHKLREDKKMSMYRLTQLTGVSGHHIKGIEEGTRQPTIETLNRLAVALGSSLAEMF 62


>gi|283470181|emb|CAQ49392.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus ST398]
          Length = 401

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725]
 gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
 gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725]
 gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
          Length = 469

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +R+E  L+Q  +    G + S+++++E     + +  ++ +      
Sbjct: 3  KTYVGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDVRPLTVPVLLRITEVFGV 59


>gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N  R+ RK    TQ+ + ++ G + S++  LE G  T     +  +A TL     +L
Sbjct: 6  LGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGTRTPTEPVLRKIASTLQVDYDEL 64


>gi|169334606|ref|ZP_02861799.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259323|gb|EDS73289.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 102

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IRK+   +Q+E   +    +  IS  ETG+++ +I+  I +A      L +L
Sbjct: 2  IRKKEGYSQEEAAEKLNVTRQTISNWETGQTSPSIEQSISIAKLYKISLDEL 53


>gi|22537094|ref|NP_687945.1| Tn916, transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|69247638|ref|ZP_00604432.1| Helix-turn-helix motif:Replication initiation factor
          [Enterococcus faecium DO]
 gi|69249686|ref|ZP_00605030.1| Helix-turn-helix motif:Replication initiation factor
          [Enterococcus faecium DO]
 gi|77411088|ref|ZP_00787441.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae CJB111]
 gi|146318584|ref|YP_001198296.1| Tn916, transcriptional regulator, [Streptococcus suis 05ZYH33]
 gi|146320783|ref|YP_001200494.1| Tn916, transcriptional regulator [Streptococcus suis 98HAH33]
 gi|182683132|ref|YP_001834879.1| Tn916, transcriptional regulator, putative [Streptococcus
          pneumoniae CGSP14]
 gi|210616542|ref|ZP_03291124.1| hypothetical protein CLONEX_03345 [Clostridium nexile DSM 1787]
 gi|221232076|ref|YP_002511229.1| conjugative transposon replication initiation factor
          [Streptococcus pneumoniae ATCC 700669]
 gi|225856798|ref|YP_002738309.1| transcriptional regulator, Cro/CI family [Streptococcus
          pneumoniae P1031]
 gi|225861751|ref|YP_002743260.1| transcriptional regulator, Cro/CI family [Streptococcus
          pneumoniae Taiwan19F-14]
 gi|227484753|ref|ZP_03915069.1| replication initiation protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227554323|ref|ZP_03984370.1| replication initiation protein [Enterococcus faecalis HH22]
 gi|228477742|ref|ZP_04062371.1| transcriptional regulator, Cro/CI family [Streptococcus
          salivarius SK126]
 gi|229546625|ref|ZP_04435350.1| replication initiation protein [Enterococcus faecalis TX1322]
 gi|253751708|ref|YP_003024849.1| replication initiation factor [Streptococcus suis SC84]
 gi|253755114|ref|YP_003028254.1| replication initiation factor [Streptococcus suis BM407]
 gi|253755578|ref|YP_003028718.1| replication initiation factor [Streptococcus suis BM407]
 gi|255974486|ref|ZP_05425072.1| transcriptional regulator [Enterococcus faecalis T2]
 gi|256763495|ref|ZP_05504075.1| transcriptional regulator [Enterococcus faecalis T3]
 gi|257077695|ref|ZP_05572056.1| transcriptional regulator [Enterococcus faecalis JH1]
 gi|257086311|ref|ZP_05580672.1| transcriptional regulator [Enterococcus faecalis D6]
 gi|257090946|ref|ZP_05585307.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257417714|ref|ZP_05594708.1| transcriptional regulator [Enterococcus faecalis AR01/DG]
 gi|257868782|ref|ZP_05648435.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|258616908|ref|ZP_05714678.1| Tn5251 transcriptional regulator Cro/CI family protein
          [Enterococcus faecium DO]
 gi|260562507|ref|ZP_05833016.1| transcriptional regulator [Enterococcus faecium C68]
 gi|270293240|ref|ZP_06199451.1| putative , transcriptional regulator [Streptococcus sp. M143]
 gi|288905889|ref|YP_003431111.1| transcriptional regulator, Cro/CI family (Tn916) [Streptococcus
          gallolyticus UCN34]
 gi|289422761|ref|ZP_06424600.1| transcriptional regulator, Cro/CI family [Peptostreptococcus
          anaerobius 653-L]
 gi|289450523|ref|YP_003475491.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|293563931|ref|ZP_06678350.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1162]
 gi|296451796|ref|ZP_06893518.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296881126|ref|ZP_06905062.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|297587359|ref|ZP_06946004.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC
          53516]
 gi|300814603|ref|ZP_07094854.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300861585|ref|ZP_07107669.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|302379650|ref|ZP_07268135.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|306832053|ref|ZP_07465207.1| cro/CI family transcriptional regulator [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|306834396|ref|ZP_07467513.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|307269829|ref|ZP_07551159.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307272346|ref|ZP_07553603.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307275123|ref|ZP_07556277.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307284023|ref|ZP_07564193.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|307289432|ref|ZP_07569385.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|309803154|ref|ZP_07697251.1| replication initiation factor [Lactobacillus iners LactinV
          11V1-d]
 gi|309806369|ref|ZP_07700382.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          03V1-b]
 gi|309809994|ref|ZP_07703842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
          2503V10-D]
 gi|312873865|ref|ZP_07733908.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
 gi|312952193|ref|ZP_07771071.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|313884186|ref|ZP_07817952.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|313890998|ref|ZP_07824619.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313891726|ref|ZP_07825331.1| DNA-binding helix-turn-helix protein [Dialister microaerophilus
          UPII 345-E]
 gi|314948663|ref|ZP_07852037.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|317495450|ref|ZP_07953819.1| replication initiation factor [Gemella moribillum M424]
 gi|319893409|ref|YP_004150284.1| Tn916-associated transcriptional regulator [Staphylococcus
          pseudintermedius HKU10-03]
 gi|322376612|ref|ZP_08051105.1| putative , transcriptional regulator [Streptococcus sp. M334]
 gi|322385335|ref|ZP_08058980.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|322392758|ref|ZP_08066217.1| cro/CI family transcriptional regulator [Streptococcus peroris
          ATCC 700780]
 gi|325846333|ref|ZP_08169323.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325911706|ref|ZP_08174113.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
 gi|329122035|ref|ZP_08250644.1| cro/CI family transcriptional regulator [Dialister micraerophilus
          DSM 19965]
 gi|331267226|ref|YP_004326856.1| Tn916, transcriptional regulator, putative [Streptococcus oralis
          Uo5]
 gi|22533954|gb|AAM99817.1|AE014234_7 Tn916, transcriptional regulator, putative [Streptococcus
          agalactiae 2603V/R]
 gi|68194098|gb|EAN08639.1| Helix-turn-helix motif:Replication initiation factor
          [Enterococcus faecium DO]
 gi|68194756|gb|EAN09235.1| Helix-turn-helix motif:Replication initiation factor
          [Enterococcus faecium DO]
 gi|77162811|gb|EAO73769.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae CJB111]
 gi|145689390|gb|ABP89896.1| Tn916, transcriptional regulator, putative [Streptococcus suis
          05ZYH33]
 gi|145691589|gb|ABP92094.1| Tn916, transcriptional regulator, putative [Streptococcus suis
          98HAH33]
 gi|182628466|gb|ACB89414.1| Tn916, transcriptional regulator, putative [Streptococcus
          pneumoniae CGSP14]
 gi|183217323|gb|ACC59242.1| relaxase [Streptococcus pneumoniae]
 gi|210149753|gb|EEA80762.1| hypothetical protein CLONEX_03345 [Clostridium nexile DSM 1787]
 gi|220674537|emb|CAR69099.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae ATCC 700669]
 gi|225725890|gb|ACO21742.1| transcriptional regulator, Cro/CI family [Streptococcus
          pneumoniae P1031]
 gi|225726728|gb|ACO22579.1| transcriptional regulator, Cro/CI family [Streptococcus
          pneumoniae Taiwan19F-14]
 gi|227176533|gb|EEI57505.1| replication initiation protein [Enterococcus faecalis HH22]
 gi|227237275|gb|EEI87290.1| replication initiation protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|228250631|gb|EEK09842.1| transcriptional regulator, Cro/CI family [Streptococcus
          salivarius SK126]
 gi|229308257|gb|EEN74244.1| replication initiation protein [Enterococcus faecalis TX1322]
 gi|251815997|emb|CAZ51614.1| replication initiation factor [Streptococcus suis SC84]
 gi|251817578|emb|CAZ55325.1| replication initiation factor [Streptococcus suis BM407]
 gi|251818042|emb|CAZ55832.1| replication initiation factor [Streptococcus suis BM407]
 gi|255967358|gb|EET97980.1| transcriptional regulator [Enterococcus faecalis T2]
 gi|256684746|gb|EEU24441.1| transcriptional regulator [Enterococcus faecalis T3]
 gi|256985725|gb|EEU73027.1| transcriptional regulator [Enterococcus faecalis JH1]
 gi|256994341|gb|EEU81643.1| transcriptional regulator [Enterococcus faecalis D6]
 gi|256999758|gb|EEU86278.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257159542|gb|EEU89502.1| transcriptional regulator [Enterococcus faecalis ARO1/DG]
 gi|257802946|gb|EEV31768.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|259906627|gb|ACW84401.1| relaxase [Streptococcus pneumoniae]
 gi|260073107|gb|EEW61453.1| transcriptional regulator [Enterococcus faecium C68]
 gi|270279219|gb|EFA25065.1| putative , transcriptional regulator [Streptococcus sp. M143]
 gi|288732615|emb|CBI14187.1| putative transcriptional regulator, Cro/CI family (Tn916)
          [Streptococcus gallolyticus UCN34]
 gi|289156816|gb|EFD05442.1| transcriptional regulator, Cro/CI family [Peptostreptococcus
          anaerobius 653-L]
 gi|289185070|gb|ADC91495.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|291604115|gb|EFF33630.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1162]
 gi|296259354|gb|EFH06227.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296427876|gb|EFH13787.1| cro/CI family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|297575340|gb|EFH94059.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC
          53516]
 gi|300511222|gb|EFK38471.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300849046|gb|EFK76799.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|302312557|gb|EFK94553.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3]
 gi|304423569|gb|EFM26718.1| cro/CI family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304425492|gb|EFM28610.1| cro/CI family transcriptional regulator [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|306499609|gb|EFM68973.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306503394|gb|EFM72643.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306508241|gb|EFM77357.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306510985|gb|EFM79998.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|306513939|gb|EFM82541.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|308164662|gb|EFO66912.1| replication initiation factor [Lactobacillus iners LactinV
          11V1-d]
 gi|308167353|gb|EFO69519.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          03V1-b]
 gi|308169782|gb|EFO71827.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN
          2503V10-D]
 gi|310629849|gb|EFQ13132.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|311090647|gb|EFQ49048.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
 gi|312620633|gb|EFR32056.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|313119720|gb|EFR42907.1| DNA-binding helix-turn-helix protein [Dialister microaerophilus
          UPII 345-E]
 gi|313120622|gb|EFR43740.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313644916|gb|EFS09496.1| helix-turn-helix protein [Enterococcus faecium TX0082]
 gi|315027162|gb|EFT39094.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315032840|gb|EFT44772.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315146391|gb|EFT90407.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
 gi|315154516|gb|EFT98532.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
 gi|315154991|gb|EFT99007.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
 gi|315158711|gb|EFU02728.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315163463|gb|EFU07480.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315165389|gb|EFU09406.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
 gi|315174511|gb|EFU18528.1| helix-turn-helix protein [Enterococcus faecalis TX1346]
 gi|315575435|gb|EFU87626.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315582870|gb|EFU95061.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
 gi|316914509|gb|EFV35986.1| replication initiation factor [Gemella moribillum M424]
 gi|317163105|gb|ADV06648.1| Tn916-associated transcriptional regulator [Staphylococcus
          pseudintermedius HKU10-03]
 gi|321144396|gb|EFX39798.1| cro/CI family transcriptional regulator [Streptococcus peroris
          ATCC 700780]
 gi|321157340|emb|CBW39321.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
 gi|321157430|emb|CBW39408.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
 gi|321270594|gb|EFX53509.1| cro/CI family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|321282419|gb|EFX59426.1| putative , transcriptional regulator [Streptococcus sp. M334]
 gi|325476472|gb|EGC79631.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
 gi|325481597|gb|EGC84636.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325688802|gb|EGD30810.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK115]
 gi|326683898|emb|CBZ01516.1| Tn916, transcriptional regulator, putative [Streptococcus oralis
          Uo5]
 gi|327467087|gb|EGF12599.1| cro/CI family transcriptional regulator [Dialister micraerophilus
          DSM 19965]
 gi|327474116|gb|EGF19526.1| cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK408]
 gi|329577624|gb|EGG59056.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 401

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium
          ljungdahlii DSM 13528]
 gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif
          [Clostridium ljungdahlii DSM 13528]
          Length = 344

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++++  F       RKE  LTQKE+  +   ++S +S+ E G S  +I  ++ +   L  
Sbjct: 1  MKDKAAFGKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGISYPDISLILSICDALKI 60

Query: 76 PLWKLLK 82
             +L+ 
Sbjct: 61 SEHELIT 67


>gi|288560583|ref|YP_003424069.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288543293|gb|ADC47177.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 189

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   F    ++IR+  +++ +E+  ++G     +  +E G+   ++  +  +A  L   L
Sbjct: 3  ENKKFAQKVKDIRERQQMSIEELAEKSGVKLEVLQAMENGEIIPSLTPLTKMAKALGVRL 62


>gi|284929123|ref|YP_003421645.1| hypothetical protein UCYN_05600 [cyanobacterium UCYN-A]
 gi|284809582|gb|ADB95287.1| 4Fe-4S protein,Helix-turn-helix protein [cyanobacterium UCYN-A]
          Length = 532

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 36/72 (50%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R+K+ +    + + +   +     +  RK+  L+Q+ +  + G +QSWI +LE G+ +  
Sbjct: 460 RKKQQKNSQKNRVKKSSQLSAEKIQYARKKKGLSQRALAKQVGKSQSWIRDLEKGRCSAK 519

Query: 63  IDNMIILAHTLD 74
            ++   L   L+
Sbjct: 520 AEDRENLQSILE 531


>gi|255324440|ref|ZP_05365557.1| transcriptional regulator, XRE family [Corynebacterium
          tuberculostearicum SK141]
 gi|255298346|gb|EET77646.1| transcriptional regulator, XRE family [Corynebacterium
          tuberculostearicum SK141]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+  +L+Q E+ ++ G ++  I+ +E G  + ++   + + H L   + ++ 
Sbjct: 8  VRKWRRWLELSQAELADKAGVSRQTIANIERGNYSPSVHLALDICHELGKTVEEIF 63


>gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 188

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R+E   +       TG +++ + ++E G+S+  +  +  +A  L+      ++
Sbjct: 10 GDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGLNVAFSTFIE 69

Query: 83 P 83
          P
Sbjct: 70 P 70


>gi|257063582|ref|YP_003143254.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
 gi|256791235|gb|ACV21905.1| predicted transcriptional regulator [Slackia heliotrinireducens
          DSM 20476]
          Length = 76

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  +R +       +R+E  ++Q+ +       +  ++ +E+G +   I  ++ +A  LD
Sbjct: 9  IESKRKL-GVRIAKLREEKGMSQRRLALVLELDRVTLNRIESGTANPTISTLMRIADGLD 67

Query: 75 TPLWKLL 81
              +L 
Sbjct: 68 VAFEELF 74


>gi|152965402|ref|YP_001361186.1| XRE family transcriptional regulator [Kineococcus radiotolerans
           SRS30216]
 gi|151359919|gb|ABS02922.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
           SRS30216]
          Length = 232

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R  R   + T  E+   +G  + ++S LE  ++T ++  ++ L  TLD  +  L +
Sbjct: 44  GSRLRAARLAQRRTVAEVAEASGLTKGFLSRLERDRATASVAALVRLCATLDLAVGSLFE 103

Query: 83  P 83
           P
Sbjct: 104 P 104


>gi|161598530|ref|YP_001573911.1| hypothetical protein pEDINA_p39 [Staphylococcus aureus]
 gi|27531763|dbj|BAC54531.1| unnamed protein product [Staphylococcus aureus]
 gi|282166102|gb|ADA80122.1| hypothetical protein SAP099B_021 [Staphylococcus aureus]
          Length = 64

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEDIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|91790200|ref|YP_551152.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91699425|gb|ABE46254.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 197

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R+  +L+  ++  R G ++S +S++E  ++   +  +  LA  L   +   L
Sbjct: 16 VGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDFL 75


>gi|71065694|ref|YP_264421.1| DNA-binding protein [Psychrobacter arcticus 273-4]
 gi|71038679|gb|AAZ18987.1| probable DNA binding protein, helix turn helix motif
          [Psychrobacter arcticus 273-4]
          Length = 101

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +  R    LTQ  +  + G   S ++ +E+G+    +DN+I LA  L    
Sbjct: 15 KILGERLKTQRLALNLTQAALAEKAGIGVSTVARIESGQ-GGTLDNIIRLAMALGMVH 71


>gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM
          2581]
 gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM
          2581]
          Length = 200

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+E +L+Q+E+  R     S IS +E    + ++ ++  +   L   +
Sbjct: 7  VGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSVSPSVSSLKKILDALPVSI 62


>gi|297342817|gb|ADI33756.1| control protein [Shigella boydii]
          Length = 75

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK   +TQK +    G  QS+IS+ ETG+  I+   +I + + L  P + L+
Sbjct: 18 RKRIGVTQKMLSEALGKPQSYISKYETGERRIDAIELIDICNELGVPFYNLI 69


>gi|271969009|ref|YP_003343205.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270512184|gb|ACZ90462.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 271

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R+  +++Q ++  +T  +   +S +ETG+S  + D ++ LA  LD PL +
Sbjct: 14 VGELLRQWRERRRMSQMDLAIQTDISTRHLSFVETGRSKPSRDMILRLAEELDLPLRE 71


>gi|254563686|ref|YP_003070781.1| transcriptional regulator [Methylobacterium extorquens DM4]
 gi|254270964|emb|CAX26969.1| putative transcriptional regulator [Methylobacterium extorquens
          DM4]
          Length = 71

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             L+Q+ +    G  ++++  LE       +D +  +A  L  PL +L 
Sbjct: 2  AQNLSQERLAADAGVDRAYLGGLERQAENPTVDLLDKVAEALAVPLGELF 51


>gi|218896717|ref|YP_002445128.1| DNA-binding protein [Bacillus cereus G9842]
 gi|218542568|gb|ACK94962.1| DNA-binding protein [Bacillus cereus G9842]
          Length = 404

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++   +   +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGAKIKTLRKEKKLTQTDLAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|163840394|ref|YP_001624799.1| trancriptional regulator, PopR-like protein [Renibacterium
          salmoninarum ATCC 33209]
 gi|162953870|gb|ABY23385.1| trancriptional regulator, PopR-like protein [Renibacterium
          salmoninarum ATCC 33209]
          Length = 123

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R+    T  E+    G +  ++SE+E G+   + + +  +   L   L 
Sbjct: 7  RSVHGKILRRARQRQGKTLGEVAQTAGISMQYLSEIERGRKEPSSEILAAVCRALGWSLL 66

Query: 79 KL 80
           L
Sbjct: 67 NL 68


>gi|126665063|ref|ZP_01736046.1| hypothetical protein MELB17_18384 [Marinobacter sp. ELB17]
 gi|126630433|gb|EBA01048.1| hypothetical protein MELB17_18384 [Marinobacter sp. ELB17]
          Length = 96

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N    +R  A LTQ+++  R G A+  IS LE GK   +   +   A+   
Sbjct: 31 NQLITMRTSAGLTQEQLAKRIGTAKGNISRLERGKGNPSWATLEKYANACG 81


>gi|88607013|ref|YP_505749.1| DNA-binding protein [Anaplasma phagocytophilum HZ]
 gi|35057062|gb|AAN15209.1| putative transcriptional regulator [Anaplasma phagocytophilum]
 gi|88598076|gb|ABD43546.1| DNA-binding protein [Anaplasma phagocytophilum HZ]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +     +        +  R    ++Q ++ +R G     + + E G + I I  +  LA 
Sbjct: 21 AKPHPVD-EYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELAR 79

Query: 72 TLDTPLWKLL 81
           L   +  L+
Sbjct: 80 VLGIEINDLM 89


>gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter
          fumaroxidans MPOB]
 gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter
          fumaroxidans MPOB]
          Length = 204

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  R +R++  LT +++  +TG ++ ++S++E  K    +  +  LA  L   L    +
Sbjct: 19 GNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALGHFFQ 78


>gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
 gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  N     R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  + P+  
Sbjct: 3  LLLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITD 62

Query: 80 LL 81
          + 
Sbjct: 63 VF 64


>gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323]
 gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03]
 gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03]
          Length = 70

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK+  L+Q  +  R   A+  I+ +E  K   ++D  + LAH LDT L  L 
Sbjct: 8  NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLF 65


>gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 328

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +   ++RK+A  +Q+E+  +   ++  IS+ E  ++  +++ ++ LA         
Sbjct: 1  MILADKILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAIPDLEKILDLARIFGVTTDY 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC
          700338]
          Length = 157

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE KLTQKE+ ++   ++  +   E G+  I  D    LA      +  LL
Sbjct: 2  NRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKPDKAQQLADFFGVSVGYLL 59


>gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum
          indicum S5]
 gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 224

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +RK   LTQ E     G +  ++SE E GK     + +  +   L+  +  L
Sbjct: 1  MLNQRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQGKKVPGGEILRRICEKLNANINWL 60

Query: 81 LK 82
          L 
Sbjct: 61 LT 62


>gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
 gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
          D14]
          Length = 76

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK   LTQ E+    G  +  I+ +E  +    ++    LA  L T + +L 
Sbjct: 16 NKIKQFRKRLGLTQNELAAECGVTRQTINCVENNRYDPTLELAFKLAKILQTKVDELF 73


>gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family
          [Rhizobium etli Kim 5]
          Length = 189

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|196251156|ref|ZP_03149833.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|196209320|gb|EDY04102.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 136

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
          F +  R  R++   + +++  +TG +  +++ LE G +   +I     +A  L  PL  L
Sbjct: 12 FGSTLRYWREKRGYSLQQLYEKTGVSAGYLNRLEKGERRAPSIPIASKIAEALGIPLSLL 71

Query: 81 L 81
          L
Sbjct: 72 L 72


>gi|83950958|ref|ZP_00959691.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM]
 gi|83838857|gb|EAP78153.1| hypothetical protein ISM_07650 [Roseovarius nubinhibens ISM]
          Length = 199

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R+   L+Q+E+  R+G  QS IS++E+    + + ++  LAH LD  L
Sbjct: 12 LREARENKGLSQRELSKRSGVPQSHISKIESNNVDLRLSSLASLAHALDLEL 63


>gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 117

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 36/61 (59%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RKE K+TQ+++    G +QS I  +E  +   + D +I LA+TL+T +  L
Sbjct: 1  MLGDKVKLLRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|325919786|ref|ZP_08181781.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865]
 gi|325549742|gb|EGD20601.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865]
          Length = 113

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTL 73
           R+IF N  R+ R++A+LTQ+ +    G     A++ I+  E G +  ++     LA  L
Sbjct: 6  ARLIFANRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADAL 65

Query: 74 DTPL 77
            PL
Sbjct: 66 GMPL 69


>gi|311899729|dbj|BAJ32137.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 282

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   D       +F +  R IR EA L+Q  +    G+  S + ++ET K +   +    
Sbjct: 4  PRDLDPAASMAALFGSELRRIRAEANLSQDALGEVLGYTGSLVGQIETAKRSPTQEFAER 63

Query: 69 LAHTLDT 75
          L   L T
Sbjct: 64 LDGALAT 70


>gi|291530057|emb|CBK95642.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 79

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  R    N    IRKE  + Q+E+      ++  I  LE G+   +I     LA   +
Sbjct: 6  SIERRRTVKNRLEEIRKERGIKQEELAAALEVSRQTIGSLENGRYNPSIILAFKLARYFN 65

Query: 75 TPLWKLL 81
            +  + 
Sbjct: 66 MSIEDIF 72


>gi|271964091|ref|YP_003338287.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM
          43021]
 gi|270507266|gb|ACZ85544.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM
          43021]
          Length = 430

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R++  L+Q ++ +    + S++S +E+GK T     + +LA  LD  L  L
Sbjct: 6  LVGQRIKTVRRQRGLSQAQLAH-PELSDSYVSLIESGKRTPTPSVLELLAEKLDCSLTYL 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|270262060|ref|ZP_06190332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043936|gb|EFA17028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 200

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I        +  +  RK+ KLT  E+  + G ++  + E+E G +  +I  +  +A  L 
Sbjct: 15 IQTVNEAVSSTIKQHRKDKKLTLDELSRKAGVSKGMLVEIEKGTANPSIAILCKIAAALG 74

Query: 75 TPLWKLL 81
            +  ++
Sbjct: 75 LSVADIV 81


>gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM
          16069]
 gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM
          16069]
          Length = 175

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 24/50 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R +R +   +Q+++   TG +   I  +E G++  +++    LA   + 
Sbjct: 3  VRKLRLKRGWSQEQLAELTGVSTRTIQRIERGQTKPSLETQKSLAAVFEV 52


>gi|206564567|ref|YP_002235330.1| MerR family regulatory protein [Burkholderia cenocepacia J2315]
 gi|198040607|emb|CAR56593.1| MerR family regulatory protein [Burkholderia cenocepacia J2315]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ ++ ++  +AH L  
Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 69


>gi|187777459|ref|ZP_02993932.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC
          15579]
 gi|187774387|gb|EDU38189.1| hypothetical protein CLOSPO_01026 [Clostridium sporogenes ATCC
          15579]
          Length = 220

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +  LTQK++  + G A+S+I+E+E+G+  IN   M  ++  L  
Sbjct: 7  KIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGK 57


>gi|169335627|ref|ZP_02862820.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258365|gb|EDS72331.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 229

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   N    +R+E   +Q+ +  + G ++  +S+ E  +   +ID ++ L+     P   
Sbjct: 1  MTIGNKIMTLRRENNFSQEILAEKLGVSRQAVSKWEAEQCLPDIDKIVKLSELFSVPTDY 60

Query: 80 LLK 82
          +LK
Sbjct: 61 ILK 63


>gi|167757904|ref|ZP_02430031.1| hypothetical protein CLOSCI_00235 [Clostridium scindens ATCC
          35704]
 gi|167664558|gb|EDS08688.1| hypothetical protein CLOSCI_00235 [Clostridium scindens ATCC
          35704]
          Length = 114

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N R + KLTQ E+      +  ++ +LE  ++  + D    +    +     ++
Sbjct: 8  FGIMLKNARMDKKLTQAELAEILDISLPYLKDLERFRNNPSYDVFEKVIRYFNLSADTVI 67

Query: 82 KP 83
           P
Sbjct: 68 YP 69


>gi|167032796|ref|YP_001668027.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859284|gb|ABY97691.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK   LT  E+  R G +  ++S++E G S   + ++  ++  L       +KL K
Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|20092778|ref|NP_618853.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A]
 gi|19918074|gb|AAM07333.1| helix-turn-helix family protein [Methanosarcina acetivorans C2A]
          Length = 67

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R    LTQ+ +  + G  +  I+ +E GK   ++D    L+      +  + 
Sbjct: 3  NNIKVYRAIHDLTQENLAEKVGVTRQTINAIEKGKYDPSLDLAFKLSRLFKASVEDIF 60


>gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM
          519]
 gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii]
          Length = 328

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK++  +Q+E+  +   ++  IS+ E  +S   +D ++ L+         
Sbjct: 1  MILADKIILLRKKSGWSQEELAEKLNVSRQSISKWEGAQSVPGMDKILQLSEIFGVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
 gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1]
          Length = 231

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
           +  R +R    +   E+    G   + IS LETGK    +   +  LA  L   +  L 
Sbjct: 4  GSRIRQLRLAKNIKIAELAEAVGVDAANISRLETGKQKQFSEQTLNRLAQALSVSVPDLF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|296168076|ref|ZP_06850142.1| PbsX family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
 gi|295896883|gb|EFG76511.1| PbsX family transcriptional regulator [Mycobacterium
          parascrofulaceum ATCC BAA-614]
          Length = 142

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 29/55 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R+ R+ A+++ +++  ++G +  ++S++E G    + + +  +A  L      L
Sbjct: 26 IRSQRELAQVSVRQLAEKSGVSNPYLSQVERGLRKPSAEVLNQIAKALRVSAEVL 80


>gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN]
 gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN]
          Length = 273

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          N    +RKE  LT +++ +      + IS  ETGK    ++  + LA+  D P
Sbjct: 9  NRIAELRKEKGLTLQQVADAVSVGNNTISRYETGKREPKLETWMKLANVFDVP 61


>gi|302530263|ref|ZP_07282605.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302439158|gb|EFL10974.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 258

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F +  R+ R   +L+Q ++  + G  Q  +S +E G+S      ++ +A  L  PL +
Sbjct: 5  FADALRDARSRRRLSQLDLALKAGTTQRHVSFMERGRSLPGRGMVVRVAEALGLPLRE 62


>gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
 gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum
          subsp. plantarum ATCC 14917]
          Length = 68

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + IR +   TQ ++ +  G +QS ++ LE      +   + +LA  +   +  L
Sbjct: 1  MIGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTKHPDAVTLNLLAKAMGVTVDDL 60

Query: 81 LKP 83
          L+P
Sbjct: 61 LEP 63


>gi|154687495|ref|YP_001422656.1| YvaN [Bacillus amyloliquefaciens FZB42]
 gi|126363005|emb|CAM35821.1| repressor protein RghR [Bacillus amyloliquefaciens FZB42]
 gi|154353346|gb|ABS75425.1| YvaN [Bacillus amyloliquefaciens FZB42]
          Length = 136

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
            F    R +R++  LT  ++   +G + + IS +E GK        +  LA  L  P  
Sbjct: 2  ESFGKQLRTLREKRHLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLADALKIPYE 61

Query: 79 KLLK 82
          +L++
Sbjct: 62 ELMQ 65


>gi|172060084|ref|YP_001807736.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171992601|gb|ACB63520.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 219

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP   R  P + +  + ER+      R++R     T   +  R+G ++S IS +E   ++
Sbjct: 1  MPEFTR--PPVDETGINERI--ARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASAS 56

Query: 61 INIDNMIILAHTLDTPLWKLL 81
               +  LA  L   L  L 
Sbjct: 57 PTAVVLDKLAAGLGVSLAGLF 77


>gi|110597669|ref|ZP_01385954.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031]
 gi|110340789|gb|EAT59266.1| Helix-turn-helix motif [Chlorobium ferrooxidans DSM 13031]
          Length = 109

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80
           FV      R+ + LTQ+ I ++ G  +S IS LE+ GK   +I  +   A  L   L   
Sbjct: 39  FVRELLLARQRSGLTQEAIASKIGTTKSAISRLESGGKHIPSITTLRKYAEALGCELEIK 98

Query: 81  LKP 83
           L P
Sbjct: 99  LVP 101


>gi|319935803|ref|ZP_08010232.1| hypothetical protein HMPREF9488_01063 [Coprobacillus sp. 29_1]
 gi|319809238|gb|EFW05687.1| hypothetical protein HMPREF9488_01063 [Coprobacillus sp. 29_1]
          Length = 121

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQ  +      + S +S +ET K+  ++  +  ++  L   L +L+
Sbjct: 16 GRKIQKLRNMQSLTQAYVAGLADISLSHMSNIETAKTKPSLVTLSRISRILGCTLDELV 74


>gi|309805668|ref|ZP_07699709.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
 gi|308165028|gb|EFO67270.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          09V1-c]
          Length = 416

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|300781541|ref|ZP_07091395.1| XRE family transcriptional regulator [Corynebacterium genitalium
          ATCC 33030]
 gi|300533248|gb|EFK54309.1| XRE family transcriptional regulator [Corynebacterium genitalium
          ATCC 33030]
          Length = 107

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R E      ++  R G +  ++SE+E G    + + +  ++  LD    
Sbjct: 25 REAVGETIREARTERGDRLTDVAERAGVSTQYLSEIERGLKDPSSEVLHAVSGALDLTTR 84

Query: 79 KLLK 82
          ++ +
Sbjct: 85 EVTR 88


>gi|197105847|ref|YP_002131224.1| hypothetical protein PHZ_c2386 [Phenylobacterium zucineum HLK1]
 gi|196479267|gb|ACG78795.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 210

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
            R+ RK    +Q+++  R G  Q+ IS +E+G     +  +  LA  LD  L 
Sbjct: 31 QLRDARKAKLWSQRDLSERAGIPQAHISRIESGAIDPKVSTLQDLARVLDLDLV 84


>gi|172061981|ref|YP_001809633.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171994498|gb|ACB65417.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 271

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+EAK T  E+      +  ++S++E   + I++ +++ +A  L+ PL  L++
Sbjct: 4  GQRIRRLRREAKKTLLEVAAEANLSIGFLSQVERNLTGISLSSLVNVATALNVPLGTLIE 63


>gi|118443353|ref|YP_878274.1| transcriptional regulator [Clostridium novyi NT]
 gi|118133809|gb|ABK60853.1| putative transcriptional regulator [Clostridium novyi NT]
          Length = 113

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +R    +T  E+   TG  QS IS++E GK  I  +++  LA  L+  + +  
Sbjct: 5  EKLKQLRISRNITTYELSELTGIPQSTISKMENGKRKIEAESLQKLADALNISVNEFF 62


>gi|15679328|ref|NP_276445.1| hypothetical protein MTH1328 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|3219928|sp|O27383|Y1328_METTH RecName: Full=Uncharacterized HTH-type transcriptional regulator
          MTH_1328
 gi|2622434|gb|AAB85806.1| conserved protein [Methanothermobacter thermautotrophicus str.
          Delta H]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  RKE  LTQ+E+  R G  +  I  LE G+ + ++     +A  L     +
Sbjct: 5  IREHRKELGLTQEELAERVGVTRQTIIALEKGRYSPSLILAHRIARALGREHIE 58


>gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071]
 gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RKE  +T   +   TG + S +S LE+G     ++ ++ LA      L +L+
Sbjct: 2  GERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 60


>gi|331699134|ref|YP_004335373.1| helix-turn-helix domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326953823|gb|AEA27520.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
          CB1190]
          Length = 175

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+ R+   +   E+   +G ++ ++S+LE G +  ++ ++  LA+ L+T    L+
Sbjct: 2  GAAIRSRRRSIGINITELAALSGLSRPFVSQLERGLARPSMRSLTALANALNTTAHALM 60


>gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 175

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE KL+QKEI      ++  +S  E G+S I  +    LA      +  LL
Sbjct: 2  NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLL 59


>gi|284028350|ref|YP_003378281.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283807643|gb|ADB29482.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 232

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RK A  T   +    G +  +I+ LE G+    +  +  LA  L T L
Sbjct: 3  LGPEFRARRKAAGRTIASVAVDAGLSVPYIANLENGRGNPTLATLDRLATALGTHL 58


>gi|188587172|ref|YP_001918717.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351859|gb|ACB86129.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +R+   L  K++   TG +   +S++E G+   ++ ++  ++  L+ PL
Sbjct: 16 GETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPL 70


>gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521]
 gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521]
 gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 156

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  RK+A LTQ E+      + S I   ET K  ++++ +  ++  L+  +  
Sbjct: 1  MTIGARIRTSRKKANLTQAELAKLIDVSPSSIRMYETNKRNVSLEILKKISTALNISISD 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|167771935|ref|ZP_02443988.1| hypothetical protein ANACOL_03308 [Anaerotruncus colihominis DSM
          17241]
 gi|167665733|gb|EDS09863.1| hypothetical protein ANACOL_03308 [Anaerotruncus colihominis DSM
          17241]
          Length = 70

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N    R +  L+Q+E+  R G      +E+E  ++   +  +  L+H    P+ +L
Sbjct: 6  ILAWNLLRHRYDNNLSQEELAWRIGMDVKRYAEIEHAQAHTTLLTLDKLSHATGIPVPEL 65

Query: 81 LKP 83
          L P
Sbjct: 66 LTP 68


>gi|161508263|ref|YP_001569094.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253734835|ref|ZP_04869000.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|282912706|ref|ZP_06320501.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|160369778|gb|ABX30747.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253727208|gb|EES95937.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|270269068|gb|ACZ66060.1| hypothetical protein SAP035B_020 [Staphylococcus aureus]
 gi|270269096|gb|ACZ66088.1| hypothetical protein SAP036A_016 [Staphylococcus aureus]
 gi|270269128|gb|ACZ66120.1| hypothetical protein SAP042A_015 [Staphylococcus aureus]
 gi|270300247|gb|ACZ69053.1| hypothetical protein SAP058A_010 [Staphylococcus aureus]
 gi|270300466|gb|ACZ69272.1| hypothetical protein SAP071A_016 [Staphylococcus aureus]
 gi|282323431|gb|EFB53748.1| DNA-binding protein [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|312439078|gb|ADQ78148.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH60]
 gi|320143353|gb|EFW35135.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
          MRSA177]
          Length = 113

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      +  L+
Sbjct: 3  LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITIDHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|114800095|ref|YP_759955.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114740269|gb|ABI78394.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 479

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +E+ +     R +R+   +TQ ++    G + S+I+ +E  +  I+ + ++ LA   D
Sbjct: 5  KEKTLIGPRVRRLRRTLGITQAQMAEDLGVSASYINLIEANQRPISANLLLTLARVYD 62


>gi|21222694|ref|NP_628473.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|8248800|emb|CAB93061.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 279

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP      P   D     R +     R+ R+++ L+Q+E+  R   + S+I +LE+G   
Sbjct: 1  MPG-----PKDLDPSSSPRALLGAELRHAREKSGLSQEELGARLFVSGSFIGQLESGTRR 55

Query: 61 INIDNMIILAHTLDTP 76
          +  +   +L   LDT 
Sbjct: 56 MQPEYARLLDDVLDTE 71


>gi|85708237|ref|ZP_01039303.1| hypothetical protein NAP1_03340 [Erythrobacter sp. NAP1]
 gi|85689771|gb|EAQ29774.1| hypothetical protein NAP1_03340 [Erythrobacter sp. NAP1]
          Length = 223

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            + +  R     TQK++  R G  QS IS++E G   + + +++ +A  L   L
Sbjct: 25 AASVKEARTAKGFTQKQLGGRVGLPQSHISKIENGCVDLQLSSLVEIARALGLEL 79


>gi|315300972|ref|ZP_07872315.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          ivanovii FSL F6-596]
 gi|313630659|gb|EFR98449.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          ivanovii FSL F6-596]
          Length = 111

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  R    +  IS  E G    N D +  LA   +  L  
Sbjct: 5  KFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|303230548|ref|ZP_07317302.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514789|gb|EFL56777.1| helix-turn-helix protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 149

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  LA   +  L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|284047052|ref|YP_003397392.1| MerR family transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951273|gb|ADB54017.1| transcriptional regulator, MerR family [Conexibacter woesei DSM
           14684]
          Length = 283

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R++  LT +E   R G + S++S +E G+  +    +  +A     P+  +
Sbjct: 92  GDTIRRARRDRGLTLREAAARIGVSASFLSSVERGEVGVTTQFVARVADAFLMPMSGM 149


>gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 195

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R     T  ++   TG + S +S LE+G+    ++ ++ LA +   PL +L+
Sbjct: 14 VGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQRRPTLELLLPLARSHRVPLDELV 73


>gi|148256753|ref|YP_001241338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408926|gb|ABQ37432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1]
          Length = 271

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
             + R  R+   L+Q ++      +   +S +ETG++  + D ++ LA  LD PL +
Sbjct: 17 VGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPLRE 74


>gi|22124613|ref|NP_668036.1| hypothetical protein y0699 [Yersinia pestis KIM 10]
 gi|45440452|ref|NP_991991.1| putative transcriptional regulator [Yersinia pestis biovar
          Microtus str. 91001]
 gi|51594841|ref|YP_069032.1| transcriptional regulatory protein [Yersinia pseudotuberculosis
          IP 32953]
 gi|108808978|ref|YP_652894.1| putative transcriptional regulator [Yersinia pestis Antiqua]
 gi|108810767|ref|YP_646534.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|145600549|ref|YP_001164625.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|153950502|ref|YP_001402542.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|153997475|ref|ZP_02022575.1| putative transcriptional regulatory protein [Yersinia pestis
          CA88-4125]
 gi|162420428|ref|YP_001608296.1| DNA-binding protein [Yersinia pestis Angola]
 gi|165925798|ref|ZP_02221630.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165936806|ref|ZP_02225373.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|166010118|ref|ZP_02231016.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166214289|ref|ZP_02240324.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167399645|ref|ZP_02305169.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167420662|ref|ZP_02312415.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167423333|ref|ZP_02315086.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|167467386|ref|ZP_02332090.1| DNA-binding protein [Yersinia pestis FV-1]
 gi|170025937|ref|YP_001722442.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          YPIII]
 gi|186893849|ref|YP_001870961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          PB1/+]
 gi|218930499|ref|YP_002348374.1| putative transcriptional regulator [Yersinia pestis CO92]
 gi|229839137|ref|ZP_04459296.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229896626|ref|ZP_04511793.1| putative transcriptional regulatory protein [Yersinia pestis
          Pestoides A]
 gi|229899701|ref|ZP_04514842.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229900965|ref|ZP_04516089.1| putative transcriptional regulatory protein [Yersinia pestis
          Nepal516]
 gi|270489146|ref|ZP_06206220.1| helix-turn-helix containing protein [Yersinia pestis KIM D27]
 gi|294505187|ref|YP_003569249.1| putative transcriptional regulatory protein [Yersinia pestis
          Z176003]
 gi|21957418|gb|AAM84287.1|AE013672_5 hypothetical [Yersinia pestis KIM 10]
 gi|45435309|gb|AAS60868.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Microtus str. 91001]
 gi|51588123|emb|CAH19729.1| putative transcriptional regulatory protein [Yersinia
          pseudotuberculosis IP 32953]
 gi|108774415|gb|ABG16934.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108780891|gb|ABG14949.1| putative transcriptional regulatory protein [Yersinia pestis
          Antiqua]
 gi|115349110|emb|CAL22073.1| putative transcriptional regulatory protein [Yersinia pestis
          CO92]
 gi|145212245|gb|ABP41652.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149289112|gb|EDM39192.1| putative transcriptional regulatory protein [Yersinia pestis
          CA88-4125]
 gi|152961997|gb|ABS49458.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|162353243|gb|ABX87191.1| DNA-binding protein [Yersinia pestis Angola]
 gi|165915455|gb|EDR34065.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165922410|gb|EDR39587.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165991025|gb|EDR43326.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166204521|gb|EDR49001.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166961468|gb|EDR57489.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167052149|gb|EDR63557.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167057503|gb|EDR67249.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169752471|gb|ACA69989.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis YPIII]
 gi|186696875|gb|ACC87504.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis PB1/+]
 gi|229682304|gb|EEO78396.1| putative transcriptional regulatory protein [Yersinia pestis
          Nepal516]
 gi|229687193|gb|EEO79268.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229695503|gb|EEO85550.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229700404|gb|EEO88436.1| putative transcriptional regulatory protein [Yersinia pestis
          Pestoides A]
 gi|262363249|gb|ACY59970.1| putative transcriptional regulatory protein [Yersinia pestis
          D106004]
 gi|262367180|gb|ACY63737.1| putative transcriptional regulatory protein [Yersinia pestis
          D182038]
 gi|270337650|gb|EFA48427.1| helix-turn-helix containing protein [Yersinia pestis KIM D27]
 gi|294355646|gb|ADE65987.1| putative transcriptional regulatory protein [Yersinia pestis
          Z176003]
 gi|320016691|gb|ADW00263.1| putative transcriptional regulatory protein [Yersinia pestis
          biovar Medievalis str. Harbin 35]
          Length = 103

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R   +N+   +RK  +LTQ +I  R G ++  IS+ E G+S   +D +I     +D 
Sbjct: 33 RKALLNSLVAVRKSKQLTQVDIAKRIGVSRQAISKFEKGESAPTLDTLIGYTAAMDI 89


>gi|332991834|gb|AEF01889.1| DNA-binding protein [Alteromonas sp. SN2]
          Length = 74

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E     NN R +R    ++TQ+E+ ++ G  +  I  +E GK + +++    +A   D P
Sbjct: 3  EHYSITNNIRTLRFLVDEMTQQELASKVGVTRQTIMAIEKGKYSPSLEVAFKIALVFDKP 62

Query: 77 LWKLLK 82
            ++ +
Sbjct: 63 FNEVFQ 68


>gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
 gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
          Length = 216

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  + +RKEA LTQ E+  + G  +  IS  E   S  N + +  L+      + +L
Sbjct: 5  GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSEPNSETLSELSKLFGVSVAQL 62



 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F    R++ +E K+++ E   R GF +        G    +I+++I +A  L+     LL
Sbjct: 86  FKMRIRDLMEEQKMSEDEFAQRVGFHKEEKDAYLYGNKMPSIEDLIKIAGALNVSTDYLL 145


>gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6]
 gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6]
          Length = 113

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +          R E  LTQ+E+  R G     IS LE G   +++  ++ LA   D  
Sbjct: 6  PTQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVELSVVKLMQLADIFDCR 65

Query: 77 LWKLLK 82
          + +LL 
Sbjct: 66 MDELLT 71


>gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
 gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
          Length = 69

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +RK+++L+Q+ + ++ G  ++ IS  ETG S I+++N   +A      +  LL
Sbjct: 7  NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLL 64


>gi|302545781|ref|ZP_07298123.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302463399|gb|EFL26492.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 469

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  R+E  LTQ+ +  R   ++S +S++E G+   +   +   A  L      LL
Sbjct: 81  GARIARTRRERGLTQQGLAMRANVSKSLLSKVECGQKPASPSLIAACARALSVTTSDLL 139


>gi|299535967|ref|ZP_07049286.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298728572|gb|EFI69128.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 183

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 31/59 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            + IR++  L+  ++   TG +++ ++++E G++   +  +  +A  +      LL+P
Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRMSFSSLLQP 69


>gi|259502266|ref|ZP_05745168.1| DNA-binding protein [Lactobacillus antri DSM 16041]
 gi|259169884|gb|EEW54379.1| DNA-binding protein [Lactobacillus antri DSM 16041]
          Length = 204

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK+  LTQ ++ ++    +  IS  E GKS  ++  ++ L+      L  LL
Sbjct: 3  FSTQIKEQRKKLGLTQADVAHQLFVTRQTISNWEQGKSYPDLAMLVKLSEVYRISLDTLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|297200612|ref|ZP_06918009.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|297147685|gb|EDY53778.2| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 195

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|224542166|ref|ZP_03682705.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524934|gb|EEF94039.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM
          15897]
          Length = 121

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +  RK   LTQ+ +       +  IS+ E G S  + D +I LA  LD  + KL
Sbjct: 1  MLSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILDVSVSKL 60

Query: 81 L 81
          +
Sbjct: 61 I 61


>gi|170752098|ref|YP_001758358.1| XRE family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170658620|gb|ACB27675.1| transcriptional regulator, XRE family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 239

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +  R+ A+LTQ+E+ +  G +Q  I  LE G+  +  +    LA  L      LL P
Sbjct: 4  LKQFRERARLTQQELADAAGTSQPQIRRLEAGERKLTKEWAERLAPALGINAETLLFP 61


>gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens
          NCTC 8239]
 gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens
          NCTC 8239]
          Length = 170

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + IRKE  LTQKE   +   ++  I + E  +    I+ +  +A  LD    +L+ 
Sbjct: 5  GDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVEPRIEVLREIATALDISFSELIN 64

Query: 83 P 83
          P
Sbjct: 65 P 65


>gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 205

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R +  L+Q+E+  R    ++ ++++E+G   +    +   A  L   L  LL+
Sbjct: 7  GQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRELAKFAEALGISLGTLLE 66


>gi|15963850|ref|NP_384203.1| hypothetical protein SMc02620 [Sinorhizobium meliloti 1021]
 gi|307309551|ref|ZP_07589206.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
           BL225C]
 gi|307320383|ref|ZP_07599800.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83]
 gi|15073025|emb|CAC41484.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti
           1021]
 gi|306893949|gb|EFN24718.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83]
 gi|306900011|gb|EFN30632.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
           BL225C]
          Length = 243

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R  RK+  +T  ++ + T  +   +S++E G ++ ++  +  L+  L  P+    +
Sbjct: 57  GHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSLTTLQTLSRALGVPITAFFR 116


>gi|150015531|ref|YP_001307785.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149901996|gb|ABR32829.1| putative transcriptional regulator, XRE family [Clostridium
          beijerinckii NCIMB 8052]
          Length = 436

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RK+  +T K++  +       IS +E+G+S  ++D +  LA  L+T +
Sbjct: 2  EILSLGEKIKRRRKQLNMTLKDLA-KDRITPGQISLVESGRSNPSVDLLEYLADALNTNV 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|331092591|ref|ZP_08341410.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330400602|gb|EGG80216.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE KL+Q+E+  +    +  +S  E   +  +I  +  LA   +  + ++L
Sbjct: 3  LGEKLKKYRKERKLSQREVAEKLNVTRQVVSYWECDLTIPDIQILQQLAELYEIDMEEML 62

Query: 82 K 82
          +
Sbjct: 63 Q 63


>gi|325848872|ref|ZP_08170382.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480516|gb|EGC83578.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 168

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R E  +TQ+E+  +TG+  +  IS +E G+  ++   + I A+ L T    L+
Sbjct: 6  NNIKKRRNELNMTQEELAKKTGYKTKGAISRIEKGERDLSQSQIEIFANALSTTPSYLM 64


>gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 199

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 36/60 (60%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +N+RK   ++Q+++ ++ G ++  +S+ E+ +S  ++D +II++   D     +LK
Sbjct: 4  ADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVPDLDKIIIMSEYFDVTTDYILK 63


>gi|291541679|emb|CBL14789.1| Helix-turn-helix [Ruminococcus bromii L2-63]
          Length = 64

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++    R++R++  + Q E+    G  Q+  S  E G  +I ++++I LA         +
Sbjct: 1  MYFKRLRDLREDHDMKQSEVAEYLGIQQTVYSRYERGFQSIPVEHLIKLADLYKVSTDYI 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp.
          carotovorum WPP14]
          Length = 188

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R+E   +       TG +++ + ++E G+S+  +  +  +A  ++      ++
Sbjct: 10 GNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGMNVAFSSFIE 69

Query: 83 P 83
          P
Sbjct: 70 P 70


>gi|291087267|ref|ZP_06345889.2| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
 gi|291075621|gb|EFE12985.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
          Length = 159

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIIL 69
           I +ER   M+F    +  R EA LTQ E+  + G     I   E G    + +  +  +
Sbjct: 13 VIKKERGISMVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKI 72

Query: 70 AHTLDTPLWKLL 81
          A  L+T    LL
Sbjct: 73 ADALNTTTEYLL 84


>gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM
          10507]
 gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM
          10507]
          Length = 341

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+       +RK+   +Q+E+  + G ++  IS+ E   ST  +  +++L+         
Sbjct: 1  MLLSEKILTLRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|160893361|ref|ZP_02074147.1| hypothetical protein CLOL250_00911 [Clostridium sp. L2-50]
 gi|156864936|gb|EDO58367.1| hypothetical protein CLOL250_00911 [Clostridium sp. L2-50]
          Length = 109

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  N     RK+  LTQ E+    G +    +++E G   + +D ++ +   L      
Sbjct: 7  HVIGNKLLQFRKKVHLTQIEVAELAGLSDRTYADIERGNVNMRLDTLLRICSVLHITPND 66

Query: 80 LLK 82
          +L 
Sbjct: 67 ILT 69


>gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str.
          Philadelphia 1]
 gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 207

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          ++      +  RK  K T  ++   TGF+   IS  E G  T    +  IL   L   P 
Sbjct: 12 KLKIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGTRTPRFKDAEILGSALGVSPT 71

Query: 78 WKLL 81
          W L 
Sbjct: 72 WLLF 75


>gi|49478848|ref|YP_039023.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52140529|ref|YP_086300.1| transcriptional regulator [Bacillus cereus E33L]
 gi|118480088|ref|YP_897239.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196043797|ref|ZP_03111034.1| conserved domain protein [Bacillus cereus 03BB108]
 gi|218906200|ref|YP_002454034.1| hypothetical protein BCAH820_5112 [Bacillus cereus AH820]
 gi|225866980|ref|YP_002752358.1| hypothetical protein BCA_5143 [Bacillus cereus 03BB102]
 gi|228930031|ref|ZP_04093041.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228936303|ref|ZP_04099102.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228948731|ref|ZP_04111009.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229124541|ref|ZP_04253726.1| Transcriptional regulator, Cro/CI [Bacillus cereus 95/8201]
 gi|49330404|gb|AAT61050.1| conserved hypothetical protein, possible transcriptional
          regulator [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51973998|gb|AAU15548.1| transcriptional regulator [Bacillus cereus E33L]
 gi|118419313|gb|ABK87732.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196025133|gb|EDX63803.1| conserved domain protein [Bacillus cereus 03BB108]
 gi|218536022|gb|ACK88420.1| conserved domain protein [Bacillus cereus AH820]
 gi|225789784|gb|ACO30001.1| conserved domain protein [Bacillus cereus 03BB102]
 gi|228658881|gb|EEL14536.1| Transcriptional regulator, Cro/CI [Bacillus cereus 95/8201]
 gi|228811038|gb|EEM57381.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228823419|gb|EEM69252.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228829530|gb|EEM75157.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|324328934|gb|ADY24194.1| hypothetical protein YBT020_24835 [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 75

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN   +R E + +Q ++ N+ G ++  I+ +E  +   ++     +AH L     ++
Sbjct: 6  ILQNNLVVLRAEKRWSQTDLANKAGVSRQTIASIEANRYNPSLILAFEIAHILGKEFHEV 65

Query: 81 LK 82
           +
Sbjct: 66 FQ 67


>gi|107027653|ref|YP_625164.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116693636|ref|YP_839169.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|170737089|ref|YP_001778349.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|105897027|gb|ABF80191.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia AU 1054]
 gi|116651636|gb|ABK12276.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia cenocepacia HI2424]
 gi|169819277|gb|ACA93859.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 192

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ ++ ++  +AH L  
Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 69


>gi|328948034|ref|YP_004365371.1| hypothetical protein Tresu_R0025 [Treponema succinifaciens DSM
          2489]
 gi|328448358|gb|AEB14074.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 109

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 17 RERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           ER I   F  N +  R++   +Q+++      + + IS  ETG+   +  N+  L   L
Sbjct: 4  TERNIAATFARNLKFFRQKCNYSQEKLAELIDVSPATISNYETGEMWPSRQNLANLVEVL 63

Query: 74 DTPLWKLL 81
              ++L 
Sbjct: 64 KVHPYQLF 71


>gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii
          ACS-065-V-Col13]
          Length = 143

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + +R    LTQKE+  ++G   + I   E G  + + + +  ++  LD  +  
Sbjct: 1  MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISKALDCDISA 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|313905761|ref|ZP_07839120.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469367|gb|EFR64710.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 111

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R +  L+Q E  N    A+  ISE+E GK +I+ D +   +   +  + +LL
Sbjct: 6  GKKLKEARVKKGLSQDEAANLMNVAKRAISEMEAGKRSISADELAQFSRIYNVDVRELL 64


>gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 182

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RKE  LT KEI    G + +  ++ E  ++  +I+++I +A      L  L
Sbjct: 1  MIGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM
          5427]
 gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 189

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + IRK    +Q  +  + G  ++  S  E      N+  +  +   LD  +  ++
Sbjct: 10 GTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNNREPNLKTIEKICEILDVTISDIV 68


>gi|258517109|ref|YP_003193331.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780814|gb|ACV64708.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 94

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K DE       L+ R   ++     R    +TQ+E+  R G  +S IS LE+G    +++
Sbjct: 17 KDDEFKAEYEKLKPRYDVISQIIEARTSQNITQEELALRVGTQKSNISRLESGTYNPSLE 76

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  +A  L   +   LK
Sbjct: 77 FLAKVARCLGKEVQVTLK 94


>gi|152967479|ref|YP_001363263.1| helix-turn-helix domain protein [Kineococcus radiotolerans
          SRS30216]
 gi|151361996|gb|ABS04999.1| helix-turn-helix domain protein [Kineococcus radiotolerans
          SRS30216]
          Length = 513

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +      R  R     T  ++    G AQS +S++E GK    +  +  +A  L+   
Sbjct: 29 DALTVGRRIRYHRGVRGWTLAQLGEAVGTAQSQLSQVENGKREPRLSLVAAVARALEVTP 88

Query: 78 WKLLKP 83
            LL P
Sbjct: 89 ADLLDP 94


>gi|91217959|ref|ZP_01254912.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755]
 gi|91183936|gb|EAS70326.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755]
          Length = 85

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 26/57 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +   + +  RK  ++TQ ++      + + + ++E G++   ++ +  +A  L   
Sbjct: 17 KMVGKSVKERRKTLRVTQPQVAELADISVNTLYKIERGQANPTLETLTKVADVLGME 73


>gi|332363049|gb|EGJ40836.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 108

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I     +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNESVENVFR 102


>gi|319939030|ref|ZP_08013394.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
 gi|319812080|gb|EFW08346.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV]
          Length = 91

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N R+ A LTQ+E+ + +   QS I+ +E G    +I+ M  +A  L+  L
Sbjct: 38 NARQNAGLTQRELADLSHVPQSTIARIERG-HNTSIETMSKIAFALNQKL 86


>gi|317506449|ref|ZP_07964251.1| hypothetical protein HMPREF9336_00621 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316255259|gb|EFV14527.1| hypothetical protein HMPREF9336_00621 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 112

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     + R +R   + T +E+ N    +  ++SE+E G+   + + +  +   L+ P+ 
Sbjct: 6  REALGASLRQLRLGQRRTLREVSNAASMSLGYLSEIERGQKEASSELLAAICGALEVPIP 65

Query: 79 KLLK 82
           +L+
Sbjct: 66 HVLR 69


>gi|281416439|ref|YP_003347359.1| Cro repressor protein [Enterococcus phage phiFL4A]
 gi|270209615|gb|ACZ64154.1| Cro repressor protein [Enterococcus phage phiFL4A]
          Length = 70

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           + R  R +  LTQK +   TG  ++ I  +E G+S  +    I+LA  L+     L
Sbjct: 6  ESLRAARIKKSLTQKRLAELTGVTETTIRNIENGRSCPSFKLSIMLAKLLNVDFETL 62


>gi|26988905|ref|NP_744330.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983715|gb|AAN67794.1|AE016410_10 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
 gi|313499699|gb|ADR61065.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK   LT  E+  R G +  ++S++E G S   + ++  ++  L       +KL K
Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957]
 gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957]
          Length = 208

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D    +R +     R +R+   L+ +E+  RTG +   IS+LE G +T ++  + +L+ 
Sbjct: 19 PDDGASDRRL-GECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSL 77

Query: 72 TLDTPL 77
           L  P+
Sbjct: 78 ALQVPI 83


>gi|295694790|ref|YP_003588028.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
 gi|295410392|gb|ADG04884.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912]
          Length = 74

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  RK   LTQ+E+ +R   + + +  +E G  T +   +  +   L     +L+
Sbjct: 5  LGSRIRAFRKLKNLTQRELADRIHLSVAVLGAIERGAKTPSPHVLRAIGEALGIDEEELV 64


>gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 173

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 33/64 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++       + +R++  +TQ+++      ++  +S  ETG +  ++D +I +A   +  +
Sbjct: 2  DQQKIGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSNMPDLDILIEIADYYEIDI 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 RELL 65


>gi|300770302|ref|ZP_07080181.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33861]
 gi|300762778|gb|EFK59595.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33861]
          Length = 220

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +R    L+Q+         +  IS  E  ++   ID  + +A+    PL  L+
Sbjct: 5  GYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63


>gi|227538776|ref|ZP_03968825.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
 gi|227241285|gb|EEI91300.1| conserved hypothetical protein [Sphingobacterium spiritivorum
          ATCC 33300]
          Length = 220

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +R    L+Q+         +  IS  E  ++   ID  + +A+    PL  L+
Sbjct: 5  GYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63


>gi|218900380|ref|YP_002448791.1| DNA-binding protein [Bacillus cereus G9842]
 gi|218541269|gb|ACK93663.1| DNA-binding protein [Bacillus cereus G9842]
          Length = 63

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSLF 59


>gi|297618899|ref|YP_003707004.1| XRE family transcriptional regulator [Methanococcus voltae A3]
 gi|297377876|gb|ADI36031.1| transcriptional regulator, XRE family [Methanococcus voltae A3]
          Length = 64

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ E+  + G  +  IS +E GK   ++     L+   +  + ++ 
Sbjct: 3  NKIKVFRAMNDLTQDELAKKIGVTRQTISAIEKGKYDPSLIIAFKLSKLFNVKIEEIF 60


>gi|157372360|ref|YP_001480349.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157324124|gb|ABV43221.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 84

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          +     ++ R+ A LTQ+++    G     A+S IS+ E+G  T     M  LA  LD P
Sbjct: 1  MVPQRLKSARQRAGLTQEKLGVLAGIDEATARSRISQYESGTYTPTFTTMCALARVLDVP 60


>gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator
          MJ0272
          Length = 66

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+++  + G ++  I  +E GK   ++     +A      +  + 
Sbjct: 3  NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60


>gi|321157449|emb|CBW39427.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
          Length = 420

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|313158570|gb|EFR57964.1| transcriptional regulator, y4mF family [Alistipes sp. HGB5]
          Length = 70

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            N  +  RK  K+TQ+ +    G   + ++++E G+    I+ +  +  TL   L
Sbjct: 7  VGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGNPTIEVLEKILDTLGLEL 62


>gi|302188027|ref|ZP_07264700.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          syringae 642]
          Length = 155

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R    LTQ+ I    G  + ++S+LE GKS+  +D +  L+         L+
Sbjct: 9  LRALRAHKGLTQESIPE--GSNRQYLSQLEHGKSSPTLDKLQDLSKAYGASPLLLV 62


>gi|302344010|ref|YP_003808539.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301640623|gb|ADK85945.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
           2075]
          Length = 123

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R++   +  R +R    +T +++ +  G   S IS++E GK +++ + +  +A  L  
Sbjct: 58  VDRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGKRSMSTELLKKMAEALRV 117

Query: 76  PLWKLL 81
               LL
Sbjct: 118 DAEMLL 123


>gi|326204530|ref|ZP_08194387.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325985323|gb|EGD46162.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 111

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              R+ R++  LT+++   + G +  ++ ++E G+  +++   + +A +L 
Sbjct: 11 GLRIRSEREKIGLTREQFAEQVGISPLYVGQIERGQRAMSLKTFVKIADSLH 62


>gi|228960181|ref|ZP_04121838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228799449|gb|EEM46409.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 114

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E   +   ++S +  LE   +  ++D +  +A  L   +  L+
Sbjct: 4  FGENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALM 63


>gi|148379638|ref|YP_001254179.1| phage transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|237795101|ref|YP_002862653.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|148289122|emb|CAL83216.1| phage transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|229261266|gb|ACQ52299.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 119

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N RK+ ++TQ+E     G  +  +S LE G    +ID    L+     P+ +L+
Sbjct: 7  LKNDRKQKEMTQEEYAKLIGITRGTLSHLERG-REPSIDTSKKLSQYFGKPITELI 61


>gi|118618704|ref|YP_907036.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
 gi|118570814|gb|ABL05565.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99]
          Length = 108

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 6  REVIGDVLRGERTSQGRTLREVFDTARVSLGYLSEIERGRKEPSSELLNAICDALQVPLS 65

Query: 79 KLL 81
          ++L
Sbjct: 66 EVL 68


>gi|84385211|ref|ZP_00988243.1| DNA-binding protein [Vibrio splendidus 12B01]
 gi|84379808|gb|EAP96659.1| DNA-binding protein [Vibrio splendidus 12B01]
          Length = 188

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             N + +R+E   +  +    TG +++ + ++E G+S+  +  +  +A   +  L
Sbjct: 7  VGVNLKRLRQEKGWSLDKTAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSL 62


>gi|331702631|ref|YP_004399590.1| helix-turn-helix domain-containing protein [Lactobacillus
          buchneri NRRL B-30929]
 gi|329129974|gb|AEB74527.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL
          B-30929]
          Length = 64

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN +  R+  +L+Q+ I  R G ++  IS+ E   +  +I+N++ L    D  + +LL
Sbjct: 4  LGNNLKEFRQYNELSQEIIACRLGVSRQAISQWEHNLTYPDIENLVRLTQIFDCDINELL 63


>gi|332716375|ref|YP_004443841.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325063060|gb|ADY66750.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 472

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E++      R +R+ A+ TQ +   R G + S+++++E  +  ++   ++ L       +
Sbjct: 4  EKLFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLDV 63

Query: 78 WKL 80
           +L
Sbjct: 64 TEL 66


>gi|302555762|ref|ZP_07308104.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
 gi|302473380|gb|EFL36473.1| transcriptional regulator [Streptomyces viridochromogenes DSM
          40736]
          Length = 196

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N R  R  A L+  E+  R   ++  +  LE  +   N   ++ LA TL   +  LL
Sbjct: 16 LAHNVRAARTRAGLSLDELGRRAKVSKGALVGLEKAQGNPNFATLVRLADTLGVSVSALL 75

Query: 82 K 82
          +
Sbjct: 76 E 76


>gi|298376898|ref|ZP_06986852.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_19]
 gi|298265882|gb|EFI07541.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 3_1_19]
          Length = 101

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK A+LTQ E+  R G  + +IS +E G +   +  +  +A  + 
Sbjct: 42 AQILLDARKNARLTQAELAKRIGADKGYISRIERGLTVPTVSTLYRIAAAMG 93


>gi|239637715|ref|ZP_04678683.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239596674|gb|EEQ79203.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 66

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI +N  +  R   K++Q+E+  R G ++  I+ +E  K   ++   I +A  L   L  
Sbjct: 1  MIALNRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLND 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|149927186|ref|ZP_01915443.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp.
          MED105]
 gi|149824125|gb|EDM83346.1| transcriptional regulator, Cro/CI family protein [Limnobacter sp.
          MED105]
          Length = 257

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R++R   K++Q ++  R G +Q  +S +ETGK++ + + ++ L   LD PL +
Sbjct: 11 GIRLRDLRARQKISQLDLALRVGVSQRHLSCIETGKASASKEMLLALLEGLDAPLNE 67


>gi|148548763|ref|YP_001268865.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512821|gb|ABQ79681.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 184

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK   LT  E+  R G +  ++S++E G S   + ++  ++  L       +KL K
Sbjct: 14 IRDLRKFKGLTLGELAQRIGRSVGFLSQVERGVSRPTVADLTAISEELGVSTAYFYKLDK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|329891038|ref|ZP_08269381.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
 gi|328846339|gb|EGF95903.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC
          11568]
          Length = 72

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R  A  +TQ ++  R G  +  I  +E GK + +++    +A      + ++ +
Sbjct: 10 NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAQVFGVEIGEVFQ 69


>gi|292490738|ref|YP_003526177.1| hypothetical protein Nhal_0606 [Nitrosococcus halophilus Nc4]
 gi|291579333|gb|ADE13790.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 127

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 7   DEPHLSDAILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           DE ++   +  E ++   N  +  R    LTQ ++  + G +QS +  +E G+    I  
Sbjct: 45  DEENIPQEV-VESLVAGENPLKVWRTYRGLTQAQLAEQVGLSQSHLVTMEKGERKGTIKV 103

Query: 66  MIILAHTLDTPLWKL 80
           +  +A TL   +  L
Sbjct: 104 LKRIAQTLRVDIDDL 118


>gi|291514552|emb|CBK63762.1| Helix-turn-helix [Alistipes shahii WAL 8301]
          Length = 76

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
             V+  + +R+E  LTQ+ +R  T      I  +E+G+ +I++  +  L    + PL  
Sbjct: 12 KQVVDRLKTVRRERGLTQENVRFDTDLN---IGRIESGRHSISLTTLADLCDYYNVPLED 68

Query: 80 LLK 82
            K
Sbjct: 69 FFK 71


>gi|226951015|ref|YP_002806106.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841154|gb|ACO83820.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 220

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N  +  R +  LTQK++  + G A+++I+E+E+G+  IN   M  ++  L  
Sbjct: 4  VSNKIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57


>gi|224540522|ref|ZP_03681061.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224517863|gb|EEF86968.1| hypothetical protein BACCELL_05436 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 105

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+R + E  L+        +     +  R+   LTQ+++    G  ++ IS++E+GKS I
Sbjct: 23 PKRDKYEADLNA------FLIGEAIKQAREARNLTQEQLGELMGVKRAQISKIESGKS-I 75

Query: 62 NIDNMIILAHTLDTPLWKL 80
          +   ++     +      L
Sbjct: 76 SFSTIVRAFKAMGVNTASL 94


>gi|56424516|gb|AAV91189.1| repressor [Vibrio cholerae]
 gi|56424526|gb|AAV91194.1| repressor [Vibrio cholerae]
          Length = 85

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  R++R E  L Q+E+ N  G  ++     E G  +  ++ +  LA     P+ +L
Sbjct: 1  MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|331702111|ref|YP_004399070.1| XRE family transcriptional regulator [Lactobacillus buchneri NRRL
          B-30929]
 gi|329129454|gb|AEB74007.1| transcriptional regulator, XRE family [Lactobacillus buchneri
          NRRL B-30929]
          Length = 66

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK+  ++Q  +  + G A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NRVREYRKQVGISQFALAEKVGVARQTINLIENDKYNPSLKLCISLAEELGTDLNTLF 59


>gi|301799274|emb|CBW31797.1| unnamed protein product [Streptococcus pneumoniae OXC141]
          Length = 287

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGNV-ISRTSLSKIESGKATPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|302343044|ref|YP_003807573.1| phage repressor [Desulfarculus baarsii DSM 2075]
 gi|301639657|gb|ADK84979.1| putative phage repressor [Desulfarculus baarsii DSM 2075]
          Length = 249

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H+   +L       +  +  R+     QK+        QS +S +E G+   + + +  L
Sbjct: 9  HMPSKMLPLPPEIGDRVKAARESFGYNQKDFAELLAIGQSTLSRIENGERPPSPELLYRL 68

Query: 70 AHTL-DTPLWKLL 81
          A       L +LL
Sbjct: 69 ALKFPSVDLRELL 81


>gi|269838403|ref|YP_003320631.1| hypothetical protein Sthe_2392 [Sphaerobacter thermophilus DSM
          20745]
 gi|269787666|gb|ACZ39809.1| protein of unknown function DUF955 [Sphaerobacter thermophilus
          DSM 20745]
          Length = 406

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+ A LTQ+E  +  G   + IS  E  + T  + ++  LA    T +  LL
Sbjct: 7  LGARLRAAREWAGLTQEEAASALGVTHALISYWENDRRTPGLGHLTRLAEIYGTTVTNLL 66

Query: 82 KP 83
           P
Sbjct: 67 DP 68


>gi|260911954|ref|ZP_05918518.1| hypothetical protein HMPREF6745_2473 [Prevotella sp. oral taxon
          472 str. F0295]
 gi|260633901|gb|EEX52027.1| hypothetical protein HMPREF6745_2473 [Prevotella sp. oral taxon
          472 str. F0295]
          Length = 78

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D I  ER        ++R+E   T +++  +   +   +  LE G++ I + ++I +A+ 
Sbjct: 8  DMIKSERKRIGVRIASLREEKGYTHEQLAKQADMSIGELIRLEKGRNNIKLVDLIAVANA 67

Query: 73 LDTPLWKL 80
          L   +  L
Sbjct: 68 LGVSIELL 75


>gi|256786232|ref|ZP_05524663.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289770123|ref|ZP_06529501.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289700322|gb|EFD67751.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 279

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP      P   D     R +     R+ R+++ L+Q+E+  R   + S+I +LE+G   
Sbjct: 1  MPG-----PKDLDPSSSPRALLGAELRHAREKSGLSQEELGARLFVSGSFIGQLESGTRR 55

Query: 61 INIDNMIILAHTLDTP 76
          +  +   +L   LDT 
Sbjct: 56 MQPEYARLLDDVLDTE 71


>gi|228999777|ref|ZP_04159351.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock3-17]
 gi|229007332|ref|ZP_04164931.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock1-4]
 gi|228753937|gb|EEM03376.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock1-4]
 gi|228759984|gb|EEM08956.1| Transcriptional regulator,Cro/CI [Bacillus mycoides Rock3-17]
          Length = 70

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  NN   +R E + +Q E+ NR G ++  I+ +E  +   ++     +AH L     ++
Sbjct: 1  MLQNNLIALRAEKRWSQTELANRVGVSRQTIASIEANRYNPSLILAFEIAHVLGKEFHEV 60

Query: 81 LK 82
           +
Sbjct: 61 FQ 62


>gi|229027735|ref|ZP_04183918.1| transcriptional regulator, XRE [Bacillus cereus AH1272]
 gi|228733571|gb|EEL84372.1| transcriptional regulator, XRE [Bacillus cereus AH1272]
          Length = 102

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+      ++S I   E  +   + + +I +A   +     
Sbjct: 2  KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|229099941|ref|ZP_04230863.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29]
 gi|228683486|gb|EEL37442.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29]
          Length = 60

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +  ++Q+++ N+ G  +  I  LE GK   +      +A  L+ P+  L 
Sbjct: 1  MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLF 56


>gi|255656468|ref|ZP_05401877.1| transcriptional regulator, XRE family protein [Clostridium
          difficile QCD-23m63]
          Length = 65

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 25/56 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +RK+  L Q++       ++  IS +E GK   +++    ++   +  + ++ 
Sbjct: 5  VEALRKKKGLNQEDFAKILKVSRQTISSIENGKYNPSLELAFQISDFFEMSIEEIF 60


>gi|224541678|ref|ZP_03682217.1| hypothetical protein CATMIT_00850 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525395|gb|EEF94500.1| hypothetical protein CATMIT_00850 [Catenibacterium mitsuokai DSM
          15897]
          Length = 140

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          KE KLTQ ++ + TG  ++ +S LE      +ID +  LA  LD  +  L +
Sbjct: 5  KEKKLTQAQLADMTGIHRAMLSRLEGQDYIPSIDQLQALAEVLDFEVTDLFE 56


>gi|182684292|ref|YP_001836039.1| hypothetical protein SPCG_1322 [Streptococcus pneumoniae CGSP14]
 gi|194397840|ref|YP_002037950.1| Tn5251 transcriptional regulator Cro/CI family [Streptococcus
          pneumoniae G54]
 gi|307127299|ref|YP_003879330.1| Cro/CI family transcriptional regulator [Streptococcus pneumoniae
          670-6B]
 gi|322388220|ref|ZP_08061824.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|182629626|gb|ACB90574.1| hypothetical protein SPCG_1322 [Streptococcus pneumoniae CGSP14]
 gi|194357507|gb|ACF55955.1| Tn5251 transcriptional regulator Cro/CI family [Streptococcus
          pneumoniae G54]
 gi|218473459|emb|CAV31169.1| hypothetical protein [Streptococcus pneumoniae]
 gi|306484361|gb|ADM91230.1| transcriptional regulator, Cro/CI family [Streptococcus
          pneumoniae 670-6B]
 gi|321140892|gb|EFX36393.1| cro/CI family transcriptional regulator [Streptococcus infantis
          ATCC 700779]
 gi|321156830|emb|CBW38817.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
 gi|321157363|emb|CBW39343.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
 gi|321157383|emb|CBW39362.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
 gi|321157408|emb|CBW39386.1| putative conjugative transposon replication initiation factor
          [Streptococcus pneumoniae]
          Length = 472

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----DTPLW 78
           + +  R    L+Q  +   TG  + ++S++ETGK   + D    L   L     D PL 
Sbjct: 13 QHLKEKRLAYGLSQNRLAVATGITRQYLSDIETGKVKPSEDLQQSLWEALERFNPDAPLE 72

Query: 79 KLL 81
           L 
Sbjct: 73 MLF 75


>gi|169833481|ref|YP_001693628.1| helix-turn-helix domain-containing protein [Streptococcus
          pneumoniae Hungary19A-6]
 gi|168995983|gb|ACA36595.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          Hungary19A-6]
          Length = 287

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGNV-ISRTSLSKIESGKATPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|153009334|ref|YP_001370549.1| hypothetical protein Oant_2004 [Ochrobactrum anthropi ATCC 49188]
 gi|151561222|gb|ABS14720.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC
          49188]
          Length = 470

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ K TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHKATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|148985454|ref|ZP_01818659.1| hypothetical protein CGSSp3BS71_08406 [Streptococcus pneumoniae
          SP3-BS71]
 gi|147922412|gb|EDK73532.1| hypothetical protein CGSSp3BS71_08406 [Streptococcus pneumoniae
          SP3-BS71]
          Length = 97

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGNV-ISRTSLSKIESGKATPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|22536402|ref|NP_687253.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|22533229|gb|AAM99125.1|AE014201_23 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
          Length = 158

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK+  LTQ ++       QS   + E GK++++I+N  ILA      +  LL
Sbjct: 3  NRLKELRKDKGLTQADLAKVINTNQSQYGKYENGKTSLSIENSKILADFFGVSIPYLL 60


>gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri]
          Length = 234

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N    +RKE  LT +++ +  G   + IS  ETGK    ++    L++  D  ++ L
Sbjct: 9  NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLSNYFDVTVYYL 65


>gi|54301972|ref|YP_131965.1| hypothetical protein PBPRB0292 [Photobacterium profundum SS9]
 gi|46915392|emb|CAG22165.1| hypothetical protein PBPRB0292 [Photobacterium profundum SS9]
          Length = 91

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R+E+ LTQ E+  R G     IS LE+G+S  ++  ++  A      L
Sbjct: 36 MREESGLTQDEVAERMGTKAPNISRLESGRSNPSLKTLVSYAQACGFKL 84


>gi|332967946|gb|EGK07034.1| transcriptional regulator [Kingella kingae ATCC 23330]
          Length = 68

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R  R+    +Q+E+  R   A+  I+ +E  +    +   I LAH LDT L  L 
Sbjct: 3  ANQVRQYRQIKGWSQQELAQRVEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61


>gi|315920969|ref|ZP_07917209.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694844|gb|EFS31679.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 105

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     +  R+   LTQ+++    G  ++ IS++E+GKS I+   ++     +      
Sbjct: 35 FLIGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGVKTAS 93

Query: 80 L 80
          L
Sbjct: 94 L 94


>gi|303327169|ref|ZP_07357611.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
 gi|302863157|gb|EFL86089.1| toxin-antitoxin system, antitoxin component, Xre family
          [Desulfovibrio sp. 3_1_syn3]
          Length = 95

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              ++IR+    TQ ++    G +  +I++LE G    +I+ ++ +A         L +
Sbjct: 12 AKTIKDIRESKGWTQAQLAGFAGLSDVYIAKLEQGVRGDSINALVQIAAATGITFADLAR 71


>gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 137

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R  RK   +TQ ++    G  +  +   E+G  T+  + +  +A TL   +  
Sbjct: 1  MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNA 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus A017934/97]
 gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus A017934/97]
          Length = 239

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  R  R +  LTQ ++  +    ++ IS  ETG  T   D++  +AH L+  +  
Sbjct: 8  KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|271962430|ref|YP_003336626.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505605|gb|ACZ83883.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 117

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           +PH         +   +  R IRK   L+QK +  R+G +Q  +S +E G    +I  +
Sbjct: 21 AQPHSEYEQAGRDLELGDQLREIRKRRGLSQKVVAERSGMSQPALSRIEGGGGIPDIATL 80

Query: 67 IILAHTLDT 75
          + L   +  
Sbjct: 81 LRLGAAMGV 89


>gi|256827327|ref|YP_003151286.1| putative transcriptional regulator [Cryptobacterium curtum DSM
          15641]
 gi|256583470|gb|ACU94604.1| predicted transcriptional regulator [Cryptobacterium curtum DSM
          15641]
          Length = 192

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +R+   L+Q+++ +R G   S I+ELE G+   ++  +I +   L   L  L+
Sbjct: 7  LGHKIVTLREAHHLSQQDLADRCGCDVSAIAELEAGEVPPSLAPLIKITRALGVRLGTLM 66


>gi|170016383|ref|YP_001727302.1| transcriptional regulator [Leuconostoc citreum KM20]
 gi|169803240|gb|ACA81858.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
          Length = 258

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +NIR +  LTQ +   +   ++  +S  E G S   +  + I+A+T D PL +LL
Sbjct: 10 LQNIRTKQNLTQVDFAEKIFVSRQTVSNWERGISIPPVTALSIIANTFDVPLTQLL 65


>gi|169333644|ref|ZP_02860837.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259638|gb|EDS73604.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 126

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R + +++Q+ +      ++S I++ E+ K   +++N+ ++A   D  +  L+
Sbjct: 3  FSEKLKKLRIDNEMSQENLAELLNVSRSAIAKWESSKGMPDLENIKMIAPIFDVTIDSLI 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC
          27755]
 gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC
          27755]
          Length = 222

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              RKE  LTQK +  +       +S+ ETG+S  ++  +  L   L   + +LL
Sbjct: 11 IAECRKEKGLTQKALGEKLNVTDRAVSKWETGRSFPDVAILEDLCQELGISVSELL 66


>gi|160934569|ref|ZP_02081955.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753]
 gi|156866022|gb|EDO59394.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753]
          Length = 121

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 25/64 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  RK   +++ ++ +    A  +I+ +E      ++  +  L   LD  + +
Sbjct: 13 KAFGQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYELVTLLDVSVDQ 72

Query: 80 LLKP 83
             P
Sbjct: 73 FFFP 76


>gi|149187671|ref|ZP_01865968.1| transcriptional regulator, XRE family with cupin sensor protein
          [Vibrio shilonii AK1]
 gi|148838551|gb|EDL55491.1| transcriptional regulator, XRE family with cupin sensor protein
          [Vibrio shilonii AK1]
          Length = 182

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             F+ +R+ A L+Q+E+  R G    +IS++E+   + ++ ++  L   + + + +  
Sbjct: 6  GPRFKALRERAGLSQRELAKRAGVTNGFISQIESNAVSPSVASLSKLLSKIPSSMAEFF 64


>gi|146307658|ref|YP_001188123.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575859|gb|ABP85391.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp]
          Length = 185

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +RK  K+T  E+  R G +  ++S++E G S   + ++  ++  LD P
Sbjct: 17 LRKHKKVTLNELAERIGRSVGFLSQVERGLSRPTVADLTAISEALDVP 64


>gi|134297206|ref|YP_001120941.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134140363|gb|ABO56106.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia vietnamiensis G4]
          Length = 266

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+EAK T  E+      +  ++S++E   + I++ +++ +A+ L  PL  L+
Sbjct: 9  GQRIRRLRREAKKTLLEVATEAHLSVGFLSQVERNLTGISLSSLVNVANALKVPLGTLI 67


>gi|152986025|ref|YP_001346033.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961183|gb|ABR83208.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 184

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +RK   +T + + +    +  ++S++E G S   +D+++ ++  L  P
Sbjct: 15 VRELRKRKGMTLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVP 65


>gi|92114029|ref|YP_573957.1| XRE family transcriptional regulator [Chromohalobacter salexigens
          DSM 3043]
 gi|91797119|gb|ABE59258.1| transcriptional regulator, XRE family [Chromohalobacter
          salexigens DSM 3043]
          Length = 210

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                 E +      + IR   + T +++  RTG A+S +S++E  + +     +  L 
Sbjct: 15 SGRKAFVEPLRLGERLKEIRLSNRWTLEDVSQRTGLARSTLSKIENDQISPTFSAVQKLI 74

Query: 71 HTLDTPLWKLLKP 83
            L   L +LL P
Sbjct: 75 GGLGIDLPQLLTP 87


>gi|77919058|ref|YP_356873.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
 gi|77545141|gb|ABA88703.1| transcriptional regulator, XRE family [Pelobacter carbinolicus
          DSM 2380]
          Length = 188

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +     +  R    LT + + N +G + + IS +E G +  ++  ++ LA  L   +
Sbjct: 3  KTLIGKKLKTTRLGKGLTIQGLTNLSGVSANMISRIERGLTVPSVKILMKLASALGMSI 61


>gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53]
 gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53]
          Length = 239

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  R  R +  LTQ ++  +    ++ IS  ETG  T   D++  +AH L+  +  
Sbjct: 8  KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69]
 gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92]
 gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus E1410]
 gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1]
 gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69]
 gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92]
 gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2]
 gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus E1410]
          Length = 239

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  R  R +  LTQ ++  +    ++ IS  ETG  T   D++  +AH L+  +  
Sbjct: 8  KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11]
 gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus
          subsp. aureus COL]
 gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E]
 gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11]
 gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus
          subsp. aureus COL]
 gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E]
 gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp.
          aureus CGS00]
          Length = 239

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  R  R +  LTQ ++  +    ++ IS  ETG  T   D++  +AH L+  +  
Sbjct: 8  KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155]
 gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155]
          Length = 191

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +  +    TG +++ I ++E G+S+  I  +  +A   +  L   L
Sbjct: 8  LATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNFSLSTFL 67

Query: 82 KP 83
          +P
Sbjct: 68 EP 69


>gi|306824518|ref|ZP_07457864.1| probable transcriptional regulator [Streptococcus sp. oral taxon
          071 str. 73H25AP]
 gi|304433305|gb|EFM36275.1| probable transcriptional regulator [Streptococcus sp. oral taxon
          071 str. 73H25AP]
          Length = 116

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L     +  
Sbjct: 13 QKVKYFRTQKKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALQMTPEEFF 70


>gi|302521750|ref|ZP_07274092.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302430645|gb|EFL02461.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 276

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          D        F  + R +R     TQ+E+  R G + S +S +ETG+    
Sbjct: 8  DPARSPGEAFGEHLRRLRDGRGWTQEELAARMGISASHVSAVETGRRPPT 57


>gi|266625083|ref|ZP_06118018.1| putative transcriptional regulator [Clostridium hathewayi DSM
           13479]
 gi|288863021|gb|EFC95319.1| putative transcriptional regulator [Clostridium hathewayi DSM
           13479]
          Length = 151

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           P R        + +LRE     N  R IR E   TQ ++    G  +++  ++E G+S+I
Sbjct: 36  PGRAAKGGRNKEELLRE---MGNRLRQIRLEKNWTQDKMAECLGITKAFYGKIERGESSI 92

Query: 62  NIDNMIILAHTLDTPLWKLLK 82
            ++ + +L  T+D  L  L+ 
Sbjct: 93  ALEKLALLNETMDIDLNYLIT 113


>gi|260910939|ref|ZP_05917580.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260634930|gb|EEX52979.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 110

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 27/76 (35%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          KRD                   R  R    LTQ E+    G  +S I +LE+GKS I + 
Sbjct: 24 KRDTMEKRLKEEINAYYVGEAIRKARTAQHLTQDELGKLIGVQRSQICKLESGKSVITLP 83

Query: 65 NMIILAHTLDTPLWKL 80
           M  +   L      L
Sbjct: 84 TMSRVFQALGISTATL 99


>gi|271966178|ref|YP_003340374.1| hypothetical protein Sros_4808 [Streptosporangium roseum DSM
          43021]
 gi|270509353|gb|ACZ87631.1| hypothetical protein Sros_4808 [Streptosporangium roseum DSM
          43021]
          Length = 223

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RKE +L+++++  R G    ++S LE   +   +D +  LA  L+T + +LL
Sbjct: 11 LGRRVAWRRKELRLSREQLAGRAGIDPGYLSYLEETAAAPTLDTVRKLATALNTNVEELL 70


>gi|239627732|ref|ZP_04670763.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517878|gb|EEQ57744.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 94

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          LR R   +      RK+  +TQ E+  R G  +S IS LE+G    ++D +  +A +L  
Sbjct: 28 LRPRYEAIAQIIAARKQQNMTQAELARRVGTQKSNISRLESGNYNPSLDFLSKVAESLGK 87

Query: 76 PL 77
           L
Sbjct: 88 SL 89


>gi|167621125|ref|ZP_02389756.1| hypotethical transcriptional regulator [Burkholderia
          thailandensis Bt4]
          Length = 102

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R   +LTQ E+  R G + S++SE+E G     +D +   +     P   +
Sbjct: 1  MLYRALKLLRTYHQLTQVELAKRLGISNSYLSEIEKGDKAPGLDLLGKYSEVFKMPTSSI 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|81427908|ref|YP_394907.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78609549|emb|CAI54595.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 103

 Score = 48.1 bits (113), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
             R  RK+  LT +E+  ++G + S+IS +E G+   + I  +  +A  L   L    
Sbjct: 7  QMIREHRKQLGLTIEELAEKSGSSYSFISRIERGEVDNLKIKKLNDIAEALGIELIDFF 65


>gi|319937843|ref|ZP_08012245.1| DNA-binding protein [Coprobacillus sp. 29_1]
 gi|319807073|gb|EFW03689.1| DNA-binding protein [Coprobacillus sp. 29_1]
          Length = 194

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  +  R E+ L+Q+E+ ++    +  IS  E GK+  +I+++++L+      L  L+K
Sbjct: 5  SQIKKYRLESSLSQEELADKIFVTRQTISNWENGKNYPDINSIVLLSTLFGISLDILVK 63


>gi|294794332|ref|ZP_06759468.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 3_1_44]
 gi|294454662|gb|EFG23035.1| toxin-antitoxin system, antitoxin component, Xre family
          [Veillonella sp. 3_1_44]
          Length = 91

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 27/45 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R++  +TQ ++ +++G AQS+IS+LE+G        +  + + L 
Sbjct: 27 RRQLGMTQYQLADKSGLAQSYISDLESGSIDPRWSTIYRVVYGLG 71


>gi|226325033|ref|ZP_03800551.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758]
 gi|225206381|gb|EEG88735.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758]
          Length = 112

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +RKE ++TQK++ ++   +   +S+ E G S  N+  +I +A  L   + +LL+
Sbjct: 8  LAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADILGITVTELLQ 64


>gi|167737064|ref|ZP_02409838.1| putative DNA-binding protein [Burkholderia pseudomallei 14]
          Length = 158

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
             R IRK A L+Q E+  R   A+  ++ +E G+   + +  +  LA  L   +    
Sbjct: 14 ERLRTIRKRAGLSQDELAARASLARPNLASVEQGRRANLRLSTLSRLADVLGVDVVDFF 72



 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R  DE          R+I   N + +R EA L+Q+ +  +    ++++  LE   ++  +
Sbjct: 75  RSVDEQQPVGEDATARVI--ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMV 132

Query: 64  DNMIILAHTLDTPLWKLLKP 83
            ++  LA  L + +  LL+P
Sbjct: 133 VDLQDLADALGSQIPILLEP 152


>gi|139439104|ref|ZP_01772556.1| Hypothetical protein COLAER_01566 [Collinsella aerofaciens ATCC
          25986]
 gi|133775451|gb|EBA39271.1| Hypothetical protein COLAER_01566 [Collinsella aerofaciens ATCC
          25986]
          Length = 75

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R  R  A ++Q+++ N+ G + S I   E G     +D    +A  L      L+
Sbjct: 8  FGANLRAARARADMSQEQLANKAGLSASSIIGYENGSMVPGVDKAYAIAQALGCTPNDLM 67


>gi|28870261|ref|NP_792880.1| transcriptional regulator [Pseudomonas syringae pv. tomato str.
          DC3000]
 gi|28853508|gb|AAO56575.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|331016477|gb|EGH96533.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 212

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R +  L+   +   TG +++ ++++E+G+S  +I  +  +A  L   +   L
Sbjct: 32 VARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSIAAFL 91

Query: 82 K 82
          +
Sbjct: 92 E 92


>gi|119387592|ref|YP_918626.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119378167|gb|ABL72930.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 211

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK  +LT +E+   TG + S +S++E    +  +  +  +A  L   L  LL
Sbjct: 28 LGPRLKALRKGQQLTLQEVARLTGVSTSALSKIERNDLSPTLTTLQRIASGLQVELSALL 87


>gi|26989603|ref|NP_745028.1| XRE family transcriptional regulator [Pseudomonas putida KT2440]
 gi|148548020|ref|YP_001268122.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|167033897|ref|YP_001669128.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|325276264|ref|ZP_08142055.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|24984484|gb|AAN68492.1|AE016481_8 transcriptional regulator, putative [Pseudomonas putida KT2440]
 gi|148512078|gb|ABQ78938.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
 gi|166860385|gb|ABY98792.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
 gi|298682210|gb|ADI95276.1| XRE family transcriptional regulator [Pseudomonas putida]
 gi|313499097|gb|ADR60463.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
 gi|324098604|gb|EGB96659.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 181

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R+   L+Q+E+  R+G   S IS++E  + + ++ ++  L   +   L +  
Sbjct: 4  GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEFF 62


>gi|330821963|ref|YP_004350825.1| DNA-binding protein [Burkholderia gladioli BSR3]
 gi|327373958|gb|AEA65313.1| DNA-binding protein [Burkholderia gladioli BSR3]
          Length = 193

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               R +R+  K T  E     G ++ ++S++E G ++ +I ++  +AH L  
Sbjct: 17 LGGKIRALRQRLKRTLDETAGAAGISKPFLSQVERGLASPSITSLAGIAHALGV 70


>gi|311071093|ref|YP_003976016.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942]
 gi|310871610|gb|ADP35085.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942]
          Length = 67

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E   TQ +        +  I  +E GK    +   I +A  L+  L +L 
Sbjct: 3  NRVKMARIEKGWTQSQHAAHVSVTRQTIGLIEKGKYNPTLQLCIAIAKALNQTLDQLF 60


>gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 184

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             + R +RK   LT + +   TG +  W+S +E G++  +I ++  +A    
Sbjct: 5  VGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRDLEKIAALFG 57


>gi|256396383|ref|YP_003117947.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256362609|gb|ACU76106.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 189

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
              R +R E  ++   +       ++ +S LE G      I+ +  +A  L  P+  LL
Sbjct: 14 GARIRRLRLERGVSLSALARDAAVGKATLSGLEDGSRGNPTIETLYAIAGRLGVPIGALL 73


>gi|229069332|ref|ZP_04202622.1| Transcriptional regulator, Xre [Bacillus cereus F65185]
 gi|229078964|ref|ZP_04211516.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2]
 gi|228704378|gb|EEL56812.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2]
 gi|228713819|gb|EEL65704.1| Transcriptional regulator, Xre [Bacillus cereus F65185]
          Length = 404

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+  +  LL
Sbjct: 4  LGEKIKTLRKEKKLTQTELVG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|225573251|ref|ZP_03782006.1| hypothetical protein RUMHYD_01442 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039383|gb|EEG49629.1| hypothetical protein RUMHYD_01442 [Blautia hydrogenotrophica DSM
          10507]
          Length = 114

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N R + KLTQ E+      +  ++ +LE  ++  + D    +    +     ++
Sbjct: 8  FGIVLKNARMDKKLTQAELAEILDISLPYLKDLERFRNNPSYDVFEKVIRYFNLSADTVI 67

Query: 82 KP 83
           P
Sbjct: 68 YP 69


>gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM
          13280]
 gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM
          13280]
          Length = 217

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+   ++Q+++      ++  IS  ETGK+  +I +M  LA      +  L+
Sbjct: 7  GTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKTLPDIQSMAYLAEVFGVTVDDLV 65


>gi|206970675|ref|ZP_03231627.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|229178189|ref|ZP_04305560.1| Transcriptional regulator, Xre [Bacillus cereus 172560W]
 gi|206734311|gb|EDZ51481.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|228605319|gb|EEK62769.1| Transcriptional regulator, Xre [Bacillus cereus 172560W]
          Length = 404

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ E+   +   +S +S++E GK+T ++  +  +A  L+  +  LL
Sbjct: 4  LGEKIKTLRKEKKLTQTELVG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402]
 gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7]
 gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402]
 gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7]
          Length = 206

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
          +     + +RKE  LTQ+++ N  G  +S I++ E  +   +  D +  L+   D P
Sbjct: 1  MTGERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVP 57


>gi|167749383|ref|ZP_02421510.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702]
 gi|167657664|gb|EDS01794.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702]
 gi|291556256|emb|CBL33373.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 108

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RKE  L Q E+         ++S +ETG+S  +++ ++ L   L+T     L
Sbjct: 8  LGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNTTPDYFL 67


>gi|160945036|ref|ZP_02092262.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium
          prausnitzii M21/2]
 gi|158442767|gb|EDP19772.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium
          prausnitzii M21/2]
 gi|295104555|emb|CBL02099.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 231

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  +TQK+     G +Q+ +S  E G     +D ++ +A   +     LL
Sbjct: 3  FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62


>gi|91779177|ref|YP_554385.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91691837|gb|ABE35035.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 302

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNF----RNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
          P R  DE  + +     R    N+     R+ R    ++Q ++  R G +Q  IS +E+G
Sbjct: 8  PSRLADERAM-NPENPARNTTSNDLGVLLRHWRDLRAVSQLDLSFRAGVSQRHISFIESG 66

Query: 58 KSTINIDNMIILAHTLDTPLWK 79
          +S  +   ++ +A TLD PL +
Sbjct: 67 RSVPSRQMLLDIAQTLDIPLRE 88


>gi|73663641|ref|YP_302422.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72496156|dbj|BAE19477.1| putative transcriptional regulator [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 117

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +  R++   +Q E+      ++  IS+ E  K   +ID +I ++   D  L +L+K
Sbjct: 4  GSKTKEKREQKHWSQDELAEILNISRQSISKWELNKVYPSIDMLIKMSDLFDISLDELIK 63


>gi|42523926|ref|NP_969306.1| hypothetical protein Bd2497 [Bdellovibrio bacteriovorus HD100]
 gi|39576133|emb|CAE80299.1| conserved hypothetical protein with HTH domain [Bdellovibrio
          bacteriovorus HD100]
          Length = 92

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLD 74
          +R++ +  +  +  R  A L+Q+++ ++ G++   +IS  E G S   I+ +  L     
Sbjct: 1  MRQKNMLADFLKQKRVSAGLSQRDVADKLGYSTPQFISNWERGVSHPPINALKRLGELYK 60

Query: 75 TPLWKLLK 82
               L +
Sbjct: 61 VSADDLFE 68


>gi|16804446|ref|NP_465931.1| hypothetical protein lmo2408 [Listeria monocytogenes EGD-e]
 gi|224503444|ref|ZP_03671751.1| hypothetical protein LmonFR_13202 [Listeria monocytogenes FSL
          R2-561]
 gi|254831169|ref|ZP_05235824.1| hypothetical protein Lmon1_07403 [Listeria monocytogenes 10403S]
 gi|255018503|ref|ZP_05290629.1| hypothetical protein LmonF_13781 [Listeria monocytogenes FSL
          F2-515]
 gi|16411896|emb|CAD00486.1| lmo2408 [Listeria monocytogenes EGD-e]
          Length = 67

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  N  + IR++  +TQ E+ +    ++  I  +E GK   +++  + +A   D P+ +
Sbjct: 1  MVVTNIVKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEE 60

Query: 80 LL 81
          + 
Sbjct: 61 IF 62


>gi|119387639|ref|YP_918673.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119378214|gb|ABL72977.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 184

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R++RK   +T  E+    G +  W+S++E G++T ++ ++  ++  L   +    
Sbjct: 5  VGEDIRSLRKSRGMTLLELAGDVGRSVGWLSQVERGQTTPSVHDLGQISDRLGVNISFFF 64

Query: 82 K 82
          +
Sbjct: 65 R 65


>gi|326384503|ref|ZP_08206183.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
 gi|326196848|gb|EGD54042.1| helix-turn-helix domain-containing protein [Gordonia
          neofelifaecis NRRL B-59395]
          Length = 106

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R +R     T +E+      +  ++SE+E G+   + + +  +   LD P+ 
Sbjct: 6  REAIGDELRRVRNGQGRTLREVSTDARVSLGYLSEVERGQKEASSELLASICEALDVPIG 65

Query: 79 KLL 81
           +L
Sbjct: 66 DVL 68


>gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
          Length = 113

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+ KLTQ +I  +   +Q   +  E G      +N+I +A  L+  +  L+
Sbjct: 3  FGERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKKPTQENLIKIAQILNVTVDYLV 62


>gi|317497673|ref|ZP_07955988.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316895007|gb|EFV17174.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 105

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  + ++IR++  LTQ ++    G    +IS +E  ++ +++  +   A      L  L+
Sbjct: 6  YGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDSLV 65


>gi|258406621|ref|YP_003199362.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798848|gb|ACV69784.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 117

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R  R  + LTQ E+  +TG AQS +S +E GK  I  D    LA  L+
Sbjct: 62  LRAARNRSGLTQVELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLN 110


>gi|219855694|ref|YP_002472816.1| hypothetical protein CKR_2351 [Clostridium kluyveri NBRC 12016]
 gi|219569418|dbj|BAH07402.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 66

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + IR +  +TQ+++  + G  +  I+ +E  K    ++    L+ TL   + +L
Sbjct: 3  LLKNKIKTIRNKLGITQEQLAKKCGVVRQTINCIENDKYDPTLELAFKLSKTLKVKVDEL 62

Query: 81 L 81
           
Sbjct: 63 F 63


>gi|297193564|ref|ZP_06910962.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197718161|gb|EDY62069.1| DNA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 151

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 15 LGEYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 73


>gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp.
          SPB74]
 gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp.
          SPB74]
          Length = 187

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE  +T   +   TG + S +S LE+G     ++ ++ LA      L +L+
Sbjct: 4  VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 63


>gi|167768389|ref|ZP_02440442.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1]
 gi|167709913|gb|EDS20492.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1]
 gi|291560359|emb|CBL39159.1| Predicted transcriptional regulators [butyrate-producing
          bacterium SSC/2]
          Length = 105

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  + ++IR++  LTQ ++    G    +IS +E  ++ +++  +   A      L  L+
Sbjct: 6  YGTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDSLV 65


>gi|196033092|ref|ZP_03100505.1| conserved domain protein [Bacillus cereus W]
 gi|217962470|ref|YP_002341042.1| hypothetical protein BCAH187_A5148 [Bacillus cereus AH187]
 gi|222098451|ref|YP_002532509.1| transcriptional regulator [Bacillus cereus Q1]
 gi|229141721|ref|ZP_04270251.1| Transcriptional regulator, Cro/CI [Bacillus cereus BDRD-ST26]
 gi|229199148|ref|ZP_04325831.1| Transcriptional regulator, Cro/CI [Bacillus cereus m1293]
 gi|195994521|gb|EDX58476.1| conserved domain protein [Bacillus cereus W]
 gi|217067696|gb|ACJ81946.1| conserved domain protein [Bacillus cereus AH187]
 gi|221242510|gb|ACM15220.1| transcriptional regulator [Bacillus cereus Q1]
 gi|228584419|gb|EEK42554.1| Transcriptional regulator, Cro/CI [Bacillus cereus m1293]
 gi|228641789|gb|EEK98090.1| Transcriptional regulator, Cro/CI [Bacillus cereus BDRD-ST26]
          Length = 75

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  NN   +R E + +Q ++ N+ G ++  I+ +E  +   ++     +AH L     ++
Sbjct: 6  ILQNNLVVLRAEKRWSQTDLANKAGVSRQTIASIEANRYNPSLILAFEIAHILGKEFHEV 65

Query: 81 LK 82
           +
Sbjct: 66 FQ 67


>gi|27497171|gb|AAN64201.1| Orf9 [Photorhabdus luminescens]
          Length = 130

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N  +IRK  +LTQ ++ +        +   E GK+    D +I LA  L+  +  LL
Sbjct: 16 FGKNLSSIRKSRQLTQLKLADLLDIQPRMVGRWEQGKAKPQFDYIIKLAQILEVSIDHLL 75


>gi|315147042|gb|EFT91058.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
          Length = 257

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R     TQ++I  +       IS+ ETG+S  +IDN+++L+   +  + +L++
Sbjct: 7  LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63


>gi|299132768|ref|ZP_07025963.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298592905|gb|EFI53105.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 117

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F       RK   LTQ  +  R G +++ I+ +E+G+  + + ++  LA  L+     
Sbjct: 8  KAFGQAVATRRKGLNLTQATLAARVGISRASIANIESGRQNVLLHHVYRLASALEFSKVS 67

Query: 80 LLKP 83
           L P
Sbjct: 68 DLLP 71


>gi|296386710|ref|ZP_06876209.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
          Length = 179

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + + ++TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLETLADKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60


>gi|294786274|ref|ZP_06751528.1| DNA-binding protein [Parascardovia denticolens F0305]
 gi|315225808|ref|ZP_07867596.1| transcriptional regulator [Parascardovia denticolens DSM 10105]
 gi|294485107|gb|EFG32741.1| DNA-binding protein [Parascardovia denticolens F0305]
 gi|315119940|gb|EFT83072.1| transcriptional regulator [Parascardovia denticolens DSM 10105]
          Length = 115

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 36/72 (50%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           SD  LR+R    +  R +R   +L+Q+++       +S++  +E G++ +++D +  + 
Sbjct: 2  DSDDKLRKRRALGDALRRLRANRRLSQEDLALEAAVDRSYLGRIERGEAAMSVDKIWQIC 61

Query: 71 HTLDTPLWKLLK 82
            L+    +L  
Sbjct: 62 QALEVSPVELFT 73


>gi|256962367|ref|ZP_05566538.1| predicted protein [Enterococcus faecalis Merz96]
 gi|256952863|gb|EEU69495.1| predicted protein [Enterococcus faecalis Merz96]
          Length = 308

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+I  N  +  R+   +TQ+ +  +      +IS+ E GK       +  +   L+  + 
Sbjct: 4  RLIIGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISID 63

Query: 79 KLL 81
           LL
Sbjct: 64 DLL 66


>gi|300861593|ref|ZP_07107677.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|295114549|emb|CBL33186.1| Predicted transcriptional regulators [Enterococcus sp. 7L76]
 gi|300849054|gb|EFK76807.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11]
 gi|315144082|gb|EFT88098.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
          Length = 257

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R     TQ++I  +       IS+ ETG+S  +IDN+++L+   +  + +L++
Sbjct: 7  LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63


>gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 198

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + D++ R         +++R+   +T  E+ ++TG + S +S LE G     ++ ++ LA
Sbjct: 1  MDDSLDRTLGAVGARLKHLRQRRTITLVELADQTGISISTLSRLEAGLRRPTLEQLLPLA 60

Query: 71 HTLDTPLWKLL 81
                L +L+
Sbjct: 61 RVHGVTLDELV 71


>gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM
          13279]
 gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM
          13279]
          Length = 226

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R R E       ++         R +R    ++Q ++  R   ++  IS  E GK+  
Sbjct: 4  PVRGRAEKDGGRVGMK----IGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKTYP 59

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          ++ ++++L+      +  L+K
Sbjct: 60 DVQSLLLLSEIFGASVDSLIK 80


>gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum
           alkenivorans AK-01]
          Length = 433

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                + +R +  L+Q ++    G   S IS++E      +I  ++ +A  L+     L 
Sbjct: 254 LGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVENNSIYPSIPGLLKMAEILNVSPGYLF 313


>gi|160915810|ref|ZP_02078018.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991]
 gi|158432286|gb|EDP10575.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991]
          Length = 171

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N RN+RK   L+Q+E+  +    +  +S+ E   S  +   ++ LA  LDT +  L
Sbjct: 1  MLNENIRNLRKAKGLSQEELAIKLNVVRQTVSKWEKSLSVPDSSMLVSLAEELDTSVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|152994692|ref|YP_001339527.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835616|gb|ABR69592.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1]
          Length = 95

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F+N   ++R +A LTQ+++  R    +S IS LE G +  +   ++  AH     L
Sbjct: 29 FINQLLSMRVQAGLTQEQLAKRMHTQKSNISRLERGNANPSWTTLLKYAHACGFEL 84


>gi|118578914|ref|YP_900164.1| XRE family transcriptional regulator [Pelobacter propionicus DSM
          2379]
 gi|118501624|gb|ABK98106.1| transcriptional regulator, MerR family [Pelobacter propionicus
          DSM 2379]
          Length = 192

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +R    +    IR+   LT++++  R   +++ I+ LE G+   ++  +I +  TL  
Sbjct: 1  MTDRNRIGDKITTIRESLGLTREQLAERCDCSETVIAGLEQGELAPSLTPLIKITRTLGV 60

Query: 76 PLWKLL 81
           L  LL
Sbjct: 61 RLGTLL 66


>gi|78060967|ref|YP_370875.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968852|gb|ABB10231.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia sp. 383]
          Length = 193

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ ++ ++  +AH L  
Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 70


>gi|87122889|ref|ZP_01078757.1| putative transcriptional regulator, [Marinomonas sp. MED121]
 gi|86161840|gb|EAQ63137.1| putative transcriptional regulator, [Marinomonas sp. MED121]
          Length = 203

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 6  RDEPHLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          R     + A   +  +         + IR     T +E+  RTG A+S +S++E  + + 
Sbjct: 4  RPSLETAKAAEPDNFVEPLELGKRVKEIRLSKGWTLEEVSKRTGIARSTLSKIENDQVSP 63

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +   +  L   L   L +L 
Sbjct: 64 SFTIVQKLIQGLGMDLPQLF 83


>gi|75758833|ref|ZP_00738946.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74493674|gb|EAO56777.1| Transcriptional regulator, MerR family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 130

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R    L  KE+ +  G A S IS  E  +   + + +  ++   +    +LL
Sbjct: 6  FGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFETLQKISIYFNVSTDRLL 65


>gi|329847523|ref|ZP_08262551.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
 gi|328842586|gb|EGF92155.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
          Length = 469

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 17 RERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           ER +F     + +R +  L+Q ++    G + S+++ LE  +  +    ++ LA T D 
Sbjct: 4  VERKLFLGGRLKRLRYDLNLSQTQMAEDLGVSPSYLNHLERNQRPVTAQVLLKLAATYDL 63

Query: 76 PL 77
           L
Sbjct: 64 DL 65


>gi|313635253|gb|EFS01552.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          seeligeri FSL N1-067]
 gi|313639938|gb|EFS04624.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          seeligeri FSL S4-171]
          Length = 111

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  R    +  IS  E G    N D +  LA   +  L  
Sbjct: 5  KFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|309776993|ref|ZP_07671962.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915203|gb|EFP60974.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
          Length = 99

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             +TQ E+  R G +Q  IS+  TGKS  +ID +  +   LD 
Sbjct: 14 MKNMTQSELGERLGLSQKAISKYVTGKSLPSIDTLEKICSILDV 57


>gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4]
 gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4]
          Length = 328

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+   +Q+E+ ++ G ++  +S+ E  +S  +++ +I L+         
Sbjct: 1  MILADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDL 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08]
 gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07]
 gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08]
 gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07]
          Length = 258

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +RKE  ++Q+ +  + G  +  IS+ E  +     + ++ L++  +     
Sbjct: 1  MSLGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQGFPETEKLLQLSNIFEVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|288905613|ref|YP_003430835.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|288732339|emb|CBI13909.1| putative transcriptional regulator [Streptococcus gallolyticus
          UCN34]
          Length = 147

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N+R + +LTQ+E+  R    +  IS  ETG++  N D + +L+   +  +  LL
Sbjct: 7  LKNLRDKYQLTQEELAARVLVTRQAISRWETGETQPNTDTLKLLSKEFNVSINTLL 62


>gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829]
 gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829]
 gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829]
          Length = 328

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+   +Q+E+ ++ G ++  +S+ E  +S  +++ +I L+         
Sbjct: 1  MILADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDL 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|217977224|ref|YP_002361371.1| transcriptional regulator, XRE family [Methylocella silvestris BL2]
 gi|217502600|gb|ACK50009.1| transcriptional regulator, XRE family [Methylocella silvestris BL2]
          Length = 137

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK   +TQ ++       Q ++S+LE G+   + + +  +A  L+     L+
Sbjct: 73  LKALRKWRGMTQIDLAILADLGQGYLSDLEAGRRRGSRETLHKIAEKLNIEPAWLI 128


>gi|160934847|ref|ZP_02082233.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753]
 gi|156866300|gb|EDO59672.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753]
          Length = 96

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +N+R++  LTQ ++ NR   +++ IS  E    T + D +I LA         LL
Sbjct: 5  FGYRLKNLRQQHHLTQTQVANRLNLSKTSISGYENNVKTPSQDVLIKLAGLYRVSTDYLL 64


>gi|85859538|ref|YP_461740.1| Cro/CI family transcriptional regulator [Syntrophus aciditrophicus
           SB]
 gi|85722629|gb|ABC77572.1| transcriptional regulator, Cro/CI family [Syntrophus aciditrophicus
           SB]
          Length = 128

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLD 74
           L+E+    +  R  R+    TQ+++    G   +  IS +E GK  I+ +    LA   +
Sbjct: 56  LKEKTTPGDTTRIYREAKGWTQEKLGELLGDIPRQHISNMEHGKRPISSNTARKLAKLFN 115

Query: 75  TPLWKLL 81
            P+ + +
Sbjct: 116 VPMDRFI 122


>gi|78187662|ref|YP_375705.1| XRE family transcriptional regulator [Chlorobium luteolum DSM
          273]
 gi|78167564|gb|ABB24662.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM
          273]
          Length = 135

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 30/64 (46%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L+   +R +  F     ++ +   ++Q+++  + G  +S++S + +G +   +  M+   
Sbjct: 16 LTKKYVRRQGEFAVRLHDLMERGGMSQRQLAEKLGKKESYVSRVLSGSANPTLKTMVEFE 75

Query: 71 HTLD 74
            L 
Sbjct: 76 VALG 79


>gi|115359612|ref|YP_776750.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|170701460|ref|ZP_02892415.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|171320762|ref|ZP_02909771.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|172064423|ref|YP_001812074.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|115284900|gb|ABI90416.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia ambifaria AMMD]
 gi|170133622|gb|EDT01995.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|171093979|gb|EDT39090.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171996940|gb|ACB67858.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 192

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ ++ ++  +A  L  
Sbjct: 16 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 69


>gi|332362044|gb|EGJ39846.1| repressor protein [Streptococcus sanguinis SK49]
          Length = 75

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNR-TGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQ+ +  +     +S  S++E+G   I+ID++I LA   +  L  L+
Sbjct: 3  KRIRDLREDTDLTQEYVAKKILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLV 61


>gi|300855490|ref|YP_003780474.1| hypothetical protein CLJU_c23140 [Clostridium ljungdahlii DSM
          13528]
 gi|300435605|gb|ADK15372.1| conserved hypothetical protein with a HTH motif [Clostridium
          ljungdahlii DSM 13528]
          Length = 184

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +I     +NIR    L+  ++   TG ++  + ++E G S   +  +  ++  L   
Sbjct: 6  LIIGTKLKNIRLRRNLSLDDVSKLTGVSKGMLGQIERGLSNPTVSTLWKISTGLKVS 62


>gi|298717602|ref|YP_003730244.1| HTH-type transcriptional regulator [Pantoea vagans C9-1]
 gi|298361791|gb|ADI78572.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
          vagans C9-1]
          Length = 200

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ RK  KL+  E+  R G ++  + E+E G +  +I  +  +A  L   +  ++
Sbjct: 25 RIKSWRKSQKLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKIAAALGVSVADIV 81


>gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 302

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RK++ +TQ+++ ++ G     +S+ E G S  + D +  +A   D  +  L
Sbjct: 4  VFSKQLQKLRKQSGITQEQLADKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNL 62


>gi|325678257|ref|ZP_08157885.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324110020|gb|EGC04208.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 254

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R +A L+Q+++ N+    +  +S  E G++  + D + +L+   D  +  +L
Sbjct: 7  IRELRTKAGLSQEDLANKVYVTRQAVSRWEKGETVPSTDTLKLLSALFDVSINTIL 62


>gi|240851124|ref|YP_002972526.1| transcriptional regulator [Bartonella grahamii as4aup]
 gi|240268247|gb|ACS51835.1| transcriptional regulator [Bartonella grahamii as4aup]
          Length = 123

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     R+ R    L+QK + +  G +   I + E G + +++  ++ +A  L+ P+
Sbjct: 12 LIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPM 68


>gi|258513519|ref|YP_003189741.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257777224|gb|ACV61118.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 141

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 IR   K TQKE+    G ++S+I  +E G +  +++ +I +A      L  L+
Sbjct: 11 LGKRVAEIR--GKNTQKELAKAIGVSRSYIGNIEQGITVPSLEVLINIAQQYHVSLDWLV 68


>gi|228962123|ref|ZP_04123603.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228797559|gb|EEM44692.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 66

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R IRKE  LTQ ++ N     ++ IS+ E+G  + ++  +++ A+   T +   L 
Sbjct: 8  LREIRKEKGLTQNQLANLLDLDKTSISKYESGIHSPSLRVLVLYANIFGTQIENFLT 64


>gi|298346441|ref|YP_003719128.1| hypothetical protein HMPREF0573_11315 [Mobiluncus curtisii ATCC
          43063]
 gi|304389820|ref|ZP_07371779.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|298236502|gb|ADI67634.1| hypothetical protein HMPREF0573_11315 [Mobiluncus curtisii ATCC
          43063]
 gi|304326996|gb|EFL94235.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 326

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R    LTQ E+   +G  QS IS  E  K  I+      LA  +  P   L+
Sbjct: 17 LRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVPAHTLM 72


>gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 143

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + +R    LTQKE+  ++G   + I   E G  + + + +  ++  LD  +  
Sbjct: 1  MISGEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISA 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|225181085|ref|ZP_03734532.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
          AHT 1]
 gi|225168282|gb|EEG77086.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
          AHT 1]
          Length = 64

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  +++RK+  L Q+++  + G  +  I+ +E  K    ++  + LA  L+TP+  + +
Sbjct: 3  NKIKDLRKQKNLRQEDLALKLGVTRQTINAVENNKYNPTLELAMKLAKLLETPVEDIFQ 61


>gi|225405601|ref|ZP_03760790.1| hypothetical protein CLOSTASPAR_04822 [Clostridium asparagiforme
          DSM 15981]
 gi|225042865|gb|EEG53111.1| hypothetical protein CLOSTASPAR_04822 [Clostridium asparagiforme
          DSM 15981]
          Length = 70

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++++  N  +  R + KL+Q ++    G +++ IS +ETG+        +IL   L+   
Sbjct: 3  DKLVLKNRLKEARSQQKLSQSQLAEMVGVSRNTISSIETGQFNPTAKLALILCIALERKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|160914768|ref|ZP_02076982.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991]
 gi|158433308|gb|EDP11597.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991]
          Length = 69

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 23/58 (39%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R E  ++Q+++    G  +  I  +E G    ++   + +   L+  L  L 
Sbjct: 4  KRIKIARLECDMSQEDLAKAVGATRQTIGLIEAGNYNPSLKLCLAICKALNKTLDDLF 61


>gi|85373549|ref|YP_457611.1| hypothetical protein ELI_03610 [Erythrobacter litoralis HTCC2594]
 gi|84786632|gb|ABC62814.1| hypothetical protein ELI_03610 [Erythrobacter litoralis HTCC2594]
          Length = 190

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R+IRK+  LT  ++            I  LETG   +++  M  +A  L+     L+
Sbjct: 3  NRIRDIRKDKGLTLADLAEACEPPTTAQTIGRLETGMRNLSLKWMERIAAALEVDPEMLV 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|83955982|ref|ZP_00964493.1| transcriptional regulator, XRE family protein [Sulfitobacter sp.
          NAS-14.1]
 gi|83839746|gb|EAP78924.1| transcriptional regulator, XRE family protein [Sulfitobacter sp.
          NAS-14.1]
          Length = 94

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R E  +T +E+  R G ++  +S +E G  T+++  +  +A  L  PL++
Sbjct: 5  IRAARLERNMTAQELAERAGVSRPLLSRVEKGDMTVSLGAVFEIATILGVPLFE 58


>gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
          Length = 204

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  + + +R   +L+Q ++  +   +   IS  E  ++  +I+ +I ++  LD  L +
Sbjct: 1  MTFSKSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDE 60

Query: 80 LLK 82
          L+ 
Sbjct: 61 LIT 63


>gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
 gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
          Length = 71

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N  + +RK+++L+Q+ + ++ G  ++ IS  ETG S I+++N   +A      + 
Sbjct: 2  RKQTQNRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTID 61

Query: 79 KLL 81
           LL
Sbjct: 62 YLL 64


>gi|288919540|ref|ZP_06413870.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288349046|gb|EFC83293.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 282

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDN 65
          D P +SDA+   R      F+  R+    TQ +I    G  QS +S++  G+  + +++ 
Sbjct: 17 DRPEMSDAL--ARRDIGAAFKIYRQWTGATQTQIAAVCGLPQSHVSDIMNGRRQVTSLEI 74

Query: 66 MIILAHTLDTP 76
             +A  +  P
Sbjct: 75 FERIADGIGIP 85


>gi|312196273|ref|YP_004016334.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311227609|gb|ADP80464.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 203

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    LT   + + +G +++ IS++E  ++      +  L+  L   L +L+
Sbjct: 9  LAATVRSARAARGLTVAGLADASGVSRAMISKVERAEAQPTAALLAKLSGALGLTLSELI 68


>gi|257874773|ref|ZP_05654426.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257808939|gb|EEV37759.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 112

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R +   TQ+EI  R G  +   +  E GK   +   +  LA        +L
Sbjct: 1  MFPCVIKELRLKKNFTQQEIAERIGITRPAYTAYELGKREPDFSTLQALADLFGVSTDQL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          griseoflavus Tu4000]
 gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          griseoflavus Tu4000]
          Length = 509

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1]
 gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1]
          Length = 388

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +  R    +T  E+ ++ G  +  +S+ E GK+  +++++  L + L  P
Sbjct: 13 RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTPPSLESIFKLTNVLQFP 65


>gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA]
 gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA]
 gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 147

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +    IRKE  LTQ+++  +    +  +S  E G++T  ID   ++A T D P+  
Sbjct: 1  MAIGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVAL 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|239817496|ref|YP_002946406.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804073|gb|ACS21140.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 173

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           A+++  E+   +G + S +S +E G  + +++ +  LA+ L  P  +  
Sbjct: 2  AAQVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPTSRFF 51


>gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus
          barophilus MP]
 gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus
          barophilus MP]
          Length = 65

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+   LTQ+E+    G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVKIEDIF 60


>gi|189466564|ref|ZP_03015349.1| hypothetical protein BACINT_02939 [Bacteroides intestinalis DSM
          17393]
 gi|189434828|gb|EDV03813.1| hypothetical protein BACINT_02939 [Bacteroides intestinalis DSM
          17393]
          Length = 101

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + RK A+LTQ E+  R G  + +IS +E G +   +  +  +A  + 
Sbjct: 42 AQILLDARKNARLTQAELAKRIGADKGYISRIERGLTVPTVSTLYRIAAAMG 93


>gi|163790416|ref|ZP_02184847.1| putative transcriptional regulator [Carnobacterium sp. AT7]
 gi|159874320|gb|EDP68393.1| putative transcriptional regulator [Carnobacterium sp. AT7]
          Length = 65

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +  ++Q+++ +     +  IS +E G     I+  I +    +  L  L 
Sbjct: 6  RLKVARTKKDMSQQQLADAVNVTRQTISAIERGDYNPTINLCIEICKEFNLTLNDLF 62


>gi|160946894|ref|ZP_02094097.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270]
 gi|158447278|gb|EDP24273.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270]
          Length = 63

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK+  +TQ+E+ N    ++  ++ LE G+   +I     +A      + ++ 
Sbjct: 3  NKLEQIRKDRGITQEELANILEVSRQTVNSLENGRYNPSIVLAFKIAKFFGLQIEEIF 60


>gi|150005928|ref|YP_001300672.1| hypothetical protein BVU_3426 [Bacteroides vulgatus ATCC 8482]
 gi|149934352|gb|ABR41050.1| hypothetical protein BVU_3426 [Bacteroides vulgatus ATCC 8482]
          Length = 165

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17  RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           ++R       R IR +  +  +++   +G   + +  +E GK ++ +D +  +A  L  
Sbjct: 100 KDRARIGERIRQIRMDRGMEARDLARLSGIDAANLCRIENGKYSVGLDILSKIAAALGK 158


>gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104]
 gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104]
          Length = 194

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             N R  R+   L Q  +    G  Q  I+++E G   + +    ++A TL   L  +
Sbjct: 7  VGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGTRAVKLAEAAVIARTLGVELDDI 65


>gi|223933601|ref|ZP_03625581.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|302024367|ref|ZP_07249578.1| DNA-binding protein [Streptococcus suis 05HAS68]
 gi|330833364|ref|YP_004402189.1| XRE family transcriptional regulator [Streptococcus suis ST3]
 gi|223897727|gb|EEF64108.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|329307587|gb|AEB82003.1| transcriptional regulator, XRE family [Streptococcus suis ST3]
          Length = 62

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++ R    ++Q ++    G ++  ++ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLCINLAKALQTDLNSLF 59


>gi|330469565|ref|YP_004407308.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328812536|gb|AEB46708.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 266

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +      R  R+  +L+Q E+  R   +   +S +ETG+S  + + ++ LA  LD PL +
Sbjct: 8  LSVGPALRRWREARRLSQLEMAARADISTRHLSFVETGRSRPSPEMVLRLAEHLDLPLRE 67


>gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family
          [Rhizobium etli CNPAF512]
          Length = 189

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|299530377|ref|ZP_07043800.1| transcriptional regulator, XRE family protein [Comamonas
          testosteroni S44]
 gi|298721602|gb|EFI62536.1| transcriptional regulator, XRE family protein [Comamonas
          testosteroni S44]
          Length = 291

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H +         F ++ R+ R+  +L+Q+ +      +   +S +ETG++  + + ++ L
Sbjct: 23 HAAHKPPGALAPFGDHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRL 82

Query: 70 AHTLDTPLWK 79
          A  L  PL +
Sbjct: 83 AERLSVPLRE 92


>gi|291519992|emb|CBK75213.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 157

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 17  RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R+R+I  N    + KE  +TQK++   TG  +S ISE +       ID +++++  L   
Sbjct: 53  RDRIIMNNQIFKVLKEKGITQKQLSKMTGIPESTISEWKNKGKVPGIDKILLISEALGVS 112

Query: 77  LWKLLK 82
              LLK
Sbjct: 113 PNTLLK 118


>gi|288870687|ref|ZP_06114960.2| putative, transcriptional regulator [Clostridium hathewayi DSM
          13479]
 gi|288866263|gb|EFC98561.1| putative, transcriptional regulator [Clostridium hathewayi DSM
          13479]
          Length = 122

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ R++  LT+KE+  +   +  +I+ +E    T ++         LD  + +  
Sbjct: 16 FGQAIKSTREKKGLTRKELAAQIRISPRYIASIENSGQTPSLQVFYRFVTCLDMSVDQFF 75

Query: 82 KP 83
           P
Sbjct: 76 FP 77


>gi|229070989|ref|ZP_04204216.1| transcriptional regulator, XRE [Bacillus cereus F65185]
 gi|228712171|gb|EEL64119.1| transcriptional regulator, XRE [Bacillus cereus F65185]
          Length = 108

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+      ++S I   E  +   + + +I +A   +     
Sbjct: 2  KTFGNIIRDLRKQKGITQKELALSLKLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|227485924|ref|ZP_03916240.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227236157|gb|EEI86172.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 207

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           N + +R+E  LT +E     G  +S IS +E G   +    ++ + +  + 
Sbjct: 3  ENIKKLRQELGLTMEEFGKNLGVTRSAISNIENGYRNLTEQMILAICNVYNV 54


>gi|269797322|ref|YP_003311222.1| XRE family transcriptional regulator [Veillonella parvula DSM
          2008]
 gi|269093951|gb|ACZ23942.1| transcriptional regulator, XRE family [Veillonella parvula DSM
          2008]
          Length = 290

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  RK++ L+Q ++      ++  I++ E+G    +I N+  L+   +  + +LL
Sbjct: 3  FNEKLREYRKQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDELL 62


>gi|224583902|ref|YP_002637700.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi C strain RKS4594]
 gi|224468429|gb|ACN46259.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Paratyphi C strain RKS4594]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|168241154|ref|ZP_02666086.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
 gi|194450448|ref|YP_002045645.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194408752|gb|ACF68971.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|205339362|gb|EDZ26126.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL486]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|218960438|ref|YP_001740213.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729095|emb|CAO80006.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas
          acidaminovorans]
          Length = 356

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK   ++ KE+  + G   + IS  E GK  + +  ++ ++  +  PL  L+
Sbjct: 3  VGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEYLV 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|163787647|ref|ZP_02182094.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium
          ALC-1]
 gi|159877535|gb|EDP71592.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium
          ALC-1]
          Length = 363

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++ F      IRK   LTQ E+  +       I  +E+G        + I++  L    +
Sbjct: 3  KLDFGKELIKIRKARGLTQAEVAEKCNVTTRTIQRIESGAVKPRSSTIKIISEFLGVNFF 62

Query: 79 K 79
          +
Sbjct: 63 E 63


>gi|163816403|ref|ZP_02207769.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC
          27759]
 gi|158448400|gb|EDP25395.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC
          27759]
          Length = 213

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RN R  + +TQKE+ ++ G  +S I   E G    +   ++ +A+ L    + L  P
Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70


>gi|62180172|ref|YP_216589.1| putative oxidoreductase [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62127805|gb|AAX65508.1| putative oxidoreductase/putative repressor [Salmonella enterica
          subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714645|gb|EFZ06216.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|16764949|ref|NP_460564.1| repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|167992775|ref|ZP_02573871.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16420129|gb|AAL20523.1| putative oxidoreductase [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|205329040|gb|EDZ15804.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246798|emb|CBG24612.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. D23580]
 gi|267993529|gb|ACY88414.1| putative repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|301158133|emb|CBW17630.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. SL1344]
 gi|312912593|dbj|BAJ36567.1| putative repressor protein [Salmonella enterica subsp. enterica
          serovar Typhimurium str. T000240]
 gi|321224229|gb|EFX49292.1| Transcriptional regulator yidN, Cro/CI family [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          TN061786]
 gi|323129874|gb|ADX17304.1| putative repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
 gi|332988492|gb|AEF07475.1| putative repressor [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|16799238|ref|NP_469506.1| hypothetical protein lin0161 [Listeria innocua Clip11262]
 gi|16412580|emb|CAC95394.1| lin0161 [Listeria innocua Clip11262]
          Length = 117

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  +    +  IS  E G    N D +  LA   +  L  
Sbjct: 11 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 70

Query: 80 LL 81
            
Sbjct: 71 FF 72


>gi|325972297|ref|YP_004248488.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324027535|gb|ADY14294.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 111

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + +RK++ L QK I +  G  QS I+  E G   +    +  LA     P  K+L
Sbjct: 9  GNRLKELRKQSGLMQKHIADYLGVDQSLIARFENGDRAMTSATLEKLAMLYCCPASKIL 67


>gi|304403822|ref|ZP_07385484.1| stress protein [Paenibacillus curdlanolyticus YK9]
 gi|304346800|gb|EFM12632.1| stress protein [Paenibacillus curdlanolyticus YK9]
          Length = 250

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 16  LRERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGK-STINIDNMIILAHTL 73
           L E     +N   +R+   +TQK++  + G+ + S IS LE G+    +   +++LA  L
Sbjct: 181 LYETFQIGHNVERVRRSIGMTQKQLAEKIGYKSASPISRLERGELDRFSHSQLLLLAEAL 240

Query: 74  DTPLWKLL 81
           +    +LL
Sbjct: 241 NVTSRQLL 248


>gi|302536140|ref|ZP_07288482.1| DNA-binding protein [Streptomyces sp. C]
 gi|302445035|gb|EFL16851.1| DNA-binding protein [Streptomyces sp. C]
          Length = 287

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          D     D  LR    F    +  RK A LTQ++   + G++  +++ +E G+   ++
Sbjct: 18 DNQVEPDPDLRN---FGEVLKASRKRAGLTQEQFGPKVGYSVQYVASVEQGRRHPSV 71


>gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1]
 gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05]
 gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1]
          Length = 328

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+   +Q+E+ ++ G ++  +S+ E  +S  +++ +I L+         
Sbjct: 1  MILADKILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFGVSTDL 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LVK 63


>gi|228905100|ref|ZP_04069132.1| hypothetical protein bthur0014_62120 [Bacillus thuringiensis IBL
          4222]
 gi|228854543|gb|EEM99169.1| hypothetical protein bthur0014_62120 [Bacillus thuringiensis IBL
          4222]
          Length = 68

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ +  R +A LTQ+++ +  G  +  +S +E GK   ++   + + + ++  L ++ 
Sbjct: 3  NHVKIGRVKANLTQQQLADVVGITRQTVSLIEKGKYNPSLKLCLQICYAVNAKLDEIF 60


>gi|229177518|ref|ZP_04304897.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W]
 gi|228605965|gb|EEK63407.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W]
          Length = 60

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +  ++Q+++    G  +  I  LE GK   +      +A  L  P+  L 
Sbjct: 1  MKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKVPIEVLF 56


>gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum
          DSM 5476]
 gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum
          DSM 5476]
          Length = 174

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N+  + RK+  L+Q+E+  + G ++  IS+ ET ++  +I     +A   +  L +L+
Sbjct: 23 LGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQSKKMASIYNVSLDELI 82


>gi|187929409|ref|YP_001899896.1| putative phage repressor [Ralstonia pickettii 12J]
 gi|187726299|gb|ACD27464.1| putative phage repressor [Ralstonia pickettii 12J]
          Length = 302

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           F N     R + +++Q+ +  +   +QS I+++E G++  +   ++ LA  L  P+  L
Sbjct: 59  FANRVLARRTQLEMSQEALAKKARLSQSTIAQIERGRNRGS-KYVVALADALLVPVRWL 116


>gi|187733300|ref|YP_001879888.1| repressor protein C2 [Shigella boydii CDC 3083-94]
 gi|187430292|gb|ACD09566.1| repressor protein C2 [Shigella boydii CDC 3083-94]
          Length = 218

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77
                  N R++A LTQ  +  + G  +  IS+ E G   + N D +  +A  L    
Sbjct: 2  KSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSFNGDTLFKVAAALGCSP 60


>gi|196045440|ref|ZP_03112671.1| conserved domain protein [Bacillus cereus 03BB108]
 gi|196023647|gb|EDX62323.1| conserved domain protein [Bacillus cereus 03BB108]
          Length = 68

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ +  R +A LTQ+++ +  G  +  +S +E GK   ++   + + + ++  L ++ 
Sbjct: 3  NHVKIGRVKANLTQQQLADVVGITRQTVSLIEKGKYNPSLKLCLQICYAVNAKLDEIF 60


>gi|167621033|ref|ZP_02389664.1| gp68 [Burkholderia thailandensis Bt4]
          Length = 103

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  R   ++TQ  +    G ++ ++S++ET +     D +  +A  L  P+  L++
Sbjct: 41 VRAWRNHLRMTQDALAAAAGISKPYLSQIETRQRVGTTDVLSKIASALAVPVDDLIE 97


>gi|297585237|ref|YP_003701017.1| XRE family transcriptional regulator [Bacillus selenitireducens
          MLS10]
 gi|297143694|gb|ADI00452.1| transcriptional regulator, XRE family [Bacillus selenitireducens
          MLS10]
          Length = 195

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWK 79
          +  +N + +RKE  ++ +++   +G ++S + ++E     +  ++ +  LA  LD  +  
Sbjct: 1  MLKDNLKKLRKERGMSMRKLAELSGVSRSTLHDIENLNMKSTTLNTLEKLADALDVSVNY 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|254374210|ref|ZP_04989692.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571930|gb|EDN37584.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 75

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  RK+  LTQ ++   +G    +I E+E GKST +I  +I LA +L 
Sbjct: 15 IKKARKKQGLTQADLTGISGLGTRFIGEVENGKSTAHIGKVIQLASSLG 63


>gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 273

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +    +R+E  L+Q+++ ++   ++  +S+ E+ ++   +  +I L+   +  L  L+
Sbjct: 3  FCDKLIELRRERGLSQEQLADQLDVSRQSVSKWESDQTMPELSKLITLSEIFEVSLDYLM 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|134292421|ref|YP_001116157.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134135578|gb|ABO56692.1| transcriptional regulator, XRE family with cupin sensor
          [Burkholderia vietnamiensis G4]
          Length = 193

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +R+  K T  +     G ++ ++S++E G ++ ++ ++  +A  L  
Sbjct: 17 LGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAGIAQALGV 70


>gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 126

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +RKE K+TQ+E+ N  G ++S +S  ET K   +   +  LA   +  +  L
Sbjct: 1  MLYERLVELRKERKMTQEELANVLGISRSALSLYETDKRQPDFQTICRLADFFNVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|322372373|ref|ZP_08046909.1| transcriptional regulator [Streptococcus sp. C150]
 gi|321277415|gb|EFX54484.1| transcriptional regulator [Streptococcus sp. C150]
          Length = 307

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F +  R +R    LT+++        +   ++ +ETGKS   ++ +  LA  L+  L +L
Sbjct: 6  FGHRLRELRLAQGLTKEKFCEGDEVLSVRQLTRIETGKSQPKLETLEHLARRLNISLSEL 65

Query: 81 L 81
          L
Sbjct: 66 L 66


>gi|315655012|ref|ZP_07907916.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490668|gb|EFU80289.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 326

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R    LTQ E+   +G  QS IS  E  K  I+      LA  +  P   L+
Sbjct: 17 LRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVPAHTLM 72


>gi|290509145|ref|ZP_06548516.1| conserved hypothetical DNA-binding protein [Klebsiella sp.
          1_1_55]
 gi|289778539|gb|EFD86536.1| conserved hypothetical DNA-binding protein [Klebsiella sp.
          1_1_55]
          Length = 200

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK+ K++  E+  R G ++  + E+E  ++  +I  +  LA  +   +  
Sbjct: 20 EAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLCRLATAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|228931333|ref|ZP_04094262.1| Transcription regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228828336|gb|EEM74042.1| Transcription regulator [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
          Length = 135

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RK   L+Q+++ ++ G  +  IS+ E  K T +I+N+I+L+  ++  L  L+K
Sbjct: 11 RKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSDEMNISLDNLIK 63


>gi|224825808|ref|ZP_03698912.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224602032|gb|EEG08211.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 65

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +  RK   LTQ ++    G +Q+ IS+LE G   ++ D    LA  L   + K+L P
Sbjct: 4  MKEARKRLGLTQNDLAKAVGASQAHISKLENGTEQVSPDLAKRLAVELGLDVVKILYP 61


>gi|149006628|ref|ZP_01830327.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae SP18-BS74]
 gi|307127920|ref|YP_003879951.1| transcriptional activator [Streptococcus pneumoniae 670-6B]
 gi|147761926|gb|EDK68889.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae SP18-BS74]
 gi|306484982|gb|ADM91851.1| transcriptional activator [Streptococcus pneumoniae 670-6B]
 gi|332072878|gb|EGI83359.1| transcriptional activator, Rgg/GadR/MutR family, C-terminal
          domain protein [Streptococcus pneumoniae GA17545]
          Length = 283

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  +   F+ IRK   LTQ+++  +    ++ ++ +E GK   + +NM+ L   +D  L 
Sbjct: 2  RWDYGQIFKEIRKSKGLTQQDVCGQV-IHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLA 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|104781203|ref|YP_607701.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110190|emb|CAK14897.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 181

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R+   L+Q+E+  R+G   S IS++E  + + ++ ++  L   +   L +  
Sbjct: 4  GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEFF 62


>gi|53721418|ref|YP_110403.1| DNA-binding regulatory protein [Burkholderia pseudomallei K96243]
 gi|52211832|emb|CAH37831.1| putative DNA-binding regulatory protein [Burkholderia
          pseudomallei K96243]
          Length = 81

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RKE  ++Q+ + +     +S + ++E G+  +   N+I +A  +     +L
Sbjct: 16 LLGAAIRARRKELAMSQEVLADFVEIDRSHLGKIERGERNVTFMNIIRIARVMQLLPSEL 75

Query: 81 LK 82
          L+
Sbjct: 76 LR 77


>gi|15903593|ref|NP_359143.1| hypothetical protein spr1550 [Streptococcus pneumoniae R6]
 gi|116516974|ref|YP_816973.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae D39]
 gi|148989361|ref|ZP_01820729.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae SP6-BS73]
 gi|149002001|ref|ZP_01826955.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae SP14-BS69]
 gi|168493613|ref|ZP_02717756.1| transcriptional activator, Rgg/GadR/MutR family, C- domain
          [Streptococcus pneumoniae CDC3059-06]
 gi|221232442|ref|YP_002511595.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225855136|ref|YP_002736648.1| transcriptional activator, Rgg/GadR/MutR family, C- domain
          protein [Streptococcus pneumoniae JJA]
 gi|237649247|ref|ZP_04523499.1| transcriptional activator, Rgg/GadR/MutR family, C- domain
          protein [Streptococcus pneumoniae CCRI 1974]
 gi|237822007|ref|ZP_04597852.1| transcriptional activator, Rgg/GadR/MutR family, C- domain
          protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|15459215|gb|AAL00354.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077550|gb|ABJ55270.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae D39]
 gi|147759810|gb|EDK66800.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae SP14-BS69]
 gi|147925111|gb|EDK76191.1| transcriptional activator, Rgg/GadR/MutR family protein
          [Streptococcus pneumoniae SP6-BS73]
 gi|183576475|gb|EDT97003.1| transcriptional activator, Rgg/GadR/MutR family, C- domain
          [Streptococcus pneumoniae CDC3059-06]
 gi|220674903|emb|CAR69478.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225722302|gb|ACO18155.1| transcriptional activator, Rgg/GadR/MutR family, C- domain
          protein [Streptococcus pneumoniae JJA]
 gi|332074044|gb|EGI84522.1| transcriptional activator, Rgg/GadR/MutR family, C-terminal
          domain protein [Streptococcus pneumoniae GA41301]
          Length = 283

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  +   F+ IRK   LTQ+++  +    ++ ++ +E GK   + +NM+ L   +D  L 
Sbjct: 2  RWDYGQIFKEIRKSKGLTQQDVCGQV-IHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLA 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|19553167|ref|NP_601169.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|62390802|ref|YP_226204.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21324732|dbj|BAB99355.1| Predicted transcriptional regulators [Corynebacterium glutamicum
          ATCC 13032]
 gi|41326140|emb|CAF20303.1| Predicted transcriptional regulator [Corynebacterium glutamicum
          ATCC 13032]
          Length = 107

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               R       R+ R +  +T +E+   +  +  ++SELE G+  ++ + +  + H L
Sbjct: 21 PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHAL 80

Query: 74 DTPLWKLL 81
             +  +L
Sbjct: 81 GASVADVL 88


>gi|22125904|ref|NP_669327.1| hypothetical protein y2012 [Yersinia pestis KIM 10]
 gi|45441900|ref|NP_993439.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Microtus str. 91001]
 gi|51596563|ref|YP_070754.1| DNA-binding phage-related protein [Yersinia pseudotuberculosis IP
          32953]
 gi|108807662|ref|YP_651578.1| putative DNA-binding phage-related protein [Yersinia pestis
          Antiqua]
 gi|108811942|ref|YP_647709.1| DNA-binding phage-related protein [Yersinia pestis Nepal516]
 gi|145598128|ref|YP_001162204.1| DNA-binding phage-related protein [Yersinia pestis Pestoides F]
 gi|149365768|ref|ZP_01887803.1| putative DNA-binding phage-related protein [Yersinia pestis
          CA88-4125]
 gi|153950887|ref|YP_001400792.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|162418253|ref|YP_001606667.1| DNA-binding protein [Yersinia pestis Angola]
 gi|165927217|ref|ZP_02223049.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165938615|ref|ZP_02227171.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|166010729|ref|ZP_02231627.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166210450|ref|ZP_02236485.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|167400901|ref|ZP_02306407.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167422141|ref|ZP_02313894.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167424955|ref|ZP_02316708.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|167467109|ref|ZP_02331813.1| DNA-binding protein [Yersinia pestis FV-1]
 gi|170024166|ref|YP_001720671.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          YPIII]
 gi|186895621|ref|YP_001872733.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis
          PB1/+]
 gi|218929412|ref|YP_002347287.1| putative DNA-binding phage-related protein [Yersinia pestis CO92]
 gi|229837841|ref|ZP_04458000.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229894999|ref|ZP_04510177.1| putative DNA-binding phage-related protein [Yersinia pestis
          Pestoides A]
 gi|229898402|ref|ZP_04513549.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229902249|ref|ZP_04517369.1| putative DNA-binding phage-related protein [Yersinia pestis
          Nepal516]
 gi|294503665|ref|YP_003567727.1| putative DNA-binding phage-related protein [Yersinia pestis
          Z176003]
 gi|21958841|gb|AAM85578.1|AE013804_2 hypothetical [Yersinia pestis KIM 10]
 gi|45436763|gb|AAS62316.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Microtus str. 91001]
 gi|51589845|emb|CAH21477.1| putative DNA-binding phage-related protein [Yersinia
          pseudotuberculosis IP 32953]
 gi|108775590|gb|ABG18109.1| DNA-binding phage-related protein [Yersinia pestis Nepal516]
 gi|108779575|gb|ABG13633.1| putative DNA-binding phage-related protein [Yersinia pestis
          Antiqua]
 gi|115348023|emb|CAL20948.1| putative DNA-binding phage-related protein [Yersinia pestis CO92]
 gi|145209824|gb|ABP39231.1| DNA-binding phage-related protein [Yersinia pestis Pestoides F]
 gi|149292181|gb|EDM42255.1| putative DNA-binding phage-related protein [Yersinia pestis
          CA88-4125]
 gi|152962382|gb|ABS49843.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758]
 gi|162351068|gb|ABX85016.1| DNA-binding protein [Yersinia pestis Angola]
 gi|165913489|gb|EDR32110.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165920885|gb|EDR38133.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          F1991016]
 gi|165990431|gb|EDR42732.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          E1979001]
 gi|166207630|gb|EDR52110.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          B42003004]
 gi|166958953|gb|EDR55974.1| DNA-binding protein [Yersinia pestis biovar Orientalis str.
          MG05-1020]
 gi|167049754|gb|EDR61162.1| DNA-binding protein [Yersinia pestis biovar Antiqua str.
          UG05-0454]
 gi|167056142|gb|EDR65920.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str.
          K1973002]
 gi|169750700|gb|ACA68218.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis YPIII]
 gi|186698647|gb|ACC89276.1| transcriptional regulator, XRE family [Yersinia
          pseudotuberculosis PB1/+]
 gi|229680584|gb|EEO76680.1| putative DNA-binding phage-related protein [Yersinia pestis
          Nepal516]
 gi|229688692|gb|EEO80761.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Orientalis str. India 195]
 gi|229694207|gb|EEO84254.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Orientalis str. PEXU2]
 gi|229702094|gb|EEO90115.1| putative DNA-binding phage-related protein [Yersinia pestis
          Pestoides A]
 gi|262362216|gb|ACY58937.1| putative DNA-binding phage-related protein [Yersinia pestis
          D106004]
 gi|262365549|gb|ACY62106.1| putative DNA-binding phage-related protein [Yersinia pestis
          D182038]
 gi|294354124|gb|ADE64465.1| putative DNA-binding phage-related protein [Yersinia pestis
          Z176003]
          Length = 107

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R++  LTQ+E+  R G  +  IS +E G  + N+  +   A  L 
Sbjct: 35 RQAMMTELKAARQQCNLTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 90


>gi|312126969|ref|YP_003991843.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311776988|gb|ADQ06474.1| helix-turn-helix domain protein [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 103

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  RK    T KEI   TG + S+IS +E G    +++N+ ++   +   L +  
Sbjct: 3  VGSRIRYFRKLYNKTLKEISLDTGLSISFISNIEKGIKKCSLENLEVICSAIGITLSEFF 62


>gi|312865753|ref|ZP_07725975.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311098628|gb|EFQ56850.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 209

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +RK+   TQ+ +   TG +   I  +E G  + +++ + ++A+ L+  + +L K
Sbjct: 7  VATLRKQRGWTQERLAEETGLSVRTIQRIERGDDS-SLETLGLVANALELSIKELFK 62


>gi|332652423|ref|ZP_08418168.1| putative helix-turn-helix domain containing protein
          [Ruminococcaceae bacterium D16]
 gi|332517569|gb|EGJ47172.1| putative helix-turn-helix domain containing protein
          [Ruminococcaceae bacterium D16]
          Length = 75

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 13 DAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIIL 69
          +   RE+ I F    +  RK   +TQ+   +  G + S+++++E+      ++++ +  +
Sbjct: 2  ETAYREQFIRFGLKVQYYRKLHGMTQEAFADAIGKSWSFVAKVESPTRPFGVSMETIFKI 61

Query: 70 AHTLDTPLWKLLK 82
          A  L+ P+ KL +
Sbjct: 62 AEVLEIPVSKLFE 74


>gi|307352509|ref|YP_003893560.1| XRE family transcriptional regulator [Methanoplanus petrolearius
          DSM 11571]
 gi|307155742|gb|ADN35122.1| transcriptional regulator, XRE family [Methanoplanus petrolearius
          DSM 11571]
          Length = 64

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+ +    G  +  I  +E GK   ++D    +A   +  + ++ 
Sbjct: 3  NRIKVFRAMHDLTQEGLAKELGVTRQTILAIEKGKYDPSLDLAFKIAKYFNVKIEEVF 60


>gi|288935075|ref|YP_003439134.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889784|gb|ADC58102.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
          Length = 200

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK+ K++  E+  R G ++  + E+E  ++  +I  +  LA  +   +  
Sbjct: 20 EAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLCRLATAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC
          33386]
 gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC
          33386]
          Length = 108

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 37/63 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +N +N RK  KLTQ+E+ ++ G  +  +++ E+GK ++ +  +  ++  LDTP+  
Sbjct: 3  KLIGSNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSD 62

Query: 80 LLK 82
            K
Sbjct: 63 FFK 65


>gi|126652436|ref|ZP_01724608.1| Transcriptional regulator [Bacillus sp. B14905]
 gi|126590707|gb|EAZ84822.1| Transcriptional regulator [Bacillus sp. B14905]
          Length = 183

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 31/59 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            + IR++  L+  ++   TG +++ ++++E G++   +  +  +A  +      LL+P
Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRISFSSLLQP 69


>gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1]
 gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1]
          Length = 225

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   +T  ++      +   +S++E G ++ ++  +  L+  L+TP+    
Sbjct: 45  GAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALNTPISSFF 103


>gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa
          SC2]
 gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa
          SC2]
          Length = 122

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +      +R+   L Q+E+    G  ++ +S  E  +   + + +  LA   +  +  L+
Sbjct: 3  YGTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDYLV 62


>gi|296163497|ref|ZP_06846243.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295886255|gb|EFG66127.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 124

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R +A +TQ+++    G     IS  E G +   +  +  LA     P   L+
Sbjct: 16 GQALARARLDADMTQEQVSEALGVNTETISRFERGHTAPPLFRLFELAEVYGVPPETLI 74


>gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens
          AG86]
 gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens
          AG86]
          Length = 64

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +RKE  +TQ+E+    G  +  I  +E GK   ++   + +       +  + +
Sbjct: 3  NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYDPSLKLALKIVKFFGVKVEDVFE 61


>gi|152998212|ref|YP_001343047.1| helix-turn-helix domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150839136|gb|ABR73112.1| helix-turn-helix domain protein [Marinomonas sp. MWYL1]
          Length = 69

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ RK   ++Q+ +  ++   +S++  +E G+  + +  +  +A +++    KLL
Sbjct: 8  VGELIRSQRKARGISQEALAAKSKIDRSYMGRIERGEVNVTLKALWDIAASMEIST-KLL 66

Query: 82 KP 83
           P
Sbjct: 67 IP 68


>gi|331699234|ref|YP_004335473.1| helix-turn-helix domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326953923|gb|AEA27620.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
          CB1190]
          Length = 196

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +R+E  LT   +   TG + S +S LE+G     ++ ++ +A      L  L+
Sbjct: 15 VGPRLAELRRERDLTLAALSRTTGISTSTLSRLESGHRRATLELLLPIARAYGVGLDDLV 74


>gi|313610053|gb|EFR85399.1| DNA-binding protein [Listeria monocytogenes FSL F2-208]
          Length = 89

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N + IRK   L+Q+EI  +    +  IS+ E G S  + D +I ++  L+T +  L
Sbjct: 1  MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVSTL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 268

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++          RK+ K TQ+E+  + G +   IS+ E G    +I  ++ L   L   +
Sbjct: 2  QQKEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVGYPDISLLLPLCRELGIEV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 SQLL 65


>gi|307285484|ref|ZP_07565623.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306502708|gb|EFM71973.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
          Length = 231

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R E  LTQ E+  +    +  IS  E  KS  NID +I L+   +  L +LLK
Sbjct: 3  RNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLK 55


>gi|304315449|ref|YP_003850596.1| transcriptional regulator [Methanothermobacter marburgensis str.
          Marburg]
 gi|302588908|gb|ADL59283.1| predicted transcriptional regulator [Methanothermobacter
          marburgensis str. Marburg]
          Length = 67

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R +  LTQ+E+    G  +  I  LE G+   ++     +   L     +
Sbjct: 5  IREYRNKLGLTQEELAEMVGVTRQTIITLERGRYNPSLILAHRITRALGGEHIE 58


>gi|296110828|ref|YP_003621209.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154]
 gi|295832359|gb|ADG40240.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ RKE K+TQ +       +   IS  E+G++  +IDN+I++A  L+  L +LL
Sbjct: 3  FSELIKSQRKERKMTQVDFSELLMVSSKTISNWESGRTLPDIDNVILIAKKLNISLDQLL 62


>gi|293380851|ref|ZP_06626887.1| helix-turn-helix protein [Lactobacillus crispatus 214-1]
 gi|312984051|ref|ZP_07791399.1| putative transcriptional regulator [Lactobacillus crispatus
          CTV-05]
 gi|290922524|gb|EFD99490.1| helix-turn-helix protein [Lactobacillus crispatus 214-1]
 gi|310894553|gb|EFQ43627.1| putative transcriptional regulator [Lactobacillus crispatus
          CTV-05]
          Length = 194

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  +   FR +RK  K++  +     G ++S +   E G++ ++I+ +  L   +     
Sbjct: 2  KETYGRKFRKLRKATKISSSKAAEAVGISRSKLERWERGEAGLDIEKVFKLLEVIHVQKI 61

Query: 79 KLL 81
             
Sbjct: 62 DFF 64


>gi|229004528|ref|ZP_04162267.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4]
 gi|228756719|gb|EEM06025.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4]
          Length = 404

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE +LTQ E+   +   +S +S++E GK+T ++  +  LA  L+     LL
Sbjct: 4  LGEKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|228477905|ref|ZP_04062519.1| putative DNA-binding protein [Streptococcus salivarius SK126]
 gi|228250395|gb|EEK09635.1| putative DNA-binding protein [Streptococcus salivarius SK126]
          Length = 307

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F +  R +R    LT+++        +   ++ +ETGKS   ++ +  LA  L+  L +L
Sbjct: 6  FGHRLRELRLAQGLTKEKFCEGDEVLSVRQLTRIETGKSQPKLETLEHLARRLNISLSEL 65

Query: 81 L 81
          L
Sbjct: 66 L 66


>gi|227357992|ref|ZP_03842334.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
 gi|227161727|gb|EEI46759.1| conserved hypothetical protein [Proteus mirabilis ATCC 29906]
          Length = 100

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  R    ++ K +  +   +Q  IS LE G++   I+ ++ L + LD  ++ L+
Sbjct: 12 VGSFIRRHRTLLGISGKSLGKKLNLSQQHISRLERGQTNFTIEIILYLLNELDKTIFDLV 71


>gi|213970379|ref|ZP_03398508.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381163|ref|ZP_07229581.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato Max13]
 gi|302062403|ref|ZP_07253944.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato K40]
 gi|302132576|ref|ZP_07258566.1| transcriptional regulator, putative [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|213924850|gb|EEB58416.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
          Length = 212

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R +  L+   +   TG +++ ++++E+G+S  +I  +  +A  L   +   L
Sbjct: 32 VARNLQRLRSKRYLSMDALARLTGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSIAAFL 91

Query: 82 K 82
          +
Sbjct: 92 E 92


>gi|307150337|ref|YP_003885721.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306980565|gb|ADN12446.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 116

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIILAHTLDTPLWK 79
          F    R  RK+  L+Q+E+    G   +++S+LE  ++      D +  LA  L     +
Sbjct: 5  FGQIIRKARKDKGLSQRELAESLGLDFTYLSKLENNRADYAPKEDIIRALAENLGLDAEE 64

Query: 80 LL 81
          L+
Sbjct: 65 LI 66


>gi|120610433|ref|YP_970111.1| putative prophage repressor [Acidovorax citrulli AAC00-1]
 gi|120588897|gb|ABM32337.1| phage repressor protein [Acidovorax citrulli AAC00-1]
          Length = 230

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
             D I   + I     R  R+ A LTQ  +  R   +Q  I  +E+G      D ++ +
Sbjct: 2  QSFDTITPVKTI-AERLRAARERAGLTQPALAQRANVSQGTIGNIESGLRKRPRD-LLAI 59

Query: 70 AHTLDT-PLW 78
          A  L   PLW
Sbjct: 60 AAALHVSPLW 69


>gi|113461078|ref|YP_719146.1| hypothetical protein HS_0935 [Haemophilus somnus 129PT]
 gi|112823121|gb|ABI25210.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 143

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N R  R+  K+TQ+ +  R   +++  ++ E G+S I I+ ++ +A  L+ PL  L+
Sbjct: 9  ENIRTFRENKKMTQEMMAERLNVSKTCYAKWERGESQIRIERLVQIAQILEVPLEDLM 66


>gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925]
 gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925]
          Length = 108

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +RK   L Q       G +Q+ IS +E G   +    +  +    +   
Sbjct: 3  ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTINDICRIYNVSP 56


>gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 116

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +++R EA LTQKEI  +    Q   +  E G    + + +   A   D     L
Sbjct: 1  MFTERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGGRKPSSETLNKFAEFFDVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|257879449|ref|ZP_05659102.1| predicted protein [Enterococcus faecium 1,230,933]
 gi|257813677|gb|EEV42435.1| predicted protein [Enterococcus faecium 1,230,933]
          Length = 133

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 10 HLSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          H  + I  +  I         R  R E   +Q ++    G + + +S +E G++ +++  
Sbjct: 7  HSMEVIETQPEIDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAM 66

Query: 66 MIILAHTLDT 75
          ++ LA  L+ 
Sbjct: 67 LLKLAFVLEK 76


>gi|228996851|ref|ZP_04156485.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17]
 gi|228762912|gb|EEM11825.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17]
          Length = 404

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE +LTQ E+   +   +S +S++E GK+T ++  +  LA  L+     LL
Sbjct: 4  LGEKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|225378523|ref|ZP_03755744.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans
          DSM 16841]
 gi|257438006|ref|ZP_05613761.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|225209626|gb|EEG91980.1| hypothetical protein ROSEINA2194_04191 [Roseburia inulinivorans
          DSM 16841]
 gi|257199666|gb|EEU97950.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 159

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 14 AILRER---MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIIL 69
           I +ER   M+F    +  R EA LTQ E+  + G     I   E G    + +  +  +
Sbjct: 13 VIKKERGIPMVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKI 72

Query: 70 AHTLDTPLWKLL 81
          A  L+T    LL
Sbjct: 73 ADALNTTTEYLL 84


>gi|190570721|ref|YP_001975079.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356993|emb|CAQ54382.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 304

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G++ + +D +  +A  L   +  LL
Sbjct: 165 GKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 223



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R E   TQK++  + G     I + E G   I+I+ +  +   L   +  L+
Sbjct: 13 VGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72


>gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
          Length = 69

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  +  L  + 
Sbjct: 13 RAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSLTDVF 64


>gi|108803769|ref|YP_643706.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108765012|gb|ABG03894.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 155

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLWKL 80
              R +R+ A L+Q+E+    G++++W++ELE    T  ++ ++  L   L   +  L
Sbjct: 8  GARLRELRERAGLSQEELSEIVGYSRTWVAELERQSRTYVLEILVQKLVAALGVGISDL 66



 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS----TINIDNMIILAHTLDTPLWKLL 81
            R +R+ A L+Q+E+  R G A   ++  E          +++ +  LA  L+T    L+
Sbjct: 89  LRALRERAGLSQEELERRAGLAPGSVARAEGAGEGDEIRASVETLWRLARALETSPTHLV 148


>gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 152

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R +R E K+ Q+++    G ++S I   E G+   ++  +  +A         L
Sbjct: 11 ILGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGEREPSLILLREIADFFRVSADFL 70

Query: 81 L 81
          L
Sbjct: 71 L 71


>gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae
          ATCC 10712]
          Length = 476

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 20 MIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I+     R +R+E  + Q E+    G + S+++++E  +  +    ++ +A       
Sbjct: 8  KIYAHAKLRRLRRERGMNQVELARALGLSTSYLNQIEHSQRPLTAPVLLRIAEVFGVDP 66


>gi|325977281|ref|YP_004286997.1| HTH-type transcriptional regulator [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|325177209|emb|CBZ47253.1| Uncharacterized HTH-type transcriptional regulator HI0659
          [Streptococcus gallolyticus subsp. gallolyticus ATCC
          BAA-2069]
          Length = 91

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            N R +A LTQ+++   +   QS I+ +E G    +I+ M  LA  L+  L
Sbjct: 36 VANARSKAGLTQRQLSELSHVPQSTIARIERG-HNTSIETMSKLAVALNQEL 86


>gi|326772314|ref|ZP_08231599.1| toxin-antitoxin system, antitoxin component, Xre family
          [Actinomyces viscosus C505]
 gi|326638447|gb|EGE39348.1| toxin-antitoxin system, antitoxin component, Xre family
          [Actinomyces viscosus C505]
          Length = 107

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M   +R E + +      R+       N R  A ++Q E+  R G  QS IS +E G   
Sbjct: 25 MTEAERAEYNRAAIETEARLQLAELVYNARAAAGISQTELARRAGTRQSVISAIENGAQA 84

Query: 61 INIDNMIILAHTLD 74
               +  +AH L 
Sbjct: 85 PGGVMLARIAHALG 98


>gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104]
          Length = 167

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ+E+ N T      I   E G++ I  D   +LA      +  LL
Sbjct: 5  NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLL 62


>gi|281491219|ref|YP_003353199.1| Cro/CI family transcriptional regulator [Lactococcus lactis
          subsp. lactis KF147]
 gi|281374960|gb|ADA64478.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis
          subsp. lactis KF147]
          Length = 104

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  RK   LTQKE+ ++       ++  E G +  +I+ +  +  TL      LL
Sbjct: 6  LGDKLKASRKSKNLTQKELADKINVKTRTVASYEQGSAYPSIEVLGKICDTLGISSDYLL 65


>gi|284989101|ref|YP_003407655.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284062346|gb|ADB73284.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 213

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R IR+ A L+Q+E+  R G ++S ++  E+G+S I++  +   A      L  L
Sbjct: 10 LRRIRRTADLSQRELAARIGISKSAVAAAESGRSGIDVRALARAAEVAGLRLALL 64


>gi|29375148|ref|NP_814301.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|256852520|ref|ZP_05557895.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256964687|ref|ZP_05568858.1| CylR2 [Enterococcus faecalis HIP11704]
 gi|257085876|ref|ZP_05580237.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|307272302|ref|ZP_07553561.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|21693300|gb|AAM75247.1|AF454824_42 EF0042 [Enterococcus faecalis]
 gi|29342607|gb|AAO80372.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|256712067|gb|EEU27100.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256955183|gb|EEU71815.1| CylR2 [Enterococcus faecalis HIP11704]
 gi|256993906|gb|EEU81208.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|306511024|gb|EFM80035.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|315027717|gb|EFT39649.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
          Length = 66

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +NN + IR++ K++Q E+      ++  I+ +E  K   ++   + +A+ LDTPL  +
Sbjct: 1  MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLDTPLEDI 60

Query: 81 LK 82
           +
Sbjct: 61 FQ 62


>gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1]
 gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1]
          Length = 120

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M       N+RK+  LTQ  + +    +QS I+  E+ + +++ D++I L+         
Sbjct: 1  MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 164

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ+E+ N T      I   E G++ I  D   +LA      +  LL
Sbjct: 2  NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLL 59


>gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150]
 gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150]
          Length = 229

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   ++Q  +    G ++S     E GK+  N  N+ +LA     
Sbjct: 4  GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56


>gi|289825657|ref|ZP_06544828.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|262197634|ref|YP_003268843.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262080981|gb|ACY16950.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 147

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +  R  R    LTQ++   R   +  + + +E G S  ++  +  +A  L      
Sbjct: 7  KSIGSAARQARTALGLTQEDAAERLDVSVEFYARIERGNSLPSVPTLARIAAVLGVSADA 66

Query: 80 LL 81
          LL
Sbjct: 67 LL 68


>gi|258406482|ref|YP_003199224.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
 gi|257798709|gb|ACV69646.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
           DSM 5692]
          Length = 117

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R  R  + LTQ E+  +TG AQS +S +E GK  I  D    LA  LD
Sbjct: 62  LRAARNRSGLTQIELSEKTGIAQSHLSSMENGKLEIGKDRAKRLAEVLD 110


>gi|322614855|gb|EFY11780.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315996572]
 gi|322619297|gb|EFY16177.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-1]
 gi|322623108|gb|EFY19950.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-3]
 gi|322628399|gb|EFY25187.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 495297-4]
 gi|322638630|gb|EFY35325.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-2]
 gi|322640981|gb|EFY37628.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 531954]
 gi|322645436|gb|EFY41964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. NC_MB110209-0054]
 gi|322651679|gb|EFY48051.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322654419|gb|EFY50741.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322661261|gb|EFY57487.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322665035|gb|EFY61223.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 81038-01]
 gi|322667779|gb|EFY63939.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MD_MDA09249507]
 gi|322671809|gb|EFY67930.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 414877]
 gi|322677145|gb|EFY73209.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 366867]
 gi|322680191|gb|EFY76230.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 413180]
 gi|322685379|gb|EFY81375.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 446600]
 gi|323194734|gb|EFZ79923.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609458-1]
 gi|323199893|gb|EFZ84981.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556150-1]
 gi|323204415|gb|EFZ89423.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 609460]
 gi|323205808|gb|EFZ90771.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 507440-20]
 gi|323213863|gb|EFZ98638.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 556152]
 gi|323218217|gb|EGA02928.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB101509-0077]
 gi|323219101|gb|EGA03605.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB102109-0047]
 gi|323223909|gb|EGA08207.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB110209-0055]
 gi|323231997|gb|EGA16104.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. MB111609-0052]
 gi|323234524|gb|EGA18611.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009083312]
 gi|323237976|gb|EGA22035.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 2009085258]
 gi|323246445|gb|EGA30427.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2009159199]
 gi|323253730|gb|EGA37557.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008282]
 gi|323259005|gb|EGA42655.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008283]
 gi|323260789|gb|EGA44393.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008284]
 gi|323266543|gb|EGA50030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008285]
 gi|323271267|gb|EGA54694.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. IA_2010008287]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|213857689|ref|ZP_03384660.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. M223]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|204927953|ref|ZP_03219154.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|204323295|gb|EDZ08491.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Javiana str. GA_MM04042433]
 gi|322634804|gb|EFY31535.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 515920-1]
 gi|323243422|gb|EGA27441.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 315731156]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|195873244|ref|ZP_02696881.2| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197264542|ref|ZP_03164616.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
 gi|195634360|gb|EDX52712.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL317]
 gi|197242797|gb|EDY25417.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA23]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|194735253|ref|YP_002114629.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|197300747|ref|ZP_02660781.2| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|194710755|gb|ACF89976.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Schwarzengrund str. CVM19633]
 gi|197291093|gb|EDY30446.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|194471472|ref|ZP_03077456.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|205358313|ref|ZP_02655078.2| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
 gi|194457836|gb|EDX46675.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CVM29188]
 gi|205335557|gb|EDZ22321.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Kentucky str. CDC 191]
          Length = 185

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|194445981|ref|YP_002040851.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
 gi|194404644|gb|ACF64866.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Newport str. SL254]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|197251173|ref|YP_002146431.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|238911841|ref|ZP_04655678.1| transcriptional regulator, XRE family protein [Salmonella
          enterica subsp. enterica serovar Tennessee str.
          CDC07-0191]
 gi|197214876|gb|ACH52273.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|167549918|ref|ZP_02343676.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
 gi|205325107|gb|EDZ12946.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Saintpaul str. SARA29]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|161613938|ref|YP_001587903.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
 gi|161363302|gb|ABX67070.1| hypothetical protein SPAB_01676 [Salmonella enterica subsp.
          enterica serovar Paratyphi B str. SPB7]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|154687496|ref|YP_001422657.1| YvaO [Bacillus amyloliquefaciens FZB42]
 gi|126363006|emb|CAM35822.1| hypothetical protein YvaO [Bacillus amyloliquefaciens FZB42]
 gi|154353347|gb|ABS75426.1| YvaO [Bacillus amyloliquefaciens FZB42]
          Length = 143

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R+  KLT  ++   +G + + IS +E G         +  LA TL  P  +L
Sbjct: 4  FGKQLRELRRARKLTVNQLAVYSGVSSATISRIENGHRGIPKPATIRKLADTLKIPYEEL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|157369697|ref|YP_001477686.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157321461|gb|ABV40558.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 189

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 32/71 (45%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + + +    +       ++R++   + +E+  +TG +++ +S +E  +++     +  L 
Sbjct: 1  MDNGLESADLRLAQRLSDLRQQQGWSLEELAQQTGISRATLSRVERAETSPTASLLNKLC 60

Query: 71 HTLDTPLWKLL 81
                + +LL
Sbjct: 61 SAYGLTMSRLL 71


>gi|110799647|ref|YP_695478.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110803761|ref|YP_698224.1| transcriptional regulator [Clostridium perfringens SM101]
 gi|169346849|ref|ZP_02865797.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|110674294|gb|ABG83281.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110684262|gb|ABG87632.1| transcriptional regulator [Clostridium perfringens SM101]
 gi|169296908|gb|EDS79032.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
          Length = 69

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R  A ++Q E+  + G A+  I+ +E  K   ++D  I +A  L T L  L 
Sbjct: 2  NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59


>gi|16760275|ref|NP_455892.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|29141958|ref|NP_805300.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|213021706|ref|ZP_03336153.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. 404ty]
 gi|213052213|ref|ZP_03345091.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E00-7866]
 gi|213416599|ref|ZP_03349743.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E01-6750]
 gi|213426252|ref|ZP_03359002.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E02-1180]
 gi|213582138|ref|ZP_03363964.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
 gi|25512933|pir||AG0668 probable DNA-binding protein STY1459 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502570|emb|CAD01720.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi]
 gi|29137587|gb|AAO69149.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|306830740|ref|ZP_07463904.1| transcriptional regulator [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|304427087|gb|EFM30195.1| transcriptional regulator [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
          Length = 68

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R E  L+Q  +    G +++ IS +ETG+ +      ++L   LD     L 
Sbjct: 9  NNVKQSRLEKNLSQATLAKLVGVSRNTISSIETGQFSPTAKLALLLCIALDKKFEDLF 66


>gi|296451357|ref|ZP_06893095.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296880293|ref|ZP_06904258.1| XRE family transcriptional regulator [Clostridium difficile
          NAP07]
 gi|296259773|gb|EFH06630.1| XRE family transcriptional regulator [Clostridium difficile
          NAP08]
 gi|296428736|gb|EFH14618.1| XRE family transcriptional regulator [Clostridium difficile
          NAP07]
          Length = 106

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +RKE  LTQ+E+  + G +Q  +   ET     +   +  LA   D  +  L
Sbjct: 1  MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|253315441|ref|ZP_04838654.1| helix-turn-helix domain-containing protein [Staphylococcus aureus
          subsp. aureus str. CF-Marseille]
 gi|315130180|gb|EFT86168.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus CGS03]
          Length = 61

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R    +TQKE+ N+ G  +  IS +E G    ++     +   L+  L ++ 
Sbjct: 1  MKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIF 56


>gi|237725492|ref|ZP_04555973.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436179|gb|EEO46256.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 162

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           ER+      R IR+E  +  +++    G   + +S +E GK ++ ID +  +A  L  
Sbjct: 98  ERVRIGGRIRQIREERNMEARDLAKLAGIDAANLSRIENGKYSVGIDILSKIAAVLGK 155


>gi|228920891|ref|ZP_04084230.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|228838822|gb|EEM84124.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 126

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          I  +  R +R+   L+QK + +  G   + +S  E G+     + + ++A   D 
Sbjct: 6  ILGDRIRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIADYFDV 60


>gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri
          JV-V03]
 gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri
          JV-V03]
          Length = 115

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              +++R    LTQKE+        + IS  E G++  +ID +  LAH  +  +  +
Sbjct: 4  AQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNEPSIDTLKDLAHIFNVSVDYM 61


>gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family
          [Rhizobium etli IE4771]
          Length = 190

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|182433810|ref|YP_001821529.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|182440913|ref|YP_001828632.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178462326|dbj|BAG16846.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178469429|dbj|BAG23949.1| putative transcriptional regulator [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 87

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +R E   T  E+ +RTG A+  + E+E G++  ++     +AH LD P+  L 
Sbjct: 17 LARLRSEHGWTYDELAHRTGLARRTLIEIEQGRTIGSLKTWHAIAHALDVPVDHLF 72


>gi|167574981|ref|ZP_02367855.1| hypothetical protein BoklC_34450 [Burkholderia oklahomensis
          C6786]
          Length = 386

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     ++ R  AK+TQ       GFA++ +  +E+GK  +++D +   A        +
Sbjct: 10 EVLGARLKSARSLAKMTQDVAAQALGFARTTVVAIESGKRAVSVDELRSFAELYAVSESE 69

Query: 80 LL 81
          LL
Sbjct: 70 LL 71


>gi|108799691|ref|YP_639888.1| XRE family transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868801|ref|YP_938753.1| XRE family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770110|gb|ABG08832.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS]
 gi|119694890|gb|ABL91963.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS]
          Length = 272

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F +  R  R+  +L+Q ++      +   +S LETG+ST +   ++ LA  LD PL +
Sbjct: 15 FGDVLRTWRQRRRLSQLDLAIEADVSARHLSFLETGRSTPSRAMVLRLAEVLDVPLRE 72


>gi|52421239|ref|YP_087151.1| hypothetical protein BFp0025 [Bacteroides fragilis YCH46]
 gi|254885261|ref|ZP_05257971.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|255016592|ref|ZP_05288718.1| hypothetical protein B2_22006 [Bacteroides sp. 2_1_7]
 gi|319644450|ref|ZP_07998883.1| hypothetical protein HMPREF9011_04486 [Bacteroides sp. 3_1_40A]
 gi|52218760|dbj|BAD51352.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|194022233|gb|ACF32649.1| BUN24p11.7 [Bacteroides uniformis]
 gi|254838054|gb|EET18363.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|317384091|gb|EFV65068.1| hypothetical protein HMPREF9011_04486 [Bacteroides sp. 3_1_40A]
          Length = 104

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +     +  R+   LTQ+E+ N  G  ++ IS +E GK  +    +  +   +   
Sbjct: 35 FLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGK-NLTFSTIARVFKAMGIS 90


>gi|47564475|ref|ZP_00235520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|47558627|gb|EAL16950.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
          Length = 67

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          M FV   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L 
Sbjct: 1  MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAYDIAKALH 55


>gi|94310168|ref|YP_583378.1| anaerobic benzoate catabolism transcriptional regulator
          [Cupriavidus metallidurans CH34]
 gi|93354020|gb|ABF08109.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Cupriavidus metallidurans CH34]
          Length = 316

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R    +++K++      ++ +++ LETG    ++  +  +A+ LD PL  +L
Sbjct: 30 LGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANALDVPLPVVL 89


>gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032]
 gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032]
          Length = 191

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +  E+  R G +++ I ++E G+S+     +  L+  L   +  L+
Sbjct: 13 GERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALGLSMSTLI 71


>gi|182626310|ref|ZP_02954066.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177908408|gb|EDT70950.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 65

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R  A ++Q E+  + G  +  I+ +E  K   ++D  I +A  L T L  L 
Sbjct: 2  NKIKEYRSLANMSQLELSKKVGVVRQTINLIENQKYNPSLDLCIRIAKALGTDLNTLF 59


>gi|157145722|ref|YP_001453041.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895]
 gi|157082927|gb|ABV12605.1| hypothetical protein CKO_01472 [Citrobacter koseri ATCC BAA-895]
          Length = 178

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 29/62 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++ + +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLKALRQQREWSLSRLAEATGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSTFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|154483937|ref|ZP_02026385.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC
          27560]
 gi|149734979|gb|EDM50865.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC
          27560]
          Length = 98

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK    TQ+        +    S +E G  +  I+  + +A  LDT L  L+
Sbjct: 9  GKRIKELRKAKGYTQESFAEELNISHRTYSGIELGNHSTTIETFVEMASILDTTLDYLI 67


>gi|91787363|ref|YP_548315.1| XRE family transcriptional regulator [Polaromonas sp. JS666]
 gi|91696588|gb|ABE43417.1| transcriptional regulator, XRE family [Polaromonas sp. JS666]
          Length = 201

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MPR  R      +A   +R+      R  RK  +LT K++  R+G A S +S++E G+ +
Sbjct: 1  MPRSARTPAAAPEA---DRVQLGLRLREHRKARRLTLKDLSGRSGVALSTLSKMELGQMS 57

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          ++ + +  +A  L   + +LL
Sbjct: 58 VSYEKLAAVARALSLDVGQLL 78


>gi|325298893|ref|YP_004258810.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324318446|gb|ADY36337.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 112

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              RN R +  LTQ+E+  R G  ++ IS +E G S I+I  M  +   L  
Sbjct: 45 GEAIRNARLKQNLTQEELGERIGVQKAQISRMERGYS-ISIPTMSRVFKALGI 96


>gi|313889746|ref|ZP_07823388.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313121791|gb|EFR44888.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
          Length = 121

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLD 74
            ++  F +N + +R E K+ Q E+  + G  + S ISE E GK T   D ++ +A    
Sbjct: 2  PTQKSYFPSNLKYLRLEKKMEQLELAQKIGRKSASTISEWENGKYTPKQDILLKVADLFQ 61

Query: 75 TPLWKLL 81
            +  L+
Sbjct: 62 VDINTLV 68


>gi|303229250|ref|ZP_07316046.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516105|gb|EFL58051.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 148

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N +  R     +Q E+    G + + +S  ETG    ++D +  LA   +  L +
Sbjct: 1  MQFYKNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALARYYELTLDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|294778793|ref|ZP_06744212.1| DNA-binding protein [Bacteroides vulgatus PC510]
 gi|294447449|gb|EFG16030.1| DNA-binding protein [Bacteroides vulgatus PC510]
          Length = 92

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + + KE  +T  E+ ++ G AQ+ +S++  G     I  +  +A  L  P+ +L +
Sbjct: 4  RVKEVCKEKGVTLAEVASKIGVAQASLSKMLGG--NPTIGTLEKIADALGVPVTELFE 59


>gi|288553474|ref|YP_003425409.1| putative transcriptional regulator XRE [Bacillus pseudofirmus
          OF4]
 gi|288544634|gb|ADC48517.1| putative transcriptional regulator XRE [Bacillus pseudofirmus
          OF4]
          Length = 188

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 25/63 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     + +R E   +   +   T  ++  + ++E G+S   +  +  +A  L+     
Sbjct: 8  KLIGVRLKALRVEQGYSLDHLAQITTVSKPMLGQIERGESNPTVGTLWKIAKGLNVSFTS 67

Query: 80 LLK 82
           L+
Sbjct: 68 FLE 70


>gi|284990260|ref|YP_003408814.1| XRE family transcriptional regulator [Geodermatophilus obscurus
          DSM 43160]
 gi|284063505|gb|ADB74443.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
          DSM 43160]
          Length = 195

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 30/69 (43%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              E        + +R+  +LT  ++   +G  + ++S+LE  +++ ++  ++ +   L
Sbjct: 4  VSEVEVPRIGGRLKAVRQARRLTLTDVAEASGLTKGFLSKLERDQASASVAALVRVCAAL 63

Query: 74 DTPLWKLLK 82
                L +
Sbjct: 64 GISPGSLFE 72


>gi|258611915|ref|ZP_05243102.2| conserved hypothetical protein [Listeria monocytogenes FSL
          R2-503]
 gi|290892307|ref|ZP_06555302.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
 gi|293596363|ref|ZP_05230968.2| conserved hypothetical protein [Listeria monocytogenes FSL
          J1-194]
 gi|293597004|ref|ZP_05266446.2| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300764870|ref|ZP_07074859.1| prophage repressor protein [Listeria monocytogenes FSL N1-017]
 gi|258607134|gb|EEW19742.1| conserved hypothetical protein [Listeria monocytogenes FSL
          R2-503]
 gi|290558133|gb|EFD91652.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
 gi|293584645|gb|EFF96677.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293595206|gb|EFG02967.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J1-194]
 gi|300514357|gb|EFK41415.1| prophage repressor protein [Listeria monocytogenes FSL N1-017]
          Length = 117

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  +    +  IS  E G    N D +  LA   +  L  
Sbjct: 11 KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 70

Query: 80 LL 81
            
Sbjct: 71 FF 72


>gi|229092725|ref|ZP_04223870.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          Rock3-42]
 gi|228690651|gb|EEL44429.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus
          Rock3-42]
          Length = 114

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    + +RK   L Q+++ +    ++S I+  E G S  ++  +  LA   +  L  
Sbjct: 2  KTFSETLKALRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDV 61

Query: 80 L 80
          L
Sbjct: 62 L 62


>gi|227511236|ref|ZP_03941285.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577]
 gi|227085531|gb|EEI20843.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577]
          Length = 171

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R +   +Q+++ +     +  IS  E G S  ++ N+ +L+   D PL   +K
Sbjct: 7  QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVK 64


>gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 129

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+  +TQKE+ +  G +   +   E+G+ T   D +  +A   +     L
Sbjct: 1  MLGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQRTPPPDILQKIADFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|328945491|gb|EGG39642.1| transcriptional regulator [Streptococcus sanguinis SK1087]
          Length = 108

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102


>gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 220

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F       RK+  +TQ+E+ +R G ++  I++ E G    +++ +I L+      +  L
Sbjct: 1  MFHLKMIEYRKKNMMTQEELADRLGVSRQTITKWEKGTILPSLEYLIDLSRLFGVTIDHL 60

Query: 81 LK 82
          +K
Sbjct: 61 VK 62


>gi|254819823|ref|ZP_05224824.1| hypothetical protein MintA_07859 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 190

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  +T +E+  R G   S +S LE+GK  + +D++  LA  L     +LL+
Sbjct: 22 QRGMTLQEVGERAGIDVSTLSRLESGKRRLALDHLPRLARALSVSTDELLQ 72


>gi|241896173|ref|ZP_04783469.1| MutR family positive transcriptional regulator [Weissella
          paramesenteroides ATCC 33313]
 gi|241870592|gb|EER74343.1| MutR family positive transcriptional regulator [Weissella
          paramesenteroides ATCC 33313]
          Length = 300

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+   N    +RK  KL+  +  +  G + S++S +E G+S I++D + IL + LD    
Sbjct: 8  RIKVGNALHKMRKNKKLSLSDFSDI-GLSPSFLSRVENGESGISLDRLYILLNKLDVSFT 66

Query: 79 K 79
          +
Sbjct: 67 E 67


>gi|238755351|ref|ZP_04616693.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473]
 gi|238706386|gb|EEP98761.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473]
          Length = 123

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFA----QSWISELETGKSTINIDNMIILAHTLDTP 76
          +     +  R+ A L+Q+++    G       S +S  E G++T + D ++ +A  LD P
Sbjct: 1  MVPKRLKAAREAAGLSQEKLAELVGIEGVSLNSRLSNYEVGRNTPSFDFIVRIAKALDYP 60


>gi|163782866|ref|ZP_02177862.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881987|gb|EDP75495.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 71

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R+E  L+Q+E   R G     + E+E G+       ++ ++   D   W L
Sbjct: 1  MVGERVRKLREEKGLSQEEFARRIGIPVDRLREIEEGRLEPCDATLVYISKLFDVSFWWL 60


>gi|157151313|ref|YP_001449689.1| putative transcriptional regulator [Streptococcus gordonii str.
          Challis substr. CH1]
 gi|157076107|gb|ABV10790.1| putative transcriptional regulator [Streptococcus gordonii str.
          Challis substr. CH1]
          Length = 116

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   LD    +  
Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALDMTPEEFF 70


>gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 190

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L D    +R I     R +R E   +  ++   +G +++ +S LE    +     +  L 
Sbjct: 5  LPDDNAIDRRI-AQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAVSPTASVLGKLC 63

Query: 71 HTLDTPLWKLL 81
               P+ +L+
Sbjct: 64 VAYGLPMSRLM 74


>gi|89894469|ref|YP_517956.1| hypothetical protein DSY1723 [Desulfitobacterium hafniense Y51]
 gi|89333917|dbj|BAE83512.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 85

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLWK 79
             N    RK   +TQ ++  + G ++S++ E+E     +T++++ +  +A+ L     K
Sbjct: 20 LGLNIAYYRKREGMTQDQLAEKAGMSRSYLGEIEAPNMITTMSLEVLFNIANVLRIKPSK 79

Query: 80 LLK 82
          LL+
Sbjct: 80 LLE 82


>gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49]
          Length = 158

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N +++RK  +LTQ E     G +++ +S  E G S I+ + +  +    +     +
Sbjct: 1  MIGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|315657125|ref|ZP_07910009.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492228|gb|EFU81835.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 326

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 23/56 (41%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R    LTQ E+   +G  QS IS  E  K  I+      LA  +  P   L+
Sbjct: 17 LRLRRNVLGLTQAELAGMSGVPQSHISAFENHKRRISEAEETALAKAVSVPAHTLM 72


>gi|296876191|ref|ZP_06900245.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|312867365|ref|ZP_07727574.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|319946640|ref|ZP_08020874.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|322389882|ref|ZP_08063423.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
 gi|296432902|gb|EFH18695.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|311097066|gb|EFQ55301.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|319746688|gb|EFV98947.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|321143463|gb|EFX38900.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
          Length = 69

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  N  + +R    L Q E+    G ++  IS LE G+ T ++   I +A     P+  
Sbjct: 1  MILKNRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTPSVIIAITIAQIFKEPVEN 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|262374375|ref|ZP_06067650.1| conserved hypothetical protein [Acinetobacter junii SH205]
 gi|262310632|gb|EEY91721.1| conserved hypothetical protein [Acinetobacter junii SH205]
          Length = 101

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLW 78
          +     R  R   +++Q E+  R G   + +S LE G   ++++N++ +A  L     L 
Sbjct: 14 LLGERLRKQRLFLEMSQAEVAARAGVGVNTVSNLEAG-RNVSVENLVRIAMVLGRLNELQ 72

Query: 79 KLLKP 83
          +L KP
Sbjct: 73 ELFKP 77


>gi|228952477|ref|ZP_04114558.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228807214|gb|EEM53752.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
          Length = 114

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IR +  ++QKE+       +S IS  ET + + + +N   +A  L   +  LL
Sbjct: 4  LGERIKSIRTKKNISQKELAEALNVNRSAISLYETNRKSPSRENTYKIATVLGVSIDYLL 63


>gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1]
 gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1]
          Length = 116

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK +K+TQ+++ N  G ++  IS  E GK +   +++  +A         L
Sbjct: 1  MIGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131]
 gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131]
          Length = 103

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +N RKE  L+   + ++   +Q  IS  E G + I I++++ +A  L+ P+   
Sbjct: 6  IIGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNCPIEWF 65

Query: 81 LK 82
           +
Sbjct: 66 FQ 67


>gi|169334290|ref|ZP_02861483.1| hypothetical protein ANASTE_00688 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259007|gb|EDS72973.1| hypothetical protein ANASTE_00688 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 123

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF +N +  RK     QKEI        S  S  E GK   NI  +  +A  L+     L
Sbjct: 3  IFSDNLKKFRKLKNFKQKEIAEMLEIDTSTYSNYENGKREPNILTIKKIAKILNVSGDDL 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|126732539|ref|ZP_01748337.1| transcriptional regulator, putative [Sagittula stellata E-37]
 gi|126706985|gb|EBA06053.1| transcriptional regulator, putative [Sagittula stellata E-37]
          Length = 433

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 25/65 (38%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  +  R  R    + Q E+    G + S+++ +E  +  I    ++ +A  L  
Sbjct: 1  MPRDTLTGSRIREKRIAQGMRQSELAKIAGISASYLNLIEHNRRRIGGKLLLEIADALSV 60

Query: 76 PLWKL 80
              L
Sbjct: 61 EPTHL 65


>gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae
          3841]
 gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 192

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R+E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 14 GIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAALGLSL 68


>gi|24461679|gb|AAN62248.1|AF440524_35 putative transcriptional regulator [Pseudomonas aeruginosa]
          Length = 181

 Score = 47.7 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           RN R    ++ + +    G + S +S++ETGK+ + +   + +A  L  P  K L
Sbjct: 7  IRNQRNLKGISLRSLARELGISASQLSKIETGKAKLTVSVALKIADILQVPASKFL 62


>gi|325002595|ref|ZP_08123707.1| helix-turn-helix domain-containing protein [Pseudonocardia sp.
          P1]
          Length = 225

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW------K 79
           R +R+ A+L+Q+E+  RTG A+S I  +E+     ++D +  +       L       +
Sbjct: 21 VRAVRRRAELSQRELAERTGLARSTIGRIESRSLAPSLDTLSAILDVAGLRLVAVDQENR 80

Query: 80 LLKP 83
          L++P
Sbjct: 81 LVRP 84


>gi|313633852|gb|EFS00575.1| putative transcriptional regulator [Listeria seeligeri FSL
          N1-067]
          Length = 167

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75
          M   +  R +RK   +TQKE+    G+    A   I++ ETG  T  ID +  +A  L+ 
Sbjct: 1  MSVGSRIRRVRKFRDMTQKELGIALGYDEKSADVRITQYETGTRTPKIDVLNAMAEVLNV 60

Query: 76 PLWKLLKP 83
           +  L +P
Sbjct: 61 NVLSLKEP 68


>gi|311069952|ref|YP_003974875.1| transcriptional regulator [Bacillus atrophaeus 1942]
 gi|310870469|gb|ADP33944.1| transcriptional regulator [Bacillus atrophaeus 1942]
          Length = 151

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +     R  RK    +  ++    G ++S++S++E G     +I  +  ++ TL+  L +
Sbjct: 1  MIGRIIRLYRKRKGYSINQLAVEAGVSKSYLSKIERGVHTNPSIQFLKKVSETLEVELTE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|297570524|ref|YP_003691868.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
 gi|296926439|gb|ADH87249.1| transcriptional regulator, XRE family [Desulfurivibrio
          alkaliphilus AHT2]
          Length = 105

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             R  RK   LTQ  +  + G  QS IS++E GK  + + + + +A  LD    
Sbjct: 7  RKLRAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLDLEPV 61


>gi|257080321|ref|ZP_05574682.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          E1Sol]
 gi|256988351|gb|EEU75653.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          E1Sol]
          Length = 379

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER+IF      + R    LT KE+  +   ++  IS  E+GK+    D+++ L   L  P
Sbjct: 3  ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62


>gi|240851129|ref|YP_002972531.1| transcriptional regulator [Bartonella grahamii as4aup]
 gi|240268252|gb|ACS51840.1| transcriptional regulator [Bartonella grahamii as4aup]
          Length = 121

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     R  R   +L+QK + +  G +   I + E G + +++  ++ +A  L+ P+
Sbjct: 12 LIGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPM 68


>gi|229824149|ref|ZP_04450218.1| hypothetical protein GCWU000282_01453 [Catonella morbi ATCC
          51271]
 gi|229786503|gb|EEP22617.1| hypothetical protein GCWU000282_01453 [Catonella morbi ATCC
          51271]
          Length = 70

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 36/66 (54%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L++     +N R+IR++  +++  +  R G  ++ ++++E+G+  +N   + + A  L  
Sbjct: 2  LKDDHSVGSNIRDIREQLGISKVGLAERIGIHRNAVAKIESGERKLNQKGLKVFARALGV 61

Query: 76 PLWKLL 81
           +  +L
Sbjct: 62 TVQDIL 67


>gi|229547318|ref|ZP_04436043.1| zinc-binding Cro/CI family transcriptional regulator
          [Enterococcus faecalis TX1322]
 gi|256963086|ref|ZP_05567257.1| transcriptional regulator [Enterococcus faecalis HIP11704]
 gi|257420304|ref|ZP_05597294.1| zinc-binding transcriptional regulator [Enterococcus faecalis
          X98]
 gi|307272606|ref|ZP_07553857.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307274524|ref|ZP_07555705.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|312899748|ref|ZP_07759068.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|312953750|ref|ZP_07772582.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|229307557|gb|EEN73544.1| zinc-binding Cro/CI family transcriptional regulator
          [Enterococcus faecalis TX1322]
 gi|256953582|gb|EEU70214.1| transcriptional regulator [Enterococcus faecalis HIP11704]
 gi|257162128|gb|EEU92088.1| zinc-binding transcriptional regulator [Enterococcus faecalis
          X98]
 gi|306508796|gb|EFM77885.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306510708|gb|EFM79727.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|310628336|gb|EFQ11619.1| helix-turn-helix protein [Enterococcus faecalis TX0102]
 gi|311293100|gb|EFQ71656.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|315152739|gb|EFT96755.1| helix-turn-helix protein [Enterococcus faecalis TX0031]
 gi|315154567|gb|EFT98583.1| helix-turn-helix protein [Enterococcus faecalis TX0043]
 gi|315158937|gb|EFU02954.1| helix-turn-helix protein [Enterococcus faecalis TX0312]
 gi|315167131|gb|EFU11148.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
 gi|315171237|gb|EFU15254.1| helix-turn-helix protein [Enterococcus faecalis TX1342]
 gi|323479183|gb|ADX78622.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 379

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER+IF      + R    LT KE+  +   ++  IS  E+GK+    D+++ L   L  P
Sbjct: 3  ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62


>gi|191639822|ref|YP_001988988.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23]
 gi|190714124|emb|CAQ68130.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23]
 gi|327383933|gb|AEA55409.1| Transcriptional regulator, XRE family [Lactobacillus casei LC2W]
 gi|327387114|gb|AEA58588.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II]
          Length = 212

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  +  R+ A L+Q ++  +    +  IS  E G     +D    L+  L   +  L
Sbjct: 4  NRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYL 60


>gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 188

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R+E  LT  ++   +G +++ IS +E  +++     +  +   L   L
Sbjct: 10 GIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAALGLSL 64


>gi|158336692|ref|YP_001517866.1| XRE family transcriptional regulator [Acaryochloris marina
          MBIC11017]
 gi|158306933|gb|ABW28550.1| transcriptional regulator, XRE family [Acaryochloris marina
          MBIC11017]
          Length = 278

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          R+ RK  KL+Q ++      +Q  +S LETG+S  +   +  L+  ++ PL +
Sbjct: 14 RHWRKFRKLSQLDLALAANVSQRHVSWLETGRSHPSRAMVERLSEAMNIPLRE 66


>gi|22536732|ref|NP_687583.1| prophage LambdaSa1, Cro/CI family transcriptional regulator
          [Streptococcus agalactiae 2603V/R]
 gi|76799546|ref|ZP_00781676.1| transcription regulator [Streptococcus agalactiae 18RS21]
 gi|22533575|gb|AAM99455.1|AE014217_10 prophage LambdaSa1, transcriptional regulator, Cro/CI family
          [Streptococcus agalactiae 2603V/R]
 gi|76585097|gb|EAO61725.1| transcription regulator [Streptococcus agalactiae 18RS21]
          Length = 63

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
          N + +R++   TQ E+ ++   ++S +  LETG  S  +  ++  LA  LD  +  L 
Sbjct: 5  NLKQLREKKGFTQNELADKANVSRSLVVGLETGSYSETSTASLKKLAKALDVKIKDLF 62


>gi|331696794|ref|YP_004333033.1| helix-turn-helix domain-containing protein [Pseudonocardia
          dioxanivorans CB1190]
 gi|326951483|gb|AEA25180.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
          CB1190]
          Length = 152

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+ A L+ +E+ + T  + +++S++E G    ++  +  +A  L     +LL
Sbjct: 29 IRAQRQLANLSLREMASLTSVSNAYLSQVERGLHQPSLKVLRSIADALQLSTEQLL 84


>gi|325697167|gb|EGD39054.1| transcriptional regulator [Streptococcus sanguinis SK160]
          Length = 108

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I     +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIAFKIAHIFNENIENVFR 102


>gi|300786855|ref|YP_003767146.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299796369|gb|ADJ46744.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 264

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +   +       R  R   +++Q ++      +   +S +ETG+S  + D ++ L   LD
Sbjct: 2  VQPRQRPVGQLLREWRDRRRISQLDLAISADISTRHLSFVETGRSKPSRDMVLRLGEHLD 61

Query: 75 TPLWK 79
           PL +
Sbjct: 62 VPLRE 66


>gi|296128685|ref|YP_003635935.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296020500|gb|ADG73736.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 446

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               R+ R+ + L+Q ++        S++S LE G        +  LA  L  
Sbjct: 19 VSERIRDARERSGLSQADLARAAMMHPSYVSHLERGVRGPGDGALERLARALGV 72


>gi|260597511|ref|YP_003210082.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
 gi|260216688|emb|CBA30048.1| 26 kDa repressor protein [Cronobacter turicensis z3032]
          Length = 233

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPL 77
          RM   N  R +R    +   E+ +      + IS LETGK     +  +  LAH L   +
Sbjct: 2  RMNIGNRVRQLRLAKNMKIAELADAVEVDAANISRLETGKQKQFTEQTLNRLAHALGVTV 61

Query: 78 WKLLK 82
            L  
Sbjct: 62 ADLFT 66


>gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
          Length = 129

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+  +TQKE+    G +   +   E+G+ T   D +  +A   +  +  L
Sbjct: 1  MLGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQRTPPPDILQKIADFFNVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|227534195|ref|ZP_03964244.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
 gi|227188165|gb|EEI68232.1| transcriptional regulator [Lactobacillus paracasei subsp.
          paracasei ATCC 25302]
          Length = 73

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R+ R+  K++Q  +  + G A+  I+ +E  K   ++D  + LA TL T L  L 
Sbjct: 8  NRVRDYRRAQKMSQLALAEKIGVARQTINLIENSKYNPSLDLCLKLAWTLKTDLNTLF 65


>gi|227555210|ref|ZP_03985257.1| zinc-binding Cro/CI family transcriptional regulator
          [Enterococcus faecalis HH22]
 gi|256958526|ref|ZP_05562697.1| transcriptional regulator [Enterococcus faecalis DS5]
 gi|257078158|ref|ZP_05572519.1| transcriptional regulator [Enterococcus faecalis JH1]
 gi|257088416|ref|ZP_05582777.1| transcriptional regulator [Enterococcus faecalis D6]
 gi|257418088|ref|ZP_05595082.1| transcriptional regulator [Enterococcus faecalis T11]
 gi|294780734|ref|ZP_06746094.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|307270000|ref|ZP_07551325.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|307283890|ref|ZP_07564063.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|307288073|ref|ZP_07568089.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|307290765|ref|ZP_07570663.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|227175668|gb|EEI56640.1| zinc-binding Cro/CI family transcriptional regulator
          [Enterococcus faecalis HH22]
 gi|256949022|gb|EEU65654.1| transcriptional regulator [Enterococcus faecalis DS5]
 gi|256986188|gb|EEU73490.1| transcriptional regulator [Enterococcus faecalis JH1]
 gi|256996446|gb|EEU83748.1| transcriptional regulator [Enterococcus faecalis D6]
 gi|257159916|gb|EEU89876.1| transcriptional regulator [Enterococcus faecalis T11]
 gi|294452174|gb|EFG20616.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|306498185|gb|EFM67704.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306500951|gb|EFM70266.1| helix-turn-helix protein [Enterococcus faecalis TX0109]
 gi|306503540|gb|EFM72787.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306513665|gb|EFM82272.1| helix-turn-helix protein [Enterococcus faecalis TX4248]
 gi|315026105|gb|EFT38037.1| helix-turn-helix protein [Enterococcus faecalis TX2137]
 gi|315028652|gb|EFT40584.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315033008|gb|EFT44940.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315035227|gb|EFT47159.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
 gi|315147020|gb|EFT91036.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
 gi|315163543|gb|EFU07560.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
 gi|315574630|gb|EFU86821.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315580864|gb|EFU93055.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
 gi|327536374|gb|AEA95208.1| cro/CI family zinc-binding transcriptional regulator
          [Enterococcus faecalis OG1RF]
 gi|329577544|gb|EGG58980.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 379

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER+IF      + R    LT KE+  +   ++  IS  E+GK+    D+++ L   L  P
Sbjct: 3  ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62


>gi|187778017|ref|ZP_02994490.1| hypothetical protein CLOSPO_01609 [Clostridium sporogenes ATCC
          15579]
 gi|187774945|gb|EDU38747.1| hypothetical protein CLOSPO_01609 [Clostridium sporogenes ATCC
          15579]
          Length = 65

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE  + Q+E+ +    ++  IS LE G+   +I     +A   +  +  + 
Sbjct: 3  NKLEEIRKERGIKQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIF 60


>gi|111023714|ref|YP_706686.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110823244|gb|ABG98528.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 128

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R  R     T +E+ N    +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDALEVPLS 65

Query: 79 KLL 81
           +L
Sbjct: 66 DVL 68


>gi|313677582|ref|YP_004055578.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312944280|gb|ADR23470.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 87

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F +  + +R E  LTQ+++ +     +  +S +E   S  +I  +  L   L     
Sbjct: 15 KEYFADVLKEVRLEKGLTQQKLCDLANMERVVLSRIERKISFPSIPTLFRLCVVLGIKPS 74

Query: 79 KLLK 82
          +++K
Sbjct: 75 EIVK 78


>gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis
          BCM-HMP0060]
 gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis
          FRI909]
 gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus
          MRSA177]
          Length = 108

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+   TQ+E+  +   ++  IS+ E G S  ++  ++ L+         L
Sbjct: 1  MISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISEPDLIMLMQLSQLFSVSTDYL 60

Query: 81 LK 82
          + 
Sbjct: 61 IT 62


>gi|220919779|ref|YP_002495082.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
 gi|219952199|gb|ACL62590.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 204

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                 R +R+  KLT +++ +R+G + S +S++E  + +  +  +  +A   + 
Sbjct: 20 QSLGQRLRELRRSRKLTLQQVSDRSGISLSSLSKIERDELSPTVTTLERIAAGYEI 75


>gi|158317899|ref|YP_001510407.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113304|gb|ABW15501.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 277

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R+ A+++ +++  + G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  VGDFIREQRRGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67


>gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 132

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLW 78
          M F    R +R+   LTQ ++    G +   IS  E G+S      +   LA  LDT   
Sbjct: 1  MSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHD 60

Query: 79 KLLK 82
           L+ 
Sbjct: 61 YLVT 64


>gi|308175112|ref|YP_003921817.1| transcriptional repressor rghRB [Bacillus amyloliquefaciens DSM
          7]
 gi|307607976|emb|CBI44347.1| Transcriptional repressor rghRB [Bacillus amyloliquefaciens DSM
          7]
 gi|328555081|gb|AEB25573.1| Transcriptional repressor rghRB [Bacillus amyloliquefaciens
          TA208]
 gi|328913436|gb|AEB65032.1| Transcriptional repressor rghRB [Bacillus amyloliquefaciens LL3]
          Length = 143

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R+  KLT  ++   +G + + IS +E G         +  LA TL  P  +L
Sbjct: 4  FGKQLRELRRARKLTVNQLAVYSGVSSATISRIENGHRGIPKPATIKKLADTLKIPYEEL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|297560612|ref|YP_003679586.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
 gi|296845060|gb|ADH67080.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
          subsp. dassonvillei DSM 43111]
          Length = 272

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
             DA    ++ F    R +R +A LTQ+E+      +QS +S+LE GK     D ++ L
Sbjct: 2  QEEDADKAAQLRFGKLLRKLRGQAGLTQQELAALAVVSQSTVSDLERGKKGTRRDPVVRL 61

Query: 70 AHTL 73
             L
Sbjct: 62 DKAL 65


>gi|294787896|ref|ZP_06753140.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC
          29453]
 gi|294484189|gb|EFG31872.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC
          29453]
          Length = 72

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  R  R+    +Q+E+  R   A+  I+ +E  +    +   I LAH LDT L  L 
Sbjct: 3  ANQVRQYRQIKGWSQQELAQRIEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61


>gi|238892802|ref|YP_002917536.1| putative regulatory protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238545118|dbj|BAH61469.1| putative regulatory protein [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 75

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           + +   R+ R    +TQ+E+ +  G  QS+I+++E+G+  +++   + L   L+     
Sbjct: 10 QLVIKALRDARIACGITQQEVASAFGRPQSFIAKVESGERRLDVVEFVRLCRLLNIEPAS 69

Query: 80 LL 81
          +L
Sbjct: 70 IL 71


>gi|237795100|ref|YP_002862652.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|229262129|gb|ACQ53162.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 73

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82
           R +R +   TQ+ +  R G  Q +IS LE G+   + I  +  L+H L     KLL+
Sbjct: 1  MRKLRTKLGYTQETLGERIGVEQPYISRLENGEIEFMTIGKLKKLSHALQVHPVKLLE 58


>gi|224824341|ref|ZP_03697449.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224603760|gb|EEG09935.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 194

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++RK    + +++   +G ++S IS +E  +++     +  LA  L   L  L 
Sbjct: 7  LAKRIHSLRKSRAYSLEKLAELSGVSRSMISLIERAETSATAAVLNKLADALGVSLASLF 66


>gi|209966969|ref|YP_002299884.1| transcriptional regulator, Cro [Rhodospirillum centenum SW]
 gi|209960435|gb|ACJ01072.1| transcriptional regulator, Cro [Rhodospirillum centenum SW]
          Length = 191

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R R  P  S+             R  R    +TQ+E+  R G     + + E G + + +
Sbjct: 7  RGRRGPRQSEEDAAVSAALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAV 66

Query: 64 DNMIILAHTLDTPLWKLLK 82
            +I LA+ LDT    LL+
Sbjct: 67 PTLIKLANALDTTPADLLE 85


>gi|169826776|ref|YP_001696934.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
 gi|168991264|gb|ACA38804.1| transcriptional regulator [Lysinibacillus sphaericus C3-41]
          Length = 183

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 31/59 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            + IR++  L+  ++   TG +++ ++++E G++   +  +  +A  +      LL+P
Sbjct: 11 QLKKIRQQRHLSLDDVAKATGVSKAQLAQIEKGEANPTVSTIWKIAAGMRISFSSLLQP 69


>gi|78189814|ref|YP_380152.1| XRE family transcriptional regulator [Chlorobium chlorochromatii
          CaD3]
 gi|78172013|gb|ABB29109.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii
          CaD3]
          Length = 100

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           +  R E  LTQ+E+  + G  + +IS++E     + +  +  +   
Sbjct: 42 IQQARLEKGLTQEELAEKCGTNKGYISKIENNIKEVRVSTLQKIVEL 88


>gi|29377715|ref|NP_816869.1| zinc-binding Cro/CI family transcriptional regulator
          [Enterococcus faecalis V583]
 gi|29345183|gb|AAO82939.1| zinc-binding transcriptional regulator, Cro/CI family
          [Enterococcus faecalis V583]
          Length = 379

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER+IF      + R    LT KE+  +   ++  IS  E+GK+    D+++ L   L  P
Sbjct: 3  ERLIFNPKQLTSARIARGLTMKELAEKAELSRQMISNYESGKTIPKADSILKLISVLQFP 62


>gi|327439445|dbj|BAK15810.1| predicted transcriptional regulator [Solibacillus silvestris
          StLB046]
          Length = 133

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  ++ R + K +Q ++    G   + +SE E GK  I+ D +  +A  L+  +    
Sbjct: 11 GNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVLEAKVDDFF 69


>gi|326793847|ref|YP_004311667.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1]
 gi|326544611|gb|ADZ89831.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1]
          Length = 185

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           + +   + +  R +   +  E+      A+S +S++E G    +I+ +  L+  L+ P 
Sbjct: 8  AQRLISRSLQRERTKKGYSINELSKLAKVAKSTLSQIEAGSGNPSIETVWALSTALNVPF 67

Query: 78 WKLLKP 83
            L+ P
Sbjct: 68 SALMAP 73


>gi|325917947|ref|ZP_08180117.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325535849|gb|EGD07675.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 113

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTL 73
           R+IF N  R+ R++A+LTQ+ +    G     A++ I+  E G +  ++     LA  L
Sbjct: 6  ARLIFANRLRHARQKAELTQEALGVAAGLATEVARTRINRYEKGVNECDLRTAKRLADAL 65

Query: 74 DTPL 77
            PL
Sbjct: 66 GMPL 69


>gi|320014977|gb|ADV98548.1| putative DNA-binding phage-related protein [Yersinia pestis
          biovar Medievalis str. Harbin 35]
          Length = 107

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R++  LTQ+E+  R G  +  IS +E G  + N+  +   A  L 
Sbjct: 35 RQAMMTELKAARQQCNLTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 90


>gi|313637891|gb|EFS03212.1| transcriptional regulator, putative [Listeria seeligeri FSL
          S4-171]
          Length = 293

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R    LTQK I      A+S + ++E GK   + D + ++   L+T L +L+
Sbjct: 5  GTTLKKVRMAQNLTQKNIIGE-DLARSTLEKIENGKRNPSYDKITLICEKLNTSLPELI 62


>gi|238922497|ref|YP_002936010.1| hypothetical protein EUBREC_0071 [Eubacterium rectale ATCC 33656]
 gi|238874169|gb|ACR73876.1| Hypothetical protein EUBREC_0071 [Eubacterium rectale ATCC 33656]
          Length = 96

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R+IRK+  L  +E+  +TG + S + ++E G   +++ N+ +L    +T    LL
Sbjct: 2  IRDIRKDKGLLIEEVAAKTGISVSTLGQVEQGGRNLSMKNLYMLMEVYETDANSLL 57


>gi|238922230|ref|YP_002935744.1| hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC
          27750]
 gi|238873902|gb|ACR73610.1| Hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC
          27750]
          Length = 110

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                 + IR    L Q  + +      S IS +E  +  +++  +I + + L  
Sbjct: 11 ESIGKKLKEIRLSKGLPQDAVASVAEVNTSHISNIENNRVKVSLPTLIYICNALGV 66


>gi|256423759|ref|YP_003124412.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256038667|gb|ACU62211.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 111

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++R +   +Q ++ +++  ++  I + E G++  +ID    +A  L   L  L+
Sbjct: 4  GKIIADLRDKLAWSQTDLADKSSVSRVMIGKYERGEAVPSIDAAKRIADALGVSLDYLV 62


>gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
 gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
          Length = 224

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 34/59 (57%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             + +RK+   +Q+++ ++ G A+  +S+ E G++   ++ +I+L+      + +++K
Sbjct: 5  EKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIPELNGLILLSELYGVTIDRIVK 63


>gi|239629817|ref|ZP_04672848.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|301066939|ref|YP_003788962.1| putative transcriptional regulator [Lactobacillus casei str.
          Zhang]
 gi|239527429|gb|EEQ66430.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|300439346|gb|ADK19112.1| Predicted transcriptional regulator [Lactobacillus casei str.
          Zhang]
          Length = 67

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R+ R+  K++Q  +  + G A+  I+ +E GK   ++   + LA TL T L  L 
Sbjct: 2  NRVRDYRRAKKMSQLALAEKIGVARQTINLIENGKYNPSLALCLKLAWTLKTDLNSLF 59


>gi|239623531|ref|ZP_04666562.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239521562|gb|EEQ61428.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 115

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R+E  L+Q  +  + G     I  +E  +     + +  L   L  P  +
Sbjct: 6  KTLGTVIRKAREEQGLSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLITALRIPADR 65

Query: 80 LLKP 83
          +  P
Sbjct: 66 IFYP 69


>gi|77411971|ref|ZP_00788301.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae CJB111]
 gi|77161997|gb|EAO72978.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae CJB111]
          Length = 62

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++ R E K +Q  +    G ++  I+ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRVKDYRLETKKSQLALAKEIGVSRQTINMIENNKYNPSLDLCIKLAKALGTDLNALF 59


>gi|319902619|ref|YP_004162347.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108]
 gi|319417650|gb|ADV44761.1| helix-turn-helix domain protein [Bacteroides helcogenes P 36-108]
          Length = 105

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 7/74 (9%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PRR + E  +++       +     +  R+   LTQ+++    G  ++ IS++E+GKS +
Sbjct: 23 PRRNKYETDINN------FLIGEAIKQARESKNLTQEQLGELMGVQKAQISKIESGKS-V 75

Query: 62 NIDNMIILAHTLDT 75
              ++     +  
Sbjct: 76 TFSTIVRAFKAMGV 89


>gi|300854943|ref|YP_003779927.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300435058|gb|ADK14825.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 64

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RK+  L Q+++ N     +  I+ +E  K    ++  + LA  L+T + +L 
Sbjct: 3  NNIKVLRKQLGLRQEDVANALNVTRQTINAIENSKYNPTLELAMRLAKLLNTTVDELF 60


>gi|283833052|ref|ZP_06352793.1| DNA-binding protein [Citrobacter youngae ATCC 29220]
 gi|291070671|gb|EFE08780.1| DNA-binding protein [Citrobacter youngae ATCC 29220]
          Length = 178

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R + + +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|228906187|ref|ZP_04070075.1| hypothetical protein bthur0013_3710 [Bacillus thuringiensis IBL
          200]
 gi|228853444|gb|EEM98213.1| hypothetical protein bthur0013_3710 [Bacillus thuringiensis IBL
          200]
          Length = 65

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +F+   + +R E   T KE+    G  + +   +E GK     D ++ +A      L
Sbjct: 1  MFIKTLKQLRVEQGYTCKEVAEAVGITEVYYWYIENGKRRPYYDLIVKIAEFFKVKL 57


>gi|222825165|dbj|BAH22322.1| transcriptional regulator [Wolbachia endosymbiont of Cadra
          cautella]
          Length = 120

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 24/65 (36%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D             R  R    L+Q+++  +   +   I   ETG+  + +D +  LA  
Sbjct: 2  DTQHPIDKQIGERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEA 61

Query: 73 LDTPL 77
          L   +
Sbjct: 62 LSVDM 66


>gi|152986086|ref|YP_001345707.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150961244|gb|ABR83269.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 179

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  +TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60


>gi|30023288|ref|NP_834919.1| PbsX family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|29898849|gb|AAP12120.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC
          14579]
          Length = 63

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RK   L+Q E+  +   A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NNVKQYRKSEDLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59


>gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14]
          Length = 229

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  R E K  Q EI  + G  ++  S+ E+GKS  N  N+  +A  LD P
Sbjct: 4  GIRLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLSAIAKILDVP 57


>gi|291438420|ref|ZP_06577810.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341315|gb|EFE68271.1| regulatory protein [Streptomyces ghanaensis ATCC 14672]
          Length = 449

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R E  LTQK++     +  +++S LE+G+   + D +  LA  L     +
Sbjct: 10 ETIGRRVQKLRVERGLTQKQLAEPV-YTPAYVSTLESGRVRPSDDALRHLADRLGVAFDE 68

Query: 80 L 80
          L
Sbjct: 69 L 69


>gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 213

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 34/58 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +++RK   ++Q+++ +  G ++  +S+ E+G+S  +I+ +I+++         LLK
Sbjct: 6  RIQSLRKTKGISQEQLADELGVSRQAVSKWESGQSMPDIEKIILMSEYFKITTDYLLK 63


>gi|302520357|ref|ZP_07272699.1| regulatory protein [Streptomyces sp. SPB78]
 gi|302429252|gb|EFL01068.1| regulatory protein [Streptomyces sp. SPB78]
          Length = 284

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           R+   N  R +R++  +T + +    G+ +S IS +E GK+  ++ ++      
Sbjct: 10 ARIALGNRLRALRRQQGITARALAADCGWHESKISRVENGKALPSVQDLTKWTEA 64


>gi|271967718|ref|YP_003341914.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270510893|gb|ACZ89171.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 175

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R++F    R +R+ A+L+Q  + +R G  Q+ +S LE    T +  +   L     TP
Sbjct: 13 RVLFGTEMRRLREAAELSQVAVASRLGCTQTQVSRLEKATRTPSRSDAERLDRLFKTP 70


>gi|258515643|ref|YP_003191865.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257779348|gb|ACV63242.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 73

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++ N  R IRK   +T   +  + G +    S++E G+  ++ + +  +A  L+  + ++
Sbjct: 6  VYGNRIRKIRKAKGITSCYVAKKLGMSPGGYSDIERGRRKLSAERVEKIAKILEIDIGEI 65

Query: 81 L 81
           
Sbjct: 66 F 66


>gi|227549074|ref|ZP_03979123.1| transcription regulator [Corynebacterium lipophiloflavum DSM
          44291]
 gi|227078856|gb|EEI16819.1| transcription regulator [Corynebacterium lipophiloflavum DSM
          44291]
          Length = 123

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 3  RRKRDEPHLSDAI--LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +R  + P   +A+     R     + R  R +  ++ + +  +   +  +ISELE G+  
Sbjct: 17 KRPLERPVQREAVREPLLREALGMSLRAFRADKNVSLRTLAAKARVSSGYISELERGRKE 76

Query: 61 INIDNMIILAHTLDTPLWKLL 81
          ++ + +  +   LDT + ++L
Sbjct: 77 VSSELLASICEALDTTVAEVL 97


>gi|223983799|ref|ZP_03633967.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM
          12042]
 gi|223964238|gb|EEF68582.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM
          12042]
          Length = 83

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N    +RK   + Q+E+      ++  I  LE G+   +I     +A   D  + 
Sbjct: 14 RRFMKNRLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYFDVSIE 73

Query: 79 KLL 81
          ++ 
Sbjct: 74 EVF 76


>gi|170741746|ref|YP_001770401.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196020|gb|ACA17967.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46]
          Length = 207

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           L+ K I  RTG +  ++S++E G S+ ++  +  LA  L+  L  L 
Sbjct: 38 GLSLKAIAARTGLSIGFLSQVERGLSSPSLRVLTQLADLLEVGLASLF 85


>gi|160883371|ref|ZP_02064374.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483]
 gi|260172676|ref|ZP_05759088.1| hypothetical protein BacD2_12486 [Bacteroides sp. D2]
 gi|156111091|gb|EDO12836.1| hypothetical protein BACOVA_01340 [Bacteroides ovatus ATCC 8483]
          Length = 116

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +     +  R+   LTQ+++    G  ++ IS++E+GKS I+   ++     +      
Sbjct: 46  FLIGEAIKRAREAKNLTQEQLGELMGVKRAQISKIESGKS-ISFSTIVRAFKAMGVKTAS 104

Query: 80  L 80
           L
Sbjct: 105 L 105


>gi|71908183|ref|YP_285770.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Dechloromonas aromatica RCB]
 gi|71847804|gb|AAZ47300.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB]
          Length = 120

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  +K+D   L+            N    RK+   TQ+ +  R G     +S +E G   
Sbjct: 2  MAVKKKDSAGLAKH-------LGGNLCERRKQLGWTQEIVAERVGVDVETVSRIERGAHL 54

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           ++  +  LA  L      LL
Sbjct: 55 PSLPTLDRLAVALRCSAGDLL 75


>gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 208

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P     E    +             R +RK   LT  E+  ++     +IS+LE   +  
Sbjct: 9  PASAPPETGTDNQAPGGPQFLGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLAYP 68

Query: 62 NIDNMIILAHTLDT 75
          +I  +  +A +L  
Sbjct: 69 SIPALFNIARSLGV 82


>gi|119384106|ref|YP_915162.1| hypothetical protein Pden_1365 [Paracoccus denitrificans PD1222]
 gi|119373873|gb|ABL69466.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 477

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E++I     R +R+   LTQ ++    G + S+++ +E+ +   +   ++ LA   D  +
Sbjct: 5  EKLIIGQRLRVLRQSLGLTQAQMAAELGVSASYVTLIESDQRPASARFLMRLAEIYDLNI 64

Query: 78 WKL 80
           +L
Sbjct: 65 AEL 67


>gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3]
 gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3]
          Length = 189

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +   +   +G +++ I ++E G+S+    ++  LA   +  +  LL
Sbjct: 13 GARIRAERESRGWSLTNLAENSGVSRAMIHKIERGESSPTATSLAKLAGAFNLSMSALL 71


>gi|315226645|ref|ZP_07868433.1| transcriptional regulator [Parascardovia denticolens DSM 10105]
 gi|315120777|gb|EFT83909.1| transcriptional regulator [Parascardovia denticolens DSM 10105]
          Length = 189

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%)

Query: 10  HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           H  D+ +  R +     R++R +   T +EI  R G +  ++SE+E G+   + + +  +
Sbjct: 88  HQDDSEISLRKVQGGVLRSLRTKDHKTLREISERAGVSLGYLSEVERGQKEASSELLTSI 147

Query: 70  AHTLDTPLWKLL 81
              L   L  +L
Sbjct: 148 TEALGVRLSDML 159


>gi|293396430|ref|ZP_06640708.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
 gi|291421219|gb|EFE94470.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
          Length = 185

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                IR++  L+Q+ +   +G   S IS +E  K +  I  +  L       L
Sbjct: 9  GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSL 63


>gi|238921804|ref|YP_002935318.1| hypothetical protein EUBELI_20037 [Eubacterium eligens ATCC
          27750]
 gi|238873476|gb|ACR73184.1| Hypothetical protein EUBELI_20037 [Eubacterium eligens ATCC
          27750]
          Length = 97

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   +  +  
Sbjct: 32 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 91

Query: 80 LL 81
          + 
Sbjct: 92 VF 93


>gi|213019728|ref|ZP_03335533.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994769|gb|EEB55412.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 300

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G++ + +D +  +A  L   +  LL
Sbjct: 161 GKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 219



 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R E   TQK++  + G     I + E G   I+I+ +  +   L   +  L+
Sbjct: 9  VGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 68


>gi|168210270|ref|ZP_02635895.1| conserved domain protein [Clostridium perfringens B str. ATCC
          3626]
 gi|170711625|gb|EDT23807.1| conserved domain protein [Clostridium perfringens B str. ATCC
          3626]
          Length = 71

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  E++    N +  R +  LTQ+ +  + G     IS  E  +   +++ ++ LA  L
Sbjct: 2  KVKDEKVNLSKNLKENRLKKNLTQRALAEKCGLDFHTISLNENKERNSSLEIILRLALGL 61

Query: 74 DTPLWKLL 81
          +  L +LL
Sbjct: 62 NISLEELL 69


>gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
 gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1]
          Length = 113

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R  R+E  L+Q+++  +   ++  I  LE G  T ++  +  +A+ L   +  LL
Sbjct: 17 LGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGTPSLFTVRKVANALGETVSALL 76


>gi|255973582|ref|ZP_05424168.1| CylR2 [Enterococcus faecalis T2]
 gi|256959429|ref|ZP_05563600.1| CylR2 [Enterococcus faecalis DS5]
 gi|256960245|ref|ZP_05564416.1| CylR2 [Enterococcus faecalis Merz96]
 gi|257080295|ref|ZP_05574656.1| CylR2 [Enterococcus faecalis JH1]
 gi|257423074|ref|ZP_05600064.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|307277414|ref|ZP_07558507.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307285036|ref|ZP_07565186.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|307292300|ref|ZP_07572161.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312904701|ref|ZP_07763852.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|55670390|pdb|1UTX|A Chain A, Regulation Of Cytolysin Expression By Enterococcus
          Faecalis: Role Of Cylr2
 gi|55670391|pdb|1UTX|B Chain B, Regulation Of Cytolysin Expression By Enterococcus
          Faecalis: Role Of Cylr2
 gi|146386808|pdb|2GZU|A Chain A, High-Resolution Structure Determination Of The Cylr2
          Homodimer Using Intermonomer Distances From
          Paramagnetic Relaxation Enhancement And Nmr Dipolar
          Couplings
 gi|146386809|pdb|2GZU|B Chain B, High-Resolution Structure Determination Of The Cylr2
          Homodimer Using Intermonomer Distances From
          Paramagnetic Relaxation Enhancement And Nmr Dipolar
          Couplings
 gi|322812210|pdb|2XI8|A Chain A, High Resolution Structure Of Native Cylr2
 gi|322812211|pdb|2XI8|B Chain B, High Resolution Structure Of Native Cylr2
 gi|18139790|gb|AAL60140.1|AF394225_2 CylR2 [Enterococcus faecalis]
 gi|18104290|gb|AAL59476.1| putative transcription regulator [Enterococcus faecalis]
 gi|255966454|gb|EET97076.1| CylR2 [Enterococcus faecalis T2]
 gi|256949925|gb|EEU66557.1| CylR2 [Enterococcus faecalis DS5]
 gi|256950741|gb|EEU67373.1| CylR2 [Enterococcus faecalis Merz96]
 gi|256988325|gb|EEU75627.1| CylR2 [Enterococcus faecalis JH1]
 gi|257164898|gb|EEU94858.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|306496655|gb|EFM66211.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306502937|gb|EFM72197.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306505903|gb|EFM75080.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|310631956|gb|EFQ15239.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315163478|gb|EFU07495.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
 gi|329569606|gb|EGG51374.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 66

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 35/62 (56%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +NN + IR++ K++Q E+      ++  I+ +E  K   ++   + +A+ L+TPL  +
Sbjct: 1  MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDI 60

Query: 81 LK 82
           +
Sbjct: 61 FQ 62


>gi|300788126|ref|YP_003768417.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299797640|gb|ADJ48015.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 153

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R   + T ++I      +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 7  REAIGDRLRHARTNQRRTLRDISRAARVSLGYLSEVERGQKEASSELLASICQALDLPLG 66

Query: 79 KLL 81
          +LL
Sbjct: 67 ELL 69


>gi|299144547|ref|ZP_07037626.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298517635|gb|EFI41375.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 73

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    +RK   LTQ+E       ++  IS +E GK   ++D    +A   +  + ++  
Sbjct: 5  NKLDELRKINGLTQEEFAKELRVSRQTISAIENGKYNPSLDLAFEIALYFNKTIEEVFT 63


>gi|297161126|gb|ADI10838.1| hypothetical protein SBI_07718 [Streptomyces bingchenggensis
          BCW-1]
          Length = 295

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          ++   R+R +     R +R+ + L+  E     G  ++ +S +ETG++ I  + +  LA 
Sbjct: 5  ANPTQRQRRL-GEELRKLREASGLSATEAGAHVGLGRAHMSHIETGRTAIPEEKLRALAD 63

Query: 72 TLD 74
             
Sbjct: 64 VYG 66


>gi|227522962|ref|ZP_03953011.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227089780|gb|EEI25092.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 67

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK+ KL+Q  +  + G A+  I+ +E  K   +++  I +A  L T L  L 
Sbjct: 2  NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLF 59


>gi|222084616|ref|YP_002543145.1| transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221722064|gb|ACM25220.1| transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 265

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R     +Q ++   TG +Q  IS +E+G+ST    N++ LA  LD PL +
Sbjct: 5  LGPQLRAWRGTRGKSQLDLSLDTGISQRQISFIESGRSTPGRHNLLHLAEVLDVPLRE 62


>gi|126698959|ref|YP_001087856.1| putative phage repressor [Clostridium difficile 630]
 gi|254974905|ref|ZP_05271377.1| putative phage repressor [Clostridium difficile QCD-66c26]
 gi|255314032|ref|ZP_05355615.1| putative phage repressor [Clostridium difficile QCD-76w55]
 gi|255516712|ref|ZP_05384388.1| putative phage repressor [Clostridium difficile QCD-97b34]
 gi|260682969|ref|YP_003214254.1| putative phage repressor [Clostridium difficile CD196]
 gi|260686567|ref|YP_003217700.1| putative phage repressor [Clostridium difficile R20291]
 gi|306519912|ref|ZP_07406259.1| putative phage repressor [Clostridium difficile QCD-32g58]
 gi|115250396|emb|CAJ68218.1| Transcriptional regulator, Phage-type [Clostridium difficile]
 gi|260209132|emb|CBA62325.1| putative phage repressor [Clostridium difficile CD196]
 gi|260212583|emb|CBE03577.1| putative phage repressor [Clostridium difficile R20291]
          Length = 106

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +RKE  LTQ+E+  + G +Q  +   ET     +   +  LA   +  +  L
Sbjct: 1  MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|52078575|ref|YP_077366.1| putative transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|319648604|ref|ZP_08002818.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
 gi|52001786|gb|AAU21728.1| putative transcriptional regulator [Bacillus licheniformis ATCC
          14580]
 gi|317389371|gb|EFV70184.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
          Length = 69

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I+    R  RK    TQ+      G + S + E+E G        +  +A+TL+  +
Sbjct: 2  EAEIWGRRIRAYRKLKGYTQEGFAKALGISVSVLGEVERGNRMPTESMLRDVANTLNITV 61

Query: 78 WKL 80
           +L
Sbjct: 62 EEL 64


>gi|89095877|ref|ZP_01168771.1| DNA-binding protein [Bacillus sp. NRRL B-14911]
 gi|89089623|gb|EAR68730.1| DNA-binding protein [Bacillus sp. NRRL B-14911]
          Length = 68

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  N     R E K+TQ+E+ +  G ++  I  +E  +   ++   I +A  +D P+  
Sbjct: 2  KMLDNKISVYRAEKKMTQQELADAVGVSRQTILSIEKNRYNPSLILAIKIAKAVDKPIMD 61

Query: 80 LL 81
          + 
Sbjct: 62 VF 63


>gi|317508728|ref|ZP_07966381.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316252976|gb|EFV12393.1| hypothetical protein HMPREF9336_02753 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 137

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R+ A+++ +++  R G +  ++S++E G    +   M  +A  L      L
Sbjct: 18 GEFIRTQRELAQVSLRQLAQRAGVSNPYLSQIERGLRNPSAQVMGQIAKALRLSAEAL 75


>gi|300783560|ref|YP_003763851.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299793074|gb|ADJ43449.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 474

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 6/58 (10%), Positives = 25/58 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E+       R++R+   ++Q ++      + S+++++E     + +  ++ +      
Sbjct: 2  EKTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGV 59


>gi|302546464|ref|ZP_07298806.1| putative helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302464082|gb|EFL27175.1| putative helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 295

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  R+ A++TQ+E+ +  G     + ++E G    + D +  LA  L      LL
Sbjct: 5  LARRVAYRRRIARMTQQELADAAGVHVGTLRKIERGARGASDDVIEALAAALGVDPALLL 64


>gi|238917665|ref|YP_002931182.1| hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750]
 gi|238873025|gb|ACR72735.1| Hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750]
          Length = 185

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 3   RRKRDEPHLSDAILRER--MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
            R R     +  I  ER  ++   N   +R  A  TQ++I    G ++   ++ E G++ 
Sbjct: 20  GRIRIYKDYNTYITTERTDIMLQENLIMLRSFAGKTQEDIAEVIGISRQAYAKWERGETI 79

Query: 61  INIDNMIILAHTLDTPLWKLLK 82
            +I+    LA      +  L+K
Sbjct: 80  PDIEKCGRLAEFYGVTMDSLIK 101


>gi|228907416|ref|ZP_04071274.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200]
 gi|228852277|gb|EEM97073.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200]
          Length = 404

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++       +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|240146357|ref|ZP_04744958.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82]
 gi|257201519|gb|EEU99803.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82]
          Length = 113

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R + + +Q+ + +  G +   +S +E GK+ +++  +I +A+ LDT L  L+
Sbjct: 9  GMRIKERRTKKEWSQEMLASTVGNSNPHMSNIEWGKTKVSLATLIDIANALDTTLDALI 67


>gi|225574085|ref|ZP_03782696.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM
          10507]
 gi|225038685|gb|EEG48931.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM
          10507]
          Length = 153

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N+  + RK+  L+Q+++  + G ++  IS+ ET ++  +I     +A   +  L +L+
Sbjct: 3  LGNSLFHARKKRGLSQEDVAEKLGVSRQTISKWETNETVPDIYQSKRMAMLYNMSLDELI 62


>gi|111017888|ref|YP_700860.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110817418|gb|ABG92702.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 211

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R     +   +  R   + S +S +ETG   I +D ++ +A  L T L +L++
Sbjct: 31 QRIRGLRLARGWSLDVLAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTLDQLVE 89


>gi|30265281|ref|NP_847658.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47530816|ref|YP_022165.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49188093|ref|YP_031346.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|118480295|ref|YP_897446.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870026|ref|ZP_02214683.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167636539|ref|ZP_02394835.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167641808|ref|ZP_02400049.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170689396|ref|ZP_02880588.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170708952|ref|ZP_02899384.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177654077|ref|ZP_02936087.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190567768|ref|ZP_03020680.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196045702|ref|ZP_03112932.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225867228|ref|YP_002752606.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227818018|ref|YP_002818027.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229603683|ref|YP_002869472.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254686321|ref|ZP_05150180.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254724317|ref|ZP_05186101.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254735184|ref|ZP_05192893.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254744390|ref|ZP_05202070.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254755692|ref|ZP_05207725.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254759577|ref|ZP_05211602.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30259959|gb|AAP29144.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47505964|gb|AAT34640.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182020|gb|AAT57396.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|118419520|gb|ABK87939.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164714349|gb|EDR19869.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167510220|gb|EDR85625.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167528071|gb|EDR90871.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170126117|gb|EDS95012.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170666623|gb|EDT17394.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172080960|gb|EDT66039.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190561184|gb|EDV15157.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196023533|gb|EDX62210.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225788303|gb|ACO28520.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|227006050|gb|ACP15793.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229268091|gb|ACQ49728.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 63

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RK   L+Q E+  R   A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59


>gi|134298755|ref|YP_001112251.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051455|gb|ABO49426.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 77

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
            N   +R+    +Q+++   +   QS IS +E G      ++ +  LA  L+  + +LL
Sbjct: 7  GENVIKLREAKNWSQQDLEEASKVPQSSISRIEKGLLRNPGVETVRKLATALNVSVAELL 66

Query: 82 K 82
          +
Sbjct: 67 E 67


>gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis
          subsp. lactis CV56]
          Length = 107

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RK   L+Q+E+  +   ++  IS+ ETGKS      +I+L+   D  L  LLK
Sbjct: 7  IKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTGQIILLSEIFDCSLDTLLK 63


>gi|325570645|ref|ZP_08146371.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus ATCC 12755]
 gi|325156491|gb|EGC68671.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus ATCC 12755]
          Length = 281

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F  N R+IR + K+TQK +      +QS +S +E  +   N+  M  +   L   L +
Sbjct: 6  ESFGQNIRSIRLKRKMTQKMLAEDI-CSQSVLSRIENNEELPNVWVMYQICQRLGVTLDQ 64

Query: 80 LL 81
          ++
Sbjct: 65 VM 66


>gi|319948414|ref|ZP_08022553.1| putative transcription regulator [Dietzia cinnamea P4]
 gi|319437918|gb|EFV92899.1| putative transcription regulator [Dietzia cinnamea P4]
          Length = 104

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P    A    R       R +R E+  T +++ +    +  ++SE+E G+   + + +  
Sbjct: 12 PDQPGATPLLRETLGTVLRGLRGESGRTLRDVADAARVSPGYLSEIERGRKEASSELLAS 71

Query: 69 LAHTLDTPLWKLL 81
          ++  L+  L ++L
Sbjct: 72 ISGALEVSLGEIL 84


>gi|315274405|ref|ZP_07869367.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          marthii FSL S4-120]
 gi|313615952|gb|EFR89134.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          marthii FSL S4-120]
          Length = 111

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  +    +  IS  E G    N D +  LA   +  L  
Sbjct: 5  KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|310659212|ref|YP_003936933.1| hypothetical protein CLOST_1908 [Clostridium sticklandii DSM 519]
 gi|308825990|emb|CBH22028.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 63

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R E  + Q ++    G  +  I  +E G     ++  I +   L+  L  L 
Sbjct: 1  MKIARIECDMNQADLAKLVGVTRQTIGLIEAGDYNPTLNLCIAICKALNKTLNDLF 56


>gi|316932209|ref|YP_004107191.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315599923|gb|ADU42458.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 231

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + + R+        + IRK  KLTQ+ + +  G     I ++E+G+   +   +  +A  
Sbjct: 2  ETMERDPAYIAEQVKFIRKMHKLTQENLADAAGLTTRTIEKIESGRHRPDEQTLRSIARA 61

Query: 73 LDTPLWKLLKP 83
          +   +    KP
Sbjct: 62 MQIDVRYFEKP 72


>gi|239930398|ref|ZP_04687351.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438754|ref|ZP_06578144.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341649|gb|EFE68605.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 275

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
             L   +   R +     R +R++   +  ++ + +G+ +S++S LE+G+    +  M 
Sbjct: 2  TEQLDAHVESGRAVLGRTLRFLREKEGKSLGQLADASGYDKSYLSRLESGQRLSKVTVME 61

Query: 68 IL-----AHTLDTPLWKLLK 82
           L     A  L   LWK+ +
Sbjct: 62 DLDTYYGAGGLLVSLWKVAR 81


>gi|323340979|ref|ZP_08081228.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644]
 gi|323091641|gb|EFZ34264.1| UDP-glucose 6-dehydrogenase [Lactobacillus ruminis ATCC 25644]
          Length = 493

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK   +TQ+E+ ++ G  ++ +S LE      +I  +  LA  LD     L 
Sbjct: 17 RKAKNMTQQELSDKVGINRALLSRLEQQDFMPSIPQLENLAEVLDFEPSDLF 68


>gi|254476225|ref|ZP_05089611.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214030468|gb|EEB71303.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 207

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK    T +   N+ G A+S +S++E G+ +   + +  LA  L   + +L 
Sbjct: 27 LGARVRELRKARDWTLEYAANQAGLARSTLSKIENGQMSPTYEALKKLAEGLQITIPQLF 86

Query: 82 K 82
           
Sbjct: 87 T 87


>gi|167761064|ref|ZP_02433191.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC
          35704]
 gi|167661298|gb|EDS05428.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC
          35704]
          Length = 71

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 21/58 (36%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R    ++Q+ +  +    +  I  +E GK   ++   I +   L   L  L 
Sbjct: 4  KKMKMARLSLDMSQEMLAAKVDVTRQTIGMIEAGKFNPSLKLCIAICKVLHVTLDDLF 61


>gi|119960859|ref|YP_947357.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119947718|gb|ABM06629.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 113

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R++R+    T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 5  RHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICTALDVPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 HMLR 68


>gi|220929560|ref|YP_002506469.1| XRE family transcriptional regulator [Clostridium cellulolyticum
           H10]
 gi|219999888|gb|ACL76489.1| transcriptional regulator, XRE family [Clostridium cellulolyticum
           H10]
          Length = 206

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 13  DAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            ++   R    F    + +R+   ++Q+++    G  ++ I+  ET ++    +N+  LA
Sbjct: 121 KSVEHSRKEGSFGIRLKRLRRIHNISQEDLGKVLGVGRTAIANWETNQTEPTGENIKKLA 180

Query: 71  HTLDTPLWKLL 81
                    LL
Sbjct: 181 ELFRVTTDYLL 191


>gi|91783258|ref|YP_558464.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91687212|gb|ABE30412.1| Putative transcriptional regulator, XRE family [Burkholderia
          xenovorans LB400]
          Length = 106

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M      +  R+ A L+Q ++  R G  +  ISE+E G+  +  D + + A   D  
Sbjct: 1  MSIAERLKEAREIAGLSQGQVAKRLGMHRPTISEIEAGRRKVAADELDLFAELYDVS 57


>gi|86356364|ref|YP_468256.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
 gi|86280466|gb|ABC89529.1| putative transcriptional regulator protein [Rhizobium etli CFN
          42]
          Length = 469

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|52140306|ref|YP_086523.1| transcriptional regulator, DNA-binding protein [Bacillus cereus
          E33L]
 gi|196039476|ref|ZP_03106781.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|301056723|ref|YP_003794934.1| DNA-binding transcriptional regulator [Bacillus anthracis CI]
 gi|51973775|gb|AAU15325.1| transcriptional regulator, DNA-binding protein [Bacillus cereus
          E33L]
 gi|196029636|gb|EDX68238.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|300378892|gb|ADK07796.1| transcriptional regulator, DNA-binding protein [Bacillus cereus
          biovar anthracis str. CI]
 gi|324329202|gb|ADY24462.1| DNA-binding transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 63

 Score = 47.7 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  RK   L+Q E+  R   A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59


>gi|322832298|ref|YP_004212325.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602]
 gi|321167499|gb|ADW73198.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602]
          Length = 185

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  ++Q++    +G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLSEIRQQLGMSQRKAAELSGLTHSAISTIEQDKVSPAVSTLQKLLRVYGLSLSEFF 67


>gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 116

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R E   +Q +   + G +    S++E G + +++  +  +A  LD  + +LL
Sbjct: 4  LGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIVELL 63


>gi|295102882|emb|CBL00427.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii L2-6]
          Length = 233

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  +TQK+     G +Q+ +S  E G     +D ++ +A   +     LL
Sbjct: 3  FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62


>gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 67

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++RK+  L+Q+E+  + G ++  I+ +E  K    +     LA  L T +  L 
Sbjct: 9  IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDPTLALAFHLAKELQTTVDNLF 64


>gi|260654993|ref|ZP_05860481.1| toxin-antitoxin system, antitoxin component, Xre family
           [Jonquetella anthropi E3_33 E1]
 gi|260630308|gb|EEX48502.1| toxin-antitoxin system, antitoxin component, Xre family
           [Jonquetella anthropi E3_33 E1]
          Length = 187

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 28  NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R+E  L+Q+++   +G  Q  I+ +E G+    ID +I L   L   L
Sbjct: 129 RARRELGLSQRKLEEMSGVKQPVIARMELGEINPQIDTVIKLLVPLGKTL 178


>gi|257791280|ref|YP_003181886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257475177|gb|ACV55497.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 139

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R+   +TQ+++  R G   + I   E G+  +    +  +A  L      L+
Sbjct: 4  GSRIRALRESRGMTQRQLAERAGCTDAAIRNYEAGRRALKGSALDAIAGALGVAPEALM 62


>gi|326204985|ref|ZP_08194836.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
           2782]
 gi|325984851|gb|EGD45696.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
           2782]
          Length = 206

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 13  DAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            ++   R    F    + +R+   ++Q+E+    G  ++ I+  ET ++    +N+  LA
Sbjct: 121 KSVEHSRKEGSFGIRLKRLRRIHNISQEELGKVLGVGRTAIANWETNQTEPTGENIKKLA 180

Query: 71  HTLDTPLWKLL 81
                    LL
Sbjct: 181 ELFRVTTDYLL 191


>gi|239998665|ref|ZP_04718589.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
 gi|240013798|ref|ZP_04720711.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
 gi|240116013|ref|ZP_04730075.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
 gi|240117623|ref|ZP_04731685.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
 gi|240125430|ref|ZP_04738316.1| putative phage associated protein [Neisseria gonorrhoeae
          SK-92-679]
 gi|260440861|ref|ZP_05794677.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
          Length = 89

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             F ++R +   TQ E+    G  Q ++S +E  K ++    +  LA+ L     ++
Sbjct: 18 GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 75


>gi|239817789|ref|YP_002946699.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804366|gb|ACS21433.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 173

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           A+++  E+   +G + S +S +E G  + +++ +  LA  L  P  +  
Sbjct: 2  AAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 51


>gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a]
 gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a]
          Length = 215

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
           I     +++R+   L+Q ++    G+A  S +   E G   ++ D+ ++L   L     
Sbjct: 6  EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 65

Query: 79 KLL 81
          K++
Sbjct: 66 KIM 68


>gi|218960459|ref|YP_001740234.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans]
 gi|167729116|emb|CAO80027.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans]
          Length = 240

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR+   + Q ++        S IS++E+G++  +++ +  L    +  L  L
Sbjct: 1  MIGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTNPSLETLSELVVNYNVNLHWL 60

Query: 81 LK 82
          + 
Sbjct: 61 IT 62


>gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia
          coli O157:H7 EDL933]
 gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia
          coli O157:H7 str. EDL933]
          Length = 215

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
           I     +++R+   L+Q ++    G+A  S +   E G   ++ D+ ++L   L     
Sbjct: 6  EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 65

Query: 79 KLL 81
          K++
Sbjct: 66 KIM 68


>gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai]
 gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
 gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai]
 gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str.
          Sakai]
 gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501]
 gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str.
          1044]
          Length = 212

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
           I     +++R+   L+Q ++    G+A  S +   E G   ++ D+ ++L   L     
Sbjct: 3  EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 62

Query: 79 KLL 81
          K++
Sbjct: 63 KIM 65


>gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019]
 gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019]
          Length = 215

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLW 78
           I     +++R+   L+Q ++    G+A  S +   E G   ++ D+ ++L   L     
Sbjct: 6  EIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPA 65

Query: 79 KLL 81
          K++
Sbjct: 66 KIM 68


>gi|330824553|ref|YP_004387856.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329309925|gb|AEB84340.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 101

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R+ R    + Q+ + +  G  +S + ++E G+ T  +  ++ +A  L      L+
Sbjct: 25 FGAAVRDERTSQGIAQETLAHLAGIERSHVGKIERGEHTPTLPLILKIARALKCSSAHLM 84


>gi|329937113|ref|ZP_08286742.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
 gi|329303720|gb|EGG47605.1| DNA-binding protein [Streptomyces griseoaurantiacus M045]
          Length = 207

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R  A LT +        + + +S LETG    ++  ++ LA    T + +LL
Sbjct: 19 VAPQLRALRHHAGLTLESAARAADLSPAHLSRLETGHRQPSLPVLLTLARVYGTTVSELL 78


>gi|307329633|ref|ZP_07608791.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306884691|gb|EFN15719.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 430

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RK    +Q  +  R G + S +S++E G   +       LA  +   L +LL
Sbjct: 10 GANVAVCRKARGFSQVALARRAGVSVSLLSKIEVGDRALTQGIAAALAQAMGLTLDELL 68


>gi|269976760|ref|ZP_06183735.1| transcriptional regulator [Mobiluncus mulieris 28-1]
 gi|306818115|ref|ZP_07451846.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
 gi|269934957|gb|EEZ91516.1| transcriptional regulator [Mobiluncus mulieris 28-1]
 gi|304649079|gb|EFM46373.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
          Length = 65

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          NN   +RK+A  +Q+++    G ++  +  +E G+   ++     +A T +  +  +  P
Sbjct: 3  NNLVTLRKQAGWSQEKLAELLGVSRQTVISIEKGRFDPSLPLAFTIAKTFNCKIEDIFTP 62


>gi|260888022|ref|ZP_05899285.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|330838504|ref|YP_004413084.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
 gi|260862273|gb|EEX76773.1| toxin-antitoxin system, antitoxin component, Xre family
          [Selenomonas sputigena ATCC 35185]
 gi|329746268|gb|AEB99624.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC
          35185]
          Length = 202

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           IF    + +RK+A LTQ ++      +Q+ IS  ETG    + D +  L+   + 
Sbjct: 4  KIFSTKLKYLRKKANLTQVQLAEMLHISQAQISRYETGLDEPSEDCLQALSSAFEI 59



 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P   +D    +         F    R IR+    +QK+     G +QS IS LE GK+T
Sbjct: 72  LPDIPKDSSDGTS------ENFARRLRAIRQYHGKSQKDFAQFLGISQSLISALEIGKAT 125

Query: 61  INIDNMIILAH 71
            ++  +  L  
Sbjct: 126 PDLVLIQKLGK 136


>gi|284033167|ref|YP_003383098.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283812460|gb|ADB34299.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 415

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          F    R  R+ A L+ +++  R G+  S++S++E G+   + D +  L  
Sbjct: 6  FGVQLRRSRQAAALSLRQLATRVGYDHSYLSQVERGRRPGSAD-LAQLCD 54


>gi|268592006|ref|ZP_06126227.1| MrfJ protein [Providencia rettgeri DSM 1131]
 gi|291312398|gb|EFE52851.1| MrfJ protein [Providencia rettgeri DSM 1131]
          Length = 101

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  RKE  +T K++      +Q  +S  ETG S++++D +  +   LD    +++
Sbjct: 10 VGNYLRKSRKEKNMTGKQLAELINISQQQVSRYETGSSSLSLDQLNEILTVLDKRWIEMI 69


>gi|126731204|ref|ZP_01747012.1| transcriptional regulator, XRE family protein [Sagittula stellata
          E-37]
 gi|126708506|gb|EBA07564.1| transcriptional regulator, XRE family protein [Sagittula stellata
          E-37]
          Length = 464

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       R +R E   TQ ++    G + S+++ LE  + ++++  ++ L      
Sbjct: 2  KTFIGPRLRRLRIEHGQTQVQMAKELGISTSYVNLLEKNERSVSVPVLLKLFEAYGV 58


>gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1]
 gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH
          domain [Thermococcus kodakarensis KOD1]
          Length = 65

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+E  LTQ+E+    G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGLNIEDIF 60


>gi|186687142|ref|YP_001870285.1| XRE family transcriptional regulator [Nostoc punctiforme PCC
          73102]
 gi|186469445|gb|ACC85244.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC
          73102]
          Length = 116

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+Q E+  +TG++   I ++E G+ ++I  D +      L+     +L+
Sbjct: 6  KLKKTREAKGLSQNELARKTGYSLQNIQKIEQGRAASITFDALGRFCEVLECQPGDILE 64


>gi|333024924|ref|ZP_08452988.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
 gi|332744776|gb|EGJ75217.1| putative DNA-binding protein [Streptomyces sp. Tu6071]
          Length = 266

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  + +Q+E+ +R+G +   +S +ETGK+    + ++ L+  LD PL +
Sbjct: 5  LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPLRE 58


>gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus
          johnsonii DPC 6026]
          Length = 288

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK+  L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|317470678|ref|ZP_07930063.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp.
          3_2_56FAA]
 gi|316901813|gb|EFV23742.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp.
          3_2_56FAA]
          Length = 191

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R ++KL+Q E+  +    +  IS  E GK+  ++ ++++L+      L  L+
Sbjct: 3  FSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|312865005|ref|ZP_07725233.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311099116|gb|EFQ57332.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 69

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R+  KL+Q  +    G A+  I+ +E GK   +++  I LA +LDT L  L 
Sbjct: 2  NRVKEFRQLKKLSQLALAREIGVARQTINLIENGKYNPSLELCIKLAKSLDTDLNSLF 59


>gi|257792106|ref|YP_003182712.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476003|gb|ACV56323.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 63

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  A L+Q ++    G  +  I  +E G     +   I +  TL   L  L 
Sbjct: 1  MKAARVAADLSQADLAAAVGATRQTIGLIEAGGYNPTLKLCIAICKTLGCTLDDLF 56


>gi|271966081|ref|YP_003340277.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM
          43021]
 gi|270509256|gb|ACZ87534.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM
          43021]
          Length = 224

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  R+   L ++++ NR G A ++++ +E   +   I+ +  LA  LDT   +LL
Sbjct: 11 LGRRITRRRESLGLDREQLANRAGIAPAYLAYVEQRAAAPAIETINRLACALDTSTAELL 70


>gi|229084745|ref|ZP_04217007.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44]
 gi|228698561|gb|EEL51284.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE +LTQ E+   +   +S +S++E GK+T ++  +  LA  L+     LL
Sbjct: 4  LGEKIKALRKEKRLTQTELAG-SELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229150820|ref|ZP_04279032.1| Transcriptional regulator (Phage-related) protein [Bacillus
          cereus m1550]
 gi|228632609|gb|EEK89226.1| Transcriptional regulator (Phage-related) protein [Bacillus
          cereus m1550]
          Length = 138

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +RK   L Q+++      ++S     E G++  ++D++  LA   D  +  LL
Sbjct: 11 ERLKRLRKLHNLKQRDVAEYLDISESAYGYYEQGRNEPSLDSVRKLAEKYDVSVSYLL 68


>gi|212709326|ref|ZP_03317454.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens
          DSM 30120]
 gi|212688238|gb|EEB47766.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens
          DSM 30120]
          Length = 112

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 9  PHLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           +  +    E  I+        R IRK    +  +I  + G +Q   S  E GK  I++D
Sbjct: 2  KNADEDSKPESNIYSFIIGKELRCIRKRKGFSGAKIAKQLGISQQHYSRYECGKCRISVD 61

Query: 65 NMIILAHTLD 74
           ++ +   LD
Sbjct: 62 TLLSILFVLD 71


>gi|190570720|ref|YP_001975078.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190356992|emb|CAQ54381.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 279

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R   + TQK++ ++ G     I E E G + I  D +  +A  L   +  LL
Sbjct: 170 GQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYEMAGALSVNIKVLL 228



 Score = 41.1 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + R   + TQ E+ ++ G A   ++  E G   I I+ + ++A  L   +  LL
Sbjct: 16 GQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLYVIARVLSVNVVDLL 74


>gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM
          17241]
 gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM
          17241]
          Length = 132

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++          RKE  LTQ ++          +S+ E G+   ++  +  L   L   L
Sbjct: 2  DQKKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRGMPDVSLLQPLCDALGISL 61

Query: 78 WKLL 81
           +L 
Sbjct: 62 NELF 65


>gi|325002546|ref|ZP_08123658.1| Xre family DNA-binding protein [Pseudonocardia sp. P1]
          Length = 117

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R  R E + T ++I      +  ++SE+E G+   + + +  +   L   + 
Sbjct: 4  REAIGSGLRQARTERRRTLRDISRAARVSLGYLSEVERGRKEPSSELLAAICEALGISVP 63

Query: 79 KLLK 82
           LL 
Sbjct: 64 DLLT 67


>gi|319745678|gb|EFV97977.1| DNA-binding protein [Streptococcus agalactiae ATCC 13813]
          Length = 197

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|310830889|ref|YP_003965990.1| hypothetical protein PPSC2_p0533 [Paenibacillus polymyxa SC2]
 gi|309250356|gb|ADO59922.1| hypothetical protein PPSC2_p0533 [Paenibacillus polymyxa SC2]
          Length = 83

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
          F       RKE K +  ++ N+TG  +S+++ LE G +S  +   +  L   L   L  +
Sbjct: 19 FGYWVEAKRKELKFSLDDLANKTGIDKSYLARLERGDRSNPSFIAVYSLTKCLGGNLDDI 78

Query: 81 LK 82
          + 
Sbjct: 79 IT 80


>gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella
          paludicola SANAE]
 gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella
          paludicola SANAE]
          Length = 63

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    +TQ+++  + G ++  I+ +ETGK   ++     LA   +T +  L 
Sbjct: 3  NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYDPSLPLAFKLARCFETNIEHLF 60


>gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus
          ATCC 33331]
          Length = 509

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
 gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM
          12442]
          Length = 116

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK  K+TQ+++ N  G ++  IS  E GK +   +++  +A         L
Sbjct: 1  MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|219856549|ref|YP_002473671.1| hypothetical protein CKR_3206 [Clostridium kluyveri NBRC 12016]
 gi|219570273|dbj|BAH08257.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 82

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +N R +  L+Q+E+  R    +++IS LE  K    ++ +  +   L+ 
Sbjct: 17 LKNNRLKCGLSQEELAYRCELDRTYISLLEREKRKPTLNVIFKICENLNI 66


>gi|218289095|ref|ZP_03493331.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218240678|gb|EED07857.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 391

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R +R+E KLTQ ++      +++ IS  E+G+ T + + +  +A  L  
Sbjct: 5  FATTLRMLREEKKLTQADLAG-GHLSRTIISLYESGRKTPSYEAIKHIAERLGV 57


>gi|254423403|ref|ZP_05037121.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
 gi|196190892|gb|EDX85856.1| 4Fe-4S binding domain protein [Synechococcus sp. PCC 7335]
          Length = 533

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +  ++    R+  KL+Q+ +  R G +QSW+ ++E G+  ++ D+  +L   LD
Sbjct: 478 KLSGSDINLARQRQKLSQRSLAERLGKSQSWVRDIENGRFKVSRDDQALLRKELD 532


>gi|145299927|ref|YP_001142768.1| DNA-binding transcriptional repressor PuuR [Aeromonas salmonicida
          subsp. salmonicida A449]
 gi|142852699|gb|ABO91020.1| transcriptional regulator [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 187

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                    R+   L+Q+ +   +G     I  +E  K + ++ ++  L +  + PL +
Sbjct: 9  KSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLNVYELPLSR 68

Query: 80 LL 81
            
Sbjct: 69 FF 70


>gi|147678779|ref|YP_001212994.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
 gi|146274876|dbj|BAF60625.1| hypothetical transcriptional regulator [Pelotomaculum
          thermopropionicum SI]
          Length = 97

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNI-------------RKEAKLTQKEIRNRTGFA 47
          MP R+ D   +          F   +R               RKE  +TQK++ ++ G  
Sbjct: 3  MPFREVDISKIIKQKCESDPEFSRAYRQASAELDLIAQIIKTRKEKGMTQKDVADKAGLT 62

Query: 48 QSWISELETGKSTINIDNMIILAHTLD 74
          Q  +S +E+ +   N  N++ +A  LD
Sbjct: 63 QQMVSRIESREHLPNYRNLVKIADALD 89


>gi|90962813|ref|YP_536728.1| transcriptional regulator [Lactobacillus salivarius UCC118]
 gi|301299968|ref|ZP_07206194.1| helix-turn-helix protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|90822007|gb|ABE00645.1| Transcriptional regulator [Lactobacillus salivarius UCC118]
 gi|300852423|gb|EFK80081.1| helix-turn-helix protein [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 123

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  NN  ++RK+  ++Q  + ++ G  +  I +LE G   ++I+ +I L+     P+  
Sbjct: 8  KVLKNNIISLRKKYHVSQIALADKLGVGRDAIIKLENGTRRLSINELIKLSDFFKVPIND 67

Query: 80 LL 81
          L+
Sbjct: 68 LI 69


>gi|53714235|ref|YP_100227.1| hypothetical protein BF2945 [Bacteroides fragilis YCH46]
 gi|253564751|ref|ZP_04842207.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766272|ref|ZP_06094313.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52217100|dbj|BAD49693.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|251946216|gb|EES86593.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253940|gb|EEZ25405.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 104

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 5  KRDEPHLSD-AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          ++D P            +     +  R+   LTQ+E+ N  G  ++ IS +E GK  +  
Sbjct: 19 EKDTPKRDKFEADLHSFLIGEAIKQARQSKNLTQEELGNLIGVQRAQISRIENGK-NLTF 77

Query: 64 DNMIILAHTLDTP 76
            +  +   +   
Sbjct: 78 STISRVFKAMGIS 90


>gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC
          13129]
 gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae]
          Length = 99

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER I+ N  R +R E  +++ ++          I  LE G  + ++D  + +    + P+
Sbjct: 20 ERTIY-NRIRVLRTERDMSRAQLAELVDVNPQTIGALERGDHSPSLDLALRICDVFNLPI 78

Query: 78 WKLL 81
            + 
Sbjct: 79 EAIF 82


>gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
          Length = 210

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 28/55 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           + +R+     Q E+ +R G ++S ++ +E G+S   ++  I +A      + +L
Sbjct: 8  IKELRERRGWPQTELADRAGISRSSLATIEIGRSVPKVETSIKIAKVFGMTVEEL 62


>gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 117

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RKE  +TQ+++    G ++  IS  E GK     + +  +A   +T    L
Sbjct: 1  MIGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKGKKAPGRETLEKIADFFNTTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|304397757|ref|ZP_07379634.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304354929|gb|EFM19299.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 185

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +R+    +      RTG +++ + ++E G+S+  +  +  +A   + P
Sbjct: 12 LRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62


>gi|289427920|ref|ZP_06429624.1| cupin domain protein [Propionibacterium acnes J165]
 gi|289158803|gb|EFD07003.1| cupin domain protein [Propionibacterium acnes J165]
 gi|332676593|gb|AEE73409.1| putative transcriptional regulator [Propionibacterium acnes 266]
          Length = 288

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 29/83 (34%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P +      +               +  R   + T  ++ +  G ++  +  +E G   
Sbjct: 85  LPTKCIIMHCMDTGAEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVN 144

Query: 61  INIDNMIILAHTLDTPLWKLLKP 83
             +  ++ L+  L   L  L++P
Sbjct: 145 PRVGTLLRLSDALGVGLPALVEP 167


>gi|317053257|ref|YP_004119024.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316952996|gb|ADU72468.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 157

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N FR  R     +Q+++    G +   +  +E G     ++ +  LA      + +L
Sbjct: 4  GNKFREYRLARAWSQEQLAEMAGLSTRTVQRIENGDR-PGLETLSALASVFGVSVSEL 60


>gi|253690628|ref|YP_003019818.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251757206|gb|ACT15282.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 188

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 29/61 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R+E   +       TG +++ + ++E G+S+  +  +  +A  L+      ++
Sbjct: 10 GNTLKTLRQEKGWSLTRSSEETGVSKAMLGQIERGESSPTVATLWKIATGLNVAFSTFIQ 69

Query: 83 P 83
          P
Sbjct: 70 P 70


>gi|228984945|ref|ZP_04145114.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228774768|gb|EEM23165.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 167

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 31/56 (55%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          + +R+    +Q+++  +    +  + + E  KS  +IDN+I+L+   +  L +L+K
Sbjct: 14 KKLRESKGFSQEDVAKKISVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELIK 69


>gi|255308189|ref|ZP_05352360.1| hypothetical protein CdifA_16466 [Clostridium difficile ATCC
          43255]
          Length = 73

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWKL 80
           +  RK+  LTQK++      +QS+IS LE     ++  I  +I L+  LD   +KL
Sbjct: 2  LKQARKDKNLTQKQLSKIANISQSYISRLEQDIFINSPTIRQIISLSKALDISAYKL 58


>gi|206973030|ref|ZP_03233952.1| transcriptional regulator Xre [Bacillus cereus AH1134]
 gi|206731914|gb|EDZ49114.1| transcriptional regulator Xre [Bacillus cereus AH1134]
          Length = 108

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+ +    ++S I   E  +   + + +I +A   +     
Sbjct: 2  KTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|153956225|ref|YP_001396990.1| hypothetical protein CKL_3629 [Clostridium kluyveri DSM 555]
 gi|146349083|gb|EDK35619.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
          Length = 76

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +N R +  L+Q+E+  R    +++IS LE  K    ++ +  +   L+ 
Sbjct: 11 LKNNRLKCGLSQEELAYRCELDRTYISLLEREKRKPTLNVIFKICENLNI 60


>gi|15789706|ref|NP_279530.1| hypothetical protein VNG0471C [Halobacterium sp. NRC-1]
 gi|169235420|ref|YP_001688620.1| transcription regulator-like protein [Halobacterium salinarum R1]
 gi|10580078|gb|AAG19010.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726486|emb|CAP13271.1| transcription regulator homolog [Halobacterium salinarum R1]
          Length = 66

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ R  R EA L+Q ++    G  +  I+ +E  +   +I+    LA   D  +  L  P
Sbjct: 3  NHVRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLFDP 62


>gi|54296056|ref|YP_122425.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris]
 gi|148358226|ref|YP_001249433.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby]
 gi|296105580|ref|YP_003617280.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99
          Alcoy]
 gi|53749841|emb|CAH11222.1| hypothetical protein lpp0074 [Legionella pneumophila str. Paris]
 gi|148279999|gb|ABQ54087.1| hypothetical protein LPC_0087 [Legionella pneumophila str. Corby]
 gi|295647481|gb|ADG23328.1| hypothetical protein lpa_00110 [Legionella pneumophila 2300/99
          Alcoy]
          Length = 94

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +R++A LTQ+E+  R G  +  IS LE G +  + + +   AH   
Sbjct: 37 MRQKAGLTQEELAERMGTKKGNISRLEKGNTNPSWNTLEKYAHACG 82


>gi|311069888|ref|YP_003974811.1| transcriptional repressor [Bacillus atrophaeus 1942]
 gi|310870405|gb|ADP33880.1| transcriptional repressor [Bacillus atrophaeus 1942]
          Length = 134

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R+E KLT  ++   +G + + IS +E GK        +  LA  L  P   L
Sbjct: 3  FGEQLRTLREERKLTVNQLAIYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEDL 62

Query: 81 LK 82
          +K
Sbjct: 63 MK 64


>gi|307710243|ref|ZP_07646686.1| mutR [Streptococcus mitis SK564]
 gi|307619005|gb|EFN98138.1| mutR [Streptococcus mitis SK564]
          Length = 287

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|302521428|ref|ZP_07273770.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302430323|gb|EFL02139.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 275

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R+  + +Q+E+ +R+G +   +S +ETGK+    + ++ L+  LD PL +
Sbjct: 10 VGALLRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPLRE 67


>gi|260777358|ref|ZP_05886252.1| hypothetical protein VIC_002752 [Vibrio coralliilyticus ATCC
          BAA-450]
 gi|260607024|gb|EEX33298.1| hypothetical protein VIC_002752 [Vibrio coralliilyticus ATCC
          BAA-450]
          Length = 270

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNR--------TGFAQSWISELETGKSTINIDNMIILA 70
          +  F    + +R+E +L+Q+E+ +         +G  Q  IS+ E GK+T +    + LA
Sbjct: 3  KENFSERLKQLREERQLSQEELADLLSSSHRAFSGVNQVMISQWERGKTTPSFVRRVGLA 62

Query: 71 HTLDTP 76
                
Sbjct: 63 SFFQVE 68


>gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri
          202-4]
 gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri
          202-4]
          Length = 335

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++RK+  L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          12129(1)]
 gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae
          12129(1)]
 gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae
          LMA3894-4]
          Length = 181

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  + +RK   L+       TG +++ + ++E G+S+  I  +  +A  L+
Sbjct: 7  KSQIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE 62


>gi|226305077|ref|YP_002765035.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|226184192|dbj|BAH32296.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
          Length = 168

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R+ A+++ +++    G +  ++S++E G    + D +  +A  L      L
Sbjct: 41 IRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSSEVL 95


>gi|298530403|ref|ZP_07017805.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509777|gb|EFI33681.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 93

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L++   F +     R +A LTQ E+  R G  Q+ I+ LE+G+   ++  +   A     
Sbjct: 24 LQDEFGFASMLIEARTKAGLTQTELARRMGMKQAGIARLESGRHNPSMKTLQKYAAATGH 83

Query: 76 PLWKLLKP 83
           L   + P
Sbjct: 84 ELSVRMLP 91


>gi|182683080|ref|YP_001834827.1| hypothetical protein SPCG_0110 [Streptococcus pneumoniae CGSP14]
 gi|182628414|gb|ACB89362.1| hypothetical protein SPCG_0110 [Streptococcus pneumoniae CGSP14]
 gi|301801071|emb|CBW33738.1| unnamed protein product [Streptococcus pneumoniae INV200]
          Length = 299

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 14 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 72

Query: 79 K 79
          +
Sbjct: 73 E 73


>gi|148983502|ref|ZP_01816821.1| hypothetical protein CGSSp3BS71_05209 [Streptococcus pneumoniae
          SP3-BS71]
 gi|147923649|gb|EDK74761.1| hypothetical protein CGSSp3BS71_05209 [Streptococcus pneumoniae
          SP3-BS71]
 gi|301799283|emb|CBW31809.1| Conserved hypothetical [Streptococcus pneumoniae OXC141]
          Length = 287

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|149005856|ref|ZP_01829585.1| hypothetical protein CGSSp18BS74_06755 [Streptococcus pneumoniae
          SP18-BS74]
 gi|168483749|ref|ZP_02708701.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          CDC1873-00]
 gi|307126339|ref|YP_003878370.1| helix-turn-helix domain-containing protein [Streptococcus
          pneumoniae 670-6B]
 gi|147762212|gb|EDK69173.1| hypothetical protein CGSSp18BS74_06755 [Streptococcus pneumoniae
          SP18-BS74]
 gi|172042876|gb|EDT50922.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          CDC1873-00]
 gi|306483401|gb|ADM90270.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B]
 gi|332205146|gb|EGJ19209.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47368]
          Length = 282

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|148996522|ref|ZP_01824240.1| hypothetical protein CGSSp11BS70_07500 [Streptococcus pneumoniae
          SP11-BS70]
 gi|168577050|ref|ZP_02722879.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          MLV-016]
 gi|307066788|ref|YP_003875754.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|147757097|gb|EDK64136.1| hypothetical protein CGSSp11BS70_07500 [Streptococcus pneumoniae
          SP11-BS70]
 gi|183577291|gb|EDT97819.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          MLV-016]
 gi|306408325|gb|ADM83752.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
          Length = 287

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|138893751|ref|YP_001124204.1| Xre family transcriptional regulator [Geobacillus
          thermodenitrificans NG80-2]
 gi|196250794|ref|ZP_03149481.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|134265264|gb|ABO65459.1| Transcriptional regulator Xre family [Geobacillus
          thermodenitrificans NG80-2]
 gi|196209744|gb|EDY04516.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 73

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+ +    G + S + E+E G    +   +  +A  L+  +
Sbjct: 2  EAERWGRRIRAFRKLKGYTQERLAKELGVSVSILGEIERGNRMPSDSLVEQIAELLNISV 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 EELTPP 67


>gi|15902148|ref|NP_357698.1| hypothetical protein spr0104 [Streptococcus pneumoniae R6]
 gi|15457641|gb|AAK98908.1| Hypothetical protein spr0104 [Streptococcus pneumoniae R6]
          Length = 299

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 14 RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 72

Query: 79 K 79
          +
Sbjct: 73 E 73


>gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22]
 gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
 gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22]
          Length = 334

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++RK+  L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM
          19370]
 gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM
          19370]
          Length = 395

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RK   ++  ++ +  G +   IS+ E  + +  +D +  LA TL  P    L
Sbjct: 9  VGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPKLDVVHNLAATLKFPHDYFL 68

Query: 82 KP 83
          +P
Sbjct: 69 RP 70


>gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1]
 gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1]
          Length = 182

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+      R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + 
Sbjct: 2  RIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMA 61

Query: 79 KLL 81
          +  
Sbjct: 62 EFF 64


>gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens
          FD-1]
          Length = 223

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R E  +TQK++  R   +   +S+ E G    ++  +  LA    T +  LL
Sbjct: 29 GQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGCPDVSLLSALADVFGTDIRVLL 87


>gi|229170504|ref|ZP_04298155.1| transcriptional regulator, XRE [Bacillus cereus AH621]
 gi|228612974|gb|EEK70148.1| transcriptional regulator, XRE [Bacillus cereus AH621]
          Length = 108

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+ +    ++S I   E  +   + + +I +A   +     
Sbjct: 2  KTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|222081872|ref|YP_002541237.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726551|gb|ACM29640.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 174

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++R    L+Q+E+  R G   S IS +E+  +  ++  +  +   +   L +  
Sbjct: 1  MRHLRVAHNLSQRELAKRAGVTNSTISLIESNSANPSVGALKRILDGIPIGLAEFF 56


>gi|218675074|ref|ZP_03524743.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 469

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|167746263|ref|ZP_02418390.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662]
 gi|167654256|gb|EDR98385.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662]
          Length = 191

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R ++KL+Q E+  +    +  IS  E GK+  ++ ++++L+      L  L+
Sbjct: 3  FSKQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|167033734|ref|YP_001668965.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860222|gb|ABY98629.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 180

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  +TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60


>gi|33598043|ref|NP_885686.1| MerR family transcriptional regulator [Bordetella parapertussis
           12822]
 gi|33602935|ref|NP_890495.1| MerR family transcriptional regulator [Bordetella bronchiseptica
           RB50]
 gi|33568566|emb|CAE34324.1| probable MerR-family transcriptional regulator [Bordetella
           bronchiseptica RB50]
 gi|33574472|emb|CAE38810.1| probable MerR-family transcriptional regulator [Bordetella
           parapertussis]
          Length = 271

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 8   EPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
            P   D    +R          FR  R++  ++ +E  + TG   S+IS  E       +
Sbjct: 74  APAPQDPARPKRSANTQQLGRQFRVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAV 133

Query: 64  DNMIILAHTLDTPLWKLLKP 83
            ++  LA    T + +L  P
Sbjct: 134 ASLQRLAACYGTTVTELSAP 153


>gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 112

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+   LT+++       + +++S++E G+   ++   I +A TL   L  L+
Sbjct: 13 GKRIKAERERNGLTREKFSELVSISPTYLSQIELGQRHPSLPTTIKIASTLHISLDFLV 71


>gi|324995381|gb|EGC27293.1| transcriptional regulator [Streptococcus sanguinis SK678]
          Length = 108

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102


>gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str.
          Marburg]
 gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter
          marburgensis str. Marburg]
          Length = 190

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R    +T +E+  R+G  +  I ++E G    ++  +I ++ TL   L  LL
Sbjct: 6  VGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDILPSLTPLIKISRTLGVRLGTLL 65


>gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63]
          Length = 164

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R+++ LTQ+++  + G     IS  E G    +I+ + +LA   +  + +LL
Sbjct: 7  GKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNYMPDIEMLQLLAKEFNVSINELL 65


>gi|296122323|ref|YP_003630101.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
 gi|296014663|gb|ADG67902.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM
          3776]
          Length = 196

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/75 (12%), Positives = 32/75 (42%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
             L         +  +  R +R++   +  ++ + +G ++S +S++E  ++   +    
Sbjct: 5  SSDLPTPSDAISQMLCHRVRELRQQNGWSLDQLSSASGVSRSMLSQIERNQANPTLAVTA 64

Query: 68 ILAHTLDTPLWKLLK 82
           +A      + +L++
Sbjct: 65 RIAQAFGLTIGQLVE 79


>gi|229490145|ref|ZP_04383992.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
          SK121]
 gi|229322893|gb|EEN88667.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
          SK121]
          Length = 168

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R+ A+++ +++    G +  ++S++E G    + D +  +A  L      L
Sbjct: 41 IRAQREAAQVSMRQLAQLAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSSEVL 95


>gi|228982439|ref|ZP_04142698.1| hypothetical protein bthur0002_55720 [Bacillus thuringiensis Bt407]
 gi|228776622|gb|EEM24930.1| hypothetical protein bthur0002_55720 [Bacillus thuringiensis Bt407]
          Length = 317

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
           ++  F    +++R       +++   +G + S+I  LE G+  +  ++ +  LA  L+ P
Sbjct: 176 DQENFGALLKHLRLSKGYALEDVGRLSGVSASYIHLLEKGQRQSPTLETVEKLAEGLEVP 235

Query: 77  LWKLLK 82
           +    K
Sbjct: 236 VQYFFK 241


>gi|228984873|ref|ZP_04145043.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
 gi|228774823|gb|EEM23219.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          tochigiensis BGSC 4Y1]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229109238|ref|ZP_04238837.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15]
 gi|228674248|gb|EEL29493.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229149987|ref|ZP_04278212.1| Transcriptional regulator, Xre [Bacillus cereus m1550]
 gi|228633425|gb|EEK90029.1| Transcriptional regulator, Xre [Bacillus cereus m1550]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229155360|ref|ZP_04283470.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342]
 gi|228628075|gb|EEK84792.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|229195999|ref|ZP_04322751.1| Transcriptional regulator, Xre [Bacillus cereus m1293]
 gi|228587381|gb|EEK45447.1| Transcriptional regulator, Xre [Bacillus cereus m1293]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|225857979|ref|YP_002739489.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585]
 gi|225720626|gb|ACO16480.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585]
          Length = 287

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|218234393|ref|YP_002366467.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218162350|gb|ACK62342.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|163786116|ref|ZP_02180564.1| hypothetical protein FBALC1_13062 [Flavobacteriales bacterium
          ALC-1]
 gi|159877976|gb|EDP72032.1| hypothetical protein FBALC1_13062 [Flavobacteriales bacterium
          ALC-1]
          Length = 189

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++    +N    RK    TQ+E+ ++T      I  +E G+   ++  + +LA  LD  +
Sbjct: 2  KKQTLKDNLLYQRKLKGFTQEELADKTTVGVRTIQRIEKGEVQPHLQTVKLLAVGLDVEV 61

Query: 78 WKLLK 82
            LLK
Sbjct: 62 DDLLK 66


>gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC
          29799]
 gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC
          29799]
          Length = 171

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK   L+Q+++  +   ++  IS+ E G +  ++DN+I ++   D  L  
Sbjct: 1  MTFSEKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMG-AIPDMDNVIKISRFFDCSLDY 59

Query: 80 LL 81
          L+
Sbjct: 60 LM 61


>gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC
          29799]
 gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile
          DSM 15176]
 gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC
          29799]
 gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile
          DSM 15176]
 gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 109

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  R++A  TQ  +    G   + +S +E G S I+++ +  L   L     +++
Sbjct: 12 GGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGVSADRII 70


>gi|153831210|ref|ZP_01983877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39]
 gi|148873308|gb|EDL71443.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39]
          Length = 181

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  +N+RK   L+       TG +++ + ++E G+S+  I  +  +A   +
Sbjct: 7  KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFE 62


>gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1]
          Length = 470

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++       R +R E  L+Q  + +  G + S++++LE  +  + +  ++ L   L  
Sbjct: 2  KKTFMGVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGV 59


>gi|116515314|ref|YP_815612.1| hypothetical protein SPD_0112 [Streptococcus pneumoniae D39]
 gi|116075890|gb|ABJ53610.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
          Length = 287

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L]
 gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI]
 gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L]
 gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          andalousiensis BGSC 4AW1]
 gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI]
          Length = 66

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N     R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  + P+  +
Sbjct: 1  MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDV 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|47565459|ref|ZP_00236500.1| transcriptional regulator, XRE family [Bacillus cereus G9241]
 gi|47557449|gb|EAL15776.1| transcriptional regulator, XRE family [Bacillus cereus G9241]
          Length = 404

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+     LL
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
          Length = 183

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R + KLTQ+ + +     ++ ++ +E   +  ++  +  +A  L   + +LL
Sbjct: 7  GMRIRQLRSQRKLTQQALADMAEIPRATLATVEKDDANPSLAVVYKIARALGLSIDQLL 65


>gi|312131208|ref|YP_003998548.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM
          17132]
 gi|311907754|gb|ADQ18195.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM
          17132]
          Length = 96

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           R  R+E +LTQ E+    G  + +IS++E   S + +  +  +  
Sbjct: 38 LRKAREEKQLTQAELAEAVGKKREYISKIENNGSNLTLKTLYDIVE 83


>gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612]
 gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612]
          Length = 113

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  + +RKE  LTQ ++ +  G +   I  LE G+   +I     +A    T +  L
Sbjct: 43 NRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYNPSIMLAYKIARLFGTTIEAL 99


>gi|320107125|ref|YP_004182715.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319925646|gb|ADV82721.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 112

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +RKE  LTQ ++  + G   + I   E G S   +D +  LA  L     +LL
Sbjct: 9  RLRKERSLTQPQLAEKIGLHVAQIRRYEAGTSQPTLDVIRSLAVALGVSADELL 62


>gi|291561113|emb|CBL39912.1| transcriptional regulator, XRE family [butyrate-producing
          bacterium SS3/4]
          Length = 94

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            +TQKE+  RTG  Q+ IS LE G    +I  +  LA  +   L     P
Sbjct: 40 QNMTQKELSERTGINQTEISRLENGSRNPSIKLLQRLAEGMGMTLKISFVP 90


>gi|291523313|emb|CBK81606.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 130

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R  RK  +LTQ+E+ + +  +   I+ +E  K   +   +  LA  L   L  L+ P
Sbjct: 11 QKMREARKNKELTQQELSDLSHVSVKQIANIEKWKMNPSYLILRALAKVLLISLDTLINP 70


>gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1]
          Length = 334

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++RK+  L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSKLFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
 gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 192

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++   +  ++   +G +++ I ++E G+S+     +  LA + D  + +L+
Sbjct: 17 GQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLAGSFDMSMSQLI 75


>gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 70

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R E  +TQK +    G ++  I+ +E G+    I     +   LD  L  L 
Sbjct: 7  IKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYNPTIKLCRKICRVLDKSLDDLF 62


>gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM
          11079-80]
 gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM
          11079-80]
          Length = 181

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +    N  + +RK   L+       TG +++ + ++E G+S+  I  +  +A   +
Sbjct: 7  KSQIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFE 62


>gi|222147627|ref|YP_002548584.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221734615|gb|ACM35578.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 469

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +  IF     R +R    LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  DHKIFAGPRVRRVRNGLGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|222087937|ref|YP_002545814.1| transcriptional regulator, XRE family [Agrobacterium radiobacter
          K84]
 gi|221725385|gb|ACM28541.1| transcriptional regulator, XRE family [Agrobacterium radiobacter
          K84]
          Length = 87

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R     N R +R    ++Q ++       +S+   LE G     +  +  LA  L   +
Sbjct: 3  ARQRVALNLRRLRVLRGISQDDLALAADIERSYAGYLERGGKNPTVTTLEKLAAALSCDI 62

Query: 78 WKLLKP 83
           +   P
Sbjct: 63 SEFFAP 68


>gi|197301908|ref|ZP_03166972.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC
          29176]
 gi|197298976|gb|EDY33512.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC
          29176]
          Length = 111

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 +  R +   TQ+    ++G + S+ +++E G+   +I+  + LA T    L
Sbjct: 7  KSIGRTLKERRLQLGYTQELAAEKSGISYSYYTKIERGEQLPSIEICVQLAQTFHLSL 64


>gi|168487063|ref|ZP_02711571.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          CDC1087-00]
 gi|183570019|gb|EDT90547.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          CDC1087-00]
          Length = 287

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|219847619|ref|YP_002462052.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM
          9485]
 gi|219541878|gb|ACL23616.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM
          9485]
          Length = 779

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R  R    LTQ E+  R G + + I ++E  +   + +   +LA  L  P  +
Sbjct: 9  FGYWVRRRRLALDLTQAELGRRAGVSAAAIRKIEADERRPSCELAELLASALGVPAEE 66


>gi|114568709|ref|YP_755389.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339171|gb|ABI64451.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 115

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 24/61 (39%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  +  R   ++TQ  +   +      +S +E G S  + + +  L   L+     L
Sbjct: 13 LFCSRLKQARSNRRMTQSALAEASDLTVDMVSRIERGTSFPSFNALARLVEALEIDPAFL 72

Query: 81 L 81
           
Sbjct: 73 F 73


>gi|90424563|ref|YP_532933.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106577|gb|ABD88614.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
           BisB18]
          Length = 135

 Score = 47.3 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 5   KRDEPHLSDAILR----ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           KR      +  L     +R+   +N  R IR+   + Q E+    G +Q+++SE+ETG+ 
Sbjct: 53  KRALKEGREVALPKAVADRLAKGDNAIRVIREWRDMIQDELAVAVGISQNYLSEIETGRR 112

Query: 60  TINIDNMIILAHTLDTPLWKLLK 82
               +  +  A  L  P+  L++
Sbjct: 113 KGPAELQMKFARALGVPIDLLIE 135


>gi|325002074|ref|ZP_08123186.1| DNA-binding protein [Pseudonocardia sp. P1]
          Length = 184

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           ++  E+  R G A+S +S+LE G    +++ +  +A     P   L++P
Sbjct: 22 GISSAELARRAGIAKSTLSQLEAGTGNPSVETLWAIAVVAGVPFSTLVEP 71


>gi|323142572|ref|ZP_08077388.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
 gi|322413005|gb|EFY03908.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp.
          YIT 12067]
          Length = 125

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R  R E   +Q ++    G + + +S +E G++ +++  ++ LA  L+ 
Sbjct: 16 GQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEK 68


>gi|319948667|ref|ZP_08022789.1| transcriptional regulator [Dietzia cinnamea P4]
 gi|319437649|gb|EFV92647.1| transcriptional regulator [Dietzia cinnamea P4]
          Length = 176

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%)

Query: 10  HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
              D    E     +  R  R+ A+++ +++  R G +  ++S++E G    + + +  +
Sbjct: 51  VDGDRRSSESQDIGSFIRAQREAAQVSIRQLAERAGVSNPYLSQIERGLRKPSAEVLGQI 110

Query: 70  AHTLDTPLWKL 80
           A  L      L
Sbjct: 111 ARGLRLSAEVL 121


>gi|296282575|ref|ZP_06860573.1| transcriptional regulator [Citromicrobium bathyomarinum JL354]
          Length = 104

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +R +     R +R   + +Q E+  R   AQS +S++E G+  + +D +   +  +D 
Sbjct: 1  MTKRPMINEALRLLRLYCRYSQAEMAERLSVAQSMVSDVERGRKNVTMDLLEAYSRAVDI 60

Query: 76 PLWKLL 81
           + +LL
Sbjct: 61 RMSQLL 66


>gi|257877834|ref|ZP_05657487.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257812000|gb|EEV40820.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 168

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+M F    + +R    LTQ++   +    +  +S  E  ++  +++ +I +A   +  L
Sbjct: 10 EKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFELSL 69

Query: 78 WKLL 81
           +L+
Sbjct: 70 DELI 73


>gi|283797098|ref|ZP_06346251.1| putative toxin-antitoxin system, toxin component [Clostridium sp.
          M62/1]
 gi|291075515|gb|EFE12879.1| putative toxin-antitoxin system, toxin component [Clostridium sp.
          M62/1]
          Length = 111

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +++ +  +   A S++  +E G  +   ++++ L H L      +L
Sbjct: 10 GGRIRKCREALGYSRETLAEKADLASSFLGTIELGSGSFTAESLVKLCHALGVSADYIL 68


>gi|218673688|ref|ZP_03523357.1| putative transcriptional regulator protein [Rhizobium etli GR56]
          Length = 99

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  R  RK+  +T  ++   TG +   +S++E G  + ++  +  L+  L  PL  
Sbjct: 36 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 95

Query: 80 LLK 82
            +
Sbjct: 96 FFR 98


>gi|205352715|ref|YP_002226516.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Gallinarum str. 287/91]
 gi|207856901|ref|YP_002243552.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Enteritidis str. P125109]
 gi|205272496|emb|CAR37385.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|206708704|emb|CAR33030.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|326627783|gb|EGE34126.1| putative DNA-binding protein [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 9]
          Length = 178

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|200390330|ref|ZP_03216941.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|199602775|gb|EDZ01321.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
          Length = 178

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSVFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521]
 gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 73

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +  +TQKE+  R G ++  ++ +E G+    I     +   L   L  L 
Sbjct: 7  IKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIKLCRSICKVLGKKLDDLF 62


>gi|119899345|ref|YP_934558.1| anaerobic benzoate catabolism transcriptional regulator [Azoarcus
          sp. BH72]
 gi|119671758|emb|CAL95672.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 304

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R IR    +T+K +    G ++  ++ LE G+  ++I  +  +   LD  L +
Sbjct: 31 MSLGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEAGEGNVSIVLLRHITRALDVSLIE 90

Query: 80 LLKP 83
          LL P
Sbjct: 91 LLAP 94


>gi|328477982|gb|EGF47897.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462]
          Length = 70

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R +  LTQ+++ +R   ++  +S LE G+   ++     L+H  + P+ ++ 
Sbjct: 3  NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60


>gi|325067367|ref|ZP_08126040.1| helix-turn-helix domain-containing protein [Actinomyces oris K20]
          Length = 107

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M   +R E + +      R+       N R  A ++Q E+  R G  QS IS +E G   
Sbjct: 25 MTEAERAEYNRAAIETEARLQLAELVYNARAAAGISQTELARRAGTRQSVISAIENGAQA 84

Query: 61 INIDNMIILAHTLD 74
               +  +AH L 
Sbjct: 85 PGGVMLARIAHALG 98


>gi|325678585|ref|ZP_08158195.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109635|gb|EGC03841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 220

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E   +Q+ +  +   ++  +S  E  K   ++ +++IL+      L +L+K
Sbjct: 28 KTIRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKCYPDVHSLLILSDLFGVSLDELIK 86


>gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp.
          3_2_56FAA]
 gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp.
          3_2_56FAA]
          Length = 155

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H  + I+ ++         +R+E  +TQ E+  + G     +S  E G    +I  M+ L
Sbjct: 9  HKKEGIILDQKKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNYMPDIATMLSL 68

Query: 70 AHTLDTPLWKLL 81
              +  + +LL
Sbjct: 69 CEEFEISINELL 80


>gi|315650501|ref|ZP_07903570.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
 gi|315487239|gb|EFU77552.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
          Length = 79

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+    RK   L+Q  +  + G ++  I+ +ETGK T ++     +A+ L   L+ + 
Sbjct: 3  NHIERYRKPLGLSQHRLGKKVGVSRIAINRIETGKVTPSLRLANDIANALGVCLYDIF 60


>gi|299145747|ref|ZP_07038815.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides sp. 3_1_23]
 gi|298516238|gb|EFI40119.1| toxin-antitoxin system, antitoxin component, Xre family
           [Bacteroides sp. 3_1_23]
          Length = 138

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +    IRKE  ++Q+ +  + G++   I+ +E   +TI+ID ++     L 
Sbjct: 78  LGSILALIRKEKAISQRALAEKAGYSHLTIANIERKTTTISIDTLLKTVDVLG 130


>gi|293385315|ref|ZP_06631128.1| DNA-binding protein [Enterococcus faecalis R712]
 gi|293386573|ref|ZP_06631156.1| DNA-binding protein [Enterococcus faecalis S613]
 gi|312908107|ref|ZP_07767087.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312979000|ref|ZP_07790720.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|291077421|gb|EFE14785.1| DNA-binding protein [Enterococcus faecalis R712]
 gi|291083978|gb|EFE20941.1| DNA-binding protein [Enterococcus faecalis S613]
 gi|310625918|gb|EFQ09201.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311288179|gb|EFQ66735.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 320

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+I  N  +  R+   +TQ+ +  +      +IS+ E GK       +  +   L+  + 
Sbjct: 16 RLIIGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISID 75

Query: 79 KLL 81
           LL
Sbjct: 76 DLL 78


>gi|257437945|ref|ZP_05613700.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
 gi|257199605|gb|EEU97889.1| toxin-antitoxin system, antitoxin component, Xre family
          [Faecalibacterium prausnitzii A2-165]
          Length = 231

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RKE  +TQK+     G +Q+ +S  E G     +D ++ +A   +     LL
Sbjct: 3  FNRIIKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLL 62


>gi|284033097|ref|YP_003383028.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283812390|gb|ADB34229.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 801

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74
           R  R  A LTQ  +  + G ++  +S LE G +    I  +  LA  L 
Sbjct: 10 LRQFRTAAGLTQGGLAEKAGLSEQAVSLLERGTRRRPRIATVHALAEALG 59


>gi|239820501|ref|YP_002947686.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
 gi|239805354|gb|ACS22420.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 173

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           A ++  E+   +G + S +S +E G  + +++ +  LA  L  P  +  
Sbjct: 2  AADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 51


>gi|239817491|ref|YP_002946401.1| XRE family transcriptional regulator [Variovorax paradoxus S110]
 gi|239804068|gb|ACS21135.1| transcriptional regulator, XRE family [Variovorax paradoxus S110]
          Length = 173

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           A ++  E+   +G + S +S +E G  + +++ +  LA  L  P  +  
Sbjct: 2  AADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 51


>gi|209547982|ref|YP_002279899.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209533738|gb|ACI53673.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 469

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLATVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
          Length = 405

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++    G +   +S+ E+G S  +I+ + +LA   +  + KLL
Sbjct: 6  GKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64


>gi|149010976|ref|ZP_01832281.1| hypothetical protein CGSSp19BS75_10988 [Streptococcus pneumoniae
          SP19-BS75]
 gi|225860151|ref|YP_002741660.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298501908|ref|YP_003723848.1| helix-turn-helix domain-containing protein [Streptococcus
          pneumoniae TCH8431/19A]
 gi|303254794|ref|ZP_07340894.1| hypothetical protein CGSSpBS455_05005 [Streptococcus pneumoniae
          BS455]
 gi|303259156|ref|ZP_07345134.1| hypothetical protein CGSSp9vBS293_02147 [Streptococcus pneumoniae
          SP-BS293]
 gi|303260913|ref|ZP_07346862.1| hypothetical protein CGSSp14BS292_02028 [Streptococcus pneumoniae
          SP14-BS292]
 gi|303263240|ref|ZP_07349163.1| hypothetical protein CGSSpBS397_02701 [Streptococcus pneumoniae
          BS397]
 gi|147764612|gb|EDK71542.1| hypothetical protein CGSSp19BS75_10988 [Streptococcus pneumoniae
          SP19-BS75]
 gi|225726428|gb|ACO22279.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298237503|gb|ADI68634.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          TCH8431/19A]
 gi|302598231|gb|EFL65277.1| hypothetical protein CGSSpBS455_05005 [Streptococcus pneumoniae
          BS455]
 gi|302637750|gb|EFL68236.1| hypothetical protein CGSSp14BS292_02028 [Streptococcus pneumoniae
          SP14-BS292]
 gi|302639574|gb|EFL70031.1| hypothetical protein CGSSpBS293_02147 [Streptococcus pneumoniae
          SP-BS293]
 gi|302647013|gb|EFL77237.1| hypothetical protein CGSSpBS397_02701 [Streptococcus pneumoniae
          BS397]
 gi|327390524|gb|EGE88864.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA04375]
 gi|332077417|gb|EGI87878.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41301]
          Length = 287

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile]
          Length = 404

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++    G +   +S+ E+G S  +I+ + +LA   +  + KLL
Sbjct: 6  GKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64


>gi|16080419|ref|NP_391246.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221311316|ref|ZP_03593163.1| hypothetical protein Bsubs1_18266 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221315643|ref|ZP_03597448.1| hypothetical protein BsubsN3_18182 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221320559|ref|ZP_03601853.1| hypothetical protein BsubsJ_18150 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221324843|ref|ZP_03606137.1| hypothetical protein BsubsS_18301 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|296330426|ref|ZP_06872906.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305675972|ref|YP_003867644.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii
          str. W23]
 gi|81637534|sp|O32236|RGHR_BACSU RecName: Full=HTH-type transcriptional repressor rghR; AltName:
          Full=RapGH repressor
 gi|2635879|emb|CAB15371.1| transcriptional repressor [Bacillus subtilis subsp. subtilis str.
          168]
 gi|2702241|gb|AAB91590.1| Yvan [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|291485899|dbj|BAI86974.1| hypothetical protein BSNT_05102 [Bacillus subtilis subsp. natto
          BEST195]
 gi|296152429|gb|EFG93298.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305414216|gb|ADM39335.1| transcriptional repressor [Bacillus subtilis subsp. spizizenii
          str. W23]
          Length = 135

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
            F    R +R+E KLT  ++   +G + + IS +E GK        +  LA  L  P  
Sbjct: 2  ESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYE 61

Query: 79 KLL 81
           L+
Sbjct: 62 GLM 64


>gi|16802162|ref|NP_463647.1| hypothetical protein lmo0114 [Listeria monocytogenes EGD-e]
 gi|46906354|ref|YP_012743.1| repressor protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092250|ref|ZP_00230042.1| repressor protein, putative [Listeria monocytogenes str. 4b
          H7858]
 gi|47095185|ref|ZP_00232797.1| repressor protein, putative [Listeria monocytogenes str. 1/2a
          F6854]
 gi|116871527|ref|YP_848308.1| bacteriophage-type repressor, putative [Listeria welshimeri
          serovar 6b str. SLCC5334]
 gi|217965783|ref|YP_002351461.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23]
 gi|224498185|ref|ZP_03666534.1| helix-turn-helix domain protein [Listeria monocytogenes Finland
          1988]
 gi|224502962|ref|ZP_03671269.1| helix-turn-helix domain protein [Listeria monocytogenes FSL
          R2-561]
 gi|226222753|ref|YP_002756860.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes Clip81459]
 gi|254827546|ref|ZP_05232233.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N3-165]
 gi|254832362|ref|ZP_05237017.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes 10403S]
 gi|254899558|ref|ZP_05259482.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes J0161]
 gi|254913239|ref|ZP_05263251.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937620|ref|ZP_05269317.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|254991791|ref|ZP_05273981.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes FSL J2-064]
 gi|255016940|ref|ZP_05289066.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes FSL F2-515]
 gi|255022366|ref|ZP_05294352.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes FSL J1-208]
 gi|255025309|ref|ZP_05297295.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes FSL J2-003]
 gi|255028080|ref|ZP_05300031.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes LO28]
 gi|255519835|ref|ZP_05387072.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria
          monocytogenes FSL J1-175]
 gi|284803147|ref|YP_003415012.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578]
 gi|284996288|ref|YP_003418056.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923]
 gi|12054764|emb|CAC20620.1| AX protein [Listeria monocytogenes]
 gi|16409473|emb|CAC98329.1| lmo0114 [Listeria monocytogenes EGD-e]
 gi|46879618|gb|AAT02920.1| putative prophage LambdaLm01, repressor protein [Listeria
          monocytogenes serotype 4b str. F2365]
 gi|47016530|gb|EAL07451.1| repressor protein, putative [Listeria monocytogenes str. 1/2a
          F6854]
 gi|47019452|gb|EAL10193.1| repressor protein, putative [Listeria monocytogenes str. 4b
          H7858]
 gi|116740405|emb|CAK19525.1| bacteriophage-type repressor, putative [Listeria welshimeri
          serovar 6b str. SLCC5334]
 gi|217335053|gb|ACK40847.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23]
 gi|225875215|emb|CAS03909.1| Putative repressor C1 from lactococcal bacteriophage Tuc2009
          [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599922|gb|EEW13247.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N3-165]
 gi|258610220|gb|EEW22828.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284058709|gb|ADB69650.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578]
 gi|284061755|gb|ADB72694.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923]
 gi|293591239|gb|EFF99573.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307569672|emb|CAR82851.1| repressor protein, putative [Listeria monocytogenes L99]
 gi|313611579|gb|EFR86184.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          monocytogenes FSL F2-208]
 gi|328468450|gb|EGF39456.1| hypothetical protein LM1816_04172 [Listeria monocytogenes 1816]
 gi|328472713|gb|EGF43568.1| hypothetical protein LM220_04442 [Listeria monocytogenes 220]
 gi|332310528|gb|EGJ23623.1| Bacteriophage-type repressor [Listeria monocytogenes str. Scott
          A]
          Length = 111

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  +    +  IS  E G    N D +  LA   +  L  
Sbjct: 5  KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|325833116|ref|ZP_08165664.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485672|gb|EGC88139.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 75

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 25/65 (38%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R         IR+   L+Q         ++  ++ +E+G     I+ +  +A  L   +
Sbjct: 10 DRKRLGMRVSRIRQAKGLSQSRFAMMLEMSRPTLNMIESGYDNFKINTLARIARGLGVEI 69

Query: 78 WKLLK 82
            L K
Sbjct: 70 EDLFK 74


>gi|318056750|ref|ZP_07975473.1| transcriptional regulator, XRE family protein [Streptomyces sp.
          SA3_actG]
 gi|318079624|ref|ZP_07986956.1| transcriptional regulator, XRE family protein [Streptomyces sp.
          SA3_actF]
          Length = 266

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  + +Q+E+ +R+G +   +S +ETGK+    + ++ L+  LD PL +
Sbjct: 5  LRTWRERRRYSQQELSDRSGVSTRHLSRVETGKARPTPEMLVHLSENLDLPLRE 58


>gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
 gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
          Length = 167

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 3  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62


>gi|303241851|ref|ZP_07328346.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590626|gb|EFL60379.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 223

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  + +R++++L+QK+I +  G  +  ++  E  K   + + +  LA      +  
Sbjct: 1  MSFASMLKQLREQSRLSQKDIADYLGITRQAVASYELAKREPDYEILKKLADYFGVSIDY 60

Query: 80 LL 81
          +L
Sbjct: 61 IL 62


>gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 203

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 34/58 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+E+ ++ G ++  +S+ E+ +ST +++ +II++         +LK
Sbjct: 6  RIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYILK 63


>gi|168185803|ref|ZP_02620438.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
 gi|169296146|gb|EDS78279.1| DNA-binding protein [Clostridium botulinum C str. Eklund]
          Length = 221

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            +  R+ R +A +T+K++  + G A+ +I E+E+GK  IN   M  ++  L   L
Sbjct: 4  VGSKIRDARLKANVTEKQLARKIGVAEKFIKEVESGKKVINESVMEKISKVLGKDL 59


>gi|196048279|ref|ZP_03115456.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196021016|gb|EDX59746.1| DNA-binding protein [Bacillus cereus 03BB108]
          Length = 184

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK A LT K +   +    S +S++E G +  ++  + +++  L+ PL+   
Sbjct: 7  GEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIPLFNFF 65


>gi|160946750|ref|ZP_02093953.1| hypothetical protein PEPMIC_00709 [Parvimonas micra ATCC 33270]
 gi|158447134|gb|EDP24129.1| hypothetical protein PEPMIC_00709 [Parvimonas micra ATCC 33270]
          Length = 120

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+N  +   + A L Q E+  ++   QS IS+   GK     D +  LA  L+     L+
Sbjct: 5  FLNRLKAAMQSANLNQCELAKKSNITQSSISDWLNGKYVPKQDKIDALAQALNVTPAYLM 64


>gi|149370530|ref|ZP_01890219.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49]
 gi|149356081|gb|EDM44638.1| hypothetical protein SCB49_13740 [unidentified eubacterium SCB49]
          Length = 104

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +      +R  A  +Q E+  +TG ++S I+ +E G    +I ++I +A +L+
Sbjct: 17 WGEKLSALRVAAGWSQTELAEKTGMSRSSIAGIEKG-RNFSIASLISIARSLE 68


>gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium]
          Length = 203

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 34/58 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+E+ ++ G ++  +S+ E+ +ST +++ +II++         +LK
Sbjct: 6  RIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYILK 63


>gi|73541020|ref|YP_295540.1| anaerobic benzoate catabolism transcriptional regulator
          [Ralstonia eutropha JMP134]
 gi|72118433|gb|AAZ60696.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Ralstonia eutropha JMP134]
          Length = 309

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R    +++K++      ++ +++ LETG    ++  +  +A  LD PL  +L
Sbjct: 29 LGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVARALDVPLPVVL 88


>gi|77412137|ref|ZP_00788460.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae CJB111]
 gi|77161797|gb|EAO72785.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae CJB111]
          Length = 197

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|313625620|gb|EFR95300.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria
          innocua FSL J1-023]
          Length = 111

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  +    +  IS  E G    N D +  LA   +  L  
Sbjct: 5  KFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 185

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           RRK  +      I           + IRK+  +TQ E     G   + IS++ETG  T  
Sbjct: 79  RRKYKDVQTKKIIDP--HAIGARLKAIRKDEGMTQGEFGALVGLTHTGISKIETGHRTPE 136

Query: 63  IDNMIILAHTLDTPL 77
           I   + +  +L   L
Sbjct: 137 IKTALKIKRSLGKTL 151


>gi|302670016|ref|YP_003829976.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus
          B316]
 gi|302394489|gb|ADL33394.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus
          B316]
          Length = 210

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R +  LTQ+++    G     +S+ E G+S  +I  +  LA+  +T +  LL
Sbjct: 7  NLKKYRIQKDLTQEDVAEFLGITAQSVSKWERGESYPDITLLPALANIFETSVDLLL 63


>gi|291525631|emb|CBK91218.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
          Length = 72

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   +  +  
Sbjct: 1  MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|302865151|ref|YP_003833788.1| helix-turn-helix domain-containing protein [Micromonospora
          aurantiaca ATCC 27029]
 gi|302568010|gb|ADL44212.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
          27029]
          Length = 213

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R     T +E+    G +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRVIGGVLRRTRLRQGRTLREVALAAGVSLPYLSEVERGRKEASSEVLAAICRALGIHLA 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 DLLE 68


>gi|238020232|ref|ZP_04600658.1| hypothetical protein GCWU000324_00107 [Kingella oralis ATCC
          51147]
 gi|237868626|gb|EEP69630.1| hypothetical protein GCWU000324_00107 [Kingella oralis ATCC
          51147]
          Length = 152

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R IR+    +Q+ +  +   + +  +++E G+  + +D +  +A  L   +  LL
Sbjct: 23 EKIRKIRELKNFSQENMAEQLQMSVNGYAKIERGEVGLQMDKLEKIADVLGMDVVDLL 80


>gi|229020239|ref|ZP_04177011.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1273]
 gi|229026464|ref|ZP_04182821.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1272]
 gi|228734927|gb|EEL85565.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1272]
 gi|228741079|gb|EEL91305.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH1273]
          Length = 75

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN   +R E + +Q ++ N+ G ++  I+ +E  +   ++     +AH L     ++ +
Sbjct: 9  NNLVVLRAEKRWSQTDLANKAGVSRQTIASIEANRYNPSLILAFEIAHILGKEFHEVFQ 67


>gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans
          DSM 16841]
 gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans
          DSM 16841]
          Length = 339

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  + +R+   ++QK+I ++ G     +S+ E   S   +  +  +A      +  
Sbjct: 2  KTIGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGSLPEMTMLPDIASLFGIQIDD 61

Query: 80 LLK 82
          L +
Sbjct: 62 LFE 64


>gi|197106560|ref|YP_002131937.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196479980|gb|ACG79508.1| transcriptional regulator, Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 108

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKS 59
          MP R   +P  +  I   R       +  R+ A +TQ E+  + G    +++S++E+G  
Sbjct: 1  MP-RPATDPAKAAQIKALRQQAGRWLKAAREAAGMTQAELAEKVGLRYYTFVSQVESGLG 59

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
           + I+     A  L     +  +
Sbjct: 60 RLPIETQAAWATALGLDPGEFAR 82


>gi|168183639|ref|ZP_02618303.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|237797020|ref|YP_002864572.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182673224|gb|EDT85185.1| DNA-binding protein [Clostridium botulinum Bf]
 gi|229263790|gb|ACQ54823.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 220

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +  LTQK++  + G A+S+I+E+E+G+  IN   M  ++  L  
Sbjct: 7  KIKEARLKKGLTQKQLAKKLGVAESFINEVESGRKIINESLMNRISKVLGK 57


>gi|241662308|ref|YP_002980668.1| XRE family transcriptional regulator [Ralstonia pickettii 12D]
 gi|240864335|gb|ACS61996.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D]
          Length = 101

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + R  R    + Q+ + + +G  +S + ++E G+    +  ++ +A  L      L+
Sbjct: 25 FGASVREERTSQGIAQETLAHLSGIERSHMGKIERGEHVPTLPLILKIARALKCSSAHLM 84


>gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51]
 gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 322

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI      ++RK    +Q+E+  +   ++  IS+ E+  +  +I+ ++ LA         
Sbjct: 1  MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 322

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI      ++RK    +Q+E+  +   ++  IS+ E+  +  +I+ ++ LA         
Sbjct: 1  MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|23014107|ref|ZP_00053943.1| COG3800: Predicted transcriptional regulator [Magnetospirillum
          magnetotacticum MS-1]
          Length = 480

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 35/68 (51%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++ +++      R +R+  KL+Q  +      + S+++++E  +  + +  ++ +A  LD
Sbjct: 2  VMNKKLFLGYKLRRLREGKKLSQAALAALLEVSPSYLNQIENNQRPLTVPVLLRIAKVLD 61

Query: 75 TPLWKLLK 82
            L  L++
Sbjct: 62 VDLATLVE 69


>gi|15595422|ref|NP_248916.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107099214|ref|ZP_01363132.1| hypothetical protein PaerPA_01000225 [Pseudomonas aeruginosa
          PACS2]
 gi|116053938|ref|YP_788376.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218888966|ref|YP_002437830.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254243326|ref|ZP_04936648.1| hypothetical protein PA2G_04136 [Pseudomonas aeruginosa 2192]
 gi|9946062|gb|AAG03614.1|AE004460_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115589159|gb|ABJ15174.1| putative transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126196704|gb|EAZ60767.1| hypothetical protein PA2G_04136 [Pseudomonas aeruginosa 2192]
 gi|218769189|emb|CAW24949.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 179

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  +TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60


>gi|329116090|ref|ZP_08244807.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326906495|gb|EGE53409.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 284

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLWK 79
          I   N + +RK    TQ E+     F++ + IS  E G+   + + +  ++      L  
Sbjct: 7  ILGENLKKLRKLFGHTQDELAEILHFSKGNVISYYEKGERYPDQETLEKISDYFHISLDD 66

Query: 80 LL 81
          LL
Sbjct: 67 LL 68


>gi|326795756|ref|YP_004313576.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1]
 gi|326546520|gb|ADZ91740.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1]
          Length = 203

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P  +       D    E +      + IR     T +E+  RTG A+S +S++E  + + 
Sbjct: 5  PSLETATSAEPDK-FVEPLELGKRVKEIRLTKGWTLEEVSQRTGIARSTLSKIENDQVSP 63

Query: 62 NIDNMIILAHTLDTPLWKLL 81
          +   +  L   L   L +L 
Sbjct: 64 SFTIVQKLIKGLGMDLPQLF 83


>gi|308274963|emb|CBX31562.1| hypothetical protein N47_E50740 [uncultured Desulfobacterium sp.]
          Length = 117

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLD 74
           F   R  A +TQ E+  R G  QS I+ LE  +GK + ++  +   A+ L 
Sbjct: 33 QFLKARSAAGITQAEVAERIGTTQSVIARLESGSGKHSPSLATLQKYANALG 84


>gi|297571861|ref|YP_003697635.1| XRE family transcriptional regulator [Arcanobacterium
          haemolyticum DSM 20595]
 gi|296932208|gb|ADH93016.1| transcriptional regulator, XRE family [Arcanobacterium
          haemolyticum DSM 20595]
          Length = 109

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R IR+E  ++ + +  +    F+Q+ +S +E+GK    +D +++L+  L TPL +
Sbjct: 7  GTRIREIREEQGMSARALAEKADGVFSQATLSRIESGKREPKLDELLVLSWLLSTPLDE 65


>gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 166

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 30/67 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  +  I     +  RK+ KLTQ  +      +   IS+ E G +  +  NMI +A  LD
Sbjct: 2  VEMKETILAMKLKEYRKKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELD 61

Query: 75 TPLWKLL 81
            L  LL
Sbjct: 62 ISLETLL 68


>gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH
          domain [Thermococcus sibiricus MM 739]
 gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH
          domain [Thermococcus sibiricus MM 739]
          Length = 65

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+   LTQ+++    G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFKVKIEDIF 60


>gi|227534620|ref|ZP_03964669.1| bifunctional S24 family peptidase/transcriptional regulator
          [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187721|gb|EEI67788.1| bifunctional S24 family peptidase/transcriptional regulator
          [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 277

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +RK+ K+TQ ++   TG AQ+ IS  E     ++ +++I  A  L      L
Sbjct: 8  ILGPVIKELRKQKKMTQADLSRITGIAQNTISNHENQNRALDENSIIKYAKALGVTPQAL 67


>gi|261344646|ref|ZP_05972290.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282567562|gb|EFB73097.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 91

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              ++ R+   LT  E+  R   +Q  IS  E G + I  D ++IL + L+   + +
Sbjct: 12 GKMLKSYRRRTGLTGTELAKRINVSQQQISRYENGVNNITFDKLMILFNALEMNRYDI 69


>gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 404

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++    G +   +S+ E+G S  +I+ + +LA   +  + KLL
Sbjct: 6  GKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64


>gi|213019906|ref|ZP_03335697.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
 gi|212994507|gb|EEB55164.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
          Length = 314

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 16 RYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDII 75

Query: 79 KLL 81
           L+
Sbjct: 76 DLI 78



 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +  R     TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL+
Sbjct: 173 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 232


>gi|160914966|ref|ZP_02077180.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991]
 gi|158433506|gb|EDP11795.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991]
          Length = 144

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N+    RK   L+Q+ +  + G ++  IS+ ET ++  +I     LA      L +L+ 
Sbjct: 4  GNHLMMARKRKGLSQESVAEKLGVSRQTISKWETCETLPDICQAKTLATIYGISLDELIT 63


>gi|114570052|ref|YP_756732.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114340514|gb|ABI65794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 136

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R  R E  L+Q+ +  R G +   I + E G   I+   + +LA+ L  P
Sbjct: 18 VGARLRVGRIEFCLSQEALGERFGVSFHQIQKYERGAYRISASRLFVLANALLVP 72


>gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2]
 gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2]
          Length = 118

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +++R+   L+ +E+ +  GFA+S +   E+GK  +++ ++  LA   +  +  
Sbjct: 2  KQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVDS 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
          ATCC 23263]
 gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus
          ATCC 23263]
          Length = 323

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK A+ +Q+E+  + G ++  IS+ E  +S  +++ ++ L+         
Sbjct: 1  MILADKIIYLRKRAEWSQEELAEQMGVSRQSISKWEGAQSIPDMNRLLKLSQIFGVSTDF 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|313207290|ref|YP_004046467.1| transcriptional regulator, xre family [Riemerella anatipestifer
          DSM 15868]
 gi|312446606|gb|ADQ82961.1| transcriptional regulator, XRE family [Riemerella anatipestifer
          DSM 15868]
 gi|315023460|gb|EFT36467.1| XRE family transcriptional regulator [Riemerella anatipestifer
          RA-YM]
 gi|325335235|gb|ADZ11509.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD]
          Length = 101

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          E           R++  +TQ+E+  + G  +S+IS +E   S I +  ++ +  T
Sbjct: 35 ESFQLGVLLEEARRKLGMTQEELAEKCGTNKSYISRIENNASDIRLSTLMKIIQT 89


>gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis
          F0396]
 gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124]
          Length = 229

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   ++Q  +    G ++S     E GK+  N  N+ ILA     
Sbjct: 4  GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGV 56


>gi|294789944|ref|ZP_06755165.1| toxin-antitoxin system, antitoxin component, Xre family
          [Simonsiella muelleri ATCC 29453]
 gi|294482125|gb|EFG29831.1| toxin-antitoxin system, antitoxin component, Xre family
          [Simonsiella muelleri ATCC 29453]
          Length = 58

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               +  R  AK+TQ+ +    G  ++ +S +E G++  + ++++ +A   +  
Sbjct: 4  LGEWVKEARTSAKMTQESLGFELGMTKANVSNMEKGRTNPSFEHILKIAQITNME 58


>gi|282849276|ref|ZP_06258661.1| DNA-binding protein [Veillonella parvula ATCC 17745]
 gi|282580980|gb|EFB86378.1| DNA-binding protein [Veillonella parvula ATCC 17745]
          Length = 290

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R ++ L+Q ++      ++  I++ E+G    +I N+  L+   +  + +LL
Sbjct: 3  FNEKLREYRTQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDELL 62


>gi|219668894|ref|YP_002459329.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219539154|gb|ACL20893.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 83

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLDTPLWK 79
             N    RK   +TQ ++  + G ++S++ E+E     +T++++ +  +A+ L     K
Sbjct: 18 LGLNIAYYRKREGMTQDQLAEKAGMSRSYLGEIEAPNMITTMSLEVLFNIANVLRIKPSK 77

Query: 80 LLK 82
          LL+
Sbjct: 78 LLE 80


>gi|119962680|ref|YP_946768.1| helix-turn-helix domain-containing protein [Arthrobacter
          aurescens TC1]
 gi|119949539|gb|ABM08450.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens
          TC1]
          Length = 213

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +  +T  E    TG + S +S LE+G+    ++ ++ +A     PL +L+
Sbjct: 32 VGPRLRAMRTQRNVTLAEASEATGISVSTLSRLESGQRKPTLELLLPIARLHQVPLEELI 91


>gi|78061653|ref|YP_371561.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77969538|gb|ABB10917.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 185

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLK 82
           R++RK  K+T  ++  R G +  ++S++E G S   + ++  +   L  P    + L K
Sbjct: 14 IRDLRKHRKVTLNDLAERIGRSVGFLSQVERGLSRPTVADLTAIGEVLGVPTTYFYSLSK 73

Query: 83 P 83
          P
Sbjct: 74 P 74


>gi|332202039|gb|EGJ16108.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
          Length = 287

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|312888747|ref|ZP_07748311.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311298747|gb|EFQ75852.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 101

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          E           R E  LTQ+E+  + G  +S+IS++E     +    +  +  T
Sbjct: 35 ENFKIGAMIHEARLEKGLTQEELAEKVGTTKSYISKIENNIKEVRFSTLKKIVET 89


>gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 413

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +R+E  L+Q+ +    G ++  +S+ E+  +  +++N + L+      L +
Sbjct: 1  MTLGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSALPDVNNCVALSRAFGITLAQ 60


>gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681]
 gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681]
          Length = 122

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + +    +R+   L Q+E+    G  ++ +S  E  +   + + +  LA      +  L+
Sbjct: 3  YGSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDYLV 62


>gi|303267506|ref|ZP_07353355.1| hypothetical protein CGSSpBS457_08189 [Streptococcus pneumoniae
          BS457]
 gi|303269644|ref|ZP_07355403.1| hypothetical protein CGSSpBS458_08119 [Streptococcus pneumoniae
          BS458]
 gi|302640846|gb|EFL71234.1| hypothetical protein CGSSpBS458_08119 [Streptococcus pneumoniae
          BS458]
 gi|302642943|gb|EFL73241.1| hypothetical protein CGSSpBS457_08189 [Streptococcus pneumoniae
          BS457]
          Length = 179

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|296453372|ref|YP_003660515.1| XRE family transcriptional regulator [Bifidobacterium longum
          subsp. longum JDM301]
 gi|296182803|gb|ADG99684.1| transcriptional regulator, XRE family [Bifidobacterium longum
          subsp. longum JDM301]
          Length = 92

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK------ST 60
               S    R       N + +R E  LTQ+ +    G ++     +E G+      + 
Sbjct: 2  AVKDDSKEWARYAKELGVNLQRLRVERGLTQERVAYDAGLSRYQYQRMEWGRIGKDTPAN 61

Query: 61 INIDNMIILAHTLDTPLWKLL 81
            +  ++ +A  L   L +LL
Sbjct: 62 PTLKTIMAVAQVLGVTLDELL 82


>gi|295101224|emb|CBK98769.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Faecalibacterium prausnitzii L2-6]
          Length = 272

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RKE  LTQ ++  +       +S+ ETGK   +   M+ L + L   + +LL
Sbjct: 7  GKFIAGCRKEKGLTQAQLAEKLNITDRAVSKWETGKCMPDASIMLELCNILGVTVNELL 65


>gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
          Length = 165

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 3  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62


>gi|228964769|ref|ZP_04125876.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228795019|gb|EEM42518.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 167

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE KLTQ ++       +S +S++E GK+T ++  +  +A  L      LL
Sbjct: 4  LGAKIKTLRKEKKLTQTDLAGSV-LTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|225853739|ref|YP_002735251.1| helix-turn-helix domain protein [Streptococcus pneumoniae JJA]
 gi|225722886|gb|ACO18739.1| helix-turn-helix domain protein [Streptococcus pneumoniae JJA]
          Length = 287

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
 gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM
          12168]
          Length = 331

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RK    +Q+E+ ++   ++  +S+ E+G +   +D +++L+         LL
Sbjct: 3  LAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVPELDKILLLSTLFGVSTDTLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 227

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +  RKE KLTQK+I  + G +    S  E G    + + +  L   L+ P
Sbjct: 5  EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVP 57


>gi|313898339|ref|ZP_07831876.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
 gi|312956721|gb|EFR38352.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2]
          Length = 401

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F      +RK+   TQ ++      +   +S  ET +   +I  +  L+  L     
Sbjct: 3  KEQFAEKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGISCD 62

Query: 79 KLL 81
          +LL
Sbjct: 63 ELL 65


>gi|298254526|ref|ZP_06978112.1| hypothetical protein SpneCM_02795 [Streptococcus pneumoniae str.
          Canada MDR_19A]
          Length = 304

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 168

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK   LTQ+++      +   +S  E G +  +ID +I LA   +  + +L+
Sbjct: 7  GEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNNMPDIDILIELADFYEVDIRELI 65


>gi|251779491|ref|ZP_04822411.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243083806|gb|EES49696.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 164

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L   +    N ++ RK   LTQKE   +   ++  I + E+GK  I +     +A + +
Sbjct: 4  SLTNTINIGKNIKHYRKLEGLTQKEFGAKIHKSEISIRKYESGKGNIPMSTFFDIARSFN 63

Query: 75 TPLWKLLK 82
            +  LL+
Sbjct: 64 INIVDLLR 71


>gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07]
 gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07]
          Length = 403

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++    G +   +S+ E+G S  +I+ + +LA   +  + KLL
Sbjct: 6  GKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64


>gi|166032973|ref|ZP_02235802.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC
           27755]
 gi|166027330|gb|EDR46087.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC
           27755]
          Length = 190

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N + IR+E K TQ+++ ++   ++  +   E G    ++     LA  L   L +L+
Sbjct: 46  NIKKIREEKKYTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLAMELGVTLDELI 102


>gi|157693789|ref|YP_001488251.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157682547|gb|ABV63691.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 134

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R+  K++  ++   +G + + IS +E GK        +  LAH L  P   L
Sbjct: 4  FGEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKRGVPKPLTIKKLAHALKVPYEDL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|40445337|ref|NP_954797.1| hypothetical protein pKB1_p057 [Gordonia westfalica]
 gi|40217367|emb|CAE09118.1| hypothetical protein [Gordonia westfalica]
          Length = 124

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 2   PRRKRDEPHLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
           P R         AI  +               R E K++Q+ +    G +++++  +E G
Sbjct: 37  PERPESMSSDPSAISVDETAVMTAVGAAIIARRTELKISQQALARTVGTSRTFLRGIEAG 96

Query: 58  KSTINIDNMIILAHTLDTPLWKLLK 82
           +    +  +  +A  L T    L+ 
Sbjct: 97  ERAPTVVTLTRIARALHTTPSALIT 121


>gi|22537855|ref|NP_688706.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|76787796|ref|YP_330325.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76798410|ref|ZP_00780651.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 18RS21]
 gi|77405968|ref|ZP_00783047.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae H36B]
 gi|77409450|ref|ZP_00786144.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|22534750|gb|AAN00579.1|AE014269_23 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
 gi|76562853|gb|ABA45437.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76586242|gb|EAO62759.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 18RS21]
 gi|77171942|gb|EAO75117.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77175420|gb|EAO78210.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae H36B]
          Length = 197

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|332826638|gb|EGJ99467.1| hypothetical protein HMPREF9455_00500 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 72

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+   L+  ++ ++     + +  +E G++   +  +  +   LD  L  ++
Sbjct: 10 VGLKIREIRESRDLSMMDLADKLDIEYNNLIRIEKGRTNPTLGTLYKICQALDVKLVDIV 69


>gi|289433492|ref|YP_003463364.1| Lambda repressor-like, DNA-binding domain protein [Listeria
          seeligeri serovar 1/2b str. SLCC3954]
 gi|289169736|emb|CBH26272.1| Lambda repressor-like, DNA-binding domain protein [Listeria
          seeligeri serovar 1/2b str. SLCC3954]
          Length = 111

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  +  R+E  L Q+ +  R    +  IS  E G    N D +  LA   +  L  
Sbjct: 5  KFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKRLDD 64

Query: 80 LL 81
            
Sbjct: 65 FF 66


>gi|281490797|ref|YP_003352777.1| Cro/CI family transcriptional regulator [Lactococcus lactis
          subsp. lactis KF147]
 gi|281374555|gb|ADA64075.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis
          subsp. lactis KF147]
          Length = 68

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R EA+++Q ++ ++ G  +  I  +E+GK   ++   I +   L   L  + 
Sbjct: 4  KKMKMARIEAEMSQADLADKVGATRQTIGLIESGKFNPSLRLCIDICRVLKKTLNDIF 61


>gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 81

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++ R  R  A LTQ E+    G  ++  + +E G    ++   + +A  L+  + +L 
Sbjct: 3  SSLRKARLRAGLTQSEVARLVGLTRASYTNIERGHKNPSVVTALRIAQVLNRSVEELF 60


>gi|255316687|ref|ZP_05358270.1| hypothetical protein CdifQCD-7_20172 [Clostridium difficile
          QCD-76w55]
          Length = 114

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +F   F+ +RKE  LTQ+E+  +      T F +S IS+ E  K    +  +   A+   
Sbjct: 3  LFGERFKGLRKEMGLTQEELVEKFNKLNDTHFNKSTISQYENNKRKPELSILYKWANFYG 62

Query: 75 TPLWKLL 81
            L  +L
Sbjct: 63 VSLDFIL 69


>gi|213019781|ref|ZP_03335584.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212994611|gb|EEB55256.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 302

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQK++ N+ G     I E E G++ ++++ +  +A  L   +  LL
Sbjct: 159 VGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEIAKVLSISIIDLL 218



 Score = 42.7 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ R E   TQK++  + G     I + E G   I I  +  +A  L   +  L+
Sbjct: 9  VGQKVKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEALSVNVKGLV 68


>gi|198244633|ref|YP_002215542.1| XRE family transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
 gi|197939149|gb|ACH76482.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. CT_02021853]
          Length = 185

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 15 LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 74

Query: 82 KP 83
           P
Sbjct: 75 SP 76


>gi|297195394|ref|ZP_06912792.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719236|gb|EDY63144.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 197

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 7  DEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          D     D   RE  +      R  R+   LT   +  R+G +  ++S++E  ++  ++ +
Sbjct: 2  DAKDAKDTKEREEPLRVGAAVRKRRRALGLTLAAVAARSGLSVPFLSQIENERAHPSMRS 61

Query: 66 MIILAHTLDTPLWKLL 81
          +  ++  LDT   +LL
Sbjct: 62 LQRVSDALDTSAERLL 77


>gi|194015481|ref|ZP_03054097.1| YvaO [Bacillus pumilus ATCC 7061]
 gi|194012885|gb|EDW22451.1| YvaO [Bacillus pumilus ATCC 7061]
          Length = 134

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R+  K++  ++   +G + + IS +E GK        +  LAH L  P   L
Sbjct: 4  FGEQLRILRENRKMSVNQLAMYSGVSAAGISRIENGKRGVPKPLTIKKLAHALKVPYEDL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|239917249|ref|YP_002956807.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
 gi|281414274|ref|ZP_06246016.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
 gi|239838456|gb|ACS30253.1| Helix-turn-helix protein [Micrococcus luteus NCTC 2665]
          Length = 101

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R++R+    T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 5  RHEIGDVLRDVRQLQGRTLREVSHDARVSLGYLSEVERGQKEASSELLASICQALDIPLS 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 YLLR 68


>gi|168819389|ref|ZP_02831389.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|205343670|gb|EDZ30434.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Weltevreden str. HI_N05-537]
 gi|320085906|emb|CBY95680.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
          Length = 178

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|169544294|ref|YP_001693069.1| XRE family transcriptional regulator [Yersinia enterocolitica]
 gi|168218478|emb|CAP20221.1| transcriptional regulator, XRE family [Yersinia enterocolitica]
          Length = 83

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
            ++ R  A +TQ+ +    G     A+S +S  ETG      D M + A  LD P
Sbjct: 5  RLKSARLRAGMTQERLGVLAGIDESTARSRVSHYETGTHKPTYDTMCLFAKVLDVP 60


>gi|168260202|ref|ZP_02682175.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|205350640|gb|EDZ37271.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Hadar str. RI_05P066]
 gi|326623288|gb|EGE29633.1| transcriptional regulator, XRE family [Salmonella enterica subsp.
          enterica serovar Dublin str. 3246]
          Length = 178

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   +   +   +G +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLRMLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSMFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|160893918|ref|ZP_02074697.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50]
 gi|156864296|gb|EDO57727.1| hypothetical protein CLOL250_01473 [Clostridium sp. L2-50]
          Length = 65

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          M  VNN + IR+   + Q ++   TGF    IS +E GK T + + M+ ++
Sbjct: 1  MAVVNNLKEIRESRGIIQDDLAAATGFCTRTISRIERGKCTPSAEFMLRIS 51


>gi|146341868|ref|YP_001206916.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278]
 gi|146194674|emb|CAL78699.1| putative transcriptional regulatory protein, XRE family
          [Bradyrhizobium sp. ORS278]
          Length = 271

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
             + R  R+   L+Q ++      +   +S +ETG++  + D ++ LA  LD PL +
Sbjct: 17 VGEHLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVLKLAERLDVPLRE 74


>gi|16078945|ref|NP_389766.1| Xre family transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221309780|ref|ZP_03591627.1| hypothetical protein Bsubs1_10396 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221314102|ref|ZP_03595907.1| hypothetical protein BsubsN3_10327 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221319024|ref|ZP_03600318.1| hypothetical protein BsubsJ_10243 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221323298|ref|ZP_03604592.1| hypothetical protein BsubsS_10362 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81342368|sp|O34647|YOBD_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator
          yobD
 gi|2619003|gb|AAB84427.1| transcription regulator [Bacillus subtilis]
 gi|2634278|emb|CAB13777.1| transcriptional regulator (phage-related, Xre family) [Bacillus
          subtilis subsp. subtilis str. 168]
          Length = 112

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++    R +RK  KLT +++  + G A+S     E       +D ++ILA   D  +  +
Sbjct: 1  MYCQRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYI 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|327404439|ref|YP_004345277.1| XRE family transcriptional regulator [Fluviicola taffensis DSM
          16823]
 gi|327319947|gb|AEA44439.1| transcriptional regulator, XRE family [Fluviicola taffensis DSM
          16823]
          Length = 347

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +N RK   L  +E+ N  G  QS IS+ E GK   +   +I L++ L   L +L
Sbjct: 5  LQNARKAKGLLSRELANLLGVDQSLISKFENGKRLPSEKQLIELSNVLSINLDEL 59


>gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator
          [Clostridium botulinum H04402 065]
          Length = 370

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  + ++A   +  +
Sbjct: 2  EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIATLFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|302551760|ref|ZP_07304102.1| XRE family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
 gi|302469378|gb|EFL32471.1| XRE family transcriptional regulator [Streptomyces
          viridochromogenes DSM 40736]
          Length = 402

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RK    +Q  +  R G + S +S++E G   +       LAH +   L +LL
Sbjct: 23 GANVAVCRKARGFSQVALARRAGVSVSLLSKIEVGDRALTQGIAAALAHAMGLTLDELL 81


>gi|300174082|ref|YP_003773248.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
 gi|299888461|emb|CBL92429.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811]
          Length = 204

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F N+ +N+R +  LTQ ++       +  IS  E  K+  +I N+I L+      L  
Sbjct: 1  MTFGNHLKNVRLQKNLTQDQVAKDFFVTRQTISSWENEKTYPDITNLINLSDYYHISLDT 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|300724905|ref|YP_003714230.1| hypothetical protein XNC1_4123 [Xenorhabdus nematophila ATCC
          19061]
 gi|297631447|emb|CBJ92148.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC
          19061]
          Length = 93

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N   ++R EAKLTQ+++ +R G  +S IS LE GKS   +  ++  A      L
Sbjct: 32 NTLLSMRTEAKLTQQQVADRMGTKESNISRLEKGKSNPTLSTLVNYAKACGFQL 85


>gi|295110793|emb|CBL24746.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 104

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                IR++ KL+Q++     G  +  +S  E G S  NI+ +I+++     P+ ++LK
Sbjct: 12 AKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILISEKFAIPVDEMLK 71


>gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme
          DSM 15981]
 gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme
          DSM 15981]
          Length = 63

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ R+ RK+  L+Q+E+  R G ++  ++ +E  K    +     LA  LDT + +L  P
Sbjct: 3  NSIRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDPTLALAFHLARELDTRVDELFTP 62


>gi|212712673|ref|ZP_03320801.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens
          DSM 30120]
 gi|212684589|gb|EEB44117.1| hypothetical protein PROVALCAL_03770 [Providencia alcalifaciens
          DSM 30120]
          Length = 91

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              ++ R+   LT  E+  R   +Q  IS  E G + I+ D +IIL + L+  
Sbjct: 12 GRMLKDYRRRTGLTGSELAKRINVSQQQISRYENGVNNISFDKLIILFNALEMS 65


>gi|199597846|ref|ZP_03211272.1| transcriptional regulator, PbsX family protein [Lactobacillus
          rhamnosus HN001]
 gi|258509577|ref|YP_003172328.1| transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|199591282|gb|EDY99362.1| transcriptional regulator, PbsX family protein [Lactobacillus
          rhamnosus HN001]
 gi|257149504|emb|CAR88477.1| Transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|259650844|dbj|BAI43006.1| transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 70

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R +  LTQ+++ +R   ++  +S LE G+   ++     L+H  + P+ ++ 
Sbjct: 3  NRIEALRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60


>gi|169333754|ref|ZP_02860947.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259603|gb|EDS73569.1| hypothetical protein ANASTE_00138 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 118

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               +  RK+  LTQ+++      + S +S +E G    ++  ++ LA+ L+  
Sbjct: 8  LGKRLKEQRKKQGLTQEKLAEYVNLSVSHLSHIENGNEKTSLQTIVNLANILNIS 62


>gi|83945188|ref|ZP_00957537.1| transcriptional regulator, XRE family protein [Oceanicaulis
          alexandrii HTCC2633]
 gi|83851358|gb|EAP89214.1| transcriptional regulator, XRE family protein [Oceanicaulis
          alexandrii HTCC2633]
          Length = 467

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E++      R +RKE   TQ +       + S+++ LE  +  +    ++ LA   D 
Sbjct: 6  EKLFAGARLRRLRKELGQTQAQFAESLNVSPSYLNLLERNQRPVTARVLLSLAEAFDV 63


>gi|119773818|ref|YP_926558.1| XRE family transcriptional regulator [Shewanella amazonensis
          SB2B]
 gi|119766318|gb|ABL98888.1| transcriptional regulator, XRE family [Shewanella amazonensis
          SB2B]
          Length = 504

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINI 63
             +++R+        RN+RK   LT +++ +R          + S++S +E GK   + 
Sbjct: 3  SEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVPSA 62

Query: 64 DNMIILAHTLDTPL 77
            + ++A   +   
Sbjct: 63 AMLEVIAKVFEKSP 76


>gi|332796468|ref|YP_004457968.1| XRE family transcriptional regulator [Acidianus hospitalis W1]
 gi|332694203|gb|AEE93670.1| XRE family transcriptional regulator [Acidianus hospitalis W1]
          Length = 190

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  + +R+ A LTQ E+  R G +QS+I+++E GK       +  +   L
Sbjct: 5  FSELKKLRQIAGLTQAELAKRVGVSQSFIAKIENGKIDPKFSIIKKIYDEL 55


>gi|330944238|gb|EGH46330.1| helix-turn-helix domain protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 127

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R  R    L+QK++ +  G +Q  I+ LE   + + +   + L   LD  
Sbjct: 53  AETLRTARLRKGLSQKQLASLIGTSQPHIANLEKSGNDVMLSTAVKLCAALDIE 106


>gi|307707806|ref|ZP_07644283.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261]
 gi|307616066|gb|EFN95262.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261]
          Length = 287

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGDV-LSRTSLSKIESGKATPKYENMDFLLRQMNMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 509

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|255528351|ref|ZP_05395157.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185570|ref|ZP_06853979.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7]
 gi|255507961|gb|EET84395.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049698|gb|EFG89123.1| tetratricopeptide repeat protein [Clostridium carboxidivorans P7]
          Length = 434

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RK+  +T K++          IS +E+GKS  ++D +  LA+ L+T +
Sbjct: 2  EILSLGEKIKRRRKDLNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANALNTSI 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 503

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++RK+  +T        G A S +S +E GK    +  +  LA  L     +LL
Sbjct: 35 LGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENGKREPKLSMLRALARELGVSSDELL 94

Query: 82 K 82
          +
Sbjct: 95 R 95


>gi|229551472|ref|ZP_04440197.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258540781|ref|YP_003175280.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705]
 gi|229315155|gb|EEN81128.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257152457|emb|CAR91429.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705]
          Length = 70

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R +  LTQ+++ +R   ++  +S LE G+   ++     L+H  + P+ ++ 
Sbjct: 3  NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIF 60


>gi|312977847|ref|ZP_07789593.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus crispatus CTV-05]
 gi|310895154|gb|EFQ44222.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus crispatus CTV-05]
          Length = 115

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+ +      NIR+   ++Q E+  + G  ++ ++++E G   ++ D +  +A  L    
Sbjct: 3  EQELLAKKIVNIRESKNMSQLELSKKAGIERTALNKIEKGTRKVSSDELRRIALALHQSS 62

Query: 78 WKLL 81
            LL
Sbjct: 63 DNLL 66


>gi|307709755|ref|ZP_07646206.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619457|gb|EFN98582.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 116

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 13 QKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 70


>gi|294664260|ref|ZP_06729632.1| transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
 gi|292605970|gb|EFF49249.1| transcriptional regulator [Xanthomonas fuscans subsp.
          aurantifolii str. ICPB 10535]
          Length = 113

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTL 73
           R+IF N  R+ R++A+LTQ+ +    G     A++ I+  E G +  ++     LA  L
Sbjct: 6  ARLIFANRLRHARQKAELTQEALGVAAGLAPEVARTRINRYEKGVNECDLRTAKRLADAL 65

Query: 74 DTPL 77
            PL
Sbjct: 66 GMPL 69


>gi|257874839|ref|ZP_05654492.1| predicted protein [Enterococcus casseliflavus EC20]
 gi|257809005|gb|EEV37825.1| predicted protein [Enterococcus casseliflavus EC20]
          Length = 70

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +N  +  RK  KLTQ E+ NR G ++  I  LE G  T ++     +A  L+  L ++
Sbjct: 1  MIINKVQFFRKNKKLTQAELANRVGVSRKTIVSLEKGSYTPSLLLAFQIAKALNMDLTEI 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619]
 gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619]
          Length = 259

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             R  R  A LTQ+++  + G AQ+ IS+LE+GK+  +   ++ +A T    
Sbjct: 5  ERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQRS-SYLMAIASTCGVS 56


>gi|194442417|ref|YP_002040915.1| Cro/CI family transcriptional regulator [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
 gi|194401080|gb|ACF61302.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Newport str. SL254]
          Length = 200

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
          ++
Sbjct: 80 VV 81


>gi|166032258|ref|ZP_02235087.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC
          27755]
 gi|166027981|gb|EDR46738.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC
          27755]
          Length = 213

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RN R  + +TQKE+ ++ G  +S I   E G    +   ++ +A+ L    + L  P
Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70


>gi|254254750|ref|ZP_04948067.1| DNA-binding protein [Burkholderia dolosa AUO158]
 gi|124899395|gb|EAY71238.1| DNA-binding protein [Burkholderia dolosa AUO158]
          Length = 201

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               R +R+  K T  E     G ++ ++S++E G ++ ++ ++  +AH L  
Sbjct: 25 LGGKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAHALGV 78


>gi|331268935|ref|YP_004395427.1| tetratricopeptide repeat/DNA binding domain-containing protein
          [Clostridium botulinum BKT015925]
 gi|329125485|gb|AEB75430.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium
          botulinum BKT015925]
          Length = 432

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++          IS +E+GKS  ++D +  LA++L+  +
Sbjct: 2  EILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNISI 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
 gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
          Length = 166

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 4  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 63


>gi|296330344|ref|ZP_06872825.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305676051|ref|YP_003867723.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          str. W23]
 gi|296152612|gb|EFG93480.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305414295|gb|ADM39414.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii
          str. W23]
          Length = 152

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +     R  RK    +  ++   +G ++S++S++E G     ++  +  ++ TL+  L +
Sbjct: 1  MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKISATLEVELTE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|282866082|ref|ZP_06275130.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559121|gb|EFB64675.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 206

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R+   LT +    R   + + +S LETG+   ++  ++ LA    T + +LL
Sbjct: 18 VAPRLRDLRRNRGLTLETAARRAELSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL 77


>gi|257453722|ref|ZP_05619008.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus
          SK60]
 gi|257448905|gb|EEV23862.1| transcriptional regulator, XRE family [Enhydrobacter aerosaccus
          SK60]
          Length = 106

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          IF   F+  RK  KLTQ+++    G     A + I+  E G    ++  +  +A  LD P
Sbjct: 6  IFTTRFKQARKAKKLTQEQLGIAIGLDEFVASTRINRYEKGIHLPDLQTLARIAEILDVP 65

Query: 77 L 77
           
Sbjct: 66 P 66


>gi|253681993|ref|ZP_04862790.1| xre family DNA-binding domain and TPR-repeat-containing protein
          [Clostridium botulinum D str. 1873]
 gi|253561705|gb|EES91157.1| xre family DNA-binding domain and TPR-repeat-containing protein
          [Clostridium botulinum D str. 1873]
          Length = 432

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++          IS +E+GKS  ++D +  LA++L+  +
Sbjct: 2  EILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANSLNISI 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|227511733|ref|ZP_03941782.1| bifunctional S24 family peptidase/transcriptional regulator
          [Lactobacillus buchneri ATCC 11577]
 gi|227085053|gb|EEI20365.1| bifunctional S24 family peptidase/transcriptional regulator
          [Lactobacillus buchneri ATCC 11577]
          Length = 241

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F  N R +RK+  L+Q  + +R G  + + +SE E+GK T  +  +  +A   +  +  
Sbjct: 1  MFAENLRYLRKKHHLSQTTLAHRLGRKSVASVSEWESGKYTPQLAIIEKIATLFNVDVAD 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM
          12042]
 gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM
          12042]
          Length = 283

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R +A  TQKE+  + G +   IS+ E G S  +I  +  LA      + +++
Sbjct: 20 GQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLPRLAEVFHVSVGEII 78


>gi|154483623|ref|ZP_02026071.1| hypothetical protein EUBVEN_01327 [Eubacterium ventriosum ATCC
          27560]
 gi|149735533|gb|EDM51419.1| hypothetical protein EUBVEN_01327 [Eubacterium ventriosum ATCC
          27560]
          Length = 115

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 29/72 (40%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          + +  ++           N  R  R    LTQ+ +        S IS +E   S ++++ 
Sbjct: 2  KQKDEVAKMKEINYKAISNKIRRKRVSMGLTQEYLATAADVNVSHISNIENCHSKVSLNT 61

Query: 66 MIILAHTLDTPL 77
          ++ +   ++T L
Sbjct: 62 LVYICKAMNTTL 73


>gi|59801268|ref|YP_207980.1| hypothetical protein NGO0867 [Neisseria gonorrhoeae FA 1090]
 gi|194098501|ref|YP_002001563.1| hypothetical protein NGK_0938 [Neisseria gonorrhoeae NCCP11945]
 gi|254493679|ref|ZP_05106850.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594735|ref|ZP_06128902.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268596937|ref|ZP_06131104.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268598888|ref|ZP_06133055.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268601243|ref|ZP_06135410.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603564|ref|ZP_06137731.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682044|ref|ZP_06148906.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268684254|ref|ZP_06151116.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686512|ref|ZP_06153374.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291043928|ref|ZP_06569644.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|293399131|ref|ZP_06643296.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62]
 gi|59718163|gb|AAW89568.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|193933791|gb|ACF29615.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512719|gb|EEH62064.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548124|gb|EEZ43542.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268550725|gb|EEZ45744.1| transcriptional regulator [Neisseria gonorrhoeae FA19]
 gi|268583019|gb|EEZ47695.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268585374|gb|EEZ50050.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587695|gb|EEZ52371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622328|gb|EEZ54728.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268624538|gb|EEZ56938.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626796|gb|EEZ59196.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291012391|gb|EFE04380.1| transcriptional regulator [Neisseria gonorrhoeae DGI2]
 gi|291610545|gb|EFF39655.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62]
          Length = 129

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  + TQ+E+  +   + +  S++E GKS IN+D +  +A   +  + +LL
Sbjct: 6  KIRTLREVNQWTQEEMAEKLEMSVNGYSKIERGKSGINLDKLRQIAQIFNIDVVELL 62


>gi|116618839|ref|YP_819210.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|116097686|gb|ABJ62837.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
          Length = 129

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLD 74
          +  +  F    ++IR++   T ++   +  F+ +++S++E G      ++ +  +A  L 
Sbjct: 1  MVTKEQFGQKIKHIREKKHYTVRQAALQGNFSSAYLSQIENGNKNIPKVETLYRIAKGLR 60

Query: 75 TPLWKLL 81
              ++L
Sbjct: 61 ISKDEIL 67


>gi|330718084|ref|ZP_08312684.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC
          3537]
          Length = 67

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RK  K +Q E+    G  +  I+ +E  K   +++    LA  L   + +L 
Sbjct: 3  NNIKTLRKAQKFSQDELAQAAGVTRQTINAIENDKYDPSLELAFKLASILLVRVDELF 60


>gi|304439390|ref|ZP_07399302.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|304372172|gb|EFM25766.1| XRE family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
          Length = 67

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  +  R    ++Q+++ N  G  +  I  LE G+   ++     +A      + ++
Sbjct: 1  MISNRIKEFRARNSMSQEDLANAVGVRRETIGNLENGRYNPSLVLAWNIAKVFGVTIEEI 60

Query: 81 LK 82
            
Sbjct: 61 FT 62


>gi|302552372|ref|ZP_07304714.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
 gi|302469990|gb|EFL33083.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736]
          Length = 195

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGDYLREQRRNAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes
          FSL J2-003]
          Length = 158

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+   +Q ++ +  GF++  ++  E G    +   ++ +A   +     L
Sbjct: 1  MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|229588939|ref|YP_002871058.1| putative DNA-binding regulatory protein [Pseudomonas fluorescens
          SBW25]
 gi|229360805|emb|CAY47663.1| putative DNA-binding regulatory protein [Pseudomonas fluorescens
          SBW25]
          Length = 175

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  ++G  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF 60


>gi|227357903|ref|ZP_03842249.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC
          29906]
 gi|227161876|gb|EEI46900.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC
          29906]
          Length = 101

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     + +RK + L+  E+    G +Q  +S +E G+   ++  ++ +    D P+  
Sbjct: 5  KILGREIKFLRKRSLLSGCELAKAFGISQQHLSRIERGEVQWSVSFLLRVCAFFDIPMIH 64

Query: 80 LLK 82
           +K
Sbjct: 65 FIK 67


>gi|281420727|ref|ZP_06251726.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella copri DSM 18205]
 gi|281405019|gb|EFB35699.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella copri DSM 18205]
          Length = 104

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R  R+E  LTQK++    G  QS++S++ET +  ++   +  + + +   +   ++
Sbjct: 18 RLRTKREERGLTQKQLAGMLGLPQSYVSKIETCERRMDFIELRSICNLMGISVVDFMQ 75


>gi|225573421|ref|ZP_03782176.1| hypothetical protein RUMHYD_01613 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039231|gb|EEG49477.1| hypothetical protein RUMHYD_01613 [Blautia hydrogenotrophica DSM
          10507]
          Length = 65

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q E+ NR G  +  I  +E G    ++   I +   LD  L  L 
Sbjct: 5  RMKLARMEKDLSQIELANRIGVTRQTIGMIEAGDYNPSLKLCIAICRELDKTLDDLF 61


>gi|221215562|ref|ZP_03588525.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221164550|gb|EED97033.1| DNA-binding protein [Burkholderia multivorans CGD1]
          Length = 342

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+EAK T  E+      +  ++S++E   + I+I +++ +A  L+ PL  L+
Sbjct: 73  GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 131


>gi|188587111|ref|YP_001918656.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351798|gb|ACB86068.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 118

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R +R+ A  TQ+EI  +   ++  I+ +E G   I+  N++ +A  L     ++
Sbjct: 4  ILGEQIRVLRESAGKTQEEIAFKMNCSRQKIARIEKGLVDISYSNILDIARILQISPREI 63


>gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes
          FSL N1-017]
 gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes
          FSL N1-017]
          Length = 158

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+   +Q ++ +  GF++  ++  E G    +   ++ +A   +     L
Sbjct: 1  MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|146300326|ref|YP_001194917.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146154744|gb|ABQ05598.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 131

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N   IR+   + Q+ + +  G  Q  IS +E  + T++   +I +A  LD  
Sbjct: 11 GRNISRIRELKDMKQEALADALGITQQTISNIENSE-TVDEQRLIEIAKALDVS 63


>gi|28210273|ref|NP_781217.1| transcriptional regulator [Clostridium tetani E88]
 gi|28202709|gb|AAO35154.1| transcriptional regulator [Clostridium tetani E88]
          Length = 436

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++          IS +E+GKS  ++D +  L+  LD  +
Sbjct: 4  EILSLGEKIKRRRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLSEALDVSI 62

Query: 78 WKLLK 82
            L++
Sbjct: 63 EYLME 67


>gi|33594034|ref|NP_881678.1| MerR family transcriptional regulator [Bordetella pertussis Tohama
           I]
 gi|33564108|emb|CAE43378.1| probable MerR-family transcriptional regulator [Bordetella
           pertussis Tohama I]
 gi|332383451|gb|AEE68298.1| MerR family transcriptional regulator [Bordetella pertussis CS]
          Length = 279

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 8   EPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
            P   D    +R          FR  R++  ++ +E  + TG   S+IS  E       +
Sbjct: 82  APAPQDPARPKRSANTQQLGRQFRVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAV 141

Query: 64  DNMIILAHTLDTPLWKLLKP 83
            ++  LA    T + +L  P
Sbjct: 142 ASLQRLAACYGTTVTELSAP 161


>gi|332668877|ref|YP_004451885.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484]
 gi|332337915|gb|AEE44498.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC
          484]
          Length = 74

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R  A ++TQ E+  R G  +  +  +E G+ +  ++    +A  L  PL ++ +
Sbjct: 9  NRIRALRFAADEMTQAELARRIGVTRQTVIAIEQGRYSPTLEMAFQIARVLGVPLDEVFQ 68


>gi|323356755|ref|YP_004223151.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323273126|dbj|BAJ73271.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 102

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R++R++   T +++ +R   A  ++SE+E G+   + + +  +A  LD P+ 
Sbjct: 5  RQEIGEVLRDLRQQKGRTLRQVASRASVALGYLSEVERGQKEASSEILASVAEALDVPIS 64

Query: 79 KLLK 82
           +++
Sbjct: 65 SIMR 68


>gi|303229753|ref|ZP_07316533.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302515513|gb|EFL57475.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 100

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPL 77
          R+   +TQ+E+  RTG  QS+IS LE G     I  +  + +  D  PL
Sbjct: 27 RRHYHITQQELAKRTGLLQSYISGLEKGNIDPRISTLCRIVNGFDNMPL 75


>gi|284047025|ref|YP_003397365.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283951246|gb|ADB53990.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 284

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F +  R  R   +++Q E+  R G  Q  +S +E G+S      ++ LA +L+  L +
Sbjct: 12 FASELRRWRNARRVSQLELALRAGTTQRHVSYIEQGRSRPGRTMVVRLAESLELSLRE 69


>gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 165

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 3  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62


>gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US]
 gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US]
          Length = 74

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +F       RK  +LTQ ++  R G + + IS  E G S  +   +  +AH L   +
Sbjct: 5  QAKLFGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKV 64

Query: 78 WKLLK 82
            LL 
Sbjct: 65 DWLLT 69


>gi|158423643|ref|YP_001524935.1| XRE family-like protein [Azorhizobium caulinodans ORS 571]
 gi|158330532|dbj|BAF88017.1| helix-turn-helix XRE-family-like protein [Azorhizobium
          caulinodans ORS 571]
          Length = 217

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+  KLT K++  RTG + S +S++E  + ++  D ++ L + L   + +L 
Sbjct: 15 LGECLKAARQARKLTLKQVAERTGLSLSTLSKVENHQMSLTYDKLLQLTNGLGIAIAELF 74


>gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC
          27756]
 gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC
          27756]
 gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 255

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                +R+E K++Q+E        +  IS  E  K+  ++  ++ ++     PL  +LK
Sbjct: 4  GETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKNYPDLQTLVKISDESGVPLDSMLK 63


>gi|117623603|ref|YP_852516.1| putative regulator [Escherichia coli APEC O1]
 gi|115512727|gb|ABJ00802.1| putative regulator [Escherichia coli APEC O1]
          Length = 139

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++  L+Q ++    G+ QS I   E G   + + + ++L   L     +LL
Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76


>gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp.
          X514]
 gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp.
          X561]
 gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          sp. X513]
 gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp.
          X514]
 gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp.
          X561]
 gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513]
          Length = 137

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+E  L QK++    G   S     E GK   +++ +  L+   +  +  LL
Sbjct: 10 FSQRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLL 69


>gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 79

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                +R+    +Q ++       +  I ++E+GK    I ++  +A  L   L K+
Sbjct: 19 GLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNPTIFSLYEIAIALGVSLSKV 76


>gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 163

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               + RK   LTQ+++ +  G     IS+ ETG+   +I  + ILA  L   + +LLK
Sbjct: 7  GKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEMLGITVNELLK 66


>gi|254237537|ref|ZP_04930860.1| hypothetical protein PACG_03617 [Pseudomonas aeruginosa C3719]
 gi|313112202|ref|ZP_07797979.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|126169468|gb|EAZ54979.1| hypothetical protein PACG_03617 [Pseudomonas aeruginosa C3719]
 gi|310884481|gb|EFQ43075.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 179

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 34/57 (59%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + + ++TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLETLADKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELF 60


>gi|332638098|ref|ZP_08416961.1| hypothetical protein WcibK1_05343 [Weissella cibaria KACC 11862]
          Length = 112

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     +  R++ + TQ  +      ++  IS+ E G +  +ID ++ +++     L  
Sbjct: 1  MILGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDS 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|332523522|ref|ZP_08399774.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314786|gb|EGJ27771.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 121

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLD 74
            ++  F +N + +R E K+ Q E+ ++ G  + S ISE E GK T   D ++ +A    
Sbjct: 2  PTQKSYFPSNLKYLRLEKKMEQLELAHKIGRKSASTISEWENGKYTPKQDILLKVADLFQ 61

Query: 75 TPLWKLL 81
            +  L+
Sbjct: 62 VDINTLV 68


>gi|270299969|gb|ACZ68775.1| hypothetical protein SAP073A_008 [Staphylococcus aureus]
          Length = 72

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|229186773|ref|ZP_04313930.1| Transcription regulator [Bacillus cereus BGSC 6E1]
 gi|228596708|gb|EEK54371.1| Transcription regulator [Bacillus cereus BGSC 6E1]
          Length = 137

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 33/53 (62%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RK   L+Q+++ ++ G  +  IS+ E  K T +I+N+I+L+  ++  L  L+K
Sbjct: 13 RKRNNLSQEQLASKIGVTRQAISKWEQEKGTPDIENLILLSEEMNISLDNLIK 65


>gi|281421595|ref|ZP_06252594.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella
           copri DSM 18205]
 gi|281404350|gb|EFB35030.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella
           copri DSM 18205]
          Length = 128

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%)

Query: 30  RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           RK   +TQ+++ + +  A S I ++E+GK   ++  +  +   L   
Sbjct: 73  RKALGITQQDLADMSEIAISTIKKIESGKGNPSLSTVEKIMDILGME 119


>gi|254381609|ref|ZP_04996973.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194340518|gb|EDX21484.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 231

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R          R    L+++E+  + G   ++I+ LE   ++  I  ++ +A  L   + 
Sbjct: 21 RTDLGRRIAARRTALGLSREELGRKCGADGNYIAYLEEHAASPAIGTLVRMADALGVTVD 80

Query: 79 KL 80
           L
Sbjct: 81 DL 82


>gi|168241225|ref|ZP_02666157.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
 gi|168462878|ref|ZP_02696809.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Newport str. SL317]
 gi|194450536|ref|YP_002045707.1| Cro/CI family transcriptional regulator [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|194408840|gb|ACF69059.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL476]
 gi|195633981|gb|EDX52333.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Newport str. SL317]
 gi|205339118|gb|EDZ25882.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Heidelberg str. SL486]
          Length = 200

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
          ++
Sbjct: 80 VV 81


>gi|115524479|ref|YP_781390.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisA53]
 gi|115518426|gb|ABJ06410.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisA53]
          Length = 119

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     + R+  +LTQ E+  R G +++ ++ +E+G+  + + ++  LA  L+      L
Sbjct: 12 FGRLVASRRRALELTQAELAARVGMSRASVANIESGRQNVLLHHVYSLASALEFSKPADL 71

Query: 82 KP 83
           P
Sbjct: 72 LP 73


>gi|16765008|ref|NP_460623.1| transcriptional regulator [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|168230089|ref|ZP_02655147.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|168260130|ref|ZP_02682103.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|194471773|ref|ZP_03077757.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|197264385|ref|ZP_03164459.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA23]
 gi|204927706|ref|ZP_03218907.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|16420191|gb|AAL20582.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. LT2]
 gi|194458137|gb|EDX46976.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CVM29188]
 gi|197242640|gb|EDY25260.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA23]
 gi|204323048|gb|EDZ08244.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205335305|gb|EDZ22069.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Kentucky str. CDC 191]
 gi|205350683|gb|EDZ37314.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Hadar str. RI_05P066]
 gi|261246856|emb|CBG24672.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. D23580]
 gi|267993597|gb|ACY88482.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301158192|emb|CBW17690.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912655|dbj|BAJ36629.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321224291|gb|EFX49354.1| Putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. TN061786]
 gi|323129933|gb|ADX17363.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 4/74]
 gi|332988551|gb|AEF07534.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Typhimurium str. UK-1]
          Length = 200

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
          ++
Sbjct: 80 VV 81


>gi|56419029|ref|YP_146347.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus
          HTA426]
 gi|56378871|dbj|BAD74779.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus
          HTA426]
          Length = 120

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  + +R + KLT +++ +  G  +   S+ E G+S  +ID +  LA   +     L
Sbjct: 1  MFPNRLKMLRLQKKLTHQDMADFLGITRQGYSKYENGQSQPDIDTINKLAEFFNVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|87120069|ref|ZP_01075965.1| Helix-turn-helix motif protein [Marinomonas sp. MED121]
 gi|86164771|gb|EAQ66040.1| Helix-turn-helix motif protein [Marinomonas sp. MED121]
          Length = 215

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H +   LR         RN R    L   E+   +  +Q  IS++E  + + ++D +  L
Sbjct: 22 HGTSTKLRLEDYIAMQIRNKRVSQNLKISEVARISKISQGMISKIENAQVSTSLDTLGKL 81

Query: 70 AHTLDTPLWKLL 81
            ++   + +L 
Sbjct: 82 CDSIGLSISQLF 93


>gi|85704294|ref|ZP_01035397.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217]
 gi|85671614|gb|EAQ26472.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217]
          Length = 136

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     R  R  +  T   +  + G     + + E+G + +++  + IL++ L  P  +L
Sbjct: 11 IVGRVLRRTRLASGHTMTSLAAQCGVTHQQLQKYESGSNRVSVSRLFILSNALGIPPAEL 70

Query: 81 L 81
          +
Sbjct: 71 I 71


>gi|119384129|ref|YP_915185.1| XRE family transcriptional regulator [Paracoccus denitrificans
          PD1222]
 gi|119373896|gb|ABL69489.1| transcriptional regulator, XRE family [Paracoccus denitrificans
          PD1222]
          Length = 119

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R+ R    +TQ+++  + G     I + ETG + ++   +  +A  +D P
Sbjct: 9  VGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAVDVP 63


>gi|300853248|ref|YP_003778232.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300433363|gb|ADK13130.1| putative DNA binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 67

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
              +  R E  + Q E+ N+ G ++ ++  LE GK    +I  M  ++  LD P+  L 
Sbjct: 2  GLKIKLKRIERGIKQYELANKVGISRYYMQLLEKGKAKNPSIAVMKAISKELDMPVQDLF 61


>gi|237650850|ref|ZP_04525102.1| hypothetical protein SpneC1_09064 [Streptococcus pneumoniae CCRI
          1974]
 gi|237821341|ref|ZP_04597186.1| hypothetical protein SpneC19_03317 [Streptococcus pneumoniae CCRI
          1974M2]
          Length = 178

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|229194113|ref|ZP_04320982.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228589370|gb|EEK47320.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
          Length = 108

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+      ++S I   E  +   + + +I +A         
Sbjct: 2  KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|227820316|ref|YP_002824287.1| XRE family transcriptional regulator [Sinorhizobium fredii
          NGR234]
 gi|227339315|gb|ACP23534.1| transcriptional regulator, XRE family [Sinorhizobium fredii
          NGR234]
          Length = 472

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 30/62 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      R +R+  + TQ +   R G + S+++++E  +  ++   ++ LA      + 
Sbjct: 5  KLYIGRKVRELREANRATQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIA 64

Query: 79 KL 80
          +L
Sbjct: 65 EL 66


>gi|255519174|ref|ZP_05386850.1| putative prophage repressor [Clostridium difficile QCD-97b34]
          Length = 109

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R+   L+QKE       +Q+ IS +E G  T+    +  +    +     LL 
Sbjct: 3  NRIKELRQIKHLSQKEFGETLNLSQNHISSIEKGVRTVTDRTINDICDKYNVNKKWLLT 61


>gi|159897816|ref|YP_001544063.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159890855|gb|ABX03935.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 268

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  R  R+   L+Q ++ +    +   +S LETG+S  + D ++ LA  L+ PL +
Sbjct: 7  GSLIRTWRQRRHLSQLDLASDANISTKHLSFLETGRSLPSRDMLLHLAEHLEVPLRE 63


>gi|284043287|ref|YP_003393627.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283947508|gb|ADB50252.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 88

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + DA    R +     R  R+E  LTQ+ +  RTG  Q  I ELE G        ++ L 
Sbjct: 1  MPDATPFLRAL-GRALRERREELGLTQEAVSLRTGVPQRRIWELEAGIGNPTARTLLRLV 59

Query: 71 HTLDTPLWKLLK 82
            LD P  +L  
Sbjct: 60 SGLDMPCSELFT 71


>gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus
          XylebKG-1]
 gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
          [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus
          XylebKG-1]
          Length = 509

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++      +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|153853196|ref|ZP_01994605.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814]
 gi|149753982|gb|EDM63913.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814]
          Length = 66

 Score = 47.3 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R++ K++Q E+    G  +  I  LE G    ++     +A   +  +  + 
Sbjct: 5  NIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYNPSLVLAAKIAKVFNVTIEDMF 61


>gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300]
 gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300]
          Length = 165

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 3  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62


>gi|300711725|ref|YP_003737539.1| transcriptional regulator, XRE family protein [Halalkalicoccus
          jeotgali B3]
 gi|299125408|gb|ADJ15747.1| transcriptional regulator, XRE family protein [Halalkalicoccus
          jeotgali B3]
          Length = 179

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + R  R E  LTQ  +  R G +Q  I+ +E G     +  +  +   LD
Sbjct: 7  QDLRERRIELDLTQSALAERAGVSQPLIARIEGGDVDPRLSTLRRIVEALD 57


>gi|283786292|ref|YP_003366157.1| phage repressor protein [Citrobacter rodentium ICC168]
 gi|282949746|emb|CBG89365.1| putative phage repressor protein [Citrobacter rodentium ICC168]
          Length = 231

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
           N  R +R    +   ++ +  G   + +S +ETGK  +    ++   A+ L   + +L 
Sbjct: 4  GNRIRELRLARGMKISDLADAVGIDGANVSRVETGKQKSFTEQSLSKYANALGVDVAELF 63

Query: 82 KP 83
           P
Sbjct: 64 TP 65


>gi|168186931|ref|ZP_02621566.1| putative phage related transcriptional regulator [Clostridium
          botulinum C str. Eklund]
 gi|169295256|gb|EDS77389.1| putative phage related transcriptional regulator [Clostridium
          botulinum C str. Eklund]
          Length = 122

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          I     +  R E  LTQ+++  + G + S I ++E+G+   +      LA   +T
Sbjct: 3  IISKRLKESRTEVNLTQQQLAEKIGVSTSIIGDIESGRRVASKKTAKKLADFFNT 57


>gi|167567558|ref|ZP_02360474.1| helix-turn-helix domain protein [Burkholderia oklahomensis EO147]
 gi|167572602|ref|ZP_02365476.1| helix-turn-helix domain protein [Burkholderia oklahomensis C6786]
          Length = 304

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R R      D+I           R  R  A+L  +++ +R   +++ + +LE G+  + 
Sbjct: 9  KRPRGARFDFDSI-------GERLRAYRMAAELRSEDVADRLNISRAAVYKLERGEI-VK 60

Query: 63 IDNMIILAHTLDTPLWKLL 81
          ID +  LA      L  LL
Sbjct: 61 IDTLERLAALFGVSLANLL 79


>gi|163746698|ref|ZP_02154055.1| transcriptional regulator, putative [Oceanibulbus indolifex
          HEL-45]
 gi|161379812|gb|EDQ04224.1| transcriptional regulator, putative [Oceanibulbus indolifex
          HEL-45]
          Length = 430

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R  R  A L Q E+  ++G + S+++ +E  +  I    ++ +A  L      L
Sbjct: 7  GSRIRERRVMAGLKQAELAQQSGISASYLNLIEHNRRRIGGKLLLNIAQALGVEPQAL 64


>gi|159038045|ref|YP_001537298.1| XRE family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916880|gb|ABV98307.1| transcriptional regulator, XRE family [Salinispora arenicola
           CNS-205]
          Length = 524

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           RR           + + M         R+   L+Q+ +    G  Q W+ ++ET ++ ++
Sbjct: 104 RRASAGQGDGVRGMTDDMTIGQRVAFYRRRRGLSQEVLAGLVGKTQEWLRKVETNRADLD 163

Query: 63  -IDNMIILAHTLDTPLWKLL 81
            +  +  +A  LD PL  L+
Sbjct: 164 RLSVIRAIAKALDVPLGDLI 183


>gi|159036440|ref|YP_001535693.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157915275|gb|ABV96702.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 394

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINID---NMIILAHTLDTPL 77
            +  R  R     ++Q  +    G +Q +IS++E+G    +ID    +I +A  L   +
Sbjct: 6  VGSRIRYWRIRRGGMSQTVLAGLAGLSQPYISQVESGHR--SIDRRSTLIAIAAALQVTV 63

Query: 78 WKLL 81
            LL
Sbjct: 64 ADLL 67


>gi|116250534|ref|YP_766372.1| HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae
          3841]
 gi|115255182|emb|CAK06256.1| putative HTH transcriptional regulator [Rhizobium leguminosarum
          bv. viciae 3841]
          Length = 469

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|160878433|ref|YP_001557401.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160427099|gb|ABX40662.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 276

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 26/52 (50%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK  KLTQKE+  + G     +S+ E G S  +I  +  L+  L     +LL
Sbjct: 14 RKIKKLTQKELAAKLGVTDKAVSKWERGLSCPDISLLSTLSDILGVTTGELL 65


>gi|73668235|ref|YP_304250.1| XRE family transcriptional regulator [Methanosarcina barkeri str.
          Fusaro]
 gi|72395397|gb|AAZ69670.1| transcriptional regulator, XRE family [Methanosarcina barkeri
          str. Fusaro]
          Length = 74

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R    LTQ+ +  + G  +  I  +E GK   +++    LA   D  +  + 
Sbjct: 3  NNIKVYRAMHDLTQENLAEKVGVTRQTIHAIEKGKYDPSLELAFKLARLFDVRIEDIF 60


>gi|84687568|ref|ZP_01015443.1| hypothetical protein 1099457000232_RB2654_21803 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664358|gb|EAQ10847.1| hypothetical protein RB2654_21803 [Rhodobacterales bacterium
           HTCC2654]
          Length = 113

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R++   +  R  R    LTQ ++   +G  +  I+++E G+   ++  +  LA  L  
Sbjct: 48  VDRILNGESPLRVWRAYRGLTQVKLSEMSGVNRVQIADIEAGRKNGSVATLKALAGALGV 107

Query: 76  PLWKLL 81
            + +++
Sbjct: 108 TIDEIV 113


>gi|94985466|ref|YP_604830.1| putative prophage repressor [Deinococcus geothermalis DSM 11300]
 gi|94555747|gb|ABF45661.1| LexA-like repressor [Deinococcus geothermalis DSM 11300]
          Length = 236

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M RR +      D        +       R +  L+Q+      G +Q + SE+E G+  
Sbjct: 1  MARRPKLTTIKPD--------WARALEIRRLQLGLSQELAAEAGGLSQPYYSEIERGERE 52

Query: 61 INIDN---MIILAHTLDTPLWKL 80
          +       ++ LA  L   L  L
Sbjct: 53 LTTLTHSKLLGLARALGWTLADL 75


>gi|331087784|ref|ZP_08336710.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330409765|gb|EGG89201.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 181

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R+E  LTQ+++ ++   ++  +   E G    ++     LA  LD  + +L+
Sbjct: 37 NIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDELI 93


>gi|324991594|gb|EGC23527.1| transcriptional regulator [Streptococcus sanguinis SK353]
          Length = 158

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N + +RK  +LTQ E     G +++ +S  E G S I+ + +  +    +     +
Sbjct: 1  MIGDNIKYLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|325970042|ref|YP_004246233.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324025280|gb|ADY12039.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 353

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  R  +  + + +  + G + + I + E G+S  +   +I LA +L       
Sbjct: 1  MFAERLKRARVSSGFSMQNLATKVGISANMIKKYEHGESMPSSATLIRLAASLGLKSEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6]
          Length = 109

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  R++A  TQ  +    G   + +S +E G S I+++ +  L   L     +++
Sbjct: 12 GGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGVSADRII 70


>gi|293568751|ref|ZP_06680065.1| putative transcriptional regulator [Enterococcus faecium E1071]
 gi|291588468|gb|EFF20302.1| putative transcriptional regulator [Enterococcus faecium E1071]
          Length = 410

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             +     + R  R+E   TQ+ +  + G ++S +S++E G   ++ + + ++  +L  
Sbjct: 3  QVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLILDSLQE 62

Query: 76 PLW 78
           L 
Sbjct: 63 ELV 65


>gi|257871213|ref|ZP_05650866.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805377|gb|EEV34199.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 67

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R++  L+Q  +    G A+  I+ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRVREFRQKMNLSQNALAKEIGVARQTINLIENNKYNPSLDLCIKLAKVLQTDLNSLF 59


>gi|256842347|ref|ZP_05547850.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262384742|ref|ZP_06077875.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301312235|ref|ZP_07218152.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 20_3]
 gi|256735954|gb|EEU49285.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262293723|gb|EEY81658.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300829657|gb|EFK60310.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 20_3]
          Length = 154

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R+   +N  + R+   L QK + +  G +Q  +S++E+ K  ++ + +  +A      L
Sbjct: 10 QRVHHGHNIASARRMKGLVQKTLADLLGMSQQRLSQIESTKI-VSDEILQKVAEITGVSL 68

Query: 78 WKL 80
            L
Sbjct: 69 EDL 71


>gi|302517506|ref|ZP_07269848.1| transcriptional regulator [Streptomyces sp. SPB78]
 gi|302426401|gb|EFK98216.1| transcriptional regulator [Streptomyces sp. SPB78]
          Length = 398

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R+    +Q  I    G +  ++S +E G++  ++  +  LA  L  P+  LL
Sbjct: 4  LGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALL 63


>gi|240949823|ref|ZP_04754152.1| hypothetical protein AM305_01724 [Actinobacillus minor NM305]
 gi|240295740|gb|EER46435.1| hypothetical protein AM305_01724 [Actinobacillus minor NM305]
          Length = 186

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+  + TQ+E+  +   +    +++E G +  N+D +  ++      + +LL
Sbjct: 58  EKIRQLREARQWTQEEMATKLSMSTQGYAKIERGDTRSNLDRLEQISEVFGIDMVELL 115


>gi|219853616|ref|YP_002470738.1| hypothetical protein CKR_0273 [Clostridium kluyveri NBRC 12016]
 gi|219567340|dbj|BAH05324.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 186

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +R +  LT K +  +TG +  ++S+ E G +TI ++++  +A  L+ 
Sbjct: 11 GEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNV 63


>gi|153952958|ref|YP_001393723.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146345839|gb|EDK32375.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 179

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +R +  LT K +  +TG +  ++S+ E G +TI ++++  +A  L+ 
Sbjct: 4  GEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNV 56


>gi|13471465|ref|NP_103031.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
 gi|14022207|dbj|BAB48817.1| probable transcriptional regulator [Mesorhizobium loti
          MAFF303099]
          Length = 187

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R     +  E+  R+G +++ +S +E G ++     ++ +A      L  L+
Sbjct: 13 GRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFGMTLSTLI 71


>gi|330835893|ref|YP_004410621.1| XRE family transcriptional regulator [Metallosphaera cuprina
          Ar-4]
 gi|329568032|gb|AEB96137.1| XRE family transcriptional regulator [Metallosphaera cuprina
          Ar-4]
          Length = 184

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           + R +R+ A LTQ E+  R G +QS+I+++E G     +  +  +   L  PL ++
Sbjct: 6  KDLRKMRESAGLTQSELAKRVGVSQSYIAKIEKGSVDPRLSIVRRIMDELS-PLIEI 61


>gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
 gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937]
          Length = 66

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +R+    +Q E+  + G ++  I+ LETGK   ++     +A     P+ ++ 
Sbjct: 3  SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYDPSLPLAFRIARLFGEPIEQVF 60


>gi|307137999|ref|ZP_07497355.1| putative regulator [Escherichia coli H736]
 gi|331641924|ref|ZP_08343059.1| putative regulator [Escherichia coli H736]
 gi|331038722|gb|EGI10942.1| putative regulator [Escherichia coli H736]
          Length = 140

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++  L+Q ++    G+ QS I   E G   + + + ++L   L     +LL
Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76


>gi|302388002|ref|YP_003823824.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302198630|gb|ADL06201.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 138

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLW 78
          M+F    +  R EA LTQ E+  + G     I   E G    + +  +  +A  L+T   
Sbjct: 1  MVFKERLKEKRTEANLTQVELAEKAGVTARTIQNYELGSRKPSNMVTIQKIADALNTTTE 60

Query: 79 KLL 81
           LL
Sbjct: 61 YLL 63


>gi|289450287|ref|YP_003474554.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|289184834|gb|ADC91259.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
          Length = 243

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N R  RK  KLTQ ++ +     ++ +++ E+G+  +++  +  +A  L   L +L
Sbjct: 13 IIGDNIRFFRKRLKLTQSDLGSLINKGKATVAKYESGQIILDVQTLYEIARALGVNLEQL 72

Query: 81 L 81
          L
Sbjct: 73 L 73


>gi|264678025|ref|YP_003277932.1| regulatory protein [Comamonas testosteroni CNB-2]
 gi|262208538|gb|ACY32636.1| putative regulatory protein [Comamonas testosteroni CNB-2]
          Length = 102

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +F+      R +A LTQ ++       Q+W+S++E G   +++  + +  + LD PL
Sbjct: 34 KVFLKLLMQSRLDAGLTQVQLAELLEEDQTWVSKVERGVRRLDLVELTLWCNALDLPL 91


>gi|304317550|ref|YP_003852695.1| XRE family transcriptional regulator [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302779052|gb|ADL69611.1| transcriptional regulator, XRE family [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 438

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IRK  K+ Q+E++++    + +IS +E+G+ST++ +    +A  L+ 
Sbjct: 7  GERLKKIRKMLKMKQRELQDK-NITRGFISMIESGRSTMSKETASAIAKKLNK 58


>gi|255036855|ref|YP_003087476.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254949611|gb|ACT94311.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 192

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +RK   +T +EI +  G  +S +S++E  ++  ++  M+ L   LD  L    K
Sbjct: 11 NKLKEVRKSKGVTLQEIADEAGVTKSLVSQIENSRTIPSLPVMLGLIKALDIDLNVFFK 69


>gi|254466890|ref|ZP_05080301.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
 gi|206687798|gb|EDZ48280.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
          Length = 218

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R++R+   +   ++   TG + + +S +E G+    +  ++ +A      L     
Sbjct: 32 GPKLRSLRQGKDMGLAQLGEHTGLSAAMLSRIERGQVFPTLATLLRIAMVFGVGLDHFFG 91

Query: 83 P 83
          P
Sbjct: 92 P 92


>gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72]
 gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057]
          Length = 242

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  R E  +TQ EI +     +S  +  E+G++  N  N+  LA  L   
Sbjct: 17 GKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALASILGVS 70


>gi|318062399|ref|ZP_07981120.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG]
 gi|318077608|ref|ZP_07984940.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF]
          Length = 398

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R+    +Q  I    G +  ++S +E G++  ++  +  LA  L  P+  LL
Sbjct: 4  LGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALL 63


>gi|310830502|ref|YP_003965603.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2]
 gi|309249969|gb|ADO59535.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2]
          Length = 291

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 17  RERMI---FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHT 72
            ER I   F +  +++R+    T  ++   TG + S+I+ +E G+  + ++  +  LA  
Sbjct: 149 TERAISDNFGSLIKHLRERKGYTLDDMSISTGISSSYINRIEKGERKSPSVKVIQKLATA 208

Query: 73  LDTPLWKLL 81
           LDT    LL
Sbjct: 209 LDTNYMDLL 217


>gi|308186781|ref|YP_003930912.1| hypothetical protein Pvag_1273 [Pantoea vagans C9-1]
 gi|308057291|gb|ADO09463.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea
          vagans C9-1]
          Length = 185

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +R+    +      RTG +++ + ++E G+S+  +  +  +A   + P
Sbjct: 12 LRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62


>gi|331647421|ref|ZP_08348513.1| putative regulator [Escherichia coli M605]
 gi|331043145|gb|EGI15283.1| putative regulator [Escherichia coli M605]
          Length = 139

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++  L+Q ++    G+ QS I   E G   + + + ++L   L     +LL
Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76


>gi|296533427|ref|ZP_06896012.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
 gi|296266247|gb|EFH12287.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
          Length = 189

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +  E+  R+G +++ IS++E  + +     +  L+      L +LL
Sbjct: 10 LAQRLKTEREARGWSLSELAERSGVSKAMISKIERDEVSPTAALLGRLSGAFGLSLSQLL 69


>gi|257868230|ref|ZP_05647883.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874497|ref|ZP_05654150.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257802344|gb|EEV31216.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808661|gb|EEV37483.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 176

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+M F    + +R    LTQ++   +    +  +S  E  ++  +++ +I +A      L
Sbjct: 18 EKMEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFQLSL 77

Query: 78 WKLL 81
           +L+
Sbjct: 78 DELI 81


>gi|237733365|ref|ZP_04563846.1| predicted protein [Mollicutes bacterium D7]
 gi|229383577|gb|EEO33668.1| predicted protein [Coprobacillus sp. D7]
          Length = 79

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +R E  LTQ E+   TG  +S I+  E  +    +D +I LA+     L  L
Sbjct: 4  GKRLRKLRIEHNLTQNEVSILTGIKRSSIASYELNEQLPPVDKLIQLANLYKVSLDYL 61


>gi|225376748|ref|ZP_03753969.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans
          DSM 16841]
 gi|225211374|gb|EEG93728.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans
          DSM 16841]
 gi|291524817|emb|CBK90404.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291528861|emb|CBK94447.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
 gi|291539146|emb|CBL12257.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 67

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  L+Q+E+  +    +  I+ LE GK   ++   I +   L+  L  L 
Sbjct: 5  RLKLARVEMNLSQEELAAKVNVTRPTINLLEGGKFNPSLQLCIRICKVLNKTLNDLF 61


>gi|295836675|ref|ZP_06823608.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. SPB74]
 gi|197699706|gb|EDY46639.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. SPB74]
          Length = 276

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          D        F  + R +R     TQ+E+  R G + S +S +ETG+    
Sbjct: 8  DPARSPGEAFGEHLRRLRDGQGWTQEELAARMGISASHVSAVETGRRPPT 57


>gi|167770416|ref|ZP_02442469.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM
          17241]
 gi|167667423|gb|EDS11553.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM
          17241]
          Length = 112

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N + +R+   ++Q+ + +  G  +      ETGK   +   ++ LA      +  LL+P
Sbjct: 3  NLKALRESKGVSQQTVADYLGITRQAYGNYETGKRQADYAALLRLAAFFGVSVDALLQP 61


>gi|148994310|ref|ZP_01823574.1| hypothetical protein CGSSp9BS68_07247 [Streptococcus pneumoniae
          SP9-BS68]
 gi|168489414|ref|ZP_02713613.1| helix-turn-helix domain protein [Streptococcus pneumoniae SP195]
 gi|147927340|gb|EDK78372.1| hypothetical protein CGSSp9BS68_07247 [Streptococcus pneumoniae
          SP9-BS68]
 gi|183572073|gb|EDT92601.1| helix-turn-helix domain protein [Streptococcus pneumoniae SP195]
 gi|332075783|gb|EGI86250.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17570]
 gi|332204131|gb|EGJ18196.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 287

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|154687854|ref|YP_001423015.1| putative transcriptional regulator [Bacillus amyloliquefaciens
          FZB42]
 gi|126363018|emb|CAM35832.1| hypothetical protein RBAM03558 [Bacillus amyloliquefaciens FZB42]
 gi|154353705|gb|ABS75784.1| putative transcriptional regulator [Bacillus amyloliquefaciens
          FZB42]
          Length = 67

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +R  A ++Q ++       +  I+ +E  K    +     +AH L+T + K+ 
Sbjct: 3  NNIKKLRTAADISQNDLAKLCNVTRQTINAIENNKYDPTLSLAFSIAHALNTGIDKVF 60


>gi|25012010|ref|NP_736405.1| hypothetical protein gbs1972 [Streptococcus agalactiae NEM316]
 gi|76787285|ref|YP_330541.1| transcriptional regulator [Streptococcus agalactiae A909]
 gi|24413553|emb|CAD47631.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562342|gb|ABA44926.1| transcriptional regulator, putative [Streptococcus agalactiae
          A909]
          Length = 164

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +R+   +TQ E+ N+ G  +   +  E  KS  +I  +  +A   +  +  
Sbjct: 1  MTFAKRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDY 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|270654679|ref|ZP_06222291.1| DNA-binding protein [Haemophilus influenzae HK1212]
 gi|270317067|gb|EFA28714.1| DNA-binding protein [Haemophilus influenzae HK1212]
          Length = 81

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  +L+Q+++  +   + S  +++E G++ +  D ++ +A   +  L  L+
Sbjct: 6  KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62


>gi|257065731|ref|YP_003151987.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
 gi|256797611|gb|ACV28266.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM
          20548]
          Length = 296

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + IF    ++IR +  L+Q+ +   +      IS +E  K   ++DN+  L+  L   L 
Sbjct: 5  KYIFGKFLKDIRNKRNLSQERLAELSFINIKTISNMENAKVNFDLDNLDRLSSILFVDLI 64

Query: 79 K 79
          +
Sbjct: 65 E 65


>gi|116511497|ref|YP_808713.1| XRE family transcriptional regulator [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116107151|gb|ABJ72291.1| Transcriptional regulator, xre family [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 85

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N RN R    LTQ ++  +  F++  +   E GK   NI+ +  LA   +  + KL++
Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVDKLIR 85


>gi|172057104|ref|YP_001813564.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171989625|gb|ACB60547.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 395

 Score = 47.3 bits (111), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK  KLTQ ++ +     +S +S +E  K+T ++  +  +AH L   +  L
Sbjct: 1  MLGQRIKSLRKAKKLTQSDVADGI-MTKSMLSMIENEKATPSLPALQSIAHRLHVSIDAL 59

Query: 81 L 81
          L
Sbjct: 60 L 60


>gi|325291464|ref|YP_004277328.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325059317|gb|ADY63008.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 121

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R +R+   +TQKE+    G + +++S LE GK    + D +  +A   + 
Sbjct: 4  FAEAVRLLRERKGVTQKEMAAAIGVSPAYLSALEHGKRGKPSFDLLQRIAGYFNI 58


>gi|311110004|ref|YP_003982855.1| helix-turn-helix domain-containing protein 1 [Achromobacter
          xylosoxidans A8]
 gi|310764693|gb|ADP20140.1| helix-turn-helix domain protein 1 [Achromobacter xylosoxidans A8]
          Length = 96

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       R +RK   L+Q+   + +  +++++S LE    +  +  +  +   L+   
Sbjct: 3  AKHSLAAALRTVRKARGLSQEAFSDVS--SRTYLSVLERDLKSPTLSKLSDICDVLNVHP 60

Query: 78 WKLL 81
            LL
Sbjct: 61 VTLL 64


>gi|295425504|ref|ZP_06818196.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
          11664]
 gi|295064795|gb|EFG55711.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
          11664]
          Length = 121

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
            +     R++ KLTQ+++   +G + ++IS LE  K+  I+I  +  +A  L+T    +
Sbjct: 5  LGDEISRRRRDQKLTQEDLAELSGLSVNFISRLERTKNQNISIQKLDSIACALNTTTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|291534410|emb|CBL07522.1| Helix-turn-helix [Roseburia intestinalis M50/1]
          Length = 242

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RER+I       IRKE  L+Q ++    G +++    +E GK  +    + +LA     P
Sbjct: 9  RERII------QIRKERGLSQNQLAKDFGISRTHYCNVENGKKPVTESFLKVLASGYKIP 62

Query: 77 L 77
          +
Sbjct: 63 M 63


>gi|229815069|ref|ZP_04445406.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM
          13280]
 gi|229809299|gb|EEP45064.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM
          13280]
          Length = 206

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ +  R E  L+Q ++  R   ++  IS  E G++  ++ ++++L++     +  L+
Sbjct: 3  LGSHIKEHRTELGLSQDDLAERIYVSRQTISNWECGRTYPDVQSLLLLSNVFGVTVDSLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|307153522|ref|YP_003888906.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822]
 gi|306983750|gb|ADN15631.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822]
          Length = 533

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R+K+   + S        +        RK   ++Q+E+    G +QSWI +LE G+    
Sbjct: 460 RKKQQRINKSPKSKTSHRLSAEQILTARKRQGISQRELAQMIGKSQSWIRDLERGRFCAK 519

Query: 63  IDNMIILAHTLD 74
            ++ + L   L+
Sbjct: 520 PEDQVRLQKILN 531


>gi|114565053|ref|YP_752567.1| transcriptional regulator, XRE family protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114336346|gb|ABI73728.1| transcriptional regulator, XRE family [Shewanella frigidimarina
          NCIMB 400]
          Length = 511

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINIDN 65
           +++R+        RN+RK   LT +++  R          + S++S +E GK   + D 
Sbjct: 5  KSLMRKTHFLGTKIRNLRKRNNLTMEDLSARCVRVDSGNSPSVSYLSMIERGKRVPSADM 64

Query: 66 MIILAHTLDTP 76
          + ++A      
Sbjct: 65 LAVIAVVFQKE 75


>gi|332976082|gb|EGK12950.1| helix-turn-helix domain protein [Desmospora sp. 8437]
          Length = 359

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R++  +TQ+++    G ++  I+  E G+ST  +  +  LA TL  P+  LL
Sbjct: 9  QLRPLREQLTVTQEDLGRSVGVSRQTIAAWEKGESTPTVAQLFSLARTLGVPVEILL 65


>gi|307707599|ref|ZP_07644080.1| putative transcriptional regulator [Streptococcus mitis NCTC
          12261]
 gi|307616312|gb|EFN95504.1| putative transcriptional regulator [Streptococcus mitis NCTC
          12261]
          Length = 116

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 13 QKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEITPEEFF 70


>gi|294992409|gb|ADF57341.1| transcriptional regulator [Roseburia inulinivorans DSM 16841]
          Length = 142

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     + +RK    TQ  +    G  +   S  ETGK T + +    LA   +  +  
Sbjct: 4  KLLPQKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDD 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC
          33313]
 gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC
          33313]
          Length = 140

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  +  RKE  ++Q+E   +   ++  +S  E  K+  +ID++I +++  D  L +L+K
Sbjct: 15 NKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKTLPDIDHLIDISNLYDLSLDELIK 73


>gi|227501064|ref|ZP_03931113.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
          35098]
 gi|227216837|gb|EEI82235.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
          35098]
          Length = 95

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE  + Q ++ N  G ++  IS +E G    ++   + LA   D  +  + 
Sbjct: 31 NKLSEIRKEKGINQTDLGNMVGVSRQTISLIERGDYNPSVMVALSLARVFDMRVEDIF 88


>gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 125

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 39/66 (59%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + +++ F    + +RKE  +TQ+E+ ++ G  ++ I+  ETG++  + + + ++A+ L T
Sbjct: 1  MTDKIKFKERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILST 60

Query: 76 PLWKLL 81
              LL
Sbjct: 61 TTDYLL 66


>gi|71906945|ref|YP_284532.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Dechloromonas aromatica RCB]
 gi|71846566|gb|AAZ46062.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB]
          Length = 273

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK  KL+Q+++    G +Q  I  +E+G+    ++    L   L  P+  + 
Sbjct: 3  NRVQQFRKALKLSQRQLAEAVGTSQQQIQRIESGQIAAKLEMAAKLCAALQKPMEVVF 60


>gi|9635582|ref|NP_061565.1| cI repressor protein [Pseudomonas phage D3]
 gi|2493333|sp|Q37906|RPC1_BPD3 RecName: Full=Repressor protein CI
 gi|1085700|pir||A55847 cI repressor homolog - Pseudomonas aeruginosa phage D3
 gi|403436|gb|AAA53553.1| cI repressor protein [Pseudomonas phage D3]
          Length = 223

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78
            +  RK AKLTQ ++  R G  Q+ IS LE GKS      +  LA       LW
Sbjct: 6  RIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGT-SYIAQLASACGVSALW 59


>gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110]
          Length = 196

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R +A +T  E+  R+G +++ I  +E  +S+     +  L   LD  L  ++
Sbjct: 14 GRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSATAALLNKLCAALDVTLSDVV 72


>gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5]
 gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5]
          Length = 165

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 3  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62


>gi|324993316|gb|EGC25236.1| transcriptional regulator [Streptococcus sanguinis SK405]
 gi|325694019|gb|EGD35937.1| transcriptional regulator [Streptococcus sanguinis SK150]
 gi|327461585|gb|EGF07916.1| transcriptional regulator [Streptococcus sanguinis SK1]
 gi|327473309|gb|EGF18729.1| transcriptional regulator [Streptococcus sanguinis SK408]
 gi|327489444|gb|EGF21237.1| transcriptional regulator [Streptococcus sanguinis SK1058]
          Length = 108

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102


>gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 255

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R +  ++Q E+  +   ++  +S  E G++  N + + +L+  LD  +  LL
Sbjct: 9  ELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVLDVSINTLL 62


>gi|288904825|ref|YP_003430047.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|288731551|emb|CBI13106.1| putative transcriptional regulator [Streptococcus gallolyticus
          UCN34]
          Length = 65

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R    ++Q  +  + G A+  ++ +E  K   ++D  I LA  L T L  L 
Sbjct: 2  NRVREFRLNLGISQLALAKQIGVARQTVNLIENNKYNPSLDLCIKLAEALQTDLNTLF 59


>gi|257056503|ref|YP_003134335.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
 gi|256586375|gb|ACU97508.1| Helix-turn-helix protein [Saccharomonospora viridis DSM 43017]
          Length = 158

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R   + T ++I      +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REAIGDRLRHARTTKRRTLRDISRAAKVSLGYLSEVERGQKEASSELLASICEALELPLG 65

Query: 79 KLL 81
          +LL
Sbjct: 66 ELL 68


>gi|260587016|ref|ZP_05852929.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM
          20583]
 gi|260542638|gb|EEX23207.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM
          20583]
          Length = 120

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   L+Q E+ N  G ++  IS+ E  +S  +   +++L+      L  L+
Sbjct: 3  FNEKLIELRKSKGLSQDELGNALGVSRQTISKWELAQSYPDFQRLVLLSDYFGLSLDALV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|218132335|ref|ZP_03461139.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC
          43243]
 gi|291086949|ref|ZP_06344978.2| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
 gi|217992673|gb|EEC58675.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC
          43243]
 gi|291076456|gb|EFE13820.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. M62/1]
          Length = 204

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST--INIDNMIILAHTLDTPL 77
            F +  + +R     TQ+E+   T  +   I   E G+     +  N++ LA  LD   
Sbjct: 30 KTFADRLKELRNIRNYTQEELGKITNISVQSIRRYEQGRLNEEPSAYNLLQLAKALDVTP 89

Query: 78 WKLL 81
            LL
Sbjct: 90 EYLL 93


>gi|218133297|ref|ZP_03462101.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC
          43243]
 gi|217992170|gb|EEC58174.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC
          43243]
          Length = 154

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F++    +RKE   TQ+E+ ++ G  +  +S    G+    +  ++ +A  L   +  
Sbjct: 34 ETFISRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGERVPTVTTIVSIAQVLGASVDY 93

Query: 80 LL 81
          L+
Sbjct: 94 LV 95


>gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365]
 gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686]
 gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4
          str. 40]
 gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
 gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365]
 gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4
          str. 40]
 gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
          Length = 182

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMVEFF 64


>gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae
          EF01-2]
 gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2]
          Length = 178

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 7/62 (11%), Positives = 25/62 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +       +R    ++ + +    G + + +S++E G +  ++  +  L+      +  L
Sbjct: 1  MLGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTEPSLSTLRALSAVFGESMAAL 60

Query: 81 LK 82
           +
Sbjct: 61 FR 62


>gi|222053496|ref|YP_002535858.1| plasmid maintenance system antidote protein, XRE family [Geobacter
           sp. FRC-32]
 gi|221562785|gb|ACM18757.1| plasmid maintenance system antidote protein, XRE family [Geobacter
           sp. FRC-32]
          Length = 116

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R    LTQK +   TG  Q  ISE+E GK +I  +    LA  L+    +LL
Sbjct: 61  LRAYRNREGLTQKRLAEMTGIPQHHISEMENGKRSIGKERAKRLAEALNCDYRRLL 116


>gi|36958742|gb|AAQ87210.1| Transcriptional regulator [Sinorhizobium fredii NGR234]
          Length = 181

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M      R +RK   LT +++ +    +  ++S++E  ++ + I  +  ++ TL  
Sbjct: 1  MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGV 56


>gi|89896410|ref|YP_519897.1| hypothetical protein DSY3664 [Desulfitobacterium hafniense Y51]
 gi|89335858|dbj|BAE85453.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 103

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 7  DEPHLSDAILR-ERM------IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          D  +  + +   ER         +      R+   L+QK++ +  G  Q  I+ LE+ K+
Sbjct: 15 DLYNDPNIVPPAERAKIDFEVALIGKLIEAREAKGLSQKQLADLAGLKQPAIARLESMKA 74

Query: 60 TINIDNMIILAHTLDTPL 77
          T  ID +  + H L   L
Sbjct: 75 TPQIDTLFKILHPLGYTL 92


>gi|16760810|ref|NP_456427.1| regulator [Salmonella enterica subsp. enterica serovar Typhi str.
          CT18]
 gi|25512966|pir||AG0738 probable regulator STY2066 [imported] - Salmonella enterica
          subsp. enterica serovar Typhi (strain CT18)
 gi|16503107|emb|CAD05610.1| putative regulator [Salmonella enterica subsp. enterica serovar
          Typhi]
 gi|323977012|gb|EGB72099.1| helix-turn-helix protein [Escherichia coli TW10509]
 gi|324012832|gb|EGB82051.1| helix-turn-helix protein [Escherichia coli MS 60-1]
          Length = 139

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R++  L+Q ++    G+ QS I   E G   + + + ++L   L     +LL
Sbjct: 18 AMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVLGKALGISPPELL 76


>gi|325690086|gb|EGD32090.1| transcriptional regulator [Streptococcus sanguinis SK115]
          Length = 108

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102


>gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 197

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER I  +  + +R +  LT   +   +G +++ IS +E G+++     +  +   L   L
Sbjct: 14 ERSI-GDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEASPTASLLARICAALGLSL 72


>gi|300854654|ref|YP_003779638.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300434769|gb|ADK14536.1| predicted transcription regulator with a HTH motif [Clostridium
          ljungdahlii DSM 13528]
          Length = 231

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 27/57 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +F +  +  R++  LTQ+++  +   +++ I +LETG    +   +  +       +
Sbjct: 1  MFSDKLKRYRRDLGLTQRDLGRKLDLSKATIGQLETGLKEPSRILLEKIYKISGKNM 57


>gi|294787002|ref|ZP_06752256.1| putative Helix-turn-helix domain protein [Parascardovia denticolens
           F0305]
 gi|294485835|gb|EFG33469.1| putative Helix-turn-helix domain protein [Parascardovia denticolens
           F0305]
          Length = 170

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%)

Query: 10  HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           H  D+ +  R +     R++R +   T +EI  R G +  ++SE+E G+   + + +  +
Sbjct: 69  HQDDSEISLRKVQGGVLRSLRTKDHKTLREISERAGVSLGYLSEVERGQKEASSELLTSI 128

Query: 70  AHTLDTPLWKLL 81
              L   L  +L
Sbjct: 129 TEALGVRLSDML 140


>gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
 gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
          Length = 117

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RKEA LTQ+E+      +Q  I   E G+    I+ +  +A   +     L
Sbjct: 1  MFPKRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGERKPKIEAINNIAKYFNVSTEYL 60


>gi|229182053|ref|ZP_04309349.1| transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|228601468|gb|EEK58993.1| transcriptional regulator, XRE [Bacillus cereus 172560W]
          Length = 108

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+      ++S I   E  +   + + +I +A         
Sbjct: 2  KTFGNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12]
 gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071]
 gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679]
 gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330]
 gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12]
 gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071]
 gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679]
          Length = 123

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RK+   TQ E+  +   +Q  I   E G++  N + +  LAH  +     L
Sbjct: 1  MLKDRIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAEPNSEALTKLAHLFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|224583844|ref|YP_002637642.1| hypothetical protein SPC_2069 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|224468371|gb|ACN46201.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|213616057|ref|ZP_03371883.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-2068]
          Length = 156

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|207856821|ref|YP_002243472.1| hypothetical protein SEN1367 [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|206708624|emb|CAR32946.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Enteritidis str. P125109]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|125624656|ref|YP_001033139.1| HTH-type transcriptional regulator [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|124493464|emb|CAL98438.1| HTH-type transcriptional regulator [Lactococcus lactis subsp.
          cremoris MG1363]
 gi|300071447|gb|ADJ60847.1| HTH-type transcriptional regulator [Lactococcus lactis subsp.
          cremoris NZ9000]
          Length = 85

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N RN R    LTQ ++  +  F++  +   E GK   NI+ +  LA   +  + KL++
Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVDKLIR 85


>gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 68

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +R E   TQ ++  RTG ++  +  +E  K T +++    +A      +  +
Sbjct: 1  MIQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYTPSLELAFKIAQVFGVEITTV 60

Query: 81 LKP 83
            P
Sbjct: 61 FSP 63


>gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus
          ND03]
          Length = 229

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   ++Q  +    G ++S     E GK+  N  N+ +LA     
Sbjct: 4  GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56


>gi|291531440|emb|CBK97025.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 108

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD-TPLWKL 80
                  RKE  L Q E+         ++S +ETG+S  +++ ++ L   L+ TP + L
Sbjct: 8  LGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNATPDYFL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|240851111|ref|YP_002972513.1| transcriptional regulator [Bartonella grahamii as4aup]
 gi|240268234|gb|ACS51822.1| transcriptional regulator [Bartonella grahamii as4aup]
          Length = 123

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     R+ R   +L+QK + +  G +   I + E G + +++  ++ +A  L+ P+
Sbjct: 12 LIGKRIRHRRISIELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQKLEVPM 68


>gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126]
 gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126]
          Length = 229

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   ++Q  +    G ++S     E GK+  N  N+ +LA     
Sbjct: 4  GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56


>gi|225027560|ref|ZP_03716752.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353]
 gi|224955076|gb|EEG36285.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353]
          Length = 180

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E +         RK+  LTQKE+  + G     +S+ E G+S  ++  +  L   L+ 
Sbjct: 14 MVEPIKVGRFIAQNRKDLNLTQKELAEKLGVTDRAVSKWENGRSIPDVGIIESLCKELNI 73

Query: 76 PLWKLL 81
           + +  
Sbjct: 74 SIGEFF 79


>gi|149919009|ref|ZP_01907494.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149820162|gb|EDM79581.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 125

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
               E   F  + R +R E  LTQ+ +  R+G +   +  LE GK + +   +  L   
Sbjct: 5  QRSDPEARRFGRHIRALRSERGLTQELLAERSGLSADSVRSLENGKFSPSRGTLRKLCTG 64

Query: 73 LDTPL 77
          LD  +
Sbjct: 65 LDLQM 69


>gi|149020301|ref|ZP_01835193.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP23-BS72]
 gi|147930603|gb|EDK81585.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP23-BS72]
          Length = 198

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+E KL+QKEI    GF+      +E G+S I  +   +LA      +  LL
Sbjct: 2  NRLKELRQEKKLSQKEIAETLGFSLRSFQRMENGESQIKPEKAQLLADYFGVSVANLL 59


>gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus
          LMD-9]
 gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9]
          Length = 229

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   ++Q  +    G ++S     E GK+  N  N+ +LA     
Sbjct: 4  GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56


>gi|152985545|ref|YP_001349953.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
 gi|150960703|gb|ABR82728.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7]
          Length = 237

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
            +  RK A L+Q ++    G  Q+ IS+LE GKS      +  +A      PLW
Sbjct: 6  RIKAARKHANLSQVQLAQAVGMTQTSISDLERGKSRAT-SFVAQIAGACGVNPLW 59


>gi|62180230|ref|YP_216647.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|62127863|gb|AAX65566.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. SC-B67]
 gi|322714702|gb|EFZ06273.1| putative transcriptional regulator [Salmonella enterica subsp.
          enterica serovar Choleraesuis str. A50]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311]
 gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066]
          Length = 229

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR+   ++Q  +    G ++S     E GK+  N  N+ +LA     
Sbjct: 4  GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGV 56


>gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449]
 gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449]
          Length = 228

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +    +R E ++TQK+   RTG +   +   E G  +   D +  ++   + P+
Sbjct: 1  MIGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPM 57


>gi|323359589|ref|YP_004225985.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275960|dbj|BAJ76105.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 107

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN------IDNMIILAHTLDT 75
          F  N R  R +A LTQ+++      +     +LE G+S         +  ++ L+  L  
Sbjct: 33 FGANLRRARLDAGLTQEDVAVSARISLFTYQKLEKGESNPGTPANPRLQTLLALSAVLGV 92

Query: 76 PLWKLL 81
           +  L+
Sbjct: 93 SIEDLV 98


>gi|297626497|ref|YP_003688260.1| XRE family transcriptional regulator [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922262|emb|CBL56834.1| Helix-turn-helix XRE-family like proteins [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 97

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R++     R  R   + T +++      +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 3  RVLLGQTLREQRIHDRRTLRDVSLAARVSLGYLSEVERGQKEASSELLFSICQALNVPLS 62

Query: 79 KLLK 82
          ++L+
Sbjct: 63 EILR 66


>gi|229823422|ref|ZP_04449491.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC
          51271]
 gi|229787197|gb|EEP23311.1| hypothetical protein GCWU000282_00720 [Catonella morbi ATCC
          51271]
          Length = 71

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+  KL+Q  +    G A+  I+ +E  K   ++D  + LA+ L+T L  L 
Sbjct: 2  NRVRELRQSRKLSQLALAKEVGVARQTINLIENDKYNPSLDLCLKLAYALETDLNTLF 59


>gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 65

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R E   +Q ++  R G ++  I+ +ETG+   ++     +A   + P+  + +
Sbjct: 5  MRQLRSELGWSQADLAERLGVSRQTINAIETGRYDPSLPLAFKIAKVFERPIEGIFE 61


>gi|227874912|ref|ZP_03993064.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35243]
 gi|306818236|ref|ZP_07451966.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
 gi|227844489|gb|EEJ54646.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35243]
 gi|304648975|gb|EFM46270.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC
          35239]
          Length = 114

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          H        R       R++R+   +T +++  R   +  ++SE+E G+   + + +  +
Sbjct: 9  HKPSDPPVLRRELGEVLRDLRQSRSMTLRDVSARARVSLGYLSEIERGQKEASSELLAAI 68

Query: 70 AHTLDTPLWKLLK 82
           + LD P+  +L+
Sbjct: 69 CYALDAPVSFVLR 81


>gi|227832157|ref|YP_002833864.1| hypothetical protein cauri_0327 [Corynebacterium aurimucosum ATCC
          700975]
 gi|262183991|ref|ZP_06043412.1| hypothetical protein CaurA7_08368 [Corynebacterium aurimucosum
          ATCC 700975]
 gi|227453173|gb|ACP31926.1| hypothetical protein cauri_0327 [Corynebacterium aurimucosum ATCC
          700975]
          Length = 85

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PR K+ +P   +  L         F   R+E  + Q+ +  + G ++S +  +E G S +
Sbjct: 7  PRHKQGKPAGDNPQLIA---LGEGFAQRRRELGILQQALAEKAGISRSTLHTIEHGGSGV 63

Query: 62 NIDNMIILAHTLDTPL 77
            + +I +A  LD  +
Sbjct: 64 RWEKVIAVAEALDLEM 79


>gi|254510869|ref|ZP_05122936.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221534580|gb|EEE37568.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 179

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +R  + L+   +   TG +++ + ++E G+S+  I  +  +A     PL  L+
Sbjct: 1  MRAASGLSLSRVAEMTGVSKAMLGQIERGESSPTIATLWKIAKGFQLPLSALI 53


>gi|168185962|ref|ZP_02620597.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
 gi|169295926|gb|EDS78059.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
          Length = 107

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +  +N +  RKE  ++  ++    G + S++S+LE  KS   +++ +  LA  L+  +  
Sbjct: 1  MLGDNIKAFRKEKGMSLNKLAKSAGMSPSYLSDLENNKSVNPSMEKLNKLAEILEVRIED 60

Query: 80 LLK 82
            K
Sbjct: 61 FYK 63


>gi|58617626|ref|YP_196825.1| putative transcriptional regulator [Ehrlichia ruminantium str.
           Gardel]
 gi|58417238|emb|CAI28351.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str.
           Gardel]
          Length = 201

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           M  +K   P  S     +        +  R    ++Q ++ N+ G     + + E G + 
Sbjct: 45  MSGQKSATPK-SRPHPVD-ECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNR 102

Query: 61  INIDNMIILAHTLDTPLWKLL 81
           I I  +  LA  L+  +  ++
Sbjct: 103 IVISRLYQLASVLNVEVRDIM 123


>gi|325290759|ref|YP_004266940.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324966160|gb|ADY56939.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 105

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RKE  +TQ E+    G  Q+ I+ +E  K+   +  +  +   L   L  +  P
Sbjct: 38 ARKEKGMTQAELDALCGINQTHIARIENNKADPQLSTIFKILRPLGKTLAVVDVP 92


>gi|311069889|ref|YP_003974812.1| putative transcriptional repressor [Bacillus atrophaeus 1942]
 gi|310870406|gb|ADP33881.1| putative transcriptional repressor [Bacillus atrophaeus 1942]
          Length = 139

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +RK   LT  ++   +G + + IS +E GK        +  LA TL  P   L
Sbjct: 4  FGEQLRALRKARHLTVNQLAIYSGVSSATISRIENGKRGIPKPATIRKLADTLKMPYENL 63

Query: 81 L 81
          +
Sbjct: 64 M 64


>gi|296394527|ref|YP_003659411.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296181674|gb|ADG98580.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 112

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 2  PRRKRDEPHLSDAILRER-----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET 56
          PR +   P L  A+  E                R+   + Q E     G  +S +S++E 
Sbjct: 6  PREEGAAPDLGYAVPMEHAALFNKHVGAEIALWRRVLDMGQDEFAAMVGIERSRLSKIEN 65

Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83
          GK    +D  + +A  +DT +  LL+P
Sbjct: 66 GKLAARMDEFLAVAALVDTNVVDLLQP 92


>gi|228931409|ref|ZP_04094334.1| hypothetical protein bthur0010_60490 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228828215|gb|EEM73925.1| hypothetical protein bthur0010_60490 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
          Length = 190

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 27/46 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          N    +RKE  ++Q+++  + G ++++ISE+E  K   N+   I +
Sbjct: 2  NRIAELRKEKLISQEKLAEQVGLSRTYISEIENNKKQPNVKLAIKI 47


>gi|218133316|ref|ZP_03462120.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC
          43243]
 gi|217992189|gb|EEC58193.1| hypothetical protein BACPEC_01181 [Bacteroides pectinophilus ATCC
          43243]
          Length = 217

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N R  R E K++Q  +   TG+  +S I+++E G+  I+   +   A  L     +L+
Sbjct: 12 KNIRERRIELKMSQDTLAELTGYRDRSSIAKIEKGEVDISESKIREFAKALKVSPGELM 70


>gi|295840749|ref|ZP_06827681.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197696319|gb|EDY43252.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 75

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P   DA+   R    +  R+ R    L+Q+++  RTG +   +  +E+G     +  +  
Sbjct: 2  PPEPDALDAFRRQLADRIRDHRLWRNLSQEQVAERTGLSAHTVQRIESGTRETKVSYLFR 61

Query: 69 LAHTLDTPLWKLL 81
          L H LD  +  LL
Sbjct: 62 LTHALDCEVRDLL 74


>gi|38637847|ref|NP_942821.1| putative regulatory protein [Ralstonia eutropha H16]
 gi|32527185|gb|AAP85935.1| putative regulatory protein [Ralstonia eutropha H16]
          Length = 167

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  N  +  R    LTQ+++ +  G ++  ++ +E G     + ++  L   L   L
Sbjct: 5  LLGNAIQRKRVALGLTQQQLADMAGLSRQSLNGIEHGSVNATLQSLGRLMDVLGLAL 61


>gi|56413411|ref|YP_150486.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Paratyphi A str. ATCC 9150]
 gi|197362334|ref|YP_002141971.1| hypothetical protein SSPA1132 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|56127668|gb|AAV77174.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093811|emb|CAR59293.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|86136992|ref|ZP_01055570.1| DNA-binding protein, putative [Roseobacter sp. MED193]
 gi|85826316|gb|EAQ46513.1| DNA-binding protein, putative [Roseobacter sp. MED193]
          Length = 204

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  +     R+ RKE  LT +E        +S +S++E  ++  + + +  L  TL+  
Sbjct: 19 PDGEVLGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELE 78

Query: 77 LWKLL 81
            +L 
Sbjct: 79 TPQLF 83


>gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family)
          protein [Bacillus atrophaeus 1942]
 gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family)
          protein [Bacillus atrophaeus 1942]
          Length = 127

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  + +RK+  LTQKE+  +   +QS I+  E  +     + +  +A+  D  +  
Sbjct: 1  MSFGHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEILPTSETLSKIANYFDVSIDF 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|310829679|ref|YP_003962036.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612]
 gi|308741413|gb|ADO39073.1| prophage Lp1 protein 8 [Eubacterium limosum KIST612]
          Length = 243

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +RK  KLTQ ++  R G A + +S  E+G+   ++  M  L +  D     +L
Sbjct: 9  FPARLRELRKSHKLTQAQMAARLGIAPASLSYYESGERLPDLRVMDTLYNEFDVSFEYML 68


>gi|302387113|ref|YP_003822935.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302197741|gb|ADL05312.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 140

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLW 78
          M+F +  + +R  A ++Q+E+ NRTG +   I   E+ +    ++  +  L   L T + 
Sbjct: 1  MLFGDRIKELRNLADMSQQELANRTGLSLRSIQNYESNQRYPKDVAILNKLCAALGTTIE 60

Query: 79 KLLK 82
          +L+K
Sbjct: 61 ELMK 64


>gi|260554213|ref|ZP_05826469.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260404661|gb|EEW98175.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 101

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLW 78
          +     R  R   +++Q E+  R G   + +S LE G   ++++N++ +A  L     L 
Sbjct: 14 LLGERLRKQRLFLEMSQTEVAARAGVGVNTVSNLEAG-RNVSVENLVRIAMVLGRLNELQ 72

Query: 79 KLLKP 83
          +L KP
Sbjct: 73 ELFKP 77


>gi|253316015|ref|ZP_04839228.1| hypothetical protein SauraC_07702 [Staphylococcus aureus subsp.
          aureus str. CF-Marseille]
 gi|257426314|ref|ZP_05602723.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428649|ref|ZP_05605046.1| helix-turn-helix containing protein [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257431575|ref|ZP_05607946.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433971|ref|ZP_05610323.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257436875|ref|ZP_05612918.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876]
 gi|282915390|ref|ZP_06323166.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899]
 gi|282926055|ref|ZP_06333701.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101]
 gi|293509091|ref|ZP_06667875.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511865|ref|ZP_06670558.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
 gi|293550575|ref|ZP_06673246.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015]
 gi|257270886|gb|EEV03072.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274520|gb|EEV06026.1| helix-turn-helix containing protein [Staphylococcus aureus subsp.
          aureus 65-1322]
 gi|257277677|gb|EEV08354.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281109|gb|EEV11252.1| DNA-binding protein [Staphylococcus aureus subsp. aureus E1410]
 gi|257283786|gb|EEV13910.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M876]
 gi|270300313|gb|ACZ69119.1| hypothetical protein SAP065B_019 [Staphylococcus aureus]
 gi|281334218|gb|ADA61302.1| hypothetical protein SAP013A_027 [Staphylococcus aureus]
 gi|281334580|gb|ADA61664.1| hypothetical protein SAP026A_011 [Staphylococcus aureus]
 gi|282165943|gb|ADA79963.1| hypothetical protein SAP095A_012 [Staphylococcus aureus]
 gi|282165989|gb|ADA80009.1| hypothetical protein SAP096A_026 [Staphylococcus aureus]
 gi|282166399|gb|ADA80415.1| hypothetical protein SAP085C_016 [Staphylococcus aureus]
 gi|282166455|gb|ADA80471.1| hypothetical protein SAP088A_032 [Staphylococcus aureus]
 gi|282166595|gb|ADA80611.1| hypothetical protein SAP093C_026 [Staphylococcus aureus]
 gi|282166914|gb|ADA80930.1| hypothetical protein SAP084B_016 [Staphylococcus aureus]
 gi|282166965|gb|ADA80981.1| hypothetical protein SAP086A_019 [Staphylococcus aureus]
 gi|282167021|gb|ADA81037.1| Transcriptional regulator, XRE family [Staphylococcus aureus]
 gi|282312457|gb|EFB42862.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101]
 gi|282320717|gb|EFB51052.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M899]
 gi|290918638|gb|EFD95715.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291094657|gb|EFE24932.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465307|gb|EFF07840.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809]
          Length = 64

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +  R+    +Q+E+ N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEDIKEQRELKGWSQEELTNILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|238911950|ref|ZP_04655787.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|229148382|ref|ZP_04276660.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
 gi|228635082|gb|EEK91634.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
          Length = 79

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++ V+  +  R E  LTQ+E+       +  I  +E  K   ++   I +A +LD  L +
Sbjct: 14 LMSVSKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDE 73

Query: 80 LL 81
          L 
Sbjct: 74 LF 75


>gi|255655114|ref|ZP_05400523.1| putative transcriptional regulator [Clostridium difficile
          QCD-23m63]
 gi|296451102|ref|ZP_06892844.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296880545|ref|ZP_06904507.1| DNA-binding protein [Clostridium difficile NAP07]
 gi|296260109|gb|EFH06962.1| DNA-binding protein [Clostridium difficile NAP08]
 gi|296428499|gb|EFH14384.1| DNA-binding protein [Clostridium difficile NAP07]
          Length = 183

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R+E  ++  +    TG +++ + ++E G+S+  +  +  ++         LL
Sbjct: 8  VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLL 67


>gi|240147061|ref|ZP_04745662.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82]
 gi|257200784|gb|EEU99068.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82]
          Length = 334

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI        RK+   +Q+E+  +   ++  +S+ E+ +S  ++  +I L+  L      
Sbjct: 1  MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEILGVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|212696766|ref|ZP_03304894.1| hypothetical protein ANHYDRO_01308 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676265|gb|EEB35872.1| hypothetical protein ANHYDRO_01308 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 116

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F       RKE  +TQK+I  +   +   +S+ E GKS  +I  ++ LA  LD  L 
Sbjct: 6  KKDFGEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLV 65

Query: 79 KLLK 82
           LL+
Sbjct: 66 NLLE 69


>gi|167549848|ref|ZP_02343606.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA29]
 gi|168235794|ref|ZP_02660852.1| transcriptional regulator, Cro/CI family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|168819468|ref|ZP_02831468.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194734886|ref|YP_002114693.1| transcriptional regulator, Cro/CI family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          CVM19633]
 gi|198246100|ref|YP_002215480.1| Cro/CI family transcriptional regulator [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|205352653|ref|YP_002226454.1| hypothetical protein SG1453 [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|194710388|gb|ACF89609.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197291185|gb|EDY30538.1| transcriptional regulator, Cro/CI family protein [Salmonella
          enterica subsp. enterica serovar Schwarzengrund str.
          SL480]
 gi|197940616|gb|ACH77949.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Dublin str. CT_02021853]
 gi|205272434|emb|CAR37321.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324984|gb|EDZ12823.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Saintpaul str. SARA29]
 gi|205343756|gb|EDZ30520.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085841|emb|CBY95617.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
 gi|322614917|gb|EFY11842.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315996572]
 gi|322619357|gb|EFY16237.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623169|gb|EFY20011.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628458|gb|EFY25246.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634866|gb|EFY31597.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638569|gb|EFY35264.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640896|gb|EFY37544.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 531954]
 gi|322645375|gb|EFY41903.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          NC_MB110209-0054]
 gi|322651740|gb|EFY48112.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654360|gb|EFY50682.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str.
          CASC_09SCPH15965]
 gi|322661201|gb|EFY57427.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 19N]
 gi|322662671|gb|EFY58878.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 81038-01]
 gi|322671870|gb|EFY67991.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 414877]
 gi|322677085|gb|EFY73149.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 366867]
 gi|322680253|gb|EFY76292.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 413180]
 gi|322685318|gb|EFY81314.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 446600]
 gi|323194137|gb|EFZ79335.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199377|gb|EFZ84471.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203486|gb|EFZ88510.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 609460]
 gi|323205869|gb|EFZ90832.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 507440-20]
 gi|323217196|gb|EGA01917.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219108|gb|EGA03611.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227274|gb|EGA11444.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323232058|gb|EGA16165.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234585|gb|EGA18672.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238038|gb|EGA22097.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243361|gb|EGA27380.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Montevideo str. 315731156]
 gi|323246168|gb|EGA30153.1| hypothetical protein SEEM9199_07956 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323259102|gb|EGA42748.1| hypothetical protein SEEM8283_04720 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260430|gb|EGA44043.1| hypothetical protein SEEM8284_18305 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323266482|gb|EGA49969.1| hypothetical protein SEEM8285_00870 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323271206|gb|EGA54633.1| hypothetical protein SEEM8287_05157 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|326627719|gb|EGE34062.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Gallinarum str. 9]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|146311635|ref|YP_001176709.1| XRE family transcriptional regulator [Enterobacter sp. 638]
 gi|145318511|gb|ABP60658.1| transcriptional regulator, XRE family [Enterobacter sp. 638]
          Length = 175

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +  ++ + TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LATTLKTERQARGWSLSKLADETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 SP 68


>gi|126698714|ref|YP_001087611.1| putative transcriptional regulator [Clostridium difficile 630]
 gi|255100133|ref|ZP_05329110.1| putative transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255306023|ref|ZP_05350195.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
 gi|115250151|emb|CAJ67972.1| Transcriptional regulator, RmlC-type [Clostridium difficile]
          Length = 183

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R+E  ++  +    TG +++ + ++E G+S+  +  +  ++         LL
Sbjct: 8  VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLL 67


>gi|254974648|ref|ZP_05271120.1| putative transcriptional regulator [Clostridium difficile
          QCD-66c26]
 gi|255092038|ref|ZP_05321516.1| putative transcriptional regulator [Clostridium difficile CIP
          107932]
 gi|255313774|ref|ZP_05355357.1| putative transcriptional regulator [Clostridium difficile
          QCD-76w55]
 gi|255516456|ref|ZP_05384132.1| putative transcriptional regulator [Clostridium difficile
          QCD-97b34]
 gi|255649554|ref|ZP_05396456.1| putative transcriptional regulator [Clostridium difficile
          QCD-37x79]
 gi|260682721|ref|YP_003214006.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260686319|ref|YP_003217452.1| putative transcriptional regulator [Clostridium difficile R20291]
 gi|306519681|ref|ZP_07406028.1| putative transcriptional regulator [Clostridium difficile
          QCD-32g58]
 gi|260208884|emb|CBA61852.1| putative transcriptional regulator [Clostridium difficile CD196]
 gi|260212335|emb|CBE03128.1| putative transcriptional regulator [Clostridium difficile R20291]
          Length = 183

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R +R+E  ++  +    TG +++ + ++E G+S+  +  +  ++         LL
Sbjct: 8  VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKISSGFKINFTTLL 67


>gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705]
 gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium
          longum NCC2705]
 gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
          Length = 298

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F  N + +R +  + Q+++    G ++  IS+ E+ K+   +D ++++       L  
Sbjct: 1  MSFRANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDD 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|16760223|ref|NP_455840.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. CT18]
 gi|29142008|ref|NP_805350.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. Ty2]
 gi|213161903|ref|ZP_03347613.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E00-7866]
 gi|213426582|ref|ZP_03359332.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E02-1180]
 gi|213586064|ref|ZP_03367890.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. E98-0664]
 gi|213645936|ref|ZP_03375989.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. J185]
 gi|213864716|ref|ZP_03386835.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. M223]
 gi|25513334|pir||AI0661 conserved hypothetical DNA-binding protein STY1400 [imported] -
          Salmonella enterica subsp. enterica serovar Typhi
          (strain CT18)
 gi|16502518|emb|CAD01666.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Typhi]
 gi|29137637|gb|AAO69199.1| conserved hypothetical DNA-binding protein [Salmonella enterica
          subsp. enterica serovar Typhi str. Ty2]
          Length = 200

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|302347097|ref|YP_003815395.1| helix-turn-helix protein [Prevotella melaninogenica ATCC 25845]
 gi|302151032|gb|ADK97293.1| helix-turn-helix protein [Prevotella melaninogenica ATCC 25845]
          Length = 135

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RM+      N  K+  ++QKE   +   ++S +S   +G     ID +  ++  LD  L 
Sbjct: 26 RMMIAAKIGNALKDKGISQKEFAKKLKKSESEVSSWLSGDRNFTIDTLTEISLALDISLL 85

Query: 79 K 79
           
Sbjct: 86 D 86


>gi|218690034|ref|YP_002398246.1| putative transcriptional regulator [Escherichia coli ED1a]
 gi|218427598|emb|CAR08499.2| Putative transcriptional regulator [Escherichia coli ED1a]
          Length = 115

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLD 74
          R IF    +  R  A L+QK++    G     A + I+  E G    +I     LA TL+
Sbjct: 14 REIFCKRLKEARTAAGLSQKKLGIAAGIDEFVASTRINRYEKGVHEADIHTAQKLAETLN 73

Query: 75 TPL 77
           PL
Sbjct: 74 VPL 76


>gi|206559412|ref|YP_002230173.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|206561186|ref|YP_002231951.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198035450|emb|CAR51327.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
 gi|198037228|emb|CAR53149.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
          Length = 206

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D  + ER+      R +R     T   +  R+G ++S IS +E   ++     +  LA 
Sbjct: 10 DDTGINERI--ARRVRGLRAVRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAA 67

Query: 72 TLDTPLWKLL 81
           L   L  L 
Sbjct: 68 GLGVSLAGLF 77


>gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1]
          Length = 290

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 37/61 (60%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R    +++K++ +  G ++ ++++LE G++ ++++ + +LA  +DT +  L+
Sbjct: 14 LGDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTAITDLI 73

Query: 82 K 82
          +
Sbjct: 74 E 74


>gi|323481312|gb|ADX80751.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 306

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           N  +++RKE KLTQK++   TG +QS + + E G   I+ +  I L+  L+ 
Sbjct: 10 GNILKSLRKEQKLTQKKLSELTGISQSALVKYENGTRGISKNVDIALSKALNV 62


>gi|307244718|ref|ZP_07526820.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
          DSM 17678]
 gi|306491895|gb|EFM63946.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
          DSM 17678]
          Length = 71

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R +  + Q+E+      ++  IS +E G    +I   + LA   D  +  + 
Sbjct: 5  NKLKEYRAQKGINQQELGKLVDVSRQTISLIERGDYNPSITLCLKLAKLFDVNVEDIF 62


>gi|312141149|ref|YP_004008485.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325674029|ref|ZP_08153719.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC
          33707]
 gi|311890488|emb|CBH49806.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325555294|gb|EGD24966.1| PbsX family transcriptional regulator [Rhodococcus equi ATCC
          33707]
          Length = 155

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M     D    +  +        +  R+ R+ A+++ +++    G +  ++S++E G   
Sbjct: 1  MVDEPDDMSSAARVVAGAAQDIGSFIRSQREAAQVSLRQLAQLAGVSNPYLSQIERGLRK 60

Query: 61 INIDNMIILAHTLDTPLWKL 80
           + D +  +A  L      L
Sbjct: 61 PSADVLAQIAKGLRVSSEVL 80


>gi|289168188|ref|YP_003446457.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288907755|emb|CBJ22592.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 287

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I    FR  RKE  L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 3  ILSEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|288574560|ref|ZP_06392917.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288570301|gb|EFC91858.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 134

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R+   +TQ E+  +   +++++  LE  + T ++  +  L   L      L+
Sbjct: 27 GLRIKLLRESLGMTQLELAEKADISRTYVQALEGNRKTPSVKLLGKLGDILKVDPGSLI 85


>gi|317128355|ref|YP_004094637.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315473303|gb|ADU29906.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 73

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     R  RKE  ++  E+   TG ++S++S +E G K   +I+ +  + H+L+ P+  
Sbjct: 1  MIGEIIRKKRKERGISLSELSRMTGVSKSYLSYIERGMKKNPSIEVIKRIFHSLNLPITM 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC
          12478]
          Length = 471

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R +R+E  LTQ  +      + S++++LE  +  I +  ++ L      P
Sbjct: 7  GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLP 60


>gi|190570687|ref|YP_001975045.1| Putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus Pel]
 gi|190356959|emb|CAQ54347.1| Putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus Pel]
          Length = 305

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 7  RYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVDII 66

Query: 79 KLL 81
           L+
Sbjct: 67 DLI 69



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +  R     TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL+
Sbjct: 164 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 223


>gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702]
 gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702]
          Length = 380

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +  R + +LTQ+++ +  G +   +S  E G +  +I  +  +A   +  L +L+
Sbjct: 16 LGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLPTIASYFEITLDELM 75


>gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC
          25986]
 gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC
          25986]
          Length = 137

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R  RK   +TQ ++    G  +  +   E+G   +  + +  +A  L   +  
Sbjct: 1  MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNA 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-containing protein [Burkholderia
          cenocepacia MC0-3]
 gi|169815025|gb|ACA89608.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3]
          Length = 356

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
          +     RK  +LT+KE+  ++G     ++ LETGK +  +++ +  LA  L  P
Sbjct: 5  SKLAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSMETLETLAQVLGYP 58


>gi|146301187|ref|YP_001195778.1| helix-turn-helix domain-containing protein [Flavobacterium
          johnsoniae UW101]
 gi|146155605|gb|ABQ06459.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101]
          Length = 335

 Score = 46.9 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N R++  L  +E+    G  Q+ IS+ E+G      D +I L+  L+     L+
Sbjct: 5  LKNAREQKGLKTRELAQLAGIDQALISKFESGTRKPTKDQVIKLSQLLEIDYETLM 60


>gi|330888348|gb|EGH21009.1| peptidase [Pseudomonas syringae pv. mori str. 301020]
          Length = 233

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
            +  RK A+LTQ E+  R+G  Q+ +SE+E G +  +
Sbjct: 26 RLKQARKHARLTQAELAERSGIKQASVSEIERGLTRTS 63


>gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 150

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R+E  LTQ+++ ++   ++  I   E G    ++     LA  LD  + +L+
Sbjct: 6  NIKKFREEKNLTQQQLADKLYVSRQTICRWENGSRCPDLITAKKLALELDVSMDELI 62


>gi|328956459|ref|YP_004373845.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4]
 gi|328672783|gb|AEB28829.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4]
          Length = 183

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    + R  R    LTQ++I       +  +S  E  K+  NI  +  L+      + +
Sbjct: 1  MSLGQSLREARAAKDLTQEDIAKVLYVTRQTVSRWEQNKTLPNIFVLQELSSLYGLSIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 110

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R+   L+Q+++  +   ++  +++ E+ K   +I N+  +A   +  L  
Sbjct: 3  MTLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 272

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N    RK    TQ+E+  +   +   IS+ ETG+S+ +I  +  LA  L T +  L+
Sbjct: 6  QNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISLLPDLAFALGTDINSLM 63


>gi|322812212|pdb|2XJ3|A Chain A, High Resolution Structure Of The T55c Mutant Of Cylr2.
 gi|322812213|pdb|2XJ3|B Chain B, High Resolution Structure Of The T55c Mutant Of Cylr2
          Length = 66

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 34/62 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          + +NN + IR++ K++Q E+      ++  I+ +E  K   ++   + +A+ L+ PL  +
Sbjct: 1  MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDI 60

Query: 81 LK 82
           +
Sbjct: 61 FQ 62


>gi|289649967|ref|ZP_06481310.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|320321116|gb|EFW77260.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|330988517|gb|EGH86620.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 221

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  +  R  A L+Q E+  + G  Q  IS+LETGK+  +   ++ +A         L+
Sbjct: 4  LADRLKIARAHAGLSQGELALKAGIKQPVISQLETGKNAGS-SFVVSIAKACGVNAEWLV 62


>gi|189219415|ref|YP_001940056.1| Xre family transcriptional regulator fused to periplasmic
          substrate-binding domain [Methylacidiphilum infernorum
          V4]
 gi|189186273|gb|ACD83458.1| Xre family transcriptional regulator fused to periplasmic
          substrate-binding domain [Methylacidiphilum infernorum
          V4]
          Length = 386

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 19 RMIFVNN-----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          + +F+NN      R  R    L+QKE+  + G ++  I  +E G    N    + LA  L
Sbjct: 3  KKLFLNNTLSSPLRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVL 62

Query: 74 DTPLWKLL 81
          +  +  L 
Sbjct: 63 EKTVEFLF 70


>gi|218439098|ref|YP_002377427.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171826|gb|ACK70559.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7424]
          Length = 533

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 4   RKRDEPHLSDA-ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           RK+ +    +        +        RK   ++Q+E+    G +QSWI +LE G+ T  
Sbjct: 460 RKKQQRINKNPKSKISHRLSAEQILTARKRQGISQRELAQLIGKSQSWIRDLERGRFTAK 519

Query: 63  IDNMIILAHTLDTP 76
            ++ + L   L+  
Sbjct: 520 PEDQLRLQKILNLS 533


>gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262]
 gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262]
          Length = 158

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+   +Q ++ +  GF++  ++  E G    +   ++ +A   +     L
Sbjct: 1  MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|328910532|gb|AEB62128.1| yqaE hypothetical protein [Bacillus amyloliquefaciens LL3]
          Length = 126

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +RK+ KL+QK +  + G A+S IS  E  +   +   ++  A   D     LL
Sbjct: 3  FGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNEREPDYATLVKFADFFDVSTDFLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|326407841|gb|ADZ64912.1| putative transcriptional regulator [Lactococcus lactis subsp.
          lactis CV56]
          Length = 64

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R EA+++Q ++ +  G  +  I  +E+GK   ++   I +   L   L  + 
Sbjct: 1  MKMARIEAEMSQADLADEVGVTRQTIGLIESGKFNPSLRLCIDICRVLKKTLNDIF 56


>gi|318060294|ref|ZP_07979017.1| DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318077735|ref|ZP_07985067.1| DNA-binding protein [Streptomyces sp. SA3_actF]
          Length = 279

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMII 68
           +     R +F +  +  RK A LTQ+++    G++   IS +E G+       +D    
Sbjct: 10 PEPSETLR-VFGSVVKAFRKRAGLTQEQLAEALGYSVDMISSIEQGRRMPQPDFVDATER 68

Query: 69 LAHTLDT 75
              +  
Sbjct: 69 ELDAVGM 75


>gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 79

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R++R     +TQ E+  R G  +  +  +E G+ + +++    +A     PL  + 
Sbjct: 9  NSIRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFKVPLDDVF 67


>gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268]
 gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268]
          Length = 203

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + RKE  +TQ E+  + G +   +S+ ETGKS  +   M+ L   L   + +LL
Sbjct: 7  GKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKSMPDSGIMLELCGFLKINVNELL 65


>gi|154483010|ref|ZP_02025458.1| hypothetical protein EUBVEN_00708 [Eubacterium ventriosum ATCC
          27560]
 gi|149736095|gb|EDM51981.1| hypothetical protein EUBVEN_00708 [Eubacterium ventriosum ATCC
          27560]
          Length = 117

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N  +++R +  ++  E+  R   +QS + +LE G + ++ID +  L   LDT
Sbjct: 20 VGNTIKSLRIKKNVSVFELAYRAKISQSHVYQLEEGSNKMSIDLLYRLMDALDT 73


>gi|55820628|ref|YP_139070.1| transcriptional repressor [Streptococcus thermophilus LMG 18311]
 gi|55822519|ref|YP_140960.1| transcriptional repressor [Streptococcus thermophilus CNRZ1066]
 gi|55736613|gb|AAV60255.1| transcriptional repressor, putative [Streptococcus thermophilus
          LMG 18311]
 gi|55738504|gb|AAV62145.1| transcriptional repressor, putative [Streptococcus thermophilus
          CNRZ1066]
          Length = 72

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 16 LRERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          LR R     N R    + E  +TQ ++    G  +  I  +E GK   ++   I +  TL
Sbjct: 2  LRRRGHVAKNLRLKVAQAEHDMTQGDLAEAVGATRQTIGLIEAGKCNPSLALCIAICKTL 61

Query: 74 DTPLWKLL 81
          D  L +L 
Sbjct: 62 DRTLDQLF 69


>gi|16126969|ref|NP_421533.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
           CB15]
 gi|221235758|ref|YP_002518195.1| MerR family transcriptional regulator [Caulobacter crescentus
           NA1000]
 gi|13424327|gb|AAK24701.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
           CB15]
 gi|220964931|gb|ACL96287.1| transcriptional regulator, MerR family [Caulobacter crescentus
           NA1000]
          Length = 284

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 10  HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
            +   I   R +     R  R+   LTQ    +  G  + ++SELE GK T+ +  ++ +
Sbjct: 213 QVPQPIKSPRAL-GQLVRQARERMGLTQAAFADAAGVGRRFVSELENGKPTLELGKVMAV 271

Query: 70  AHTLDTPL 77
                  L
Sbjct: 272 CAAAGLDL 279


>gi|85708070|ref|ZP_01039136.1| hypothetical protein NAP1_02505 [Erythrobacter sp. NAP1]
 gi|85689604|gb|EAQ29607.1| hypothetical protein NAP1_02505 [Erythrobacter sp. NAP1]
          Length = 262

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          F N    +R++   +Q+E+  R   +Q  IS LETG+S  
Sbjct: 3  FGNILARLRRDRGWSQEELAMRADLSQRHISFLETGRSKP 42


>gi|331086080|ref|ZP_08335163.1| hypothetical protein HMPREF0987_01466 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330407003|gb|EGG86508.1| hypothetical protein HMPREF0987_01466 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 106

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +R +  ++ +++    G ++S+I+++E GK+  ++     +   L       
Sbjct: 6  LFYKRLTQLRNKQGISARDMSLSLGQSESYINKIENGKALPSMSAFFYICDFLKIHPRDF 65

Query: 81 L 81
           
Sbjct: 66 F 66


>gi|307329171|ref|ZP_07608337.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu
          4113]
 gi|306885201|gb|EFN16221.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu
          4113]
          Length = 296

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          +D   R+R  F    R +R+ A LT  E     G  Q   S +E G++ ++ + +  L  
Sbjct: 5  ADPTYRQRR-FGIEVRRLREAAGLTVGEAAQVVGMRQPHFSNVEAGRTGLSAERLQKLTE 63

Query: 72 TLD 74
           L 
Sbjct: 64 ALG 66


>gi|291547752|emb|CBL20860.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 160

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+EA L+Q+E+ NR   ++  IS  E  KS  +++++++L+      L  L+
Sbjct: 3  LGKQIKMHRQEAHLSQEELANRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDNLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|254975129|ref|ZP_05271601.1| putative phage repressor [Clostridium difficile QCD-66c26]
 gi|255314256|ref|ZP_05355839.1| putative phage repressor [Clostridium difficile QCD-76w55]
 gi|255516935|ref|ZP_05384611.1| putative phage repressor [Clostridium difficile QCD-97b34]
 gi|255650038|ref|ZP_05396940.1| putative phage repressor [Clostridium difficile QCD-37x79]
 gi|306519573|ref|ZP_07405920.1| putative phage repressor [Clostridium difficile QCD-32g58]
          Length = 113

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F   F+ +R+E KLTQ E+ ++      T F +S IS+ E  K    I+ +   A   D 
Sbjct: 4  FGERFKQLREEKKLTQDELVSKFNKVYFTSFNKSTISQYENNKRKPEINILENWADFFDV 63

Query: 76 PLWKLL 81
           +  LL
Sbjct: 64 SIDYLL 69


>gi|159898574|ref|YP_001544821.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159891613|gb|ABX04693.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 84

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++  N  R++R EA  +TQ+ + +  G  +  +  LE G+   +++    +A    TP
Sbjct: 2  AKLMIHNRIRHLRVEAHGMTQQALADHVGITRQTVIALEQGRYYPSLELAFRIALLFGTP 61

Query: 77 LWKLLK 82
          L ++ +
Sbjct: 62 LEQVFQ 67


>gi|114569052|ref|YP_755732.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339514|gb|ABI64794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 68

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R E   +Q+ + +    ++  ++ LETGK   ++     LA     P+  + 
Sbjct: 3  NQLRELRGEKGWSQQALADHLDVSRQTVNALETGKYDPSLPLAFKLARLFGEPIESIF 60


>gi|85701408|ref|YP_459993.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta]
 gi|89152506|ref|YP_512337.1| transcription regulator [Bacillus phage Fah]
 gi|76445729|gb|ABA42719.1| transcription regulator [Bacillus phage Fah]
 gi|76564034|gb|ABA46423.1| transcriptional regulator, putative [Bacillus phage Cherry]
 gi|81097471|gb|ABB55414.1| putative transcriptional regulator [Bacillus phage Gamma]
 gi|83658644|gb|ABC40428.1| helix-turn-helix Cro and cI family protein [Bacillus phage WBeta]
          Length = 118

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +R+E  LTQ ++    G     +S+ ETG    + + +   A  L  P+  LL
Sbjct: 6  FKDRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLL 65


>gi|75761940|ref|ZP_00741861.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218898416|ref|YP_002446827.1| DNA-binding protein [Bacillus cereus G9842]
 gi|74490571|gb|EAO53866.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|218540574|gb|ACK92968.1| DNA-binding protein [Bacillus cereus G9842]
          Length = 67

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++  + G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 IF 62


>gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 369

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  +TQ+++ +  G     +S+ ET ++  +I  +  LA+  D     
Sbjct: 1  MTIGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAPDISQLPALANFFDVTTDH 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|227820908|ref|YP_002824878.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
 gi|227339907|gb|ACP24125.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium
          fredii NGR234]
          Length = 469

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E  IF     R IR   +LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|254474485|ref|ZP_05087871.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. R11]
 gi|214028728|gb|EEB69563.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria
          sp. R11]
          Length = 204

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 28/56 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R  RK+  +T + + + +G +  ++S++E   +T ++  +  +A  L+  L
Sbjct: 12 VGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLAQIAAALEVGL 67


>gi|241203160|ref|YP_002974256.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240857050|gb|ACS54717.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 469

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|108758128|ref|YP_635571.1| DNA-binding protein [Myxococcus xanthus DK 1622]
 gi|108462008|gb|ABF87193.1| DNA-binding protein [Myxococcus xanthus DK 1622]
          Length = 126

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  R    LTQ ++  R G A      LE G    ++ N+  L   L+ P  +L
Sbjct: 8  MLGAASRAARVRMGLTQADVAERIGMASEVYGRLERGHMLPSVQNLRRLCMVLNVPPHEL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|26989844|ref|NP_745269.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24984749|gb|AAN68733.1|AE016505_6 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 180

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  +TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60


>gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152]
 gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 201

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R +RK+ + T  E+   TG + S +S LE+G     ++ ++ LA      L +
Sbjct: 6  EAVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDE 65

Query: 80 LL 81
          L+
Sbjct: 66 LV 67


>gi|315640950|ref|ZP_07896045.1| XRE family transcriptional regulator [Enterococcus italicus DSM
          15952]
 gi|315172537|gb|EFU16554.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX1346]
 gi|315483301|gb|EFU73802.1| XRE family transcriptional regulator [Enterococcus italicus DSM
          15952]
          Length = 88

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
            + R+EA LTQ E+  +    QS I+ +E G   ++ D +  +A  L   L 
Sbjct: 33 LYHAREEAGLTQAELAQKAHTTQSTIARIERGD-NVSFDKLDDIARALGKKLV 84


>gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 185

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 33/60 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +RK   ++Q+E+  + G ++  +S+ E+G+S  +++ +I ++         +LK
Sbjct: 4  ADRIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQSLPDLEKIITMSDYFGVTTDYILK 63


>gi|302339845|ref|YP_003805051.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM
          11293]
 gi|301637030|gb|ADK82457.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM
          11293]
          Length = 393

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +N +  R + KLTQ ++   +G +   I  +E  K     + +  ++  LD  L  L+KP
Sbjct: 31 SNIKRYRSKKKLTQHDLSELSGISLPAIKNIERKKGLPRTNTLRAISKALDCRLQDLVKP 90


>gi|296115539|ref|ZP_06834169.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
 gi|295977934|gb|EFG84682.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
          Length = 97

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 6  RDEPHLSDAILRERMIFVNN--FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R  P       R    F+        R+   LTQ  +  R G  QS++++ ETG+  I++
Sbjct: 13 RSIPAELGPWWRAAQFFIRRSLLIAARRGKGLTQATLAERLGKPQSYVAKYETGERRIDV 72

Query: 64 DNMIILAHTLDTPLWKLL 81
             + +   +      +L
Sbjct: 73 IEFLDITTAIGLDAADIL 90


>gi|229550955|ref|ZP_04439680.1| xre family transcriptional regulator [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315670|gb|EEN81643.1| xre family transcriptional regulator [Lactobacillus rhamnosus
           LMS2-1]
          Length = 290

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 27/69 (39%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                  + F    + IR    +TQ ++  +   ++  +S  E  ++  +++ +  +A  
Sbjct: 82  KPSEVVILNFSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARI 141

Query: 73  LDTPLWKLL 81
               L  L+
Sbjct: 142 FSVSLDTLI 150


>gi|217960750|ref|YP_002339314.1| DNA-binding protein [Bacillus cereus AH187]
 gi|217064586|gb|ACJ78836.1| DNA-binding protein [Bacillus cereus AH187]
          Length = 67

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F+   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFITRIKEYRAKLNMTQEDLAKNVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|149924794|ref|ZP_01913136.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149814326|gb|EDM73926.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 119

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 11 LSDAILRERMI----FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           ++     R I    F  + R++R    LTQ+ +  R+  +   I  LE G  + +++ +
Sbjct: 6  SAEPAEVVRKIDPKQFGRHLRSLRNARGLTQELLAERSDLSSDTIRRLEAGTFSPSLNTL 65

Query: 67 IILAHTLDTPLWKLL 81
            +A  L   L  L 
Sbjct: 66 AGVASGLRLRLSTLF 80


>gi|149279478|ref|ZP_01885608.1| hypothetical protein PBAL39_16801 [Pedobacter sp. BAL39]
 gi|149229771|gb|EDM35160.1| hypothetical protein PBAL39_16801 [Pedobacter sp. BAL39]
          Length = 71

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +R +  ++Q  +  R G +Q+  S++E G+  + ++ +  +A  L+  +  L
Sbjct: 5  IVNQKIKVLRNKLGISQTMMAERLGISQNAFSKIELGQIDLTLNRLYKIADVLEVDVLDL 64

Query: 81 LK 82
          ++
Sbjct: 65 VR 66


>gi|217975318|ref|YP_002360069.1| XRE family transcriptional regulator [Shewanella baltica OS223]
 gi|217500453|gb|ACK48646.1| transcriptional regulator, XRE family [Shewanella baltica OS223]
          Length = 104

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISE----LETGKSTINIDNMIILAHTLDTPL 77
             +  R +A +TQ ++  + G  Q+  S      E G+ T +I+ +  +A  L  PL
Sbjct: 9  KRLKEARTKAGITQADLGAKIGIHQNSASSRMNHYELGRHTPDINTLQRIADELGVPL 66


>gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 118

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +RK + ++Q  +  + G     +   E G     ++ +I ++   D    
Sbjct: 5  RSFVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 64

Query: 79 KLL 81
          +LL
Sbjct: 65 ELL 67


>gi|167036464|ref|YP_001664042.1| XRE family transcriptional regulator [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320114890|ref|YP_004185049.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166855298|gb|ABY93706.1| transcriptional regulator, XRE family [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319927981|gb|ADV78666.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 69

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R + KLTQKE+    G    +IS++E G     ++  I +A+  +T + ++ 
Sbjct: 2  NKLKELRIKYKLTQKELAKNLGVTPDYISQIERG-RIPGMETAIKIANFFNTTVDEIF 58


>gi|309779758|ref|ZP_07674514.1| DNA-binding protein [Ralstonia sp. 5_7_47FAA]
 gi|308921457|gb|EFP67098.1| DNA-binding protein [Ralstonia sp. 5_7_47FAA]
          Length = 72

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          EA LTQ ++  + G  QS++S++E G+  +++   +       TP  +++K
Sbjct: 20 EAGLTQVQLAEKLGKGQSYVSKVERGEQYLDVLEFVEWCEACSTPSEQVIK 70


>gi|307705208|ref|ZP_07642078.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|307621230|gb|EFO00297.1| helix-turn-helix family protein [Streptococcus mitis SK597]
          Length = 73

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQK+I     F  S  +++E G+  +  D ++ L++  D     LL
Sbjct: 3  RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHALTEDVLVTLSNFYDVSTDYLL 60


>gi|302523760|ref|ZP_07276102.1| predicted protein [Streptomyces sp. AA4]
 gi|302432655|gb|EFL04471.1| predicted protein [Streptomyces sp. AA4]
          Length = 334

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 33/71 (46%)

Query: 5   KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
             ++  ++  +   R    N  R+ R  AK+TQ+++    G  Q  ++++E+G   + + 
Sbjct: 45  PGEQGEMASTVTSRRKQLGNELRHARNAAKMTQQQVAEVLGCTQGKVNKIESGAVGVKLG 104

Query: 65  NMIILAHTLDT 75
           ++  + +    
Sbjct: 105 DVRTMLNAFGI 115


>gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
          Length = 122

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ +     R++R+   ++Q+E+    G ++  IS  E G+    +  +  +A+     
Sbjct: 2  EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVS 60


>gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 122

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK    +Q ++    G  +   S  ETGK       ++ +A    T    LL
Sbjct: 12 FSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLL 71


>gi|269126360|ref|YP_003299730.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268311318|gb|ACY97692.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 284

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
               R+R +     R +R+ A L   E+    G++ + +S LETG++TI    +  L  
Sbjct: 3  DSPTARKRQL-GIQLRKLREAAGLRNAELAELMGWSTTKMSRLETGQTTITAAEVEQLCD 61

Query: 72 TLDTPLWKL 80
           L      L
Sbjct: 62 HLGVEDVDL 70


>gi|256544578|ref|ZP_05471950.1| Xre family toxin-antitoxin system, antitoxin component
          [Anaerococcus vaginalis ATCC 51170]
 gi|256399467|gb|EEU13072.1| Xre family toxin-antitoxin system, antitoxin component
          [Anaerococcus vaginalis ATCC 51170]
          Length = 132

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI-ILAHTLDTPLW 78
          M F +  R +R+   LTQ+E+    G +   IS  E G+S      +   LA  LDT   
Sbjct: 1  MSFESKLRKLRENKNLTQEELAKLVGVSLKTISRYEMGESKPRYRKIYDKLAEVLDTSHD 60

Query: 79 KLLK 82
           L+ 
Sbjct: 61 YLVT 64


>gi|229131388|ref|ZP_04260287.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196]
 gi|229165389|ref|ZP_04293175.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621]
 gi|228618093|gb|EEK75132.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621]
 gi|228652079|gb|EEL08017.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196]
          Length = 83

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R    ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 14 QVRRNGVKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGT 73

Query: 76 PLWKLL 81
           + KL 
Sbjct: 74 TVDKLF 79


>gi|262198866|ref|YP_003270075.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262082213|gb|ACY18182.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 139

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK   L Q+++ +  G +  + S +E G +  ++D  I +   L      
Sbjct: 7  KSMGRAAREARKALGLIQEQVADLLGVSPEFYSRIERGVAHPSLDTFIGMVEVLKVDADV 66

Query: 80 LL 81
          L+
Sbjct: 67 LI 68


>gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016]
 gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 375

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 25 NFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N R      RKE  +TQ+++ +  G +++ +S+ E+G S  +I  +  LA   +  + +L
Sbjct: 8  NIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDEL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus
          flavithermus WK1]
 gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus
          flavithermus WK1]
          Length = 115

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +R + KL Q+++  + G  ++  +  E GK   + + ++ +A+     +  LL
Sbjct: 11 FGDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQGKREPDYETLLKIANFFGVSVDYLL 70

Query: 82 K 82
           
Sbjct: 71 T 71


>gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC
          25827]
 gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC
          25827]
          Length = 132

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I       IRK   +T K++  +   +Q  IS  E G   I++D +I L + LD P+ +
Sbjct: 31 LIIGRQIYFIRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPIDQ 90

Query: 80 LL 81
            
Sbjct: 91 FF 92


>gi|197250724|ref|YP_002146366.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|200389331|ref|ZP_03215942.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
 gi|197214427|gb|ACH51824.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Agona str. SL483]
 gi|199601776|gb|EDZ00322.1| transcriptional regulator, Cro/CI family [Salmonella enterica
          subsp. enterica serovar Virchow str. SL491]
          Length = 200

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  ++
Sbjct: 22 VSQRIKQFRSQKKISLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADVV 81


>gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521]
 gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E
          BL5262]
 gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521]
 gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E
          BL5262]
          Length = 198

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPL 77
          R I     +  R+E  L+ +++  RTGF  S +   ETG    I ID    LA  L+   
Sbjct: 8  REIVAR-IKKRREELNLSYEDLSKRTGFGSSTLQRYETGAINRIPIDRFEELAKGLEIEP 66

Query: 78 WKLL 81
          +KL+
Sbjct: 67 YKLM 70


>gi|153940900|ref|YP_001392913.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152936796|gb|ABS42294.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320889|gb|ADG01267.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 220

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +  LTQK++  + G A+++I+E+E+G+  IN   M  ++  L  
Sbjct: 7  KIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57


>gi|153955107|ref|YP_001395872.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347965|gb|EDK34501.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 372

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 25 NFRNI----RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N R      RKE  +TQ+++ +  G +++ +S+ E+G S  +I  +  LA   +  + +L
Sbjct: 5  NIRRCIIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDEL 64

Query: 81 L 81
          L
Sbjct: 65 L 65


>gi|88657852|ref|YP_507902.1| putative transcriptional regulator [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599309|gb|ABD44778.1| putative transcriptional regulator [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 213

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 6   RDEPHLSDAILRE--RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +D  + +  I             +  R    ++Q ++ N+ G     + + E G + I I
Sbjct: 61  KDLKNSTTKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVI 120

Query: 64  DNMIILAHTLDTPLWKLL 81
             +  LA  L+  +  ++
Sbjct: 121 SRLYQLASVLNVEVRDIM 138


>gi|68171793|ref|ZP_00545135.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa]
 gi|13511828|gb|AAC02808.2| hypothetical transcriptional regulator [Ehrlichia chaffeensis]
 gi|67998784|gb|EAM85494.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa]
          Length = 213

 Score = 46.9 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 6   RDEPHLSDAILRE--RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           +D  + +  I             +  R    ++Q ++ N+ G     + + E G + I I
Sbjct: 61  KDLKNSTTKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVI 120

Query: 64  DNMIILAHTLDTPLWKLL 81
             +  LA  L+  +  ++
Sbjct: 121 SRLYQLASVLNVEVRDIM 138


>gi|325660971|ref|ZP_08149598.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325472478|gb|EGC75689.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 181

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R+E  LTQ+++ ++   ++  +   E G    ++     LA  LD  + +L+
Sbjct: 37 NIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDELI 93


>gi|307707493|ref|ZP_07643975.1| transcriptional activator [Streptococcus mitis NCTC 12261]
 gi|307616445|gb|EFN95636.1| transcriptional activator [Streptococcus mitis NCTC 12261]
          Length = 287

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE  L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRVKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|307327218|ref|ZP_07606406.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306887109|gb|EFN18107.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 200

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           E    D  L ER+I     R  R+ A  +   +  R G +++ +S++E  ++  ++  +
Sbjct: 3  AEAGDDDKAL-ERII-AVRAREYRQAAGASVGGMAQRVGISKAMLSKIENAQTACSLTTL 60

Query: 67 IILAHTLDTPLWKLLK 82
            LA  L  P+  L +
Sbjct: 61 SRLARGLGVPVTALFR 76


>gi|307332662|ref|ZP_07611696.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306881694|gb|EFN12846.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 398

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R+E  LTQ+ +  R   ++S +S++E G+   +   +   A  L      LL
Sbjct: 10 GARIARTRRERDLTQQGLAMRANVSKSLLSKVECGQRPASPSLIAACARALSVTTSDLL 68


>gi|257484266|ref|ZP_05638307.1| hypothetical protein PsyrptA_13492 [Pseudomonas syringae pv.
          tabaci ATCC 11528]
 gi|331008336|gb|EGH88392.1| hypothetical protein PSYTB_01194 [Pseudomonas syringae pv. tabaci
          ATCC 11528]
          Length = 133

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  +       + IRK   L+Q ++   +  +++++S+LE G+S+  ++ M  L+  L  
Sbjct: 1  MPIKNAIAAALKAIRKARGLSQYKLAEVS--SRTYVSKLERGQSSPTLEMMSTLSSPLGL 58

Query: 76 PL 77
            
Sbjct: 59 SP 60


>gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 68

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R  R++   TQ ++  R G ++  I+ +E G+   ++     LA   +T +  L  P
Sbjct: 3  NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYDPSLPLAFKLARVFETTIEDLFFP 62


>gi|166030550|ref|ZP_02233379.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC
          27755]
 gi|166029712|gb|EDR48469.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC
          27755]
          Length = 114

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
            L+     + M    N +  R     TQ+EI +  G A+S  +  E+ K   +I  +  
Sbjct: 16 HKLTKEKTGDSMQVGLNIKIKRIGRGYTQEEIADAIGVARSTYTRYESDKRLPDIYKLCA 75

Query: 69 LAHTLDTPLWKLL 81
          LA   D  L  L+
Sbjct: 76 LADYFDVSLDDLV 88


>gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS]
 gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS]
          Length = 69

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R    LTQ+E+ ++ G  +  +  +E GK + +++    +A    T + ++  
Sbjct: 3  NKLKVLRAINNLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAALFKTTIEEVFT 61


>gi|126739214|ref|ZP_01754908.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126719831|gb|EBA16539.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 462

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 31/64 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R+  +LTQK+   + G +  +++++E     ++   ++ LA      
Sbjct: 3  TQKLYAGAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|148655090|ref|YP_001275295.1| helix-turn-helix domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567200|gb|ABQ89345.1| helix-turn-helix domain protein [Roseiflexus sp. RS-1]
          Length = 119

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              ER       +  R+  +LTQ E+ +R G + S+IS +E G+S+  I  +  LA   
Sbjct: 2  PSFNER--VGEVIKRKRQRDRLTQAELGSRIGVSGSYISSIENGQSSARIAEIEALATVF 59

Query: 74 DTPLWKLL 81
           T  ++LL
Sbjct: 60 RTTAFELL 67


>gi|89101060|ref|ZP_01173900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89084233|gb|EAR63394.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 71

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN   +RK+   +Q  +  R G ++  I  +E GK + ++     +A T DT +  + 
Sbjct: 3  NNLAELRKKHGFSQDRLAVRLGVSRQTIISIEKGKYSPSLPLAFQIAKTFDTTIEHIF 60


>gi|95928598|ref|ZP_01311345.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans
          DSM 684]
 gi|95135388|gb|EAT17040.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans
          DSM 684]
          Length = 82

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  RK   L+Q +     G  Q  +S++E G+S   +D +  L   LD  L
Sbjct: 15 LRAARKRKGLSQTKAGKSVGIDQPTLSKIERGESNARLDTLFRLLAALDMEL 66


>gi|332665558|ref|YP_004448346.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332334372|gb|AEE51473.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 85

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I  +N R  R    + Q  +    G  + W  +LE G+    +D ++++A   +    +
Sbjct: 8  KIVASNVRIWRGHLGIKQHVVAAELGVCRKWYGDLENGRVRFKVDQLLVIAQLFNISPGE 67

Query: 80 LLK 82
            K
Sbjct: 68 FFK 70


>gi|323706042|ref|ZP_08117612.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323534656|gb|EGB24437.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 431

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IRK  K+ QKE++++    + +IS +E+G+ST++ +    +A  L+ 
Sbjct: 7  GERLKKIRKMLKMKQKELQDK-NITRGFISMIESGRSTMSKETASAIAKKLNK 58


>gi|322806889|emb|CBZ04459.1| putative DNA-binding protein [Clostridium botulinum H04402 065]
          Length = 102

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + IR    +T  E+    G  QS IS++E  K  I I+++  LA+T    +
Sbjct: 43 KEIRINKNITTYELSELIGIPQSTISKIENSKRKIKIESLQKLANTFHVSI 93


>gi|310764970|gb|ADP09920.1| RstR1 [Erwinia sp. Ejp617]
 gi|310764977|gb|ADP09927.1| RstR1 [Erwinia sp. Ejp617]
          Length = 122

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F   F  +RK+  LTQ ++ ++ G   + +   E+G++  ++D +  +A T       
Sbjct: 13 MSFSARFLQLRKQHGLTQPQMADKVGIHLTQVRRYESGETQPSLDILKRIAVTFSVSADW 72

Query: 80 LL 81
          L+
Sbjct: 73 LI 74


>gi|291279452|ref|YP_003496287.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
 gi|290754154|dbj|BAI80531.1| transcriptional regulator [Deferribacter desulfuricans SSM1]
          Length = 193

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E M      + +R++ +LT +++   +G +  ++S++E    +  + ++  +A  L+  +
Sbjct: 11 ELMTIGKKVQELRQKKQLTLRQLSKLSGCSLGFLSQVERDLVSPTVSSLKKIADALEVNI 70

Query: 78 WKLL 81
              
Sbjct: 71 MHFF 74


>gi|288904450|ref|YP_003429671.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|306830483|ref|ZP_07463653.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325977446|ref|YP_004287162.1| hypothetical protein SGGBAA2069_c02460 [Streptococcus
          gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731175|emb|CBI12723.1| putative transcriptional regulator [Streptococcus gallolyticus
          UCN34]
 gi|304427508|gb|EFM30610.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|325177374|emb|CBZ47418.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 208

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N   +RK+  L+Q E  N    ++  +S  E GKS  +++ +I ++      +  L+K
Sbjct: 2  NINELRKKNNLSQDEFANLFHVSRQTVSSWENGKSYPDVEMLIKISQHFGISVDDLVK 59


>gi|228990754|ref|ZP_04150719.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM
          12442]
 gi|228769280|gb|EEM17878.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM
          12442]
          Length = 404

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE +LTQ ++   +   +S +S++E GK+T ++  +  LA  L+     LL
Sbjct: 4  LGEKIKALRKEKRLTQTQLAG-SELTKSMLSQIENGKATPSMKTLQYLASQLECEASFLL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|169349918|ref|ZP_02866856.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM
          1552]
 gi|169293486|gb|EDS75619.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM
          1552]
          Length = 194

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  +  R++  ++Q+E+  +   ++  IS  ET KS  ++ ++I L++  +  L   ++
Sbjct: 4  GSQIKKFREQQNISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDDFIR 63


>gi|119944087|ref|YP_941767.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii
          37]
 gi|119862691|gb|ABM02168.1| transcriptional regulator, XRE family [Psychromonas ingrahamii
          37]
          Length = 518

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
          S  ++R+        RN+RK   LT  ++  R          + S++S +E GK     D
Sbjct: 4  SKTLIRQSHFLGTKIRNLRKRNNLTLDDLSARCVKLEPECAPSVSYLSMIERGKRVPGED 63

Query: 65 NMIILAHTLDTPL 77
           + ++A      +
Sbjct: 64 MLEVIAQVFQKNM 76


>gi|146299913|ref|YP_001194504.1| XRE family plasmid maintenance system antidote protein
          [Flavobacterium johnsoniae UW101]
 gi|146154331|gb|ABQ05185.1| plasmid maintenance system antidote protein, XRE family
          [Flavobacterium johnsoniae UW101]
          Length = 136

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N   IR+   + Q+ +    G  Q  +S +E G  TI  D +  +A  L   
Sbjct: 11 GRNISRIRELRGMKQEALAFAIGVTQQTVSNIE-GSETIEDDKLDAIAEVLGVS 63


>gi|54026748|ref|YP_120990.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54018256|dbj|BAD59626.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 392

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
               R++RK   LTQ+E+ + +G + S I +LE G    + ++    LA  L  
Sbjct: 5  LGERVRSVRKRRGLTQRELADASGLSVSLIRKLEQGDRPNVRVETARKLAVALRV 59


>gi|332199304|gb|EGJ13382.1| transcriptional activator [Streptococcus pneumoniae GA41317]
          Length = 303

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|307250892|ref|ZP_07532820.1| Helix-turn-helix domain protein [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306857142|gb|EFM89270.1| Helix-turn-helix domain protein [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
          Length = 134

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R IR+  + +Q+++  +   + +  +++E G++ + +D +  +A  LD  + +L++
Sbjct: 5  EKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDVVELIQ 63


>gi|306826725|ref|ZP_07460027.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782]
 gi|304431014|gb|EFM34021.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782]
          Length = 195

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|289449795|ref|YP_003474502.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|289184342|gb|ADC90767.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
          Length = 66

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RK+ K+TQ+E+ N  G  +  I+ +ETGK   ++     +A   D  + ++ 
Sbjct: 3  NTISQLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIF 60


>gi|262197418|ref|YP_003268627.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262080765|gb|ACY16734.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 140

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R    LTQ+    R G +  + + +E G +  ++  +  +A   +     L+
Sbjct: 10 GRTMRRARTAQGLTQERAAERIGVSVEFYARIERGNAHPSVPTLYRIASAFEVSADALI 68


>gi|221201483|ref|ZP_03574522.1| repressor protein CI [Burkholderia multivorans CGD2M]
 gi|221207961|ref|ZP_03580967.1| repressor protein CI [Burkholderia multivorans CGD2]
 gi|221172146|gb|EEE04587.1| repressor protein CI [Burkholderia multivorans CGD2]
 gi|221178751|gb|EEE11159.1| repressor protein CI [Burkholderia multivorans CGD2M]
          Length = 132

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    R  RK A+LTQK++ ++ G  Q+ ISELE  +   +      +A  L  
Sbjct: 6  YGKRLRAARKGARLTQKQLADKVGLKQATISELENDEYDGSAKT-AAIADVLGV 58


>gi|77457536|ref|YP_347041.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77381539|gb|ABA73052.1| putative DNA-binding regulatory protein [Pseudomonas fluorescens
          Pf0-1]
          Length = 180

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  ++G  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF 60


>gi|330508079|ref|YP_004384507.1| hypothetical protein MCON_2169 [Methanosaeta concilii GP-6]
 gi|328928887|gb|AEB68689.1| conserved domain protein [Methanosaeta concilii GP-6]
          Length = 74

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R    LTQ+E+  + G  +  +  +E GK + ++D    +A      + ++ 
Sbjct: 3  NRVRVYRAINDLTQEELAKKIGVTRQTVLAIEKGKYSPSLDLAFKMAKIFGVKIEEIF 60


>gi|302343975|ref|YP_003808504.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301640588|gb|ADK85910.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM
           2075]
          Length = 104

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18  ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +R++   +  R +R    +T +++ +  G   S IS++E GK +++ + +  +A  L   
Sbjct: 40  DRLLAGEHPVRVLRSHRGMTLQQVADACGVTNSHISQIEKGKRSMSTELLKKMAEALRVD 99

Query: 77  LWKLL 81
              LL
Sbjct: 100 AELLL 104


>gi|260427221|ref|ZP_05781200.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260421713|gb|EEX14964.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 184

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +R E  LT  ++ + +G +++ +S LE  + +   + +  L       + +LL
Sbjct: 11 RRLAQLRAERGLTLDQLASASGVSRAALSRLEKAEVSPTAEVLGKLCTAYGLTMSRLL 68


>gi|256061267|ref|ZP_05451417.1| hypothetical protein Bneo5_12993 [Brucella neotomae 5K33]
          Length = 470

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|228909080|ref|ZP_04072909.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
 gi|228850588|gb|EEM95413.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200]
          Length = 108

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F N  R++RK+  +TQKE+ +    ++S I   E  +   + + +I +A   D     
Sbjct: 2  KTFGNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFDVSTDF 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
          Length = 142

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 1  MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM
          16047]
 gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM
          16047]
          Length = 325

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++RK+  L+Q+++      ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSIPDIEKIVNLSEFFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99]
 gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99]
 gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102]
 gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1]
 gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pondicheriensis BGSC 4BA1]
 gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 142

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 1  MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|90309028|gb|ABD93637.1| hypothetical transcriptional regulator [Ehrlichia muris]
          Length = 216

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 5   KRDEPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           K+D  +   A             +  R    ++Q ++  + G     + + E G + I I
Sbjct: 64  KKDLKNCIKARPHPVDECVGKEIKRQRIMRGMSQNQLATKLGITFQQVQKYEKGTNRIVI 123

Query: 64  DNMIILAHTLDTPLWKLL 81
             +  LA  L+  +  ++
Sbjct: 124 SRLYQLATVLNVEVRDIM 141


>gi|49081770|gb|AAT50285.1| PA0535 [synthetic construct]
          Length = 185

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +RK   +T + + +    +   +S++E G S   +D+++ ++  L  P
Sbjct: 15 VRELRKRKGITLQALADGIRRSVGLVSQVERGLSRPAVDDLVAISQVLGVP 65


>gi|83593377|ref|YP_427129.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170]
 gi|83576291|gb|ABC22842.1| Transcriptional Regulator, XRE family with Cupin sensor domain
          [Rhodospirillum rubrum ATCC 11170]
          Length = 188

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+   L+Q+E+  R G     IS +E  +S+ ++ ++  +   +   L +  
Sbjct: 5  VGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQSSPSVASLRKVLQGIPMTLAEFF 64


>gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4]
 gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4]
          Length = 479

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R +R+E  LTQ       G + S++++LE     +    ++ ++     
Sbjct: 2  GARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGV 54


>gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC
          6249]
 gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC
          6249]
          Length = 165

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +RKE   +Q+++  +   ++  IS+ E+G+    I+ +I L+         LL
Sbjct: 3  LAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDYLL 62


>gi|283785313|ref|YP_003365178.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282948767|emb|CBG88362.1| putative transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 178

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R +   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLKTLRSQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFI 67

Query: 82 KP 83
           P
Sbjct: 68 AP 69


>gi|258516791|ref|YP_003193013.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780496|gb|ACV64390.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 109

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +RK  KLT +++ + +  +Q  IS LE  + + +++ +  +   L+  L     
Sbjct: 10 GKRIKELRKTRKLTTRQLADLSDISQPVISRLENNERSADVELIKRICKALEITLQDFFT 69


>gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus
          gammatolerans EJ3]
 gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus
          gammatolerans EJ3]
          Length = 65

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+   LTQ+E+    G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGLKIEDVF 60


>gi|268592014|ref|ZP_06126235.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291312406|gb|EFE52859.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 93

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              ++ R E  LT  E+      +Q  IS  E G+S I+ID++ I    L  
Sbjct: 22 AKYLKSARIEKSLTGTELGKLLNLSQQQISRYENGQSAISIDSLHIYLKALGK 74


>gi|225375839|ref|ZP_03753060.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans
          DSM 16841]
 gi|225212274|gb|EEG94628.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans
          DSM 16841]
          Length = 142

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     + +RK    TQ  +    G  +   S  ETGK T + +    LA   +  +  
Sbjct: 4  KLLPQKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYKLAGLYNISVDD 63

Query: 80 LL 81
          LL
Sbjct: 64 LL 65


>gi|70728777|ref|YP_258526.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68343076|gb|AAY90682.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 180

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  ++G  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGVTLEALAEKSGMTKSYLSKVERGLNTPSIAAALKLAKALNVKVEELF 60


>gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          pisi str. 1704B]
          Length = 117

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +RK + ++Q  +  + G     +   E G     ++ +I ++   D    
Sbjct: 5  RSFVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 64

Query: 79 KLL 81
          +LL
Sbjct: 65 ELL 67


>gi|223932164|ref|ZP_03624168.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
 gi|223899145|gb|EEF65502.1| transcriptional regulator, XRE family [Streptococcus suis
          89/1591]
          Length = 74

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R+IR++  LTQ+ + +     +S  +++E G+ T++ + +I L++  +     LL
Sbjct: 3  RRIRDIREDHDLTQQNVSDYLSITRSAYAKIERGEHTLSAEVLIQLSNLYNVSTDYLL 60


>gi|325262061|ref|ZP_08128799.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324033515|gb|EGB94792.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 95

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R +RKE  +TQ  +       ++ +   E GK   +I  +I +A   +  L  L+
Sbjct: 8  GRNIRRLRKERNMTQLHLAKILHLHRATLCSYEIGKRLPDIFILISIADAFEVSLDILV 66


>gi|320324207|gb|EFW80287.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320328631|gb|EFW84632.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 155

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R    LTQ+ I    G  + ++S+LE GKS+  +D +  L+         L+
Sbjct: 9  LRALRAHKGLTQESIPE--GSNRQYLSQLEHGKSSPTLDKLQDLSEAYGASPLLLV 62


>gi|313498869|gb|ADR60235.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          BIRD-1]
          Length = 180

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  +TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60


>gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1]
 gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1]
 gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915]
 gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1]
 gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915]
 gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1]
          Length = 182

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 71

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R IR+   L QK +  +TG +Q  +S+ ETGK+   ID    +A  LD  +  L
Sbjct: 6  RIREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDL 61


>gi|195978222|ref|YP_002123466.1| hypothetical protein Sez_1101 [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195974927|gb|ACG62453.1| hypothetical protein Sez_1101 [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 69

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK+  +TQ+E+ N    ++  I  LE G+   +I     +A   D  + ++ 
Sbjct: 3  NRLEEIRKQKGITQEELANALEVSRQTIGSLENGRYNPSITLAFKIARFFDLTIEQIF 60


>gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
 gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
 gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna ACS-171-V-Col3]
 gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family
          [Finegoldia magna BVS033A4]
          Length = 134

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78
          M F +  + +R++  LTQ E+ ++ G     IS  ET G      D    +A   +  + 
Sbjct: 1  MSFGSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60

Query: 79 KLLK 82
           LL 
Sbjct: 61 FLLT 64


>gi|163790666|ref|ZP_02185094.1| hypothetical protein CAT7_11435 [Carnobacterium sp. AT7]
 gi|159874114|gb|EDP68190.1| hypothetical protein CAT7_11435 [Carnobacterium sp. AT7]
          Length = 91

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            ++R+E  +TQKE+  +   +Q+ I+ +E      ++  +  +A  L+  L
Sbjct: 27 LASLRREKNITQKELAEKVHVSQAQIARVENFSYAPSLKTITKIADGLNLEL 78


>gi|23502065|ref|NP_698192.1| Cro/CI family transcriptional regulator [Brucella suis 1330]
 gi|23348021|gb|AAN30107.1| transcriptional regulator, Cro/CI family [Brucella suis 1330]
          Length = 470

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|148547808|ref|YP_001267910.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148511866|gb|ABQ78726.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 180

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  +TG  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60


>gi|99081720|ref|YP_613874.1| XRE family transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038000|gb|ABF64612.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040]
          Length = 491

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R    LTQK+   + G +  +++++E     ++   ++ LA      
Sbjct: 32 TQKLYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLD 91

Query: 77 LWKL 80
          + +L
Sbjct: 92 VTEL 95


>gi|325523992|gb|EGD02186.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 205

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++R     T   +  R+G ++S IS +E   ++     +  LA  L   L  L 
Sbjct: 19 ARRVRDLRTGQGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSLAGLF 77


>gi|312960098|ref|ZP_07774610.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
 gi|311285592|gb|EFQ64161.1| transcriptional regulator, XRE family [Pseudomonas fluorescens
          WH6]
          Length = 193

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E         ++RK  KLT  ++  +   +  ++S++E G S   + ++  ++H LD 
Sbjct: 12 QEELATLAALIHDLRKHKKLTLAQLAQKIERSVGFVSQVERGLSRPTVADLTAISHALDV 71

Query: 76 P 76
          P
Sbjct: 72 P 72


>gi|331660882|ref|ZP_08361814.1| DNA-binding protein [Escherichia coli TA206]
 gi|315298933|gb|EFU58187.1| helix-turn-helix protein [Escherichia coli MS 16-3]
 gi|331051924|gb|EGI23963.1| DNA-binding protein [Escherichia coli TA206]
          Length = 74

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  + +   R  R    +TQ+E+    G  QS+I+++E G+  ++I   + L   +    
Sbjct: 8  EYQMVIKALREARVAGHITQEELGKALGRPQSFIAKVENGERRLDIVEFVHLCRLVGIDP 67

Query: 78 WKLL 81
            ++
Sbjct: 68 VSII 71


>gi|257083082|ref|ZP_05577443.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256991112|gb|EEU78414.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 257

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R     TQ++I  +       +S+ ETG+S  +IDN+++L+   +  + +L++
Sbjct: 7  LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63


>gi|256960587|ref|ZP_05564758.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384412|ref|ZP_06630293.1| putative helix-turn-helix protein [Enterococcus faecalis R712]
 gi|293389773|ref|ZP_06634215.1| putative helix-turn-helix protein [Enterococcus faecalis S613]
 gi|312906563|ref|ZP_07765564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312910745|ref|ZP_07769584.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|256951083|gb|EEU67715.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078260|gb|EFE15624.1| putative helix-turn-helix protein [Enterococcus faecalis R712]
 gi|291080931|gb|EFE17894.1| putative helix-turn-helix protein [Enterococcus faecalis S613]
 gi|310627432|gb|EFQ10715.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311289008|gb|EFQ67564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 257

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R     TQ++I  +       +S+ ETG+S  +IDN+++L+   +  + +L++
Sbjct: 7  LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63


>gi|322421967|ref|YP_004201190.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320128354|gb|ADW15914.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 305

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI--DNMIILA 70
             L    I     R IR+  KLTQ  + N  G     IS  E      +I  DN   LA
Sbjct: 10 KVPLPSVAIDGIRIRTIRETKKLTQLYVANVVGVTTDTISRWEN-NRYPSIKRDNAQKLA 68

Query: 71 HTLDTPLWKLLKP 83
            L+  L ++L+P
Sbjct: 69 DALEVTLEEILQP 81


>gi|256372684|ref|YP_003110508.1| transcriptional regulator of molybdate metabolism, XRE family
          [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009268|gb|ACU54835.1| transcriptional regulator of molybdate metabolism, XRE family
          [Acidimicrobium ferrooxidans DSM 10331]
          Length = 352

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R +R+   L+Q+++ +  G ++  ++ +E+G    ++   + LA      + +L 
Sbjct: 6  RRLRRVRGLSQQQVADALGISRQAVAGIESGAFEPSLPVAMALARFFGVSVEELF 60


>gi|221642312|ref|YP_002533399.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1]
 gi|221243247|gb|ACM15956.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1]
          Length = 66

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +  ++Q ++ N+ G  +  I  LE GK   ++     +A  L  P+  L 
Sbjct: 6  RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62


>gi|149186994|ref|ZP_01865302.1| hypothetical protein ED21_25131 [Erythrobacter sp. SD-21]
 gi|148829383|gb|EDL47826.1| hypothetical protein ED21_25131 [Erythrobacter sp. SD-21]
          Length = 190

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R+IRKE  +T  ++            +  LETG   +++  M  L   L      L+
Sbjct: 3  NRIRDIRKEKGMTLADLAEACTPPTTPQTVGRLETGMRNLSLKWMERLGAALGVEPEMLV 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|70731387|ref|YP_261128.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68345686|gb|AAY93292.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 65

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R +R     +Q E+  R   ++  ++ +ETG+   ++     +A   + P+  +  P
Sbjct: 3  NQLRELRTRQGWSQAELATRLEVSRQTVNAIETGRYDPSLPLAFKIARAFEMPIESIFSP 62


>gi|330819542|ref|YP_004348404.1| helix-turn-helix domain protein [Burkholderia gladioli BSR3]
 gi|327371537|gb|AEA62892.1| helix-turn-helix domain protein [Burkholderia gladioli BSR3]
          Length = 304

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A+L  +++  R   +++ + +LE G+  + ID +  LA      L  LL
Sbjct: 22 GERLRAYRMAAELRSEDLAERLDISRAAVYKLERGEI-VKIDTLERLATLFGVSLANLL 79


>gi|307308409|ref|ZP_07588113.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
 gi|306901012|gb|EFN31620.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          BL225C]
          Length = 470

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E  IF     R IR   +LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|282883282|ref|ZP_06291880.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B]
 gi|281296912|gb|EFA89410.1| transcriptional regulator [Peptoniphilus lacrimalis 315-B]
          Length = 67

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  NN   IRK+  +TQK+I N  G    +IS+LE G S  ++     ++  L+  + +L
Sbjct: 1  MLKNNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEISRFLECGVEEL 60


>gi|261325274|ref|ZP_05964471.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301254|gb|EEY04751.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|229060141|ref|ZP_04197511.1| Transcriptional regulator, XRE [Bacillus cereus AH603]
 gi|228719181|gb|EEL70791.1| Transcriptional regulator, XRE [Bacillus cereus AH603]
          Length = 107

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RKE KL Q+++  + G A++  +  E G    + + +I LA   +  +  L
Sbjct: 1  MFGTRLHTLRKERKLRQEDMAKQLGIARTTYAMYEQGNREPDYNTLIKLATFFEVSIDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31]
 gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31]
          Length = 69

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  +  R EA LTQ ++    G  +  I+ +E G    +    + LA  L T +  L +
Sbjct: 8  NALKAARTEAGLTQADLAELVGVTRKTINTVENGVFVPSTVLSLKLARALGTSVEALFQ 66


>gi|30021440|ref|NP_833071.1| PbsX family transcriptional regulator [Bacillus cereus ATCC
          14579]
 gi|206969324|ref|ZP_03230279.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|218232223|ref|YP_002368049.1| DNA-binding protein [Bacillus cereus B4264]
 gi|29896994|gb|AAP10272.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC
          14579]
 gi|206736365|gb|EDZ53523.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|218160180|gb|ACK60172.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 66

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTRIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 IF 62


>gi|15964466|ref|NP_384819.1| hypothetical protein SMc00769 [Sinorhizobium meliloti 1021]
 gi|15073643|emb|CAC45285.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 470

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E  IF     R IR   +LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|323704452|ref|ZP_08116031.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323536518|gb|EGB26290.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 132

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               R +  LTQK++  +    QS +S+LE+G+    I+ +  ++  L 
Sbjct: 41 KIYEFRIKNDLTQKQLAEKLEIKQSMVSKLESGQYNPTIEQLWKISKKLG 90


>gi|320176833|gb|EFW51862.1| Putrescine utilization regulator [Shigella dysenteriae CDC
          74-1112]
          Length = 185

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S I  +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAICTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|304438972|ref|ZP_07398895.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372638|gb|EFM26221.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 68

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK   +TQ+E+ N    ++  I  LE G+   +I     +A      +  + 
Sbjct: 3  NRLEEIRKSRGITQEELANILEVSRQTIGSLENGRYNPSIILAFKIAKFFKLTIEDIF 60


>gi|295108150|emb|CBL22103.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 110

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  R +R +  L+QKE+      + + IS+ ET K     D ++ L          LL
Sbjct: 3  FGNRLRKLRNQNGLSQKEVAIAISVSVNAISQYETNKRFPEPDVLVRLCKYYKISADYLL 62


>gi|288905863|ref|YP_003431085.1| transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
 gi|288732589|emb|CBI14161.1| putative transcriptional regulator, Cro/CI family [Streptococcus
          gallolyticus UCN34]
          Length = 416

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  RK+  L Q +     G +QS IS  E GK T++++    +     
Sbjct: 6  LQRFRKKTGLNQSDFAKTVGISQSLISRYELGKKTLSVETFHKIKSAFG 54


>gi|260102595|ref|ZP_05752832.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|260083622|gb|EEW67742.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
          Length = 292

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A LTQ E+      ++S+ S++E G   I+ D ++ +         +  
Sbjct: 4  GKLLRETRLVAGLTQTEMAAVA-ISESFYSKVERGVHNIDADTLVEVLKANHINPVQFF 61


>gi|238917699|ref|YP_002931216.1| hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC
          27750]
 gi|238873059|gb|ACR72769.1| Hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC
          27750]
          Length = 213

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           RN R  + +TQKE+ ++ G  +S I   E G    +   ++ +A+ L    + L  P
Sbjct: 13 IRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALSDP 70


>gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria mucosa ATCC 25996]
 gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria polysaccharea ATCC 43768]
 gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria mucosa ATCC 25996]
 gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family
          [Neisseria polysaccharea ATCC 43768]
          Length = 120

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 29/72 (40%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + ++      +     + IR +   +++++    G +++ I   E G+ + N D ++   
Sbjct: 1  MDNSFELSSKLLGERLKKIRTDNGYSREQLSELFGISRASIQNYENGERSPNADYLVQFY 60

Query: 71 HTLDTPLWKLLK 82
                L  LL 
Sbjct: 61 KHFGINLHWLLT 72


>gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme
          DSM 15981]
 gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme
          DSM 15981]
          Length = 194

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK+  LTQ+++      ++  +S+ E G    ++  +  L+  L      +L
Sbjct: 7  GKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVLGVSPETVL 65


>gi|195978988|ref|YP_002124232.1| transcriptional regulator PlcR-like [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
 gi|195975693|gb|ACG63219.1| transcriptional regulator PlcR-like [Streptococcus equi subsp.
          zooepidemicus MGCS10565]
          Length = 285

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  RKE  LTQKE+    G   Q+ IS++E G++T ++D    L   LD  +
Sbjct: 9  IKTKRKEKGLTQKELAE--GICVQAVISKIEKGETTPSVDIFFKLVKKLDIDM 59


>gi|170720494|ref|YP_001748182.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169758497|gb|ACA71813.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 229

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + +  +  RK A+LTQ E+   TG  Q+ IS+LE G+S  +  N   +A      
Sbjct: 3  YKDRIKAARKHARLTQAELAAMTGINQASISDLERGRSQRSSYN-STIARACGVS 56


>gi|148560660|ref|YP_001259108.1| hypothetical protein BOV_1147 [Brucella ovis ATCC 25840]
 gi|148371917|gb|ABQ61896.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|83717192|ref|YP_440203.1| DNA-binding protein [Burkholderia thailandensis E264]
 gi|83651017|gb|ABC35081.1| DNA-binding protein [Burkholderia thailandensis E264]
          Length = 66

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R  RKE  ++Q+ + +     +S + ++E G+  +   N+I +A  +     +L
Sbjct: 1  MLGAAIRARRKELAMSQEVLADFVEIDRSHLGKIERGERNVTFMNIIRIARVMQLLPSEL 60

Query: 81 LK 82
          L+
Sbjct: 61 LR 62


>gi|327461171|gb|EGF07504.1| hypothetical protein HMPREF9394_1037 [Streptococcus sanguinis
          SK1057]
          Length = 523

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  +  R    LTQ  +  +   ++  IS  E G   INI ++I  A  L+     L
Sbjct: 1  MIGNFLKQKRLAMGLTQDFVAKQLNISRQAISNWENGSRDINIRDLIAYAKILEISFEDL 60


>gi|317403733|gb|EFV84218.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 194

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     R +R+    T K+    TG + S +S++E G  +   DN+I +A  L+  + +L
Sbjct: 8  VLAQRLRALRQARDWTLKQAALATGVSASTLSKIENGLLSPTYDNLIKIAAGLELDVAEL 67

Query: 81 LK 82
            
Sbjct: 68 FT 69


>gi|309389332|gb|ADO77212.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM
          2228]
 gi|309389630|gb|ADO77510.1| helix-turn-helix domain protein [Halanaerobium praevalens DSM
          2228]
          Length = 92

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                R E  LTQKE+ +R G  QS IS LE      +++ +  +AH     L
Sbjct: 34 KQIIRYRIENNLTQKELADRIGTKQSAISRLENDDYNPSVEFLDKVAHAFGKKL 87


>gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
 gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
          Length = 335

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N +++R    +TQ+++    G ++  +++ E+ ++   +D ++ +    D  +  
Sbjct: 1  MSFRDNLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKICQVFDCTIDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVQ 63


>gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909]
          Length = 192

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R+   L+Q+++  +   ++  +++ E+ K   +I N+  +A   +  L  
Sbjct: 3  MTLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|208742303|ref|YP_002267755.1| transcriptional regulator [Bacillus cereus]
          Length = 66

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +  ++Q ++ N+ G  +  I  LE GK   ++     +A  L  P+  L 
Sbjct: 6  RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62


>gi|166032239|ref|ZP_02235068.1| hypothetical protein DORFOR_01942 [Dorea formicigenerans ATCC
          27755]
 gi|226325646|ref|ZP_03801164.1| hypothetical protein COPCOM_03459 [Coprococcus comes ATCC 27758]
 gi|166027962|gb|EDR46719.1| hypothetical protein DORFOR_01942 [Dorea formicigenerans ATCC
          27755]
 gi|225205770|gb|EEG88124.1| hypothetical protein COPCOM_03459 [Coprococcus comes ATCC 27758]
          Length = 106

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  R+EA +TQ+ +      + + +  +E    T  ++  + L + L     ++LK
Sbjct: 5  GKAIRRYREEAGITQERLAELVDISTNHLGAIEREVKTPTMETFVKLLNVLGAEPNEVLK 64


>gi|161526194|ref|YP_001581206.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160343623|gb|ABX16709.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
          Length = 281

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+EAK T  E+      +  ++S++E   + I+I +++ +A  L+ PL  L+
Sbjct: 9  GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 67


>gi|298207938|ref|YP_003716117.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus
          HTCC2559]
 gi|83850579|gb|EAP88447.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus
          HTCC2559]
          Length = 187

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               ++ RK+  L+Q+E+ +    +   I  +ET K+      + ++   L   +  L
Sbjct: 4  LGQKIKDARKQKGLSQEELADSAKVSLRTIQRIETNKNEPRGKTLHLICTALQLNIEDL 62


>gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces
          venezuelae ATCC 10712]
          Length = 509

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R+ R+    TQ ++ +    +QS ++ +E G   I+++ +  +   LD+ +  L
Sbjct: 10 GKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQNISLEMIARIGEALDSEIVSL 67


>gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio
          fructosovorans JJ]
 gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio
          fructosovorans JJ]
          Length = 1178

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R++R+ A LTQ  +  ++G +   ++++E G +  ++  +  L   L      L 
Sbjct: 10 FGRRLRHLRRLAGLTQAALAGQSGVSLEHLNKIERGAAAPSLAAVESLQQALGVEPASLF 69


>gi|291550735|emb|CBL26997.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 643

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F      +RK    TQ ++  + G ++S  +  E G  T + + +  ++  L   L 
Sbjct: 2  KTKFNEYLTKLRKSRVYTQAQMAEKLGISRSTYTNYENGNRTPDFEVLERISEVLACSLD 61

Query: 79 KLL 81
          +L 
Sbjct: 62 ELF 64


>gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1]
          Length = 163

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RKE   TQ+ +  + G     +S  ETG     ++ +++L+   D  + ++
Sbjct: 5  MIGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIPPVECLVMLSDIYDVSINEI 64

Query: 81 L 81
          +
Sbjct: 65 V 65


>gi|237717327|ref|ZP_04547808.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262406092|ref|ZP_06082642.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|294648160|ref|ZP_06725703.1| DNA-binding protein [Bacteroides ovatus SD CC 2a]
 gi|229443310|gb|EEO49101.1| transcriptional regulator [Bacteroides sp. D1]
 gi|262356967|gb|EEZ06057.1| transcriptional regulator [Bacteroides sp. 2_1_22]
 gi|292636544|gb|EFF55019.1| DNA-binding protein [Bacteroides ovatus SD CC 2a]
          Length = 191

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium breve DSM 20213]
 gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium breve DSM 20213]
          Length = 137

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R  RK   +TQ ++    G  +  +   E+G   +  + +  +A TL   +  
Sbjct: 1  MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNA 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|213964545|ref|ZP_03392745.1| DNA-binding protein [Corynebacterium amycolatum SK46]
 gi|213952738|gb|EEB64120.1| DNA-binding protein [Corynebacterium amycolatum SK46]
          Length = 144

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       R+IR  +  T +E+      +  ++SELE G+  ++ + +  +   L   + 
Sbjct: 63  REALGETLRDIRSRSGQTLRELSENAAISPGYLSELERGRKEVSSELLASVCAALGVTVS 122

Query: 79  KLL 81
            L+
Sbjct: 123 DLM 125


>gi|167461941|ref|ZP_02327030.1| hypothetical protein Plarl_05195 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 68

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            F   R    +TQ+E+ N+ G + ++IS LE     +       L+  L+ P+ +L 
Sbjct: 8  ETFIRARVLQGMTQRELANKCGLSYAYISLLERSVKPVGPATAKKLSEVLNRPMEELF 65


>gi|146280153|ref|YP_001170310.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558394|gb|ABP73005.1| hypothetical protein Rsph17025_4154 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 82

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P    + +R         R  R   KL+QK++   TG AQS IS++E G  + ++D  + 
Sbjct: 2  PTSPSSPIRSLRQAGAVLRARRTARKLSQKQLGEMTGTAQSTISDIENGVVSASLDVYLR 61

Query: 69 LAHTLDTPL 77
          L   L   L
Sbjct: 62 LLEALGAEL 70


>gi|148240891|ref|YP_001220392.1| transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146411267|gb|ABQ39720.1| putative transcriptional regulator (Helix-turn-helix motif)
          [Bradyrhizobium sp. BTAi1]
          Length = 108

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLW 78
          M   +  + +R + K + +++ +  G +++ I +LETGK S  +I+ +  LA   +  + 
Sbjct: 1  MALASKIKELRLKKKKSLQDVADDVGASKAHIWDLETGKSSNPSIELLTKLAKCFEVSVA 60

Query: 79 KLL 81
          +L+
Sbjct: 61 ELI 63


>gi|315163833|gb|EFU07850.1| helix-turn-helix protein [Enterococcus faecalis TX1302]
          Length = 433

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
             + +RK  +LTQ++  ++  +++S++S +ETGK TI    +  +  T 
Sbjct: 4  QEIKQLRKRLRLTQQQFADKLHWSKSYLSMIETGKRTITKTAIERINQTF 53


>gi|307324662|ref|ZP_07603868.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889544|gb|EFN20524.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 403

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTPLWKL 80
                 R+    TQ+++ +  G++QS IS LE G+ +  ++D + ++A  L      +
Sbjct: 11 GEAISAARRARGWTQQQLADICGYSQSTISRLERGRQSARDVDVLALVADRLGMDPSDV 69


>gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii
          SS-2004]
 gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii
          SS-2004]
          Length = 100

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +        RKE  +T   +  + G +Q  +S  E G + INI+++++++  L TP+
Sbjct: 7  LVGKRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPI 63


>gi|284034602|ref|YP_003384533.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283813895|gb|ADB35734.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 807

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWK 79
          F +  R++R  A LTQ+ +  R+G +   I  LE G+        +  LA  L      
Sbjct: 9  FAHLLRHLRTTAGLTQERLAERSGLSPQAIGALEGGRRQYPRPTTVAQLADALSLSPED 67


>gi|270490569|ref|ZP_06207643.1| toxin-antitoxin system, antitoxin component, Xre family [Yersinia
          pestis KIM D27]
 gi|270339073|gb|EFA49850.1| toxin-antitoxin system, antitoxin component, Xre family [Yersinia
          pestis KIM D27]
          Length = 94

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R++  LTQ+E+  R G  +  IS +E G  + N+  +   A  L 
Sbjct: 22 RQAMMTELKAARQQCNLTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 77


>gi|256854918|ref|ZP_05560282.1| predicted protein [Enterococcus faecalis T8]
 gi|307290768|ref|ZP_07570666.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|256710478|gb|EEU25522.1| predicted protein [Enterococcus faecalis T8]
 gi|306498188|gb|EFM67707.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|315028649|gb|EFT40581.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
          Length = 257

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R     TQ++I  +       +S+ ETG+S  +IDN+++L+   +  + +L++
Sbjct: 7  LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63


>gi|256617991|ref|ZP_05474837.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257091482|ref|ZP_05585843.1| predicted protein [Enterococcus faecalis CH188]
 gi|312905563|ref|ZP_07764677.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|256597518|gb|EEU16694.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257000294|gb|EEU86814.1| predicted protein [Enterococcus faecalis CH188]
 gi|310631292|gb|EFQ14575.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315576531|gb|EFU88722.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 257

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R     TQ++I  +       +S+ ETG+S  +IDN+++L+   +  + +L++
Sbjct: 7  LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQ 63


>gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 182

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RKE  LT KEI    G + +  ++ E  ++  +I+++I +A      L  L
Sbjct: 1  MIGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|238925959|ref|YP_002939477.1| hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656]
 gi|238877636|gb|ACR77343.1| Hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656]
          Length = 183

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSW-ISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    + IR   K+TQKE+  + G      I + E G      D +  +A  LD   + L
Sbjct: 3  FNLKLKKIRTFRKMTQKELSEKIGLTDQHRIVQYEKGVRVPKKDLVDKMAKALDVNPYTL 62


>gi|291298297|ref|YP_003509575.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290567517|gb|ADD40482.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 262

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R+ R +  LTQ+++  R G +   +S +ETG+S      ++ +   LD PL  
Sbjct: 14 GELIRHWRGQRHLTQQQLSIRCGVSTRHLSFIETGRSRPTASMILRVCEELDVPLRH 70


>gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
 gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii
          DSM 4541]
          Length = 233

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M       + R +A ++Q ++  + G +Q  I ++E G++  +   +  +A  ++  
Sbjct: 6  MSIAKRLLDARIKAGMSQADLAEKVGVSQQSIQKIEAGQTN-SPRRISDIAKAVNVS 61


>gi|222084212|ref|YP_002542738.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221721660|gb|ACM24816.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 121

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R +R    ++QKE+        +++S LE GK  T   D +  +A   + 
Sbjct: 4  FGEAVRKLRARKGVSQKEMAAALNVTPAYLSALEHGKRGTPTFDLLQRIAGYFNI 58


>gi|168181028|ref|ZP_02615692.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182668073|gb|EDT80052.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|322807884|emb|CBZ05459.1| putative transcription regulator, lacI/xre family [Clostridium
          botulinum H04402 065]
          Length = 220

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +  LTQK++  + G A+++I+E+E+G+  IN   M  ++  L  
Sbjct: 7  KIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57


>gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp.
          AzwK-3b]
 gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp.
          AzwK-3b]
          Length = 435

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E  +     R  R    + Q E+    G + S+++ +E  +  I    +I LA  L+ 
Sbjct: 1  MPESSMIGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLEV 60

Query: 76 PLWKL 80
              L
Sbjct: 61 EPSAL 65


>gi|148381499|ref|YP_001256040.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933346|ref|YP_001385874.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936871|ref|YP_001389281.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148290983|emb|CAL85119.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152929390|gb|ABS34890.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932785|gb|ABS38284.1| DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 220

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +  LTQK++  + G A+++I+E+E+G+  IN   M  ++  L  
Sbjct: 7  KIKEARLKKGLTQKQLAKKLGVAENFINEIESGRKIINESLMNRISKVLGK 57


>gi|91215398|ref|ZP_01252369.1| hypothetical protein P700755_09798 [Psychroflexus torquis ATCC
          700755]
 gi|91186350|gb|EAS72722.1| hypothetical protein P700755_09798 [Psychroflexus torquis ATCC
          700755]
          Length = 94

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F    +N RKE  ++Q+ +  + G  + +IS +E G+  I + N  +LA+ L   +
Sbjct: 35 FGEIIKNRRKELHMSQENLAQKVGKKRPYISRIENGE-DIRLSNFSLLANALGLSI 89


>gi|91976194|ref|YP_568853.1| transcriptional regulator [Rhodopseudomonas palustris BisB5]
 gi|91682650|gb|ABE38952.1| transcriptional regulator [Rhodopseudomonas palustris BisB5]
          Length = 273

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  R  R+   L+Q ++      +   +S +ETG++  + D ++ LA  LD PL +
Sbjct: 19 VGDYLRQWRQRRHLSQLDLAVDAEISARHLSFVETGRAAPSRDMVMRLAERLDVPLRE 76


>gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
 gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
          Length = 115

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +  +  R +R   +L+Q E+      +Q  I++ E GK+  +   +  LA   D    
Sbjct: 2  KSMIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSAD 61

Query: 79 KLL 81
           LL
Sbjct: 62 YLL 64


>gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673]
 gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673]
          Length = 250

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+   +Q+++  + G  +  +S+ ETG +T  +  +I L+   +  + +L+
Sbjct: 3  FREQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLI 62


>gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163]
 gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163]
          Length = 250

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+   +Q+++  + G  +  +S+ ETG +T  +  +I L+   +  + +L+
Sbjct: 3  FREQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLI 62


>gi|296284192|ref|ZP_06862190.1| hypothetical protein CbatJ_11236 [Citromicrobium bathyomarinum
          JL354]
          Length = 230

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D + R+        + IRK   LTQ+ + +  G +   I ++E+G+    I  +  +A  
Sbjct: 2  DTLKRDPEYIAEQVKLIRKMFSLTQENLADAAGLSSRTIEKIESGRHRPEIQTLRSIARA 61

Query: 73 LDTPLWKLLKP 83
          +   +    KP
Sbjct: 62 VQFDVNVFAKP 72


>gi|257416604|ref|ZP_05593598.1| transcriptional regulator [Enterococcus faecalis AR01/DG]
 gi|257158432|gb|EEU88392.1| transcriptional regulator [Enterococcus faecalis ARO1/DG]
 gi|315161718|gb|EFU05735.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
          Length = 433

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             + +RK  +LTQ++   +  +++S++S +ETGK TI   ++  +  T  
Sbjct: 4  QEIKILRKRLQLTQQQFAEKLDWSKSYLSMIETGKRTITKKSIEKIRKTFH 54


>gi|302875737|ref|YP_003844370.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307689168|ref|ZP_07631614.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302578594|gb|ADL52606.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 434

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      + +RKE   T K++          IS +E+GKS  ++D +  LA+TL   +
Sbjct: 2  EILSLGEKIKRLRKEKGFTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLANTLHCTV 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|300361873|ref|ZP_07058050.1| XRE family transcriptional regulator [Lactobacillus gasseri
          JV-V03]
 gi|300354492|gb|EFJ70363.1| XRE family transcriptional regulator [Lactobacillus gasseri
          JV-V03]
          Length = 129

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80
               +  R+  ++TQ+++   +  + ++IS++E  G   I+I  +  +A  L T +  L
Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDAIAKALQTSVITL 71

Query: 81 L 81
          +
Sbjct: 72 I 72


>gi|219871029|ref|YP_002475404.1| transcriptional regulator/helix-turn-helix domain-containing
          protein [Haemophilus parasuis SH0165]
 gi|219691233|gb|ACL32456.1| transcriptional regulator/helix-turn-helix domain-containing
          protein [Haemophilus parasuis SH0165]
          Length = 129

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 31/60 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R +R+    +Q+++  +   + +  + +E G++ +++D +  +A  LD  +  L+ P
Sbjct: 5  EKIRKLRETKLWSQEQMAEKMNMSLNGYARIERGETKLHLDKLEQIAQILDVDIVNLISP 64


>gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989]
 gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989]
          Length = 334

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +     RK+   TQ+++  + G ++  +S+ E+  +  ++  +I LA   +     
Sbjct: 16 MILADKIIEERKKNGWTQEDLAQKLGVSRQSVSKWESAGAIPDLKKIIQLADLFEVSTDY 75

Query: 80 LLK 82
          LLK
Sbjct: 76 LLK 78


>gi|67078283|ref|YP_245903.1| transcriptional regulator [Bacillus cereus E33L]
 gi|66970589|gb|AAY60565.1| transcriptional regulator [Bacillus cereus E33L]
          Length = 66

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    ++Q+++ N+ G  +  I  LE GK   +      +A  L  P+  L 
Sbjct: 6  RMKEYRVRLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 62


>gi|324990569|gb|EGC22505.1| transcriptional regulator [Streptococcus sanguinis SK353]
 gi|325688320|gb|EGD30339.1| transcriptional regulator [Streptococcus sanguinis SK72]
          Length = 108

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102


>gi|307318972|ref|ZP_07598403.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
 gi|306895386|gb|EFN26141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti
          AK83]
          Length = 470

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E  IF     R IR   +LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|304315772|ref|YP_003850917.1| XRE family transcriptional regulator [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302777274|gb|ADL67833.1| transcriptional regulator, XRE family [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 438

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  L Q +I     F++ +IS +E GK   ++  +  +A+ L+ PL   L
Sbjct: 6  LGKKIREERKKLFLKQGDISGD-EFSKGYISLIEKGKINPSLKALDFIANKLNKPLVYFL 64


>gi|295099748|emb|CBK88837.1| Predicted transcriptional regulators [Eubacterium cylindroides
          T2-87]
          Length = 67

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R    +TQKE+      ++  I+ +E G+    I     +   LD  L  L 
Sbjct: 7  MKAARASKDMTQKELAEAVDVSRQTINMIEKGEYNPTIKLCRAICRALDKTLDDLF 62


>gi|294676430|ref|YP_003577045.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB
          1003]
 gi|294475250|gb|ADE84638.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB
          1003]
          Length = 120

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R+ R    +TQ+++ ++ G     I + ETG + ++   +  +A  LD P
Sbjct: 9  VGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADALDVP 63


>gi|257079599|ref|ZP_05573960.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          JH1]
 gi|294780879|ref|ZP_06746233.1| DNA-binding protein [Enterococcus faecalis PC1.1]
 gi|256987629|gb|EEU74931.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          JH1]
 gi|294452005|gb|EFG20453.1| DNA-binding protein [Enterococcus faecalis PC1.1]
          Length = 433

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             + +RK  +LTQ++   +  +++S++S +ETGK TI   ++  +  T  
Sbjct: 4  QEIKILRKRLQLTQQQFAEKLDWSKSYLSMIETGKRTITKKSIEKIRKTFH 54


>gi|194335906|ref|YP_002017700.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194308383|gb|ACF43083.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 91

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 3  RRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +RK + P  +    +    F      R  RK A LTQ+++  +    +S +S +E     
Sbjct: 10 KRKDESPDFAKTFEQGYEQFRIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSED 69

Query: 61 INIDNMIILAHTLDTPL 77
          I +  +   A  L   L
Sbjct: 70 IRLSTLSHYAEALGKKL 86


>gi|190890421|ref|YP_001976963.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190695700|gb|ACE89785.1| probable transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 469

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|168186759|ref|ZP_02621394.1| xre family DNA-binding domain and TPR-repeat-containing protein
          [Clostridium botulinum C str. Eklund]
 gi|169295309|gb|EDS77442.1| xre family DNA-binding domain and TPR-repeat-containing protein
          [Clostridium botulinum C str. Eklund]
          Length = 432

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++          IS +E+GKS  ++D +  LA +L+  +
Sbjct: 2  EILSLGEKIKRRRKELGMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAESLNISI 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|152970487|ref|YP_001335596.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|238894976|ref|YP_002919710.1| putative regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|262044571|ref|ZP_06017627.1| DNA-binding protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|330003723|ref|ZP_08304741.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
 gi|150955336|gb|ABR77366.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH
          78578]
 gi|238547292|dbj|BAH63643.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae
          NTUH-K2044]
 gi|259038115|gb|EEW39330.1| DNA-binding protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|328536860|gb|EGF63164.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3]
          Length = 189

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 VP 68


>gi|94991134|ref|YP_599234.1| transcriptional regulator [Streptococcus pyogenes MGAS10270]
 gi|94544642|gb|ABF34690.1| Transcriptional regulator [Streptococcus pyogenes MGAS10270]
          Length = 195

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|5852826|gb|AAD54225.1|AF143443_4 MesF [Leuconostoc mesenteroides]
 gi|30909074|gb|AAP37399.1| MesF [Leuconostoc mesenteroides subsp. mesenteroides]
          Length = 87

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  RK A ++Q ++       Q  +S  E+G+   +ID++I ++  LD  +  +L
Sbjct: 27 GPNLKKYRKLANISQFKLGQLLNVNQVTVSHYESGQRVPDIDSLIKISDILDVDIKDIL 85


>gi|85859123|ref|YP_461325.1| transcriptional regulator helix turn helix [Syntrophus
           aciditrophicus SB]
 gi|85722214|gb|ABC77157.1| transcriptional regulator helix turn helix [Syntrophus
           aciditrophicus SB]
          Length = 117

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 24/50 (48%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R +R +  LTQK++    G  Q  ISE+E GK  I  +    L   L+ 
Sbjct: 62  LRALRAKENLTQKQLAELIGIPQRHISEMENGKRPIGKEMAKRLGKALNV 111


>gi|327468930|gb|EGF14402.1| transcriptional regulator [Streptococcus sanguinis SK330]
          Length = 108

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 44  NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 102


>gi|327462801|gb|EGF09123.1| transcriptional regulator [Streptococcus sanguinis SK1057]
          Length = 116

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 70


>gi|315640521|ref|ZP_07895629.1| DNA-binding protein [Enterococcus italicus DSM 15952]
 gi|315483725|gb|EFU74213.1| DNA-binding protein [Enterococcus italicus DSM 15952]
          Length = 209

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R +   TQ+E+ N    ++  IS  E  +S  +I +++ L+   +  L +LLK
Sbjct: 4  GEQLKRARSQIGKTQEEVANALHVSRQTISSWENKRSYPDISSLLNLSDYYNLSLDRLLK 63


>gi|313889294|ref|ZP_07822945.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
 gi|313122342|gb|EFR45430.1| DNA-binding helix-turn-helix protein [Streptococcus
          pseudoporcinus SPIN 20026]
          Length = 367

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RKE  +TQ+E+       ++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 5  GENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63


>gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 367

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RKE  +TQ+E+       ++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 5  GENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63


>gi|302549961|ref|ZP_07302303.1| transcriptional regulatory protein [Streptomyces
          viridochromogenes DSM 40736]
 gi|302467579|gb|EFL30672.1| transcriptional regulatory protein [Streptomyces
          viridochromogenes DSM 40736]
          Length = 201

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               + ++ R     T   +  R G ++  + ++E  ++  ++  ++ +   L   +  
Sbjct: 20 QSLARSVKHWRAVRGFTLDVLAARAGVSRGMLIQIEQARTNPSLGTVVKIGDALGVSITT 79

Query: 80 LL 81
          LL
Sbjct: 80 LL 81


>gi|291516023|emb|CBK65233.1| Helix-turn-helix [Alistipes shahii WAL 8301]
          Length = 69

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            N  +  RK  K+TQ+ +    G   + ++++E G+    I+ +  +  TL   L
Sbjct: 4  VGNAIKERRKILKITQRTLAELAGVGINTLTKIERGEGNPTIEVLEKILDTLGLEL 59


>gi|289550066|ref|YP_003470970.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis
          HKU09-01]
 gi|315659305|ref|ZP_07912169.1| cro/CI family transcriptional regulator [Staphylococcus
          lugdunensis M23590]
 gi|289179598|gb|ADC86843.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis
          HKU09-01]
 gi|315495730|gb|EFU84061.1| cro/CI family transcriptional regulator [Staphylococcus
          lugdunensis M23590]
          Length = 71

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R  +K++Q E+    G ++  I+ +E GK   ++   + +A TL T L  L 
Sbjct: 9  NKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLF 66


>gi|261856939|ref|YP_003264222.1| XRE family transcriptional regulator [Halothiobacillus
          neapolitanus c2]
 gi|261837408|gb|ACX97175.1| transcriptional regulator, XRE family [Halothiobacillus
          neapolitanus c2]
          Length = 184

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R   +L+Q+ +  RTG A + IS +E+G+++ ++  +  +   +   L +  
Sbjct: 5  VGFRLRLVRLRHQLSQRALAKRTGVAHATISLIESGRTSPSVSALKRILAGIPMTLGEFF 64


>gi|218515801|ref|ZP_03512641.1| probable transcriptional regulator protein [Rhizobium etli 8C-3]
          Length = 469

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|205374685|ref|ZP_03227479.1| putative phage repressor [Bacillus coahuilensis m4-4]
          Length = 115

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  + +  R+   L+Q+E+  +    +  I + E G+   +   ++ L+  LD P  +L+
Sbjct: 4  FGEHLKMQRELHGLSQEELAFKARLGKRTIEKYENGEQIPDTQTILKLSTVLDIPASELM 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|220910730|ref|YP_002486040.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
 gi|219867502|gb|ACL47839.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 825

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+ A LTQ +I    G +Q+ +S  E    TI+ + +I  A  L T +  LL
Sbjct: 5  LRGVRERAGLTQSQIAAMLGLSQAQVSRYEQDPGTISTELLIRWAQALGTDIPTLL 60


>gi|170756661|ref|YP_001783198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|170758689|ref|YP_001788899.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169121873|gb|ACA45709.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169405678|gb|ACA54089.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 220

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R +  LTQK++  + G A+++I+E+E+G+  IN   M  ++  L  
Sbjct: 7  KIKEARLKKGLTQKQLAKKLGVAENFINEVESGRKIINESLMNRISKVLGK 57


>gi|169829011|ref|YP_001699169.1| hypothetical protein Bsph_3551 [Lysinibacillus sphaericus C3-41]
 gi|168993499|gb|ACA41039.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 68

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N  R +RK  K+TQ+++    G ++  I  +E+GK   +++    ++   +
Sbjct: 3  NRIRELRKSRKITQEDLSKLVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53


>gi|149001805|ref|ZP_01826778.1| hypothetical protein CGSSp14BS69_08755 [Streptococcus pneumoniae
          SP14-BS69]
 gi|147760263|gb|EDK67252.1| hypothetical protein CGSSp14BS69_08755 [Streptococcus pneumoniae
          SP14-BS69]
          Length = 171

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESKGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|15676049|ref|NP_273179.1| hypothetical protein NMB0121 [Neisseria meningitidis MC58]
 gi|254805833|ref|YP_003084054.1| putative transcriptional regulator [Neisseria meningitidis
          alpha14]
 gi|7225338|gb|AAF40580.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|254669375|emb|CBA08502.1| putative transcriptional regulator [Neisseria meningitidis
          alpha14]
 gi|254671139|emb|CBA08177.1| DNA-binding protein [Neisseria meningitidis alpha153]
 gi|254672825|emb|CBA06986.1| DNA-binding protein [Neisseria meningitidis alpha275]
 gi|261391659|emb|CAX49107.1| putative DNA-binding protein [Neisseria meningitidis 8013]
 gi|308388339|gb|ADO30659.1| hypothetical protein NMBB_0127 [Neisseria meningitidis alpha710]
 gi|316985966|gb|EFV64905.1| helix-turn-helix family protein [Neisseria meningitidis H44/76]
          Length = 125

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|83952252|ref|ZP_00960984.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
 gi|83837258|gb|EAP76555.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM]
          Length = 477

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +   ++      R  R    LTQK+   R G +  +++++E     ++   ++ LA   
Sbjct: 12 PMAPRKLYAGAKLRETRSRLGLTQKDFAARLGVSLPYLNQMENNNRPVSTTVVLALAQEF 71

Query: 74 DTPLWKL 80
             + +L
Sbjct: 72 GFDVTEL 78


>gi|119356485|ref|YP_911129.1| XRE family transcriptional regulator [Chlorobium phaeobacteroides
          DSM 266]
 gi|119353834|gb|ABL64705.1| transcriptional regulator, XRE family [Chlorobium
          phaeobacteroides DSM 266]
          Length = 91

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 3  RRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +RK + P  +    +    F      R  RK A LTQ+++  +    +S +S +E     
Sbjct: 10 KRKDESPDFAKTFEQGYEQFRIGELLRQARKRAGLTQEDLAEKLHTKKSAVSRIENHSED 69

Query: 61 INIDNMIILAHTLDTPL 77
          I +  +   A  L   L
Sbjct: 70 IRLSTLSHYAEALGKKL 86


>gi|117924636|ref|YP_865253.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117925852|ref|YP_866469.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117926017|ref|YP_866634.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608392|gb|ABK43847.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
 gi|117609608|gb|ABK45063.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
 gi|117609773|gb|ABK45228.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1]
          Length = 104

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG----KSTINIDNMIILAHTLDTPLWK 79
             F + RKEA LTQ+EI  R G  +S +S LE+     K + +I  +   A  +   L  
Sbjct: 40  RTFLSARKEAGLTQEEIAKRMGTTKSAVSRLESSLGDHKHSPSIATLRKYAKAVGCKLEI 99

Query: 80  LLKP 83
            L P
Sbjct: 100 KLVP 103


>gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 131

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F +  R +R +  L+Q+E+      + S I+  E GK   +I     LA   + P
Sbjct: 1  MFNDRIRKLRNDKGLSQRELAKMLKISPSTIAMYELGKREPDIAMFQRLADFFNVP 56


>gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 205

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   D     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDYLLK 63


>gi|330971410|gb|EGH71476.1| transcriptional regulator, XRE family protein [Pseudomonas
          syringae pv. aceris str. M302273PT]
          Length = 114

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +   I              R+   LTQ ++  R    +   S LE GK+++++  +I L+
Sbjct: 1  MPKIIAAADKQIGQMIAKRRRALGLTQDQLAERLSMGREAYSRLELGKTSLSVPKLIQLS 60

Query: 71 HTLDTPLWKLLK 82
            LD+ L +L+ 
Sbjct: 61 GALDSGLAELVT 72


>gi|327192173|gb|EGE59146.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 469

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|325473869|gb|EGC77057.1| helix-turn-helix domain-containing protein [Treponema denticola
           F0402]
          Length = 120

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +R       R  R   KLTQ ++  + G  + +IS +ETG+  I+     +L+     
Sbjct: 57  KRQTPAKTLRFYRTLNKLTQLQLAEKLGVTKQFISNMETGQKPISRKTAYLLSDIFGI 114


>gi|322806813|emb|CBZ04382.1| putative DNA-binding protein [Clostridium botulinum H04402 065]
          Length = 77

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELET---GKSTINIDNMIILAHTLDT 75
           + IRK   + QK++ NR G +QS++S+LE     + T+ ID +  LA  L+ 
Sbjct: 2  LKAIRKHKGIKQKDLANRLGVSQSYLSKLENYSIYEVTVTIDIIKSLAIELNI 54


>gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis
          VMC66]
 gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis
          VMC66]
          Length = 205

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   D     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDYLLK 63


>gi|291564063|emb|CBL42879.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [butyrate-producing bacterium SS3/4]
          Length = 120

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     N+RK   L+Q+E+ N    ++  IS+ E+ +S  +   +++L+      L +L+
Sbjct: 3  FNEKLINLRKSKGLSQEELGNELKVSRQTISKWESCQSYPDFQRLVLLSDYFGLTLDELV 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|291540446|emb|CBL13557.1| Helix-turn-helix [Roseburia intestinalis XB6B4]
          Length = 172

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N +  R    L Q E+ +         S++E G    ++D ++ +   L      LL+
Sbjct: 12 AQNLKEYRISHNLKQTEMADLLKMNYQNYSKMERGVYQPSLDKLLEICDILMLTPNDLLQ 71


>gi|262403095|ref|ZP_06079655.1| hypothetical protein VOA_001077 [Vibrio sp. RC586]
 gi|262350594|gb|EEY99727.1| hypothetical protein VOA_001077 [Vibrio sp. RC586]
          Length = 223

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S  I  +   F    +++R +  L Q ++  + G ++  +S  E G+ T +ID +  + 
Sbjct: 1  MSTEIKADESTFGGRLKSVRTQLGLNQSQMAGQIGVSKDTLSRYERGELTPSIDVLKRII 60

Query: 71 HTLDTP 76
           +  + 
Sbjct: 61 ESYSSE 66


>gi|257876868|ref|ZP_05656521.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811034|gb|EEV39854.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 281

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F  N R+IR + K+TQK +      +QS +S +E  +   N+  M  +   L   L +
Sbjct: 6  ESFGQNIRSIRLKRKMTQKMLAEDI-CSQSVLSRIENNEELPNVWVMYQICQRLGVTLDQ 64

Query: 80 LL 81
          ++
Sbjct: 65 VM 66


>gi|257867973|ref|ZP_05647626.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257874303|ref|ZP_05653956.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257802056|gb|EEV30959.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808467|gb|EEV37289.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 281

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F  N R+IR + K+TQK +      +QS +S +E  +   N+  M  +   L   L +
Sbjct: 6  ESFGQNIRSIRLKRKMTQKMLAEDI-CSQSVLSRIENNEELPNVWVMYQICQRLGVTLDQ 64

Query: 80 LL 81
          ++
Sbjct: 65 VM 66


>gi|90419918|ref|ZP_01227827.1| possible transcriptional regulator [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90335959|gb|EAS49707.1| possible transcriptional regulator [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 472

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E  IF     R IR    LTQ  +    G + S+++ +E  +  + +  ++ L+ T D  
Sbjct: 3  ENKIFAGPRIRRIRNGLGLTQTAMAEELGISPSYLNLIERNQRPLTVQLILKLSQTYDVD 62

Query: 77 LWKL 80
          +  L
Sbjct: 63 IGDL 66


>gi|17987085|ref|NP_539719.1| MerR family transcriptional regulator [Brucella melitensis bv. 1
          str. 16M]
 gi|225852683|ref|YP_002732916.1| hypothetical protein BMEA_A1231 [Brucella melitensis ATCC 23457]
 gi|256044838|ref|ZP_05447742.1| hypothetical protein Bmelb1R_10124 [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256113744|ref|ZP_05454548.1| hypothetical protein Bmelb3E_13308 [Brucella melitensis bv. 3
          str. Ether]
 gi|17982745|gb|AAL51983.1| transcriptional regulator, merr family [Brucella melitensis bv. 1
          str. 16M]
 gi|225641048|gb|ACO00962.1| protein of unknown function DUF955 [Brucella melitensis ATCC
          23457]
 gi|326409205|gb|ADZ66270.1| helix-turn-helix domain-containing protein [Brucella melitensis
          M28]
 gi|326538914|gb|ADZ87129.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 470

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|58696655|ref|ZP_00372209.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58537179|gb|EAL60281.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 279

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R   + TQK++ ++ G     I E E G +TI  D +  +A  L   +  LL
Sbjct: 146 GQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 204


>gi|25011800|ref|NP_736195.1| hypothetical protein gbs1761 [Streptococcus agalactiae NEM316]
 gi|77413672|ref|ZP_00789856.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|24413341|emb|CAD47420.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160272|gb|EAO71399.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 197

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIYSLLLLSQIFQVSLDQLIK 63


>gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1]
 gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1]
          Length = 118

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 30/54 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  + +R++  LTQ+E  ++ G +Q  +S +E    +++I  + I++     P+
Sbjct: 2  SKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIISQYFHVPI 55


>gi|306840350|ref|ZP_07473120.1| Cro/CI family transcriptional regulator [Brucella sp. BO2]
 gi|306844086|ref|ZP_07476680.1| Cro/CI family transcriptional regulator [Brucella sp. BO1]
 gi|306275529|gb|EFM57261.1| Cro/CI family transcriptional regulator [Brucella sp. BO1]
 gi|306289682|gb|EFM60876.1| Cro/CI family transcriptional regulator [Brucella sp. BO2]
          Length = 470

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|257056871|ref|YP_003134703.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256586743|gb|ACU97876.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 382

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID---NMIILAHTLDTPLWK 79
              R +R+   LT ++     G  + ++S++E G+  + +D    ++ +A  L   L  
Sbjct: 5  GATIRRLRRWRGLTIEQAAGLAGITKGYLSKIENGR--VAVDKRSTLVAIADALRVSLVD 62

Query: 80 L 80
          +
Sbjct: 63 I 63


>gi|225861745|ref|YP_002743254.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229349|ref|ZP_06963030.1| transcriptional activator [Streptococcus pneumoniae str. Canada
          MDR_19F]
 gi|298255903|ref|ZP_06979489.1| transcriptional activator [Streptococcus pneumoniae str. Canada
          MDR_19A]
 gi|298503691|ref|YP_003725631.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A]
 gi|225726429|gb|ACO22280.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239286|gb|ADI70417.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A]
          Length = 287

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE  L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELGLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|254515932|ref|ZP_05127992.1| helix-turn-helix domain protein [gamma proteobacterium NOR5-3]
 gi|219675654|gb|EED32020.1| helix-turn-helix domain protein [gamma proteobacterium NOR5-3]
          Length = 265

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +  R+   L+Q  +      +Q  +S LE+G+S  + + ++ +A  L+ PL +
Sbjct: 13 KQWRQRRHLSQLHLAETAAISQRHLSWLESGRSQPSREMVLKIAEALEVPLRE 65


>gi|212694772|ref|ZP_03302900.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855]
 gi|237710957|ref|ZP_04541438.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|237727255|ref|ZP_04557736.1| transcriptional regulator [Bacteroides sp. D4]
 gi|265750545|ref|ZP_06086608.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
 gi|212662626|gb|EEB23200.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855]
 gi|229434111|gb|EEO44188.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4]
 gi|229454801|gb|EEO60522.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA]
 gi|263237441|gb|EEZ22891.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA]
          Length = 191

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+  +++  E+  R+G A+  I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRL 62


>gi|217961401|ref|YP_002339969.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187]
 gi|229140647|ref|ZP_04269198.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
 gi|217066800|gb|ACJ81050.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187]
 gi|228642820|gb|EEK99100.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N +  R    LTQ E   +   ++S +  LE   +  ++D +  +A  L   +  L+
Sbjct: 4  FGENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGISVDALM 63


>gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC
          29149]
 gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
 gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC
          29149]
 gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia
          hansenii DSM 20583]
          Length = 128

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKLL 81
           R  RKE  ++Q E+  + G +Q  IS +E  G   I  + +I LA     P+  L+
Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIPCNLLIKLADIFHVPIDILI 68


>gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49]
          Length = 132

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 1  MPRRKRDEPHLS-DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M  R    P  + DA+L  R          R+   LTQ ++       Q  IS  E G  
Sbjct: 1  MTTRPTSLPDDAQDALLAAR--VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTR 58

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
             +  +  L+  LD  + +LL+
Sbjct: 59 MPTLHRLQQLSDALDCSVDQLLQ 81


>gi|302537873|ref|ZP_07290215.1| DNA-binding protein [Streptomyces sp. C]
 gi|302446768|gb|EFL18584.1| DNA-binding protein [Streptomyces sp. C]
          Length = 282

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R+   ++Q E+  R   +   IS +ETG+S  + + ++ LA  LD P+ +
Sbjct: 26 VGALLRTWRERRGISQLELAGRADSSSRHISFIETGRSRPSEEMVLRLADRLDVPVRE 83


>gi|294629832|ref|ZP_06708392.1| PE-PGRS family protein [Streptomyces sp. e14]
 gi|292833165|gb|EFF91514.1| PE-PGRS family protein [Streptomyces sp. e14]
          Length = 410

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N RN R+ A ++Q+++      +   + ++E G+  ++++++  LA  L T    L 
Sbjct: 6  ENVRNHRRRAGMSQEQLAEAASLSVGVVRKVEQGQ-NVSVESLNALARALGTETSSLF 62


>gi|257051447|ref|YP_003129280.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
           12940]
 gi|256690210|gb|ACV10547.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
           12940]
          Length = 181

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           F    R+ R+ A ++Q+E+ ++     S I +LE G    + D    L   LD  L +
Sbjct: 94  FDQRIRSAREAADMSQEELADQLNEKASLIRKLEHGDHLPSDDVQQKLERALDIELTE 151


>gi|229096925|ref|ZP_04227894.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
 gi|228686535|gb|EEL40444.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    +++RK   L Q+++ +    ++S I+  E G S  ++  +  LA   +  L  L
Sbjct: 4  FSETLKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDVL 62


>gi|255280273|ref|ZP_05344828.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
 gi|255269364|gb|EET62569.1| DNA-binding protein [Bryantella formatexigens DSM 14469]
          Length = 421

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F       RKE  +TQKE   R    +S +S+ E G S  +I  +  +   L+    
Sbjct: 11 KKTFGAFVLRRRKELGMTQKEFAARLYVTESAVSKWERGMSYPDITLIRSICSVLEVSEH 70

Query: 79 KLLK 82
          +LL 
Sbjct: 71 ELLT 74


>gi|163791646|ref|ZP_02186042.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7]
 gi|159873068|gb|EDP67176.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+     ++ R + K +Q ++  +   ++  IS+ E   S   +DN++ L+      +  
Sbjct: 1  MLLGKKLKSSRVKKKYSQNDVAEQLHISRQSISKWENDISYPELDNLVKLSTYYQVSIDH 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|42520474|ref|NP_966389.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225630361|ref|YP_002727152.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|225630755|ref|YP_002727546.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|42410213|gb|AAS14323.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|225592342|gb|ACN95361.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|225592736|gb|ACN95755.1| transcriptional regulator, putative [Wolbachia sp. wRi]
          Length = 303

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R   + TQK++ ++ G     I E E G +TI  D +  +A  L   +  LL
Sbjct: 170 GQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 228



 Score = 38.1 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + R     TQ E+ +  G     ++  E G   I I+ + ++A  L      LL
Sbjct: 16 GQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 74


>gi|29348192|ref|NP_811695.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569505|ref|ZP_04846915.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298386116|ref|ZP_06995673.1| DNA-binding protein [Bacteroides sp. 1_1_14]
 gi|29340095|gb|AAO77889.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841524|gb|EES69605.1| transcriptional regulator [Bacteroides sp. 1_1_6]
 gi|298261344|gb|EFI04211.1| DNA-binding protein [Bacteroides sp. 1_1_14]
          Length = 191

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|86139756|ref|ZP_01058323.1| hypothetical protein MED193_02595 [Roseobacter sp. MED193]
 gi|85823647|gb|EAQ43855.1| hypothetical protein MED193_02595 [Roseobacter sp. MED193]
          Length = 85

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 32/53 (60%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +A L QK++ +R    QS ++ +E+G+  I++  +++LA  +    +++L
Sbjct: 20 ARIKAGLGQKDLADRLKCHQSLVARIESGERRIDVVELVVLARAIGFDPFEVL 72


>gi|170718165|ref|YP_001785192.1| helix-turn-helix domain-containing protein [Haemophilus somnus
          2336]
 gi|168826294|gb|ACA31665.1| helix-turn-helix domain protein [Haemophilus somnus 2336]
          Length = 134

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R IR+  + +Q+++  +   + +  +++E G++ + +D +  +A  LD  + +L++
Sbjct: 5  EKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDVVELIQ 63


>gi|330468607|ref|YP_004406350.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328811578|gb|AEB45750.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 77

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN R +R    ++TQ ++  R G  +  +  +E G+ + +++    +A      L  + +
Sbjct: 9  NNIRALRFAHDEMTQADLAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFGVRLDDVFQ 68


>gi|256825390|ref|YP_003149350.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus
          sedentarius DSM 20547]
 gi|256688783|gb|ACV06585.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus
          sedentarius DSM 20547]
          Length = 507

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 28/52 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           N  R+ R    +TQ ++ +    +QS ++ +E GK  ++++ +  ++  LD
Sbjct: 10 GNLIRDARLHRGMTQTQVADILNTSQSAVARMEQGKQNLSLETVAKVSEALD 61


>gi|206725168|dbj|BAG71784.1| repressor of rdgA and rdgB [Pectobacterium carotovorum subsp.
          carotovorum]
          Length = 244

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          +       +  R    L+QK + +  G +Q+ I ++E GK++     ++ L++ L   P 
Sbjct: 2  KTTLAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKASQTT-KIVELSNALHVRPE 60

Query: 78 W 78
          W
Sbjct: 61 W 61


>gi|311748183|ref|ZP_07721968.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1]
 gi|126576672|gb|EAZ80920.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1]
          Length = 63

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R+ R    +TQ+++    G ++  I+ +E  K   ++     ++   + P+  + +
Sbjct: 3  NRVRDFRTAKGMTQEDLAEIIGVSRQTINAIEKEKFDPSLPTAFKMSKLFEKPIEDIFQ 61


>gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp.
          MED297]
 gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp.
          MED297]
          Length = 181

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+A ++Q+E+  R G   S IS +E    + ++ ++  +   +   L +  
Sbjct: 3  VGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNVSPSVSSLQKVLSGMSMTLLEFF 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813]
          Length = 164

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ+ + +  G     +   E GK+ I  D    LA   +  +  LL
Sbjct: 2  NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQALADYFNVSVGYLL 59


>gi|293375426|ref|ZP_06621707.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|325844490|ref|ZP_08168217.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|292645979|gb|EFF64008.1| DNA-binding protein [Turicibacter sanguinis PC909]
 gi|325489164|gb|EGC91548.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 325

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFA-QSWISELETGKSTINIDNMIILAHTLDTPLW 78
           +     + I +E  +TQ E+    G   +  ++++  GK   +++ +  L + L   + 
Sbjct: 17 QLLTQKLKEIAQEKGMTQSELA--AGITPRDHLNKILNGKRNPSLELLYQLCNKLRVDIR 74

Query: 79 KLLK 82
           L++
Sbjct: 75 VLIE 78


>gi|290957377|ref|YP_003488559.1| hypothetical protein SCAB_29011 [Streptomyces scabiei 87.22]
 gi|260646903|emb|CBG70001.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 131

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R E KL  +E+  R+G     ++ LE GK T   D +  L   LD P   L 
Sbjct: 9  FGEYLHGLRHERKLGVRELARRSGIDAGGLTRLERGKITPQPDTLKALGAALDVPFADLF 68


>gi|239832075|ref|ZP_04680404.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG
          3301]
 gi|239824342|gb|EEQ95910.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG
          3301]
          Length = 490

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +   ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA   
Sbjct: 20 KMAPRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENY 79

Query: 74 DT 75
            
Sbjct: 80 QI 81


>gi|182625365|ref|ZP_02953138.1| putative helix-turn-helix domain protein [Clostridium perfringens
          D str. JGS1721]
 gi|177909362|gb|EDT71814.1| putative helix-turn-helix domain protein [Clostridium perfringens
          D str. JGS1721]
          Length = 224

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82
          R++  +++ ++    G + ++I++LE G K+  +++  + +A+ L+ PL   L+
Sbjct: 11 REKKGISKSQLAREIGVSPAYITKLENGEKTNPSLELKVKIANALEQPLTVFLE 64


>gi|126658934|ref|ZP_01730076.1| transcriptional regulator, XRE family protein [Cyanothece sp.
          CCY0110]
 gi|126619732|gb|EAZ90459.1| transcriptional regulator, XRE family protein [Cyanothece sp.
          CCY0110]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N R+ A LTQ E+  R    QS++S+ E G+  +++   + + + L+     LLK
Sbjct: 7  NARQSANLTQTELSKRLNKPQSYVSKYERGERRLDVIEFLEVCNALNIDPVILLK 61


>gi|318061088|ref|ZP_07979809.1| putative DNA-binding protein [Streptomyces sp. SA3_actG]
 gi|318078370|ref|ZP_07985702.1| putative DNA-binding protein [Streptomyces sp. SA3_actF]
          Length = 280

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S+     R+      R +R EA L  K +    G+ +S +S LE G+ T +  ++   A
Sbjct: 1  MSNDFQSARVALGARLRELRTEAGLDGKSVAELLGWQRSKVSRLENGRQTASRPDLETWA 60

Query: 71 HTLDTP 76
            +  P
Sbjct: 61 QAVGRP 66


>gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R    L+Q+E+  R G   S IS +E  K + ++ ++  +   +   L     
Sbjct: 4  GARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKVSPSVSSLKKVLDGIPISLADFFT 63


>gi|296102379|ref|YP_003612525.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295056838|gb|ADF61576.1| XRE family transcriptional regulator [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 175

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +  ++   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LATTLKTQRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 TP 68


>gi|293402278|ref|ZP_06646416.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304385|gb|EFE45636.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 153

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +    +RK++  +Q+E+ +     +  IS  E G+S    D  I LA      L  L
Sbjct: 1  MLKDKLIALRKKSGYSQQELADLLSLTRQTISNWENGQSAPTFDKAIELAAIYHISLDDL 60


>gi|320008070|gb|ADW02920.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 241

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R+    T   +   TG A S +S +ETG+    ++ ++ LA      L  L
Sbjct: 14 GPRLRAARERHGSTLAGVSCATGIAPSTLSRIETGRRKPTLEVVLRLAEEYGVSLDYL 71


>gi|256848775|ref|ZP_05554209.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|295692650|ref|YP_003601260.1| regulatory protein munl [Lactobacillus crispatus ST1]
 gi|256714314|gb|EEU29301.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|295030756|emb|CBL50235.1| Regulatory protein munl [Lactobacillus crispatus ST1]
          Length = 249

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+   +F+ +R    LTQ+++       +S+ S +E G S+I  DN++ + +     + +
Sbjct: 1  MMIGEHFKRVRNSKNLTQEQMAAGI-VNRSFYSRVENGSSSITADNLMKILYKHGLAMTE 59

Query: 80 LLK 82
           L+
Sbjct: 60 FLR 62


>gi|302528495|ref|ZP_07280837.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302437390|gb|EFL09206.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 149

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R   + T ++I      +  ++SE+E G+   + + +  +   L+ PL 
Sbjct: 6  REAIGDRLRHARTNQRRTLRDISRAARVSLGYLSEVERGQKEASSELLASICEALELPLG 65

Query: 79 KLL 81
          +LL
Sbjct: 66 ELL 68


>gi|271966776|ref|YP_003340972.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270509951|gb|ACZ88229.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 198

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +R E   + +E+  RTG ++S +S LE  + +     +  L       + +LL
Sbjct: 21 LADRLAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAMLGKLCAAYGRTMSQLL 80


>gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
 gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R++  ++ +++   TG  +S++S++E   +  +I   + ++      + +LL
Sbjct: 23 LGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAVPSITTALKVSRVFGQTVGQLL 82


>gi|153853770|ref|ZP_01995126.1| hypothetical protein DORLON_01117 [Dorea longicatena DSM 13814]
 gi|149753520|gb|EDM63451.1| hypothetical protein DORLON_01117 [Dorea longicatena DSM 13814]
          Length = 77

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RKE  L Q +       ++  IS +ETGK   +++    ++      + ++ 
Sbjct: 9  NKVEQLRKERGLNQDDFAKMLRVSRQTISSIETGKYNPSLELAFAISDFFGKRIEEIF 66


>gi|148998521|ref|ZP_01825962.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP11-BS70]
 gi|168576609|ref|ZP_02722475.1| transcriptional activator [Streptococcus pneumoniae MLV-016]
 gi|307068599|ref|YP_003877565.1| transposase-like protein, IS1515 [Streptococcus pneumoniae AP200]
 gi|147755714|gb|EDK62760.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP11-BS70]
 gi|183577671|gb|EDT98199.1| transcriptional activator [Streptococcus pneumoniae MLV-016]
 gi|306410136|gb|ADM85563.1| Transposase-like protein, IS1515 [Streptococcus pneumoniae AP200]
          Length = 415

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|115374631|ref|ZP_01461910.1| putative transcriptional repressor [Stigmatella aurantiaca
          DW4/3-1]
 gi|310819938|ref|YP_003952296.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
 gi|115368397|gb|EAU67353.1| putative transcriptional repressor [Stigmatella aurantiaca
          DW4/3-1]
 gi|309393010|gb|ADO70469.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
          Length = 124

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +     R I  +  R  R  A LTQ ++ +      +  S LE G    ++ N+ +L   
Sbjct: 15 EPSRPLRSIVGDTLRAARLRAHLTQVDVAHLIDIDPAVYSRLERGLRLPSLQNLYLLCTA 74

Query: 73 LDTPLWKLL 81
          L     +LL
Sbjct: 75 LRATPNELL 83


>gi|77408842|ref|ZP_00785569.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae COH1]
 gi|77172528|gb|EAO75670.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae COH1]
          Length = 71

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  + +R    + Q E+   TG ++  IS +E G+ T ++   + ++      L  
Sbjct: 3  LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKISQVFKESLEN 62

Query: 80 LL 81
          + 
Sbjct: 63 VF 64


>gi|332664686|ref|YP_004447474.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332333500|gb|AEE50601.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 113

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R +R E K TQKE+ +R GF+  +++++  G   + ++ +  +   L  
Sbjct: 39 LRYLR-EHKTTQKELADRLGFSPQYVNKIVKGSENLTLETICKIQKALGI 87


>gi|322390208|ref|ZP_08063739.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
 gi|321143070|gb|EFX38517.1| XRE family transcriptional regulator [Streptococcus parasanguinis
          ATCC 903]
          Length = 116

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK+  ++Q+E+  R      +I++LE     + I ++  +   L+    +  
Sbjct: 12 AQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVISALELTPEEFF 70


>gi|317055038|ref|YP_004103505.1| XRE family transcriptional regulator [Ruminococcus albus 7]
 gi|315447307|gb|ADU20871.1| transcriptional regulator, XRE family [Ruminococcus albus 7]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +I  N+ +  R E +++Q  +    G +++ IS +ETG+ +      +I+   LD   
Sbjct: 3  ETLILKNHLKEARAEKRISQGALAKMVGVSRNTISSIETGQFSPTAKLALIICIALDKKF 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 EELF 66


>gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206]
 gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3]
 gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206]
          Length = 216

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RKE K+ Q  +    G +   IS+ E  ++  N +N++ LA  L      
Sbjct: 4  QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDY 63

Query: 80 LLK 82
          LLK
Sbjct: 64 LLK 66


>gi|294814576|ref|ZP_06773219.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294327175|gb|EFG08818.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 283

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D   +ER  F    R +R+  K TQ E+  R G++   IS +ET      +     L  
Sbjct: 13 PDGSPQER--FGVRVRRLREARKWTQDELAARMGYSGRHISAIETANKPPTLPVARALDI 70

Query: 72 TLDTP 76
               
Sbjct: 71 AFGLE 75


>gi|260565561|ref|ZP_05836045.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|265991265|ref|ZP_06103822.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|265995101|ref|ZP_06107658.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|265999437|ref|ZP_05466359.2| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|260151629|gb|EEW86723.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|262766214|gb|EEZ12003.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
          Ether]
 gi|263002049|gb|EEZ14624.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
          Rev.1]
 gi|263093955|gb|EEZ17889.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 2 str. 63/9]
          Length = 472

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|254714255|ref|ZP_05176066.1| hypothetical protein BcetM6_13066 [Brucella ceti M644/93/1]
 gi|254717691|ref|ZP_05179502.1| hypothetical protein BcetM_15065 [Brucella ceti M13/05/1]
          Length = 470

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|254393477|ref|ZP_05008616.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|197707103|gb|EDY52915.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
          Length = 279

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D   +ER  F    R +R+  K TQ E+  R G++   IS +ET      +     L  
Sbjct: 9  PDGSPQER--FGVRVRRLREARKWTQDELAARMGYSGRHISAIETANKPPTLPVARALDI 66

Query: 72 TLDTP 76
               
Sbjct: 67 AFGLE 71


>gi|163843452|ref|YP_001627856.1| hypothetical protein BSUIS_A1235 [Brucella suis ATCC 23445]
 gi|254693892|ref|ZP_05155720.1| hypothetical protein Babob3T_04377 [Brucella abortus bv. 3 str.
          Tulya]
 gi|254701927|ref|ZP_05163755.1| hypothetical protein Bsuib55_13872 [Brucella suis bv. 5 str. 513]
 gi|254704472|ref|ZP_05166300.1| hypothetical protein Bsuib36_11190 [Brucella suis bv. 3 str. 686]
 gi|254706633|ref|ZP_05168461.1| hypothetical protein BpinM_06519 [Brucella pinnipedialis
          M163/99/10]
 gi|254710258|ref|ZP_05172069.1| hypothetical protein BpinB_08297 [Brucella pinnipedialis B2/94]
 gi|256031752|ref|ZP_05445366.1| hypothetical protein BpinM2_14069 [Brucella pinnipedialis
          M292/94/1]
 gi|256369612|ref|YP_003107122.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|294852525|ref|ZP_06793198.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026]
 gi|163674175|gb|ABY38286.1| protein of unknown function DUF955 [Brucella suis ATCC 23445]
 gi|255999774|gb|ACU48173.1| transcriptional regulator, Cro/CI family [Brucella microti CCM
          4915]
 gi|294821114|gb|EFG38113.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026]
          Length = 470

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|163839475|ref|YP_001623880.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
 gi|162952951|gb|ABY22466.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209]
          Length = 144

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 35/77 (45%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           +  P     ++  R    +  R++R+    T +E+ +    +  ++SE+E G+   + + 
Sbjct: 24  KVAPGAQKKMVVLRHEIGDVLRDLRQRQGRTLREVSHNARVSLGYLSEVERGQKEASSEL 83

Query: 66  MIILAHTLDTPLWKLLK 82
           +  +   LD P   +L+
Sbjct: 84  LSSICSALDVPFSLMLR 100


>gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S]
          Length = 158

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +RK+   +Q ++ +  GF++  ++  E G    +   ++ +A   +     L
Sbjct: 1  MFSKRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|186470871|ref|YP_001862189.1| XRE family transcriptional regulator [Burkholderia phymatum STM815]
 gi|184197180|gb|ACC75143.1| transcriptional regulator, XRE family [Burkholderia phymatum
           STM815]
          Length = 234

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                R+ R   +LT K +  + G ++S +S++E G +T ++  +  +A  LDT +  L+
Sbjct: 45  LGTRLRHARMVQQLTLKALAEQAGCSESLLSKVEGGHATPSLATLHRIALALDTNIAALV 104


>gi|116510851|ref|YP_808067.1| XRE family transcriptional regulator [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116106505|gb|ABJ71645.1| Transcriptional regulator, xre family [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 107

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  RK   L+Q+E+      ++  I + ETGKS    D +I+L+   D  L  LLK
Sbjct: 7  IKENRKLKNLSQEELAKELHISRQSILKWETGKSLPTTDQLILLSEIFDCSLDTLLK 63


>gi|70725716|ref|YP_252630.1| hypothetical protein SH0715 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68446440|dbj|BAE04024.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 65

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R   K++Q E+    G ++  I+ +E  K   ++   I +A TL   L  L 
Sbjct: 2  NKVKVYRGVKKISQLELARSVGVSRQTINMIENDKYNPSLKLCINIAKTLGVTLNDLF 59


>gi|58699659|ref|ZP_00374339.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|58533824|gb|EAL58143.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
          Length = 226

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 16 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 75

Query: 79 KLL 81
           L+
Sbjct: 76 DLI 78



 Score = 41.9 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               +  R   + TQK++  +    +  IS  E G+  I ++ +  +A TL   
Sbjct: 173 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 226


>gi|332283797|ref|YP_004415708.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7]
 gi|330427750|gb|AEC19084.1| hypothetical protein PT7_0544 [Pusillimonas sp. T7-7]
          Length = 111

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             +RK A LTQ ++ +R G  +  +  LE+G     +  ++ +A  +   L  +L P
Sbjct: 9  LEALRKAAGLTQGQLADRAGLNRMTVQRLESGSLDPRVSTLLEMARAMGMEL--MLVP 64


>gi|322377590|ref|ZP_08052080.1| DNA-binding protein [Streptococcus sp. M334]
 gi|321281355|gb|EFX58365.1| DNA-binding protein [Streptococcus sp. M334]
          Length = 303

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P +
Sbjct: 1  MLIGQKIKEIRIEKGISRSDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|313124417|ref|YP_004034676.1| hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
 gi|312280980|gb|ADQ61699.1| Hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
          Length = 143

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  +  R++RK+  L+QKE+  +    Q+ ++  E G S  +I  +  L    D     
Sbjct: 6  MMLPSKLRDLRKKHGLSQKELAEKLMTTQAKVASWENGDSVPDISYIAKLTVLYDVSADY 65

Query: 80 LLK 82
          LLK
Sbjct: 66 LLK 68


>gi|296503848|ref|YP_003665548.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|296324900|gb|ADH07828.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 67

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 IF 62


>gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv.
          vasculorum NCPPB702]
 gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +R+ +  +Q E+  R G ++  I+ LETGK   ++     +A      +  + 
Sbjct: 3  SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60


>gi|238924501|ref|YP_002938017.1| hypothetical protein EUBREC_2142 [Eubacterium rectale ATCC 33656]
 gi|238876176|gb|ACR75883.1| Hypothetical protein EUBREC_2142 [Eubacterium rectale ATCC 33656]
          Length = 108

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     +  +E  L   ++   +G   + IS    G  T  +DN+++LA  LD  +  LL
Sbjct: 6  FSERLSHCMQEHHLNGNDLAALSGVTAATISRYLNGLRTPTVDNVVLLADALDVSVDYLL 65


>gi|167747600|ref|ZP_02419727.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662]
 gi|167652962|gb|EDR97091.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662]
          Length = 110

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK+  LT +++ +       +I +LE+GK   ++  ++ L   L+T    LL
Sbjct: 6  LGRKIREKRKQCGLTSQQLADLCHVHDGYIRQLESGKKVPSMPLLLSLCDELETSPNYLL 65

Query: 82 K 82
          +
Sbjct: 66 E 66


>gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 168

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LANKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62


>gi|332830202|gb|EGK02830.1| hypothetical protein HMPREF9455_01080 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 80

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+++ +  R  A LTQ+E+  +    +  I  LE GK   ++   I ++  L  P+  + 
Sbjct: 18 FISHLKEYRILAGLTQEELAEKVNVRRETIIRLEAGKYNPSLKLGIDISRVLKAPIEDIF 77

Query: 82 K 82
          +
Sbjct: 78 E 78


>gi|330832565|ref|YP_004401390.1| nucleotide sugar dehydrogenase [Streptococcus suis ST3]
 gi|329306788|gb|AEB81204.1| nucleotide sugar dehydrogenase [Streptococcus suis ST3]
          Length = 496

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE   +Q+E+ + TG  ++ IS+LE G+   +I  ++ L++ LD  +  L 
Sbjct: 19 RKELGYSQQELSDLTGINRAMISKLEQGEYLPSIPQLLSLSNVLDFEINSLF 70


>gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 354

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     +   +RK   +TQ+++    G +   +S+ ET  S  +I  +  LA  L T L 
Sbjct: 2  KENLGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSSCPDITLLCPLARALGTNLD 61

Query: 79 KLLK 82
           LL+
Sbjct: 62 TLLQ 65


>gi|319938782|ref|ZP_08013146.1| XRE family transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
 gi|319811832|gb|EFW08098.1| XRE family transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
          Length = 91

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    L Q E+  + G ++  +S +E G+   ++   + +AH     +  + 
Sbjct: 5  NRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEYAPSVIIALKIAHIFGENVENVF 62


>gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp.
          3_2_56FAA]
 gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp.
          3_2_56FAA]
          Length = 159

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  RK   LTQ E+    G     +S+ E GK   ++     L   L   L +L+
Sbjct: 7  GNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65


>gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus gasseri MV-22]
 gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus gasseri MV-22]
          Length = 116

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R +R   +L+Q E+      +Q  I++ E GK+  +   +  LA   D     L
Sbjct: 1  MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium
          pseudotuberculosis C231]
 gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium
          pseudotuberculosis 1002]
 gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium
          pseudotuberculosis I19]
          Length = 475

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 23/57 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R +RKE  L+Q  +      + S+++++E     + +  +  +      
Sbjct: 3  KTYVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGV 59


>gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2]
 gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2]
          Length = 207

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N + +RK  ++TQKE+ N+       IS+ E   S  ++D ++ L+         LL
Sbjct: 5  GENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNISYPDLDMLVKLSQLFHISTDALL 63


>gi|227329055|ref|ZP_03833079.1| XRE family transcriptional regulator [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
          Length = 112

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     RN R E  +T +E+  R G ++  +   E G    +I  +  LA  +  PL+
Sbjct: 19 LLGLMLRNARIERNMTVEELAERAGVSRGLVYRAEEGDMGCSIGAVFELATLVGVPLF 76


>gi|326443632|ref|ZP_08218366.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 273

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           A    R +F    R  R++A LTQ+ +  +   ++S +S +E  +
Sbjct: 6  KAAPSARQLFGTKLRRYREDAGLTQEALGLKVQISKSHLSRIENAE 51


>gi|218283651|ref|ZP_03489613.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989]
 gi|218215711|gb|EEC89249.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989]
          Length = 145

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +R    ++Q++     G  ++ +S++E G+++++  N++ +    + 
Sbjct: 24 GTRVKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAICRQFNV 76


>gi|254390786|ref|ZP_05005998.1| hypothetical protein SSCG_03325 [Streptomyces clavuligerus ATCC
          27064]
 gi|197704485|gb|EDY50297.1| hypothetical protein SSCG_03325 [Streptomyces clavuligerus ATCC
          27064]
          Length = 105

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  RK A +TQ  +  R G ++  I+ +E G     +  + ++A  L+    +LL P
Sbjct: 14 IREARKRAGVTQVYLGRRAGLSRGSIANIEAGTQVPPLYRLALIALALNVQPAELLPP 71


>gi|169786969|ref|YP_001708781.1| putative HTH-like transcriptional regulator [Acinetobacter
          baumannii AYE]
 gi|293611364|ref|ZP_06693661.1| transcriptional regulator [Acinetobacter sp. SH024]
 gi|169147130|emb|CAM84797.1| putative HTH-like transcriptional regulator [Acinetobacter
          baumannii AYE]
 gi|292826375|gb|EFF84743.1| transcriptional regulator [Acinetobacter sp. SH024]
          Length = 101

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLW 78
          +     R  R   +++Q E+  R G   + +S LE G   ++++N++ +A  L     L 
Sbjct: 14 LLGERLRKQRLFLEMSQAEVAARAGVGVNTVSNLEAG-RNVSVENLVRIAMVLGRLNELQ 72

Query: 79 KLLKP 83
          +L +P
Sbjct: 73 ELFQP 77


>gi|167834922|ref|ZP_02461805.1| hypothetical protein Bpse38_00430 [Burkholderia thailandensis
          MSMB43]
          Length = 131

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +    +RK+  LTQ+++ +R       ++  E G S   +D +  LA  L      LL
Sbjct: 3  FSDRLAMLRKQRGLTQQQLADRAKVHLVQVNRYEAGASRPAVDVVKRLAVALSVSADALL 62


>gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662]
 gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662]
          Length = 159

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  +  RK   LTQ E+    G     +S+ E GK   ++     L   L   L +L+
Sbjct: 7  GNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65


>gi|161619141|ref|YP_001593028.1| hypothetical protein BCAN_A1208 [Brucella canis ATCC 23365]
 gi|161335952|gb|ABX62257.1| protein of unknown function DUF955 [Brucella canis ATCC 23365]
          Length = 470

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|170725048|ref|YP_001759074.1| XRE family transcriptional regulator [Shewanella woodyi ATCC
          51908]
 gi|169810395|gb|ACA84979.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC
          51908]
          Length = 239

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ R E   +Q E+    G  QS++S+LE  KS  + +    L   L     +
Sbjct: 1  MTIGKQIKHFRAERNFSQPELAELAGIEQSYLSKLENDKSIPSNEIFRNLLSALSVNTQE 60

Query: 80 LL 81
           +
Sbjct: 61 FI 62


>gi|32475356|ref|NP_868350.1| transcription regulator [Rhodopirellula baltica SH 1]
 gi|32445897|emb|CAD78628.1| similar to transcription regulator [Rhodopirellula baltica SH 1]
          Length = 362

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+Q ++  R G +   +   E+G+  ++I  M  +A  L     +L++
Sbjct: 22 QLKQARQSLGLSQLQLAMRAGVSSRTVQFAESGQ-NVSIGTMRRIAGALGMQADQLVR 78


>gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii
          subsp. lactis DSM 20072]
          Length = 122

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ +     R++R+   ++Q+E+    G ++  IS  E G+    +  +  +A+     
Sbjct: 2  EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVS 60


>gi|296315170|ref|ZP_06865111.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768]
 gi|296837979|gb|EFH21917.1| DNA-binding protein [Neisseria polysaccharea ATCC 43768]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551]
 gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +RK  +++Q E+    G ++  I+ +E  K   ++     LA  L   + +L
Sbjct: 1  MVENRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAAELGATVDEL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|260430343|ref|ZP_05784316.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260418372|gb|EEX11629.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 303

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  + ++ +E+ NR G +++ +   E G+  + I+ +I LA  L+  L  LL
Sbjct: 9  GQRLRAFRLGSGMSAEEVANRIGISRTAVYRFEKGEV-VKIETLIGLAELLNVSLPTLL 66


>gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 275

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +RKE  LTQKE+ ++       IS+ E G S  +I  +I L+  LD    ++L
Sbjct: 13 LRKEKNLTQKELADKLNITNKAISKWERGISCPDISLLIPLSDILDVTTNEIL 65


>gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS]
 gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11
          str. 11368]
 gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615]
 gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS]
 gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3]
 gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli
          'BL21-Gold(DE3)pLysS AG']
 gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)]
 gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11
          str. 11368]
 gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615]
 gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)]
 gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253]
          Length = 216

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RKE K+ Q  +    G +   IS+ E  ++  N +N++ LA  L      
Sbjct: 4  QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDY 63

Query: 80 LLK 82
          LLK
Sbjct: 64 LLK 66


>gi|150005248|ref|YP_001299992.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254883715|ref|ZP_05256425.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294777357|ref|ZP_06742809.1| DNA-binding protein [Bacteroides vulgatus PC510]
 gi|319643440|ref|ZP_07998063.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
 gi|149933672|gb|ABR40370.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482]
 gi|254836508|gb|EET16817.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA]
 gi|294448825|gb|EFG17373.1| DNA-binding protein [Bacteroides vulgatus PC510]
 gi|317384845|gb|EFV65801.1| transcriptional regulator [Bacteroides sp. 3_1_40A]
          Length = 191

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+  +++  E+  R+G A+  I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRL 62


>gi|170721568|ref|YP_001749256.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169759571|gb|ACA72887.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 181

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R+   L+Q+E+  R+G   S IS++E  + + ++ ++  L   +   L +  
Sbjct: 4  GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMTLAEFF 62


>gi|126700569|ref|YP_001089466.1| putative phage repressor [Clostridium difficile 630]
 gi|209901281|ref|YP_002290920.1| putative phage repressor [Clostridium phage phiCD27]
 gi|115252006|emb|CAJ69842.1| Transcriptional regulator, HTH-type [Clostridium difficile]
 gi|199612162|gb|ACH91335.1| putative phage repressor [Clostridium phage phiCD27]
          Length = 151

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPL 77
          N  +N R E  ++ +++ N+TG ++S +   ETG    I +D + ILAH LD   
Sbjct: 14 NRIKNKRLELNMSYQDLANKTGLSKSTLQRYETGAIKNIPLDKLEILAHALDESP 68


>gi|66395466|ref|YP_239823.1| ORF016 [Staphylococcus phage 2638A]
 gi|62635893|gb|AAX91004.1| ORF016 [Staphylococcus phage 2638A]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F  N + +RK+  + Q ++  + G  + S ISE E GK T  +  +  LA   +  +  
Sbjct: 1  MFSKNLKYLRKKYDMEQIDLAKKLGRKSASSISEWEKGKYTPKMKTLSELARLFNVSIND 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|299536569|ref|ZP_07049881.1| hypothetical protein BFZC1_11132 [Lysinibacillus fusiformis ZC1]
 gi|298728053|gb|EFI68616.1| hypothetical protein BFZC1_11132 [Lysinibacillus fusiformis ZC1]
          Length = 68

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N  R +RK  K+TQ+E+  + G ++  I  +E+GK   +++    ++   +
Sbjct: 3  NRIRELRKLKKITQEELSKQVGVSRQSIIAIESGKFNPSLELAYNISKAFN 53


>gi|261219534|ref|ZP_05933815.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261322029|ref|ZP_05961226.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260924623|gb|EEX91191.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294719|gb|EEX98215.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 472

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|261214180|ref|ZP_05928461.1| conserved hypothetical protein [Brucella abortus bv. 3 str.
          Tulya]
 gi|261314092|ref|ZP_05953289.1| conserved hypothetical protein [Brucella pinnipedialis
          M163/99/10]
 gi|261317820|ref|ZP_05957017.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261752493|ref|ZP_05996202.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261755152|ref|ZP_05998861.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|265988850|ref|ZP_06101407.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|260915787|gb|EEX82648.1| conserved hypothetical protein [Brucella abortus bv. 3 str.
          Tulya]
 gi|261297043|gb|EEY00540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261303118|gb|EEY06615.1| conserved hypothetical protein [Brucella pinnipedialis
          M163/99/10]
 gi|261742246|gb|EEY30172.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261744905|gb|EEY32831.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|264661047|gb|EEZ31308.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
          Length = 472

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 346

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RK+  LTQ+E+  R G     +++ E G S  +I  +  +A  LD  L  L 
Sbjct: 4  GEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHSHPDILLLAPIARLLDISLDTLF 62


>gi|251779221|ref|ZP_04822141.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083536|gb|EES49426.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 94

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +       +RK+  L Q++I      ++S     E+G +  ++  +I LA   +  L
Sbjct: 1  MLGERLAELRKDKGLKQEDIGKILRISRSTYGNYESGYAEPSVSILIDLAKFYNVSL 57


>gi|206580811|ref|YP_002238246.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|290509290|ref|ZP_06548661.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55]
 gi|206569869|gb|ACI11645.1| DNA-binding protein [Klebsiella pneumoniae 342]
 gi|289778684|gb|EFD86681.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55]
          Length = 189

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 VP 68


>gi|254392664|ref|ZP_05007839.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294815277|ref|ZP_06773920.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197706326|gb|EDY52138.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327876|gb|EFG09519.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 275

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           A    R +F    R  R++A LTQ+ +  +   ++S +S +E  +
Sbjct: 8  KAAPSARQLFGTKLRRYREDAGLTQEALGLKVQISKSHLSRIENAE 53


>gi|189349090|ref|YP_001944718.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189333112|dbj|BAG42182.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 276

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+EAK T  E+      +  ++S++E   + I+I +++ +A  L+ PL  L+
Sbjct: 4  GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 62


>gi|158425156|ref|YP_001526448.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
          571]
 gi|158332045|dbj|BAF89530.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
          571]
          Length = 192

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+    +  ++  R+  +++ IS++E G+++   + +  LA      L  + 
Sbjct: 8  LARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGLTLASIF 67


>gi|126731939|ref|ZP_01747742.1| putative DNA-binding protein [Sagittula stellata E-37]
 gi|126707471|gb|EBA06534.1| putative DNA-binding protein [Sagittula stellata E-37]
          Length = 162

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 27/49 (55%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +T  ++  R+G +++ +S +E  +++   + +  LA     P+ +L+ P
Sbjct: 1  MTLNDLEARSGVSRATLSRIEKAEASPTAETLGKLATAFAVPISRLIAP 49


>gi|86750866|ref|YP_487362.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          HaA2]
 gi|86573894|gb|ABD08451.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          HaA2]
          Length = 273

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  R  R+   L+Q ++      +   +S +ETG++  + D ++ LA  LD PL +
Sbjct: 20 GDYLRQWRQRRHLSQLDLALDAEISARHLSFVETGRAAPSRDMVMRLAERLDVPLRE 76


>gi|86159419|ref|YP_466204.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85775930|gb|ABC82767.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 477

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +R++  LTQ ++ +R G + S+++ +E  +  +    +I LA   +  L  L
Sbjct: 8  LGAKVRALRRQRNLTQAQLADRLGISASYLNLIEHHRRPLPAQLLIKLADLFELDLKSL 66


>gi|194337693|ref|YP_002019487.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
 gi|194310170|gb|ACF44870.1| transcriptional regulator, XRE family [Pelodictyon
          phaeoclathratiforme BU-1]
          Length = 134

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 4  RKRDEPHLSDAI-LRERM-IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          RK             ER   F      I K + +TQ+++  + G  +S+IS +  G +  
Sbjct: 6  RKAAAAVSPTTRRFVERQGAFAVRVTEIMKVSGITQRQLAEKLGKNESYISRIVAGWANP 65

Query: 62 NIDNMIILAHTLDTPLWKL 80
           +  ++     L   + ++
Sbjct: 66 TLKTIVEFEVALGQNVIEI 84


>gi|327460652|gb|EGF06987.1| putative transcriptional regulator [Streptococcus sanguinis SK1]
          Length = 116

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMTPEEFF 70


>gi|325266057|ref|ZP_08132743.1| XRE family transcriptional regulator [Kingella denitrificans ATCC
          33394]
 gi|324982695|gb|EGC18321.1| XRE family transcriptional regulator [Kingella denitrificans ATCC
          33394]
          Length = 102

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  RK+ +L+Q+ + +    ++  ++ +E       +   I LA  LDT L  L 
Sbjct: 35 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKALDTDLNALF 92


>gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
 gi|314942330|ref|ZP_07849178.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|314951464|ref|ZP_07854514.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|314993125|ref|ZP_07858511.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|314996008|ref|ZP_07861086.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313589762|gb|EFR68607.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313592365|gb|EFR71210.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|313596421|gb|EFR75266.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|313598947|gb|EFR77792.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|313642303|gb|EFS06883.1| helix-turn-helix protein [Enterococcus faecium TX0133a04]
          Length = 95

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N    RKE  L+Q E+  +    Q  +S  +TG++      M +L+  L  P+ +L 
Sbjct: 29 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 86


>gi|317057144|ref|YP_004105611.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449413|gb|ADU22977.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 258

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +R E  L+Q ++    G +++  + +E GK+TI    + +LA   D P+  ++
Sbjct: 12 EKIVALRTERGLSQNQLAEALGASRTHYNGIEHGKATITNSYINMLAEFYDVPVEDIV 69


>gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S]
 gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
 gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S]
 gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707]
          Length = 469

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 23/57 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       R +R E  L+Q  +      + S+++++E     + +  ++ ++     
Sbjct: 3  KTFVGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGV 59


>gi|291537213|emb|CBL10325.1| Helix-turn-helix [Roseburia intestinalis M50/1]
          Length = 177

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            N +  R    L Q E+ +         S++E G    ++D ++ +   L      LL+
Sbjct: 12 AQNLKEYRISHNLKQTEMADLLKMNYQNYSKMERGVYQPSLDKLLEICDILMLTPNDLLQ 71


>gi|260891949|ref|YP_003238046.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260864090|gb|ACX51196.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 144

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             + +R+   LT KE+  R G + +++  LE G+   +     +LA   + P  +L  P
Sbjct: 76  KLQALRRSYGLTLKELSRRVGISATFLGLLERGEKRASPATRELLAQHFNVPEHELFDP 134


>gi|260566283|ref|ZP_05836753.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4
          str. 40]
 gi|260155801|gb|EEW90881.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4
          str. 40]
          Length = 472

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|192360811|ref|YP_001984256.1| Helix-turn-helix domain-containing protein [Cellvibrio japonicus
          Ueda107]
 gi|190686976|gb|ACE84654.1| Helix-turn-helix domain protein [Cellvibrio japonicus Ueda107]
          Length = 152

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R +R +   +Q+++   TG +   I  +E G S   ++ +  LA   +   
Sbjct: 3  VRKLRLQRGWSQEQLAELTGLSIRTIQRIERG-SKPGLETIKSLASVFEVDP 53


>gi|257894935|ref|ZP_05674588.1| phage CI repressor [Enterococcus faecium 1,231,408]
 gi|294620540|ref|ZP_06699842.1| Transcriptional regulator, xre family [Enterococcus faecium
          U0317]
 gi|121309458|dbj|BAF44068.1| hypothetical protein [Enterococcus faecium]
 gi|257831314|gb|EEV57921.1| phage CI repressor [Enterococcus faecium 1,231,408]
 gi|291599794|gb|EFF30797.1| Transcriptional regulator, xre family [Enterococcus faecium
          U0317]
          Length = 105

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R E +LTQ+++      ++  IS  E G++  + +N+I  A   D  L  +L
Sbjct: 7  IKQKRIEKQLTQEDLAEMLLVSKKTISNWENGRTIPDTENLIQFAKLFDLSLDNIL 62


>gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125]
 gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125]
          Length = 107

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    R +RK+  LT KE+  +   A+S IS  E G    ++D ++ +A   ++    L
Sbjct: 1  MFPERLRYLRKKHGLTMKELGKKINVAESTISGYENGNRKPDMDTLVKMAEYFNSSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|327394419|dbj|BAK11841.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis
          AJ13355]
          Length = 153

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 21/59 (35%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR+   L+Q+ +    G   S IS +E  K +  +  +  L       L +  
Sbjct: 9  GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFF 67


>gi|307328736|ref|ZP_07607908.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306885685|gb|EFN16699.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 204

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           S  +            ++R+E   +  E+  RTG ++S +S LE G+ +     +  L 
Sbjct: 16 DSGIVEPLEARLATRLGDLRRERGWSLDELARRTGISRSTLSRLERGEISPTAALLNTLC 75

Query: 71 HTLDTPLWKLL 81
             +  + +LL
Sbjct: 76 AAYERTMSRLL 86


>gi|300115054|ref|YP_003761629.1| XRE family transcriptional regulator [Nitrosococcus watsonii
          C-113]
 gi|299540991|gb|ADJ29308.1| transcriptional regulator, XRE family [Nitrosococcus watsonii
          C-113]
          Length = 84

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R IR+  +++Q E+    G  QS IS +E  +  + ++    LA  L      L+
Sbjct: 15 VGESVRIIRELQEMSQNELAKLAGIPQSTISAIENDRVNLGVERAKQLALALKCHPAVLV 74

Query: 82 KP 83
           P
Sbjct: 75 FP 76


>gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
 gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM
          2522]
          Length = 207

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +N  N RK   L+Q+ + ++ G ++  +S+ E   S  +  N+I +A   +  + +
Sbjct: 1  MSLGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSKPSTQNLIKMATLFECDIKE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|261222350|ref|ZP_05936631.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|265998315|ref|ZP_06110872.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|260920934|gb|EEX87587.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|262552783|gb|EEZ08773.1| conserved hypothetical protein [Brucella ceti M490/95/1]
          Length = 472

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|269795030|ref|YP_003314485.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269097215|gb|ACZ21651.1| predicted transcriptional regulator [Sanguibacter keddieii DSM
          10542]
          Length = 242

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D             R  R     T  E+   +G + S++S+LE G++  ++ ++ ++A  
Sbjct: 15 DPEQSADRRLGTVVRARRHALGRTLVEVAGSSGLSHSFLSQLERGRARPSMRSLYLIAQA 74

Query: 73 LDTPLWKLL 81
          L T    LL
Sbjct: 75 LGTTQQALL 83


>gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyces sp. AA4]
 gi|302433807|gb|EFL05623.1| DNA-binding protein [Streptomyces sp. AA4]
          Length = 474

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 5/58 (8%), Positives = 25/58 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++       R++R+   ++Q ++      + S+++++E     + +  ++ +      
Sbjct: 2  DKTFAGARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGV 59


>gi|256159923|ref|ZP_05457641.1| hypothetical protein BcetM4_13064 [Brucella ceti M490/95/1]
 gi|256255153|ref|ZP_05460689.1| hypothetical protein BcetB_12846 [Brucella ceti B1/94]
          Length = 470

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides
          ATCC 33313]
 gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides
          ATCC 33313]
          Length = 171

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK   LTQ ++ ++ G +Q  +S LE   +  ++++M+ +A      L  L+
Sbjct: 3  NKIKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGN--SLEDMLPIAQYFGVSLDYLV 58


>gi|227530294|ref|ZP_03960343.1| XRE family transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
 gi|227349771|gb|EEJ40062.1| XRE family transcriptional regulator [Lactobacillus vaginalis
          ATCC 49540]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R+E  LTQ E+  +    +  +S  E  K+  +++ ++ +++     L  LL
Sbjct: 3  FGEQIKERRQELDLTQAEVAEKYFVTRQAVSNWEHDKTYPDLNMLVKISNVYQISLDSLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
 gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis
          ATCC 27305]
          Length = 212

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M      +  RK+  LTQK++ +    ++  IS  E G+   +I ++  L+      
Sbjct: 6  MSISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFGIS 62


>gi|187933142|ref|YP_001884801.1| AraC family transcriptional regulator [Clostridium botulinum B
          str. Eklund 17B]
 gi|187721295|gb|ACD22516.1| transcriptional regulator, AraC family [Clostridium botulinum B
          str. Eklund 17B]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
          +  R+   LT  ++  ++G A  +I+ELE GK    ++  +  L+  L+     L+
Sbjct: 8  KEFRELKNLTVSKLSYKSGVAIGYITELENGKYKNPSLQIICKLSKALNITPNDLI 63


>gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702]
 gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702]
 gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum
          V10Sc8a]
          Length = 122

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK    +Q ++    G  +   S  ETGK       ++ +A    T    LL
Sbjct: 12 FSERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLL 71


>gi|163789807|ref|ZP_02184244.1| possible transcriptional regulator [Carnobacterium sp. AT7]
 gi|159875029|gb|EDP69096.1| possible transcriptional regulator [Carnobacterium sp. AT7]
          Length = 104

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R   K+TQ+E+  +   ++  IS  E G++  +I+++I+++      L KL+K
Sbjct: 6  RLKQRRNTLKMTQEEVAEKIHVSRQTISNWENGRNLPDINSLILISEIYAISLDKLMK 63


>gi|225156053|ref|ZP_03724535.1| putative transcriptional regulator, XRE family [Opitutaceae
          bacterium TAV2]
 gi|224803150|gb|EEG21391.1| putative transcriptional regulator, XRE family [Opitutaceae
          bacterium TAV2]
          Length = 94

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
           N + +R++  LTQ+E     GF   +  E+E+G K  + ++ +  LA         L+
Sbjct: 9  ENLKLLRQQHGLTQEEFAAIAGFNYKYYQEIESGRKKQVLLETVDRLADAYTIKPSALI 67


>gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum
          STM815]
 gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum
          STM815]
          Length = 189

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +   +  ++G +++ + ++E G+S+     +  LA      +  LL
Sbjct: 13 GARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGESSPTASLLAKLAGAFGMSMSALL 71


>gi|145595917|ref|YP_001160214.1| cupin 2 domain-containing protein [Salinispora tropica CNB-440]
 gi|145305254|gb|ABP55836.1| Cupin 2, conserved barrel domain protein [Salinispora tropica
          CNB-440]
          Length = 215

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   T  ++  +TG + S +S LE+G     ++ ++ LA      L +L+
Sbjct: 31 VGPRLRALRHKRATTLTDLSAQTGISVSTLSRLESGTRRPTLELLLPLARAHGVTLDELV 90


>gi|87119866|ref|ZP_01075762.1| hypothetical protein MED121_01460 [Marinomonas sp. MED121]
 gi|86164568|gb|EAQ65837.1| hypothetical protein MED121_01460 [Marinomonas sp. MED121]
          Length = 228

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII---LAHTLDT 75
          +  F    + IRK     Q+ +  + G ++  +S  E G+ + +++       +   L+ 
Sbjct: 9  KSSFGVKLKEIRKLGGWNQEVLAAQLGISRDTLSRYERGELSPSLEVFGKMMSIFSALEI 68

Query: 76 PLWKLL 81
              +L
Sbjct: 69 TAEDML 74


>gi|324324347|gb|ADY19607.1| prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    + +RK   L Q+++ +    ++S I+  E G S  ++  +  LA   +  L  
Sbjct: 2  KTFSETLKTLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDV 61

Query: 80 L 80
          L
Sbjct: 62 L 62


>gi|300723769|ref|YP_003713076.1| putative Cryptic phage CTXphi transcriptional repressor rstR
          [Xenorhabdus nematophila ATCC 19061]
 gi|300723780|ref|YP_003713087.1| putative Cryptic phage CTXphi transcriptional repressor rstR
          [Xenorhabdus nematophila ATCC 19061]
 gi|297630293|emb|CBJ90947.1| putative Cryptic phage CTXphi transcriptional repressor rstR
          [Xenorhabdus nematophila ATCC 19061]
 gi|297630304|emb|CBJ90958.1| putative Cryptic phage CTXphi transcriptional repressor rstR
          [Xenorhabdus nematophila ATCC 19061]
          Length = 123

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +     RKE   TQ+++ ++ G   S     E G S   ID    +A  L+     
Sbjct: 11 MSFSDKLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADM 70

Query: 80 LL 81
          LL
Sbjct: 71 LL 72


>gi|289643382|ref|ZP_06475503.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289506780|gb|EFD27758.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 407

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLD 74
          + E           RK   L+Q  +    G ++SW+S++E G   ++ +  +  +A  L+
Sbjct: 1  MTEPSTVGERLAFHRKRRGLSQVALGKLIGRSESWVSQVERGTRMVDRLSVLAQVADALN 60

Query: 75 TPLWKL 80
           P+ +L
Sbjct: 61 IPVSEL 66


>gi|260592611|ref|ZP_05858069.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella veroralis F0319]
 gi|260535381|gb|EEX17998.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella veroralis F0319]
          Length = 110

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R  R    LTQ E+  + G  ++ I  LE+G+S I +  M  +   L  
Sbjct: 42 GEAIRKARLSQNLTQDELGKKIGVQRAQICRLESGRSVITLPIMSRVFQALGI 94


>gi|260168886|ref|ZP_05755697.1| transcriptional regulator, Cro/CI family protein [Brucella sp.
          F5/99]
          Length = 470

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|226948717|ref|YP_002803808.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841592|gb|ACO84258.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 120

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N RK+ ++TQ++     G  +  +S LE G    +ID    L+     P+ +L+
Sbjct: 7  LKNDRKQKEMTQEQYAELVGITRGTLSHLERG-REPSIDTSKKLSKYFKKPISELI 61


>gi|269214077|ref|ZP_05983549.2| DNA-binding protein [Neisseria cinerea ATCC 14685]
 gi|269144591|gb|EEZ71009.1| DNA-binding protein [Neisseria cinerea ATCC 14685]
          Length = 157

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 37 EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 95


>gi|225627656|ref|ZP_03785693.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|261758376|ref|ZP_06002085.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99]
 gi|225617661|gb|EEH14706.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|261738360|gb|EEY26356.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99]
          Length = 472

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 5  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 63


>gi|254465017|ref|ZP_05078428.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
 gi|206685925|gb|EDZ46407.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          Y4I]
          Length = 462

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 31/64 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R+  +LTQK+   + G +  +++++E     ++   ++ LA      
Sbjct: 3  TQKLYAGAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|154496243|ref|ZP_02034939.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC
          29799]
 gi|150274326|gb|EDN01403.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC
          29799]
          Length = 67

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RKE ++TQ+E+    G  +  I  LE G+   ++     LA      + +L 
Sbjct: 3  NRIAQLRKEGRITQEELAEAVGVTRQTIISLENGRYNASLLLAHKLAQYFHLTIEELF 60


>gi|126739320|ref|ZP_01755013.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126719420|gb|EBA16129.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F N  +  RK  +L+Q ++      +   IS LETG+S  + + ++ L+  L  PL
Sbjct: 5  FGNTLKEWRKLRRLSQLDLALSAQVSARHISFLETGRSRPSREMVLRLSEELQVPL 60


>gi|68248909|ref|YP_248021.1| hypothetical protein NTHI0420 [Haemophilus influenzae 86-028NP]
 gi|68057108|gb|AAX87361.1| hypothetical protein NTHI0420 [Haemophilus influenzae 86-028NP]
          Length = 144

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          RM      R +R+    +Q+E+  R   + +  +++E G++ +++D +  +A  LD  + 
Sbjct: 4  RMNVHEKIRKLRETKHWSQEEMAERMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDIV 63

Query: 79 KLL 81
          +L+
Sbjct: 64 ELI 66


>gi|332654591|ref|ZP_08420334.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
 gi|332516555|gb|EGJ46161.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ruminococcaceae bacterium D16]
          Length = 237

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 22/60 (36%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R+E  ++Q+      G +Q+ +S  E G     +  ++            LL
Sbjct: 8  FARTLSLLRQEKGVSQRAAAAELGISQALMSHYENGIREPGLSFVVKACDYYGVSADYLL 67


>gi|323359528|ref|YP_004225924.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275899|dbj|BAJ76044.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 183

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           L+  E+  R G A++ +S+LE+G    +++ +  LA  L+ P   L+
Sbjct: 20 DLSVSELARRAGVAKATVSQLESGGGNPSVETLWALATALEIPFAILV 67


>gi|323174633|gb|EFZ60254.1| repressor protein C2 [Escherichia coli LT-68]
          Length = 240

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDT 75
          R+         N R++A LTQ  +  + G  +  IS+ E G   + N D +  +A  L  
Sbjct: 21 RKMKSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQC 80

Query: 76 PL 77
            
Sbjct: 81 SP 82


>gi|315033824|gb|EFT45756.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0017]
          Length = 109

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F N  + +RK    LTQ+++ N  G A++  +  E GK T +++    +A      L  
Sbjct: 1  MFANRLKQLRKSKPHLTQQDMANILGVAKTTYASYEQGKRTPDVEIQNKIADYFGVTLDY 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
 gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium hathewayi DSM 13479]
          Length = 147

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
              R +R++ ++TQ E+  + G  +  + + E G  + I  D +I+LA  L T    L+
Sbjct: 4  GERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPSSLM 63


>gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586]
 gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586]
          Length = 237

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          R       R +RKE KLTQ+++ +  G + + +   E  ++T    N+I L   L   PL
Sbjct: 3  RETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPL 62

Query: 78 W 78
          W
Sbjct: 63 W 63


>gi|260220496|emb|CBA28091.1| hypothetical protein Csp_A05550 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 110

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R IRK   ++Q++    +  +++++S LE    +  +  +  LA  L      LL
Sbjct: 6  LAKSLRTIRKSKGISQEDFGLIS--SRTYVSSLERKLKSPTLSKVDELAAVLGVHPLTLL 63


>gi|326203199|ref|ZP_08193064.1| transcriptional regulator, XRE family [Clostridium papyrosolvens
          DSM 2782]
 gi|325986457|gb|EGD47288.1| transcriptional regulator, XRE family [Clostridium papyrosolvens
          DSM 2782]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK+  ++Q+E+      ++  I  LE G+   +I     +A      + ++ 
Sbjct: 3  NRLEQIRKQRGISQEELARVLEVSRQTIGSLENGRYNPSIILAFKIAIYFKMNIEEIF 60


>gi|238796433|ref|ZP_04639941.1| DNA-binding phage-related protein [Yersinia mollaretii ATCC
          43969]
 gi|238719638|gb|EEQ11446.1| DNA-binding phage-related protein [Yersinia mollaretii ATCC
          43969]
          Length = 84

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R++  LTQ+E+ +R G  +  IS +E G  + N+  +   A  L 
Sbjct: 11 RQAMMTELKAARQQCNLTQEEVAHRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 66


>gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
 gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          pulsiensis BGSC 4CC1]
          Length = 142

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 1  MIGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4]
 gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4]
          Length = 218

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M    N + +R +  L+QKE+    G +   +S  E G     +  +  +A     
Sbjct: 1  MSIGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIADHFGI 56


>gi|168182462|ref|ZP_02617126.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|237794872|ref|YP_002862424.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657]
 gi|182674430|gb|EDT86391.1| putative DNA-binding protein [Clostridium botulinum Bf]
 gi|229260963|gb|ACQ51996.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657]
          Length = 370

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  + ++A   +  +
Sbjct: 2  EKLLIGKVIYRLRKEKAITQEQLANFIGVSTAAVSKWESGTSYPDITLLSVIATFFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|153939048|ref|YP_001391690.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152934944|gb|ABS40442.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295319719|gb|ADG00097.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          I   N + IR E  L+  ++        + ISE+E GK  ++N   +  +A+ L+    +
Sbjct: 4  ILGQNIKKIRTEKGLSAYKLSKLARVGTTTISEIENGKRQSLNSTTIEKIANALNISTDR 63

Query: 80 LL 81
          L+
Sbjct: 64 LM 65


>gi|90419013|ref|ZP_01226924.1| possible helix-turn-helix protein [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90337093|gb|EAS50798.1| possible helix-turn-helix protein [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 137

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLL 81
             R +RK  K+T + +   +G ++S+I E+E   ++  + + +  +A  LDT +  L+
Sbjct: 38 ERVRRLRKAKKMTLEALAEASGSSRSYIWEIENRPETKPSAEKLARIAEALDTTVEFLM 96


>gi|9635701|ref|NP_061614.1| hypothetical protein phiPV83p25 [Staphylococcus prophage phiPV83]
 gi|162290131|ref|YP_001604114.1| putative transcriptional regulator [Staphylococcus phage phiMR11]
 gi|8918771|dbj|BAA97831.1| unnamed protein product [Staphylococcus prophage phiPV83]
 gi|161958561|dbj|BAF95116.1| putative transcriptional regulator [Staphylococcus phage phiMR11]
 gi|298693614|gb|ADI96836.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus
          subsp. aureus ED133]
          Length = 85

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
           +F  N R I     ++ +++ N TG ++S IS  + GK+  +N++ +  LA  L   + 
Sbjct: 5  EVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVS 64

Query: 79 KLLK 82
          +L  
Sbjct: 65 ELFT 68


>gi|78188068|ref|YP_378406.1| XRE family transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170267|gb|ABB27363.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii
           CaD3]
          Length = 109

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKLLK 82
                 R++A +TQ+ +  + G  +S +S LE+ GK   ++  +   A  +   L   L 
Sbjct: 43  RELLLARQQAGMTQEAVAEKIGTTKSAVSRLESAGKHVPSLSTLRKYAEAVGCELEIKLT 102

Query: 83  P 83
           P
Sbjct: 103 P 103


>gi|57651276|ref|YP_185241.1| hypothetical protein SACOL0349 [Staphylococcus aureus subsp.
          aureus COL]
 gi|66395939|ref|YP_240285.1| ORF061 [Staphylococcus phage 96]
 gi|296277349|ref|ZP_06859856.1| hypothetical protein SauraMR_13427 [Staphylococcus aureus subsp.
          aureus MR1]
 gi|297590097|ref|ZP_06948737.1| helix-turn-helix DNA binding protein [Staphylococcus aureus
          subsp. aureus MN8]
 gi|57285462|gb|AAW37556.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus COL]
 gi|62636360|gb|AAX91471.1| ORF061 [Staphylococcus phage 96]
 gi|297577225|gb|EFH95939.1| helix-turn-helix DNA binding protein [Staphylococcus aureus
          subsp. aureus MN8]
 gi|315193377|gb|EFU23774.1| hypothetical protein CGSSa00_04586 [Staphylococcus aureus subsp.
          aureus CGS00]
          Length = 85

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
           +F  N R I     ++ +++ N TG ++S IS  + GK+  +N++ +  LA  L   + 
Sbjct: 5  EVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVS 64

Query: 79 KLLK 82
          +L  
Sbjct: 65 ELFT 68


>gi|29028583|ref|NP_803273.1| HTH DNA binding protein [Staphylococcus phage 11]
 gi|66395559|ref|YP_239915.1| ORF058 [Staphylococcus phage 42E]
 gi|88195746|ref|YP_500555.1| helix-turn-helix DNA binding protein [Staphylococcus aureus
          subsp. aureus NCTC 8325]
 gi|18920507|gb|AAL82248.1| HTH DNA binding protein [Staphylococcus phage 11]
 gi|62636052|gb|AAX91163.1| ORF058 [Staphylococcus phage 42E]
 gi|87203304|gb|ABD31114.1| helix-turn-helix DNA binding protein [Staphylococcus aureus
          subsp. aureus NCTC 8325]
 gi|329728903|gb|EGG65323.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21189]
          Length = 89

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
           +F  N R I     ++ +++ N TG ++S IS  + GK+  +N++ +  LA  L   + 
Sbjct: 5  EVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVS 64

Query: 79 KLLK 82
          +L  
Sbjct: 65 ELFT 68


>gi|218767191|ref|YP_002341703.1| hypothetical protein NMA0153 [Neisseria meningitidis Z2491]
 gi|121051199|emb|CAM07470.1| hypothetical protein NMA0153 [Neisseria meningitidis Z2491]
 gi|319411396|emb|CBY91807.1| putative DNA-binding protein [Neisseria meningitidis WUE 2594]
          Length = 126

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)]
 gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341]
 gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385]
 gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)]
 gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341]
 gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385]
          Length = 237

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          R       R +RKE KLTQ+++ +  G + + +   E  ++T    N+I L   L   PL
Sbjct: 3  RETIGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPL 62

Query: 78 W 78
          W
Sbjct: 63 W 63


>gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
 gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM
          8271]
          Length = 80

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK   +TQK++       +S I+++E G S  ++  +  +A  L   + +LL
Sbjct: 5  GIQIKALRKSLNMTQKQLAELVKLDESMINKIENGHSVGSVQTLSKIAAALKVSITELL 63


>gi|322374209|ref|ZP_08048742.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150]
 gi|321276914|gb|EFX53986.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C150]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 29/57 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N + +R+   +TQ+++ ++ G  +  I  LE  +   +++  + +A   +  + +L 
Sbjct: 10 NLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEELF 66


>gi|300857320|ref|YP_003782304.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300437435|gb|ADK17202.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 222

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 29/56 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R E  ++QK++  + G ++ +I+E E+GK  +N + +  L+  L   +
Sbjct: 4  VGQKIKLARTEMGISQKQLAKKLGVSEKFINEAESGKRIVNQNIIDKLSKILGKSI 59


>gi|291087366|ref|ZP_06346240.2| putative transcriptional regulator SinR [Clostridium sp. M62/1]
 gi|291075503|gb|EFE12867.1| putative transcriptional regulator SinR [Clostridium sp. M62/1]
          Length = 140

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          F+  R +AK TQ E+  + G    ++  LE  +   ++D ++ L   L+ P   +L P
Sbjct: 41 FKKYRLDAKRTQDEVAEKVGITTRFLMALENEEKRPSLDILLRLVDVLNIPGDAILHP 98


>gi|166032548|ref|ZP_02235377.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC
          27755]
 gi|166026905|gb|EDR45662.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC
          27755]
          Length = 150

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R+E  LTQ+++ ++   ++  +   E G    ++     LA  LD  + +L+
Sbjct: 6  NIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDELI 62


>gi|254241644|ref|ZP_04934966.1| hypothetical protein PA2G_02348 [Pseudomonas aeruginosa 2192]
 gi|126195022|gb|EAZ59085.1| hypothetical protein PA2G_02348 [Pseudomonas aeruginosa 2192]
          Length = 96

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + +RK   L+Q+   + +  +++++S LE    +  +  +  L   +D   
Sbjct: 3  AKYSLAKALKTVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLHKLTELCEVMDVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|260906742|ref|ZP_05915064.1| transcriptional regulator, XRE family protein [Brevibacterium
          linens BL2]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N +++RK A LTQ ++  RTG ++  I   E G    ++   + +A +L+T + ++ 
Sbjct: 6  SNLKHVRKAAGLTQAQLAQRTGVSRQTIIATERGDYAPSVYLALRIARSLETTVEEIF 63


>gi|91785146|ref|YP_560352.1| XRE family transcriptional regulator [Burkholderia xenovorans
          LB400]
 gi|91689100|gb|ABE32300.1| transcriptional regulator, XRE family [Burkholderia xenovorans
          LB400]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 34/76 (44%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P  ++       +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +
Sbjct: 17 ASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVL 76

Query: 67 IILAHTLDTPLWKLLK 82
            +A  L   +   L+
Sbjct: 77 CKVAAALKVSVAAFLR 92


>gi|77463742|ref|YP_353246.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1]
 gi|77388160|gb|ABA79345.1| Predicted transcriptional regulators [Rhodobacter sphaeroides
          2.4.1]
          Length = 428

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  +  R  R +  L Q ++    G + S+++ +E  +  I  + +  LA  L  
Sbjct: 1  MPMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60

Query: 76 PLWKLL 81
              LL
Sbjct: 61 EAQTLL 66


>gi|17547329|ref|NP_520731.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
 gi|17429632|emb|CAD16317.1| putative transcription regulator protein [Ralstonia solanacearum
          GMI1000]
          Length = 96

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + +RK   L+Q+   + +  +++++S LE    +  +  +  L   +D   
Sbjct: 3  AKYSLAKALKTVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLHKLTELCEVMDVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|103487098|ref|YP_616659.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
          RB2256]
 gi|98977175|gb|ABF53326.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
          RB2256]
          Length = 71

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R     +Q E+ +R   ++  ++ +ETGK   ++     LA   D P+ ++ 
Sbjct: 3  NQLKVLRAMRNWSQAELADRLDVSRQAVNAIETGKYDPSLPLAFKLARLFDMPIEEIF 60


>gi|322411768|gb|EFY02676.1| Cro/CI family transcriptional regulator [Streptococcus
          dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 73

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQKE+     F  S  +++E G+  ++ + +I +++     +  LL
Sbjct: 3  QRIRDLREDNDLTQKEVATILSFTHSAYAKIERGERILSAEVLIKISNIYGVNIDYLL 60


>gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii
          subsp. bulgaricus ND02]
 gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus
          delbrueckii subsp. bulgaricus ND02]
          Length = 122

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ +     R++R+   ++Q+E+    G ++  IS  E G+    +  +  +A+     
Sbjct: 2  EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVS 60


>gi|289192276|ref|YP_003458217.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
           FS406-22]
 gi|288938726|gb|ADC69481.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
           FS406-22]
          Length = 317

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            I     + +R+   ++  ++    G ++  I + ET  +  ++D  I +   LD PL K
Sbjct: 124 KIDGKVLKEVREAMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVAIKIEEFLDVPLVK 183

Query: 80  ---LLKP 83
              L +P
Sbjct: 184 GIDLFEP 190


>gi|255526755|ref|ZP_05393656.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|255509533|gb|EET85872.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
          Length = 71

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++    N  +  R E  ++Q+++ N  G ++  IS +ETG+        +ILA  L    
Sbjct: 3  DKTNLNNRLKVARAELNISQQQLANMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|229605809|ref|YP_002876513.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae MJ-1236]
 gi|229372295|gb|ACQ62717.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae MJ-1236]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  R++R E  L Q+E+ N  G  ++     E G  +  ++ +  LA     P+ +L
Sbjct: 4  MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL 63

Query: 81 L 81
          +
Sbjct: 64 V 64


>gi|219670446|ref|YP_002460881.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219540706|gb|ACL22445.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 77

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          NN R  R    +T KE+  RTG    ++S+LE G      +  I ++  L  P
Sbjct: 5  NNLREWRLANGMTLKELARRTGLDYRYLSQLEKGLRKGTPNTWIKISKELQVP 57


>gi|196033516|ref|ZP_03100928.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W]
 gi|195993950|gb|EDX57906.1| helix-turn-helix Cro and cI family protein [Bacillus cereus W]
          Length = 115

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  R +R+E  LTQ ++    G     +S+ ETG    + + +   A  L  P+  LL
Sbjct: 3  FKDRLRQLRRERNLTQHDLGQAIGVTAGSVSKFETGFKPASRETVERAADFLGVPVDYLL 62


>gi|146302601|ref|YP_001197192.1| XRE family transcriptional regulator [Flavobacterium johnsoniae
          UW101]
 gi|146157019|gb|ABQ07873.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae
          UW101]
          Length = 133

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N   IR+   + Q  + +  G +Q  IS +ET + T++ D ++ +A  L  
Sbjct: 11 GRNISRIRELRGMKQGALADAIGTSQQTISSIETSE-TVDFDKLVEIAKALGV 62


>gi|85707435|ref|ZP_01038515.1| probable transcriptional regulator [Roseovarius sp. 217]
 gi|85668023|gb|EAQ22904.1| probable transcriptional regulator [Roseovarius sp. 217]
          Length = 373

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRT--GFAQSWISELETGKSTINIDNMIILAHTLD 74
          RER++F    R  RK A L+ + +  R     +   IS+ E  K   +   ++ L   L 
Sbjct: 11 RERIMFGQRLRLARKRAGLSMQALAERVTPSVSAQAISKYEADKMMPSSSVLVGLGKALG 70

Query: 75 TPLWKLL 81
            L  LL
Sbjct: 71 VSLDFLL 77


>gi|327537762|gb|EGF24467.1| transcription regulator [Rhodopirellula baltica WH47]
          Length = 347

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+   L+Q ++  R G +   +   E+G+  ++I  M  +A  L     +L++
Sbjct: 7  QLKQARQSLGLSQLQLAMRAGVSSRTVQFAESGQ-NVSIGTMRRIAGALGMQADQLVR 63


>gi|304395940|ref|ZP_07377822.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304356309|gb|EFM20674.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 82

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            N  + IR+    TQ E+  + G  Q+ IS  E    + ++  +  L   L+  L
Sbjct: 8  LANQLKFIRQRNGWTQSELAKKVGLKQATISHFENAPDSTSLATLFKLLQALEVSL 63


>gi|302671595|ref|YP_003831555.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396068|gb|ADL34973.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 370

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N +  RK   LTQ+E+    G     +S+ E+G +  +I  ++ LA      +  LL
Sbjct: 7  ENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLADFFSISVDVLL 64


>gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3]
          Length = 302

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RK++ +TQ+++ ++ G     +S+ E G S  + D +  +A   D  +  L
Sbjct: 4  VFSKQLQMLRKQSGITQEQLADKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNL 62


>gi|316933837|ref|YP_004108819.1| helix-turn-helix domain-containing protein [Rhodopseudomonas
          palustris DX-1]
 gi|315601551|gb|ADU44086.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1]
          Length = 152

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R  R EA L+Q++     G +   + + E+GK+ I+   + +LA     P+
Sbjct: 32 AARLRVARIEAGLSQEKTAEALGLSFQQVQKYESGKNRISPGKLAVLAALYGKPI 86


>gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621]
 gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621]
          Length = 166

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 25 VIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 84

Query: 81 L 81
          L
Sbjct: 85 L 85


>gi|225075479|ref|ZP_03718678.1| hypothetical protein NEIFLAOT_00484 [Neisseria flavescens
          NRL30031/H210]
 gi|313667416|ref|YP_004047700.1| hypothetical protein NLA_0600 [Neisseria lactamica ST-640]
 gi|224953198|gb|EEG34407.1| hypothetical protein NEIFLAOT_00484 [Neisseria flavescens
          NRL30031/H210]
 gi|313004878|emb|CBN86304.1| hypothetical protein NLA_0600 [Neisseria lactamica 020-06]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|251796863|ref|YP_003011594.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247544489|gb|ACT01508.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 68

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK+  + Q+E+      ++  I  LE G+   +I     +A      + ++ 
Sbjct: 3  NRLEEHRKQHGINQEELAAALEVSRQTIGSLENGRYNPSILLAFRIARFFGKSIEEVF 60


>gi|126740822|ref|ZP_01756507.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
 gi|126718118|gb|EBA14835.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6]
          Length = 186

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + IR  A ++       TG +++ + ++E G+S+  I  +  +A     PL  L++
Sbjct: 9  NLKEIRASAAVSLSRAAELTGVSKAMLGQIERGESSPTIATLWKIAKGFRIPLSALIE 66


>gi|159901692|ref|YP_001547938.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159894731|gb|ABX07810.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 804

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            F    ++ R    LTQ+ +  R G + S + +LET +   +   +  LA     
Sbjct: 2  ETFGRWLKHQRISHDLTQEALAERIGCSVSLLKKLETHQRRPSKQIITRLATIFKV 57


>gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea
          ananatis AJ13355]
          Length = 230

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
           N  R++RK   +  +E+    G   + IS LETGK  +    ++  +A  L   + +L 
Sbjct: 4  GNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVSELF 63


>gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK353]
          Length = 168

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|304394918|ref|ZP_07376802.1| transcriptional regulator, XRE family [Pantoea sp. aB]
 gi|304357171|gb|EFM21534.1| transcriptional regulator, XRE family [Pantoea sp. aB]
          Length = 200

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +  RK  KL+   + +R G ++  + E+E G +  +I  +  +A  L   +  ++
Sbjct: 22 VSESIKRWRKSQKLSLDALSHRAGISKGMLVEIEKGAANPSIAILCKVAAALGVSVADIV 81


>gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 117

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +RK + ++Q  +  + G     +   E G     ++ +I ++   D    
Sbjct: 5  RSYVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 64

Query: 79 KLL 81
          +LL
Sbjct: 65 ELL 67


>gi|302538345|ref|ZP_07290687.1| regulatory protein [Streptomyces sp. C]
 gi|302447240|gb|EFL19056.1| regulatory protein [Streptomyces sp. C]
          Length = 218

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+ A LT +    R   + + +S LETG+   ++  ++ LA T  T + +LL
Sbjct: 29 VAPQLRELRRRAGLTLEAAAARARLSPAHLSRLETGRRQPSLPLLLGLARTYGTTVSELL 88


>gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
 gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium
          LMG 3301]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 466

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 24/57 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       R +RKE  L+Q  +      + S+++++E     +++  ++ +      
Sbjct: 3  KTFVGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGV 59


>gi|163815718|ref|ZP_02207090.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC
          27759]
 gi|158449023|gb|EDP26018.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC
          27759]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          M   NN R IR++  + Q ++    GF+   +  +E G ST + + M+ ++   +
Sbjct: 1  MAVTNNIREIREQRGIYQDDLAAAIGFSTKTVGRIERGDSTPSAEFMLRISKYFN 55


>gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC
          49188]
 gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC
          49188]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii
          AK1]
 gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii
          AK1]
          Length = 179

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +     + + IRK   L+       TG +++ + ++E G+S+  I  +  ++  L+
Sbjct: 7  KSQIAAHLKQIRKHKGLSLDATAKLTGVSKAMLGQIERGESSPTISTLWKISSGLE 62


>gi|331270556|ref|YP_004397048.1| putative transcriptional regulator, lacI/xre family [Clostridium
          botulinum BKT015925]
 gi|329127106|gb|AEB77051.1| Predicted transcriptional regulator, lacI/xre family [Clostridium
          botulinum BKT015925]
          Length = 221

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  +  R ++ +T+K++  + G ++ +I E+E+GK  IN   M  ++  L   L
Sbjct: 5  GSKIKEARLKSNMTEKQLAKKIGVSEKFIKEVESGKKVINESVMGKISKVLGKDL 59


>gi|328955768|ref|YP_004373101.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
 gi|328456092|gb|AEB07286.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2]
          Length = 72

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +       +++RK    +TQ     +    +++ + +E G+       +  +A  L   L
Sbjct: 6  QKQLGARIKSLRKTRIGMTQDAFARKCAIDETYYAAIEQGRHNPTFLMLKKIASGLRVSL 65

Query: 78 WKLLK 82
           +LLK
Sbjct: 66 SELLK 70


>gi|325919915|ref|ZP_08181904.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325549624|gb|EGD20489.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 461

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +       R       + +R+   LTQ E+  R   + S+++++E  +  + +
Sbjct: 1  MPHTQPPLRHQLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRPLTL 53


>gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium
          ammoniagenes DSM 20306]
 gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium
          ammoniagenes DSM 20306]
          Length = 72

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          NN +  R +A L+Q+++ +  G ++  I  +E G+   ++     LA   +  +  L  P
Sbjct: 3  NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYDPSLPLAFQLAAKFECLIEDLFIP 62


>gi|291532702|emb|CBL05815.1| Helix-turn-helix [Megamonas hypermegale ART12/1]
          Length = 76

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLW 78
          +        RK  + TQ+E+  R   + S++S +E G     + I  ++ ++  LD  + 
Sbjct: 10 LIGARIAYFRKLKRYTQEELAFRASISTSYLSRIERGIYSKGVPISTLMQISKALDIDIK 69

Query: 79 KLLK 82
           L +
Sbjct: 70 LLFE 73


>gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
 gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
          Length = 211

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  RK+  LTQ  +  +    +  IS  E GKS  +++ ++ ++      +  LL
Sbjct: 3  FSTQIKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKSYPDLNTLVRISDFYQISIDSLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|254995332|ref|ZP_05277522.1| hypothetical protein AmarM_05275 [Anaplasma marginale str.
          Mississippi]
          Length = 187

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R    ++Q ++ +R G     + + E G + I I  +  LA  L   +  L+
Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89


>gi|239942469|ref|ZP_04694406.1| XRE family transcriptional regulator [Streptomyces roseosporus
          NRRL 15998]
 gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus
          NRRL 11379]
 gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
          Length = 486

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E  ++  +  R +R+E  + Q ++    G + S+ +++E G+  +    ++ +A     
Sbjct: 7  EHKVYAHSKLRRLRRERGMNQVDMARALGISASYANQIELGQRPLTASVLLQIAKVFGV 65


>gi|227328284|ref|ZP_03832308.1| hypothetical protein PcarcW_13540 [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
          Length = 88

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  R +A LTQ+++    G     A+S IS+ E+G      + M   A  L+ P
Sbjct: 5  RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP 60


>gi|300776559|ref|ZP_07086417.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300502069|gb|EFK33209.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 86

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 11 LSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           S  +LR  M+ F  N + IR     +  E+   + F  S  ++ E GK    I+ M+ +
Sbjct: 2  DSKEVLRLFMLEFSENLKKIRATKYNSMDEVAQNSNFDSSNYNKFENGKGNPTIETMLKM 61

Query: 70 AHTLDTPLWKLL 81
          +        +L 
Sbjct: 62 SSAFGITPKELF 73


>gi|197303443|ref|ZP_03168482.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC
          29176]
 gi|197297441|gb|EDY32002.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC
          29176]
          Length = 368

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R E K+TQ+E+ +  G +++ +S+ E+G S  +I  +  LA   +  + +L+
Sbjct: 7  AKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVSIDELI 65


>gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W]
 gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W]
          Length = 116

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK  K+TQ+++ N  G ++  IS  E GK +   +++  +A   +     L
Sbjct: 1  MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC
          27756]
 gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC
          27756]
 gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 95

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A+ +E      N R +R   +L Q ++  +   ++  +S  E G +  +I  +I +A   
Sbjct: 22 AMKKEENAVGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGITLPDIYLLIEIADFF 81

Query: 74 DTPLWKL 80
             L +L
Sbjct: 82 RISLDEL 88


>gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
          Length = 183

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF N  +  R++  LTQ E+ N+   +   IS  ETGK+  +I+N+I+++  L+  L  
Sbjct: 1  MIFHNLIKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISLDD 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|116695165|ref|YP_840741.1| XRE family transcriptional regulator [Ralstonia eutropha H16]
 gi|113529664|emb|CAJ96011.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R +   +Q  +    G +Q  IS LE+G++  + + ++ LA  L  PL +
Sbjct: 21 LRYWRSKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQ 74


>gi|86651824|gb|ABD14429.1| transcriptional regulator [Anaplasma centrale]
          Length = 187

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R    ++Q ++ +R G     + + E G + I I  +  LA  L   +  L+
Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89


>gi|254365396|ref|ZP_04981441.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|289553470|ref|ZP_06442680.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|308405959|ref|ZP_07494554.2| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|134150909|gb|EBA42954.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|289438102|gb|EFD20595.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|308364965|gb|EFP53816.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323718593|gb|EGB27757.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
          Length = 118

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 12 REVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLPLS 71

Query: 79 KLL 81
           +L
Sbjct: 72 VVL 74


>gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 74

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++N  R++R++   +Q++I +     Q   S+ E GK+ I +D+MI+LA   +  +
Sbjct: 3  YLNRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLAEFYNVDM 58


>gi|284041700|ref|YP_003392040.1| XRE family transcriptional regulator [Conexibacter woesei DSM
          14684]
 gi|283945921|gb|ADB48665.1| transcriptional regulator, XRE family [Conexibacter woesei DSM
          14684]
          Length = 274

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R+  +L+Q ++    G +   +S +ETG+S  + + ++ LA  LD PL 
Sbjct: 11 RSGVGPLLRGWRQRRRLSQLDLALEAGVSARHLSFVETGRSKPSSEMVLHLAEQLDVPLR 70

Query: 79 K 79
          +
Sbjct: 71 E 71


>gi|288935233|ref|YP_003439292.1| XRE family transcriptional regulator [Klebsiella variicola At-22]
 gi|288889942|gb|ADC58260.1| transcriptional regulator, XRE family [Klebsiella variicola
          At-22]
          Length = 189

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 7  LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 VP 68


>gi|300780988|ref|ZP_07090842.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030]
 gi|300532695|gb|EFK53756.1| transcriptional regulator [Corynebacterium genitalium ATCC 33030]
          Length = 120

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     + R  R +  +T +E+  +   +  ++SELE G+  ++ + +  +   LDT + 
Sbjct: 32 REALGMSLRAFRADKGVTLRELATQARVSPGYLSELERGRKEVSSELLASVCLALDTTVS 91

Query: 79 KLL 81
           LL
Sbjct: 92 DLL 94


>gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 157

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 16 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 75

Query: 81 L 81
          L
Sbjct: 76 L 76


>gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
 gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family
          [Roseburia intestinalis L1-82]
          Length = 111

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +++R +  L+Q+ + ++   +Q  I + E   +  NID +  +A   D  +  L+
Sbjct: 2  NRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLI 59


>gi|28871876|ref|NP_794495.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855129|gb|AAO58190.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 146

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F +  R +R+ + + Q +     G +QS IS LE G+S++ ++ +  +A  L+    
Sbjct: 3  RIAFASALRFVRRHSSVLQADFE--GGVSQSHISRLERGESSVTLERLEEIAAHLNVHPL 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLI 63


>gi|331085319|ref|ZP_08334405.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330408102|gb|EGG87592.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 150

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N +  R+E  LTQ+++ ++   ++  +   E G    ++     LA  LD  + +L+
Sbjct: 6  NIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDELI 62


>gi|325846459|ref|ZP_08169374.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325481217|gb|EGC84258.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE K+TQ+E+ +    ++  I  LE G+   +I     +A      +  + 
Sbjct: 3  NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60


>gi|319744842|gb|EFV97180.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813]
          Length = 72

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  + +R    + Q E+   TG ++  IS +E G+ T ++   + ++      L  
Sbjct: 4  LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKISQVFKESLEN 63

Query: 80 LL 81
          + 
Sbjct: 64 VF 65


>gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.]
          Length = 433

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                + IR +   +Q E+    G   S IS++E+ +   ++  +I +A TL  
Sbjct: 254 LGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQIYPSLPALIKIAETLSV 307


>gi|291448916|ref|ZP_06588306.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291351863|gb|EFE78767.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 277

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R+ R++ +++Q E+  R   +   IS +ETG+S  + D ++ LA  LD P+ +
Sbjct: 14 LRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEHLDVPVRE 67


>gi|261414728|ref|YP_003248411.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371184|gb|ACX73929.1| transcriptional regulator, XRE family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 130

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R     + + +R     TQ+++ ++ G  +  +S +E GK  I       LA+ L T  
Sbjct: 66  ARSTPAESLKLLRTTFGYTQQQLADKAGITKQQVSAMERGKEPIGRKMAHRLANALGTSY 125

Query: 78  WKLL 81
             L 
Sbjct: 126 KNLF 129


>gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
 gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +SD   +            R+   LTQ ++    G +   +S +E GKS  ++  ++ L+
Sbjct: 1  MSDKTEQLVQSIGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSVPSVLRLLELS 60

Query: 71 HTLDTPLWKLLK 82
                +  LL 
Sbjct: 61 EIFGCEVADLLT 72


>gi|238063738|ref|ZP_04608447.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237885549|gb|EEP74377.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 403

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80
                + R    +TQ++  +R G ++SW+ ++E G   +  + N+  +A  L   L  L
Sbjct: 17 VGRRVAHWRVRRNMTQQQFADRLGKSKSWVDKVERGVRRLERVSNLREVAEALRIDLEML 76

Query: 81 L 81
          L
Sbjct: 77 L 77


>gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 101

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R R +    + I  ER    +   ++RK   LTQ ++    G  Q  IS++E+GK+ ++
Sbjct: 17 QRARIDAIKQEMIDAER---GHELASLRKAQGLTQSQVAEAMGVTQGRISQIESGKTRLD 73

Query: 63 IDNMIILAHTLDTPL 77
           + M    H +   L
Sbjct: 74 TETMAAYLHAIGGEL 88


>gi|206973277|ref|ZP_03234199.1| conserved domain protein [Bacillus cereus AH1134]
 gi|206732161|gb|EDZ49361.1| conserved domain protein [Bacillus cereus AH1134]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +  ++Q+++    G  +  I  LE GK   +      +A  L  PL  L 
Sbjct: 6  RMKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPLEVLF 62


>gi|199599583|ref|ZP_03212967.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
 gi|199589527|gb|EDY97649.1| putative transcriptional regulator [Lactobacillus rhamnosus
          HN001]
          Length = 92

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+ A LTQ+E+  R    QS I+ +E G+   + D M  +A  L   L
Sbjct: 41 RERAGLTQRELAERADVPQSTIARIEHGQ-NTSFDTMSKIAFALGKKL 87


>gi|89070253|ref|ZP_01157577.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus
          HTCC2516]
 gi|89044173|gb|EAR50331.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus
          HTCC2516]
          Length = 187

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +     R +R+   L+Q+E+  RTG     IS++E+  +  ++  +  +      P+
Sbjct: 8  QMVAQRLRVVRQSRGLSQRELARRTGVGSGTISQIESMATQPSVAVLKKILD--GVPM 63


>gi|238784124|ref|ZP_04628138.1| Transcriptional regulator, XRE family with cupin sensor domain
          [Yersinia bercovieri ATCC 43970]
 gi|238714970|gb|EEQ06968.1| Transcriptional regulator, XRE family with cupin sensor domain
          [Yersinia bercovieri ATCC 43970]
          Length = 196

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R   ++T K++  + G ++S +S+LE   ++ ++  +  LA  L+T +  L+
Sbjct: 15 LGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74


>gi|303241397|ref|ZP_07327900.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302591006|gb|EFL60751.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 128

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + +R E  LTQ  +      +++ +S  E G    N D +I ++   +  +  LL
Sbjct: 4  FGDKLKMLRLEKNLTQNGLAKHLNVSKANVSRYELGTRQPNFDTLISISAFFNVSIDWLL 63


>gi|256396427|ref|YP_003117991.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256362653|gb|ACU76150.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 77

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R +R EA LTQ ++    G  QS++S+ E+G   +++  +  +A  L T +  +L+
Sbjct: 17 LRELRHEADLTQVQVAAALGVPQSFVSKYESGDRRLDLIELHHVAKALGTTVQTILE 73


>gi|258653000|ref|YP_003202156.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258556225|gb|ACV79167.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 73

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ R +R  A  +TQ ++ +R G  +  +  +E G+ + +++    +AH     L  + +
Sbjct: 9  NSIRALRFAAGEMTQADLADRIGVTRQTVIAIEQGRYSPSLEMAFRIAHVFGVGLDAVFQ 68


>gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
          DSM 2366]
 gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 327

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  N     RK+  ++Q ++  R   +   + + E G+S  +I     L+  L   L
Sbjct: 5  KMIGNKITEARKKINISQVQLAQRLFISPQAVGKWERGESMPDIITFNRLSEILGVDL 62


>gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3]
 gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  + +R  A  TQ+ + ++ G ++  I+ +E G    +    + LA  L+T
Sbjct: 6  LGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFIPSTIVALDLARALNT 59


>gi|145301000|ref|YP_001143841.1| transcriptional regulator [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142853772|gb|ABO92093.1| putative transcriptional regulator [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 180

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R +A L+Q+E+  R+G    +IS++E  + + ++ ++  +   +   L     
Sbjct: 4  GHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVSSLRKVLEGIPMSLASFFT 63


>gi|116629496|ref|YP_814668.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC
          33323]
 gi|116095078|gb|ABJ60230.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC
          33323]
          Length = 129

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80
               +  R+  ++TQ+++   +  + ++IS++E  G   I+I  +  +A  L T +  L
Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDTIAKALQTSVITL 71

Query: 81 L 81
          +
Sbjct: 72 I 72


>gi|221133625|ref|ZP_03559930.1| transcriptional regulator, XRE family protein [Glaciecola sp.
          HTCC2999]
          Length = 521

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINIDNMIIL 69
          R+  +     RN+RK   LT  ++ +R          + S++S +E GK   + D + ++
Sbjct: 14 RKTHLLGTKVRNLRKRNNLTLDDLSSRCIRFDANNAPSVSYLSMIERGKRVPSWDMLDVI 73

Query: 70 AHTLDTPL 77
          A       
Sbjct: 74 AQVFQKEP 81


>gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi
          Nb-255]
 gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi
          Nb-255]
          Length = 410

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 24/53 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +  R  R+   L+Q+ +    G  ++ ++ +E+G  +++   +  LA    
Sbjct: 7  LGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGTRSVSTLELTRLADLYG 59


>gi|83945538|ref|ZP_00957885.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633]
 gi|83851114|gb|EAP88972.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633]
          Length = 71

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    N  + +R EA LTQ ++  R G  +  I+ +E G  T +    + +A  L  P+ 
Sbjct: 3  RSGLENAMKALRAEAGLTQADLAARVGVTRKTINTVENGVFTPSALLALKIARALGQPVE 62

Query: 79 KLL 81
          ++ 
Sbjct: 63 QVF 65


>gi|319776281|ref|YP_004138769.1| hypothetical protein HICON_17530 [Haemophilus influenzae F3047]
 gi|329123426|ref|ZP_08251990.1| DNA-binding protein [Haemophilus aegyptius ATCC 11116]
 gi|317450872|emb|CBY87097.1| conserved hypothetical protein [Haemophilus influenzae F3047]
 gi|327471008|gb|EGF16463.1| DNA-binding protein [Haemophilus aegyptius ATCC 11116]
          Length = 127

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  +L+Q+++  +   + S  +++E G++ +  D ++ +A   +  L  L+
Sbjct: 6  KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62


>gi|296271002|ref|YP_003653634.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296093789|gb|ADG89741.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 406

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R++   +Q+E+ NR G +   I ++E G  T  ++ +  LA  L       ++
Sbjct: 8  GAQLRALRQQLGWSQEELANRAGLSTGVIKKIE-GGGTARMETLRALARALGVHTVWFVR 66

Query: 83 P 83
          P
Sbjct: 67 P 67


>gi|269958434|ref|YP_003328221.1| putative transcriptional regulator [Anaplasma centrale str.
          Israel]
 gi|269848263|gb|ACZ48907.1| putative transcriptional regulator [Anaplasma centrale str.
          Israel]
          Length = 187

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R    ++Q ++ +R G     + + E G + I I  +  LA  L   +  L+
Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89


>gi|239944537|ref|ZP_04696474.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|239990997|ref|ZP_04711661.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379]
 gi|291448000|ref|ZP_06587390.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
 gi|291350947|gb|EFE77851.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998]
          Length = 344

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +     R++R+ A LTQ  +  + G  +  I+ +E G+  + +D  + L   L+
Sbjct: 16 QLVGAQLRHLRRLAGLTQAALAEQLGVGEDTIASIEQGRRALQLDLAVQLDELLE 70


>gi|262199984|ref|YP_003271193.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262083331|gb|ACY19300.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 199

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R   +LTQ++   R   +  + + +E GKS  +I     +   L      
Sbjct: 7  KTIGRAAREARTALQLTQEDAAERIHVSVEFYARIERGKSLPSIGTFARIVSALGVSADA 66

Query: 80 LL 81
          LL
Sbjct: 67 LL 68


>gi|221232058|ref|YP_002511210.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669]
 gi|220674518|emb|CAR69079.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I  +  +  RKE   +QK +    G   QS IS++E G      D +  LA+ L  PL
Sbjct: 3  ILSDKLKAKRKEKGFSQKTLSE--GICEQSQISKIERGNYMPAADLLYKLANRLQVPL 58


>gi|218901695|ref|YP_002449529.1| hypothetical protein BCAH820_0556 [Bacillus cereus AH820]
 gi|218539522|gb|ACK91920.1| conserved domain protein [Bacillus cereus AH820]
          Length = 49

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+++    G  + ++SE+E GK   ++   I +A  L   +  + 
Sbjct: 1  MSQEKLAKEVGITRQYLSEIENGKKQPSVIIAIKIAKVLKIKVEDIF 47


>gi|125717170|ref|YP_001034303.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|262283414|ref|ZP_06061180.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|125497087|gb|ABN43753.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
 gi|262260905|gb|EEY79605.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 116

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK+  ++Q+E+  R      +I++LE     + I ++  +   L+    +  
Sbjct: 12 AQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVISALELTPEEFF 70


>gi|73537860|ref|YP_298227.1| XRE family transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72121197|gb|AAZ63383.1| transcriptional regulator, XRE family [Ralstonia eutropha JMP134]
          Length = 294

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R     +Q  +    G +Q  IS LE+G+S  + + ++ LA  L  PL +
Sbjct: 18 LRYWRGRRGYSQLALSLAAGVSQRHISFLESGRSRPSREMVLALAERLGVPLRQ 71


>gi|56417165|ref|YP_154239.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries]
 gi|255004638|ref|ZP_05279439.1| hypothetical protein AmarV_05075 [Anaplasma marginale str.
          Virginia]
 gi|23168718|gb|AAN08687.1| transcriptional regulator [Anaplasma marginale str. South Idaho]
 gi|23168730|gb|AAN08693.1| transcriptional regulator [Anaplasma marginale]
 gi|23168742|gb|AAN08699.1| transcriptional regulator [Anaplasma marginale]
 gi|23168754|gb|AAN08705.1| transcriptional regulator [Anaplasma marginale]
 gi|23168766|gb|AAN08711.1| transcriptional regulator [Anaplasma marginale str. Washington
          Okanogan]
 gi|56388397|gb|AAV86984.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries]
          Length = 187

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R    ++Q ++ +R G     + + E G + I I  +  LA  L   +  L+
Sbjct: 30 VGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLI 89


>gi|22536979|ref|NP_687830.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|76787451|ref|YP_329560.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76799305|ref|ZP_00781471.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 18RS21]
 gi|77405543|ref|ZP_00782634.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae H36B]
 gi|77410671|ref|ZP_00787030.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae CJB111]
 gi|22533834|gb|AAM99702.1|AE014229_3 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
 gi|76562508|gb|ABA45092.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76585348|gb|EAO61940.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 18RS21]
 gi|77163207|gb|EAO74159.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae CJB111]
 gi|77175850|gb|EAO78628.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae H36B]
          Length = 71

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  + +R    + Q E+   TG ++  IS +E G+ T ++   + ++      L  
Sbjct: 3  LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKISQVFKESLEN 62

Query: 80 LL 81
          + 
Sbjct: 63 VF 64


>gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans
          PW2]
 gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans
          PW2]
          Length = 210

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R     +Q E+  R G  Q  I+  E+G + +    +I L+  L   +  LL
Sbjct: 3  AYKISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYLL 61


>gi|315169296|gb|EFU13313.1| helix-turn-helix protein [Enterococcus faecalis TX1341]
          Length = 445

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 32/56 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + +   + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 17 KAVRGVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 72


>gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
 gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|300718505|ref|YP_003743308.1| XRE family transcriptional regulator [Erwinia billingiae Eb661]
 gi|299064341|emb|CAX61461.1| XRE family transcriptional regulator [Erwinia billingiae Eb661]
          Length = 95

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDT 75
            F    +  R     +QK +    G     A + I+  E G    ++D +  LA  L+ 
Sbjct: 9  ETFCKRLKQARLAKGFSQKSLGIAAGIDEFVASTRINRYEKGIHEADLDTVQRLAEALEV 68

Query: 76 PLWKLL 81
          P+  L 
Sbjct: 69 PVAYLF 74


>gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301]
          Length = 223

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             + IRK+  +TQ+++  R G  ++ +S +ETGK+ ++  N  IL   L+     L
Sbjct: 3  ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWL 59


>gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
 gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479]
          Length = 232

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++      +   +S  ETG +  ++  +I +A   D  + ++L
Sbjct: 7  GEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMNMPDLSVLIQMAEFYDVEVKEIL 65


>gi|260893216|ref|YP_003239313.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
 gi|260865357|gb|ACX52463.1| transcriptional regulator, XRE family [Ammonifex degensii KC4]
          Length = 93

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E  +     R  R E  LTQ+E+  R G  QS I+ LE+G+++  +  +  +A  LD  
Sbjct: 25 PEYRLLAELVRR-RLEKGLTQEELARRIGTRQSAIARLESGRTSPTLRMLKKVADALDAD 83

Query: 77 LWKLLKP 83
          L   L+P
Sbjct: 84 LEVRLRP 90


>gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis
          M163/99/10]
 gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
 gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
          Length = 182

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|226328473|ref|ZP_03803991.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198]
 gi|225203206|gb|EEG85560.1| hypothetical protein PROPEN_02367 [Proteus penneri ATCC 35198]
          Length = 109

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  + +R++ K+T+ E+  R G      S+LE G   I +D +I +++ L      L+
Sbjct: 6  VGNRIKMLRRQLKITENEMSERLGITMLHYSQLEDGHIKITVDQLITISYILGVTPQSLI 65


>gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 143

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  + +RKE KLTQ+E+  + G   + IS  E G   ++ +    L+   +  
Sbjct: 21 GDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNVS 74


>gi|325662274|ref|ZP_08150889.1| hypothetical protein HMPREF0490_01627 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325471526|gb|EGC74747.1| hypothetical protein HMPREF0490_01627 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 106

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F      +R +  ++ +++    G ++S+I+++E GK+  ++     +   L       
Sbjct: 6  LFYKRLTQLRNKQGISARDMSLSLGQSESYINKIENGKALPSMSAFFYICDFLKIHPRDF 65

Query: 81 L 81
           
Sbjct: 66 F 66


>gi|300174085|ref|YP_003773251.1| putative transcriptional regulator [Leuconostoc gasicomitatum LMG
          18811]
 gi|299888464|emb|CBL92432.1| Putative transcriptional regulator [Leuconostoc gasicomitatum LMG
          18811]
          Length = 193

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D    E        R +R+   ++  ++   TG + S IS+ E G++ I   +MI +   
Sbjct: 3  DNTFSEIQNLGRLIREMRQSRGVSANDLVQVTGLSHSVISKFERGQTDIQFSSMIKILSA 62

Query: 73 LDTPLWKL 80
          +   L  L
Sbjct: 63 MSLTLEDL 70


>gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family
          [Citrobacter youngae ATCC 29220]
 gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family
          [Citrobacter youngae ATCC 29220]
          Length = 191

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +  ++  R G +++ I ++E G+S+     +  L+      +  L+
Sbjct: 13 GARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSMLI 71


>gi|227503434|ref|ZP_03933483.1| transcriptional regulator [Corynebacterium accolens ATCC 49725]
 gi|306836322|ref|ZP_07469302.1| transcriptional regulator [Corynebacterium accolens ATCC 49726]
 gi|227075937|gb|EEI13900.1| transcriptional regulator [Corynebacterium accolens ATCC 49725]
 gi|304567793|gb|EFM43378.1| transcriptional regulator [Corynebacterium accolens ATCC 49726]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R +  +T +E+ +    +  ++SELE G+  ++ + +  + H LD  + 
Sbjct: 37 REALGLTLRAFRADKSVTLRELASVARVSPGYLSELERGRKEVSSELLASVCHALDASVS 96

Query: 79 KLL 81
           +L
Sbjct: 97 DVL 99


>gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82]
          Length = 216

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RKE K+ Q  +    G +   IS+ E  ++  N +N++ LA+ L      
Sbjct: 4  QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDY 63

Query: 80 LLK 82
          L+K
Sbjct: 64 LIK 66


>gi|118589234|ref|ZP_01546640.1| transcriptional regulator, XRE family protein [Stappia aggregata
          IAM 12614]
 gi|118437934|gb|EAV44569.1| transcriptional regulator, XRE family protein [Stappia aggregata
          IAM 12614]
          Length = 272

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  +++Q  + +    +Q  +S LE+G+S  + D ++ LA  L+ PL +
Sbjct: 12 LRQWRQHRRMSQLALASEADISQRHLSFLESGRSRPSRDMVMHLAGHLNIPLRE 65


>gi|222055496|ref|YP_002537858.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221564785|gb|ACM20757.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 117

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET--GKSTINIDNMIILAHT 72
           L E   F++ F   R  A +TQ E+  R G  QS I+ LE+  GK + +I  +   AH 
Sbjct: 23 ALDEEFRFLDEFLKARAAAGVTQAEVAERIGTTQSAIARLESGGGKHSPSIATLQKYAHA 82

Query: 73 LD 74
          L 
Sbjct: 83 LG 84


>gi|111656768|ref|ZP_01407642.1| hypothetical protein SpneT_02001945 [Streptococcus pneumoniae
          TIGR4]
          Length = 73

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  L QK+I     F  S  +++E G+  +  D ++ L+   D     LL
Sbjct: 3  RRLRDLREDHDLPQKQIATILSFTNSAYAKIERGEHALTADVLVKLSDFYDVSTDYLL 60


>gi|58699926|ref|ZP_00374515.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533557|gb|EAL57967.1| transcriptional regulator, putative [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 293

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R   + TQK++ ++ G     I E E G +TI  D +  +A  L   +  LL
Sbjct: 184 GQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYEIAGALSVNIKVLL 242



 Score = 38.1 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + R     TQ E+ +  G     ++  E G   I I+ + ++A  L      LL
Sbjct: 30 GQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 88


>gi|323498569|ref|ZP_08103562.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
 gi|323316458|gb|EGA69476.1| transcriptional regulator [Vibrio sinaloensis DSM 21326]
          Length = 103

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
             R+IRK+  +TQ+E+  + G     A + IS+ ETGK   +   +  +A  L  P
Sbjct: 7  RRLRHIRKKQGITQEELGYKLGMEPAGASARISQYETGKHAPDYATVKRIADVLQAP 63


>gi|313893962|ref|ZP_07827528.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
 gi|313441526|gb|EFR59952.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon
          158 str. F0412]
          Length = 91

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R+ A LTQ+++  ++G  QS I+ +E G +  +I  +  +A  LD  
Sbjct: 36 IAKAREAAGLTQRDLAEKSGVPQSTIARIEQG-ANTSISTLCKIAFALDKQ 85


>gi|312873589|ref|ZP_07733636.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
 gi|311090842|gb|EFQ49239.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
          2052A-d]
          Length = 228

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF       R++  LT +E+  + G A+S IS   +G+    I+ +  +A+  +T ++
Sbjct: 5  KIIFGQMIDYFRRQNNLTMEELGQKLGKAKSSISRWVSGERYPKIEEIEQIANFFNTDIY 64

Query: 79 KLL 81
           L+
Sbjct: 65 TLI 67


>gi|307244174|ref|ZP_07526289.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
          DSM 17678]
 gi|306492324|gb|EFM64362.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis
          DSM 17678]
          Length = 188

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N     RK   LT K+  + +G + + +S+LE G    ++  +  +A T++T L  LL+
Sbjct: 8  NRLIEYRKSNNLTIKDFSDMSGISTALLSQLERGVGNPSLSVLNSIADTMNTSLSSLLE 66


>gi|303248493|ref|ZP_07334751.1| plasmid maintenance system antidote protein, XRE family
           [Desulfovibrio fructosovorans JJ]
 gi|302490113|gb|EFL50033.1| plasmid maintenance system antidote protein, XRE family
           [Desulfovibrio fructosovorans JJ]
          Length = 119

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 24/56 (42%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R    LTQ  +   TG  +  ISE+E G+  I   N  +LA  L     +LL
Sbjct: 62  LAGARYREGLTQIALAEATGIPRRHISEMENGRRPIGKKNARLLAEALKIDPRRLL 117


>gi|300172714|ref|YP_003771879.1| transcriptional repressor [Leuconostoc gasicomitatum LMG 18811]
 gi|299887092|emb|CBL91060.1| Transcriptional repressor [Leuconostoc gasicomitatum LMG 18811]
          Length = 126

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLD 74
          +  +  F +  + IR+    T ++   +   + +++S++E G      ++ +  +A  L 
Sbjct: 1  MVTKETFGSQLKKIREIKGFTVRQTAMQGHISPAYLSQIENGNKNIPKVETLYKIASGLR 60

Query: 75 TPLWKLL 81
               +L
Sbjct: 61 ISNDDIL 67


>gi|269794408|ref|YP_003313863.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
 gi|269096593|gb|ACZ21029.1| transcriptional regulator [Sanguibacter keddieii DSM 10542]
          Length = 64

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R +R+ A L+Q  +    G ++  I+ +ETGK   ++   I +A    T + ++ 
Sbjct: 3  NDVRALREAAGLSQAALGTVLGVSRQTINSIETGKYDPSLPLAIAIARHFTTTVEEIF 60


>gi|240948027|ref|ZP_04752444.1| helix-turn-helix domain-containing protein [Actinobacillus minor
          NM305]
 gi|240297643|gb|EER48120.1| helix-turn-helix domain-containing protein [Actinobacillus minor
          NM305]
          Length = 148

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 33/59 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R IR+  + +Q+++  +   + +  +++E G++ + +D +  +A  LD  + +L++
Sbjct: 5  EKIRRIRESKEWSQEQMAEKLNMSLNGYAKIERGETKLYLDKLEQIAQILDIDVVELIQ 63


>gi|261400045|ref|ZP_05986170.1| DNA-binding protein [Neisseria lactamica ATCC 23970]
 gi|269210268|gb|EEZ76723.1| DNA-binding protein [Neisseria lactamica ATCC 23970]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|221199730|ref|ZP_03572773.1| transcriptional regulator, XRE family with cupin sensor domain
           [Burkholderia multivorans CGD2M]
 gi|221208665|ref|ZP_03581665.1| transcriptional regulator, XRE family with cupin sensor domain
           [Burkholderia multivorans CGD2]
 gi|221171476|gb|EEE03923.1| transcriptional regulator, XRE family with cupin sensor domain
           [Burkholderia multivorans CGD2]
 gi|221179969|gb|EEE12373.1| transcriptional regulator, XRE family with cupin sensor domain
           [Burkholderia multivorans CGD2M]
          Length = 342

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+EAK T  E+      +  ++S++E   + I+I +++ +A  L+ PL  L+
Sbjct: 73  GQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISISSLVNVAKALNVPLGALI 131


>gi|184201232|ref|YP_001855439.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201]
 gi|183581462|dbj|BAG29933.1| putative Xre family DNA-binding protein [Kocuria rhizophila
          DC2201]
          Length = 110

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R++R+    T +E+ +    +  ++SE+E G+   + + +  +   LD P+ 
Sbjct: 5  RQEIGEVLRSVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLASICTALDIPMS 64

Query: 79 KLLK 82
          ++L+
Sbjct: 65 QMLR 68


>gi|169342934|ref|ZP_02863962.1| UDP-glucose 6-dehydrogenase [Clostridium perfringens C str.
          JGS1495]
 gi|169298843|gb|EDS80917.1| UDP-glucose 6-dehydrogenase [Clostridium perfringens C str.
          JGS1495]
          Length = 492

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +        RKE  +TQ+++ + T   ++ IS LE+     +I  +  L   L+     L
Sbjct: 8  LLAKKVIESRKEKNITQQQLADLTNINRAMISRLESMDYIPSIPQLEKLGEVLEFEPISL 67

Query: 81 L 81
           
Sbjct: 68 F 68


>gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          TIE-1]
 gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          TIE-1]
          Length = 474

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++       R +R++  +TQ+ +    G + S+++++E  +  + +  ++ L  TL  
Sbjct: 2  KKAYVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGI 59


>gi|163857884|ref|YP_001632182.1| anaerobic benzoate catabolism transcriptional regulator
          [Bordetella petrii DSM 12804]
 gi|163261612|emb|CAP43914.1| aroK1 [Bordetella petrii]
          Length = 302

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 11 LSDAILRERM-----IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          L       R            R +R    +T+K +   TG ++  ++ LE G    +I  
Sbjct: 5  LDKESPESRREPFLVALGERVRRLRAIRGMTRKSLSQATGVSERHLANLEHGVGNASILV 64

Query: 66 MIILAHTLDTPLWKLL 81
          ++ +A   +  L +L+
Sbjct: 65 LLQIAKAFNCALAELV 80


>gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195]
 gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195]
 gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  RKE   TQ  I  + G  ++ +S  E+G ++   +N+  LA  L      L
Sbjct: 1  MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|149915319|ref|ZP_01903846.1| transcriptional regulator, XRE family protein [Roseobacter sp.
          AzwK-3b]
 gi|149810608|gb|EDM70449.1| transcriptional regulator, XRE family protein [Roseobacter sp.
          AzwK-3b]
          Length = 466

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 29/65 (44%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +++      R  R+   LTQK+   + G +  +++++E     ++   ++ LA     
Sbjct: 2  PTQKLYAGAKLRETRQRLGLTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGF 61

Query: 76 PLWKL 80
           + +L
Sbjct: 62 DVTEL 66


>gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185]
 gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  RKE   TQ  I  + G  ++ +S  E+G ++   +N+  LA  L      L
Sbjct: 1  MMNERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|110679476|ref|YP_682483.1| transcriptional regulator, putative [Roseobacter denitrificans
          OCh 114]
 gi|109455592|gb|ABG31797.1| transcriptional regulator, putative [Roseobacter denitrificans
          OCh 114]
          Length = 468

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R +R+    TQ E+  + G + ++I+ LE  + ++++  ++ L  +      
Sbjct: 3  KTLVGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWR 62

Query: 79 KLL 81
           L+
Sbjct: 63 SLV 65


>gi|302670073|ref|YP_003830033.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302394546|gb|ADL33451.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 90

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R E K+TQ+E+  ++G  QS IS +E G     ++ +  LA  L   L
Sbjct: 36 AARIEKKMTQQELSQKSGVRQSNISRIEKGVCVPTLNTLNELAKGLGKRL 85


>gi|296110822|ref|YP_003621203.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154]
 gi|295832353|gb|ADG40234.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154]
          Length = 93

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           NN R +R   K+TQ ++       QS I+  E G    +IDN++ +A  L 
Sbjct: 27 GNNIRYLRYANKITQYQLAKILHVTQSTIAHYENGTRIPDIDNLMDIARNLG 78


>gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 345

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKEA +TQ+E+ NR G     +++ E   S  +I+ +  +A  LD  L  LL
Sbjct: 7  IKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLL 62


>gi|229589661|ref|YP_002871780.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229361527|emb|CAY48403.1| putative regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 185

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E         ++RK  KLT  ++  +   +  ++S++E G S   + ++  ++H LD 
Sbjct: 4  QEELATLAALIHDLRKHKKLTLAQLAQKIERSVGFLSQVERGLSRPTVADLTAISHALDV 63

Query: 76 P 76
          P
Sbjct: 64 P 64


>gi|228477777|ref|ZP_04062405.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228250469|gb|EEK09683.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + +R+   +TQ+++ ++ G  +  I  LE  +   +++  + +A   +  + +L +
Sbjct: 10 NLKEVREAYGMTQQDLADQVGIRRETIVHLENNRYNPSLEMALKIAQVFNKQVEELFR 67


>gi|163745005|ref|ZP_02152365.1| transcriptional regulator, XRE family with cupin sensor domain
          [Oceanibulbus indolifex HEL-45]
 gi|161381823|gb|EDQ06232.1| transcriptional regulator, XRE family with cupin sensor domain
          [Oceanibulbus indolifex HEL-45]
          Length = 196

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 25/51 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R  R    LT +++   +G +  ++S++E G +T ++  +  +A  L   
Sbjct: 1  MRKQRHRLSLTLQQLGEASGVSVGYLSQVERGLATPSLGTLSQIAVALQVE 51


>gi|153854463|ref|ZP_01995741.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814]
 gi|149752989|gb|EDM62920.1| hypothetical protein DORLON_01736 [Dorea longicatena DSM 13814]
          Length = 499

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N   N RKE  +TQ+++ + TG  +S IS LE      +I  +  L  TLD     L
Sbjct: 14 LLANLVTNRRKEKHMTQQDLADITGINRSMISRLEKEDFIPSIPQLEQLGETLDFEPQTL 73

Query: 81 L 81
           
Sbjct: 74 F 74


>gi|312887802|ref|ZP_07747389.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311299621|gb|EFQ76703.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 100

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 17 RERMIFVNNFRN---------IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           +R  F   F            RK   LTQ E+ ++ G  +++IS++E     + +  + 
Sbjct: 24 PKREKFEQGFEEFKLGVLIHEARKAKGLTQTELADKCGTTKAYISKVENDVQDVRVATLR 83

Query: 68 IL 69
           +
Sbjct: 84 KI 85


>gi|296157333|ref|ZP_06840169.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295892669|gb|EFG72451.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 34/76 (44%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P  ++       +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +
Sbjct: 17 ASPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVL 76

Query: 67 IILAHTLDTPLWKLLK 82
            +A  L   +   L+
Sbjct: 77 CKVAAALKVSVAAFLR 92


>gi|222086297|ref|YP_002544830.1| transcriptional regulator [Agrobacterium radiobacter K84]
 gi|221723745|gb|ACM26901.1| transcriptional regulator [Agrobacterium radiobacter K84]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R +  +  R  R+  +L+Q E       +Q  +S +E+G++  + D ++ LA  LD 
Sbjct: 3  MPARSL-GDYLREWRQRRRLSQLEFALEAEISQRHLSFIESGRALPSRDMLMHLAERLDV 61

Query: 76 PLWK 79
          PL  
Sbjct: 62 PLRD 65


>gi|221141579|ref|ZP_03566072.1| hypothetical protein SauraJ_08055 [Staphylococcus aureus subsp.
          aureus str. JKD6009]
 gi|302344735|ref|YP_003813104.1| hypothetical protein pSK1_p06 [Staphylococcus aureus]
 gi|281336089|gb|ADA62638.1| hypothetical protein SAP025A_019 [Staphylococcus epidermidis]
 gi|282166337|gb|ADA80353.1| hypothetical protein SAP109A_023 [Staphylococcus epidermidis]
 gi|282166672|gb|ADA80688.1| hypothetical protein SAP098A_019 [Staphylococcus aureus]
 gi|282166876|gb|ADA80892.1| hypothetical protein SAP100A_001 [Staphylococcus aureus]
 gi|300492209|gb|ADK23690.1| hypothetical protein [Staphylococcus aureus]
 gi|302751831|gb|ADL66008.1| putative XRE-family transcriptional regulator [Staphylococcus
          aureus subsp. aureus str. JKD6008]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +    +RK+  LTQ+ +  +       I  +E G+  ++ + +  +++ LD  + +L +
Sbjct: 4  SKIAKLRKDKSLTQENLAEKACVTVRTIQRIEAGEE-VSSETLKNISNALDVTINELFE 61


>gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM
          13280]
 gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM
          13280]
          Length = 201

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R+ A LTQ E+       +  +   E G +  ++ ++ ++A  L+T +  LL
Sbjct: 7  VGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNTLPDVQSLQLVAKALNTKVDGLL 66


>gi|153956442|ref|YP_001397207.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856749|ref|YP_002473871.1| hypothetical protein CKR_3406 [Clostridium kluyveri NBRC 12016]
 gi|302387477|ref|YP_003823299.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|146349300|gb|EDK35836.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219570473|dbj|BAH08457.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
 gi|302198105|gb|ADL05676.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 107

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 21/62 (33%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R  A +TQ  +  + G    +I  +E       +  ++ +   L      + 
Sbjct: 8  FGQTIKEARIAAGMTQDALAEQVGVTPRYIMAIENENKHPRMPVLLKIIRALKISADTIF 67

Query: 82 KP 83
           P
Sbjct: 68 YP 69


>gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [marine gamma proteobacterium HTCC2080]
 gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [marine gamma proteobacterium HTCC2080]
          Length = 70

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN   +RK A  TQ+++ +  G ++  I+ +E G    +    + ++ TL   +  L +
Sbjct: 10 NNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYVPSTVLALKISQTLKCTVDDLFQ 68


>gi|72162200|ref|YP_289857.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71915932|gb|AAZ55834.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 171

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTG-----FAQSWISELETGKSTIN 62
           P   + +    +    N R IR+   L+  E+  R            I+ +E G+  ++
Sbjct: 6  TPRRPNTLGPTGLQVAANIRRIRQLRGLSTTEMARRLTERGRPITAVAITNVEHGRRRVD 65

Query: 63 IDNMIILAHTLDTPLWKLLKP 83
          +D+++  A  LD     LL P
Sbjct: 66 VDDLVAFAAVLDVSPSALLLP 86


>gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  + ++A   +  +
Sbjct: 2  EKLLIGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTSYPDITLLPVIATFFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|148256218|ref|YP_001240803.1| HTH-type transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146408391|gb|ABQ36897.1| putative HTH-type transcriptional regulator (with cupin domain)
          [Bradyrhizobium sp. BTAi1]
          Length = 214

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 29/47 (61%)

Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          + + +  ++G +++ + ++ETGKS   I  +  +A+ LD P  +LL+
Sbjct: 47 SLERLARQSGVSRAMLGQIETGKSVPTISVLWKIANALDVPFAQLLE 93


>gi|238798535|ref|ZP_04642013.1| Transcriptional regulator, XRE family with cupin sensor domain
          [Yersinia mollaretii ATCC 43969]
 gi|238717622|gb|EEQ09460.1| Transcriptional regulator, XRE family with cupin sensor domain
          [Yersinia mollaretii ATCC 43969]
          Length = 196

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R   ++T K++  + G ++S +S+LE   ++ ++  +  LA  L+T +  L+
Sbjct: 15 LGMRLRHARLAQEITLKQLAQKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74


>gi|150390882|ref|YP_001320931.1| helix-turn-helix domain-containing protein [Alkaliphilus
          metalliredigens QYMF]
 gi|149950744|gb|ABR49272.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens
          QYMF]
          Length = 131

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R + ++TQK++  +   +Q+ IS+LE+G+    I  +  ++  L      L+K
Sbjct: 44 RIDQEITQKQLAEKLKVSQAMISKLESGEYNPTIGQLWKISKKLGWTFEVLMK 96


>gi|325831949|ref|ZP_08165046.1| hypothetical protein HMPREF9404_4290 [Eggerthella sp. HGA1]
 gi|325486270|gb|EGC88722.1| hypothetical protein HMPREF9404_4290 [Eggerthella sp. HGA1]
          Length = 50

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 26/47 (55%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q       G ++ ++ ++E+GK+   +D +  +A  LDT + +L 
Sbjct: 1  MSQTSFALMVGVSRKYLIDIESGKANPTVDMLERIAGGLDTTVGRLF 47


>gi|309798715|ref|ZP_07692980.1| putative transcriptional regulator [Streptococcus infantis
          SK1302]
 gi|308117658|gb|EFO55069.1| putative transcriptional regulator [Streptococcus infantis
          SK1302]
          Length = 116

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L     +  
Sbjct: 13 QKVKYFRTQKKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIVALKMTPEEFF 70


>gi|307331049|ref|ZP_07610179.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306883346|gb|EFN14402.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 284

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 6  RDEPHLSDAILRER----MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          RD+  ++     E       F    + +R EA LTQ++   R  ++ ++++++E G+   
Sbjct: 5  RDDMRMTKDSEPETSESLKTFGAVLKALRDEAGLTQEQFAPRVRYSATYVAKMEQGRRFP 64

Query: 62 NIDNMIILAHTLDTPLWKLL 81
            + +      L  P  ++L
Sbjct: 65 PKELIPRAEEVLGAPAVRVL 84


>gi|322433358|ref|YP_004210575.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321165747|gb|ADW71448.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 84

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 +  E   +QK++    G    ++ ++E GK  I +  +  ++  L   +  +L
Sbjct: 21 LGERIYALITERGWSQKKLAELAGIHADYVHDVEYGKKEICLRMLARISAALGCKMSDML 80

Query: 82 K 82
          +
Sbjct: 81 E 81


>gi|270289873|ref|ZP_06196099.1| XRE family transcriptional regulator [Pediococcus acidilactici
          7_4]
 gi|270281410|gb|EFA27242.1| XRE family transcriptional regulator [Pediococcus acidilactici
          7_4]
          Length = 188

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R++  LTQ E+ ++    +  IS  E GK+  NI  +  LA      + +
Sbjct: 1  MSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDE 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|253991420|ref|YP_003042776.1| hypothetical protein PAU_03947 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782870|emb|CAQ86035.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 88

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +     R    L+Q +I+N TG  ++ +S +E G+  I++  ++ +   L+ P+ + 
Sbjct: 19 IVGSRLMVARSHRGLSQNDIQNATGIDRATLSRIENGRQHISLYQLLQILTVLEIPIEEF 78

Query: 81 LK 82
          L+
Sbjct: 79 LR 80


>gi|190571946|ref|YP_001967670.1| conjugal transfer protein TrbA [Comamonas testosteroni CNB-1]
 gi|311109687|ref|YP_003982539.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans
          A8]
 gi|119943684|gb|ABM06206.1| TrbA [Comamonas testosteroni CNB-1]
 gi|310764376|gb|ADP19824.1| helix-turn-helix family protein 18 [Achromobacter xylosoxidans
          A8]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           A      IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A 
Sbjct: 3  KATPLYNYIFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMQDIAK 61


>gi|149179909|ref|ZP_01858414.1| transcriptional activator [Bacillus sp. SG-1]
 gi|148852101|gb|EDL66246.1| transcriptional activator [Bacillus sp. SG-1]
          Length = 418

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M   +  R  R + KLTQ+E+   TG  + S++S++E  ++T + + + +L   L   L 
Sbjct: 1  MTIGSKIRYHRMKKKLTQEELA--TGILSVSYLSKIENNQTTASSEVIELLCKRLGIELL 58

Query: 79 K 79
          +
Sbjct: 59 Q 59


>gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86]
 gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56]
          Length = 136

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R++A LT K++  + G  +S IS  E+G ++  ++++  LA   +  +  L+
Sbjct: 8  FSLMVKTLRQQAGLTMKQLAEKMGKTESAISRWESGDNSPKLEDINALADFFNVDMNTLV 67


>gi|119503754|ref|ZP_01625836.1| transcriptional regulator, Cro/CI family protein [marine gamma
          proteobacterium HTCC2080]
 gi|119460262|gb|EAW41355.1| transcriptional regulator, Cro/CI family protein [marine gamma
          proteobacterium HTCC2080]
          Length = 66

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  + +R E   TQ ++  +    +  ++ +E GK   ++     +A     P+  +  P
Sbjct: 3  NRLKVLRAEHDWTQADLAAQLNVTRQTVNAIEKGKYDPSLPLAFKIAGVFQMPIDHIFFP 62


>gi|91218312|ref|ZP_01255257.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755]
 gi|91183521|gb|EAS69919.1| putative DNA-binding protein [Psychroflexus torquis ATCC 700755]
          Length = 103

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           RN R+E  LTQ+++       +++IS +E   S + +  +  +  
Sbjct: 45 LRNAREEKNLTQEQLGELIDKKRTYISRVENNGSNLTLKTLFDIVE 90


>gi|72161652|ref|YP_289309.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71915384|gb|AAZ55286.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R  R+ A L+Q+E+      + + +S +E G   I  D++  +   L  P
Sbjct: 12 GQKIREHRQHAGLSQEELAKLVALSPTMLSAMERGTRGIKRDHVERIDAALGIP 65


>gi|15672114|ref|NP_266288.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|12722980|gb|AAK04230.1|AE006251_6 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403]
          Length = 106

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F +N R  R  A LTQKE+      ++  +   E G+   +++ +  +A+     +  LL
Sbjct: 40  FSSNLRQKRAIAGLTQKELGKLLYSSKQAVCNWEHGRREPSLEVVQEMANVFKCSIDDLL 99

Query: 82  K 82
           K
Sbjct: 100 K 100


>gi|154247535|ref|YP_001418493.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154161620|gb|ABS68836.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus
          Py2]
          Length = 130

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 30/74 (40%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P L D      ++     +  R  + ++Q+ +    G     I + E GK+ I    +++
Sbjct: 2  PTLKDKTKELDVVIGFRVKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLVM 61

Query: 69 LAHTLDTPLWKLLK 82
          +A  L      LL+
Sbjct: 62 IADFLKVSALFLLR 75


>gi|329577950|gb|EGG59368.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 365

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 3  GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54


>gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1057]
          Length = 167

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC
          13813]
          Length = 230

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +N + +R E + +Q E+ N     ++  ++ E+GKS  N  N+  LA  LD P
Sbjct: 4  GSNLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVP 57


>gi|312887654|ref|ZP_07747246.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311299869|gb|EFQ76946.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 124

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP+R   +             +   F+  RK   LTQ +I +  G  Q  + + E+G + 
Sbjct: 1  MPKRPVTD-------------YAKRFKIFRKYKDLTQIQIADVLGVTQPAVQKWESGATD 47

Query: 61 INIDNMIILAHTLDTPL 77
          ++I+ +  L   L+  L
Sbjct: 48 LSIEIIQKLRDKLNMSL 64


>gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7]
          Length = 345

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  RKEA +TQ+E+ NR G     +++ E   S  +I+ +  +A  LD  L  LL
Sbjct: 7  IKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDTLL 62


>gi|271499443|ref|YP_003332468.1| XRE family transcriptional regulator [Dickeya dadantii Ech586]
 gi|307129761|ref|YP_003881777.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937]
 gi|270342998|gb|ACZ75763.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586]
 gi|306527290|gb|ADM97220.1| hypothetical protein Dda3937_03632 [Dickeya dadantii 3937]
          Length = 88

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  R +A LTQ+++    G     A+S IS+ E+G      + M   A  L+ P
Sbjct: 5  RLKTARLQANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP 60


>gi|259416970|ref|ZP_05740890.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
 gi|259348409|gb|EEW60186.1| transcriptional regulator, XRE family [Silicibacter sp.
          TrichCH4B]
          Length = 462

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R    LTQK+   + G +  +++++E     ++   ++ LA      
Sbjct: 3  TQKLYAGAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|302531671|ref|ZP_07284013.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4]
 gi|302440566|gb|EFL12382.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4]
          Length = 193

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R    ++  E+   TG + S +S LE+G+   +++ ++ +   L  P  +
Sbjct: 12 EQIAPRLRRARDHRGVSLAELSRSTGISTSTLSRLESGQRKPSLELLLPITAALGIPFDE 71

Query: 80 LL 81
          ++
Sbjct: 72 IV 73


>gi|304315787|ref|YP_003850932.1| XRE family transcriptional regulator [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302777289|gb|ADL67848.1| transcriptional regulator, XRE family [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 62

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RK+ KLTQK+I N    + S+ S +E G     ++    +A   +  + +L 
Sbjct: 6  KLIQERKKQKLTQKDIANILEISLSYYSAIERGIRNPTLELAKKIAELFNKTIEELF 62


>gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 96

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  +++RKE  +TQ ++      ++S ++  E      ++  ++ ++   +  L  L
Sbjct: 1  MLGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVEPSLSVLVKISDRFNVSLDYL 60

Query: 81 LK 82
          L+
Sbjct: 61 LE 62


>gi|229113235|ref|ZP_04242730.1| hypothetical protein bcere0018_54440 [Bacillus cereus Rock1-15]
 gi|228670261|gb|EEL25609.1| hypothetical protein bcere0018_54440 [Bacillus cereus Rock1-15]
          Length = 60

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +  ++Q+++ N+ G  +  I  LE GK   +      ++  L+ P+  L 
Sbjct: 1  MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDISKVLEAPIETLF 56


>gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC
          53516]
 gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC
          53516]
          Length = 134

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLW 78
          M F    + +R++  LTQ E+ ++ G     IS  ET G      D    +A   +  + 
Sbjct: 1  MSFGAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDIN 60

Query: 79 KLLK 82
           LL 
Sbjct: 61 FLLT 64


>gi|227358409|ref|ZP_03842744.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
 gi|227161367|gb|EEI46420.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
          Length = 104

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        RKE  +T +EI +    +Q   S +E G + I ++++  +A  L     +L
Sbjct: 10 IIAYRIMQKRKELGMTGREIAHSLEISQQHYSRIENGHTKITVEHLFSIAFILGVKPKEL 69

Query: 81 L 81
          L
Sbjct: 70 L 70


>gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme
          DSM 15981]
 gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme
          DSM 15981]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+A ++Q+++  R   ++  +++ ET   T +++N+  ++      L  L
Sbjct: 1  MLSETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGTPDVENLRAISALFQISLDDL 60

Query: 81 LK 82
          L+
Sbjct: 61 LE 62


>gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
 gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61]
 gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
          Length = 135

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+ + TQ+++  +   ++S IS+ E G    ++ ++  L    +     LL
Sbjct: 4  LGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLL 63


>gi|149019378|ref|ZP_01834740.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae
          SP23-BS72]
 gi|147931248|gb|EDK82227.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae
          SP23-BS72]
          Length = 69

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRYLGKTLDQLF 62


>gi|172064970|ref|YP_001815682.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171997212|gb|ACB68129.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 304

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A+L  +++  R   +++ + +LE G+  + ID +  LA      L  L+
Sbjct: 22 GERLRAYRMAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLM 79


>gi|99035917|ref|ZP_01314965.1| hypothetical protein Wendoof_01000195 [Wolbachia endosymbiont of
          Drosophila willistoni TSC#14030-0811.24]
          Length = 306

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ R E   TQK++  + G     I + E G   I+I+ +  +A  L   +  L+
Sbjct: 13 VGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGALSVSITDLI 72

Query: 82 K 82
           
Sbjct: 73 T 73



 Score = 43.1 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R   + TQK++  +    +  IS  E G+    +  +  +A  L   +  LL
Sbjct: 166 VGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRVATPLGKLYEIAEALSISITDLL 225

Query: 82  K 82
            
Sbjct: 226 T 226


>gi|86159944|ref|YP_466729.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85776455|gb|ABC83292.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 265

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +  A+      F    R  R+   L+Q E+  R G  Q  +S +E G+S    + +I LA
Sbjct: 1  MPIALPATATSFPGALRRWRRVRSLSQLELALRAGTTQRHLSFIEQGRSHPGREMVIRLA 60

Query: 71 HTLDTPLWK 79
           TL   L +
Sbjct: 61 ETLGLTLRE 69


>gi|83859767|ref|ZP_00953287.1| hypothetical protein OA2633_07199 [Oceanicaulis alexandrii
          HTCC2633]
 gi|83852126|gb|EAP89980.1| hypothetical protein OA2633_07199 [Oceanicaulis alexandrii
          HTCC2633]
          Length = 149

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R +R +   +Q+++   +G ++  I   E G  T +++ +  LA + D    ++
Sbjct: 7  LRALRLDKGWSQEQLAAISGLSERTIQRAERGD-TPSLETVGALAASFDLSSAQM 60


>gi|331086447|ref|ZP_08335527.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406213|gb|EGG85736.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 179

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  R    ++Q+ +   +G   S I + E G      D ++ +A+ L   +
Sbjct: 4  GEKIKYFRNMRGISQETLGQLSGINSSTIKKYEYGIRNPKPDQLLKIANALGISI 58


>gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
 gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1]
          Length = 120

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R +   TQ E+ N+   ++  I+  E G+   +I  +  L++  +  L  L+
Sbjct: 5  GSKIRVERNKHGWTQVELANKMNLSKQTINNWEHGRRIPDIQTLKELSNLFNVSLEYLV 63


>gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 169

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE  LTQ+ + +  G     +   E GK+ I  D    LA      +  LL
Sbjct: 2  NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQTLADFFGVSVGYLL 59


>gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 114

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R++ KLTQ E+    G   + +S  E+ ++  + + +I L+   D     LL
Sbjct: 3  FNIRLKQLRQKHKLTQSELAEILGLKPTAVSNYESRRNEPSFEKLIALSRYFDVSCDYLL 62


>gi|158348425|ref|YP_001522916.1| Predicted transcription regulator [Bacillus virus 1]
 gi|190410765|gb|ACE78285.1| predicted transcription regulator [Bacillus virus 1]
          Length = 78

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWKLL 81
           R++R+   +TQ+E+    G  +  I ++E G  K   + + M  +A      +  + 
Sbjct: 5  LRDVRRSFDITQEELAKAVGTTRQTIHKIERGKLKRAPSYELMYAIAQFFGKKVEDIF 62


>gi|147668711|ref|YP_001213529.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269659|gb|ABQ16651.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1]
          Length = 61

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             R+ R +   +Q E+  + G     ++ LE GK   +   +  LA  L+     +
Sbjct: 3  KTLRDHRLDKFWSQAELAKQAGIGADTVNRLENGKQNPSFITIRKLAKALNVKPEDI 59


>gi|154251324|ref|YP_001412148.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans
           DS-1]
 gi|154155274|gb|ABS62491.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans
           DS-1]
          Length = 263

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 14  AILRERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           AI+  R+    N  R  R+   +   E+    G +  ++SE+ETGK       M  +A  
Sbjct: 58  AIVAHRIADGENPVRVWREYRGMKAIELARAAGMSAPYLSEIETGKKDGTFRTMAGIAEV 117

Query: 73  LDTPLWKLLKP 83
           L   L  L  P
Sbjct: 118 LRVSLDDLAPP 128


>gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium
          BBFL7]
 gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium
          BBFL7]
          Length = 269

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    +RKE  LTQ+E+          I  +E G  T     +  +   L   +  + 
Sbjct: 6  LGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVTPRSYTIKNILSALGKSIDDVF 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|49081996|gb|AAT50398.1| PA0906 [synthetic construct]
          Length = 238

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
            +  RK A L+Q ++    G  Q+ IS+LE GKS      +  +A      PLW
Sbjct: 6  RIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRAT-SFVAQIAGACGVNPLW 59


>gi|238786359|ref|ZP_04630292.1| DNA-binding phage-related protein [Yersinia bercovieri ATCC
          43970]
 gi|238712730|gb|EEQ04809.1| DNA-binding phage-related protein [Yersinia bercovieri ATCC
          43970]
          Length = 100

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   ++ RK   LTQ+++  + G  +  IS +E G S  N+  +   A  L 
Sbjct: 34 RKALMQQLKDARKALHLTQQDVAQKIGTQKQNISRMENGGSVPNLATLSRYAAALG 89


>gi|172057739|ref|YP_001814199.1| XRE family transcriptional regulator [Exiguobacterium sibiricum
          255-15]
 gi|171990260|gb|ACB61182.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum
          255-15]
          Length = 294

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTP 76
           N  + IR+E   TQ E+    G  +Q+ IS++E G+++  +D +  +A     P
Sbjct: 9  GNEIKRIRQERNWTQSELCQ--GICSQAEISKIENGRNSPTVDLLQQIAERFHVP 61


>gi|110638280|ref|YP_678489.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280961|gb|ABG59147.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406]
          Length = 259

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N +  RK+   TQ+++  R G  +S +   E G++   ++ + ILA   +T +  L
Sbjct: 3  VISENVKYFRKQLGFTQEQLAQRIGIKRSLLGAYEEGRAEPGLETLTILARLFETTVDAL 62

Query: 81 L 81
          +
Sbjct: 63 I 63


>gi|330967852|gb|EGH68112.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae
          str. M302091]
          Length = 125

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P+   D     + ++  R    +N + +R +  L+   +   TG  ++ ++++E+G+S  
Sbjct: 14 PQGSSDSTQSDEDLIGPR--VAHNLQRLRSKRYLSMDALARLTGVNRAMLAQIESGRSVP 71

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          +I  +  +A  L   +   L+
Sbjct: 72 SIKVLCKIAKGLKVSIAAFLE 92


>gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK160]
          Length = 205

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ +  + G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|325107714|ref|YP_004268782.1| hypothetical protein Plabr_1144 [Planctomyces brasiliensis DSM
          5305]
 gi|324967982|gb|ADY58760.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM
          5305]
          Length = 109

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST----INIDNMIILAHTLDTPL 77
          F    R +R+   L+Q+++  + G   ++IS++E  K         + +  LA  LD   
Sbjct: 3  FGERLRELRQAKNLSQRDLAEQVGVNFTYISKIENEKLDFAQFPGEELIRKLAKALDADE 62

Query: 78 WKLL 81
           +LL
Sbjct: 63 DELL 66


>gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 272

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     +    RKE   TQ+E+  + G +   +S+ E   +  ++  +  L  TL+  + 
Sbjct: 2  KEKLARSIAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSID 61

Query: 79 KLL 81
          KLL
Sbjct: 62 KLL 64


>gi|239942022|ref|ZP_04693959.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          15998]
          Length = 268

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    +    +++
Sbjct: 1  MRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEVEDVRIV 56


>gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM
          20213]
 gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM
          20213]
          Length = 161

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  LTQ +  ++    Q  +S  E G +  +ID + +++   + P+ +
Sbjct: 1  MSIGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|168699333|ref|ZP_02731610.1| hypothetical protein GobsU_07427 [Gemmata obscuriglobus UQM 2246]
          Length = 76

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLW 78
          +   N + +R +   TQ ++   +G   S IS++E+G+  +  ++  ++ LA+ L   + 
Sbjct: 11 VLAKNAKRMRGDR--TQADLAEASGLTVSQISQIESGRPENPPSVRTLVALANGLGVDVS 68

Query: 79 KLLK 82
          +LLK
Sbjct: 69 ELLK 72


>gi|149007465|ref|ZP_01831108.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP18-BS74]
 gi|168484288|ref|ZP_02709240.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00]
 gi|168492034|ref|ZP_02716177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04]
 gi|147761037|gb|EDK68006.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP18-BS74]
 gi|172042463|gb|EDT50509.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00]
 gi|183573657|gb|EDT94185.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04]
 gi|332071967|gb|EGI82455.1| transcriptional activator [Streptococcus pneumoniae GA17545]
 gi|332199415|gb|EGJ13492.1| transcriptional activator [Streptococcus pneumoniae GA47368]
          Length = 303

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|159037281|ref|YP_001536534.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157916116|gb|ABV97543.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + R  R+ A  +   +   T F++ ++S +ETG+     D +    H L  P+
Sbjct: 19 LGAHLRAAREAAGHSLAGMAALTHFSKPYLSLVETGRRQATPDIVERYEHALGVPI 74


>gi|327402685|ref|YP_004343523.1| helix-turn-helix domain-containing protein [Fluviicola taffensis
          DSM 16823]
 gi|327318193|gb|AEA42685.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823]
          Length = 86

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    +  RK    TQ ++  +       IS LE G+ + +I  +  LA      L +L
Sbjct: 9  LFGEFIKQKRKSLNWTQNDLAEKINNDFQNISRLERGEVSPSIFWISELAKGFGCSLGEL 68

Query: 81 LK 82
          + 
Sbjct: 69 MT 70


>gi|317490202|ref|ZP_07948690.1| hypothetical protein HMPREF1023_02390 [Eggerthella sp. 1_3_56FAA]
 gi|316910696|gb|EFV32317.1| hypothetical protein HMPREF1023_02390 [Eggerthella sp. 1_3_56FAA]
          Length = 114

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M    ++E       L +R+     +    +R    L+Q  +    G     IS LE G 
Sbjct: 11 MSEMSKNEKMARKDPLVQRLSADLGSRLLEVRTSEGLSQNTLAEMVGTKHPRISNLEGGL 70

Query: 59 STINIDNMIILAHTLDTPLWKLL 81
            + + +++ LA  LD    +LL
Sbjct: 71 VDVRLSDIVKLARALDVNPGELL 93


>gi|311896864|dbj|BAJ29272.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 128

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+ + +++    G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGEYIREQRRSAQYSLRQLAEVAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAETL 67


>gi|304379184|ref|ZP_07361927.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
 gi|304342230|gb|EFM08126.1| helix-turn-helix domain protein [Staphylococcus aureus subsp.
          aureus ATCC BAA-39]
          Length = 238

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKIFELAKALNV 57


>gi|291525427|emb|CBK91014.1| Helix-turn-helix [Eubacterium rectale DSM 17629]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R +  LTQ+++      +  +I ++E G+S I++  +  + +TL     +L 
Sbjct: 11 GKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANELF 69


>gi|270156583|ref|ZP_06185240.1| helix-turn-helix domain protein [Legionella longbeachae D-4968]
 gi|289164956|ref|YP_003455094.1| hypothetical protein LLO_1621 [Legionella longbeachae NSW150]
 gi|269988608|gb|EEZ94862.1| helix-turn-helix domain protein [Legionella longbeachae D-4968]
 gi|288858129|emb|CBJ11995.1| hypothetical protein LLO_1621 [Legionella longbeachae NSW150]
          Length = 106

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD---TP 76
          M F +   ++R   ++TQ E+  R G ++ ++S++E  +  + I     ++  L     P
Sbjct: 22 MTFGSLIHSLRISDEITQVELAKRVGVSKQFLSDVEHNRKDVGIAFAKKISDALGYSIEP 81

Query: 77 LWKLL 81
          L +LL
Sbjct: 82 LIELL 86


>gi|268595110|ref|ZP_06129277.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
 gi|268548499|gb|EEZ43917.1| transcriptional regulator [Neisseria gonorrhoeae 35/02]
          Length = 229

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  RK   L+Q+ +      +QS I+ LE+G       N+  LA  LD   + L
Sbjct: 1  MKEARKNKNLSQENLAKLAEVSQSTIAALESG-RNKKATNIAKLAKILDVSAFWL 54


>gi|238923321|ref|YP_002936836.1| hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656]
 gi|238874995|gb|ACR74702.1| Hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R +  LTQ+++      +  +I ++E G+S I++  +  + +TL     +L 
Sbjct: 11 GKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANELF 69


>gi|229103032|ref|ZP_04233721.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
 gi|228680447|gb|EEL34635.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28]
          Length = 114

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    +++RK   L Q+++ +    ++S I+  E G S  ++  +  LA   +  L  L
Sbjct: 4  FSETLKSLRKSRSLRQEDLAHELNLSRSQINNYENGFSEPDLTTLFRLASYFNVTLDVL 62


>gi|261366533|ref|ZP_05979416.1| transcriptional regulator, Cro/CI family [Subdoligranulum
          variabile DSM 15176]
 gi|282571346|gb|EFB76881.1| transcriptional regulator, Cro/CI family [Subdoligranulum
          variabile DSM 15176]
          Length = 124

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK  KLTQ+E+ + +  +   +   E G+   + + +      L+  L  L+
Sbjct: 7  LGRRIQKARKVKKLTQQELADLSHVSLKHVQSCERGEKNPSFEVLRAFGKVLNLSLDSLM 66


>gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 103

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +N RKE  L+   + ++   +Q  IS  E G + I ID+++ +A  L  P+   
Sbjct: 6  IIGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMCPIEWF 65

Query: 81 LK 82
           K
Sbjct: 66 FK 67


>gi|220936034|ref|YP_002514933.1| hypothetical protein Tgr7_2873 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997344|gb|ACL73946.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 101

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R  R +  + Q+ + +  G  +S + ++E G+    +  ++ +A  L      L+
Sbjct: 25 FGAVVREERTDQGIAQETLAHLAGIERSHMGKIERGEHIPTLPLILKIARALKCSSAHLM 84


>gi|167758281|ref|ZP_02430408.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC
          35704]
 gi|167664178|gb|EDS08308.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC
          35704]
          Length = 67

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IR+E  L Q+E+ +    ++  I  LE G+   +I     +A      +  + 
Sbjct: 3  NRLEEIRREHGLKQEELADILEVSRQTIGSLENGRYNPSIILAFKIARYFHRNIEDIF 60


>gi|281356298|ref|ZP_06242790.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
 gi|281316990|gb|EFB01012.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
          Length = 193

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 16 LRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +RE++I      +  RKE K+T + + +RTG     +S++E  ++  ++  ++ +A  L+
Sbjct: 1  MREQLIALGTRIKMARKERKMTLQTLADRTGLTAGLLSKIENFRTIPSLPVLVDIAAALE 60

Query: 75 TPLWKLLK 82
          T L +  +
Sbjct: 61 TDLAEFFR 68


>gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89]
 gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1]
 gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88]
 gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989]
 gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89]
 gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1]
 gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3]
 gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989]
 gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88]
 gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034]
 gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146]
 gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C]
 gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252]
 gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167]
          Length = 216

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R  RKE K+ Q  +    G +   IS+ E  ++  N +N++ LA+ L      
Sbjct: 4  QLMGERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDY 63

Query: 80 LLK 82
          L+K
Sbjct: 64 LMK 66


>gi|56808631|ref|ZP_00366358.1| COG1396: Predicted transcriptional regulators [Streptococcus
          pyogenes M49 591]
          Length = 195

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLNQLIK 63


>gi|145638927|ref|ZP_01794535.1| possible transcriptional regulator [Haemophilus influenzae
          PittII]
 gi|145271899|gb|EDK11808.1| possible transcriptional regulator [Haemophilus influenzae
          PittII]
 gi|309750896|gb|ADO80880.1| Putative DNA-binding protein [Haemophilus influenzae R2866]
          Length = 127

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  +L+Q+++  +   + S  +++E G++ +  D ++ +A   +  L  L+
Sbjct: 6  KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62


>gi|329725145|gb|EGG61635.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21189]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              N  R  R +  LTQ ++  +    ++ IS  ETG  T   D++  +AH L+  +  
Sbjct: 8  KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 94

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR++   +Q +I    G  +  IS  E  K+ ++  ++I LA      L +L
Sbjct: 1  MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTILDSASLIRLADFYQISLDEL 60


>gi|325918018|ref|ZP_08180182.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325535782|gb|EGD07614.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 128

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQ----SWISELETGKSTINIDNMIILAHTLD 74
          R +F       R+   L+Q+ + +R G  +    S I+  E   + I  DN+  LA  LD
Sbjct: 7  RALFAARLAQARQLRGLSQRALGDRMGLGKEKGSSRINRYEHQVTAIGFDNLNTLAQVLD 66

Query: 75 TPLWKLL 81
           P+  LL
Sbjct: 67 VPVAYLL 73


>gi|325298681|ref|YP_004258598.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324318234|gb|ADY36125.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I     +++R   +++  E+  RTG     I  +E      ++  ++ +A  L   L
Sbjct: 6  IIGEKIKDLRTAKEISIDELAERTGLTAGQIERIENNIDIPSLAPLLKIARALGVRL 62


>gi|302531776|ref|ZP_07284118.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4]
 gi|302440671|gb|EFL12487.1| hypothetical protein SSMG_08157 [Streptomyces sp. AA4]
          Length = 505

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80
               R  R+   ++Q+ + + +G +QS++S LE+G   +     +   A  L   + +L
Sbjct: 115 GARLRQAREARGISQQALADESGISQSFLSRLESGARLLTGRGLLETFAEALGCSVAEL 173


>gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
          Length = 135

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+ + TQ+++  +   ++S IS+ E G    ++ ++  L    +     LL
Sbjct: 4  LGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLL 63


>gi|295093301|emb|CBK82392.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 255

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R +  L+Q ++  +    +  +S  E G++  N D + +L+  LD  +  LL
Sbjct: 9  ELRTKRGLSQDDLAEKVMVTRQAVSRWENGETVPNTDTLKLLSKELDVSINTLL 62


>gi|282864596|ref|ZP_06273651.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282560535|gb|EFB66082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R+    T   +   TG   S +S +ETG+    ++ +  LA      L +L
Sbjct: 14 GPRLRAARERHGATLAGVSCATGVPPSTLSRIETGRRRPTLEVLTRLAKEYGASLDEL 71


>gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp.
          lactis KF147]
 gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family
          [Lactococcus lactis subsp. lactis KF147]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             +  R++  ++QKE+ +  G  Q  +S  E G    +   + +++  L+ P   L
Sbjct: 2  ERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYL 58


>gi|239944946|ref|ZP_04696883.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          15998]
 gi|239991410|ref|ZP_04712074.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          11379]
 gi|291448407|ref|ZP_06587797.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
 gi|291351354|gb|EFE78258.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998]
          Length = 282

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  KL+Q ++  R   +   +S +ETG++  + + ++ LA  LD PL  
Sbjct: 24 LRAWRRRRKLSQLDLALRADSSTRHLSCVETGRARPSRELVLRLAEHLDIPLRD 77


>gi|83590550|ref|YP_430559.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC
          39073]
 gi|83573464|gb|ABC20016.1| transcriptional regulator, XRE family [Moorella thermoacetica
          ATCC 39073]
          Length = 67

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +       +R+E  L+Q ++ +  G  QS  + +E G+     + M  LA      + 
Sbjct: 3  RFMRNEKLYQLRRERGLSQVKVASAVGITQSAYAMIERGQRYPRKETMKKLADYFGLTVD 62

Query: 79 KLL 81
          +L 
Sbjct: 63 ELF 65


>gi|42519281|ref|NP_965211.1| hypothetical protein LJ1411 [Lactobacillus johnsonii NCC 533]
 gi|41583569|gb|AAS09177.1| hypothetical protein LJ_1411 [Lactobacillus johnsonii NCC 533]
          Length = 129

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80
               +  R+  ++TQ+++   +  + ++IS++E  G   I+I  +  +A  L T +  L
Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDAIAKALQTSVITL 71

Query: 81 L 81
          +
Sbjct: 72 I 72


>gi|66045941|ref|YP_235782.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae B728a]
 gi|63256648|gb|AAY37744.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P R+           +  M      + +R+  KL+Q+E+  R+G   + IS +E  + + 
Sbjct: 4  PLRRGAASFTGYLSHKATMDTGARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSP 63

Query: 62 NIDNMIILAHTLDTPLWKLLK 82
          +I ++  L   +   L     
Sbjct: 64 SISSLKKLLEGIPMTLADFFT 84


>gi|15896492|ref|NP_349841.1| LacI/xre family transcriptional regulator [Clostridium
          acetobutylicum ATCC 824]
 gi|15026320|gb|AAK81181.1|AE007820_7 Predicted transcriptional regulator, lacI/xre family [Clostridium
          acetobutylicum ATCC 824]
          Length = 243

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR++AKL+QK+   + G A+ +I+E+E G+  +    +  +      
Sbjct: 26 GEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVVTESLIHRIKKLYGK 78


>gi|20091114|ref|NP_617189.1| transcriptional regulator [Methanosarcina acetivorans C2A]
 gi|19916214|gb|AAM05669.1| transcriptional regulator, Hth-3 family [Methanosarcina
          acetivorans C2A]
          Length = 79

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    LTQ+ +    G  +  +  LE GK   ++     +A  LDT L +L 
Sbjct: 15 RIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDELF 71


>gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P]
 gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P]
          Length = 257

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N +++R   KLTQ+ +       +S IS  E  +S+  ID +I  +     P+  ++K
Sbjct: 6  KNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPIDIIIK 64


>gi|319649461|ref|ZP_08003617.1| hypothetical protein HMPREF1013_00221 [Bacillus sp. 2_A_57_CT2]
 gi|317398623|gb|EFV79305.1| hypothetical protein HMPREF1013_00221 [Bacillus sp. 2_A_57_CT2]
          Length = 87

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          M F    +  R+ A LTQ+EI  +   ++S IS+ ET K T+++  +I  A  
Sbjct: 1  MTFGAVLKACRERAGLTQEEIAEKLHRSRSCISKFETDKKTLDVATLIKWADV 53


>gi|294631570|ref|ZP_06710130.1| regulatory protein [Streptomyces sp. e14]
 gi|292834903|gb|EFF93252.1| regulatory protein [Streptomyces sp. e14]
          Length = 282

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S +    R       R++R +A LT  E+  R G+     S LE G++    D++     
Sbjct: 6  SSSAQEARERVARRLRDLRADAGLTGTELAVRCGWTHPKTSRLENGRTPPTPDDIRRWCQ 65

Query: 72 TLDTP 76
            D  
Sbjct: 66 ACDAE 70


>gi|317050739|ref|YP_004111855.1| helix-turn-helix domain-containing protein [Desulfurispirillum
          indicum S5]
 gi|316945823|gb|ADU65299.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 221

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            +L+ +++    G   S++ ++ETGK  +N+  +  LA  L+  +  L  P
Sbjct: 17 SKRLSSEKLGEAVGIEGSYVRQIETGKRKLNLIILERLASALEVNIAALFDP 68


>gi|270261258|ref|ZP_06189531.1| putative DNA-binding protein [Serratia odorifera 4Rx13]
 gi|270044742|gb|EFA17833.1| putative DNA-binding protein [Serratia odorifera 4Rx13]
          Length = 154

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            R +R E   +Q+++    G +   +  +E G+   ++D +  +A  L   +  L
Sbjct: 5  RIRQLRLEKGWSQEQLATIAGLSTRTVQRIENGEQ-ASLDTLTAIAAALGLLVSDL 59


>gi|257067792|ref|YP_003154047.1| putative transcriptional regulator [Brachybacterium faecium DSM
          4810]
 gi|256558610|gb|ACU84457.1| predicted transcriptional regulator [Brachybacterium faecium DSM
          4810]
          Length = 190

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R+E +L+   +  R+  ++  ++++E G++  ++  +  +A  L T    
Sbjct: 11 EQLGERIRAARQELELSVGALAERSDVSRRMLTQIELGQANPSVAILDRIAAGLGTTFAA 70

Query: 80 LL 81
          L+
Sbjct: 71 LM 72


>gi|229009876|ref|ZP_04167096.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048]
 gi|228751494|gb|EEM01300.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048]
          Length = 83

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R    ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 14 QVRRNGVKNQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGT 73

Query: 76 PLWKLL 81
           + KL 
Sbjct: 74 TVDKLF 79


>gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 114

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R++A L+Q+++    G +   I + E G +T+NI  +  +A  L   +    
Sbjct: 14 IRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTTLNIIKLQHIAAALKVAVTDFF 69


>gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895]
 gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R+    +  E+  R G +++ I ++E G+S+     +  L+      +  L+
Sbjct: 15 RIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLI 71


>gi|148380348|ref|YP_001254889.1| DNA-biding phage protein [Clostridium botulinum A str. ATCC 3502]
 gi|148289832|emb|CAL83940.1| putative DNA-biding phage protein [Clostridium botulinum A str.
          ATCC 3502]
          Length = 83

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N    RKE  ++Q ++  +   +QS++S +E    +  +  +  +A  LD     L++
Sbjct: 6  NVEEYRKENFISQNKLAKKINISQSYLSSVEREIKSPTLRMLYRIAEELDVCPRLLIR 63


>gi|332533207|ref|ZP_08409074.1| repressor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037286|gb|EGI73741.1| repressor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RKEA L+Q+++ +    ++  IS +ET + T ++   + +A   +T +  L 
Sbjct: 3  NKIAKYRKEAGLSQQDLADLIAVSRKTISTVETARFTPSVIIALKIAKHFNTSVESLF 60


>gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC
          3773]
          Length = 183

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF N  +  RK+  LTQ ++ N+   +   IS  ETGK+  +I+N+I+++  L+  L  
Sbjct: 1  MIFHNLIKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSLDD 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis
          VMC66]
 gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis
          VMC66]
          Length = 169

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 4  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 63


>gi|320528557|ref|ZP_08029714.1| helix-turn-helix protein [Solobacterium moorei F0204]
 gi|320131143|gb|EFW23716.1| helix-turn-helix protein [Solobacterium moorei F0204]
          Length = 145

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + IR   KLTQKE+   +G   + I   E G  + N + +  +A  L+  +  
Sbjct: 1  MISGKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNKEQLRKIADALNCDIST 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|319938413|ref|ZP_08012808.1| hypothetical protein HMPREF9488_03644 [Coprobacillus sp. 29_1]
 gi|319806501|gb|EFW03165.1| hypothetical protein HMPREF9488_03644 [Coprobacillus sp. 29_1]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          + Q+E+ +R G     +S++E G +    D +  +   LD    +LL
Sbjct: 1  MKQQELADRIGINMQSLSKIERGVNYPTFDTLEKIMEVLDVTPNELL 47


>gi|307325002|ref|ZP_07604207.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889500|gb|EFN20481.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N R  R  A L+  E+  R   ++  +  LE  +   N   ++ LA TL   +  L+
Sbjct: 11 LAYNVRTARTRAGLSLDELGRRAKVSKGSLFALEKAQGNPNFATLVRLADTLGVSVSALM 70

Query: 82 K 82
          +
Sbjct: 71 E 71


>gi|300782025|ref|YP_003762316.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
 gi|299791539|gb|ADJ41914.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
          U32]
          Length = 461

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 3  RRKRDEPHLSDAILRERMIFVNN----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          R+    P  +      R    +        + ++  ++Q++I   TG +QS +SE+  G+
Sbjct: 12 RQSHAVPADAWEQPEMRTALASREISAVYRLLRKHGVSQRQIAAMTGQSQSEVSEILKGR 71

Query: 59 STINIDNMIILAHTLDTP 76
            +  D +  +A  L  P
Sbjct: 72 QVMAYDVLTRIADGLGVP 89


>gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 96

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  RKE  L+ + +  + G +Q  +S  E G + I ++ +  +   L+ P+    
Sbjct: 8  GKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIKVNTLYSITQALNIPIDSFF 66


>gi|302522576|ref|ZP_07274918.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302431471|gb|EFL03287.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 279

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMII 68
           +     R +F +  +  RK A LTQ+++    G++   IS +E G+       +D    
Sbjct: 10 PEPSETLR-VFGSVVKAFRKRAGLTQEQLAEGLGYSVDMISSIEQGRRMPQPEFVDATER 68

Query: 69 LAHTLDT 75
              +  
Sbjct: 69 ELDAVGM 75


>gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis
          serovar sotto str. T04001]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N + +R +  L+QKE+    G +   +S  E G     +  +  +A       +K
Sbjct: 1  MSIGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIAD-----HFK 55

Query: 80 LLK 82
          +LK
Sbjct: 56 ILK 58


>gi|225375005|ref|ZP_03752226.1| hypothetical protein ROSEINA2194_00628 [Roseburia inulinivorans
          DSM 16841]
 gi|225213077|gb|EEG95431.1| hypothetical protein ROSEINA2194_00628 [Roseburia inulinivorans
          DSM 16841]
          Length = 105

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +F    R  R++ K+TQ+E+  R       + E+E  KS    + + +++  +D  L
Sbjct: 6  LFAQKLREKREQKKITQRELAERLNMCTRTVIEIEKCKSNPKFETVALISEEMDISL 62


>gi|222152254|ref|YP_002561429.1| DNA-binding protein [Streptococcus uberis 0140J]
 gi|222113065|emb|CAR40420.1| putative DNA-binding protein [Streptococcus uberis 0140J]
          Length = 311

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               + +RK+ ++T++ +  + +  +   ++ +E+G+S  ++   + +A  L  PL   
Sbjct: 4  LGLKMKELRKKKQMTREALCGDESELSVRQLARIESGQSNPSLAKALFIAKKLGVPLSDF 63

Query: 81 LKP 83
          + P
Sbjct: 64 VNP 66


>gi|182438568|ref|YP_001826287.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178467084|dbj|BAG21604.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
          Length = 283

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R+ A LTQ+E+ +     +S I+ +E G+   + ++   L   L T
Sbjct: 5  YGEWLKAQREAAGLTQQELADLAFMTRSHIAHIEAGRRMPSGEDAQRLDRALGT 58


>gi|153805880|ref|ZP_01958548.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185]
 gi|149130557|gb|EDM21763.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R++  +T +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLREDKSITIEELAQRSGLAMEQIERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic
          archaeon RC-I]
 gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic
          archaeon RC-I]
          Length = 68

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N+ + +R    +TQ+++  + G ++  I  +E  K   ++     LA      +  + +
Sbjct: 3  NHLKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYDPSLSLAFRLARCFGVKIEDIFE 61


>gi|116617234|ref|YP_817605.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|227432765|ref|ZP_03914730.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
 gi|116096081|gb|ABJ61232.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides
          subsp. mesenteroides ATCC 8293]
 gi|227351479|gb|EEJ41740.1| XRE family transcriptional regulator [Leuconostoc mesenteroides
          subsp. cremoris ATCC 19254]
          Length = 195

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +R+   ++  ++   TG ++S IS+ E G++ I + +MI +   +   L  L
Sbjct: 14 LGRLIRGMREARGVSVNDLVRATGLSRSMISKFERGQTDIQLSSMIKIFSAMSLTLDDL 72


>gi|329925525|ref|ZP_08280399.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
 gi|328939808|gb|EGG36148.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5]
          Length = 68

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E        R  RK   LTQ+E+  R+G + + +  +E G        +  +A  L+  L
Sbjct: 2  ENKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGNRRAEEQMLAQIADVLEITL 61

Query: 78 WKL 80
           +L
Sbjct: 62 QEL 64


>gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK115]
          Length = 168

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|320155761|ref|YP_004188140.1| hypothetical protein VVM_01799 [Vibrio vulnificus MO6-24/O]
 gi|319931073|gb|ADV85937.1| hypothetical protein VVMO6_00915 [Vibrio vulnificus MO6-24/O]
          Length = 76

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  + R +  L+  +   + GF++S++ ++E     I ++ +  LA  LD  +  LL
Sbjct: 9  AQNIIDKRTKIGLSSSDASIKAGFSRSYLGKVERDGVRITVEKLYQLARVLDCEVADLL 67


>gi|313887651|ref|ZP_07821333.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312846260|gb|EFR33639.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 63

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ + IR +  L Q+E+ +    ++  ++ +E  K    ++    LA  L+T + KL 
Sbjct: 3  NHIKEIRGQKGLLQQELADICNVSRQTVNAIENNKYDPTLELAFKLAAALETTVDKLF 60


>gi|302545983|ref|ZP_07298325.1| XRE family transcriptional regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302463601|gb|EFL26694.1| XRE family transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 524

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTP 76
           + +         R     TQ+ +    G +  W++++E G+     ID +  LA  L  P
Sbjct: 119 DHLSIGERIAFYRNRRGYTQEVLAGLVGHSTDWLAKVERGRRKPPRIDKLGELARVLRVP 178

Query: 77  LWKLL 81
           L  L+
Sbjct: 179 LGDLI 183


>gi|291301709|ref|YP_003512987.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290570929|gb|ADD43894.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 397

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81
              R  R+  ++TQ  +    G +   + +LE G+     ID+++ +A+ LD P+  L+
Sbjct: 7  GKVIRGGRQRRRMTQAALAESAGVSIDLVRKLEQGQRNSARIDSLMAIANALDMPVGDLI 66


>gi|320006669|gb|ADW01519.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 285

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R +R    L+Q ++  R G  Q  +S +E+ +S    + ++ LA  L+  L +
Sbjct: 29 FPRALRELRTRRHLSQLDLALRAGTTQRHLSFIESRRSDPGRNMVVRLAEALELSLRE 86


>gi|257891593|ref|ZP_05671246.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257827953|gb|EEV54579.1| transcriptional regulator [Enterococcus faecium 1,231,410]
          Length = 147

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 29/57 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +R +     ++ R E  ++Q ++    G ++ +++++E G  T +I  M  +   L+
Sbjct: 3  QRNLDYRLLKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTASIKTMRKIFDQLE 59


>gi|254719247|ref|ZP_05181058.1| hypothetical protein Bru83_06846 [Brucella sp. 83/13]
 gi|265984243|ref|ZP_06096978.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306837996|ref|ZP_07470854.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653]
 gi|264662835|gb|EEZ33096.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306406920|gb|EFM63141.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653]
          Length = 478

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            ++      R IR++ + TQ     R G + S+++++E  +  ++   ++ LA     
Sbjct: 3  PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQI 61


>gi|228943047|ref|ZP_04105548.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228955929|ref|ZP_04117866.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228976620|ref|ZP_04137063.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228783089|gb|EEM31225.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228803756|gb|EEM50438.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228816632|gb|EEM62756.1| HTH-type transcriptional regulator SinR [Bacillus thuringiensis
          serovar berliner ATCC 10792]
          Length = 60

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82
           R  R +   TQ ++  ++G  Q  IS++E+G+       N+  +A  L     +L+K
Sbjct: 2  IREARLQKGWTQLDLAKKSGVPQPTISQIESGERKYPTYQNIKKIAEALGIKTEELMK 59


>gi|228936772|ref|ZP_04099562.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|229199177|ref|ZP_04325858.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293]
 gi|228584283|gb|EEK42420.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293]
 gi|228822891|gb|EEM68733.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 79

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|226328868|ref|ZP_03804386.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198]
 gi|225202054|gb|EEG84408.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     +  RKE   T  +I  + G +Q   S  E G + I++  +++LA+ L+TP++
Sbjct: 20 LVGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERGMNKIDLSYLVLLANYLNTPIY 77


>gi|145641622|ref|ZP_01797199.1| possible transcriptional regulator [Haemophilus influenzae R3021]
 gi|145273669|gb|EDK13538.1| possible transcriptional regulator [Haemophilus influenzae
          22.4-21]
          Length = 127

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  +L+Q+++  +   + S  +++E G++ +  D ++ +A   +  L  L+
Sbjct: 6  KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNVSLSDLV 62


>gi|81427688|ref|YP_394685.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei
          23K]
 gi|78609327|emb|CAI54373.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei
          subsp. sakei 23K]
          Length = 189

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R +  LTQ+ + ++   ++  IS  E GK+  ++  ++ +++  D  L  +
Sbjct: 1  MLATTLKKRRIDLHLTQQAVADQLHTSRQTISNWENGKNYPDVPMLVAISNLYDLSLDDM 60

Query: 81 LK 82
          LK
Sbjct: 61 LK 62


>gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 133

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +RKE  +TQ E+  + G +Q  +   E G+  I + ++  +A      L +
Sbjct: 24 MALGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRRRIKVSSLPSVAQIFSVSLEE 83

Query: 80 LL 81
          + 
Sbjct: 84 VF 85


>gi|77462735|ref|YP_352239.1| MerR family transcriptional regulator [Rhodobacter sphaeroides
          2.4.1]
 gi|126461627|ref|YP_001042741.1| hypothetical protein Rsph17029_0858 [Rhodobacter sphaeroides ATCC
          17029]
 gi|221638596|ref|YP_002524858.1| MerR family transcriptional regulator [Rhodobacter sphaeroides
          KD131]
 gi|332557618|ref|ZP_08411940.1| Transcriptional regulator, MerR family protein [Rhodobacter
          sphaeroides WS8N]
 gi|77387153|gb|ABA78338.1| transcriptional regulator, MerR family [Rhodobacter sphaeroides
          2.4.1]
 gi|126103291|gb|ABN75969.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC
          17029]
 gi|221159377|gb|ACM00357.1| Transcriptional regulator, MerR family [Rhodobacter sphaeroides
          KD131]
 gi|332275330|gb|EGJ20645.1| Transcriptional regulator, MerR family protein [Rhodobacter
          sphaeroides WS8N]
          Length = 461

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R +  LTQK    R G +  +++++E     ++   ++ LA      +
Sbjct: 3  QKLYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDV 62

Query: 78 WKL 80
           KL
Sbjct: 63 TKL 65


>gi|322386548|ref|ZP_08060175.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus
          ATCC 51100]
 gi|321269467|gb|EFX52400.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus
          ATCC 51100]
          Length = 136

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           ++IR+  +LTQ+ +  R   ++S I+  E+GK   +I N+I ++   D  L +L+K
Sbjct: 7  LKDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQLIK 63


>gi|304388922|ref|ZP_07370969.1| DNA-binding protein [Neisseria meningitidis ATCC 13091]
 gi|304337056|gb|EFM03243.1| DNA-binding protein [Neisseria meningitidis ATCC 13091]
          Length = 126

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|294023754|ref|YP_003547073.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292677534|dbj|BAI99050.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP R   +    + + + +++        RK  ++TQ ++  + G    W+ E+E+G   
Sbjct: 1  MPLRSTTQVTEPERLGQIKLLSGKIIEERRKHVRMTQSQLAAKVGIGVRWLREIESGNPK 60

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
            I+N    A  L      L+ P
Sbjct: 61 STIENHFRCAFALGMAASHLIFP 83


>gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium
          prausnitzii A2-165]
 gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium
          prausnitzii A2-165]
          Length = 109

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N +  R++A  TQ  +    G   + +S +E G S I+++ +  L   L     +++
Sbjct: 12 GGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQRLCRLLGISADRII 70


>gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3
          str. Ether]
 gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
 gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
          Length = 182

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|239991923|ref|ZP_04712587.1| putative DNA-binding protein [Streptomyces roseosporus NRRL
          11379]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R+ R++ +++Q E+  R   +   IS +ETG+S  + D ++ LA  LD P+ +
Sbjct: 10 LRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEHLDVPVRE 63


>gi|237747834|ref|ZP_04578314.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
 gi|229379196|gb|EEO29287.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
          Length = 122

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R +R   ++TQK++    G  Q+ +SE+E G   I++D    +    +  
Sbjct: 64  GMALRGLRAREEITQKQLAAVLGIQQTRVSEMENGVRPISVDMAKRIGKAYNIS 117


>gi|187939911|gb|ACD39048.1| transcription regulator protein [Pseudomonas aeruginosa]
          Length = 97

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  +       R +RK   L+Q+   + +  +++++S LE    +  +  +  L   ++ 
Sbjct: 1  MTAKHSLATAIRTVRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTLHKLTELCEVMEV 58

Query: 76 PLWKLLK 82
              LL 
Sbjct: 59 HPLTLLT 65


>gi|229917672|ref|YP_002886318.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b]
 gi|229469101|gb|ACQ70873.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+ K+TQ ++       +S +S +E GK+  ++ ++  LA  LD  + +L
Sbjct: 1  MIGERIKTLRKQKKMTQTQLAEGI-VTKSMLSMIENGKAEASMRSLRELASRLDVSMQQL 59

Query: 81 LK 82
          L 
Sbjct: 60 LT 61


>gi|70731399|ref|YP_261140.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68345698|gb|AAY93304.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  R  A  +  E+  R   A+S +S+LE G    +I+ +  LA  +   + + 
Sbjct: 16 LLAMAIKRERLNAGFSVSELAKRAAVAKSTLSQLEAGLGNPSIETLWALAQAMGLQVTRF 75

Query: 81 LK 82
           +
Sbjct: 76 FQ 77


>gi|57239584|ref|YP_180720.1| putative transcriptional regulator [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579573|ref|YP_197785.1| putative transcriptional regulator [Ehrlichia ruminantium str.
           Welgevonden]
 gi|38098396|gb|AAR10929.1| hypothetical transcriptional regulator [Ehrlichia ruminantium]
 gi|57161663|emb|CAH58593.1| putative transcriptional regulator [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418199|emb|CAI27403.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 201

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           M  +K   P  S     +        +  R    ++Q ++ N+ G     + + E G + 
Sbjct: 45  MSGQKSTTPK-SRPHPVD-ECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNR 102

Query: 61  INIDNMIILAHTLDTPLWKLL 81
           I I  +  LA  L+  +  ++
Sbjct: 103 IVISRLYQLASVLNVEVRDIM 123


>gi|58699142|ref|ZP_00373967.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|58534342|gb|EAL58516.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
          Length = 312

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 16 RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 75

Query: 79 KLL 81
           L+
Sbjct: 76 DLI 78



 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL
Sbjct: 173 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISITDLL 231


>gi|315925644|ref|ZP_07921854.1| XRE family transcriptional regulator [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315621185|gb|EFV01156.1| XRE family transcriptional regulator [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 235

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N R  RK+  LT   + +    ++S +S+ E G  +I+I+ +  LA  L   + +LL
Sbjct: 9  GHNIRIYRKKNGLTLDALSDLVFKSKSALSKYENGDISIDIETLYELAEALHIHVEQLL 67


>gi|315652878|ref|ZP_07905850.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
 gi|315484872|gb|EFU75282.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
          Length = 91

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            + R+ A L+Q+++   +   QS I+ +E G    +I+ +  LA  L   L
Sbjct: 36 VAHARQSAGLSQRQLAKISHVPQSTIARIECG-RNTSIETINKLALALGKKL 86


>gi|306833638|ref|ZP_07466765.1| Cro/CI family transcriptional regulator [Streptococcus bovis ATCC
          700338]
 gi|304424408|gb|EFM27547.1| Cro/CI family transcriptional regulator [Streptococcus bovis ATCC
          700338]
          Length = 74

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++   TQK +  +  F  S  +++E G+  ++ D +I L++  +     LL
Sbjct: 3  RRLRDLREDNDFTQKYVAEKLSFTHSAYAKIERGERILSADVIIKLSNLYNVSTDYLL 60


>gi|295189233|gb|ADF83420.1| putative transcription regulator [Lactobacillus phage LBR48]
          Length = 127

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
           ++  F +  + +R E   T ++   +   + S+ S++E GK        +  +A  L  
Sbjct: 3  VDKTKFGSQLKKLRNEKGFTVRQAALQANLSNSFWSQVENGKRNIPKPITLEKMAKGLRV 62

Query: 76 PLWKLL 81
             ++ 
Sbjct: 63 SKEQIF 68


>gi|290476510|ref|YP_003469415.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004]
 gi|289175848|emb|CBJ82651.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004]
          Length = 92

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M+     +  RKE  +T  E+ +R   +Q  +S  E G + I++++++ ++  L TP
Sbjct: 5  MLVGKRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTP 61


>gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US]
 gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US]
          Length = 68

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +R E  ++Q ++    G  Q  +S  ETG+ST     M  +A         + 
Sbjct: 4  KLKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRPPMMQKIADYFGVSKDDIF 60


>gi|261400347|ref|ZP_05986472.1| helix-turn-helix protein [Neisseria lactamica ATCC 23970]
 gi|269209981|gb|EEZ76436.1| helix-turn-helix protein [Neisseria lactamica ATCC 23970]
          Length = 111

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                    RK + LTQ ++  R   +   +S LE G   + ++ ++ LA         
Sbjct: 8  QTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIFGCETAD 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|255025462|ref|ZP_05297448.1| transcriptional repressor, putative [Listeria monocytogenes FSL
          J2-003]
          Length = 68

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N R+IR++  +TQ+++ +    +Q+  S+ ETGK       +I +A   D  +  LL
Sbjct: 4  KNIRSIREDNDMTQQQMADLLNVSQNTYSQYETGKIEWTASTLIKIADYFDVSIDYLL 61


>gi|225570227|ref|ZP_03779252.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM
          15053]
 gi|225161022|gb|EEG73641.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM
          15053]
          Length = 195

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R++ K++Q+E+  +   ++  +S  ET KS  ++ ++IIL++  +  L   +K
Sbjct: 4  GLRIKKLREQQKISQEELALKIFVSRQTVSNWETNKSCPDVKSLIILSNVFNVSLDSFIK 63


>gi|224542424|ref|ZP_03682963.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524655|gb|EEF93760.1| hypothetical protein CATMIT_01606 [Catenibacterium mitsuokai DSM
          15897]
          Length = 117

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQS----WISELETGKSTINIDNMIILAHTL 73
           R IF    +  R++A LTQKE+    G  Q      I+  E G    ++     +A +L
Sbjct: 8  ARSIFAQRLKAAREDAGLTQKELGMSVGLPQEAAAVRINRYEKGVHDADLATARRIAQSL 67

Query: 74 DTPLWKL 80
            PL  L
Sbjct: 68 GVPLAFL 74


>gi|170781611|ref|YP_001709943.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169156179|emb|CAQ01321.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 102

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R +   T +++ ++   A  ++SE+E G+   + + +  +A  LDTP+ 
Sbjct: 5  RQEIGDVLRDFRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVADALDTPIS 64

Query: 79 KLLK 82
           +++
Sbjct: 65 VIMR 68


>gi|168487127|ref|ZP_02711635.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00]
 gi|183569965|gb|EDT90493.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00]
          Length = 303

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|225165113|ref|ZP_03727276.1| putative transcriptional regulator, XRE family [Opitutaceae
          bacterium TAV2]
 gi|224800308|gb|EEG18707.1| putative transcriptional regulator, XRE family [Opitutaceae
          bacterium TAV2]
          Length = 79

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++  E+  R+G +Q  +S +E G     +D ++ +A  LD  L KLL+
Sbjct: 1  MSMGEVAWRSGLSQPMVSYVERGTRMPTLDTLLRMADALDLSLPKLLR 48


>gi|126347615|emb|CAJ89327.1| putative transcriptional regulatory protein [Streptomyces
          ambofaciens ATCC 23877]
          Length = 194

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N R  R  A L+  E+  R   ++  +  LE  +   N   ++ LA TL   +  L+
Sbjct: 11 LAHNVRAARTRAGLSLDELGRRAKVSKGALVALEKAQGNPNFATLVRLADTLGISVSSLM 70

Query: 82 K 82
          +
Sbjct: 71 E 71


>gi|91772690|ref|YP_565382.1| MerR family transcriptional regulator [Methanococcoides burtonii
          DSM 6242]
 gi|91711705|gb|ABE51632.1| HTH-type transcriptional regulator [Methanococcoides burtonii DSM
          6242]
          Length = 192

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E+     N R  R++  +T +E+ N +      I +LE G+   ++  ++ +A  L  
Sbjct: 1  MTEKNSVGENIRQFREDRSMTVEELANESQSNVELIEKLEKGELIPSLTPLLKIARALGV 60

Query: 76 PL 77
           L
Sbjct: 61 RL 62


>gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1
          str. 16M]
 gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330]
 gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840]
 gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457]
 gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str.
          Tulya]
 gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513]
 gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94]
 gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13]
 gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis
          M292/94/1]
 gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1
          str. Rev.1]
 gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33]
 gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1]
 gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94]
 gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99]
 gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99]
 gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13]
 gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2]
 gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1
          str. 16M]
 gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330]
 gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840]
 gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo]
 gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
 gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94]
 gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94]
 gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33]
 gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99]
 gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
 gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1]
 gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
 gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 2 str. 63/9]
 gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
 gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13]
 gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2]
 gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28]
 gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90]
          Length = 182

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|313888969|ref|ZP_07822628.1| replication initiation factor [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312844955|gb|EFR32357.1| replication initiation factor [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +  R    L+Q  +   TG  + ++S++ETGK   +          L   LW+ L+
Sbjct: 3  QHLKEKRLAYGLSQNRLAIATGITRQYLSDIETGKVKPS--------DELQQSLWETLE 53


>gi|312961427|ref|ZP_07775930.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
          WH6]
 gi|311284322|gb|EFQ62900.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens
          WH6]
          Length = 200

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+   +T  E+  R G ++  + E+E   +  +I  +  +A  L   +  ++
Sbjct: 22 VARTLKQARQAQSITLDELSRRAGVSKGMVVEIEKCTANPSIGILCKIAAALGLSVADIV 81


>gi|295106164|emb|CBL03707.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 98

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R     T KE+    G ++S++SE+E G        +   +  LD  L  L
Sbjct: 1  MIGETLKKLRGIYGYTAKELSELLGISRSYLSEIENGDKQPTYRLLEKYSDILDIKLSSL 60

Query: 81 L 81
          +
Sbjct: 61 M 61


>gi|269215841|ref|ZP_06159695.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
 gi|269130791|gb|EEZ61867.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia
          exigua ATCC 700122]
          Length = 72

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 20/57 (35%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    ++Q ++    G  +  I  +E G     ++  I +   L   L  L 
Sbjct: 8  RMKAARAARDMSQGDLAAAVGATRQTIGLIEAGGYNPTLNLCIAICRALGCTLNDLF 64


>gi|302873084|ref|YP_003841717.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307688759|ref|ZP_07631205.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302575941|gb|ADL49953.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 118

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKLL 81
            + +RKE  LTQ+E  ++   ++S+  ++E G+    N+  +  L+     P+   L
Sbjct: 5  KIKELRKEMGLTQEEFASKLEISRSYYCDIERGRLKGTNVKIISKLSDVTGKPMEYFL 62


>gi|241765791|ref|ZP_04763733.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241364329|gb|EER59474.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 87

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  RK   LTQ  + +R G +QS +S LE     ++++ ++     L   L
Sbjct: 14 LGTVLQAARKAQGLTQSALASRVGLSQSRVSHLELNAHELSVEQLLAWCAALGLEL 69


>gi|170702549|ref|ZP_02893425.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170132537|gb|EDT00989.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 304

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A+L  +++  R   +++ + +LE G+  + ID +  LA      L  L+
Sbjct: 22 GERLRAYRMAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLM 79


>gi|206971583|ref|ZP_03232533.1| transcriptional regulator, XRE family [Bacillus cereus AH1134]
 gi|206733568|gb|EDZ50740.1| transcriptional regulator, XRE family [Bacillus cereus AH1134]
          Length = 63

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +R E   T KE+    G  + +   +E GK     D ++ +A  L   L
Sbjct: 2  KTLKQLRVEQGYTCKEVAEAVGITEVYYWYIENGKRRPYYDLIVKIADFLKVKL 55


>gi|15609882|ref|NP_217261.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          H37Rv]
 gi|15842285|ref|NP_337322.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31793919|ref|NP_856412.1| transcriptional regulatory protein [Mycobacterium bovis
          AF2122/97]
 gi|121638623|ref|YP_978847.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148662587|ref|YP_001284110.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|148823933|ref|YP_001288687.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167966752|ref|ZP_02549029.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|215404713|ref|ZP_03416894.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215412559|ref|ZP_03421287.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215431685|ref|ZP_03429604.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|215446996|ref|ZP_03433748.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218754485|ref|ZP_03533281.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|219558754|ref|ZP_03537830.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224991115|ref|YP_002645804.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253798173|ref|YP_003031174.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254232844|ref|ZP_04926171.1| hypothetical protein TBCG_02682 [Mycobacterium tuberculosis C]
 gi|254551804|ref|ZP_05142251.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260187762|ref|ZP_05765236.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260201873|ref|ZP_05769364.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260206056|ref|ZP_05773547.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289444289|ref|ZP_06434033.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289448401|ref|ZP_06438145.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289570923|ref|ZP_06451150.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289575442|ref|ZP_06455669.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289746548|ref|ZP_06505926.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289754850|ref|ZP_06514228.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          EAS054]
 gi|289758872|ref|ZP_06518250.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|289762917|ref|ZP_06522295.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|294994163|ref|ZP_06799854.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297635354|ref|ZP_06953134.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297732351|ref|ZP_06961469.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298526212|ref|ZP_07013621.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis 94_M4241A]
 gi|306777026|ref|ZP_07415363.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306780929|ref|ZP_07419266.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306785555|ref|ZP_07423877.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|306790151|ref|ZP_07428473.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306794234|ref|ZP_07432536.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306798652|ref|ZP_07436954.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|306804508|ref|ZP_07441176.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|306807452|ref|ZP_07444120.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|306968808|ref|ZP_07481469.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|306973141|ref|ZP_07485802.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|307080850|ref|ZP_07490020.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|313659684|ref|ZP_07816564.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|2624267|emb|CAA15541.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|13882578|gb|AAK47136.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31619513|emb|CAD94951.1| POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121494271|emb|CAL72749.1| Possible transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|124601903|gb|EAY60913.1| hypothetical protein TBCG_02682 [Mycobacterium tuberculosis C]
 gi|148506739|gb|ABQ74548.1| putative transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|148722460|gb|ABR07085.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224774230|dbj|BAH27036.1| putative transcriptional regulatory protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253319676|gb|ACT24279.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289417208|gb|EFD14448.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289421359|gb|EFD18560.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289539873|gb|EFD44451.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289544677|gb|EFD48325.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289687076|gb|EFD54564.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          02_1987]
 gi|289695437|gb|EFD62866.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          EAS054]
 gi|289710423|gb|EFD74439.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|289714436|gb|EFD78448.1| transcriptional regulatory protein [Mycobacterium tuberculosis
          T85]
 gi|298496006|gb|EFI31300.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis 94_M4241A]
 gi|308214538|gb|EFO73937.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308326186|gb|EFP15037.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308329740|gb|EFP18591.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308333347|gb|EFP22198.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308337371|gb|EFP26222.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308341034|gb|EFP29885.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308346181|gb|EFP35032.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308348839|gb|EFP37690.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308353560|gb|EFP42411.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308357403|gb|EFP46254.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308361356|gb|EFP50207.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|326904360|gb|EGE51293.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328457946|gb|AEB03369.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R     T +E+ +    +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 6  REVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLPLS 65

Query: 79 KLL 81
           +L
Sbjct: 66 VVL 68


>gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC
          23330]
          Length = 206

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +N R E  L+Q  +    G  QS I ++E G    +   ++ LAH L T +  
Sbjct: 1  MSFNERVKNRRLELGLSQAALGKLAGVPQSTIGQIENG-RNKSSTKILELAHALQTTVEY 59

Query: 80 LL 81
          L+
Sbjct: 60 LV 61


>gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK355]
          Length = 168

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|328883993|emb|CCA57232.1| Transcriptional regulator, XRE family [Streptomyces venezuelae
          ATCC 10712]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R+ A+L+ +++ +  G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGDYLREQRRTAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEVLQQVAKALRISAETL 67


>gi|313499638|gb|ADR61004.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 185

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +RK  ++T K++   +G   S +S++E  + +++ + +   A  L+  + +L +
Sbjct: 2  GQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLFR 61


>gi|312621117|ref|YP_003993845.1| hypothetical protein pPHDD1_p163 [Photobacterium damselae subsp.
          damselae]
 gi|311872838|emb|CBX86929.1| hypothetical protein [Photobacterium damselae subsp. damselae]
          Length = 91

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N+  ++R+++ LTQ E+  + G     IS LE+G+S  ++  ++  A      L
Sbjct: 31 NSLISMREKSGLTQDEVAEKMGTKAPNISRLESGRSNPSLKTLVSYAQACGFKL 84


>gi|302672228|ref|YP_003832188.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302396701|gb|ADL35606.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 277

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +RKE  LTQ +I          IS+ ETGK+  +   M+ L   L   + +LL
Sbjct: 7  GKFIAGLRKEKGLTQAQIAEMLNITDRAISKWETGKNMPDSSIMLELCGILGITVNELL 65


>gi|257053231|ref|YP_003131064.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
          12940]
 gi|256691994|gb|ACV12331.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM
          12940]
          Length = 75

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 27/60 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+    R+ + L+Q+ +       +  I+ +E  +   +++ +  LA   + P+  L  P
Sbjct: 3  NSLTEYREASGLSQRALAEHVAVTRQTINAVEGNRYDPSVELVFKLAAFFEVPVEDLFHP 62


>gi|238921821|ref|YP_002935335.1| hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC
          27750]
 gi|238873493|gb|ACR73201.1| Hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC
          27750]
          Length = 154

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+  K+T K++  ++G   S I + ET      ++ +  +A  LD  +++ L
Sbjct: 14 LARTIRKYREARKMTMKQLSIKSGIKLSTIKKYETDNRNPKLEQLEKIAAALDVSVFEFL 73


>gi|238019742|ref|ZP_04600168.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC
          17748]
 gi|237863266|gb|EEP64556.1| hypothetical protein VEIDISOL_01617 [Veillonella dispar ATCC
          17748]
          Length = 91

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFR--NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          + R+ P L+++ L E+    N       R+ A LTQ+++  ++G  QS I+ +E G +  
Sbjct: 12 KDRNNPTLTESYLEEKAKLENALAVLKAREAAGLTQRDLAKKSGVPQSTIARIEKG-ANT 70

Query: 62 NIDNMIILAHTLDTP 76
          ++  M  +A  LD  
Sbjct: 71 SLSTMCKIAFALDKQ 85


>gi|237794998|ref|YP_002862550.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657]
 gi|229264088|gb|ACQ55121.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657]
          Length = 141

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +R+  KLTQ E+ N+   AQS I  +E  K       +I LA      +  L
Sbjct: 1  MLGDKIKQLRENKKLTQHELANKLNIAQSTIGMIEGNKRPAGRKTLIKLADFFGVSVDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|257792707|ref|YP_003183313.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476604|gb|ACV56924.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 312

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +N +++R    +TQ E+    G ++  +++ E  KS   +D ++ L    +  L  
Sbjct: 1  MSFRDNLQHLRDTRNMTQSELAMLVGVSRQSVAKWEAEKSYPEMDKLLKLCDLFECTLDD 60

Query: 80 LLK 82
          L++
Sbjct: 61 LVR 63


>gi|227542316|ref|ZP_03972365.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181916|gb|EEI62888.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 123

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       R  R +  LT +++ +    +  ++SELE G+  ++ + +  +   L   + 
Sbjct: 42  REALGTALRTFRADNHLTLRQLADLARVSPGYLSELERGRKEVSSELLASVCRALGVSVA 101

Query: 79  KLL 81
            +L
Sbjct: 102 DVL 104


>gi|227512467|ref|ZP_03942516.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC
          11577]
 gi|227522692|ref|ZP_03952741.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii
          ATCC 8290]
 gi|227084292|gb|EEI19604.1| hypothetical protein HMPREF0497_1589 [Lactobacillus buchneri ATCC
          11577]
 gi|227090140|gb|EEI25452.1| hypothetical protein HMPREF0519_0401 [Lactobacillus hilgardii
          ATCC 8290]
          Length = 67

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R + KL+Q ++  ++G  QS IS +E G        +  LA  L+    +LL
Sbjct: 4  NQLRFFRDKQKLSQTDLAVKSGVKQSTISSIERG-VDPTGRTLRKLAQALNVTTDELL 60


>gi|117621486|ref|YP_857504.1| DNA-binding transcriptional repressor PuuR [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
 gi|117562893|gb|ABK39841.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila
          subsp. hydrophila ATCC 7966]
          Length = 203

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D P     +              R+   L+Q+ +   +G     I  +E  K + ++ ++
Sbjct: 15 DNPMTDKGVA---QSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASL 71

Query: 67 IILAHTLDTPLWKLL 81
            L    + PL +  
Sbjct: 72 QKLLSVYELPLSRFF 86


>gi|37783322|gb|AAP44573.1| unknown protein [Lactobacillus sakei]
          Length = 165

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ KE  L+Q E+  + G  +  IS +E G      +++   A        +L 
Sbjct: 1  MSHVTKEMGLSQTELAEKIGVQKQTISNIERGIRYPTFESLEKFATVFHATPIQLF 56


>gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316]
 gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R EA LTQKE+      +Q  I+  E G       ++  LA+  +     L
Sbjct: 1  MLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|238794383|ref|ZP_04637994.1| DNA-binding phage-related protein [Yersinia intermedia ATCC
          29909]
 gi|238726284|gb|EEQ17827.1| DNA-binding phage-related protein [Yersinia intermedia ATCC
          29909]
          Length = 99

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   ++ RK   LTQ+++  + G  +  IS +E GKS  N+  +   A  L 
Sbjct: 34 RKALMTQLKDARKALHLTQQDVAQKIGTQKQNISRMENGKSVPNLATLSRYAAALG 89


>gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 168

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|317481430|ref|ZP_07940497.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
 gi|316902415|gb|EFV24302.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
          Length = 92

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          E  LTQ+ +  +    Q +IS++  GK  ++++ +  + + L   + + L
Sbjct: 39 ELGLTQQMLAEKMNCTQQYISKVLKGKKNMSLETICKIENALGIEIIRSL 88


>gi|313107823|ref|ZP_07793997.1| hypothetical protein PA39016_001140025 [Pseudomonas aeruginosa
          39016]
 gi|310880499|gb|EFQ39093.1| hypothetical protein PA39016_001140025 [Pseudomonas aeruginosa
          39016]
          Length = 62

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          RK  +++Q  +       +S++  +E G+  I ++ +  +A  L      LL P
Sbjct: 3  RKVCRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELACDPSSLLPP 56


>gi|309378536|emb|CBX22808.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 126

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +NI  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNIPRLEQLAQIFKIDMWDLLK 63


>gi|291525582|emb|CBK91169.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291528252|emb|CBK93838.1| Predicted transcriptional regulators [Eubacterium rectale M104/1]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   + 
Sbjct: 1  MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGNSTPSAEFMLRISKYFNM 56


>gi|240851130|ref|YP_002972532.1| transcriptional regulator [Bartonella grahamii as4aup]
 gi|240268253|gb|ACS51841.1| transcriptional regulator [Bartonella grahamii as4aup]
          Length = 117

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     R+ R    L+QK + +  G +   I + E G + ++   ++ +A  LD P+
Sbjct: 12 LIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSAGCLLEIAQKLDVPI 68


>gi|229015775|ref|ZP_04172754.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273]
 gi|228745532|gb|EEL95555.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273]
          Length = 83

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T 
Sbjct: 15 VRRKDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTT 74

Query: 77 LWKLL 81
          + KL 
Sbjct: 75 VDKLF 79


>gi|237731603|ref|ZP_04562084.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907142|gb|EEH93060.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 178

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R + + +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    +
Sbjct: 8  LATTLKTLRHQREWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFI 67

Query: 82 KP 83
           P
Sbjct: 68 SP 69


>gi|261400526|ref|ZP_05986651.1| DNA-binding protein [Neisseria lactamica ATCC 23970]
 gi|313669239|ref|YP_004049523.1| hypothetical protein NLA_19700 [Neisseria lactamica ST-640]
 gi|269209789|gb|EEZ76244.1| DNA-binding protein [Neisseria lactamica ATCC 23970]
 gi|313006701|emb|CBN88169.1| hypothetical protein NLA_19700 [Neisseria lactamica 020-06]
          Length = 134

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R IR+    +Q+ +  +   + +  +++E G+  + +D +  +A  L   +  LL 
Sbjct: 5  EKIRKIRELKNFSQENMAEQLQMSVNGYAKIERGEVGLQMDKLEKIADVLGMDVVDLLT 63


>gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445]
 gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 182

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E+  R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|160915054|ref|ZP_02077267.1| hypothetical protein EUBDOL_01062 [Eubacterium dolichum DSM 3991]
 gi|158432853|gb|EDP11142.1| hypothetical protein EUBDOL_01062 [Eubacterium dolichum DSM 3991]
          Length = 424

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +R +     R  R++  +T   +    G  + ++SE+E G+   +   +  L + +D
Sbjct: 11 SELKRKLTGALLRYYREDENMTINFVAESLGINKGYLSEIERGRKEPSSQMLEKLTNFMD 70

Query: 75 T 75
           
Sbjct: 71 I 71


>gi|121633999|ref|YP_974244.1| hypothetical protein NMC0113 [Neisseria meningitidis FAM18]
 gi|120865705|emb|CAM09432.1| hypothetical protein NMC0113 [Neisseria meningitidis FAM18]
          Length = 125

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R+  K +Q+++  +   +    +++E G++ +N+  +  LA      +W LLK
Sbjct: 5  EKIRLMRELNKWSQEDMAEKLAMSAGGYAKIERGETQLNVPRLEQLAQIFKIDMWDLLK 63


>gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 277

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N    RKE   TQ+E+  + G     +S+ ET ++  +I  +  L+  LD  + KLL
Sbjct: 5  LAKNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKLL 64


>gi|15596103|ref|NP_249597.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|107100364|ref|ZP_01364282.1| hypothetical protein PaerPA_01001389 [Pseudomonas aeruginosa
          PACS2]
 gi|116048830|ref|YP_792370.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893125|ref|YP_002441994.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254239258|ref|ZP_04932581.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719]
 gi|296390740|ref|ZP_06880215.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313105790|ref|ZP_07792053.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
 gi|9946808|gb|AAG04295.1|AE004525_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115584051|gb|ABJ10066.1| probable transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|126171189|gb|EAZ56700.1| hypothetical protein PACG_05450 [Pseudomonas aeruginosa C3719]
 gi|218773353|emb|CAW29165.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|310878555|gb|EFQ37149.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
          Length = 237

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
            +  RK A L+Q ++    G  Q+ IS+LE GKS      +  +A      PLW
Sbjct: 6  RIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRAT-SFVAQIAGACGVNPLW 59


>gi|332310433|gb|EGJ23528.1| Putative repressor protein [Listeria monocytogenes str. Scott A]
          Length = 84

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + IR    +TQ E     G + S +S++E G    +    I +A+     + ++ 
Sbjct: 9  NNLKKIRIAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYGKSVGEIF 66


>gi|304439396|ref|ZP_07399308.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372178|gb|EFM25772.1| transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 71

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++   N  + IR E KLTQK + +  G +++ IS +ETG+        +IL   LD   
Sbjct: 3  DKLELKNRLKEIRSEKKLTQKNLADMVGVSRNTISSIETGEFCPTSRLALILCIALDKKF 62

Query: 78 WKLL 81
            + 
Sbjct: 63 EDIF 66


>gi|293597074|ref|ZP_05267060.2| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293585265|gb|EFF97297.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
          Length = 75

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + IR    +TQ E     G + S +S++E G    +    I +A+     + ++ 
Sbjct: 17 NNLKKIRIAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYGKSVGEIF 74


>gi|293382140|ref|ZP_06628083.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|293388549|ref|ZP_06633052.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|304440304|ref|ZP_07400193.1| cro/CI family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|312905764|ref|ZP_07764786.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312909040|ref|ZP_07767900.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|291080423|gb|EFE17787.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|291082071|gb|EFE19034.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|291166678|gb|EFE28724.1| transcriptional regulator [Filifactor alocis ATCC 35896]
 gi|304371056|gb|EFM24673.1| cro/CI family transcriptional regulator [Peptoniphilus duerdenii
          ATCC BAA-1640]
 gi|310628243|gb|EFQ11526.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|311290602|gb|EFQ69158.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +  R    L+Q  +   TG  + ++S++ETGK   +          L   LW+ L+
Sbjct: 3  QHLKEKRLAYGLSQNRLAIATGITRQYLSDIETGKVKPS--------DELQQSLWETLE 53


>gi|290957415|ref|YP_003488597.1| regulatory protein [Streptomyces scabiei 87.22]
 gi|260646941|emb|CBG70040.1| putative regulatory protein [Streptomyces scabiei 87.22]
          Length = 276

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               R +R EA LT   +  R G  Q  +S++ETG+   + D +  L   LD
Sbjct: 4  LGARLRVLRAEAGLTGAVLAQRAGVGQPTVSKVETGRMVPSADVLDRLTRALD 56


>gi|257898371|ref|ZP_05678024.1| predicted protein [Enterococcus faecium Com15]
 gi|257836283|gb|EEV61357.1| predicted protein [Enterococcus faecium Com15]
          Length = 130

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77
          F    + +R    L   ++  ++G + S IS  E G+     ++ +  L+  L   +
Sbjct: 3  FGEKLKKLRTSRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSI 59


>gi|224823540|ref|ZP_03696649.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224603995|gb|EEG10169.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RK+ KL+  E+  R G ++  + E+E   +  +I  +  +A  L   +  ++
Sbjct: 22 VAAKLKQHRKKQKLSLDELSRRAGVSKGMLVEIEKCIANPSIAILCKIAAALGVSVADIV 81


>gi|197302037|ref|ZP_03167098.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC
          29176]
 gi|197298846|gb|EDY33385.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC
          29176]
          Length = 336

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI        RK+   +Q+E+  +   ++  +S+ E+  S  ++  ++ +A   +     
Sbjct: 3  MILSEKIAEERKKNGWSQEELAEKLSVSRQAVSKWESASSVPDLQKLLRMAKIFEVSTDY 62

Query: 80 LLK 82
          LLK
Sbjct: 63 LLK 65


>gi|197284430|ref|YP_002150302.1| fimbrial operon regulator [Proteus mirabilis HI4320]
 gi|194681917|emb|CAR41287.1| fimbrial operon regulator [Proteus mirabilis HI4320]
          Length = 101

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I        RKE  +T +EI +    +Q   S +E G + I ++++  +A  L     +L
Sbjct: 7  IIAYRIMQKRKELGMTGREIAHSLEISQQHYSRIENGHTKITVEHLFSIAFILGVKPKEL 66

Query: 81 L 81
          L
Sbjct: 67 L 67


>gi|153931878|ref|YP_001384723.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935604|ref|YP_001388244.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|170757150|ref|YP_001782087.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|152927922|gb|ABS33422.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931518|gb|ABS37017.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|169122362|gb|ACA46198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 82

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F +  + +R++  LTQ +I +     +S ++  E G    +I  ++ +A   +  L  
Sbjct: 1  MVFKDRLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|187925298|ref|YP_001896940.1| XRE family transcriptional regulator [Burkholderia phytofirmans
          PsJN]
 gi|187716492|gb|ACD17716.1| transcriptional regulator, XRE family [Burkholderia phytofirmans
          PsJN]
          Length = 229

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 34/75 (45%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P  ++       +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  + 
Sbjct: 18 SPRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLC 77

Query: 68 ILAHTLDTPLWKLLK 82
           +A  L   +   L+
Sbjct: 78 KVAAALKVSVAAFLR 92


>gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC
          12472]
 gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
          12472]
          Length = 115

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK   + Q+++  + G     IS LE G+    +  ++ LA  L   +  LL
Sbjct: 14 GQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVLGCSVNDLL 72


>gi|83592461|ref|YP_426213.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
          11170]
 gi|83575375|gb|ABC21926.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
          11170]
          Length = 104

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
              +  R+   ++Q+E+   TG  QS IS++E     + + ++I LAH +   L 
Sbjct: 9  AKALKEAREAKAMSQRELSANTGVPQSHISKIERNGVDLRLSSLIALAHGVGLDLV 64


>gi|16798820|ref|NP_463498.1| putative repressor protein [Listeria phage A118]
 gi|254825099|ref|ZP_05230100.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J1-194]
 gi|254901047|ref|ZP_05260971.1| XRE family transcriptional regulator [Listeria monocytogenes
          J0161]
 gi|254914003|ref|ZP_05264015.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|5823635|emb|CAB53823.1| putative repressor protein [Listeria phage A118]
 gi|293592020|gb|EFG00355.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|293594342|gb|EFG02103.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J1-194]
          Length = 80

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + IR    +TQ E     G + S +S++E G    +    I +A+     + ++ 
Sbjct: 5  NNLKKIRIAKGITQLEAAEAIGISYSLLSKMEAGYRGSSDKTKIKVANFYGKSVGEIF 62


>gi|83858372|ref|ZP_00951894.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633]
 gi|83853195|gb|EAP91047.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633]
          Length = 76

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F N  +  R +  L+++E+  R       I  +E G+    I+  + L+ TL   L  L 
Sbjct: 7  FQNRVKTYRVDCGLSRQELATRVQVHPQTIGAIERGQFNPTIEVALRLSETLGVGLDALF 66


>gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 101

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +R+E   +Q ++  +    Q  IS  E+G    +I  +  LA   +  +  LL+
Sbjct: 3  RIKELRQEKDFSQIQLAKQFDITQQTISNYESGVREPSITTLKNLADFFNVSIDYLLE 60


>gi|332981127|ref|YP_004462568.1| helix-turn-helix domain-containing protein [Mahella australiensis
          50-1 BON]
 gi|332698805|gb|AEE95746.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON]
          Length = 74

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     ++IR +   T +++   +G +  ++ ++E  +S  +++ +  +A+ L+      
Sbjct: 1  MIGKKLKSIRNKRGYTLRQLEKLSGVSHGFLCDIEHDRSDPSLETLHKIANALEIEPAYF 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
 gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
          Length = 109

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     + +R    LTQKE+  ++G   + I   E G  + + + +  ++ T D  +  
Sbjct: 1  MISGKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISA 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|320094251|ref|ZP_08026052.1| cro/CI family transcriptional regulator [Actinomyces sp. oral
          taxon 178 str. F0338]
 gi|319978817|gb|EFW10359.1| cro/CI family transcriptional regulator [Actinomyces sp. oral
          taxon 178 str. F0338]
          Length = 71

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          NN + +R E + TQ E     G ++  +  +E GK   ++     +A      +  +  P
Sbjct: 3  NNVKELRSEQRWTQAEFGASLGVSRQTVIAIENGKYDPSLGLAFKIASVFGKCIEDIFYP 62


>gi|312901705|ref|ZP_07760974.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|311291174|gb|EFQ69730.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|315148196|gb|EFT92212.1| helix-turn-helix protein [Enterococcus faecalis TX4244]
          Length = 427

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 3  GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54


>gi|301310342|ref|ZP_07216281.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 20_3]
 gi|300831916|gb|EFK62547.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bacteroides sp. 20_3]
          Length = 83

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    E  +T   +  + G ++  +S + TGKS+ ++DN+I +A  L+  + +L+
Sbjct: 4  RIKEFMNERNITSAWLAKQVGISKVAVSNIVTGKSSPSLDNIIKIASVLNVSITELI 60


>gi|296533827|ref|ZP_06896363.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
 gi|296265845|gb|EFH11934.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC
          49957]
          Length = 192

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +R E  L+ +E+  RTG +++ +S LE  +++     +  L       L  ++
Sbjct: 18 LARLRAEQGLSLEELAGRTGISRATLSRLERAEASPTAAMLGRLCTAYGRTLSWMM 73


>gi|293380466|ref|ZP_06626533.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus crispatus 214-1]
 gi|290922973|gb|EFD99908.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus crispatus 214-1]
          Length = 120

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ +      +IR    ++Q E+  +    ++ ++++E G   I+ D +  +A  L    
Sbjct: 3  DQELLARKIVSIRNSQDMSQLELAQKANIERTALNKIEKGTRKISSDELKRIALALHQSS 62

Query: 78 WKLL 81
            LL
Sbjct: 63 DDLL 66


>gi|255692636|ref|ZP_05416311.1| DNA-binding protein [Bacteroides finegoldii DSM 17565]
 gi|260621612|gb|EEX44483.1| DNA-binding protein [Bacteroides finegoldii DSM 17565]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  +T +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKALREDKTITIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|145636517|ref|ZP_01792185.1| hypothetical protein CGSHiHH_08567 [Haemophilus influenzae
          PittHH]
 gi|145270342|gb|EDK10277.1| hypothetical protein CGSHiHH_08567 [Haemophilus influenzae
          PittHH]
          Length = 95

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R +  +T+ ++ N    + S+++ LE GK   N+  +  +   L  P   L+
Sbjct: 11 RTQKGITKTQLANDANISISYLTLLEQGKREPNLTTINSICKALQIPPSILI 62


>gi|110800265|ref|YP_696047.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110674912|gb|ABG83899.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 114

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  + +RKE  LTQ ++ N    + S I   E  + T + + +  L++  +  +  L
Sbjct: 1  MFGNRLKTLRKEKDLTQAQLANILKTSASAIGMYEQNRRTPDTETLQTLSNYFNVSVDYL 60

Query: 81 L 81
          +
Sbjct: 61 I 61


>gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium]
          Length = 63

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + IRK+  +TQ+++    G  +  I+ +E  K    ++    L+  L   + +L 
Sbjct: 3  NKIKAIRKKLGITQEQLAKECGVVRQTINCIENDKYDPTLELAFKLSKMLKVKVDELF 60


>gi|323492256|ref|ZP_08097414.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis
          LMG 20546]
 gi|323313569|gb|EGA66675.1| putative helix-turn-helix regulatory protein [Vibrio brasiliensis
          LMG 20546]
          Length = 185

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 R+ + L+  E+  R   A+S +S+LE G    +I+ +  +   LD P  +L++
Sbjct: 12 AATLSRERQRSGLSLSEVAKRAQIAKSTLSQLENGAGNPSIETLWSICVVLDIPFSRLIE 71


>gi|293605930|ref|ZP_06688300.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
 gi|292815717|gb|EFF74828.1| XRE family transcriptional regulator [Achromobacter piechaudii
          ATCC 43553]
          Length = 106

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
            +  +  RK   LTQ  +  R G +QS +S LE     ++++ +I     L   L 
Sbjct: 33 LGSVLQAARKAQGLTQSALAIRIGLSQSRVSHLELHPHELSVEQLITWCSALGLELV 89


>gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 167

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|260430989|ref|ZP_05784960.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
 gi|260414817|gb|EEX08076.1| transcriptional regulator, XRE family [Silicibacter
          lacuscaerulensis ITI-1157]
          Length = 466

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R    LTQKE   + G +  +++++E     I+   ++ LA      
Sbjct: 3  TQKLYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPISTTVVLALAQEFGMD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|227484822|ref|ZP_03915138.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227237182|gb|EEI87197.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 70

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK   +TQ+E+      ++  +  LE G+   +I     +A   +  +  + 
Sbjct: 3  NRLEEIRKHKGITQEELAKILEVSRQTVGSLENGRYNPSIILAFKIARYFEMAIEDIF 60


>gi|189349776|ref|YP_001945404.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189333798|dbj|BAG42868.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 97

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  +       R +RK   L+Q+   + +  +++++S LE    +  +  +  L   +D 
Sbjct: 1  MTAKHSLATAIRTVRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTMHKLTELCEVMDV 58

Query: 76 PLWKLLK 82
              LL 
Sbjct: 59 HPLTLLT 65


>gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662]
 gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp.
          3_2_56FAA]
 gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662]
 gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp.
          3_2_56FAA]
          Length = 194

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE +LTQ ++      +   IS+ E G    +I     L+   D  L KLL
Sbjct: 7  GKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDLEKLL 65


>gi|104781495|ref|YP_607993.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila
          L48]
 gi|95110482|emb|CAK15190.1| putative transcriptional regulator, Cro/CI family [Pseudomonas
          entomophila L48]
          Length = 180

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 33/57 (57%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK+  +T + +  ++G  +S++S++E G +T +I   + LA  L+  + +L 
Sbjct: 4  RLKLLRKKLGITLEVLAEKSGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELF 60


>gi|84498439|ref|ZP_00997209.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
 gi|84381182|gb|EAP97066.1| putative DNA-binding protein [Janibacter sp. HTCC2649]
          Length = 122

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R   +L+ +++ +  G +  ++S+LE G    + + +  LA  L+     L
Sbjct: 12 LGDYLREQRLSHRLSLRQLSDLAGISNPYLSQLERGLKRPSAEILQQLAKGLEVSAETL 70


>gi|83952965|ref|ZP_00961693.1| hypothetical protein ISM_17405 [Roseovarius nubinhibens ISM]
 gi|83835656|gb|EAP74957.1| hypothetical protein ISM_17405 [Roseovarius nubinhibens ISM]
          Length = 85

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + R +A L Q E+  +    QS I+ LE+G+  +++  +++LA  +    +++L
Sbjct: 15 QALVDARIKAGLGQAELATKLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPYEVL 72


>gi|256960273|ref|ZP_05564444.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256950769|gb|EEU67401.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +  R    L+Q  +   TG  + ++S++ETGK   +          L   LW+ L+
Sbjct: 8  QHLKEKRLAYGLSQNRLAIATGITRQYLSDIETGKVKPS--------DELQQSLWETLE 58


>gi|302557278|ref|ZP_07309620.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
 gi|302474896|gb|EFL37989.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces griseoflavus Tu4000]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R++ +++Q E+  R G +   IS +ETG+S  + + ++ LA  LD P+ +
Sbjct: 20 LRAWREQRRVSQLELALRAGSSARHISFVETGRSRPSEEMVLRLAEHLDVPVRE 73


>gi|261402920|ref|YP_003247144.1| transcriptional regulator, XRE family [Methanocaldococcus vulcanius
           M7]
 gi|261369913|gb|ACX72662.1| transcriptional regulator, XRE family [Methanocaldococcus vulcanius
           M7]
          Length = 314

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW- 78
            I  N  + +R+   ++  ++    G ++  I + ET  +  ++D  I +   LD PL  
Sbjct: 122 KIDGNVLKEVRESMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVAIKIEEFLDVPLVR 181

Query: 79  --KLLKP 83
              L +P
Sbjct: 182 GIDLFEP 188


>gi|296129386|ref|YP_003636636.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
 gi|296021201|gb|ADG74437.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM
          20109]
          Length = 120

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R+    T +E+ +    +  ++SE+E G+   + + +  +   LD P+ 
Sbjct: 5  RREIGDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLSSICDALDVPMS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 LVLR 68


>gi|225019710|ref|ZP_03708902.1| hypothetical protein CLOSTMETH_03663 [Clostridium methylpentosum
          DSM 5476]
 gi|224947555|gb|EEG28764.1| hypothetical protein CLOSTMETH_03663 [Clostridium methylpentosum
          DSM 5476]
          Length = 77

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 18 ERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE--TGKSTINIDNMIILAHTLD 74
          ER I      +  RK    TQ+        + S+IS++E  T    ++++ +  +A  L+
Sbjct: 7  ERYIKLGLKIQYYRKLRGFTQETFAEAIDKSWSFISKIESPTTIRGVSLETLFKMADVLE 66

Query: 75 TPLWKLLK 82
             +KL+K
Sbjct: 67 IEPYKLIK 74


>gi|154484851|ref|ZP_02027299.1| hypothetical protein EUBVEN_02569 [Eubacterium ventriosum ATCC
          27560]
 gi|210610460|ref|ZP_03288417.1| hypothetical protein CLONEX_00607 [Clostridium nexile DSM 1787]
 gi|149733804|gb|EDM49923.1| hypothetical protein EUBVEN_02569 [Eubacterium ventriosum ATCC
          27560]
 gi|210152453|gb|EEA83459.1| hypothetical protein CLONEX_00607 [Clostridium nexile DSM 1787]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   + 
Sbjct: 1  MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNM 56


>gi|116873523|ref|YP_850304.1| DNA-binding protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116742401|emb|CAK21525.1| DNA-binding protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 426

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     RN+RK+  +T K++ +    +  +++ +E G  T +I+ ++ LA  L+ P   L
Sbjct: 3  LIGLRIRNLRKQKGMTLKDVSHGI-VSIPYLANIENGVKTASIETLMHLARRLEVPEETL 61

Query: 81 L 81
          L
Sbjct: 62 L 62


>gi|50121363|ref|YP_050530.1| regulator of pectin lyase production [Pectobacterium atrosepticum
          SCRI1043]
 gi|49611889|emb|CAG75338.1| regulator of pectin lyase production [Pectobacterium atrosepticum
          SCRI1043]
          Length = 244

 Score = 46.1 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          +       +  R    L+QK + +  G +Q+ I ++E GK++     ++ L++ L   P 
Sbjct: 2  KTTLAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKASQTT-KIVELSNALHIRPE 60

Query: 78 W 78
          W
Sbjct: 61 W 61


>gi|319744195|gb|EFV96562.1| XRE family transcriptional regulator [Streptococcus agalactiae
          ATCC 13813]
          Length = 129

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK+A LTQKEI  + G +Q    + E G      +N   LA   +  L  L+
Sbjct: 15 FSERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGVKMPTHENSKKLARLFNITLDTLM 74


>gi|315036199|gb|EFT48131.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
          Length = 438

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 14 GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 65


>gi|313829196|gb|EFS66910.1| cupin domain protein [Propionibacterium acnes HL063PA2]
          Length = 194

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R   + T  ++ +  G ++  +  +E G     +  ++ L+  L   L  L++
Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72

Query: 83 P 83
          P
Sbjct: 73 P 73


>gi|289191957|ref|YP_003457898.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
          FS406-22]
 gi|288938407|gb|ADC69162.1| transcriptional regulator, XRE family [Methanocaldococcus sp.
          FS406-22]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+++  + G ++  I  +E GK   ++     +A      +  + 
Sbjct: 3  NKLKIYRAMYNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60


>gi|229100015|ref|ZP_04230935.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29]
 gi|228683443|gb|EEL37401.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N     R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  + P+  +
Sbjct: 1  MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANEFEKPITDV 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|256376030|ref|YP_003099690.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255920333|gb|ACU35844.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 512

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 30/58 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R++   +Q ++      +QS I+ +E G   ++++ +  ++  LD+ +  + +P
Sbjct: 17 IRASRRQRGWSQAQLATAVSTSQSAINRIEQGGQNLSLEMLSRISEALDSGIVSIGQP 74


>gi|254388231|ref|ZP_05003467.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294817295|ref|ZP_06775937.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197701954|gb|EDY47766.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
          27064]
 gi|294322110|gb|EFG04245.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 389

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
              + +RK   L+Q+++   +G + S I +LE G   T  ++ +  LA  LD P   L+
Sbjct: 6  GRKLKEVRKRRGLSQRDLAKASGVSLSLIRKLEQGDYGTPMLETLRKLASVLDIPTMCLV 65


>gi|167589784|ref|ZP_02382172.1| helix-turn-helix domain protein [Burkholderia ubonensis Bu]
          Length = 304

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A+L  +++  R   +++ + +LE G+  + ID +  LA      L  L+
Sbjct: 22 GERLRAYRMAAELRSEDVAERLNISRAAVYKLERGEI-VKIDTLERLAALFGVSLANLM 79


>gi|154498771|ref|ZP_02037149.1| hypothetical protein BACCAP_02762 [Bacteroides capillosus ATCC
          29799]
 gi|150272161|gb|EDM99365.1| hypothetical protein BACCAP_02762 [Bacteroides capillosus ATCC
          29799]
          Length = 80

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK--STINIDNMIILAHTLDTPLWKLL 81
           N +  RKE  +T  ++      +  ++ ++E+ +     +++    ++  L   + KL 
Sbjct: 19 RNIKKYRKEKGMTSAQLAELVDLSHDFVRQIESERVGHNFSVETFYKISVALGVSMDKLA 78

Query: 82 K 82
          +
Sbjct: 79 R 79


>gi|154500969|ref|ZP_02039007.1| hypothetical protein BACCAP_04655 [Bacteroides capillosus ATCC
          29799]
 gi|150269993|gb|EDM97512.1| hypothetical protein BACCAP_04655 [Bacteroides capillosus ATCC
          29799]
          Length = 79

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  + IF    R +RK+    QK +      + + ISE+E G     ++ + ++    + 
Sbjct: 1  MTTKEIFSQRMRELRKQTGQPQKVLAELLDVSVNQISEMEKGTRMTTLEKLAVICQHYNV 60

Query: 76 PLWKLL 81
              LL
Sbjct: 61 SADYLL 66


>gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39]
 gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39]
          Length = 108

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N R +R++   +Q E+  R   +    S++ETG + INI  +  +AH        +
Sbjct: 3  VIGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLEQIAHLFQVSTMDI 62

Query: 81 L 81
          +
Sbjct: 63 I 63


>gi|157370471|ref|YP_001478460.1| XRE family transcriptional regulator [Serratia proteamaculans
          568]
 gi|157322235|gb|ABV41332.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 187

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R +   +  +    TG +++ + ++E G+S+  +  +  +A   +      L
Sbjct: 8  LAQTLRSLRSQRGWSLAQAAENTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSAFL 67

Query: 82 K 82
          +
Sbjct: 68 E 68


>gi|86355802|ref|YP_467694.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42]
 gi|86279904|gb|ABC88967.1| putative transcriptional regulator protein, Cro/CI family
          [Rhizobium etli CFN 42]
          Length = 121

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R +R   +++Q ++    G     I + E G + ++   +  +A  L   +  L
Sbjct: 8  IVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLGVEISAL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 126

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +  + +R +  + Q E+       QS IS+ E  +ST N + +  +A   +     
Sbjct: 1  MAFSDKLKQLRTKKGIKQSELAEILHLRQSSISDYENNRSTPNPETIKKIAEYFNVSANY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|332800290|ref|YP_004461789.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp.
          Re1]
 gi|332698025|gb|AEE92482.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F    + +RK+  L+Q E+  RT  F QS IS++E     +  + + I+A  L   + +
Sbjct: 1  MFGQKIKQLRKQNNLSQSELARRTRIFNQSQISKIENNTRFLKANELKIIADALGVKVEE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
 gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola
          ACS-139-V-Col8]
          Length = 327

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+   +Q+E     G ++  +S+ E  +ST  ++ +I ++         
Sbjct: 1  MILADKIIELRKKNGWSQEEFAEMLGVSRQSVSKWEGAQSTPELNRLIQMSKIFSVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|300856321|ref|YP_003781305.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300436436|gb|ADK16203.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 71

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++    N  +  R E  ++Q+++    G ++  IS +ETG+        +ILA  L    
Sbjct: 3  DKTNLNNRLKVARAELNISQQQLATMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKF 62

Query: 78 WKLL 81
            L 
Sbjct: 63 EDLF 66


>gi|294630753|ref|ZP_06709313.1| transcriptional regulator [Streptomyces sp. e14]
 gi|292834086|gb|EFF92435.1| transcriptional regulator [Streptomyces sp. e14]
          Length = 442

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          RR+R    +++A    R I     R  R   + +QK++    G+ QS +S LE G+ T +
Sbjct: 12 RRRRGPWQMAEAHSEARRI-GEVIRQARVLQRRSQKDVAAALGYHQSKVSRLEGGQGTED 70

Query: 63 IDNMIILAHTLDTPLWKL 80
          I  +  +A  L  P  +L
Sbjct: 71 IRVLRAVAQELKIPPQQL 88


>gi|291541574|emb|CBL14684.1| Helix-turn-helix [Ruminococcus bromii L2-63]
          Length = 69

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F       RK+  L+Q E+  ++GF +  I   E GK +I+++N   L   L   +
Sbjct: 6  FAEILLKSRKQKSLSQSELAKKSGFTKRAIQYWEKGKKSISLENADRLLTALGVEI 61


>gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103]
 gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103]
          Length = 181

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  + +R+    +      +TG +++ + ++E G+S+  +  +  +A   + P
Sbjct: 8  LGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62


>gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 374

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65


>gi|227513203|ref|ZP_03943252.1| repressor protein [Lactobacillus buchneri ATCC 11577]
 gi|227083584|gb|EEI18896.1| repressor protein [Lactobacillus buchneri ATCC 11577]
          Length = 80

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R  R +  LT ++I ++ G ++S+ S +E G+   + +    +A  L T  
Sbjct: 5  LRETRLKKGLTMQQIADKVGISKSYYSLIERGERRASYELTFKIAKILKTKP 56


>gi|256375244|ref|YP_003098904.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255919547|gb|ACU35058.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 403

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI-DNMIILAHTLDTPLWKLL 81
           N    RK   L+Q+E+          +  +E G+ +      ++ LA  L      LL
Sbjct: 7  ENLARFRKARNLSQEELAVAASVGVDTVGRIERGERSTTRPSTIVKLARALGVSADSLL 65


>gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4]
 gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4]
          Length = 470

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 23/57 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       R +R E  L+Q  +      + S+++++E     + +  ++ ++     
Sbjct: 3  KTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGV 59


>gi|188587728|ref|YP_001920281.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska
          E43]
 gi|188498009|gb|ACD51145.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska
          E43]
          Length = 121

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
           N  +N R E KLT K++ + +G   S IS++ETGK+    +  +  LA +LD  +    
Sbjct: 5  GNFLKNKRIEKKLTLKDLSDLSGVGPSTISDIETGKALNPRMITLQKLASSLDISVNDFF 64

Query: 82 K 82
          +
Sbjct: 65 E 65


>gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM
          1552]
 gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM
          1552]
          Length = 206

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
          +     + +RKE  LTQ+++ N  G  +S I++ E  +   +  + +  L+   + P
Sbjct: 1  MTGQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVP 57


>gi|209551999|ref|YP_002283915.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209539592|gb|ACI59523.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 466

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      R +R   K  Q +   R G + S+++++E+ +  ++   ++ L       + 
Sbjct: 5  KLFIGKKVRELRLLHKANQSQFAERLGISTSYLNQIESNQRPVSAAVLLALVDKFQLDMS 64

Query: 79 KL 80
           L
Sbjct: 65 DL 66


>gi|126733832|ref|ZP_01749579.1| DNA-binding protein [Roseobacter sp. CCS2]
 gi|126716698|gb|EBA13562.1| DNA-binding protein [Roseobacter sp. CCS2]
          Length = 196

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + R IRK  K+T  ++ +  G +  W+S++E  KS   I ++  +A  LD  +   L
Sbjct: 19 LGADVRAIRKARKMTLIDLSDAMGRSVGWLSQVERDKSYPTIADLNKMAALLDVSVSSFL 78

Query: 82 K 82
          +
Sbjct: 79 Q 79


>gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1]
 gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1]
          Length = 470

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/57 (12%), Positives = 23/57 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +       R +R E  L+Q  +      + S+++++E     + +  ++ ++     
Sbjct: 3  KTFVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGV 59


>gi|19352384|ref|NP_598142.1| TrbA protein [uncultured bacterium]
 gi|58616620|ref|YP_195829.1| conjugal transfer protein TrbA [Achromobacter xylosoxidans A8]
 gi|19070051|emb|CAD24367.1| TrbA protein [uncultured bacterium]
 gi|58416218|emb|CAI47813.1| transcriptional regulator [Achromobacter xylosoxidans]
          Length = 119

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          IF  N   +  E  +T+KE+ +R+G + S++S+L TGK+  ++  M  +A 
Sbjct: 5  IFFTNVLRLLDERHMTKKELSDRSGVSISFLSDLTTGKANPSLKVMQDIAK 55


>gi|163940990|ref|YP_001645874.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863187|gb|ABY44246.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++  + G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRAKVHMTQEDLAKKVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 196

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             +RE  +     R +R+E +LT +E+   TG ++  +S++E  + T  I  ++ +A  
Sbjct: 5  KPEIRELKL-GEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVTPPIATLLKIAKG 63

Query: 73 LDT 75
          L  
Sbjct: 64 LKV 66


>gi|332637058|ref|ZP_08415921.1| hypothetical protein WcibK1_00055 [Weissella cibaria KACC 11862]
          Length = 127

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I   N + + K+ ++T   +    G + + IS+   GK+   ID +  +A        
Sbjct: 7  KAIMGRNIKRLIKQREITAARLAEIVGVSTATISDWSNGKTYPRIDKIEAMADYFGVSKS 66

Query: 79 KLLK 82
           L++
Sbjct: 67 DLVE 70


>gi|330831530|ref|YP_004394482.1| putative transcriptional regulator [Aeromonas veronii B565]
 gi|328806666|gb|AEB51865.1| Putative transcriptional regulator [Aeromonas veronii B565]
          Length = 180

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R +A L+Q+E+  R+G    +IS++E  + + ++ ++  +   +   L     
Sbjct: 4  GHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVASLRKVLEGIPMSLASFFT 63


>gi|325262169|ref|ZP_08128907.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324033623|gb|EGB94900.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 70

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +N R +R++  +TQ+++ N+    +  +S  E GK   +I  +I +A   D  L +L
Sbjct: 7  GHNIRLLRRKHHMTQEQVANKLYMKRQTLSNYEIGKRIPDIYEIIKIADLFDISLDEL 64


>gi|315576305|gb|EFU88496.1| helix-turn-helix protein [Enterococcus faecalis TX0309B]
 gi|315582797|gb|EFU94988.1| helix-turn-helix protein [Enterococcus faecalis TX0309A]
          Length = 427

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 3  GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54


>gi|317132885|ref|YP_004092199.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315470864|gb|ADU27468.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 113

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R    +TQ  + ++   +   I  +ETGK     + +  +   L  P   + +P
Sbjct: 15 ARISRGMTQTALADKIEVSLRTIIAIETGKRNPTFEVLYKIIQELSIPADLIFRP 69


>gi|307710856|ref|ZP_07647283.1| hypothetical protein SMSK321_1212 [Streptococcus mitis SK321]
 gi|307617301|gb|EFN96474.1| hypothetical protein SMSK321_1212 [Streptococcus mitis SK321]
          Length = 303

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P +
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601]
 gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601]
          Length = 133

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK+ + TQK++  R     S IS+ E G     +  +  LA  L T    LL
Sbjct: 21 FGQKVAQLRKKKRFTQKQLAERIDVTPSTISKYEHGTHRPPVFILAKLAEELGTTTDFLL 80

Query: 82 K 82
          +
Sbjct: 81 E 81


>gi|326442721|ref|ZP_08217455.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R +R+   +T +E+  R   +QS IS LE G+ +I+  ++  L    + 
Sbjct: 2  GLELRRLRELKGMTAEEVAERLLVSQSKISRLENGRRSISQRDVRDLCGVYEV 54


>gi|182434926|ref|YP_001822645.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326775443|ref|ZP_08234708.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|178463442|dbj|BAG17962.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|326655776|gb|EGE40622.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 32/54 (59%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R+ R++ +++Q E+  R   +   IS +ETG+S  + D ++ LA  L+ P+ +
Sbjct: 14 LRDWREQRRISQLELALRADSSARHISFIETGRSRPSEDMVLRLAEELNVPVRE 67


>gi|70729814|ref|YP_259553.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68344113|gb|AAY91719.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 283

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
               R +R++A+L+Q ++  + G +Q  +S +ETG++  +
Sbjct: 25 VGAQLRQLRRQARLSQLDLALQAGISQRHLSCVETGRAQPS 65


>gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK49]
          Length = 168

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|320324237|gb|EFW80316.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. glycinea str. B076]
          Length = 135

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + +R    LTQK + + +  +++++S+LE  +S++ +D +  L+ TL+    
Sbjct: 4  KTAFAAVLKAMRNSRGLTQKHLSDAS--SRTYLSKLERAQSSLTLDKLQALSQTLELSPL 61

Query: 79 KLL 81
           L+
Sbjct: 62 TLV 64


>gi|319441554|ref|ZP_07990710.1| putative transcription regulator [Corynebacterium variabile DSM
           44702]
          Length = 136

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 31/63 (49%)

Query: 19  RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R       R  R++A+ T +++      +  ++SELE G+  ++ + +  + H L   + 
Sbjct: 42  REALGTTLRAFREDARRTLRDLAVAASVSPGYLSELERGRKEVSSELLASICHALGVNVS 101

Query: 79  KLL 81
           +++
Sbjct: 102 RVI 104


>gi|262283491|ref|ZP_06061257.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA]
 gi|262260982|gb|EEY79682.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA]
          Length = 288

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +  +  +  RKE KL+QKE+ +  G   Q  IS LE G+ T   D +  LA  L   +
Sbjct: 4  LLASRLKQRRKELKLSQKELAD--GICKQGQISRLENGEYTPGSDLLHELAKRLKVSM 59


>gi|251788539|ref|YP_003003260.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537160|gb|ACT05781.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 82

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 32/71 (45%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++     E  + +   R  R    +TQ+ +       QS+I+++E G+  +++   + LA
Sbjct: 1  MASTYTTEYQLVIKTLREARIAKGITQEMLAQALERPQSFIAKVENGERRLDVVEFVQLA 60

Query: 71 HTLDTPLWKLL 81
            L     ++L
Sbjct: 61 RLLALDPAQVL 71


>gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM
          15053]
 gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM
          15053]
          Length = 367

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    R+E  +TQ+++    G ++S +S+ ETG +  +I  +  LA   +  +  L+
Sbjct: 7  GKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNAYPDICLLPELATLFNISVDTLM 65


>gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch
          Maree]
          Length = 370

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  +  +A   +  +
Sbjct: 2  EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          3502]
 gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str.
          ATCC 3502]
 gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall]
          Length = 370

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  +  +A   +  +
Sbjct: 2  EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|156741559|ref|YP_001431688.1| XRE family transcriptional regulator [Roseiflexus castenholzii
          DSM 13941]
 gi|156232887|gb|ABU57670.1| transcriptional regulator, XRE family [Roseiflexus castenholzii
          DSM 13941]
          Length = 119

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              ER       +  R+  +LTQ E+  R G + S+IS +E G+S+  I ++  LA   
Sbjct: 2  PSFNER--VGEVIKRKRQRDRLTQAELGGRIGVSGSYISSIENGQSSARIADIEALAVVF 59

Query: 74 DTPLWKLL 81
           T  + LL
Sbjct: 60 RTTAFDLL 67


>gi|325688604|gb|EGD30621.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK72]
 gi|328945288|gb|EGG39441.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1087]
          Length = 116

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK+  ++Q+E+  R      +I++LE     + I ++  +   L+    +  
Sbjct: 12 AQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVIAALELTPEEFF 70


>gi|325264845|ref|ZP_08131573.1| putative helix-turn-helix protein [Clostridium sp. D5]
 gi|324029834|gb|EGB91121.1| putative helix-turn-helix protein [Clostridium sp. D5]
          Length = 693

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  F      +R  + LTQ ++    G ++S  +  E GK T ++  +I +A      L
Sbjct: 2  AKTEFHERLTALRTGSSLTQTQMAELLGISRSTYANYEVGKRTPDLKMLIKIADVFTCSL 61

Query: 78 WKLL 81
           +L+
Sbjct: 62 DELV 65


>gi|297172231|gb|ADI23210.1| hypothetical protein [uncultured Gemmatimonadales bacterium
          HF0770_11C06]
          Length = 185

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
          F +  R  R+   ++ + +    G + +++S++E G     +   +  LA  L     +L
Sbjct: 6  FGSGIRQRRRTRNVSLRRLAQDAGLSGAYLSQIERGLVPPPSSAKIKALAVALGESPDEL 65

Query: 81 L 81
          +
Sbjct: 66 I 66


>gi|302541529|ref|ZP_07293871.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302459147|gb|EFL22240.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 286

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +PR      +L               R  R   +++Q E+  R   +   IS +ETG+S 
Sbjct: 7  LPRAPSRFRYLRGMTTVAPPGVGALLRAWRDRRRISQLELALRADSSARHISFIETGRSR 66

Query: 61 INIDNMIILAHTLDTPLWK 79
           + + ++ LA  LD P+ +
Sbjct: 67 PSQEMVLRLADHLDVPVRE 85


>gi|257867307|ref|ZP_05646960.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873640|ref|ZP_05653293.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801363|gb|EEV30293.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807804|gb|EEV36626.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 91

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+ A LTQ+E+       QS I+ +E G    + + +  LA  L   L
Sbjct: 36 LMKARESAGLTQRELAELAAVPQSTIARIERGD-NTSFETLSKLASALGKTL 86


>gi|254295523|ref|YP_003061545.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
 gi|254044054|gb|ACT60848.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 86

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R IR E  LTQ E+  R    Q+ IS+LE+G+    +  +  +   LD  L  + 
Sbjct: 11 VGDAIRKIRLEKGLTQTELAARVNVRQATISKLESGEPATRLSTLFDVLMALDMDLHIMP 70

Query: 82 KP 83
          KP
Sbjct: 71 KP 72


>gi|253690481|ref|YP_003019671.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
 gi|251757059|gb|ACT15135.1| transcriptional regulator, XRE family [Pectobacterium carotovorum
          subsp. carotovorum PC1]
          Length = 105

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68
          +   + R IF    ++ R    L+QK +    G     A + I+  E G    N+     
Sbjct: 2  NTRQQHRDIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTASR 61

Query: 69 LAHTLDTPL 77
          LA  LD PL
Sbjct: 62 LAEALDVPL 70


>gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus
          jensenii 27-2-CHN]
 gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1]
 gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii
          JV-V16]
 gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus
          jensenii 27-2-CHN]
 gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN]
 gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1]
 gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii
          JV-V16]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +R  A ++Q+E+ ++   ++  +S+ ETG S  +I  +  L+   D  +  ++
Sbjct: 6  ERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDYIV 63


>gi|225374593|ref|ZP_03751814.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans
          DSM 16841]
 gi|225213545|gb|EEG95899.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans
          DSM 16841]
          Length = 179

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 22/55 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              +  R    ++Q+ +   +G   + I + E G      D ++ +A+ L   +
Sbjct: 4  GEKIKYFRNMRGISQETLGQLSGINSATIKKYEYGIRNPKPDQLLKIANALGISI 58


>gi|110798931|ref|YP_697253.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
 gi|110673578|gb|ABG82565.1| DNA-binding protein [Clostridium perfringens ATCC 13124]
          Length = 223

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEARQKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|325969996|ref|YP_004246187.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
 gi|324025234|gb|ADY11993.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy]
          Length = 175

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 29/50 (58%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F+ +RKE KLTQ+++  R   +   +S  ETG +  ++D ++ +A   + 
Sbjct: 10 FKELRKEKKLTQEQVSVRLNVSNRTVSRWETGSTMPDLDVLMQMADFYEV 59


>gi|313668496|ref|YP_004048780.1| DNA-binding protein [Neisseria lactamica ST-640]
 gi|313005958|emb|CBN87415.1| putative DNA-binding protein [Neisseria lactamica 020-06]
          Length = 110

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                    RK + LTQ ++  R   +   +S LE G   + ++ ++ LA         
Sbjct: 7  QTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIFGCETAD 66

Query: 80 LL 81
          LL
Sbjct: 67 LL 68


>gi|258593006|emb|CBE69317.1| putative transcriptional regulator [NC10 bacterium 'Dutch
           sediment']
          Length = 104

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                   R+  K++Q+E+ +     Q  +S +E G   + I+ +  +A  L   L    
Sbjct: 39  VALEITRAREARKMSQRELADALKTKQQTVSRIERGAQNVTIETLDKIARALGRGLQVRF 98

Query: 82  KP 83
            P
Sbjct: 99  VP 100


>gi|312200129|ref|YP_004020190.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311231465|gb|ADP84320.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 273

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R+ R+ A ++ +++  + G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  LGDYIRDQRRAAHISLRQLAQQAGVSNPYLSQIERGLRKPSAEILQQIAKALRISAEVL 67


>gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 126

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  +++RK   +TQK+I +  G + S I   E  +   +++ +  +A   +  +  L
Sbjct: 1  MIGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQNRREPDLETVQKIADFFNVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|228938896|ref|ZP_04101496.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228971777|ref|ZP_04132398.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228978386|ref|ZP_04138763.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407]
 gi|228781403|gb|EEM29604.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407]
 gi|228787867|gb|EEM35825.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228820745|gb|EEM66770.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|326939396|gb|AEA15292.1| XRE family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 404

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLE 55


>gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus
          DSM 2366]
 gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366]
          Length = 109

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R +R++   +Q E+  R   +    S++ETG + INI  +  +A+  +     +
Sbjct: 3  IIGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLAQIANLFEVSTMDI 62

Query: 81 L 81
          +
Sbjct: 63 I 63


>gi|227873927|ref|ZP_03992147.1| transcriptional regulator [Oribacterium sinus F0268]
 gi|227840233|gb|EEJ50643.1| transcriptional regulator [Oribacterium sinus F0268]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R E  LTQ  +  R   ++  IS  E  KS  +I+++I+L+  L+  +  L+K
Sbjct: 4  GKKIKYYRNEKSLTQDNLAERIFVSRQTISNWENDKSYPDINSIILLSEVLEVSVDNLIK 63


>gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii
          269-3]
 gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US]
 gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1]
 gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153]
 gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii
          269-3]
 gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153]
 gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US]
 gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1]
          Length = 138

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +R  A ++Q+E+ ++   ++  +S+ ETG S  +I  +  L+   D  +  ++
Sbjct: 6  ERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDYIV 63


>gi|261403945|ref|YP_003240186.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10]
 gi|261280408|gb|ACX62379.1| transcriptional regulator, XRE family [Paenibacillus sp.
          Y412MC10]
          Length = 68

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E        R  RK   LTQ+E+  R+G + + +  +E G        +  +A  L+  L
Sbjct: 2  ENKQLAQRIRAFRKLKGLTQQELAERSGISLAVLGAIERGNRRAEEQMLAQIADVLEITL 61

Query: 78 WKL 80
           +L
Sbjct: 62 QEL 64


>gi|154498814|ref|ZP_02037192.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC
          29799]
 gi|150272204|gb|EDM99408.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC
          29799]
          Length = 198

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M      R  R+   +TQKE+       ++ +S++E   +  ++  +  LA  L  P
Sbjct: 1  MTLGQKIREARQSKGMTQKELVGDY-ITRNMLSKIENDSAIPSVRTLEYLAGALGFP 56


>gi|114567062|ref|YP_754216.1| hypothetical protein Swol_1542 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
 gi|114337997|gb|ABI68845.1| hypothetical protein Swol_1542 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 102

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 27/45 (60%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R +  L+QK++ ++ G  Q+ ++++E+G     I+ +  +A+ L 
Sbjct: 46 RLKHGLSQKKLADKLGVTQAMVAKMESGDYNYTIEQLWKIANKLG 90


>gi|119387177|ref|YP_918232.1| hypothetical protein Pden_4472 [Paracoccus denitrificans PD1222]
 gi|119377772|gb|ABL72536.1| protein of unknown function DUF955 [Paracoccus denitrificans
          PD1222]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R  R  A LTQ+   +R G +  ++S++E     ++   ++ LA      
Sbjct: 3  TQKIYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFSVD 62

Query: 77 L 77
          L
Sbjct: 63 L 63


>gi|116494490|ref|YP_806224.1| transcriptional regulator [Lactobacillus casei ATCC 334]
 gi|116104640|gb|ABJ69782.1| Predicted transcriptional regulator [Lactobacillus casei ATCC
          334]
          Length = 62

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN   +R   KLTQ+E+ +     +  I+ +E  K    +     LA  L+T + +L +
Sbjct: 3  NNIHALRMRQKLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAECLETTVDQLFQ 61


>gi|15672309|ref|NP_266483.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
 gi|116511183|ref|YP_808399.1| transcriptional regulator [Lactococcus lactis subsp. cremoris
          SK11]
 gi|281490873|ref|YP_003352853.1| Cro/CI family transcriptional regulator [Lactococcus lactis
          subsp. lactis KF147]
 gi|12723193|gb|AAK04425.1|AE006269_10 transcriptional regulator [Lactococcus lactis subsp. lactis
          Il1403]
 gi|116106837|gb|ABJ71977.1| Predicted transcriptional regulator [Lactococcus lactis subsp.
          cremoris SK11]
 gi|281374631|gb|ADA64151.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis
          subsp. lactis KF147]
 gi|300069966|gb|ADJ59366.1| Transcriptional regulator, Cro/CI family protein [Lactococcus
          lactis subsp. cremoris NZ9000]
 gi|326405905|gb|ADZ62976.1| Cro/CI family transcriptional regulator [Lactococcus lactis
          subsp. lactis CV56]
          Length = 97

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+ + L+Q+++ +    ++  I+ +E  K    +     LA TL T + +L 
Sbjct: 3  NKIRELRRLSHLSQEDVAHIAHVSRQTINAIENDKYDPELTLAFKLAETLGTTVDELF 60


>gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          aceris str. M302273PT]
          Length = 114

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     + +RK   ++Q ++    G     +S  E G +   I+ +I +A   +    
Sbjct: 5  RSVIGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTTLPGIEQLIRIATVFNVAPG 64

Query: 79 KLL 81
          +LL
Sbjct: 65 ELL 67


>gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334]
 gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334]
          Length = 194

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE KL+QKEI      ++  +S  E G+S I  +   +LA      +  LL
Sbjct: 2  NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQMLADFFGVHIGYLL 59


>gi|307705640|ref|ZP_07642491.1| hypothetical protein SMSK597_1597 [Streptococcus mitis SK597]
 gi|307620816|gb|EFN99901.1| hypothetical protein SMSK597_1597 [Streptococcus mitis SK597]
          Length = 303

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P +
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|253755143|ref|YP_003028283.1| DNA-binding protein [Streptococcus suis BM407]
 gi|251817607|emb|CAZ55354.1| putative DNA-binding protein [Streptococcus suis BM407]
          Length = 76

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQK + N   F+ +  +++E G+  +  D ++ L+   +     LL
Sbjct: 3  QRIRDLREDHDLTQKFVANLLSFSHTNYAKIERGEIALTADVLVQLSKLYNVSTDYLL 60


>gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
 gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876]
 gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W]
 gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          huazhongensis BGSC 4BD1]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 16 VIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 75

Query: 81 L 81
          L
Sbjct: 76 L 76


>gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM
          15897]
          Length = 378

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK   LTQ+++ N  G +   IS  E G    ++  +I L+ TLD  L +LL
Sbjct: 7  GKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIPLSETLDISLNELL 65


>gi|188585373|ref|YP_001916918.1| transcriptional regulator [Natranaerobius thermophilus
          JW/NM-WN-LF]
 gi|179350060|gb|ACB84330.1| transcriptional regulator [Natranaerobius thermophilus
          JW/NM-WN-LF]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            ++ R E +LTQ+++  R    +  IS +E GK   ++   + +   L   L  L 
Sbjct: 6  KIKSARLEQELTQEQLAKRVKATRQTISLIEAGKYNPSLKLCLAICKVLGKTLDDLF 62


>gi|163795463|ref|ZP_02189430.1| transcriptional regulator, XRE family protein [alpha
          proteobacterium BAL199]
 gi|159179449|gb|EDP63980.1| transcriptional regulator, XRE family protein [alpha
          proteobacterium BAL199]
          Length = 481

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 30/64 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L  + +  +  R  R +  L+Q E+  + G + S+++ +E  +  + +  +  L +  + 
Sbjct: 6  LDRKAMLGHKIRRFRLDQGLSQTEMAAQIGISPSYLNLIEHNQRPVTVPLLFKLGNAFEI 65

Query: 76 PLWK 79
           L +
Sbjct: 66 DLKE 69


>gi|134045177|ref|YP_001096663.1| XRE family transcriptional regulator [Methanococcus maripaludis
          C5]
 gi|132662802|gb|ABO34448.1| putative transcriptional regulator, XRE family [Methanococcus
          maripaludis C5]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 6  RDEPHLSDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +         + ER I +N  N +  R++ K+TQ ++   +G +QS +S LE GK  I
Sbjct: 3  KSGKMYDKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 60


>gi|89896146|ref|YP_519633.1| hypothetical protein DSY3400 [Desulfitobacterium hafniense Y51]
 gi|219670564|ref|YP_002460999.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89335594|dbj|BAE85189.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540824|gb|ACL22563.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 98

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     RKE  L+Q E+   +G  Q+ I+ LE  ++   +  ++ L + L   L
Sbjct: 31 SQIVEARKEKGLSQTELEAISGIKQTHIARLENNRNDPQLTTILKLLYPLGMTL 84


>gi|310827692|ref|YP_003960049.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612]
 gi|308739426|gb|ADO37086.1| hypothetical protein ELI_2103 [Eubacterium limosum KIST612]
          Length = 180

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          F  N R IR+E  ++Q+E+  +   ++  +S+ E G     ++
Sbjct: 3  FSENLRRIRRERGISQEELAEQLKVSRQAVSKWEQGNGYPEVE 45


>gi|302528211|ref|ZP_07280553.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302437106|gb|EFL08922.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 283

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R  A++  +E+  R G +   +S +E GK+ + ++ +  +A  L T    LL
Sbjct: 18 VRQARTRARMPLRELARRIGVSAGTLSAVENGKTGLTVERLGRIADALGTSAADLL 73


>gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus gasseri MV-22]
 gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus gasseri MV-22]
 gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus gasseri MV-22]
 gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family
          [Lactobacillus gasseri MV-22]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  R +R   +L+Q E+      +Q  I++ E GK+  +   +  LA   D     L
Sbjct: 1  MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|258655308|ref|YP_003204464.1| XRE family transcriptional regulator [Nakamurella multipartita DSM
           44233]
 gi|258558533|gb|ACV81475.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM
           44233]
          Length = 148

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 30/80 (37%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
             +   P  +      R +     R  R+    T  ++  R G +   +SE+E G+   +
Sbjct: 49  GTRTPGPAPARREPLWREVSGAVLREERRRQGRTLADVAGRAGMSVQHLSEVERGRKEAS 108

Query: 63  IDNMIILAHTLDTPLWKLLK 82
            + +   A +L   L +  +
Sbjct: 109 SEMLAAAAGSLGLSLAEFTR 128


>gi|195937967|ref|ZP_03083349.1| DNA-binding transcriptional repressor PuuR [Escherichia coli
          O157:H7 str. EC4024]
          Length = 174

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 1  MSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 56


>gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 215

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + +R +  L+   +  + G +++ ++++E+G+S  +I  +  +A  L   +   L
Sbjct: 35 VAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSVAAFL 94

Query: 82 K 82
          +
Sbjct: 95 E 95


>gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. B100]
 gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. ATCC 33913]
 gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris
          str. 8004]
 gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris]
 gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
 gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +R+ +  +Q E+  R G ++  I+ LETGK   ++     +A      +  + 
Sbjct: 3  SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60


>gi|150390025|ref|YP_001320074.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149949887|gb|ABR48415.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 64

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +RKE  L Q+++ N+ G  +  I  +E  K    ++  + LA  LDT + +L +
Sbjct: 3  NKLKTLRKELGLRQEDVANQLGVTRQTIIAIENDKYNPTLELAMKLARFLDTTVEELFQ 61


>gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 180

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 28/58 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   TG +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSLFITP 68


>gi|306834543|ref|ZP_07467656.1| transcriptional activator [Streptococcus bovis ATCC 700338]
 gi|304423345|gb|EFM26498.1| transcriptional activator [Streptococcus bovis ATCC 700338]
          Length = 283

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F   +++IR+   LTQ+EI +    A+S ++ +E G+     D  I L   ++  L 
Sbjct: 2  RWVFGKVYKDIRQSKGLTQEEICDDM-LARSTLARIEGGQVIPKFDTFIFLLQQINMNLE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|317152263|ref|YP_004120311.1| Cupin 2 barrel domain-containing protein [Desulfovibrio
          aespoeensis Aspo-2]
 gi|316942514|gb|ADU61565.1| Cupin 2 conserved barrel domain protein [Desulfovibrio
          aespoeensis Aspo-2]
          Length = 186

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+ R+  KL+ +++  RTG  + +I  +E      ++  ++ LA  L   L
Sbjct: 5  GTRIRSYRERQKLSIEDLAERTGLTEEFIQAVEGTDMYPSLRPLVKLARALGVRL 59


>gi|238892801|ref|YP_002917535.1| putative regulatory protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238545117|dbj|BAH61468.1| putative regulatory protein [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 76

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  + +   R+ R +  +TQ ++    G  QS+++++E G+  +++     +A  L    
Sbjct: 8  EYQLVIKLLRSARIDRGITQSQLAKSLGKPQSFVAKVENGERRLDVIEFAAIARLLSLDP 67

Query: 78 WKLL 81
           ++L
Sbjct: 68 AEIL 71


>gi|291302869|ref|YP_003514147.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290572089|gb|ADD45054.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 25 NFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
            R +R    LT  ++  R      T    + I  +E+G+  +++D  + LA  L  P  
Sbjct: 19 RLRQLRDRLGLTVDDVVERCRRLGATDVTDNIIWNIESGRRKLSLDVTVTLAAALGVPFM 78

Query: 79 KLLKP 83
           LL P
Sbjct: 79 SLLVP 83


>gi|209964154|ref|YP_002297069.1| DNA-binding protein, putative [Rhodospirillum centenum SW]
 gi|209957620|gb|ACI98256.1| DNA-binding protein, putative [Rhodospirillum centenum SW]
          Length = 100

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDT 75
          R R       + +R++  LTQ+E+ NR GF   ++I+++E G+  +  D     A  L  
Sbjct: 15 RLRRAGGVELKRLREDRGLTQRELANRVGFDYYTFIAQIEGGRGRLPPDRYQSYADALGV 74

Query: 76 PLWKLLK 82
          P     +
Sbjct: 75 PHQDFAR 81


>gi|254385028|ref|ZP_05000362.1| regulatory protein [Streptomyces sp. Mg1]
 gi|194343907|gb|EDX24873.1| regulatory protein [Streptomyces sp. Mg1]
          Length = 182

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+   LT   +  R+G +  ++S++E  ++  ++ ++  +A  L+T   +LL
Sbjct: 5  VRKRRRALHLTLAAVSARSGLSVPFLSQIENERARPSMRSLERVADALETTAVELL 60


>gi|169350485|ref|ZP_02867423.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM
          1552]
 gi|169292805|gb|EDS74938.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM
          1552]
          Length = 117

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N   +RK+  L+Q+++  +    +  IS  E+  +  N + +  L+   D  + +
Sbjct: 1  MTLGENILKLRKKQGLSQEQLGYQIDVTRQTISNWESEDTAPNPEQLKRLSKVFDISVDE 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|160939581|ref|ZP_02086929.1| hypothetical protein CLOBOL_04473 [Clostridium bolteae ATCC
          BAA-613]
 gi|158437372|gb|EDP15136.1| hypothetical protein CLOBOL_04473 [Clostridium bolteae ATCC
          BAA-613]
          Length = 366

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R +   N + IR+   L+Q+    + G + S IS  ETG S  + + ++ L    D  +
Sbjct: 27 ARRVLKTNIKKIREVEGLSQEAFGKKYGKSMSSISNYETGMSLPSFEFLLTLREQYDFSM 86

Query: 78 WKLLK 82
           + + 
Sbjct: 87 EEFIT 91


>gi|117617483|ref|YP_854772.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
          7966]
 gi|117558890|gb|ABK35838.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
          7966]
          Length = 180

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 30/55 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  + +R +A L+Q+E+  R+G    +IS++E  + + ++ ++  +   +   L
Sbjct: 4  GHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVASLRKVLEGIPMSL 58


>gi|104781316|ref|YP_607814.1| transcriptional regulator [Pseudomonas entomophila L48]
 gi|95110303|emb|CAK15010.1| putative transcriptional regulator [Pseudomonas entomophila L48]
          Length = 186

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R++RK    T  ++  R   +  ++S++E G S   + ++  ++  L  P
Sbjct: 11 LARLVRDLRKHRGFTLDDLATRMNRSVGFLSQVERGLSRPTVADLTAISEALQVP 65


>gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 142

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 1  MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|152975865|ref|YP_001375382.1| XRE family transcriptional regulator [Bacillus cereus subsp.
          cytotoxis NVH 391-98]
 gi|152024617|gb|ABS22387.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH
          391-98]
          Length = 66

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F+   +  R    +TQ+++  R G  +  IS LE GK   ++     +A TL T + +
Sbjct: 1  MAFITKIKEARARLHMTQEDLAKRVGVRRETISHLEKGKYNPSLQLAHDIAKTLQTTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 IF 62


>gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum
          WAL-14163]
 gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum
          WAL-14163]
          Length = 129

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              RKE  +TQ E+  + G     +S+ E   S  +++++  LA      + +L++
Sbjct: 3  IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLSYPDVNSLPKLAGIFGISVDQLMQ 59


>gi|320178346|gb|EFW53317.1| repressor protein c2, putative [Shigella boydii ATCC 9905]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77
                  N R++A LTQ  +  + G  +  IS+ E G   + N D +  +A  L    
Sbjct: 2  KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60


>gi|295107458|emb|CBL05001.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 79

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R E  LTQ+E+  R G  QS  + LE+G +   +  +  +A  L   L
Sbjct: 26 ARAEQNLTQRELAERCGMRQSAFARLESGNANPTLKTLQQVAKGLGKKL 74


>gi|291525638|emb|CBK91225.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
 gi|291540997|emb|CBL14108.1| Predicted transcriptional regulators [Roseburia intestinalis
          XB6B4]
          Length = 116

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R+IR +   TQ ++      +    S++E G+  ++++ M+ +          L 
Sbjct: 8  VGNTLRSIRNKYGYTQNDMAESLDVSYIHYSQIEQGRHRMSLELMLKIVTKYGVDPNTLF 67


>gi|256374197|ref|YP_003097857.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255918500|gb|ACU34011.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 460

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R +R+   ++Q++I   TG +QS +SE+  G+  +  D +  +A+ L  P
Sbjct: 34 YRLLRR-HGVSQRQIAALTGQSQSEVSEILKGRQVMAYDVLTRIANGLGVP 83


>gi|222147026|ref|YP_002547983.1| transcriptional regulator [Agrobacterium vitis S4]
 gi|221734016|gb|ACM34979.1| transcriptional regulator [Agrobacterium vitis S4]
          Length = 131

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F +  R +R+   ++QK++    G   +++S LE G+    + D +  +A   + 
Sbjct: 4  FGDAVRGLRERKGVSQKDMAKAIGVTPAYLSALEHGRRGKPSFDLLQRIAGYFNI 58


>gi|209919283|ref|YP_002293367.1| putative phage repressor [Escherichia coli SE11]
 gi|209912542|dbj|BAG77616.1| hypothetical phage repressor [Escherichia coli SE11]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77
                  N R++A LTQ  +  + G  +  IS+ E G   + N D +  +A  L    
Sbjct: 2  KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60


>gi|254390294|ref|ZP_05005512.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294811246|ref|ZP_06769889.1| putative AfsR-like transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
 gi|197703999|gb|EDY49811.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294323845|gb|EFG05488.1| putative AfsR-like transcriptional regulator [Streptomyces
          clavuligerus ATCC 27064]
          Length = 759

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +RK +   + D I      F +  R  RKEA+++  E+  R  +++ ++S +ETGK++ +
Sbjct: 8  KRKVELFAMDDPIN-----FGSELRRRRKEAQMSISEMARRVHYSKGYLSRVETGKASGS 62

Query: 63 IDNMIILAHTLDTPL 77
                LA   D  L
Sbjct: 63 ----PALAQACDREL 73


>gi|188491927|ref|ZP_02999197.1| repressor protein C2 [Escherichia coli 53638]
 gi|194434099|ref|ZP_03066368.1| repressor protein C2 [Shigella dysenteriae 1012]
 gi|188487126|gb|EDU62229.1| repressor protein C2 [Escherichia coli 53638]
 gi|194417643|gb|EDX33743.1| repressor protein C2 [Shigella dysenteriae 1012]
 gi|332096959|gb|EGJ01947.1| repressor protein C2 [Shigella dysenteriae 155-74]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77
                  N R++A LTQ  +  + G  +  IS+ E G   + N D +  +A  L    
Sbjct: 2  KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60


>gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
 gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra]
          Length = 370

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  + ++A   +  +
Sbjct: 2  EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|163869009|ref|YP_001610239.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
 gi|161018686|emb|CAK02244.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
          Length = 146

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P      PH +D  +          R  RK  K++QKE+ +R G     I + E G + +
Sbjct: 6  PYFPTKNPHSNDISI------GRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRV 59

Query: 62 NIDNMIILAHTLDTPLW 78
              +  +A  LD  ++
Sbjct: 60 GAGRLQEIADILDISIF 76


>gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str.
          Langeland]
 gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str.
          230613]
          Length = 370

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 35/64 (54%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+++       +RKE  +TQ+++ N  G + + +S+ E+G S  +I  + ++A   +  +
Sbjct: 2  EKLLIGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTI 61

Query: 78 WKLL 81
            LL
Sbjct: 62 DTLL 65


>gi|30019824|ref|NP_831455.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579]
 gi|229127108|ref|ZP_04256105.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
 gi|29895369|gb|AAP08656.1| Transcriptional regulator, XRE family [Bacillus cereus ATCC
          14579]
 gi|228656224|gb|EEL12065.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4]
          Length = 404

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLE 55


>gi|29377017|ref|NP_816171.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29344483|gb|AAO82241.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
          Length = 427

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 3  GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54


>gi|18249875|ref|NP_543063.1| putative lambda repressor [Enterobacteria phage phiP27]
 gi|18152342|emb|CAC83529.1| putative lambda repressor [Enterobacteria phage phiP27]
          Length = 218

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPL 77
                  N R++A LTQ  +  + G  +  IS+ E G   + N D +  +A  L    
Sbjct: 2  KSLGERLINARQKAGLTQDALAKKAGVTRVAISKAEQGLTKSFNGDTLFKVAAALQCSP 60


>gi|75761795|ref|ZP_00741729.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228900366|ref|ZP_04064595.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
 gi|74490707|gb|EAO53989.1| Transcriptional regulator, Xre family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228859253|gb|EEN03684.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222]
          Length = 404

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               + +RKE KLTQ  +   +   +S +S++E GK+T ++  +  +A  L+
Sbjct: 4  LGEKIKALRKEKKLTQTALAG-SELTKSMLSQIENGKATPSMKTLQYIAEKLE 55


>gi|30265072|ref|NP_847449.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47778382|ref|YP_021927.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|65317017|ref|ZP_00389976.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165870871|ref|ZP_02215523.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|228930058|ref|ZP_04093068.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228948759|ref|ZP_04111036.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229124568|ref|ZP_04253753.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201]
 gi|30259749|gb|AAP28935.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47552087|gb|AAT34402.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|164713380|gb|EDR18905.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|228658908|gb|EEL14563.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201]
 gi|228810891|gb|EEM57235.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228829557|gb|EEM75184.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
          Length = 79

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +AH  + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|332637654|ref|ZP_08416517.1| hypothetical protein WcibK1_03097 [Weissella cibaria KACC 11862]
          Length = 70

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R  R    LTQKE+ N  G  +  I+ +E G     +   I +A  LDT L  L 
Sbjct: 3  NSVRKYRTLKGLTQKELANAIGVTRQTIALIEKGTYNPTMKLAIAIATQLDTDLNSLF 60


>gi|302134931|ref|ZP_07260921.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato NCPPB 1108]
          Length = 134

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++ F    + +R    LTQ+ +   +  +++++S+LE  +S+  ++ +  L+  L     
Sbjct: 4  KIAFAAVLKAMRAGKGLTQRNLAEVS--SRTYVSKLERAQSSPTLEMISALSGPLSINPL 61

Query: 79 KLL 81
           L+
Sbjct: 62 SLV 64


>gi|299536255|ref|ZP_07049568.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298728241|gb|EFI68803.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 388

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 19 RMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          + IF     +  R   KL+  E+  +    +  +S+ E+GKS  + +  ++L   L  P
Sbjct: 2  KKIFNGQRLKEARLYNKLSITELAEKLNVTKQMVSKYESGKSDPSFEKSLLLTDILGYP 60


>gi|291485970|dbj|BAI87045.1| transcriptional regulator [Bacillus subtilis subsp. natto
          BEST195]
          Length = 152

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +     R  RK    +  ++   +G ++S++S++E G     ++  +  ++ TL+  L +
Sbjct: 1  MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|269218392|ref|ZP_06162246.1| DNA-binding protein [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212251|gb|EEZ78591.1| DNA-binding protein [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 99

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 11 LSDAILRERM---IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-------- 59
          + D+   ER    IF    R  RKE  L+Q+++  R    ++    +E+ +S        
Sbjct: 1  MPDSSPLERQLANIFAMTIRARRKELGLSQEQVALRADIDRNHYQLMESARSDRRSNKAV 60

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
             +  +  LA+ L+ P+  LL
Sbjct: 61 NPRLFTLFRLANALELPVEDLL 82


>gi|256958187|ref|ZP_05562358.1| transcriptional regulator [Enterococcus faecalis DS5]
 gi|256948683|gb|EEU65315.1| transcriptional regulator [Enterococcus faecalis DS5]
          Length = 427

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    +   L+
Sbjct: 3  GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIIDVLN 54


>gi|326204396|ref|ZP_08194254.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325985428|gb|EGD46266.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 86

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R IR E  LTQ E+  R G  + +I  +E+G +T + +   I+A +LD   +
Sbjct: 5  LRKIRDELNLTQAEVAKRVGVTRQFIGMIESGAATPHPETAKIIATSLDLEKY 57


>gi|256848201|ref|ZP_05553644.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
 gi|256714799|gb|EEU29777.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
          Length = 76

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKLL 81
            N  + R E  + Q+++   +  + ++IS++E G +  I    +  LA  L+  + +L+
Sbjct: 5  GINVASRRHELGMIQEKLAELSDLSINFISKVERGAATDIKAGTLQSLAKALNVSMDELM 64


>gi|240851106|ref|YP_002972508.1| transcriptional regulator [Bartonella grahamii as4aup]
 gi|240268229|gb|ACS51817.1| transcriptional regulator [Bartonella grahamii as4aup]
          Length = 157

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +     R+ R    L+QK + +  G +   I + E G + ++   ++ +A  L+ P+
Sbjct: 46  LIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEKGLNRVSAKCLLEIAQKLEVPI 102


>gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
 gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
          Length = 64

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R +R  A L+Q+ +  R G ++  I+ +E G+   ++   I LA      + ++ 
Sbjct: 3  NDVRELRGSAGLSQQALGERLGVSRQTINAIEQGRYDPSLPLAIRLARFFGRTVEEVF 60


>gi|194397827|ref|YP_002037955.1| putative transcriptional activator [Streptococcus pneumoniae G54]
 gi|194357494|gb|ACF55942.1| putative transcriptional activator [Streptococcus pneumoniae G54]
          Length = 287

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE  L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRXKRKEXXLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|163741613|ref|ZP_02149004.1| hypothetical protein RG210_19665 [Phaeobacter gallaeciensis 2.10]
 gi|161385347|gb|EDQ09725.1| hypothetical protein RG210_19665 [Phaeobacter gallaeciensis 2.10]
          Length = 171

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +  R++A  T ++   R G + +  S +E G S + +D + +LA   +     L++
Sbjct: 38 QTLKQAREQAGFTLEQAAERIGISGASFSRMENGLSKVTMDRLEMLAALYEVSASALVE 96


>gi|161525495|ref|YP_001580507.1| helix-turn-helix domain-containing protein [Burkholderia
          multivorans ATCC 17616]
 gi|160342924|gb|ABX16010.1| helix-turn-helix domain protein [Burkholderia multivorans ATCC
          17616]
          Length = 98

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +       R +RK   L+Q+   + +  +++++S LE    +  +  +  L   +D  
Sbjct: 3  TAKHSLATAIRTVRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTMHKLTELCEVMDVH 60

Query: 77 LWKLLK 82
             LL 
Sbjct: 61 PLTLLT 66


>gi|154509075|ref|ZP_02044717.1| hypothetical protein ACTODO_01592 [Actinomyces odontolyticus ATCC
          17982]
 gi|293192294|ref|ZP_06609405.1| putative Helix-turn-helix domain protein [Actinomyces
          odontolyticus F0309]
 gi|153798709|gb|EDN81129.1| hypothetical protein ACTODO_01592 [Actinomyces odontolyticus ATCC
          17982]
 gi|292820209|gb|EFF79203.1| putative Helix-turn-helix domain protein [Actinomyces
          odontolyticus F0309]
          Length = 104

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R IR+    T +E+ +    +  ++SE+E G+   + + +  +   L  PLW
Sbjct: 12 RSELGDVLRGIRQRQGRTLREVSSEAQVSLGYLSEVERGQKEASSELLEAITSALRVPLW 71

Query: 79 KLLK 82
           +L+
Sbjct: 72 FVLR 75


>gi|121607724|ref|YP_995531.1| anaerobic benzoate catabolism transcriptional regulator
          [Verminephrobacter eiseniae EF01-2]
 gi|121552364|gb|ABM56513.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Verminephrobacter eiseniae EF01-2]
          Length = 315

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           +      +A     +      R +R +  LT+K +    G ++  ++ LE G    +I 
Sbjct: 17 PQAAAPTDEAKNPLLVALGERVRKLRAQRGLTRKAVALAAGISERHLANLEYGTGNASIL 76

Query: 65 NMIILAHTLDTPLWKL 80
           +  +A  L   L +L
Sbjct: 77 VLQQVAGALHCSLAEL 92


>gi|90415002|ref|ZP_01222963.1| hypothetical helix-turn-helix XRE-family like protein
          [Photobacterium profundum 3TCK]
 gi|90323872|gb|EAS40475.1| hypothetical helix-turn-helix XRE-family like protein
          [Photobacterium profundum 3TCK]
          Length = 115

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +R       R  R+  +LTQ +I    G A+    ++ETGK+      ++ +A  L T 
Sbjct: 17 TDRKALAQRIRVARECRELTQVKIAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTD 76

Query: 77 LWKLLK 82
             LL 
Sbjct: 77 YRFLLT 82


>gi|27817699|emb|CAD61126.1| putative transcription regulator [Cupriavidus oxalaticus]
          Length = 97

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + IRK   L+Q+   + +  +++++S LE    +  ++ +  L   ++   
Sbjct: 3  AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|27365376|ref|NP_760904.1| putative transcriptional regulator [Vibrio vulnificus CMCP6]
 gi|27361523|gb|AAO10431.1| Predicted transcriptional regulator [Vibrio vulnificus CMCP6]
          Length = 76

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  + R +  L+  +   + GF++ ++ ++E     I ++ +  LA  LD  +  LL
Sbjct: 9  AQNIIDKRTKIGLSSSDASIKAGFSRGYLGKVERDGVRITVEKLYQLARVLDCEVTDLL 67


>gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK115]
 gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK160]
 gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1057]
          Length = 94

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR++   +Q +I    G  +  IS  E  K+ ++  ++I LA      L +L
Sbjct: 1  MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSVSLIRLADFYQISLDEL 60


>gi|325299457|ref|YP_004259374.1| helix-turn-helix domain-containing protein [Bacteroides
          salanitronis DSM 18170]
 gi|324319010|gb|ADY36901.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM
          18170]
          Length = 96

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PRR + E  L+       +      RN R+  K+TQ ++  + G  +S+IS++E+    +
Sbjct: 20 PRRDKIEAELAS------LRVGIQIRNAREARKMTQSQLAEKIGKERSFISKVESDGKNL 73

Query: 62 NIDNMIIL 69
           +  +  +
Sbjct: 74 TLSTLYDI 81


>gi|312194192|ref|YP_004014253.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311225528|gb|ADP78383.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                   +R+E+ LT  E+  R+G +Q  IS++E  + T +  +++  A  LD P
Sbjct: 15 ETVGAALARLRRESGLTGVEVAKRSGVSQGQISKIENSRVTPSQADVVRFAGALDLP 71


>gi|290956627|ref|YP_003487809.1| regulator protein [Streptomyces scabiei 87.22]
 gi|260646153|emb|CBG69246.1| putative regulator protein [Streptomyces scabiei 87.22]
          Length = 410

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTP 76
          + +         R+    TQ  +    G +  W+S++E G +    ID +  LA  L  P
Sbjct: 6  DHLSIGQRIAFYRERRGYTQPVLAGLVGHSTDWLSKIERGVRKPPRIDKLAELARVLRVP 65

Query: 77 LWKLL 81
          L  L+
Sbjct: 66 LSDLM 70


>gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra]
 gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra]
          Length = 149

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RKE  +TQ+E+    G + S +   ET     + + +  +A         L
Sbjct: 1  MLNERIKKLRKERDITQEELAKNIGVSTSMVGMYETNARKPSYEVLSKIAKYFRVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|167957582|ref|ZP_02544656.1| UDP-N-acetylglucosamine transferase [candidate division TM7
          single-cell isolate TM7c]
          Length = 508

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  +  R     TQ ++      +QS I+ +E G   I+++ +  +   L  P+  +
Sbjct: 11 GNLIQENRIMRGWTQAQLAEALDTSQSAINRIEKGGQNISLEMIARIGEVLARPIVNI 68


>gi|164686229|ref|ZP_02210259.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM
          16795]
 gi|164601831|gb|EDQ95296.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM
          16795]
          Length = 60

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +  + +R+E  L QK +    G   S+   +E G    ++D  I +    D  + ++ +
Sbjct: 2  SKLKQLREERGLPQKAVAKSVGITTSYYGMIELGTRRPSLDLAIRICKYFDLSVEEVFE 60


>gi|161503250|ref|YP_001570362.1| hypothetical protein SARI_01318 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864597|gb|ABX21220.1| hypothetical protein SARI_01318 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 200

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R++ K++  E+   +G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRRQKKISLDELSRLSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|157370308|ref|YP_001478297.1| DNA-binding transcriptional repressor PuuR [Serratia
          proteamaculans 568]
 gi|157322072|gb|ABV41169.1| transcriptional regulator, XRE family [Serratia proteamaculans
          568]
          Length = 185

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L
Sbjct: 9  GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSL 63


>gi|460026|gb|AAC98432.1| repressor protein [Streptococcus pneumoniae]
 gi|183217361|gb|ACC59280.1| putative transcriptional regulator [Streptococcus pneumoniae]
 gi|218473421|emb|CAV31131.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 75

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRN-RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQ+ +        +S  S++E+G   I+ID++I LA   +  L  L+
Sbjct: 3  KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLV 61


>gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1056]
          Length = 169

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 4  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 63


>gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505]
          Length = 206

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R E  LTQ  +    G  Q  + ++E+G ST N  N+  LA  LD     
Sbjct: 1  MSVGERIKKRRVELGLTQANLAELAGIIQQSLQKIESG-STKNPRNLKALADALDCTPEF 59

Query: 80 L 80
          L
Sbjct: 60 L 60


>gi|329939039|ref|ZP_08288413.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus
          M045]
 gi|329301924|gb|EGG45817.1| helix-turn-helix domain protein [Streptomyces griseoaurantiacus
          M045]
          Length = 249

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  + +Q+E+ NR+  +   +S +ETG++    + ++ LA  LD PL +
Sbjct: 5  LRGWRERRRFSQQELSNRSAVSTRHLSRVETGRARPTPEMILHLADHLDVPLRE 58


>gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK160]
          Length = 167

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|311110859|ref|ZP_07712256.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri
          MV-22]
 gi|311066013|gb|EFQ46353.1| helix-turn-helix domain-containing protein [Lactobacillus gasseri
          MV-22]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80
               +  R+  ++TQ+++   +  + ++IS++E  G   I+I  +  +A  L T +  L
Sbjct: 12 LGAAIKKRRRSLRMTQEDLAEFSSLSVNFISKIERTGNQNISIQKLDTIAKALQTSVITL 71

Query: 81 L 81
          +
Sbjct: 72 I 72


>gi|304407914|ref|ZP_07389564.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304342933|gb|EFM08777.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 72

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +N R++R     +TQ+++ +  G  +  I  +E GK + +++    +A      L ++  
Sbjct: 8  SNIRSLRFNHGEMTQQQLADLVGVTRQTIVAIEKGKYSPSLELAFRIARVFKLSLEEVFT 67


>gi|302519226|ref|ZP_07271568.1| DNA-binding protein [Streptomyces sp. SPB78]
 gi|302428121|gb|EFK99936.1| DNA-binding protein [Streptomyces sp. SPB78]
          Length = 279

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            + + + R       R+ R+ A  TQ  +  R   +Q+ +S +E+GK T ++ ++ ++ 
Sbjct: 4  DPETLGQSRNDLAEMLRDQRRRAGKTQTWLARRCAMSQTKVSNIESGKLTPSLLDVEMML 63

Query: 71 HTLDT 75
            L  
Sbjct: 64 EALGV 68


>gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 255

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R +  ++Q E+  +   ++  +S  E G++  N + + +L+   D  +  LL
Sbjct: 9  ELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLL 62


>gi|226328630|ref|ZP_03804148.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198]
 gi|225203363|gb|EEG85717.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198]
          Length = 97

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     R++R+   +T  E+    G +Q   S  E G++ I+ + +  L++  D     
Sbjct: 12 KLVGKKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLYCLSYFFDVEPEY 71

Query: 80 LL 81
           L
Sbjct: 72 FL 73


>gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella
          piezotolerans WP3]
 gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3]
          Length = 328

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+   +Q+++  +   ++  +S+ E+  S  +++ +I LA   +     
Sbjct: 1  MILADKIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSIPDLNRIITLAEIFEVSTDF 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|169830936|ref|YP_001716918.1| XRE family transcriptional regulator [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637780|gb|ACA59286.1| putative transcriptional regulator, XRE family [Candidatus
          Desulforudis audaxviator MP104C]
          Length = 91

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R +  +TQ  +  R G  QS I+ LE+G++  +I  +  +A+ LD  L   ++P
Sbjct: 37 RVKMGVTQAALAARIGTTQSVIARLESGRANPSIAFLKKIANALDADLDVSIRP 90


>gi|167462392|ref|ZP_02327481.1| hypothetical protein Plarl_07505 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 78

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            F+  RK+  ++Q+++    G ++S I  +E+G+   ++  +  LA   +T   +L 
Sbjct: 7  QQFQIFRKKYNVSQRKVSIDLGVSESHIRNIESGRGNPDVILLFKLAKYFNTSPEELF 64


>gi|119433803|gb|ABL74963.1| TlmR2 [Streptoalloteichus hindustanus]
          Length = 399

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                 RK A L Q ++  R   + S + ++E G    N   +  +A  L  P  KL
Sbjct: 10 GRTIARFRKAAGLNQHQLAARANISLSLLQKVEIGDRAANHSTIAGVARALHLPPEKL 67


>gi|123441160|ref|YP_001005148.1| putative transcriptional regulatory protein [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|122088121|emb|CAL10909.1| putative transcriptional regulatory protein [Yersinia
          enterocolitica subsp. enterocolitica 8081]
          Length = 196

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    +T K++  + G ++S +S+LE   ++ ++  +  LA  L+T +  L+
Sbjct: 15 LGMRLRHARVAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74


>gi|116249777|ref|YP_765615.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae
          3841]
 gi|241206954|ref|YP_002978050.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|115254425|emb|CAK05499.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
          viciae 3841]
 gi|240860844|gb|ACS58511.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 125

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
          F    R +R    ++QKE+      + +++S LE GK      D +  +A   + 
Sbjct: 4  FGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58


>gi|114799059|ref|YP_759118.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114739233|gb|ABI77358.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 143

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          LSDA   +R +     R  R    LTQ ++ +  G +   I + ETG + I+   +  +A
Sbjct: 6  LSDANQVDRQV-GERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQIA 64

Query: 71 HTLDT 75
            L+ 
Sbjct: 65 EVLEV 69


>gi|39995474|ref|NP_951425.1| transcriptional regulator [Geobacter sulfurreducens PCA]
 gi|39982237|gb|AAR33698.1| transcriptional regulator, putative [Geobacter sulfurreducens
          PCA]
 gi|298504474|gb|ADI83197.1| transcriptional regulator, XRE family [Geobacter sulfurreducens
          KN400]
          Length = 306

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMII 68
          H          I     R IR+  +LTQ  + +  G     IS  E  +  ++  DN   
Sbjct: 7  HSDRTPTPIVAIDGTTIRRIREAKRLTQLYVASVVGVTTDTISRWENNRYPSVKRDNAEK 66

Query: 69 LAHTLDTPLWKLLK 82
          LA  L+  L  +L+
Sbjct: 67 LAQALEVSLEDILR 80


>gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH
          domain [marine actinobacterium PHSC20C1]
 gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH
          domain [marine actinobacterium PHSC20C1]
          Length = 73

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN R +R+   LTQ E+  R G  +  +  +E G+ +  ++    ++    T L  + 
Sbjct: 9  NNIRALREAEGLTQAELARRIGVTRQTLIAIEQGRYSPTLELAFQISRNFGTGLDDVF 66


>gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 148

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE KLTQ+E+    G ++  I   E G+  I  D    LA   +  +  LL
Sbjct: 2  NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLL 59


>gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea
          ananatis AJ13355]
          Length = 181

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  + +R+    +      +TG +++ + ++E G+S+  +  +  +A   + P
Sbjct: 8  LGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62


>gi|239981315|ref|ZP_04703839.1| helix-turn-helix domain-containing protein [Streptomyces albus
          J1074]
          Length = 105

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                +R+   LTQ+E+ +R G ++  IS++E G  +   + +   A  L 
Sbjct: 37 GRKLAELRRARGLTQQEVADRMGVSKGRISQIERGHLSGQ-EVLARFATALG 87


>gi|255284008|ref|ZP_05348563.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
 gi|255265461|gb|EET58666.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bryantella formatexigens DSM 14469]
          Length = 112

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R+   LTQ E+       ++  S  E  K   + + ++++A     P+  L+
Sbjct: 6  LGKKLRALRERRHLTQAEVSALLHIERAAYSNYENDKRIPSFETLLLIADFYGVPVEYLI 65

Query: 82 K 82
          +
Sbjct: 66 R 66


>gi|222151832|ref|YP_002560992.1| hypothetical protein MCCL_1589 [Macrococcus caseolyticus
          JCSC5402]
 gi|222120961|dbj|BAH18296.1| conserved hypothetical protein [Macrococcus caseolyticus
          JCSC5402]
          Length = 415

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  RN+RKE KLT + +       +  +S +E  K+  +++++  +A  L T +  LL
Sbjct: 4  LGSRIRNLRKEKKLTLEALAGDY-MTKGMLSLIENNKNNPSMESLEYIAERLGTSVSALL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|222081941|ref|YP_002541306.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221726620|gb|ACM29709.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 471

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + ER IF     R +R    +TQ  + +    + S+++ +E  +  + +  ++ L+    
Sbjct: 1  MVERKIFAGPKVRRVRNGLGMTQIAMADALEISPSYLNLIERNQRPLTVQLLLKLSSAFK 60

Query: 75 TPLWKL 80
            L  L
Sbjct: 61 IDLDDL 66


>gi|197285845|ref|YP_002151717.1| transcriptional regulator [Proteus mirabilis HI4320]
 gi|194683332|emb|CAR44039.1| putative transcriptional regulator [Proteus mirabilis HI4320]
          Length = 375

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +N R  R   +L+ +++  R G  + +I  LE+G +    +    LA  L  
Sbjct: 4  GSNLRLARLYHELSLEQVAERVGKTRQYIQRLESGYALPTKELTDELAFVLQV 56


>gi|167771894|ref|ZP_02443947.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM
          17241]
 gi|167665692|gb|EDS09822.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM
          17241]
          Length = 188

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N +  RK+  ++ +E+ +    + S++S++E  K+  ++  +  ++  L   + KLL
Sbjct: 4  LGMNIKAERKKQNISLQELASWVQVSTSFLSQIENEKNEPSLTTLKRISTCLGVTVSKLL 63


>gi|90962618|ref|YP_536534.1| Cro/CI family transcriptional regulator [Lactobacillus salivarius
          UCC118]
 gi|90821812|gb|ABE00451.1| Transcriptional regulator, Cro/CI family [Lactobacillus
          salivarius UCC118]
 gi|300215223|gb|ADJ79639.1| Transcriptional regulator, Cro/CI family [Lactobacillus
          salivarius CECT 5713]
          Length = 267

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  + +R E   TQKEI       +  +S  E G     +     LA+  + P+  L
Sbjct: 2  NRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYL 58


>gi|52079830|ref|YP_078621.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
 gi|52785200|ref|YP_091029.1| YqaE [Bacillus licheniformis ATCC 14580]
 gi|52003041|gb|AAU22983.1| probable transcriptional regulator (phage-related) [Bacillus
          licheniformis ATCC 14580]
 gi|52347702|gb|AAU40336.1| YqaE [Bacillus licheniformis ATCC 14580]
          Length = 122

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F +  R +RK    L+QK++    G A+S IS  E  +     + +I +A   D  +  L
Sbjct: 3  FGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSIDYL 62

Query: 81 LK 82
          L+
Sbjct: 63 LR 64


>gi|42779585|ref|NP_976832.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47567216|ref|ZP_00237930.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|42735501|gb|AAS39440.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|47556059|gb|EAL14396.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
          Length = 83

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T 
Sbjct: 15 VRRKDVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTT 74

Query: 77 LWKLL 81
          + KL 
Sbjct: 75 VDKLF 79


>gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1057]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK405]
 gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK678]
 gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK353]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3]
 gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3]
          Length = 71

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ +  R   +LTQ ++      ++  IS +E G+   +++    LA   D  +  + +P
Sbjct: 3  NDLKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYNPSLELAFHLAEYFDCSIEDIFEP 62


>gi|289642438|ref|ZP_06474584.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289507783|gb|EFD28736.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 120

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R++   T +E+ +    +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRMLGEALRRRRQDQHRTLREVSSNARVSLGYLSEIERGQKEASSELLASICDALGVRLA 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 DLLR 68


>gi|257877769|ref|ZP_05657422.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811935|gb|EEV40755.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 74

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R++R++  LTQ +I      +QS  S  E G+  I I  +I LA+  +T +  L+
Sbjct: 2  FQRIRDLREDNDLTQHQIATLLNISQSTYSRYENGELEIPIQTLIKLANYYNTSIDYLV 60


>gi|305681555|ref|ZP_07404361.1| repressor protein CI family protein [Corynebacterium matruchotii
          ATCC 14266]
 gi|305658715|gb|EFM48216.1| repressor protein CI family protein [Corynebacterium matruchotii
          ATCC 14266]
          Length = 95

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R+ A + Q ++ ++TG +++ I+ +ETG++      + I+A     
Sbjct: 19 RVKLAREYAGMQQHDLADKTGLSRTSIANMETGRTKPRKKTITIIASATGV 69


>gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 191

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R+    +  E+  R G +++ I ++E G+S+     +  L+      +  L+
Sbjct: 15 RIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLI 71


>gi|210617044|ref|ZP_03291379.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787]
 gi|210149567|gb|EEA80576.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787]
          Length = 333

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI       +RK+   +Q+E+  +   ++  +S+ E+  S  ++  +++L+         
Sbjct: 1  MILAEKIMELRKKNGWSQEELAEKIHVSRQSVSKWESSASIPDLSKILLLSQVFGVSTDY 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLR 63


>gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK36]
 gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus
          sanguinis SK36]
          Length = 205

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|111221926|ref|YP_712720.1| hypothetical protein FRAAL2501 [Frankia alni ACN14a]
 gi|111149458|emb|CAJ61148.1| Putative multi-domain regulatory protein [Frankia alni ACN14a]
 gi|116633610|emb|CAH69512.1| putative AfsR-like regulatory protein [Frankia alni]
          Length = 734

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 11 LSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMI 67
          ++D     R    F    R +R+   LTQ+E+    G +   +S LE G+ T      + 
Sbjct: 1  MNDPSGPARKARSFAAVLRELREARSLTQQELAAAAGLSVDAVSALERGRRTQPQPHTVR 60

Query: 68 ILAHTLD 74
           LA  L 
Sbjct: 61 SLASALQ 67


>gi|222055067|ref|YP_002537429.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221564356|gb|ACM20328.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 115

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R+ A ++Q+++    G ++  I + E GK  +N D +  +A  L   + +  
Sbjct: 16 QLRERAGISQEKLAEHVGVSKGQIQKYEYGKDKMNTDKLQRVADALSVSVQEFF 69


>gi|121595255|ref|YP_987151.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42]
 gi|120607335|gb|ABM43075.1| helix-turn-helix domain protein [Acidovorax sp. JS42]
          Length = 97

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + IRK   L+Q+   + +  +++++S LE    +  ++ +  L   ++   
Sbjct: 3  AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding
          HTHdomain [Oceanicaulis alexandrii HTCC2633]
 gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding
          HTHdomain [Oceanicaulis alexandrii HTCC2633]
          Length = 75

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R  A  +TQ E+  R G  +  +  +E GK + +++    +A    TPL  + +
Sbjct: 9  NRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKYSPSLEVAFQIAEVFKTPLTDVFE 68


>gi|330981004|gb|EGH79107.1| hypothetical protein PSYAP_20928 [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 104

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +R+   L+Q+ +       +S+  ++E G+  I ID +I LA  L+     L+
Sbjct: 14 LRRRKGLSQENL---ISIDRSYWGQIERGEVNITIDVLIRLATLLEVEPASLI 63


>gi|326797649|ref|YP_004315468.1| helix-turn-helix domain protein [Sphingobacterium sp. 21]
 gi|326548413|gb|ADZ76798.1| helix-turn-helix domain protein [Sphingobacterium sp. 21]
          Length = 193

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           N  +  RK   +T +E+ +R   ++  IS++E  +   ++  +I +  +LD  L
Sbjct: 10 GNQIKERRKNKGITVQELADRASVSKGLISQIENNRVIPSLMVLIEIIKSLDVDL 64


>gi|229082949|ref|ZP_04215370.1| transcriptional regulator [Bacillus cereus Rock4-2]
 gi|228700349|gb|EEL52914.1| transcriptional regulator [Bacillus cereus Rock4-2]
          Length = 186

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 31/60 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +RK   ++Q+++  +   ++  IS  E  ++  +I N+++++   +  L  L+K
Sbjct: 4  GRQIQYLRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDDLVK 63


>gi|225571494|ref|ZP_03780490.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM
          15053]
 gi|225159571|gb|EEG72190.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM
          15053]
          Length = 73

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 21/58 (36%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R    ++Q+++       +  I  +E GK   ++   + +   L   L  L 
Sbjct: 4  KKMKLARINMDMSQEDLARHVDVTRQTIGMIEAGKFNPSLRLCLAICRALGVTLNDLF 61


>gi|295838540|ref|ZP_06825473.1| regulatory protein [Streptomyces sp. SPB74]
 gi|197697836|gb|EDY44769.1| regulatory protein [Streptomyces sp. SPB74]
          Length = 279

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            + + + R       R+ R+ A  TQ  +  R   +Q+ +S +E+GK T ++ ++ ++ 
Sbjct: 4  DPETLGQSRNDLAEMLRDQRRRAGKTQTWLARRCAMSQTKVSNIESGKLTPSLLDVEMML 63

Query: 71 HTLDT 75
            L  
Sbjct: 64 EALGV 68


>gi|134097736|ref|YP_001103397.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006304|ref|ZP_06564277.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133910359|emb|CAM00472.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 399

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R  R+   L+QKE+ +  G ++SW+S++E G    ++D + +L      
Sbjct: 8  GERIRIYRQRRGLSQKELAHLVGRSESWLSQVERGIR--SVDRLSVLVDVARV 58


>gi|78186700|ref|YP_374743.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273]
 gi|78166602|gb|ABB23700.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273]
          Length = 107

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK + +TQ  + ++ G  +S IS LE  GK T +I  +   A  +   L   L+
Sbjct: 41  RELLAARKRSGMTQDAVASKIGTTKSAISRLEACGKHTPSITTLRKYAEAVGCDLIIKLE 100

Query: 83  P 83
           P
Sbjct: 101 P 101


>gi|56695987|ref|YP_166341.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
 gi|56677724|gb|AAV94390.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R IR    LTQK+   + G +  +++++E     ++   ++ LA      
Sbjct: 3  TQKLYAGAKLREIRNRLSLTQKDFAAKLGVSLPYLNQMENNNRPVSTSVVLALAQEFGLD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|146278343|ref|YP_001168502.1| hypothetical protein Rsph17025_2308 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145556584|gb|ABP71197.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 461

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R +  LTQK    R G +  +++++E     ++   ++ LA      +
Sbjct: 3  QKLYAGAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDV 62

Query: 78 WKL 80
           KL
Sbjct: 63 TKL 65


>gi|312905525|ref|ZP_07764639.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|310631254|gb|EFQ14537.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
          Length = 418

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 29/63 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             +       R  R+E   TQ+ +  + G ++S +S++E G   ++ + + ++  +L  
Sbjct: 3  QVNQHDLGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQE 62

Query: 76 PLW 78
           + 
Sbjct: 63 EIV 65


>gi|269123234|ref|YP_003305811.1| transcriptional regulator, XRE family [Streptobacillus
          moniliformis DSM 12112]
 gi|268314560|gb|ACZ00934.1| transcriptional regulator, XRE family [Streptobacillus
          moniliformis DSM 12112]
          Length = 77

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK   +TQ+++       + +IS +E G  T ++     +A +LDT ++ + 
Sbjct: 3  NRIKEVRKVKNITQQKLVENISITRQYISLIELGNETPSLKVANEIAMSLDTCIYSIF 60


>gi|302530338|ref|ZP_07282680.1| transcriptional regulator [Streptomyces sp. AA4]
 gi|302439233|gb|EFL11049.1| transcriptional regulator [Streptomyces sp. AA4]
          Length = 183

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R++   T  E+   TG + S +S LE+G+    ++ ++ ++     PL +L+
Sbjct: 12 VGPRLRHFRRQRNCTLDELSTATGISISTLSRLESGQRKATLELLLPISRAHRVPLDELV 71


>gi|239628526|ref|ZP_04671557.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518672|gb|EEQ58538.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 114

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +  + ++ Q ++   TG   S +SE  +G+ +  I N I++A   D  L  L+
Sbjct: 8  FNENLRLLLIQKEMKQADLCRMTGIQTSLMSEYISGRKSPTIRNAILIADAFDISLDTLV 67


>gi|237801497|ref|ZP_04589958.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331024356|gb|EGI04413.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 154

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R       R IR  A L +++       ++ +++ +E G+ +I+I+ +  +   L    
Sbjct: 4  REALGQVLREIRVAAGLRREDCS--AALSREYLAGVERGQRSISIEKLHSICDCLGITP 60


>gi|284992987|ref|YP_003411541.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM
           43160]
 gi|284066232|gb|ADB77170.1| transcriptional regulator, XRE family [Geodermatophilus obscurus
           DSM 43160]
          Length = 170

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                R  R  A+++ +E+    G +  ++S++E G    + + +  +A  L      L
Sbjct: 44  VGEFIREQRSAARVSLRELARTAGVSNPYLSQVERGLRKPSAEILAAIAKGLKISAETL 102


>gi|226949745|ref|YP_002804836.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226841807|gb|ACO84473.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 124

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          I   N + IR E  L+  ++        + ISE+E+GK  ++N   +  +A+ L+    K
Sbjct: 4  ILGENIKKIRTEKGLSAYKLSKLAKVGTTTISEIESGKRQSLNSTTIEKIANALNISTDK 63

Query: 80 LL 81
          L+
Sbjct: 64 LM 65


>gi|226306228|ref|YP_002766188.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4]
 gi|229490856|ref|ZP_04384691.1| putative transcriptional regulatory protein [Rhodococcus
          erythropolis SK121]
 gi|226185345|dbj|BAH33449.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis
          PR4]
 gi|229322246|gb|EEN88032.1| putative transcriptional regulatory protein [Rhodococcus
          erythropolis SK121]
          Length = 126

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    ++ R  R     T +E+ N    +  ++SE+E G+   + + +  +   L  PL 
Sbjct: 6  REAIGDSLRRTRVSQSRTLREVSNSARVSLGYLSEVERGRKEASSELLAAICDALAVPLS 65

Query: 79 KLL 81
           +L
Sbjct: 66 DVL 68


>gi|255505268|ref|ZP_05345130.3| conserved domain protein [Bryantella formatexigens DSM 14469]
 gi|255269040|gb|EET62245.1| conserved domain protein [Bryantella formatexigens DSM 14469]
          Length = 86

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++R  F +     R   ++TQ+E+ +  G ++  I +LE  +   ++     +A   D  
Sbjct: 15 KDRYKFESKIHIYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLAYSIAKVFDVT 74

Query: 77 LWKLL 81
          +  L 
Sbjct: 75 IEDLF 79


>gi|169827791|ref|YP_001697949.1| DNA-binding protein [Lysinibacillus sphaericus C3-41]
 gi|168992279|gb|ACA39819.1| DNA-binding protein [Lysinibacillus sphaericus C3-41]
          Length = 417

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE KLT + +       +  +S++E  K+  +++++  +A  L     +LL
Sbjct: 4  LGARIRKLRKEKKLTLEALAGD-RLTKGMLSQIENEKAKPSMESLDYIAERLGVKASELL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|154497138|ref|ZP_02035834.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC
          29799]
 gi|150273537|gb|EDN00665.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC
          29799]
          Length = 417

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M         RKE  L+Q+ + ++ G ++  I + E+  S   ++ ++ L+     P+  
Sbjct: 1  MTVGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGW 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|126650699|ref|ZP_01722915.1| DNA-binding protein [Bacillus sp. B14905]
 gi|126592364|gb|EAZ86382.1| DNA-binding protein [Bacillus sp. B14905]
          Length = 416

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RKE KLT + +       +  +S++E  K+  +++++  +A  L     +LL
Sbjct: 4  LGARIRKLRKEKKLTLEALAGD-RLTKGMLSQIENEKAKPSMESLDYIAERLGVKASELL 62

Query: 82 K 82
          +
Sbjct: 63 E 63


>gi|111225688|ref|YP_716482.1| putative regulatory protein [Frankia alni ACN14a]
 gi|111153220|emb|CAJ64970.1| Putative protein; Putative regulatory protein [Frankia alni
          ACN14a]
          Length = 277

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
            +  + +R       R +R+   LT  +    TG +Q  IS+LE G+   +  ++ IL 
Sbjct: 2  DPERYVADRETLAARLRELRRATGLTGVQAAASTGMSQPKISKLENGRLLPSEHDVEILL 61

Query: 71 HTL 73
             
Sbjct: 62 DLY 64


>gi|110803374|ref|YP_699815.1| LacI family transcription regulator [Clostridium perfringens
          SM101]
 gi|110683875|gb|ABG87245.1| DNA-binding protein [Clostridium perfringens SM101]
          Length = 223

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|94264958|ref|ZP_01288729.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|94265765|ref|ZP_01289500.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93453700|gb|EAT04081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93454561|gb|EAT04839.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 101

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             +  RK   LTQ  +  + G  QS IS++E GK  + + + + +A  LD    
Sbjct: 7  KKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLDLEPV 61


>gi|49187883|ref|YP_031136.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|167634898|ref|ZP_02393216.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167639942|ref|ZP_02398210.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170685616|ref|ZP_02876839.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170707037|ref|ZP_02897494.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177652240|ref|ZP_02934743.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190567224|ref|ZP_03020139.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|196033157|ref|ZP_03100570.1| DNA-binding protein [Bacillus cereus W]
 gi|218906227|ref|YP_002454061.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227817802|ref|YP_002817811.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229603307|ref|YP_002869269.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254687363|ref|ZP_05151220.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254725376|ref|ZP_05187159.1| DNA-binding protein [Bacillus anthracis str. A1055]
 gi|254733728|ref|ZP_05191444.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254740566|ref|ZP_05198257.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254753172|ref|ZP_05205208.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254761515|ref|ZP_05213536.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|49181810|gb|AAT57186.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|167512023|gb|EDR87401.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167529648|gb|EDR92397.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170128140|gb|EDS97010.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170670080|gb|EDT20820.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172082246|gb|EDT67312.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190561728|gb|EDV15698.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|195994586|gb|EDX58541.1| DNA-binding protein [Bacillus cereus W]
 gi|218539421|gb|ACK91819.1| DNA-binding protein [Bacillus cereus AH820]
 gi|227005411|gb|ACP15154.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229267715|gb|ACQ49352.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 73

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R + +L+Q ++    G ++  IS +E G    +I   + +AH  + P+ ++  
Sbjct: 5  NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIFT 63


>gi|56418607|ref|YP_145925.1| hypothetical protein GK0072 [Geobacillus kaustophilus HTA426]
 gi|261417572|ref|YP_003251254.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61]
 gi|297528447|ref|YP_003669722.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3]
 gi|319765229|ref|YP_004130730.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
 gi|56378449|dbj|BAD74357.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|261374029|gb|ACX76772.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61]
 gi|297251699|gb|ADI25145.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3]
 gi|317110095|gb|ADU92587.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52]
          Length = 73

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+ +    G + S + E+E G    +   +  +A  L+  +
Sbjct: 2  EAERWGRRIRAFRKLKGYTQERLAKELGISVSILGEIERGNRMPSDSLVGQIAERLNISV 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 EELAPP 67


>gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 94

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR++   +Q +I    G  +  IS  E  K+ ++  ++I LA      L +L
Sbjct: 1  MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60


>gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK408]
          Length = 94

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR++   +Q +I    G  +  IS  E  K+ ++  ++I LA      L +L
Sbjct: 1  MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60


>gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus
          MRP]
 gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus
          MRP]
          Length = 67

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R E  LTQ E+ +R   ++  ++ LETGK   ++     LA      +  + +
Sbjct: 3  NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYDPSLPLAFRLARLFGLRIEDIFQ 61


>gi|325279953|ref|YP_004252495.1| helix-turn-helix domain-containing protein [Odoribacter
          splanchnicus DSM 20712]
 gi|324311762|gb|ADY32315.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM
          20712]
          Length = 74

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +RK   LT +E+        S +S+ E+G   I + ++  L+  L   L KL 
Sbjct: 11 FGQKLQQLRKNQSLTLQELEAIVDIDNSNLSKYESGSIDIRLTSLYKLSKALGITLSKLF 70

Query: 82 K 82
          +
Sbjct: 71 E 71


>gi|323126423|gb|ADX23720.1| DNA-binding protein [Streptococcus dysgalactiae subsp.
          equisimilis ATCC 12394]
          Length = 110

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IR +  +TQ+++  +     ++  +LE   + I I+ +  + + LD  +    
Sbjct: 11 AKRIRKIRLQRGMTQEQLEEKADLGVNYAYKLENLATNIKINTLEKVLNALDITITDFF 69


>gi|319939730|ref|ZP_08014087.1| XRE family Transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
 gi|319811068|gb|EFW07379.1| XRE family Transcriptional regulator [Streptococcus anginosus
          1_2_62CV]
          Length = 61

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ ++ RK   L+Q ++  + G ++  I+ +E  K    ++  I LA  L T L  L 
Sbjct: 2  NHVKDFRKNLGLSQLDLAKQIGVSRQTINMIENNKYNPTLELCINLALALKTDLNTLF 59


>gi|307293728|ref|ZP_07573572.1| transcriptional regulator, XRE family [Sphingobium
          chlorophenolicum L-1]
 gi|306879879|gb|EFN11096.1| transcriptional regulator, XRE family [Sphingobium
          chlorophenolicum L-1]
          Length = 467

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R ++     R +R+E  L Q  +    G + S+++ LE  +  +    ++ LA+  D  
Sbjct: 4  DRKLYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDID 63

Query: 77 LWKLL 81
          +   +
Sbjct: 64 IRDFV 68


>gi|291535748|emb|CBL08860.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Roseburia intestinalis M50/1]
 gi|291538243|emb|CBL11354.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Roseburia intestinalis XB6B4]
          Length = 334

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI        RK+   +Q+E+  +   ++  +S+ E+ +S  ++  +I L+         
Sbjct: 1  MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEIFGVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|260427243|ref|ZP_05781222.1| helix-turn-helix domain protein [Citreicella sp. SE45]
 gi|260421735|gb|EEX14986.1| helix-turn-helix domain protein [Citreicella sp. SE45]
          Length = 228

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          + + R+        + IRK   LTQ+ + + +G     I ++E+G+    +  +  LA  
Sbjct: 2  ETMERDAQYIATQCKYIRKMFSLTQENLADASGLTVRTIQKVESGRHVPEVQTLRSLARG 61

Query: 73 LDTPLWKLLKP 83
          L   +    KP
Sbjct: 62 LGFDITVFSKP 72


>gi|253580532|ref|ZP_04857797.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848262|gb|EES76227.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 105

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   + +  +N+R++  LTQ ++ +  G    +IS +E  ++ +++  +   A      L
Sbjct: 2  ETENYGSLIKNLRQKMGLTQNQVADSLGVTPGYISNVENNRTAMSLRILTYYARLTGCSL 61

Query: 78 WKLL 81
            L+
Sbjct: 62 DSLV 65


>gi|258406639|ref|YP_003199380.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
          DSM 5692]
 gi|257798866|gb|ACV69802.1| transcriptional regulator, XRE family [Desulfohalobium retbaense
          DSM 5692]
          Length = 468

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I  N  R  R E  L+Q  +   TG +Q  +S  E  KST+  D +  LA TL 
Sbjct: 3  IAGNQLRETRLELGLSQARLAELTGISQHLLSAYELEKSTLAPDLIQKLASTLQ 56


>gi|209551516|ref|YP_002283433.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209537272|gb|ACI57207.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 125

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
          F    R +R    ++QKE+      + +++S LE GK      D +  +A   + 
Sbjct: 4  FGEAIRKLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58


>gi|153812486|ref|ZP_01965154.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174]
 gi|149831411|gb|EDM86499.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174]
          Length = 70

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  N  + +R++  LTQK++  +   ++  I+ +ETGK   ++     +A   +  + +
Sbjct: 1  MILKNRVKELREKEGLTQKKLGEKVNVSRQAINAIETGKYDPSLWLAYDIAQLFNMSIEE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|94272166|ref|ZP_01292081.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93450214|gb|EAT01505.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 100

 Score = 46.1 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
             +  RK   LTQ  +  + G  QS IS++E GK  + + + + +A  LD    
Sbjct: 6  KKLQAARKAKGLTQGALGAKMGLPQSHISQIEAGKVDMRLSSFLEMARFLDLEPV 60


>gi|332072175|gb|EGI82661.1| transcriptional activator [Streptococcus pneumoniae GA41301]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|293433580|ref|ZP_06662008.1| DNA-binding protein [Escherichia coli B088]
 gi|291324399|gb|EFE63821.1| DNA-binding protein [Escherichia coli B088]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK+ K++  E+  R G ++  + E+E  ++  +I  +  LA  +   +  
Sbjct: 20 EAVSQRIKLYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSITMLCRLAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|260575913|ref|ZP_05843908.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
 gi|259021839|gb|EEW25140.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2]
          Length = 465

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R IR    LTQK   ++ G +  +++++E     ++   ++ LA    T 
Sbjct: 3  TQKLYAGVKLREIRARLGLTQKAFADKLGVSLPYLNQMENNHRPVSASVVLALAQEFGTD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|237737466|ref|ZP_04567947.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
 gi|229421328|gb|EEO36375.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
          Length = 152

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          F    +  R++  L+QK++  + G     I ++E G     I  +  ++  L+
Sbjct: 10 FALLIKKFREDRGLSQKQLAEKAGIGSGTIGDIERGDRKGKISTLDKISKALN 62


>gi|308235749|ref|ZP_07666486.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018]
 gi|311114657|ref|YP_003985878.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946151|gb|ADP38855.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +RK+ K+TQ+E+ N  G  +  I+ +ETGK   ++     +A   D  + ++ 
Sbjct: 7  RLRKQHKITQEELANEVGVTRQTITSIETGKYIASLPLAFKIAKFFDMSIEEIF 60


>gi|149182579|ref|ZP_01861050.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
 gi|148849715|gb|EDL63894.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
          Length = 177

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 28/46 (60%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +RKE K TQ++I ++    +S+ +++E G+   + D    +A+ L+
Sbjct: 10 LRKERKFTQQQIADKAFIDRSYYAQIEKGERKPSDDVAKKIANILE 55


>gi|126180158|ref|YP_001048123.1| XRE family transcriptional regulator [Methanoculleus marisnigri
          JR1]
 gi|125862952|gb|ABN58141.1| transcriptional regulator, XRE family [Methanoculleus marisnigri
          JR1]
          Length = 68

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R +R +A +TQ+E+  + G  +  I  LE GK   ++     +AHTL + + ++  
Sbjct: 4  RIRELRAKAGITQEELAQQVGVRRETIVFLEKGKYNPSLKLAYKVAHTLGSTIEEVFT 61


>gi|126179762|ref|YP_001047727.1| XRE family transcriptional regulator [Methanoculleus marisnigri
          JR1]
 gi|125862556|gb|ABN57745.1| transcriptional regulator, XRE family [Methanoculleus marisnigri
          JR1]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+ + N  G  +  I  +E GK   +++    +A      +  + 
Sbjct: 3  NRIKVYRAMHDLTQEGLANELGVTRQTILAIEKGKYDPSLELAFKIAGFFGVTIEDIF 60


>gi|328882155|emb|CCA55394.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 254

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 7  DEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          D      A    R+ F       ++R +  LTQ  +  R G  Q  IS +E G +   + 
Sbjct: 18 DTDEYEKAHQDARLAFMLGQMVYDLRTKLGLTQTALAERAGMKQPAISRIEGGGTVPTLP 77

Query: 65 NMIILAHTLDTPLWKLLKP 83
           +  LA  LD  L     P
Sbjct: 78 LLRRLADALDADLNISFTP 96


>gi|298248193|ref|ZP_06971998.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
 gi|297550852|gb|EFH84718.1| transcriptional regulator, XRE family [Ktedonobacter racemifer
          DSM 44963]
          Length = 922

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R+E   TQ+ +       +  +   E G    +++    L+  L  PL +L
Sbjct: 11 LKQAREEKGWTQRRLALELDVDEKTVQSWERGTRFPSLEYRKQLSDLLGKPLEQL 65


>gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268]
 gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268]
          Length = 331

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +    +RK+   +Q+++  +   ++  IS+ E  +S  +++ ++ L+         
Sbjct: 1  MILADKIIELRKKNGWSQEDLAEKLDVSRQSISKWEGAQSIPDMNKILKLSEVFSVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|300779089|ref|ZP_07088947.1| cro/CI family transcriptional regulator [Chryseobacterium gleum
          ATCC 35910]
 gi|300504599|gb|EFK35739.1| cro/CI family transcriptional regulator [Chryseobacterium gleum
          ATCC 35910]
          Length = 102

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       +  R   +L+Q ++      ++  +  +E G +   I+N++ L + LD  + 
Sbjct: 10 KFQIGKLIQVYRLRKELSQFQLGLELNISKDHVGRIERGLTNPTIENIVKLCNFLDINIL 69

Query: 79 KLLK 82
           L  
Sbjct: 70 FLFT 73


>gi|220912228|ref|YP_002487537.1| XRE family transcriptional regulator [Arthrobacter
          chlorophenolicus A6]
 gi|325962842|ref|YP_004240748.1| hypothetical protein Asphe3_14400 [Arthrobacter
          phenanthrenivorans Sphe3]
 gi|219859106|gb|ACL39448.1| transcriptional regulator, XRE family [Arthrobacter
          chlorophenolicus A6]
 gi|323468929|gb|ADX72614.1| Helix-turn-helix protein [Arthrobacter phenanthrenivorans Sphe3]
          Length = 119

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R++R+    T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 5  RHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 SMLR 68


>gi|167764135|ref|ZP_02436262.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC
          43183]
 gi|167698251|gb|EDS14830.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC
          43183]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + I     + +R E  LTQ+++  +   + S   ++E G++ + +  +  +A  L     
Sbjct: 6  KKIAGQQLQLLRLEKNLTQEQMSEKLNLSTSAYCKIEYGETDLTLTRLDKIAKVLGISAL 65

Query: 79 KLL 81
           L 
Sbjct: 66 SLF 68


>gi|160891591|ref|ZP_02072594.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC
          8492]
 gi|270295331|ref|ZP_06201532.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478327|ref|ZP_07937491.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
 gi|156858998|gb|EDO52429.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC
          8492]
 gi|270274578|gb|EFA20439.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905486|gb|EFV27276.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          4_1_36]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|108743321|dbj|BAE95424.1| putative DNA-binding protein [Streptomyces kanamyceticus]
          Length = 280

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+  +++Q E+  R   +   IS +ETG+S  + + ++ LA  LD P+  
Sbjct: 26 LRAWRERRRVSQLELALRADSSARHISFVETGRSRPSEEFLLRLADHLDVPMRD 79


>gi|27380892|ref|NP_772421.1| hypothetical protein bll5781 [Bradyrhizobium japonicum USDA 110]
 gi|27354058|dbj|BAC51046.1| bll5781 [Bradyrhizobium japonicum USDA 110]
          Length = 273

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 31/57 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           ++ R  R+  +++Q ++      +   +S +ETG++  + D ++ LA  LD PL +
Sbjct: 19 GDHLREWRQRRRMSQLDLAGEAEISARHLSFVETGRAAPSRDMVLRLAERLDVPLRE 75


>gi|83956064|ref|ZP_00964546.1| transcriptional regulator, XRE family protein [Sulfitobacter sp.
          NAS-14.1]
 gi|83839630|gb|EAP78809.1| transcriptional regulator, XRE family protein [Sulfitobacter sp.
          NAS-14.1]
          Length = 110

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +RKR    ++   L    IF    R  R E  +T +++ +R   +++ +  +E G     
Sbjct: 2  KRKRSYSRVTKQALS---IFGKLIRVARTERGMTAQDLADRANISRTTLYNIEKGAPGPE 58

Query: 63 IDNMIILAHTLDTPLWK 79
          I  +  +A  +   L+ 
Sbjct: 59 IGTVFEVAALVGVRLFD 75


>gi|332686463|ref|YP_004456237.1| Cro/CI family transcriptional regulator [Melissococcus plutonius
          ATCC 35311]
 gi|332370472|dbj|BAK21428.1| transcriptional regulator, Cro/CI family [Melissococcus plutonius
          ATCC 35311]
          Length = 279

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  + IRK+  LTQK +      +Q  +S +E G+   NI  M  L   L   + +++
Sbjct: 4  FGSIIKKIRKQQHLTQKMLSEDI-CSQGVLSRIENGEELPNIMVMQRLCQRLGVTMDQIM 62


>gi|322833805|ref|YP_004213832.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
 gi|321169006|gb|ADW74705.1| helix-turn-helix domain protein [Rahnella sp. Y9602]
          Length = 87

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
            ++ R +A+LTQ+++    G     A+S +S+ E G  + N D M   A  L+ P
Sbjct: 5  RLKSARTKARLTQEKLGVLAGIDESTARSRVSQYENGTYSPNFDTMCHFARVLNVP 60


>gi|321312988|ref|YP_004205275.1| transcriptional regulator [Bacillus subtilis BSn5]
 gi|320019262|gb|ADV94248.1| transcriptional regulator [Bacillus subtilis BSn5]
          Length = 152

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +     R  RK    +  ++   +G ++S++S++E G     ++  +  ++ TL+  L +
Sbjct: 1  MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|296110846|ref|YP_003621227.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154]
 gi|295832377|gb|ADG40258.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F +    +R++  L+Q+ +  +   ++  +S+ E G +  +I  +I LA  L   L 
Sbjct: 2  KNVFKSQLSLLRQKKNLSQEALAQKLYVSRQSVSKWEHGDAEPDIAKLISLAEILAVDLN 61

Query: 79 KLL 81
           LL
Sbjct: 62 FLL 64


>gi|238925758|ref|YP_002939275.1| hypothetical protein EUBREC_3415 [Eubacterium rectale ATCC 33656]
 gi|238877434|gb|ACR77141.1| Hypothetical protein EUBREC_3415 [Eubacterium rectale ATCC 33656]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   +  +  
Sbjct: 32 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISMYFNMLVED 91

Query: 80 LL 81
          + 
Sbjct: 92 VF 93


>gi|319425143|gb|ADV53217.1| helix-turn-helix domain protein [Shewanella putrefaciens 200]
          Length = 153

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          I     + IR++ KLTQ E+    G + +   ++E G++T++IDN+      
Sbjct: 8  ILALTIKQIREDRKLTQSEVAELMGMSGAGWGKIENGQATLSIDNIDKFCKL 59


>gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis
          H37Rv]
 gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97]
 gi|121637061|ref|YP_977284.1| putative transcriptional regulator protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|148660915|ref|YP_001282438.1| putative transcriptional regulator protein [Mycobacterium
          tuberculosis H37Ra]
 gi|148822343|ref|YP_001287097.1| transcriptional regulator [Mycobacterium tuberculosis F11]
 gi|167969266|ref|ZP_02551543.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis H37Ra]
 gi|215402959|ref|ZP_03415140.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|215410750|ref|ZP_03419558.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A]
 gi|215426424|ref|ZP_03424343.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|215445295|ref|ZP_03432047.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|218752816|ref|ZP_03531612.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503]
 gi|219557015|ref|ZP_03536091.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|224989534|ref|YP_002644221.1| putative transcriptional regulator protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253799830|ref|YP_003032831.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|254231403|ref|ZP_04924730.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C]
 gi|254364034|ref|ZP_04980080.1| hypothetical transcriptional regulator protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|254550127|ref|ZP_05140574.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
          INH-RIF-EM']
 gi|260186058|ref|ZP_05763532.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|260200171|ref|ZP_05767662.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|260204374|ref|ZP_05771865.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289442559|ref|ZP_06432303.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289446719|ref|ZP_06436463.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289555084|ref|ZP_06444294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289569125|ref|ZP_06449352.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289573782|ref|ZP_06454009.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289744873|ref|ZP_06504251.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289749665|ref|ZP_06509043.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289757219|ref|ZP_06516597.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|289761269|ref|ZP_06520647.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|294993308|ref|ZP_06798999.1| transcriptional regulator [Mycobacterium tuberculosis 210]
 gi|297633669|ref|ZP_06951449.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
 gi|297730656|ref|ZP_06959774.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506]
 gi|298524627|ref|ZP_07012036.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306775285|ref|ZP_07413622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|306781801|ref|ZP_07420138.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|306788203|ref|ZP_07426525.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|306792532|ref|ZP_07430834.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|306967199|ref|ZP_07479860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|307079114|ref|ZP_07488284.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|307083678|ref|ZP_07492791.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|313657986|ref|ZP_07814866.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475]
 gi|2117223|emb|CAB09040.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium
          tuberculosis H37Rv]
 gi|13880746|gb|AAK45418.1| DNA-binding protein, putative [Mycobacterium tuberculosis
          CDC1551]
 gi|31617911|emb|CAD94021.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium bovis
          AF2122/97]
 gi|121492708|emb|CAL71177.1| Probable transcriptional regulator protein [Mycobacterium bovis
          BCG str. Pasteur 1173P2]
 gi|124600462|gb|EAY59472.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C]
 gi|134149548|gb|EBA41593.1| hypothetical transcriptional regulator protein [Mycobacterium
          tuberculosis str. Haarlem]
 gi|148505067|gb|ABQ72876.1| putative transcriptional regulator protein [Mycobacterium
          tuberculosis H37Ra]
 gi|148720870|gb|ABR05495.1| hypothetical transcriptional regulatory protein [Mycobacterium
          tuberculosis F11]
 gi|224772647|dbj|BAH25453.1| putative transcriptional regulator protein [Mycobacterium bovis
          BCG str. Tokyo 172]
 gi|253321333|gb|ACT25936.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435]
 gi|289415478|gb|EFD12718.1| transcriptional regulator [Mycobacterium tuberculosis T46]
 gi|289419677|gb|EFD16878.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A]
 gi|289439716|gb|EFD22209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605]
 gi|289538213|gb|EFD42791.1| transcriptional regulator [Mycobacterium tuberculosis K85]
 gi|289542879|gb|EFD46527.1| transcriptional regulator [Mycobacterium tuberculosis T17]
 gi|289685401|gb|EFD52889.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987]
 gi|289690252|gb|EFD57681.1| transcriptional regulator [Mycobacterium tuberculosis T92]
 gi|289708775|gb|EFD72791.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM
          1503]
 gi|289712783|gb|EFD76795.1| transcriptional regulator [Mycobacterium tuberculosis T85]
 gi|298494421|gb|EFI29715.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308216217|gb|EFO75616.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001]
 gi|308325442|gb|EFP14293.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002]
 gi|308335215|gb|EFP24066.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308339022|gb|EFP27873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005]
 gi|308355148|gb|EFP43999.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009]
 gi|308363022|gb|EFP51873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011]
 gi|308366671|gb|EFP55522.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012]
 gi|323720411|gb|EGB29505.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A]
 gi|326904644|gb|EGE51577.1| transcriptional regulator [Mycobacterium tuberculosis W-148]
 gi|328459575|gb|AEB04998.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
             L  A    R       R +R+E  LTQ  +      + S++++LE  +  I +  ++
Sbjct: 4  SNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLL 63

Query: 68 ILAHTLDTP 76
          +L    D  
Sbjct: 64 LLTERFDLS 72


>gi|148243867|ref|YP_001220106.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146400430|gb|ABQ28964.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5]
          Length = 133

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R +R    + Q ++    G  Q+ ISELE G+  I++D  + L   L   + +
Sbjct: 14 FGQLIRKVRISFGVRQADLAAMVGTRQATISELERGRLNIHLDLALNLMRHLGIEIRE 71


>gi|152966546|ref|YP_001362330.1| XRE family transcriptional regulator [Kineococcus radiotolerans
          SRS30216]
 gi|151361063|gb|ABS04066.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
          SRS30216]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R+    T  ++   TG + S +S LE+G+    ++ +++LA     PL +L+
Sbjct: 23 VGSRLRALRRNRGATLNDLSTNTGISISTLSRLESGRRRPTLELLLLLARAHHVPLDELV 82


>gi|319782361|ref|YP_004141837.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168249|gb|ADV11787.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri
          biovar biserrulae WSM1271]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R   +  +  +  R   +LT +++ +  G   S++S+LE G S  N   ++++A+ L   
Sbjct: 20 RRSTVLGDRIKAYRTTRRLTLRQLGDMIGTTASFLSQLERGLSGANTSTLMLIANALGIS 79

Query: 77 LWKLL 81
          L  L 
Sbjct: 80 LADLF 84


>gi|313886866|ref|ZP_07820570.1| DNA-binding helix-turn-helix protein [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|332299951|ref|YP_004441872.1| transcriptional regulator, XRE family [Porphyromonas
          asaccharolytica DSM 20707]
 gi|312923663|gb|EFR34468.1| DNA-binding helix-turn-helix protein [Porphyromonas
          asaccharolytica PR426713P-I]
 gi|332177014|gb|AEE12704.1| transcriptional regulator, XRE family [Porphyromonas
          asaccharolytica DSM 20707]
          Length = 474

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + IR + +L   E++ RTG   + I+++ETG      D +  L+        +LL+P
Sbjct: 26 LKEIRADRRLQLLEVQRRTGIESTLINKIETGIKMPTSDQVSKLSKAYGLDPEELLEP 83


>gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 371

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N   +R++A +TQ ++ N  G ++S +S+ ET  S  +I  +  LA   +  + +L+
Sbjct: 6  LGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTSYPDIIFLPQLATLFNVTVDELM 65


>gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 120

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R EA LTQ +I      +Q   ++ E G+   + + +   A   +     L
Sbjct: 1  MFPERLKALRLEANLTQNDIAKSLNISQPSYAQWENGRRKPSSETLEKFAQFYNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|257090410|ref|ZP_05584771.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|256999222|gb|EEU85742.1| cro/CI family transcriptional regulator [Enterococcus faecalis
          CH188]
 gi|315034707|gb|EFT46639.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0027]
 gi|315578682|gb|EFU90873.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0630]
          Length = 125

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +R     TQ+++ +  G  ++  S  E  ++  + + ++ LA   D     L
Sbjct: 1  MLGNKLKQLRISKNKTQQQVADYLGITRAAYSHFENNRNDPDKETLVKLAILFDVTTDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225378702|ref|ZP_03755923.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans
          DSM 16841]
 gi|225209539|gb|EEG91893.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans
          DSM 16841]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK  KL+Q E+ +  G  +  I+ +E GK T ++     +AH  +  + ++ 
Sbjct: 3  NRIKELRKANKLSQGELADIVGTTRQTITSIEVGKYTASLGLAYKIAHYFNLTIEEVF 60


>gi|194302996|ref|YP_002014265.1| gp49 [Mycobacterium phage Boomer]
 gi|194153044|gb|ACF34111.1| gp49 [Mycobacterium phage Boomer]
          Length = 77

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R IR+    +  E+   +G +  ++S+LE G    N      LA  L  P+  L +P
Sbjct: 10 QELRVIRERTGWSSAELSRESGISAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 69


>gi|194291881|ref|YP_002007788.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193225785|emb|CAQ71731.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG
          19424]
          Length = 297

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R +   +Q  +    G +Q  IS LE+G++  + + ++ LA  L  PL +
Sbjct: 18 LRYWRGKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQ 71


>gi|168205827|ref|ZP_02631832.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|168213491|ref|ZP_02639116.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
 gi|169343302|ref|ZP_02864312.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|169298600|gb|EDS80681.1| DNA-binding protein [Clostridium perfringens C str. JGS1495]
 gi|170662662|gb|EDT15345.1| DNA-binding protein [Clostridium perfringens E str. JGS1987]
 gi|170715060|gb|EDT27242.1| DNA-binding protein [Clostridium perfringens CPE str. F4969]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|149921371|ref|ZP_01909825.1| transcriptional regulator, XRE family protein [Plesiocystis
          pacifica SIR-1]
 gi|149817804|gb|EDM77268.1| transcriptional regulator, XRE family protein [Plesiocystis
          pacifica SIR-1]
          Length = 266

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R  RK   L+Q ++         +IS +ETG+S    + ++ L   L   L  
Sbjct: 9  FGERLRAWRKRRGLSQMDLAIEADSTPRYISFIETGRSRPGRELVLRLVEALQLSLRD 66


>gi|116695851|ref|YP_841427.1| anaerobic benzoate catabolism transcriptional regulator
          [Ralstonia eutropha H16]
 gi|113530350|emb|CAJ96697.1| Transcriptional Regulator [Ralstonia eutropha H16]
          Length = 320

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%)

Query: 7  DEPHLSDAIL---RERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          D  H SDA      ++  F        R +R    LT+K      G ++  ++ LE G  
Sbjct: 16 DLHHDSDARAANGTDKNPFLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSG 75

Query: 60 TINIDNMIILAHTLDTPLWKLL 81
            +I  +  +A  L   L  LL
Sbjct: 76 NASILVLQHIADALQCSLAGLL 97


>gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L]
 gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional
          regulator [Bacillus cereus E33L]
          Length = 145

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 4  MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|328554901|gb|AEB25393.1| hypothetical protein BAMTA208_16205 [Bacillus amyloliquefaciens
          TA208]
          Length = 77

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           NF+ IR    +TQ +     G + +++S +E G   ++     +LA   + 
Sbjct: 6  ENFKLIRLFKGMTQAQFAKYLGISPTYVSMIENGTRAVSTKAERVLAMDFEV 57


>gi|330816215|ref|YP_004359920.1| transcriptional regulator, XRE family [Burkholderia gladioli
          BSR3]
 gi|327368608|gb|AEA59964.1| transcriptional regulator, XRE family [Burkholderia gladioli
          BSR3]
          Length = 282

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R     +Q  +    G +Q  IS +E+G+S    D ++ LA  L+ PL +
Sbjct: 15 LGELLRYWRGVRGASQLGLSLEAGISQRQISFIESGRSVPGRDTLLTLAQALEVPLRE 72


>gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
 gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK355]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ +  + G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|320534010|ref|ZP_08034566.1| toxin-antitoxin system, antitoxin component, Xre family
          [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133778|gb|EFW26170.1| toxin-antitoxin system, antitoxin component, Xre family
          [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 101

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+         R  A LTQ E+  R G  QS IS +E G    ++  +  +A  LD  L
Sbjct: 35 RLQLAELVYAARTRAGLTQTELAGRMGTQQSVISAVENGGQVPSVSTLWRIARALDLRL 93


>gi|296876453|ref|ZP_06900504.1| possible transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
 gi|296432446|gb|EFH18242.1| possible transcriptional regulator [Streptococcus parasanguinis
          ATCC 15912]
          Length = 108

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R +R ++ +TQ+++  +     ++  +LE  +  I I  +  +   L+  L
Sbjct: 10 KRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIDALNVDL 63


>gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
          Length = 190

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + +RKE  +TQ+E       +   +S  ETG +  +I  ++ +A   +  + +++
Sbjct: 7  GSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVNMPDISLLVDIAEFFNVSIPEII 65


>gi|239995180|ref|ZP_04715704.1| transcriptional regulator, HTH_3 family protein [Alteromonas
          macleodii ATCC 27126]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
              +      R I  ++ +++RK   L+  +    TG +++ + ++E G+S+  I  + 
Sbjct: 2  TKANAQPSAISRSI-AHHLQSVRKARGLSLDKTAQLTGVSKAMLGQIERGESSPTIATLW 60

Query: 68 ILAHTL 73
           +A  L
Sbjct: 61 KIATGL 66


>gi|238022673|ref|ZP_04603099.1| hypothetical protein GCWU000324_02582 [Kingella oralis ATCC
          51147]
 gi|237865876|gb|EEP67012.1| hypothetical protein GCWU000324_02582 [Kingella oralis ATCC
          51147]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R IR++ ++TQ+E+  +   + S  S++E G++ +  + +  +A+     L  L+
Sbjct: 5  EKIRFIREQQQMTQEEMAEKLNLSTSGYSKIERGETKLQFEKLQQVANIFKIDLTDLI 62


>gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202]
 gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202]
          Length = 127

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +R I     +  RKE  LT   +  + G AQ  +S  E G + IN+ +++ +A  LDT 
Sbjct: 9  VDRFI-GKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTS 67

Query: 77 L 77
          +
Sbjct: 68 I 68


>gi|222087820|ref|YP_002546358.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221725268|gb|ACM28424.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 159

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R +     R +R  + L+Q E+ +  G +   + + E+GK+ I+   + ++A  L+ 
Sbjct: 30 PVDRHV-GQQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVIASRLNV 88

Query: 76 PLWKLL 81
          P+ +  
Sbjct: 89 PVNRFF 94


>gi|209883668|ref|YP_002287525.1| transcriptional regulator of XRE family [Oligotropha
          carboxidovorans OM5]
 gi|209871864|gb|ACI91660.1| transcriptional regulator of XRE family [Oligotropha
          carboxidovorans OM5]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 26/72 (36%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +           +  R  R    L+Q+++ +  G     I + E G + I    +  +A
Sbjct: 14 SAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIA 73

Query: 71 HTLDTPLWKLLK 82
            L  P+  L +
Sbjct: 74 DILQVPVSFLFE 85


>gi|170016379|ref|YP_001727298.1| ABC transporter ATPase [Leuconostoc citreum KM20]
 gi|169803236|gb|ACA81854.1| ATPase component of ABC transporters with duplicated ATPase
          domains [Leuconostoc citreum KM20]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F +    +R+  +++Q+ +  +   ++  +S+ E G +  +ID +I L+      L 
Sbjct: 2  KNVFKSQLSVLRQRKRISQEVLAQKLFVSRQSVSKWENGDAEPDIDKLISLSDIFAVDLD 61

Query: 79 KLL 81
           LL
Sbjct: 62 FLL 64


>gi|156934014|ref|YP_001437930.1| hypothetical protein ESA_01840 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532268|gb|ABU77094.1| hypothetical protein ESA_01840 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 199

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE K+T   +  R G ++  + ELE   +  +I  +  +A  L   +  LL
Sbjct: 15 LAQKLKAWRKEHKVTLDALSQRAGVSKGMLVELEKAAANPSIAILCKVAAALGLSVADLL 74


>gi|29374794|ref|NP_813946.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|29342252|gb|AAO80018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|315578086|gb|EFU90277.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 33/56 (58%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + +   + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    + + L+
Sbjct: 19 KAVRGVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIINVLN 74


>gi|302541253|ref|ZP_07293595.1| putative helix-turn-helix domain protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302458871|gb|EFL21964.1| putative helix-turn-helix domain protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 90

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +R E   +  E+ +R+G A+  + E+E G++   +     LAH LDTP  +L 
Sbjct: 17 LGRLRAERGWSYDELASRSGLARRTVIEIEQGRTVGTLKTWHALAHALDTPFDELF 72


>gi|257057612|ref|YP_003135444.1| putative transcriptional regulator with C-terminal CBS domains
          [Saccharomonospora viridis DSM 43017]
 gi|256587484|gb|ACU98617.1| predicted transcriptional regulator with C-terminal CBS domains
          [Saccharomonospora viridis DSM 43017]
          Length = 293

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          ++  +   R    N  R+ R  A  TQ+++    G  Q  I+++E+G     + ++  + 
Sbjct: 10 MASTVTSRRKQLGNELRHARLAAGFTQQQVAEILGCTQGKINKIESGAVGAKLGDVRRML 69

Query: 71 HTLDT 75
               
Sbjct: 70 EAYGV 74


>gi|297190002|ref|ZP_06907400.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
 gi|197718661|gb|EDY62569.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
          25486]
          Length = 209

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R++   T   I + TG + S +S +ETG+    ++ ++ L       L +L
Sbjct: 14 GPRLRATREQRGATLAGISSATGISPSTLSRIETGRRKPTLEVVLRLVKEYGVSLDEL 71


>gi|2231995|gb|AAC45921.1| aldehyde dehydrogenase [Azotobacter vinelandii]
          Length = 185

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 6  VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLMEFF 65


>gi|18311546|ref|NP_563480.1| hypothetical protein CPE2564 [Clostridium perfringens str. 13]
 gi|18146230|dbj|BAB82270.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|307292241|ref|ZP_07572105.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306496747|gb|EFM66300.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
          Length = 418

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
               R  R+E   TQ+ +  + G ++S +S++E G   ++ + + ++  +L   + 
Sbjct: 9  LGEAIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRRLSAEKLNLVLDSLQEEIV 65


>gi|317057449|ref|YP_004105916.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449718|gb|ADU23282.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 195

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R  A LTQK++  +   +   +S+ E G    ++  +  LA    T +  LL
Sbjct: 10 IRQLRLAAGLTQKQLAEKVNVSDKAVSKWECGNGAPDVSLLTDLAEIFGTDVNTLL 65


>gi|300814822|ref|ZP_07095058.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300511068|gb|EFK38332.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 367

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RKE  +TQ+E+       ++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 5  GENILQKRKERGITQEELAEFMMVTKASVSKWETGQSYPDILLLPKLATFFNISVDELI 63


>gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 101

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +R R +   S+ +  ER    +   ++RK   +TQ ++    G  Q  IS++E G   ++
Sbjct: 17 KRARIDAIKSEMVDAER---GHELASLRKAQGMTQVQVAKAMGVTQGRISQIERGGVRLD 73

Query: 63 IDNMIILAHTLDTPL 77
             M    H +   L
Sbjct: 74 TSTMSAYLHAIGGEL 88


>gi|227488686|ref|ZP_03919002.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum
          ATCC 51867]
 gi|227091347|gb|EEI26659.1| transcriptional regulator ClgR [Corynebacterium glucuronolyticum
          ATCC 51867]
          Length = 85

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R +  LT +++ +    +  ++SELE G+  ++ + +  +   L   + 
Sbjct: 4  REALGTALRTFRADNHLTLRQLADLARVSPGYLSELERGRKEVSSELLASVCRALGVSVA 63

Query: 79 KLL 81
           +L
Sbjct: 64 DVL 66


>gi|268591074|ref|ZP_06125295.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
 gi|291313881|gb|EFE54334.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rettgeri DSM 1131]
          Length = 106

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IRKE  LT +E+  R   +Q  IS  ETGK+ +  + M  +    +     L 
Sbjct: 13 GQYLRGIRKERNLTGEELAKRLNISQQQISRYETGKTKLTFEMMDTILLIFNKSWRDLF 71


>gi|221232714|ref|YP_002511868.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|225855479|ref|YP_002736991.1| transcriptional activator [Streptococcus pneumoniae JJA]
 gi|220675176|emb|CAR69760.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225723991|gb|ACO19844.1| transcriptional activator [Streptococcus pneumoniae JJA]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|167763862|ref|ZP_02435989.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC
          43183]
 gi|167697978|gb|EDS14557.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC
          43183]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|167463651|ref|ZP_02328740.1| predicted transcription regulator, containing DNA-binding HTH
          domain [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 64

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+E  ++Q+++    G ++  I  +E G+   ++     +    +  +  + 
Sbjct: 3  NRVRELREERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVF 60


>gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472]
 gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum
          ATCC 12472]
          Length = 181

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q+E+  R G     IS +E  + + ++ ++  +   L   L +  
Sbjct: 3  VGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPITLAEFF 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|103487196|ref|YP_616757.1| XRE family transcriptional regulator [Sphingopyxis alaskensis
          RB2256]
 gi|98977273|gb|ABF53424.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis
          RB2256]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R +R+   LT +E+  R         I  LETG  T+++  M  +A  LD    +L+
Sbjct: 3  NSIRTVRRAKGLTLEEVAQRCDPPTTAQTIGRLETGTRTLSLGWMNRIAAALDVDAAELV 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|25010888|ref|NP_735283.1| hypothetical protein gbs0833 [Streptococcus agalactiae NEM316]
 gi|77413146|ref|ZP_00789346.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 515]
 gi|23095267|emb|CAD46477.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160847|gb|EAO71958.1| transcriptional regulator, Cro/CI family-related protein
          [Streptococcus agalactiae 515]
          Length = 71

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +I  N  + +R    + Q E+   TG ++  IS +E G+ T ++   + ++      L  
Sbjct: 3  LILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKVSQVFKESLEN 62

Query: 80 LL 81
          + 
Sbjct: 63 VF 64


>gi|328466150|gb|EGF37309.1| transcriptional regulator, XRE family protein [Lactobacillus
          helveticus MTCC 5463]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS LE  K   I+I  +  +A  L+T    +
Sbjct: 5  LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTNTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus
          pseudintermedius ED99]
          Length = 190

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  RKE +L+Q  +  +   +   IS  E  ++  ++ ++I+L+   +  L +L+
Sbjct: 3  VGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDLYHLIVLSSLFNVSLDQLV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|317126051|ref|YP_004100163.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
 gi|315590139|gb|ADU49436.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
          Length = 138

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  R+ A+L+ +++    G +  ++S++E G    + + +  +A  L+     L
Sbjct: 7  LGAYLREQRENAQLSLRQLAEIAGISNPYLSQIERGLKKPSAEILQQIAKGLEVSAESL 65


>gi|315106651|gb|EFT78627.1| cupin domain protein [Propionibacterium acnes HL030PA1]
          Length = 194

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 26/73 (35%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +               +  R   + T  ++ +  G ++  +  +E G     +  ++ L+
Sbjct: 1  MDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLS 60

Query: 71 HTLDTPLWKLLKP 83
            L   L  L++P
Sbjct: 61 DALGVGLPALVEP 73


>gi|326779215|ref|ZP_08238480.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
 gi|326659548|gb|EGE44394.1| helix-turn-helix domain protein [Streptomyces cf. griseus
          XylebKG-1]
          Length = 265

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  R+ A LTQ+E+ +     +S I+ +E G+   + ++   L   L T
Sbjct: 5  YGEWLKAQREAAGLTQQELADLAFMTRSHIAHIEAGRRMPSGEDAQRLDRALGT 58


>gi|294013107|ref|YP_003546567.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
 gi|292676437|dbj|BAI97955.1| Xre-family transcriptional regulator [Sphingobium japonicum
          UT26S]
          Length = 471

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R ++     R +R+E  L Q  +    G + S+++ LE  +  +    ++ LA+  D  
Sbjct: 4  DRKLYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLLRLANVYDID 63

Query: 77 LWKLL 81
          +   +
Sbjct: 64 IRDFV 68


>gi|302562555|ref|ZP_07314897.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302480173|gb|EFL43266.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 384

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R    L+Q E+    G +   +S LE+G        +  LA  L      L 
Sbjct: 7  FGRRLKRLRTARGLSQAEVVGD-GMSTGHLSRLESGGRRPTERTVAYLARRLGVDASALT 65

Query: 82 KP 83
           P
Sbjct: 66 GP 67


>gi|262194441|ref|YP_003265650.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262077788|gb|ACY13757.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 79

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           N  R+ RK   LTQ++   R   +  +   +E G +  ++  +  LA    
Sbjct: 10 GNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGAAIPSVSMLRRLAVAFG 61


>gi|218132388|ref|ZP_03461192.1| hypothetical protein BACPEC_00247 [Bacteroides pectinophilus ATCC
          43243]
 gi|217992726|gb|EEC58728.1| hypothetical protein BACPEC_00247 [Bacteroides pectinophilus ATCC
          43243]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R IR +   TQ  +  R   +    S++E G+  ++++ M+ +          LL
Sbjct: 9  VGDALRTIRNKLGYTQNNMAERLDVSYIHYSQIEQGRHRMSLELMMKIVSEFGIEPNTLL 68


>gi|254419340|ref|ZP_05033064.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3]
 gi|196185517|gb|EDX80493.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
            L E+       + +R+ A L+Q++   R    +      E G   + +D +I LA  +
Sbjct: 8  TTLTEQQSLGEALKRLRQRAGLSQEQAAERAEIVEITWRRYEKGVRGVTLDKLIGLAMAI 67

Query: 74 DTPLWKLL 81
                LL
Sbjct: 68 GFDRDALL 75


>gi|120404585|ref|YP_954414.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii
          PYR-1]
 gi|119957403|gb|ABM14408.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii
          PYR-1]
          Length = 195

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +T +++  R+    S +S LE+GK  + +D++  LA  L     +LL+
Sbjct: 26 GMTLEDVATRSNIDISTLSRLESGKRRLALDHLPRLASALSVSTDELLR 74


>gi|27376700|ref|NP_768229.1| hypothetical protein bsl1589 [Bradyrhizobium japonicum USDA 110]
 gi|27349841|dbj|BAC46854.1| bsl1589 [Bradyrhizobium japonicum USDA 110]
          Length = 78

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              ++ +       +RK A L Q ++ N+ G  QSW++ LE+G+  I++  +I L   +
Sbjct: 6  TSPIQKKL-AAMLVELRKGAGLRQVDLANKLGVYQSWVTHLESGQRRIDVVELIELGRAI 64

Query: 74 DTPLWKLLK 82
               ++++
Sbjct: 65 GFDPAEVVR 73


>gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK405]
 gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK678]
 gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1]
 gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK1058]
          Length = 167

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62


>gi|289644398|ref|ZP_06476479.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289505791|gb|EFD26809.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R+ R+  +L+Q E+ N+   +   +S +ETG+S    + +I L+  L+ PL +
Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMIIRLSEHLNVPLRE 68


>gi|238750620|ref|ZP_04612120.1| Transcriptional regulator, XRE family with cupin sensor domain
          [Yersinia rohdei ATCC 43380]
 gi|238711268|gb|EEQ03486.1| Transcriptional regulator, XRE family with cupin sensor domain
          [Yersinia rohdei ATCC 43380]
          Length = 196

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R   ++T K++  + G ++S +S+LE   ++ ++  +  LA  L+T +  L+
Sbjct: 15 LGMRLRHARLAQEITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74


>gi|237811223|ref|YP_002895674.1| helix-turn-helix domain protein [Burkholderia pseudomallei
          MSHR346]
 gi|237506820|gb|ACQ99138.1| helix-turn-helix domain protein [Burkholderia pseudomallei
          MSHR346]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + IRK   L+Q+   + +  +++++S LE    +  ++ +  L   ++   
Sbjct: 3  AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTLNKLAELCEVMEVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|215430004|ref|ZP_03427923.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
 gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
             L  A    R       R +R+E  LTQ  +      + S++++LE  +  I +  ++
Sbjct: 4  SNVLPVARTYSRTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLL 63

Query: 68 ILAHTLDTP 76
          +L    D  
Sbjct: 64 LLTERFDLS 72


>gi|166091592|ref|YP_001654042.1| putative transcriptional regulator [Bacillus thuringiensis]
 gi|165875369|gb|ABY68524.1| putative transcriptional regulator [Bacillus thuringiensis]
          Length = 130

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N R +R    L  KE+ +  G A S IS  E  +   + + +  ++   +    +LL
Sbjct: 6  FGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFEMLQKISIYFNVSTDRLL 65


>gi|197123495|ref|YP_002135446.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173344|gb|ACG74317.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K]
          Length = 477

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +R++  LTQ ++ +R G + S+++ +E  +  +    +I LA      L  L
Sbjct: 8  LGAKVRALRRQRNLTQVQLADRLGISASYLNLIEHNRRPLPAQLLIKLADLFQLDLKSL 66


>gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753]
 gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753]
          Length = 194

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  +++R++ +LTQ ++  +   +   IS+ ETG+   +I  +  LA  L   + +LL
Sbjct: 7  GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRGFPDISLLKPLACALQVSIPELL 65


>gi|281354888|ref|ZP_06241382.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
 gi|281317768|gb|EFB01788.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
          Length = 174

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++RK+A+L+  ++   +G + S IS+LE  ++   +D +  LA        +LL
Sbjct: 9  LRDLRKKAQLSIADVSAGSGVSASVISKLERNQTRAELDTLYRLARVFGITAAELL 64


>gi|117621210|ref|YP_858380.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562617|gb|ABK39565.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 7   DEPHLSDAILRE-RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
              H  +A+++E         + +R E   +       TG +++ + ++E G+S+  +  
Sbjct: 33  SSKHNKEAVMQEMNQHLAQRLKGLRSELGWSLDVAARETGVSKAMLGQIERGESSPTVAT 92

Query: 66  MIILAHTLDTPLWKLLKP 83
           +  +A          ++P
Sbjct: 93  LWKIATGFRVSFSSFIEP 110


>gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118]
 gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +R+    +Q E+  R G ++  I+ LETGK   ++     +A      +  + 
Sbjct: 3  SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60


>gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp.
          cremoris SK11]
 gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp.
          cremoris SK11]
          Length = 175

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK  KLTQ+ + +  G   S IS  E G      D +  +A+ L   + +
Sbjct: 8  KFVGMKIKEFRKNKKLTQQGLADLVGVKNSAISNYEQGTRIPKRDFLFRVANALGVSIDE 67

Query: 80 LL 81
            
Sbjct: 68 FF 69


>gi|329115880|ref|ZP_08244597.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326906285|gb|EGE53199.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 108

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
              N    +R    LTQ+ +  + G   + +  +E G++  I ++ +  + + L+ 
Sbjct: 5  KSISNRIYELRLSKHLTQETLAEKAGMDVNALGRIERGQNYNIKVETLDKIINALEV 61


>gi|325979442|ref|YP_004289158.1| transcriptional regulator [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|325179370|emb|CBZ49414.1| transcriptional regulator [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 119

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RKEA LTQ+++  +    Q+  S  E G  T     +  LA   +     L
Sbjct: 1  MFPERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRTPIFPTIEKLAELFNVSTDYL 60


>gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
 gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp.
          2_1_36FAA]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 367

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
               + R R       R +R+    T  ++   +G ++S +  LE G++  +   +  L
Sbjct: 6  QSGAVLRRSRQQIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNVPSYLTLARL 65

Query: 70 AHTLDTPL 77
          A  L+  +
Sbjct: 66 AKALEVEI 73


>gi|295839000|ref|ZP_06825933.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. SPB74]
 gi|295827275|gb|EDY46352.2| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces sp. SPB74]
          Length = 279

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          F    +  R+ A LTQ+ + +    + S+I++ E+GK    +D    L + 
Sbjct: 20 FGEELKRFRETAGLTQQALGDMVYVSASYIAQFESGKRKPQLDVSERLDNV 70


>gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
 gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 475

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R +R E  L+Q+ +  R G + S+++ +E  + ++    +I L   LD  +  L
Sbjct: 10 IRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEAL 64


>gi|297157341|gb|ADI07053.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 107

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                + R E  L+Q E+  R G  Q  +S +E G +   +  +  LA  LD  L
Sbjct: 34 LGQAVYDRRIELGLSQAELAERAGMTQPQVSRMEGGDTVPTLPLLRRLAKALDGSL 89


>gi|258593399|emb|CBE69738.1| Transcriptional regulator, Cro/CI family [NC10 bacterium 'Dutch
          sediment']
          Length = 81

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R  RK+  LTQ ++    G  QS++S+ E G+  ++    I +   L       LK
Sbjct: 17 LRQKRKDRGLTQADLAATLGKPQSFVSKYEAGERLLSFVETIDVCRALGIDPATFLK 73


>gi|291464763|ref|YP_003518234.1| PbsX family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|288247469|gb|ADC45357.1| transcriptional regulator, PbsX family [Cupriavidus metallidurans
          CH34]
          Length = 110

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F    R +R+  K  Q+ +   +  +++++S LE G  +  +D +  LA  L+    
Sbjct: 12 RENFGGALRTVRRFRKAPQEALDVVS--SRTYVSSLERGLKSPTLDKIDSLAEALNVHPL 69

Query: 79 KLL 81
           L+
Sbjct: 70 TLV 72


>gi|269795618|ref|YP_003315073.1| hypothetical protein [Sanguibacter keddieii DSM 10542]
 gi|269097803|gb|ACZ22239.1| Helix-turn-helix protein [Sanguibacter keddieii DSM 10542]
          Length = 109

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R+    T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 5  RREIGDVLRDARQLQGRTLREVSSAARVSLGYLSEVERGQKEASSELLGSICEALDIPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 SILR 68


>gi|320013022|gb|ADW07871.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 394

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              +  R+ A+LTQ+E+ +R  ++ S ++++E G    N+D +  +A  L  
Sbjct: 10 GTRIKEQRRLARLTQRELADRLPYSYSLLNQVECGAKPANLDFVAAVARALHV 62


>gi|260101481|ref|ZP_05751718.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|260084695|gb|EEW68815.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS LE  K   I+I  +  +A  L+T    +
Sbjct: 5  LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTNTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|237717599|ref|ZP_04548080.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          2_2_4]
 gi|229453103|gb|EEO58894.1| helix-turn-helix domain-containing protein [Bacteroides sp.
          2_2_4]
          Length = 358

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           IF    ++ R  A  +   +  + G   ++  +S+ E GK   +   +I +A+ L+   
Sbjct: 5  EIFAKRLKSARIMAGWSMDMLCEKIGNLISKQSVSKYENGKMMPDSSVLIAIANALNLDP 64

Query: 78 WKLLKP 83
              +P
Sbjct: 65 DYFFRP 70


>gi|258516832|ref|YP_003193054.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780537|gb|ACV64431.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 8   EPHLSDAIL-RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
               +  +L ++++I  NN +     +  TQ +I    G  +S+I ++  G    ++   
Sbjct: 48  LRQDNKPVLQKDKVILRNNLKQALTLSGKTQSKIAQEIGVNRSYIGQIFRGCYDPSVKLA 107

Query: 67  IILAHTLDTPLWK 79
           +IL  +L+ P  K
Sbjct: 108 LILLQSLNYPPEK 120


>gi|228967299|ref|ZP_04128334.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228792334|gb|EEM39901.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
          Length = 114

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    + +RK   L Q+++ +    ++S ++  E G S  ++  +  LA   +  L  
Sbjct: 2  KTFSETLKTLRKSRSLRQEDLAHELNLSRSQVNNYENGFSEPDLTTLFRLASYFNVTLDV 61

Query: 80 L 80
          L
Sbjct: 62 L 62


>gi|227545534|ref|ZP_03975583.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
 gi|227184485|gb|EEI64556.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
          Length = 119

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81
            N  + R E K+TQ+E+ N T  + +++S LE G+   I    +  +A  L T + KL+
Sbjct: 5  GVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVEYIRALTLSKIAKGLKTTMEKLI 64


>gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
 gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 28/72 (38%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
                          R  R+   +T K +      ++S +S++E GK++ ++  +  L 
Sbjct: 13 DDRPSAANHGRLGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKASPSLPMLHRLV 72

Query: 71 HTLDTPLWKLLK 82
            L T +  + +
Sbjct: 73 EVLGTNIGWMFE 84


>gi|182679366|ref|YP_001833512.1| helix-turn-helix domain-containing protein [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182635249|gb|ACB96023.1| helix-turn-helix domain protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 129

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 4   RKRDEPHLSDAILRERMIFV-----NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           RK++    S+A L   +        +  +  RK   +TQ ++    G  Q ++S+LE+ +
Sbjct: 46  RKKELEEGSNAALPAEVSASLLRGDSLLKAFRKWRGMTQIDLAKAAGLGQGYLSDLESRR 105

Query: 59  STINIDNMIILAHTLDTPLWKLLK 82
                + +  LA  LD     L++
Sbjct: 106 RGGTPETLASLATALDIDPAWLVE 129


>gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl
          5]
 gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter
          diazotrophicus PAl 5]
          Length = 475

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R +R E  L+Q+ +  R G + S+++ +E  + ++    +I L   LD  +  L
Sbjct: 10 IRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEAL 64


>gi|71281030|ref|YP_270695.1| DNA-binding protein [Colwellia psychrerythraea 34H]
 gi|71146770|gb|AAZ27243.1| DNA-binding protein [Colwellia psychrerythraea 34H]
          Length = 199

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              ++IR   KLT +E  N T  A S +S++E  + +     M  LA  L+  L +L  
Sbjct: 21 GAQLKSIRIRNKLTLREAANLTNLAASTLSKIENEQISPTFTVMQKLATGLNIELPQLFT 80


>gi|73748040|ref|YP_307279.1| hypothetical protein cbdb_B6 [Dehalococcoides sp. CBDB1]
 gi|73659756|emb|CAI82363.1| hypothetical protein, containing a helix-turn-helix motif
          [Dehalococcoides sp. CBDB1]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
          E+       R++R    L+ +E+  ++G + + +S++E+G+    +   +  LA     P
Sbjct: 5  EKTNVGVYLRSLRDTKGLSLREVERKSGVSNAVLSQIESGQVKRPSPTTLYKLAELYGVP 64

Query: 77 LWKLL 81
            +L+
Sbjct: 65 YDELM 69


>gi|94311960|ref|YP_585170.1| XRE family transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|160898170|ref|YP_001563752.1| helix-turn-helix domain-containing protein [Delftia acidovorans
          SPH-1]
 gi|221067657|ref|ZP_03543762.1| helix-turn-helix domain protein [Comamonas testosteroni KF-1]
 gi|93355812|gb|ABF09901.1| transcription regulator (helix turn helix motif) XRE family
          [Cupriavidus metallidurans CH34]
 gi|160363754|gb|ABX35367.1| helix-turn-helix domain protein [Delftia acidovorans SPH-1]
 gi|220712680|gb|EED68048.1| helix-turn-helix domain protein [Comamonas testosteroni KF-1]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + IRK   L+Q+   + +  +++++S LE    +  ++ +  L   ++   
Sbjct: 3  AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|329962332|ref|ZP_08300337.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
 gi|328530193|gb|EGF57074.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|325568077|ref|ZP_08144518.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
 gi|325158278|gb|EGC70429.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
          Length = 163

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +  R++ KLTQ  +      +   IS+ E G +  +  NMI +A  LD  L  L
Sbjct: 5  ILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETL 64

Query: 81 L 81
          L
Sbjct: 65 L 65


>gi|269126908|ref|YP_003300278.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268311866|gb|ACY98240.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 270

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT----GFAQSWISELETG 57
          PRR+R        +    + F    R  R+EA LTQ+ +  R     G    ++ ++E+G
Sbjct: 3  PRRRRGN------VSPTLLAFGRQLRRYREEAGLTQESLGRRANNGRGVTSQYVGQVESG 56

Query: 58 KSTIN 62
          ++  +
Sbjct: 57 RTRCS 61


>gi|258436121|ref|ZP_05689104.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257848810|gb|EEV72795.1| conserved hypothetical protein [Staphylococcus aureus A9299]
          Length = 242

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 8  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 61


>gi|257868206|ref|ZP_05647859.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257874521|ref|ZP_05654174.1| predicted protein [Enterococcus casseliflavus EC10]
 gi|257802320|gb|EEV31192.1| predicted protein [Enterococcus casseliflavus EC30]
 gi|257808685|gb|EEV37507.1| predicted protein [Enterococcus casseliflavus EC10]
          Length = 166

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     +  R++ KLTQ  +      +   IS+ E G +  +  NMI +A  LD  L  L
Sbjct: 8  ILAMKLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|257430904|ref|ZP_05607284.1| phage repressor protein [Staphylococcus aureus subsp. aureus
          68-397]
 gi|257278334|gb|EEV08970.1| phage repressor protein [Staphylococcus aureus subsp. aureus
          68-397]
          Length = 242

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 8  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 61


>gi|296109709|ref|YP_003616658.1| transcriptional regulator, XRE family [Methanocaldococcus infernus
           ME]
 gi|295434523|gb|ADG13694.1| transcriptional regulator, XRE family [Methanocaldococcus infernus
           ME]
          Length = 307

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW- 78
            I     + +R+E K++  E+    G ++  I + E   +  ++D  I +   LD PL  
Sbjct: 122 KIDGETLKRVREEKKISVGELAEAVGVSRKTIYKYENYSANPSVDIAIKIEEYLDAPLVR 181

Query: 79  --KLLKP 83
              L +P
Sbjct: 182 GIDLFEP 188


>gi|227878377|ref|ZP_03996331.1| XRE family transcriptional regulator [Lactobacillus crispatus
          JV-V01]
 gi|256843232|ref|ZP_05548720.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850809|ref|ZP_05556202.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|312977464|ref|ZP_07789212.1| helix-turn-helix domain-containing protein [Lactobacillus
          crispatus CTV-05]
 gi|227862027|gb|EEJ69592.1| XRE family transcriptional regulator [Lactobacillus crispatus
          JV-V01]
 gi|256614652|gb|EEU19853.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712376|gb|EEU27404.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US]
 gi|310895895|gb|EFQ44961.1| helix-turn-helix domain-containing protein [Lactobacillus
          crispatus CTV-05]
          Length = 121

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS +E  K   I+I  +  +A  L+T    +
Sbjct: 7  LGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALNTTTPDI 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|218131512|ref|ZP_03460316.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM
          20697]
 gi|317476468|ref|ZP_07935717.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|329956590|ref|ZP_08297163.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT
          12056]
 gi|217986444|gb|EEC52781.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM
          20697]
 gi|316907494|gb|EFV29199.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|328523962|gb|EGF51038.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT
          12056]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +E+  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4]
 gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4]
          Length = 65

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R+   LTQ+E+    G  +  I  +E GK   ++     +A      +  + 
Sbjct: 3  NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGAKIEDIF 60


>gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 83

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++R  A LTQ E+  R G +++  + +E G    ++   + +A  L+  +  L 
Sbjct: 8  LRSVRLRAGLTQAELARRVGISRTAYTNIEKGHKHPSLVTALRIARVLNEHVEDLF 63


>gi|188587144|ref|YP_001918689.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179351831|gb|ACB86101.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R E  LTQ+E+  +TG  +  I  +E      +I+ +  LA  L+  +  LL
Sbjct: 9  LAETVKFKRNENNLTQEELSEQTGINRVMIGRIEKQDFIPSINQLEKLADALEFEITDLL 68


>gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174]
 gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 33/67 (49%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  +++   N  + +RKE  + Q+++      +   +S  ETG +  +I  ++ +A   D
Sbjct: 6  VEVDQVKIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNNMPDISILVDIADYYD 65

Query: 75 TPLWKLL 81
            + +++
Sbjct: 66 ISIPEII 72


>gi|149204591|ref|ZP_01881557.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
 gi|149142090|gb|EDM30139.1| transcriptional regulator, XRE family protein [Roseovarius sp.
          TM1035]
          Length = 85

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 31/53 (58%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           RK A L Q ++ +R    QS ++ +E+G+  +++  +++LA  +    +++L
Sbjct: 20 ARKSAGLGQDDLADRLKCHQSLVARIESGQRRVDVVELVVLARAIGFDPFEVL 72


>gi|148717848|ref|YP_001285320.1| CI-like repressor [Staphylococcus phage 80alpha]
 gi|103058634|gb|ABF71577.1| CI-like repressor [Staphylococcus phage 80alpha]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57


>gi|119443658|ref|YP_918896.1| cI-like repressor [Staphylococcus phage phiPVL108]
 gi|257425606|ref|ZP_05602030.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257436507|ref|ZP_05612551.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876]
 gi|282914289|ref|ZP_06322075.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus M899]
 gi|282924583|ref|ZP_06332251.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101]
 gi|293503366|ref|ZP_06667213.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|293510381|ref|ZP_06669087.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M809]
 gi|293530920|ref|ZP_06671602.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus M1015]
 gi|119225784|dbj|BAF41155.1| cI-like repressor [Staphylococcus phage phiPVL108]
 gi|257271300|gb|EEV03446.1| phage77ORF011 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257283858|gb|EEV13981.1| CI-like repressor [Staphylococcus aureus subsp. aureus M876]
 gi|282313418|gb|EFB43813.1| CI-like repressor [Staphylococcus aureus subsp. aureus C101]
 gi|282321470|gb|EFB51795.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus M899]
 gi|290920188|gb|EFD97254.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus M1015]
 gi|291095032|gb|EFE25297.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus 58-424]
 gi|291466745|gb|EFF09265.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus M809]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57


>gi|150015772|ref|YP_001308026.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149902237|gb|ABR33070.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 113

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  R +  LTQ E+       Q+ +S+ E+GK    +  +  +A   +  +  LL
Sbjct: 4  FADRLKEERIQKNLTQTELAKTLYLGQTSVSKYESGKQIPEMPTLQKIADFFEISIDYLL 63


>gi|332359892|gb|EGJ37706.1| transcriptional regulator [Streptococcus sanguinis SK1056]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  +   L+    +  
Sbjct: 13 KKVKYFRTQNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVIDALEMIPEEFF 70


>gi|332200001|gb|EGJ14075.1| transcriptional activator [Streptococcus pneumoniae GA47901]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|315651546|ref|ZP_07904566.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
 gi|315486201|gb|EFU76563.1| XRE family transcriptional regulator [Eubacterium saburreum DSM
          3986]
          Length = 77

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKS-TINIDNMIILAHTLDTPLWKLL 81
          N  + IRKE K+TQ+E+ +     + +IS +E  GKS   ++     +A  L   ++++ 
Sbjct: 3  NRIKEIRKEKKITQQELVDDLDITRQYISLIEKNGKSEPPSLKVANAIATKLGVCIYRVF 62


>gi|270292315|ref|ZP_06198526.1| putative transcriptional repressor [Streptococcus sp. M143]
 gi|270278294|gb|EFA24140.1| putative transcriptional repressor [Streptococcus sp. M143]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R E  LTQ ++    G  +  I  +E GK   ++     +   L   L +L 
Sbjct: 6  KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRRLGKTLDQLF 62


>gi|290959281|ref|YP_003490463.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260648807|emb|CBG71921.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
          Length = 432

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E        R  R   + +QK++    G+ QS +S LE+G+ T ++  +  +A  LD 
Sbjct: 8  QNEARRIGEVIRQARALQRRSQKDVAAALGYHQSKVSRLESGRGTEDVRTLREVAQVLDI 67

Query: 76 PLWKL 80
          P  +L
Sbjct: 68 PPHRL 72


>gi|148998259|ref|ZP_01825728.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae SP11-BS70]
 gi|147755902|gb|EDK62946.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae SP11-BS70]
 gi|332203750|gb|EGJ17817.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47368]
          Length = 88

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 78


>gi|116255394|ref|YP_771227.1| putative DNA binding protein [Rhizobium leguminosarum bv. viciae
          3841]
 gi|115260042|emb|CAK03140.1| putative DNA binding protein [Rhizobium leguminosarum bv. viciae
          3841]
          Length = 112

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          F    R  R E KLT +E+ +R G ++  +  +E G     I     +A  +   L+
Sbjct: 20 FSQLIRRARIERKLTTQELADRAGISRGLLQRIEKGDPACAIGAFFEVAAIVGVRLF 76


>gi|111657670|ref|ZP_01408400.1| hypothetical protein SpneT_02001147 [Streptococcus pneumoniae
          TIGR4]
 gi|148983966|ref|ZP_01817285.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae SP3-BS71]
 gi|194398199|ref|YP_002037248.1| hypothetical protein SPG_0533 [Streptococcus pneumoniae G54]
 gi|147924113|gb|EDK75225.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae SP3-BS71]
 gi|194357866|gb|ACF56314.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|301799637|emb|CBW32195.1| putative uncharacterized protein [Streptococcus pneumoniae
          OXC141]
          Length = 88

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 78


>gi|226946801|ref|YP_002801874.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ]
 gi|226721728|gb|ACO80899.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ]
          Length = 182

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++IRK   L+Q+E+  R G   S IS +E    + +I ++  +   +   L +  
Sbjct: 3  VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLMEFF 62


>gi|302531744|ref|ZP_07284086.1| predicted protein [Streptomyces sp. AA4]
 gi|302440639|gb|EFL12455.1| predicted protein [Streptomyces sp. AA4]
          Length = 490

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80
          R    LTQ ++    G  Q+++S++E+G   +  I+ ++ +A  L+    +L
Sbjct: 32 RNSRGLTQTDLAKLLGIHQTYLSKIESGHRKVFDIELILRIASQLELDPEEL 83


>gi|296269730|ref|YP_003652362.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092517|gb|ADG88469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI-DNMIIL 69
          + +A    R I   N R  R+    + +E+    G ++SW+S +E G   +    ++  +
Sbjct: 8  MPEASTDYRRI-GENIRRARRYRGKSLEELAGLIGRSKSWLSRVENGLIPLEKRIDIARI 66

Query: 70 AHTLDTPLWKLL 81
          A  L      LL
Sbjct: 67 ADALQVSTDDLL 78


>gi|291300333|ref|YP_003511611.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290569553|gb|ADD42518.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PLWK 79
          F    +  R   +LTQ E+        S++S+LE+ +   ++D        LDT   L  
Sbjct: 19 FGKRLKYWRLTRQLTQAELARDLNLDGSYVSKLESSRRRPSLDIARQCDDLLDTGGELAD 78

Query: 80 LLK 82
          LL 
Sbjct: 79 LLT 81


>gi|254419132|ref|ZP_05032856.1| conserved domain protein [Brevundimonas sp. BAL3]
 gi|196185309|gb|EDX80285.1| conserved domain protein [Brevundimonas sp. BAL3]
          Length = 478

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E++      R +R+    T +    R G + S++S++ET +       +I L      
Sbjct: 3  EKLFLGAKLRKLREARGWTLEACAERLGLSPSYLSQIETNQRPATARVLIALTRAFHI 60


>gi|160943854|ref|ZP_02091085.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium
          prausnitzii M21/2]
 gi|158445028|gb|EDP22031.1| hypothetical protein FAEPRAM212_01353 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103055|emb|CBL00599.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidases) [Faecalibacterium prausnitzii SL3/3]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  R++  L+Q+E+  R G+ ++S I++LE G + +    +  LA  L+T    LL
Sbjct: 7  RVRLRREQLGLSQEELARRMGYRSRSSITKLEKGINDLPQSKVEELAQALETTPAALL 64


>gi|160883113|ref|ZP_02064116.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483]
 gi|237718837|ref|ZP_04549318.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|260173280|ref|ZP_05759692.1| transcriptional regulator [Bacteroides sp. D2]
 gi|293371883|ref|ZP_06618287.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|315921554|ref|ZP_07917794.1| transcriptional regulator [Bacteroides sp. D2]
 gi|156111585|gb|EDO13330.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483]
 gi|229451969|gb|EEO57760.1| transcriptional regulator [Bacteroides sp. 2_2_4]
 gi|292633129|gb|EFF51706.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f]
 gi|295085499|emb|CBK67022.1| transcriptional regulator [Bacteroides xylanisolvens XB1A]
 gi|313695429|gb|EFS32264.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  ++ +E+  R+G A   +  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
 gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp.
          bulgaricus ND02]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  RK+  LTQKE+ +  G    + ++  E G S      +  +A  LD  + +LL
Sbjct: 4  GTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVSELL 63


>gi|312602253|ref|YP_004022098.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
 gi|312169567|emb|CBW76579.1| Transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
          Length = 320

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 2   PRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           P    ++  L+    R+  +       R +R    +T+K +   TG ++  ++ LE+G  
Sbjct: 19  PESPANDGSLAGRDPRDPFLTAMGERVRLLRARRGMTRKSLAAETGLSERHLANLESGVG 78

Query: 60  TINIDNMIILAHTLDTPLWKLL 81
             ++  +  +A  L+ PL +++
Sbjct: 79  NASVLVLRQIALALNCPLAEVI 100


>gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407]
          Length = 211

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  RKE K+ Q  +    G +   IS+ E  ++  N +N++ LA  L      LLK
Sbjct: 2  GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61


>gi|310657612|ref|YP_003935333.1| transcriptional regulator [Clostridium sticklandii DSM 519]
 gi|308824390|emb|CBH20428.1| Transcriptional regulator [Clostridium sticklandii]
          Length = 144

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          MI     + +R    LTQKE+  ++G + + I   E G  +     +  +A  L+
Sbjct: 1  MISGKKLKELRLIRNLTQKELAIKSGISDAAIRNYELGNRSPTKQQLDKIASALN 55


>gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp.
          bulgaricus PB2003/044-T3-4]
 gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp.
          lactis DSM 20072]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  RK+  LTQKE+ +  G    + ++  E G S      +  +A  LD  + +LL
Sbjct: 4  GTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVSELL 63


>gi|296139491|ref|YP_003646734.1| helix-turn-helix domain protein [Tsukamurella paurometabola DSM
          20162]
 gi|296027625|gb|ADG78395.1| helix-turn-helix domain protein [Tsukamurella paurometabola DSM
          20162]
          Length = 91

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R     N R  R     T +++ +    +  ++SE+E G+   + + +  +   LD  + 
Sbjct: 6  REAIGENLRKTRVRQSRTLRDVSSAAQVSLGYLSEVERGQKEASSELLAAICGALDVEVA 65

Query: 79 KLL 81
          +L+
Sbjct: 66 ELV 68


>gi|294495785|ref|YP_003542278.1| XRE family transcriptional regulator [Methanohalophilus mahii DSM
          5219]
 gi|292666784|gb|ADE36633.1| transcriptional regulator, XRE family [Methanohalophilus mahii
          DSM 5219]
          Length = 185

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  R E  LTQ  +  R G +Q  I+ +E G     +  +  +    D
Sbjct: 6  AQSIKQQRIELGLTQSGLAKRAGVSQPLIARIEAGDVDPRLSTLRKIFAAFD 57


>gi|289641241|ref|ZP_06473408.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289509003|gb|EFD29935.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 298

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLT-QK----EIRNRTGFAQSWISELETGKST 60
          R+ P    +              +R   +L+ Q+    E+ +RTG +QS IS +ETG  T
Sbjct: 2  RNLPDDDASARTAGAQLGAELAVLRHRHRLSGQELSGQELASRTGMSQSKISRIETGTVT 61

Query: 61 INIDNMIILAHTLDTP 76
           + D++  +   LD P
Sbjct: 62 PSPDDVEAIVRALDEP 77


>gi|260889935|ref|ZP_05901198.1| toxin-antitoxin system, antitoxin component, Xre family
          [Leptotrichia hofstadii F0254]
 gi|260860541|gb|EEX75041.1| toxin-antitoxin system, antitoxin component, Xre family
          [Leptotrichia hofstadii F0254]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F N  + +R E +LTQK + ++     S IS+ E G +  +   +  +    +  L 
Sbjct: 8  KKDFKNLLKKLRTEKRLTQKALADKINIPVSMISKYEQGTNKPSFSYLSKICRFFEVELD 67

Query: 79 KLL 81
            L
Sbjct: 68 YFL 70


>gi|229591188|ref|YP_002873307.1| putative DNA binding protein [Pseudomonas fluorescens SBW25]
 gi|229363054|emb|CAY50029.1| putative DNA binding protein [Pseudomonas fluorescens SBW25]
          Length = 208

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +N + +R +  L+   +    G +++ ++++E+G+S  +I  +  +A  L   +   L
Sbjct: 28 VAHNLQRLRSKRHLSLDGLARVCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSVAAFL 87

Query: 82 K 82
          +
Sbjct: 88 E 88


>gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme
          DSM 15981]
 gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme
          DSM 15981]
          Length = 398

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               N+R+E  +TQ+++    G ++  +S+ ETG+S  +I  +  +A      +  LL
Sbjct: 4  GATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQSCPDIQLLAPIARYFGVTIDALL 62


>gi|213691431|ref|YP_002322017.1| helix-turn-helix domain protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|213522892|gb|ACJ51639.1| helix-turn-helix domain protein [Bifidobacterium longum subsp.
          infantis ATCC 15697]
 gi|320457502|dbj|BAJ68123.1| hypothetical protein BLIJ_0529 [Bifidobacterium longum subsp.
          infantis ATCC 15697]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 15 ILRERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           L++R+ F        R+   +TQKE+  R+G +Q+ +S+L+ G  + N  + + L+  L
Sbjct: 10 ALKQRLAFNPERIALARRLEGVTQKELSTRSGLSQAKLSKLQNGIISFNESDAVKLSGAL 69

Query: 74 DTPL 77
          D P+
Sbjct: 70 DYPI 73


>gi|212696475|ref|ZP_03304603.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM
          7454]
 gi|212676568|gb|EEB36175.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM
          7454]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRKE K+TQ+E+ +    ++  I  LE G+   +I     +A      +  + 
Sbjct: 3  NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60


>gi|91789185|ref|YP_550137.1| transcriptional regulator [Polaromonas sp. JS666]
 gi|91698410|gb|ABE45239.1| transcriptional regulator, XRE family with cupin sensor domain
          [Polaromonas sp. JS666]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 40/74 (54%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
            P   DA ++   +     R+ R  A LT  ++  ++  ++S IS++E+G+++ ++  +
Sbjct: 11 AAPTPEDAAVKPPSMLGVRLRHARLVAGLTMTQVAQKSQCSESLISKIESGQASPSLAML 70

Query: 67 IILAHTLDTPLWKL 80
            +A TLDT +  L
Sbjct: 71 HRIAVTLDTNIAAL 84


>gi|49479015|ref|YP_037453.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|49330571|gb|AAT61217.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++  + G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRTKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|39997211|ref|NP_953162.1| transcriptional regulator [Geobacter sulfurreducens PCA]
 gi|39984101|gb|AAR35489.1| transcriptional regulator, putative [Geobacter sulfurreducens
          PCA]
          Length = 143

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          +RKR E   +        +FV   +++  +  L+  E+ +R   A+S +++   G+   +
Sbjct: 21 KRKRGEVVDA-------AVFVERLKSLMADKGLSSAELADRADLARSALTQFFGGERKPS 73

Query: 63 IDNMIILAHTLDTPLWKLL 81
           D ++ LA+ LD+    LL
Sbjct: 74 ADALVKLANVLDSSTDYLL 92


>gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans
          R1]
 gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans
          R1]
          Length = 64

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R E  LTQ ++ ++   ++  I+ LETGK   ++     LA      +  + +
Sbjct: 3  NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIFQ 61


>gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis
          SK330]
          Length = 167

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62


>gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505]
 gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505]
          Length = 103

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS--- 59
          R               R +     +  R    L+Q+ + +  G +     + E G+S   
Sbjct: 15 RDSSSTSQDEQWWPIARQL-GLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPG 73

Query: 60 ---TINIDNMIILAHTLDTPLWKLL 81
                +  +I LA  LD  + +L+
Sbjct: 74 TPMNPRLRTLIALATALDMQVEELV 98


>gi|312870861|ref|ZP_07730966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           3008A-a]
 gi|312872168|ref|ZP_07732241.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092252|gb|EFQ50623.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311093551|gb|EFQ51890.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF
           3008A-a]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N + +RK+  + Q E+  + G  + S ISE E G  T  I  +  +A      L  
Sbjct: 209 MFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDD 268

Query: 80  LL 81
           L+
Sbjct: 269 LM 270


>gi|309803473|ref|ZP_07697567.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           11V1-d]
 gi|325913387|ref|ZP_08175754.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
           60-B]
 gi|308164482|gb|EFO66735.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           11V1-d]
 gi|325477313|gb|EGC80458.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
           60-B]
          Length = 441

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N + +RK+  + Q E+  + G  + S ISE E G  T  I  +  +A      L  
Sbjct: 209 MFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDD 268

Query: 80  LL 81
           L+
Sbjct: 269 LM 270


>gi|298480154|ref|ZP_06998353.1| DNA-binding protein [Bacteroides sp. D22]
 gi|298273963|gb|EFI15525.1| DNA-binding protein [Bacteroides sp. D22]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  ++ +E+  R+G A   +  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168]
 gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +  E+  + G +++ I ++E G+S+     +  L+      +  L+
Sbjct: 13 GVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGESSPTATLLGRLSGAFGISMSTLI 71


>gi|320010691|gb|ADW05541.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 264

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + + F+  R  A LTQ+E+ +     +S I+ +E G+   + ++   L   L+T
Sbjct: 5  YGDWFKEQRVAAGLTQQELADAAVMTRSHIAHIEAGRRIPSKEDARRLDKALNT 58


>gi|227115336|ref|ZP_03828992.1| hypothetical protein PcarbP_20365 [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
          Length = 88

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  R  A LTQ+++    G     A+S IS+ E+G      + M   A  L+ P
Sbjct: 5  RLKTARLRANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVP 60


>gi|289805529|ref|ZP_06536158.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
          Typhi str. AG3]
          Length = 107

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  R + K++  E+  R+G ++  + E+E  K+  +I  +  +A  +   +  
Sbjct: 20 EAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|222101988|ref|YP_002546578.1| hypothetical protein Arad_12032 [Agrobacterium radiobacter K84]
 gi|221728105|gb|ACM31114.1| hypothetical protein Arad_12032 [Agrobacterium radiobacter K84]
          Length = 83

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R+   LTQ ++  R G  QS+++ LE+G+  +++   + LA  L 
Sbjct: 25 REAKGLTQTDLAARLGEYQSFVARLESGQRRVDVIEFLELAEILG 69


>gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 101

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + ++     +  RKE  +T  ++  + G +Q  +S  E G + I++ +++ +A  LDTP+
Sbjct: 6  DHLLVGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASILDTPI 65


>gi|218297117|ref|ZP_03497788.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23]
 gi|218242531|gb|EED09069.1| transcriptional regulator, XRE family [Thermus aquaticus Y51MC23]
          Length = 214

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-- 58
          MPR  R      + +       V      RK   LTQ+ +    GF+ S ++++E G   
Sbjct: 1  MPRTPR------NPLPPR----VARLVERRKALGLTQEGLARLAGFSTSLMAKIERGAVD 50

Query: 59 -STINIDNMIILAHTLDTPLWKLL 81
            +++  +++ LA  L  PL  LL
Sbjct: 51 LRSLSAQHVVGLAKALGLPLNALL 74


>gi|91206072|ref|YP_538427.1| hypothetical protein RBE_1257 [Rickettsia bellii RML369-C]
 gi|157826572|ref|YP_001495636.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389]
 gi|91069616|gb|ABE05338.1| unknown [Rickettsia bellii RML369-C]
 gi|157801876|gb|ABV78599.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     +  R    L+QKE+      +   I + E G STI +  + +LA  L+TPL  
Sbjct: 33 KIASERLKQRRIAIGLSQKELGETLDISAIQIKKYEEGISTIPVSRLYVLAKILNTPLKH 92

Query: 80 LL 81
            
Sbjct: 93 FF 94


>gi|23450984|gb|AAN32624.1|AF373594_4 unknown [Thauera aromatica]
          Length = 303

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR    +T+K +      ++  ++ LE G+  ++I  +  ++  LD PL +LL
Sbjct: 32 LGKRVREIRDRRGMTRKLVAREASVSERHLAHLEAGEGNVSIVLLRHISRALDVPLIELL 91


>gi|42520477|ref|NP_966392.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|225630365|ref|YP_002727156.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|225630759|ref|YP_002727550.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|42410216|gb|AAS14326.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|225592346|gb|ACN95365.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|225592740|gb|ACN95759.1| transcriptional regulator, putative [Wolbachia sp. wRi]
          Length = 303

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 7  RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 66

Query: 79 KLL 81
           L+
Sbjct: 67 DLI 69



 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL
Sbjct: 164 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISITDLL 222


>gi|147671814|ref|YP_001215344.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae O395]
 gi|147673183|ref|YP_001217016.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae O395]
 gi|147673763|ref|YP_001217013.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae O395]
 gi|153824168|ref|ZP_01976835.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae B33]
 gi|229508578|ref|ZP_04398081.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae BX 330286]
 gi|254226669|ref|ZP_04920247.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae V51]
 gi|254226678|ref|ZP_04920256.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae V51]
 gi|262166856|ref|ZP_06034579.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae RC27]
 gi|262166979|ref|ZP_06034698.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae RC27]
 gi|298498461|ref|ZP_07008268.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio
          cholerae MAK 757]
 gi|11134457|sp|O85264|RSR2_VIBCH RecName: Full=Cryptic phage CTXphi transcriptional repressor rstR
 gi|6851391|gb|AAF29541.1|AF220606_1 RstR [Vibrio cholerae]
 gi|11559577|gb|AAG38011.1|AF262318_2 RstR classical [Vibrio phage CTX]
 gi|21637281|gb|AAM70434.1|AF510999_1 RstR [Vibrio phage CTX]
 gi|3252903|gb|AAC24223.1| repressor [Vibrio cholerae 569B]
 gi|34980245|gb|AAQ84035.1| RstR [Vibrio cholerae]
 gi|66268071|gb|AAY43122.1| RstR [Vibrio phage CTX]
 gi|125620783|gb|EAZ49139.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae V51]
 gi|125620792|gb|EAZ49148.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae V51]
 gi|126518308|gb|EAZ75533.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae B33]
 gi|146314197|gb|ABQ18737.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae O395]
 gi|146315066|gb|ABQ19605.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae O395]
 gi|146315646|gb|ABQ20185.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae O395]
 gi|221236971|gb|ACM16038.1| RstR [Vibrio phage CTX]
 gi|221236983|gb|ACM16045.1| RstR [Vibrio phage CTX]
 gi|221236998|gb|ACM16055.1| RstR [Vibrio phage CTX]
 gi|227013372|gb|ACP09582.1| cryptic phage CTXphi transcriptional repressor RstR, classical
          [Vibrio cholerae O395]
 gi|227013375|gb|ACP09585.1| cryptic phage CTXphi transcriptional repressor RstR, classical
          [Vibrio cholerae O395]
 gi|227015379|gb|ACP11588.1| cryptic phage CTXphi transcriptional repressor RstR, classical
          [Vibrio cholerae O395]
 gi|229354532|gb|EEO19455.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae BX 330286]
 gi|258523312|gb|ACV73677.1| RstR [Vibrio phage CTX]
 gi|259046014|gb|ACV91462.1| RstR [Vibrio phage CTX]
 gi|259046023|gb|ACV91471.1| RstR [Vibrio phage CTX]
 gi|259046033|gb|ACV91480.1| RstR [Vibrio phage CTX]
 gi|259046042|gb|ACV91489.1| RstR [Vibrio phage CTX]
 gi|259046052|gb|ACV91498.1| RstR [Vibrio phage CTX]
 gi|259046061|gb|ACV91507.1| RstR [Vibrio phage CTX]
 gi|259046071|gb|ACV91516.1| RstR [Vibrio phage CTX]
 gi|259046080|gb|ACV91525.1| RstR [Vibrio phage CTX]
 gi|259046090|gb|ACV91534.1| RstR [Vibrio phage CTX]
 gi|259046099|gb|ACV91543.1| RstR [Vibrio phage CTX]
 gi|259046109|gb|ACV91552.1| RstR [Vibrio phage CTX]
 gi|259046118|gb|ACV91561.1| RstR [Vibrio phage CTX]
 gi|259130184|gb|ACV95535.1| RstR [Vibrio phage CTX]
 gi|259130202|gb|ACV95552.1| RstR [Vibrio phage CTX]
 gi|259130211|gb|ACV95561.1| RstR [Vibrio phage CTX]
 gi|259130221|gb|ACV95570.1| RstR [Vibrio phage CTX]
 gi|259130230|gb|ACV95579.1| RstR [Vibrio phage CTX]
 gi|259130246|gb|ACV95593.1| RstR [Vibrio phage CTX]
 gi|259130255|gb|ACV95602.1| RstR [Vibrio phage CTX]
 gi|262024620|gb|EEY43302.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae RC27]
 gi|262024719|gb|EEY43397.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio
          cholerae RC27]
 gi|297542794|gb|EFH78844.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio
          cholerae MAK 757]
          Length = 111

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F +  R++R E  L Q+E+ N  G  ++     E G  +  ++ +  LA     P+ +L
Sbjct: 1  MFSSKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAEL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|27377331|ref|NP_768860.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum
          USDA 110]
 gi|27350474|dbj|BAC47485.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum
          USDA 110]
          Length = 182

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IR   KL+Q+E+  R G   S IS +E+ +   ++  +  +   +   L +  
Sbjct: 6  GGRLRFIRARQKLSQRELAKRAGVTNSTISLIESNQMNPSVGALKRILDGIPMGLAEFF 64


>gi|163939160|ref|YP_001644044.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163861357|gb|ABY42416.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 71

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK+  L+Q+++  + G ++  I  +E GK   ++     +A    T +  + 
Sbjct: 3  NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIEHVF 60


>gi|77405440|ref|ZP_00782533.1| cI-like repressor [Streptococcus agalactiae H36B]
 gi|77175933|gb|EAO78709.1| cI-like repressor [Streptococcus agalactiae H36B]
          Length = 69

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R+ RK AKLTQ ++ +     Q  +  +E G+    I +++ L    +     
Sbjct: 5  EFVGEQIRHQRKLAKLTQSQLADLLETNQQTVGMMENGRRRTTIQDLVKLCKIFNASADD 64

Query: 80 LL 81
           L
Sbjct: 65 FL 66


>gi|15901010|ref|NP_345614.1| hypothetical protein SP_1144 [Streptococcus pneumoniae TIGR4]
 gi|111658183|ref|ZP_01408879.1| hypothetical protein SpneT_02000664 [Streptococcus pneumoniae
          TIGR4]
 gi|14972621|gb|AAK75254.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 29 RVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87


>gi|331269930|ref|YP_004396422.1| putative DNA-binding protein [Clostridium botulinum BKT015925]
 gi|329126480|gb|AEB76425.1| putative DNA-binding protein [Clostridium botulinum BKT015925]
          Length = 179

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 19 RMIFVNNFRNIRKEAK------LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          R       +  R           TQ+ +      +QS+I ++E+G++  +   +  +A  
Sbjct: 5  RKQLGQLLKKARSLKSEKIGKCYTQRMLAKDINRSQSYIGDIESGRTYTSFSILNEIAEA 64

Query: 73 LDTPLW 78
             P++
Sbjct: 65 CGVPIY 70


>gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14]
          Length = 211

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R  RKE K+ Q  +    G +   IS+ E  ++  N +N++ LA  L      LLK
Sbjct: 2  GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61


>gi|320528225|ref|ZP_08029389.1| toxin-antitoxin system, antitoxin component, Xre family
          [Solobacterium moorei F0204]
 gi|320131398|gb|EFW23964.1| toxin-antitoxin system, antitoxin component, Xre family
          [Solobacterium moorei F0204]
          Length = 86

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE KL+Q E+ +  G  +  I+ +E GK T ++     +A      + ++ 
Sbjct: 20 NRIKELRKEHKLSQGELADLVGTTRQTITSIEVGKYTASLPLAYKIAKQFSLSIEEVF 77


>gi|317123219|ref|YP_004097331.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
 gi|315587307|gb|ADU46604.1| helix-turn-helix domain protein [Intrasporangium calvum DSM
          43043]
          Length = 89

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-----IDNMIILAHTLD 74
               R+ R+ + L+Q+ +  R G ++ W+S LET  +        +D +  L   + 
Sbjct: 8  LGAALRDARRASGLSQEALAERAGVSRPWLSRLETAANPGAELRKVLDVLTALGLAVK 65


>gi|261251082|ref|ZP_05943656.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis
          CIP 102891]
 gi|260937955|gb|EEX93943.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis
          CIP 102891]
          Length = 188

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +N + +R +   +  +    TG +++ + ++E G+S+  +  +  +A   +  
Sbjct: 7  VGDNLKRLRSDKGWSLDKAAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVS 61


>gi|260912592|ref|ZP_05919122.1| xre family toxin-antitoxin system [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260633290|gb|EEX51450.1| xre family toxin-antitoxin system [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 10/88 (11%)

Query: 5  KRDEPHLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55
          K  E         ER  F              + RKEAK+TQ E+  R    +S+IS +E
Sbjct: 7  KEIEREFGKPGTTEREKFDEEAYAFYTGQLLLDARKEAKVTQAELAKRIHATKSYISRVE 66

Query: 56 TGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +G    +      + + L   + +++KP
Sbjct: 67 SGDIIPSAAKFYNMINALGMRI-EIVKP 93


>gi|322418240|ref|YP_004197463.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18]
 gi|320124627|gb|ADW12187.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 5  KRDEPHLSDAILRERMI-FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          KR            R +      R +R+E +LT + + + TG ++  +S++E  + T  I
Sbjct: 3  KRGCHVQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPI 62

Query: 64 DNMIILAHTLDT 75
            ++ +A  L  
Sbjct: 63 ATLLKIAKGLKV 74


>gi|238782778|ref|ZP_04626808.1| hypothetical protein yberc0001_10690 [Yersinia bercovieri ATCC
          43970]
 gi|238716438|gb|EEQ08420.1| hypothetical protein yberc0001_10690 [Yersinia bercovieri ATCC
          43970]
          Length = 75

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 28/56 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R    +TQ+ +    G  QS+++++E G+  +++   + +A  L   +  +L
Sbjct: 16 LRKQRIAKGITQESLATALGRPQSFVAKVENGERRLDVVEFVHIARLLGLKVEDVL 71


>gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 125

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +RK  KL+ +++    G  Q+ +S  E   +  +   +I +A   D     L
Sbjct: 7  MFGQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTEPDYKTLIRIAQFFDVSTDYL 66

Query: 81 L 81
          +
Sbjct: 67 I 67


>gi|262200558|ref|YP_003271766.1| hypothetical protein Gbro_0543 [Gordonia bronchialis DSM 43247]
 gi|262083905|gb|ACY19873.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                 R +A LTQ ++  R+G ++S I+  E G+++++ D    LA  L      L
Sbjct: 24 AKALVTARHKAGLTQGQLAERSGLSRSAIARAEAGEASLSSDRFWDLAKALGIRPSAL 81


>gi|222838495|gb|EEE76860.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           +++RK A ++Q ++  R G +QS ++ +E   + I++  ++ +   LD  L  L++P
Sbjct: 15 LKSLRKAAGVSQAQLAQRLGVSQSRVAAIERDPAAISVRQLMEILQLLDADL--LMRP 70


>gi|198276651|ref|ZP_03209182.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM
          17135]
 gi|198270176|gb|EDY94446.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM
          17135]
          Length = 192

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          I     +++R   +++ +E+  R G     +S +E      ++  +I +A  L   L
Sbjct: 6  IIGEKIKSLRTNQEISIQELAERAGLTVEQVSRIEENIDIPSLAPLIKIARALGVRL 62


>gi|167767579|ref|ZP_02439632.1| hypothetical protein CLOSS21_02098 [Clostridium sp. SS2/1]
 gi|167710871|gb|EDS21450.1| hypothetical protein CLOSS21_02098 [Clostridium sp. SS2/1]
          Length = 105

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 17  RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW-----ISELETGKSTINIDNMIILAH 71
            E+ +  +  + +RK+  ++QKE+  +      +     IS +E    T+    +  ++ 
Sbjct: 35  TEKNLIGHKVKQLRKKHHMSQKELSEKLETYAVYICRGSISRIEDQSRTVTDIELYAISK 94

Query: 72  TLDTPLWKLL 81
                + +L 
Sbjct: 95  IFQISIEELF 104


>gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris
          marina MBIC11017]
 gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris
          marina MBIC11017]
          Length = 216

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RK    +Q  +    G ++  ++  E+GK   +++    LA      +  + 
Sbjct: 3  NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFDPSLEMAFKLAKLFKVSIEDVF 60


>gi|152982219|ref|YP_001352353.1| Cro/CI family transcriptional regulator [Janthinobacterium sp.
          Marseille]
 gi|151282296|gb|ABR90706.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp.
          Marseille]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R  A LT  ++  +   ++S IS++E G +T ++  +  LA  LD+ +  L+
Sbjct: 23 LGVRLRHTRLVAGLTLIQLAKKAECSESLISKIERGSATPSLAMLHRLAVALDSNISSLM 82


>gi|159184446|ref|NP_353767.2| hypothetical protein Atu0743 [Agrobacterium tumefaciens str. C58]
 gi|159139759|gb|AAK86552.2| conserved hypothetical protein [Agrobacterium tumefaciens str.
          C58]
          Length = 264

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R       +  R   +L+Q ++      +   +S +E+G+S+ + + +  LA  L  P
Sbjct: 5  REHVGQVLKEWRARRRLSQLDLAIEADISARHLSFVESGRSSPSREMLAKLAEQLSMP 62


>gi|54025848|ref|YP_120090.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54017356|dbj|BAD58726.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 280

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           A+   R       R +R+ A L+  ++  R G+  S IS +E GK   +  ++      
Sbjct: 2  RAVDDARAALGARLRELRRAAHLSGVDLAARCGWHSSKISRIERGKQAPSEADLADWCAA 61

Query: 73 LD 74
           D
Sbjct: 62 CD 63


>gi|145218938|ref|YP_001129647.1| XRE family transcriptional regulator [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205102|gb|ABP36145.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides
          DSM 265]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R +  L+Q+E+  R    ++ ++++E+G   +    +   A  L TP+  
Sbjct: 4  EQIGLRIKELRSQNGLSQEELARRVELPRTAVTKIESGSQELRFRELEKFAEALGTPISA 63

Query: 80 LLK 82
          L++
Sbjct: 64 LVE 66


>gi|302876666|ref|YP_003845299.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307687341|ref|ZP_07629787.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302579523|gb|ADL53535.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 231

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               +  R +  L+QK++  + G A+++I+++E G+  I    +  L+  L   L  +
Sbjct: 4  VGERLKETRIKQGLSQKQLAKKIGAAENFINDIELGRKVIPEAIIDKLSKALGENLNDM 62


>gi|242240629|ref|YP_002988810.1| XRE family transcriptional regulator [Dickeya dadantii Ech703]
 gi|242132686|gb|ACS86988.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703]
          Length = 93

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
             +N R  A LTQ+++    G     A S +S+ E+G  T +   +   AH L+ P
Sbjct: 4  ERLKNARLRANLTQEQLGVLAGIGEETAYSRLSQYESGTHTPSFKTVCAFAHALNVP 60


>gi|238923480|ref|YP_002936996.1| hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656]
 gi|238875155|gb|ACR74862.1| Hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R +   TQ    +    + S+++ +E+GK   N+D +I +A   D  L  L+
Sbjct: 11 LGERIRKLRFKRNKTQSYFADMLYISPSYLALIESGKRVPNLDLLIHIAKFTDVTLDYLV 70


>gi|228962984|ref|ZP_04124195.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228796705|gb|EEM44103.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N + +R    +++K++ N        ++  E+G    N D +I +A+     +  L+
Sbjct: 4  FGQNLKKLRGMRGMSRKDLANELDIPYVTLTTWESGSRIPNSDKLIPIANFFGVSVSDLV 63

Query: 82 K 82
          +
Sbjct: 64 E 64


>gi|257791669|ref|YP_003182275.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317487865|ref|ZP_07946457.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
 gi|325830628|ref|ZP_08164049.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475566|gb|ACV55886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316912991|gb|EFV34508.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
 gi|325487374|gb|EGC89816.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          L E  I     +  RK   +TQKE+  + G +Q  IS+LE G    +ID M +
Sbjct: 28 LVEAKIKGYELQQARKACGMTQKEVAAKMGVSQKRISDLENG----SIDVMQV 76


>gi|218659215|ref|ZP_03515145.1| putative transcriptional regulator protein, Cro/CI family
          [Rhizobium etli IE4771]
          Length = 122

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R +R   +++Q E+    G     I + E G + ++   +  +A  LD  +  L
Sbjct: 8  IVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISVL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|166032344|ref|ZP_02235173.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC
          27755]
 gi|166028067|gb|EDR46824.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC
          27755]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R+E  LTQ E+ +       +IS +E  ++ +++  +I  A  ++T L  L+
Sbjct: 18 LGSRVKKLRQEMNLTQAEVADALHVTPGYISNVENNRTAMSLRILIYYAKLMNTTLDSLV 77


>gi|153931108|ref|YP_001385235.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
 gi|152927152|gb|ABS32652.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC
          19397]
          Length = 78

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETG---KSTINIDNMIILAHTLDT 75
           +  R+   + Q+++ +R G  Q ++S+LE     K  +N+D +  LA  L+ 
Sbjct: 2  IKIFREHKGIRQEDLASRLGITQPYLSKLENNSIYKINVNVDLIESLAIELNI 54


>gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC
          23134]
 gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC
          23134]
          Length = 269

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIR-KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M    N +++R +  K TQ+ + N  G  +S IS  E G++   +  M  +A   +  L 
Sbjct: 1  MFLSKNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAEPKLVVMNRIAQYFNITLD 60

Query: 79 KLL 81
          +LL
Sbjct: 61 QLL 63


>gi|325510651|gb|ADZ22287.1| transcriptional regulator, lacI/xre family [Clostridium
          acetobutylicum EA 2018]
          Length = 222

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + IR++AKL+QK+   + G A+ +I+E+E G+  +    +  +      
Sbjct: 5  GEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVVTESLIHRIKKLYGK 57


>gi|313765193|gb|EFS36557.1| cupin domain protein [Propionibacterium acnes HL013PA1]
 gi|313808625|gb|EFS47085.1| cupin domain protein [Propionibacterium acnes HL087PA2]
 gi|313810662|gb|EFS48376.1| cupin domain protein [Propionibacterium acnes HL083PA1]
 gi|313817084|gb|EFS54798.1| cupin domain protein [Propionibacterium acnes HL059PA1]
 gi|313819134|gb|EFS56848.1| cupin domain protein [Propionibacterium acnes HL046PA2]
 gi|313821151|gb|EFS58865.1| cupin domain protein [Propionibacterium acnes HL036PA1]
 gi|313823828|gb|EFS61542.1| cupin domain protein [Propionibacterium acnes HL036PA2]
 gi|313826931|gb|EFS64645.1| cupin domain protein [Propionibacterium acnes HL063PA1]
 gi|314916804|gb|EFS80635.1| cupin domain protein [Propionibacterium acnes HL005PA4]
 gi|314919076|gb|EFS82907.1| cupin domain protein [Propionibacterium acnes HL050PA1]
 gi|314921083|gb|EFS84914.1| cupin domain protein [Propionibacterium acnes HL050PA3]
 gi|314926168|gb|EFS89999.1| cupin domain protein [Propionibacterium acnes HL036PA3]
 gi|314931347|gb|EFS95178.1| cupin domain protein [Propionibacterium acnes HL067PA1]
 gi|314956204|gb|EFT00576.1| cupin domain protein [Propionibacterium acnes HL027PA1]
 gi|314958699|gb|EFT02801.1| cupin domain protein [Propionibacterium acnes HL002PA1]
 gi|314961006|gb|EFT05107.1| cupin domain protein [Propionibacterium acnes HL002PA2]
 gi|314968831|gb|EFT12929.1| cupin domain protein [Propionibacterium acnes HL037PA1]
 gi|314979037|gb|EFT23131.1| cupin domain protein [Propionibacterium acnes HL072PA2]
 gi|314985986|gb|EFT30078.1| cupin domain protein [Propionibacterium acnes HL005PA2]
 gi|314989291|gb|EFT33382.1| cupin domain protein [Propionibacterium acnes HL005PA3]
 gi|315081381|gb|EFT53357.1| cupin domain protein [Propionibacterium acnes HL078PA1]
 gi|315084978|gb|EFT56954.1| cupin domain protein [Propionibacterium acnes HL027PA2]
 gi|315087509|gb|EFT59485.1| cupin domain protein [Propionibacterium acnes HL002PA3]
 gi|315089583|gb|EFT61559.1| cupin domain protein [Propionibacterium acnes HL072PA1]
 gi|315100018|gb|EFT71994.1| cupin domain protein [Propionibacterium acnes HL059PA2]
 gi|315102821|gb|EFT74797.1| cupin domain protein [Propionibacterium acnes HL046PA1]
 gi|315110582|gb|EFT82558.1| cupin domain protein [Propionibacterium acnes HL030PA2]
 gi|327325873|gb|EGE67664.1| putative Helix-turn-helix domain protein [Propionibacterium acnes
          HL096PA3]
 gi|327450333|gb|EGE96987.1| cupin domain protein [Propionibacterium acnes HL013PA2]
 gi|327455491|gb|EGF02146.1| cupin domain protein [Propionibacterium acnes HL087PA3]
 gi|327457632|gb|EGF04287.1| cupin domain protein [Propionibacterium acnes HL083PA2]
 gi|328756848|gb|EGF70464.1| cupin domain protein [Propionibacterium acnes HL087PA1]
 gi|328757733|gb|EGF71349.1| cupin domain protein [Propionibacterium acnes HL020PA1]
 gi|328759497|gb|EGF73113.1| cupin domain protein [Propionibacterium acnes HL025PA2]
          Length = 194

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R   + T  ++ +  G ++  +  +E G     +  ++ L+  L   L  L++
Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72

Query: 83 P 83
          P
Sbjct: 73 P 73


>gi|313204957|ref|YP_004043614.1| transcriptional regulator [Paludibacter propionicigenes WB4]
 gi|312444273|gb|ADQ80629.1| transcriptional regulator [Paludibacter propionicigenes WB4]
          Length = 190

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 28/60 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++I       +  +  ++++E+  R+G   + I  +E   +  ++  +I +A  L   L
Sbjct: 2  KKIIVGEKISTLCADKNISKEELAERSGLTVAQIEFIENSDTVPSLSPLIKIARALGVRL 61


>gi|299144678|ref|ZP_07037746.1| DNA-binding protein [Bacteroides sp. 3_1_23]
 gi|298515169|gb|EFI39050.1| DNA-binding protein [Bacteroides sp. 3_1_23]
          Length = 191

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     + +R++  ++ +E+  R+G A   +  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRL 62


>gi|293568994|ref|ZP_06680307.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1071]
 gi|291588427|gb|EFF20262.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1071]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           NN +  R   +LTQ+++   +  +Q+ I + E G  +I+  N  IL+  L    +
Sbjct: 12 GNNLKEARLSKQLTQEKLARLSNISQATIVKYENGLRSISKKNDRILSDVLGAESF 67


>gi|258538334|ref|YP_003172833.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc
          705]
 gi|257150010|emb|CAR88982.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc
          705]
          Length = 202

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + IR    +TQ ++  +   ++  +S  E  ++  +++ +  +A      L  L+
Sbjct: 3  FSKQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTLI 62


>gi|238761698|ref|ZP_04622673.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC
          33638]
 gi|238700212|gb|EEP92954.1| Transcriptional regulator, XRE family [Yersinia kristensenii ATCC
          33638]
          Length = 196

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ R    +T K++  + G ++S +S+LE   ++ ++  +  LA  L+T +  L+
Sbjct: 15 LGMRLRHARLAQDITLKQLALKVGCSESLLSKLENEVASPSLAMLHRLASALETNISDLM 74


>gi|262194363|ref|YP_003265572.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262077710|gb|ACY13679.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 79

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 22/52 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           N  R+ RK   LTQ++   R   +  +   +E G +  ++  +  LA    
Sbjct: 10 GNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGVAIPSVSMLRRLAVAFG 61


>gi|226328955|ref|ZP_03804473.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198]
 gi|225202141|gb|EEG84495.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198]
          Length = 125

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 11  LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           L   I     I  +  R  R++ +L+ K +  R G +Q   S  E G   I++D +  +A
Sbjct: 30  LMSKIYPISQIIGHKIRKQRQQLRLSAKVVAERVGISQQQFSRYENGLCKIDVDMLFHIA 89

Query: 71  HTLDTPLWKLLKP 83
             L       L P
Sbjct: 90  QELKVTPAFFLPP 102


>gi|254502131|ref|ZP_05114282.1| conserved domain protein [Labrenzia alexandrii DFL-11]
 gi|222438202|gb|EEE44881.1| conserved domain protein [Labrenzia alexandrii DFL-11]
          Length = 484

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 29/65 (44%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
            +L++ +   +  R +R +  L+Q E   + G +  +I+++E     +    ++ +   
Sbjct: 3  KRVLQKNLYSGHTLRQVRADTGLSQVEFAKKLGLSTPYINQIENNNRPVTASVLLAIYRV 62

Query: 73 LDTPL 77
            T L
Sbjct: 63 FGTDL 67


>gi|224475959|ref|YP_002633565.1| putative repressor, phage associated [Staphylococcus carnosus
          subsp. carnosus TM300]
 gi|222420566|emb|CAL27380.1| putative repressor, phage associated [Staphylococcus carnosus
          subsp. carnosus TM300]
          Length = 107

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F  N + +R++  L Q ++ ++ G  + S ISE E GK T  +  +  LA   +  + +
Sbjct: 1  MFSRNLKYLRQKNGLEQIDLAHKLGRKSASSISEWEKGKYTPKMSTLNKLAEIFNVSIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LM 62


>gi|254391747|ref|ZP_05006943.1| helix-turn-helix domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|294813594|ref|ZP_06772237.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|326441998|ref|ZP_08216732.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
 gi|197705430|gb|EDY51242.1| helix-turn-helix domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|294326193|gb|EFG07836.1| putative DNA-binding protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +   R+R  F    R +R E   TQ E+  R G + S +S +ETG+    
Sbjct: 9  PERSPRDR--FGQVVRALRDERGWTQDELAERLGCSGSHVSAIETGRRATT 57


>gi|192291420|ref|YP_001992025.1| phage repressor [Rhodopseudomonas palustris TIE-1]
 gi|192285169|gb|ACF01550.1| putative phage repressor [Rhodopseudomonas palustris TIE-1]
          Length = 264

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           N  R  R++   +QK++ +R G +Q  I ++E G ST+   ++  +A  L   L  L
Sbjct: 33 GNIIRQAREQKGWSQKDLADRVGISQPAIRKIE-GGSTVKSKHLPKIAQVLGLDLQHL 89


>gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N]
 gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N]
          Length = 111

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPL 77
          F +  R  R     TQKE+   +G   S I   E+G+    +   M+ LA  L    
Sbjct: 4  FSDRLRTARNTRGWTQKELAELSGLTPSAIGNYESGQRAQASASAMLKLAEVLGVSP 60


>gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 126

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R  R E  L+Q+E+  R   +   I   E+GK+ +N++N+ ++A  L  P
Sbjct: 13 GAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQLVADALSVP 66


>gi|16077549|ref|NP_388363.1| phage element (ICEBs1)transcriptional regulator (Xre family)
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308307|ref|ZP_03590154.1| hypothetical protein Bsubs1_02728 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221312629|ref|ZP_03594434.1| hypothetical protein BsubsN3_02704 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221317552|ref|ZP_03598846.1| hypothetical protein BsubsJ_02663 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221321828|ref|ZP_03603122.1| hypothetical protein BsubsS_02734 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|38503281|sp|P96631|IMMR_BACSU RecName: Full=HTH-type transcriptional regulator immR
 gi|1881293|dbj|BAA19320.1| ydcN [Bacillus subtilis]
 gi|2632782|emb|CAB12289.1| phage element (ICEBs1)transcriptional regulator (Xre family)
          [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482893|dbj|BAI83968.1| hypothetical protein BSNT_00832 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 127

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R++A  TQKE   +     + +S  E      + D ++ L++  +     
Sbjct: 1  MSLGKRLKEARQKAGYTQKEAAEKLNIGNNNLSNYERDYRDPDTDTLLKLSNLYNVSTDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|58699199|ref|ZP_00374010.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|58534286|gb|EAL58474.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
          Length = 119

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ R E   TQK++  + G     I + E G   I+I+ +  +   L   +  L+
Sbjct: 13 VGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72


>gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
 gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus
          vortex V453]
          Length = 122

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +      +R++   TQ+E+    G  ++ +S  E  +   + + +  LA   D  +  L+
Sbjct: 3  YGVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLI 62


>gi|309799894|ref|ZP_07694099.1| helix-turn-helix domain protein [Streptococcus infantis SK1302]
 gi|308116484|gb|EFO53955.1| helix-turn-helix domain protein [Streptococcus infantis SK1302]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R+E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 29 RVAIMSELIEARREQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87


>gi|306828548|ref|ZP_07461743.1| transcriptional regulator [Streptococcus mitis ATCC 6249]
 gi|304429347|gb|EFM32432.1| transcriptional regulator [Streptococcus mitis ATCC 6249]
          Length = 99

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 36/80 (45%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          ++K+   +      +E+ +  N  + +R    L Q E+    G ++  IS LE  + T +
Sbjct: 14 KKKKMCYNEIKLREKEKGMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTPS 73

Query: 63 IDNMIILAHTLDTPLWKLLK 82
          +   + ++   + P+  + +
Sbjct: 74 VVIALKISQIFNEPVESVFR 93


>gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 24/61 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R  RK   +TQ ++    G  +  +   E+G   +  + +  ++  L   +  
Sbjct: 1  MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNA 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|291008845|ref|ZP_06566818.1| SARP family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 525

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P+++R                    R +R  A LT + +  R   +QS IS++E G+  
Sbjct: 237 VPQQRRSADDQPAVPSGAPSGVAAELRRLRIAAGLTGERLSARARMSQSKISKIENGRQP 296

Query: 61  INIDNMIILAHTLDTPL 77
            +  ++  L   LD   
Sbjct: 297 ASPGDVERLLLALDASP 313


>gi|288928565|ref|ZP_06422412.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331399|gb|EFC69983.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 317 str. F0108]
          Length = 103

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 5  KRDEPHLSDAILRERMIF---------VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELE 55
          K  E         ER  F              + RKEAK+TQ E+  R   ++S+IS +E
Sbjct: 13 KEIEREFGKPGTTEREKFDEEAYAFYTGQLLLDARKEAKVTQAELAKRIHASKSYISRVE 72

Query: 56 TGKSTINIDNMIILAHTLDTPLWKLLKP 83
          +G    +      + + L   + +++KP
Sbjct: 73 SGDIIPSAAKFYNMINALGMRI-EIVKP 99


>gi|262371032|ref|ZP_06064355.1| helix-turn-helix protein [Acinetobacter johnsonii SH046]
 gi|262374562|ref|ZP_06067836.1| helix-turn-helix protein [Acinetobacter junii SH205]
 gi|262310558|gb|EEY91648.1| helix-turn-helix protein [Acinetobacter junii SH205]
 gi|262314108|gb|EEY95152.1| helix-turn-helix protein [Acinetobacter johnsonii SH046]
          Length = 100

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD--TPLWKLL 81
             R  R   ++TQ ++  R G + + +S LE G   ++ +N++ +A  L     L +L 
Sbjct: 17 ERLRKERLYLEMTQADVATRAGVSVNTVSNLEAG-RNVSFENLVRVAMVLGRLKELEELF 75

Query: 82 KP 83
          KP
Sbjct: 76 KP 77


>gi|254559712|ref|YP_003066807.1| transcriptional repressor [Methylobacterium extorquens DM4]
 gi|254266990|emb|CAX22790.1| putative transcriptional repressor [Methylobacterium extorquens
          DM4]
          Length = 70

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            R++A +TQ ++  R G  QS +S +E G   I++  ++  A  + 
Sbjct: 9  EARRKAGITQTDLAARLGLVQSVVSLIERGGRRIDLVELMEFADAVG 55


>gi|163856916|ref|YP_001631214.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163260644|emb|CAP42946.1| predicted transcriptional regulator [Bordetella petrii]
          Length = 175

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R+  KLT  ++  +TG  + ++S LE G+   ++ ++  +A  L T L  LL
Sbjct: 1  MRATRRRRKLTLAQLSAQTGLDKGFLSRLERGEKFASVGSLHTVAVALGTTLSALL 56


>gi|163740106|ref|ZP_02147508.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107]
 gi|163743413|ref|ZP_02150792.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161383243|gb|EDQ07633.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161386600|gb|EDQ10967.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 2  PRRKRD-EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          P    D  P    A   +        R+ RK+  LT +E        +S +S++E  ++ 
Sbjct: 3  PINPEDGAPVTEVAEAPDGDALGKMIRDSRKDKGLTLEEAAKAANIGRSTLSKIENNQTR 62

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           + + +  L  TLD    +L 
Sbjct: 63 PSFEIIRRLMQTLDLQTPQLF 83


>gi|86739844|ref|YP_480244.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86566706|gb|ABD10515.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 282

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTLDTP 76
           R      F+  R+    TQ +I    G  QS +S++  G+  + +++    +A  +  P
Sbjct: 26 ARRDIGTVFKIYRQWTGATQTQIAAVCGLPQSHVSDIMNGRRQVTSLEIFERIADGIGIP 85


>gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola
          BLS256]
 gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF
          311018]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +R+ +  +Q E+  R G ++  I+ LETGK   ++     +A      +  + 
Sbjct: 3  SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60


>gi|15669353|ref|NP_248158.1| hypothetical protein MJ_1164 [Methanocaldococcus jannaschii DSM
           2661]
 gi|24418741|sp|Q58564|Y1164_METJA RecName: Full=Putative HTH-type transcriptional regulatory protein
           MJ1164
 gi|1591790|gb|AAB99166.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 318

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            I     + +R+   ++  ++    G ++  I + ET  +  ++D  + +   LD PL K
Sbjct: 125 KIDGKVLKEVREAMGISVGKLAEVAGVSRKAIYKYETQMANPSVDVALKIEEFLDVPLVK 184

Query: 80  ---LLKP 83
              L +P
Sbjct: 185 GIDLFEP 191


>gi|150389955|ref|YP_001320004.1| XRE family transcriptional regulator [Alkaliphilus
          metalliredigens QYMF]
 gi|149949817|gb|ABR48345.1| transcriptional regulator, XRE family [Alkaliphilus
          metalliredigens QYMF]
          Length = 155

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLW 78
               N RN RKE  LT  E       +   +S +E G   +  +  +  + ++L   L 
Sbjct: 6  KTLGKNIRNYRKEKNLTSVEFAKHINISTGQLSNVENGNHEVFRLGLLDRITNSLGVSLG 65

Query: 79 KLLK 82
          +LL+
Sbjct: 66 ELLQ 69


>gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
          Length = 132

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 1  MPRRKRDEPHLS-DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          M  R    P  + DA+L  R          R+   LTQ ++       Q  +S  E G  
Sbjct: 1  MTTRPSSPPDDAQDALLAAR--VGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTR 58

Query: 60 TINIDNMIILAHTLDTPLWKLLK 82
             +  +  L+  L+  + +LL+
Sbjct: 59 VPTLHRLQQLSDALNCSVDQLLQ 81


>gi|332288631|ref|YP_004419483.1| hypothetical protein UMN179_00550 [Gallibacterium anatis UMN179]
 gi|330431527|gb|AEC16586.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 129

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R IR+    +Q+E+  +   + S  +++E G++ +++D +  +A   D  + +LL
Sbjct: 5  EKIRLIREMNHWSQEEMAEKMNLSPSGYAKIERGETRLHLDKLEKIAQIFDVDISELL 62


>gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14]
 gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14]
          Length = 482

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R ++     R +R+E  + Q E+    G + S+ +++E  +  +    ++ +A      
Sbjct: 7  DRKVYAHAKLRRLRREHGMNQVEMARALGISTSYANQIEQSRRPLTATVLLRIAEVFGVD 66

Query: 77 L 77
           
Sbjct: 67 P 67


>gi|291551194|emb|CBL27456.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
          Length = 170

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
            ++  I   +++        RK+  LTQ+++  + G +   IS+ ETGK   +   +  
Sbjct: 9  HQMNGGIHMNQLVTGKFIALKRKQKNLTQEQLAEKLGVSNKTISKWETGKCMPDYSIVKS 68

Query: 69 LAHTLDTPLWKLL 81
          L   L+  + +L+
Sbjct: 69 LCEELEVTVAELM 81


>gi|288559490|ref|YP_003422976.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288542200|gb|ADC46084.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 80

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
           R +R+E K++Q+++    G  +  I+ LE G+   ++     +   L+   +
Sbjct: 5  IRYLRQEVKMSQQDLAKSAGVTRQTINALENGRYNPSLLLAYNITRILNKATY 57


>gi|220908478|ref|YP_002483789.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425]
 gi|219865089|gb|ACL45428.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425]
          Length = 158

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLW 78
                 R IR    L+QKE+ ++ G     + ++E G +T +N      LA+ L  P+ 
Sbjct: 14 ETLAQYIRRIRLSLGLSQKEVADKAGIHLQSLGKIERGHTTRLNQKPKRGLAYALGLPIE 73

Query: 79 KL 80
           L
Sbjct: 74 YL 75


>gi|148993148|ref|ZP_01822714.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP9-BS68]
 gi|168489995|ref|ZP_02714194.1| transcriptional activator [Streptococcus pneumoniae SP195]
 gi|147928122|gb|EDK79140.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP9-BS68]
 gi|183571596|gb|EDT92124.1| transcriptional activator [Streptococcus pneumoniae SP195]
 gi|332072071|gb|EGI82558.1| transcriptional activator [Streptococcus pneumoniae GA17570]
          Length = 299

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|160895525|ref|YP_001561107.1| anaerobic benzoate catabolism transcriptional regulator [Delftia
          acidovorans SPH-1]
 gi|160361109|gb|ABX32722.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Delftia acidovorans SPH-1]
          Length = 304

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R    +T++ +      ++  ++ LE G   +++  +  +A  L   + +LL
Sbjct: 29 LGERVRSLRSRRGMTRRALAAAADVSERHLANLEYGTGNVSVLVLHHIAQALQCSMAELL 88


>gi|16126315|ref|NP_420879.1| Cro/CI family transcriptional regulator [Caulobacter crescentus
          CB15]
 gi|221235094|ref|YP_002517530.1| transcriptional regulator [Caulobacter crescentus NA1000]
 gi|13423557|gb|AAK24047.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus
          CB15]
 gi|220964266|gb|ACL95622.1| transcriptional regulator [Caulobacter crescentus NA1000]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R       +  R+ A LTQ E+  +TG    +++S++E G   + I+   + A +L    
Sbjct: 18 RREAGRWLKAAREAAGLTQAELAEKTGLRYYTFVSQVENGLGRVPIEAQAVWAQSLGLDP 77

Query: 78 WKLLK 82
           +  +
Sbjct: 78 TQFAR 82


>gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
 gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae
          subsp. larvae B-3650]
          Length = 137

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    R +R +   +Q+E   + G  ++ I+  E+G++T     +  +A   +T   
Sbjct: 20 KEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTD 79

Query: 79 KLL 81
           LL
Sbjct: 80 YLL 82


>gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 73

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N  R +R E   +TQ+ + +  G  +  I  LE G+   +++    +A      +  +
Sbjct: 8  VANEIRRLRFERGEMTQQALADACGVTRQTIIALEAGRYAPSLELAFRIARAFGVGVEDV 67

Query: 81 L 81
           
Sbjct: 68 F 68


>gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321]
 gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321]
          Length = 228

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +  RKE KLTQ+EI  + G +    S  E G    + + ++ L + L  P
Sbjct: 5  EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVP 57


>gi|302542945|ref|ZP_07295287.1| putative helix-turn-helix domain protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460563|gb|EFL23656.1| putative helix-turn-helix domain protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 142

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           E  +  ++ R +R+E  LTQ++   + G  Q+ +S+LE GK+ +++  M   A  L   L
Sbjct: 70  EAHLLGHHLRQLRRERGLTQQQAAAQLGITQARVSQLEQGKA-VDLAAMRAYAQALGARL 128


>gi|296506515|ref|YP_003667749.1| transcriptional regulator [Bacillus thuringiensis BMB171]
 gi|296327102|gb|ADH10029.1| transcriptional regulator [Bacillus thuringiensis BMB171]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +  ++Q+++ N  G  +  I  LE GK   +      +A  L  P+  L 
Sbjct: 6  RMKEYRVKLSMSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLF 62


>gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp.
          longum JDM301]
 gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp.
          longum JDM301]
          Length = 161

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  LTQ +  +     Q  +S  E G +  +ID + +++   + P+ K
Sbjct: 1  MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAK 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|294810942|ref|ZP_06769585.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326439425|ref|ZP_08214159.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064]
 gi|294323541|gb|EFG05184.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              + +R E  LTQ+++   + +  ++IS LE+GK   +   +  LA  L T   +L
Sbjct: 8  GRRVQRLRTERGLTQRQLAEPS-YTPAYISTLESGKVRPSETALRFLAGRLGTSYEEL 64


>gi|270261480|ref|ZP_06189753.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044964|gb|EFA18055.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 185

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L
Sbjct: 9  GKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSL 63


>gi|269468586|gb|EEZ80235.1| hypothetical protein Sup05_0706 [uncultured SUP05 cluster
          bacterium]
          Length = 131

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK---STINIDNMIILAHTLDTP 76
                 +  R+   L+QKE+ ++ G + S IS+ E+     S  ++ N+I L   L+  
Sbjct: 2  KSIAIRIKQSRELKGLSQKELADKIGVSSSAISQYESTSYFHSEPSVKNLIKLTKVLNVS 61

Query: 77 LWKL 80
             L
Sbjct: 62 FEWL 65


>gi|289578605|ref|YP_003477232.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289528318|gb|ADD02670.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 76

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + IRK   +T  E+  + G + S I  +E G    ++     +A TL   L ++ 
Sbjct: 3  NKLKEIRKSLNMTGVELAKKVGVSHSLIYMIEGGYRNPSMKLAKKIAKTLGKSLDEIF 60


>gi|212711630|ref|ZP_03319758.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens
          DSM 30120]
 gi|212685732|gb|EEB45260.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens
          DSM 30120]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 22/58 (37%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 R +R+   ++ K++    G +Q  +S  E G   I++D +   +       
Sbjct: 7  KAVGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIFSVDP 64


>gi|167755728|ref|ZP_02427855.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402]
 gi|167704667|gb|EDS19246.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402]
          Length = 145

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N   +RK  + TQ+EI  + G ++  +++ E+G+S  +ID+ + LA   +  + 
Sbjct: 2  KNMLSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTID 61

Query: 79 KLL 81
           L+
Sbjct: 62 NLI 64


>gi|164517198|emb|CAP48673.1| putative integron gene cassette protein [uncultured bacterium]
          Length = 115

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 2   PRRKRDEPHLSDAILRERM--IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
           PR  ++         R+R+      + R  R+  +L+Q ++   TG  QS IS +E  + 
Sbjct: 22  PRLSKEVIMSDYRRARKRIEVTVGESVRIFRELQELSQNQLSEITGIPQSTISAIERDRV 81

Query: 60  TINIDNMIILAHTLDTPLWKLLKP 83
            + ++   +LA  L      L+ P
Sbjct: 82  NLGVERAKVLARALKVHPAVLVFP 105


>gi|42782413|ref|NP_979660.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42738338|gb|AAS42268.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALQSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|107101758|ref|ZP_01365676.1| hypothetical protein PaerPA_01002802 [Pseudomonas aeruginosa
          PACS2]
 gi|296389278|ref|ZP_06878753.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
 gi|313110791|ref|ZP_07796645.1| putative transcriptional regulator, XRE family [Pseudomonas
          aeruginosa 39016]
 gi|310883147|gb|EFQ41741.1| putative transcriptional regulator, XRE family [Pseudomonas
          aeruginosa 39016]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
              D ++ +R    +N   +R +  L+   +   +G +++ ++++E+G+S  +I  +  
Sbjct: 19 HTEPDDLIGQR--VAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 76

Query: 69 LAHTLDTPLWKLL 81
          +A  L   +   L
Sbjct: 77 IAQGLKVSVAAFL 89


>gi|319788682|ref|YP_004148157.1| XRE family transcriptional regulator [Pseudoxanthomonas
          suwonensis 11-1]
 gi|317467194|gb|ADV28926.1| transcriptional regulator, XRE family [Pseudoxanthomonas
          suwonensis 11-1]
          Length = 65

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ R +R E   +Q E+  R   ++  ++ LETGK   ++     +A      +  +  P
Sbjct: 3  NHLRALRDEHGWSQGELAERLEVSRQTVNALETGKYDPSLPLAFRIARLFGRSIEDVFVP 62


>gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1]
 gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea
          vagans C9-1]
          Length = 192

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +  R+    +  ++   +G +++ I ++E G+S+     +  L+   D  + +LL
Sbjct: 17 GLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGESSPTATLLARLSGAFDMSMSQLL 75


>gi|295132582|ref|YP_003583258.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
 gi|294980597|gb|ADF51062.1| XRE family transcriptional regulator [Zunongwangia profunda
          SM-A87]
          Length = 102

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           +  R++  LTQ+++    G  +S+IS+LE     I    +  + +
Sbjct: 43 IQQAREDKGLTQEQLAELAGTNKSYISKLERNLKDIRFSTLQRIIN 88


>gi|258454473|ref|ZP_05702440.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937]
 gi|257863330|gb|EEV86091.1| peptidase S24 S26A and S26B [Staphylococcus aureus A5937]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57


>gi|256397770|ref|YP_003119334.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256363996|gb|ACU77493.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 288

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 1  MPRRKRDEPHLSD-AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          MP+  R    +S+ +       F    R  R   +++Q E+ NR G  Q  +S +E G+S
Sbjct: 1  MPKTSRVSTAISEISSKPPSPAFGAELRRWRTLRRVSQLELANRAGTTQRHLSFMEQGRS 60

Query: 60 TINIDNMIILAHTLDTPLWK 79
                ++ LA +L   L +
Sbjct: 61 HPGRAIVLRLAESLRLTLRE 80


>gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 165

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                 +RKE  LTQ ++  R   + S I+  ET +   +   +  +A  L   + ++
Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMTQI 68


>gi|213019902|ref|ZP_03335694.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994511|gb|EEB55167.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +  R     TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL+
Sbjct: 102 GKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSINIMDLLE 161


>gi|254392695|ref|ZP_05007869.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|197706356|gb|EDY52168.1| regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 446

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              + +R E  LTQ+++   + +  ++IS LE+GK   +   +  LA  L T   +L
Sbjct: 8  GRRVQRLRTERGLTQRQLAEPS-YTPAYISTLESGKVRPSETALRFLAGRLGTSYEEL 64


>gi|145632823|ref|ZP_01788556.1| putative cro repressor [Haemophilus influenzae 3655]
 gi|145635977|ref|ZP_01791660.1| putative cro repressor [Haemophilus influenzae PittAA]
 gi|229844114|ref|ZP_04464255.1| putative cro repressor [Haemophilus influenzae 6P18H1]
 gi|144986479|gb|EDJ93045.1| putative cro repressor [Haemophilus influenzae 3655]
 gi|145266764|gb|EDK06785.1| putative cro repressor [Haemophilus influenzae PittAA]
 gi|229813108|gb|EEP48796.1| putative cro repressor [Haemophilus influenzae 6P18H1]
          Length = 68

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          NN   IR +  +TQ+++ N  G++Q  I+  ETG  + ++     +   L+T
Sbjct: 2  NNLSQIRGQLGITQRQLANHIGWSQPRIANYETGLRSPSLSVAQKIVQALNT 53


>gi|159045315|ref|YP_001534109.1| putative transcriptional regulator [Dinoroseobacter shibae DFL
          12]
 gi|157913075|gb|ABV94508.1| putative transcriptional regulator [Dinoroseobacter shibae DFL
          12]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R+ R    +TQ+++ ++ G     I + ETG + ++   +  +A +L  P
Sbjct: 9  VGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSLGVP 63


>gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217]
 gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  RKE  LTQ  I    G  ++ IS  E+G ++   +N+  LA  L      L
Sbjct: 1  MMNERIKQRRKELGLTQPSIAKTIGLTKATISLWESGSTSPKGENLHALAKALRCAPEFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|57237282|ref|YP_178295.1| transcriptional regulator, putative [Campylobacter jejuni RM1221]
 gi|57166086|gb|AAW34865.1| transcriptional regulator, putative [Campylobacter jejuni RM1221]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAH 71
          +  N+F+ IR++  LTQ+++ N+    +  I  +E GK+ I+    DN+  L+ 
Sbjct: 1  MTANDFKQIREKLGLTQEQLGNKLNLTRQQIINIEKGKTPISKKYFDNISKLSK 54


>gi|154244507|ref|YP_001415465.1| XRE family transcriptional regulator [Xanthobacter autotrophicus
          Py2]
 gi|154158592|gb|ABS65808.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus
          Py2]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    ++ R+    +Q+++  R G   S I+  ETG+   + D++  LA+ L+     L
Sbjct: 10 IFRERLKSARELRGYSQEQLGARAGMPASSIAHFETGRK-PSFDSLRRLANALEITTDYL 68

Query: 81 L 81
          L
Sbjct: 69 L 69


>gi|84685009|ref|ZP_01012908.1| regulator of anaerobic catobolism of benzoate BzdR
          [Maritimibacter alkaliphilus HTCC2654]
 gi|84666741|gb|EAQ13212.1| regulator of anaerobic catobolism of benzoate BzdR
          [Rhodobacterales bacterium HTCC2654]
          Length = 302

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               R  R    + ++ +  ++G +  ++++LE G+  I+I  +  +AH LD
Sbjct: 29 VGERVRAARDRKGIPRRVLSEKSGVSPRYLAQLEAGEGNISIGLLQKVAHALD 81


>gi|134296885|ref|YP_001120620.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
          G4]
 gi|134140042|gb|ABO55785.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis
          G4]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 HVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|326391550|ref|ZP_08213082.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325992431|gb|EGD50891.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  + +R +  L+Q E+      ++  +S +E GK+  +++ +  LA  L+ P
Sbjct: 6  GDKIKALRLQKNLSQSELCGNF-MSRVVLSRIENGKALPSLEQLAYLAEKLEVP 58


>gi|323466439|gb|ADX70126.1| XRE family transcriptional regulator [Lactobacillus helveticus
          H10]
          Length = 117

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS LE  K   I+I  +  +A  L+T    +
Sbjct: 5  LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTNTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|317499138|ref|ZP_07957415.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316893551|gb|EFV15756.1| helix-turn-helix domain-containing protein [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 98

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +RK+A  TQ++I +      ++IS +E  +  +N+  +   A  L+  +  LL+P
Sbjct: 1  MKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLLRP 58


>gi|315032340|gb|EFT44272.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0017]
 gi|329575394|gb|EGG56937.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 88

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
            + R+EA LTQ E+  +    QS I+ +E G   ++ D +  +A  L   L 
Sbjct: 33 LYHAREEAGLTQAELAQKAHTTQSTIARIERGD-NVSFDKLDDIARALGKKLV 84


>gi|288962006|ref|YP_003452316.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914286|dbj|BAI75772.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 486

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ +F     R +R++  LTQ  +      + S++++LE  +  + +  ++ +A T +  
Sbjct: 2  QKKLFLGYKLRRLREQRGLTQASLAKTLELSPSYLNQLENNQRPLTLPVLMRIAATFELE 61

Query: 77 LWKLLK 82
          L   L+
Sbjct: 62 LSAFLE 67


>gi|302384441|ref|YP_003820264.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302195069|gb|ADL02641.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 72

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R  A  +TQ ++  R G  +  I  +E GK + +++    +A      +  + +
Sbjct: 10 NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAAVFGVEITAVFQ 69


>gi|260906262|ref|ZP_05914584.1| transcriptional regulator, XRE family protein [Brevibacterium
          linens BL2]
          Length = 160

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R++A LTQ  +  R+G AQS IS  E G+   +   + +L       L    +P
Sbjct: 8  IRRAREDAGLTQSVLAERSGVAQSVISSYEKGRREPSASALDVLLTAAGFRLVVEPEP 65


>gi|118480114|ref|YP_897265.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|228917662|ref|ZP_04081203.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|229094144|ref|ZP_04225224.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42]
 gi|229187275|ref|ZP_04314420.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1]
 gi|118419339|gb|ABK87758.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam]
 gi|228596285|gb|EEK53960.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1]
 gi|228689247|gb|EEL43068.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42]
 gi|228841899|gb|EEM87005.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 79

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|148268470|ref|YP_001247413.1| phage repressor [Staphylococcus aureus subsp. aureus JH9]
 gi|150394533|ref|YP_001317208.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
          JH1]
 gi|257136362|ref|YP_003169636.1| cI repressor-like protein [Staphylococcus phage P954]
 gi|257793283|ref|ZP_05642262.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258419779|ref|ZP_05682742.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719]
 gi|282904658|ref|ZP_06312533.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus C160]
 gi|295407324|ref|ZP_06817122.1| phage repressor [Staphylococcus aureus A8819]
 gi|297246908|ref|ZP_06930688.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|147741539|gb|ABQ49837.1| putative phage repressor [Staphylococcus aureus subsp. aureus
          JH9]
 gi|149946985|gb|ABR52921.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
          JH1]
 gi|256681204|gb|ACV04947.1| cI repressor-like protein [Staphylococcus phage P954]
 gi|257787255|gb|EEV25595.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257844190|gb|EEV68576.1| peptidase S24 S26A and S26B [Staphylococcus aureus A9719]
 gi|282594907|gb|EFB99883.1| putative prophage L54a, repressor protein [Staphylococcus aureus
          subsp. aureus C160]
 gi|294967769|gb|EFG43800.1| phage repressor [Staphylococcus aureus A8819]
 gi|297176260|gb|EFH35547.1| conserved hypothetical protein [Staphylococcus aureus A8796]
 gi|315128291|gb|EFT84315.1| peptidase S24 S26A and S26B [Staphylococcus aureus subsp. aureus
          CGS03]
 gi|329728105|gb|EGG64548.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus
          21172]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57


>gi|71736787|ref|YP_274675.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557340|gb|AAZ36551.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 25 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 84


>gi|23465974|ref|NP_696577.1| DNA binding protein [Bifidobacterium longum NCC2705]
 gi|23326688|gb|AAN25213.1| possible DNA binding protein [Bifidobacterium longum NCC2705]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 7   DEPHLSDAILRE---RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
            EP +++   RE   R    +  R +R   + T +E+  + G +  ++SE+E G+   + 
Sbjct: 100 AEPVVAEEEPREFSLRGAIGHVLRELRTRDRRTLREVSEKAGVSLGYLSEVERGQKEASS 159

Query: 64  DNMIILAHTLDTPLWKLLK 82
           + +  +A  L     ++L+
Sbjct: 160 ELLSSIADALGVSTSRMLR 178


>gi|327458674|gb|EGF05022.1| transcriptional regulator [Streptococcus sanguinis SK1057]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 32 NRLKELRARDGLNQTELARLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 90


>gi|326942848|gb|AEA18744.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          serovar chinensis CT-43]
          Length = 73

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P+ ++  
Sbjct: 5  NRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63


>gi|324324351|gb|ADY19611.1| XRE family transcriptional regulator [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 120

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I     + IR     TQ++  +    ++  +S +E+GK T + + +  +++  +  
Sbjct: 4  IIGKRIKEIRMSIGYTQQQFADSVDISKPMVSYIESGKKTPSRETVSKISNLANVS 59


>gi|288904231|ref|YP_003429452.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
 gi|288730956|emb|CBI12500.1| putative transcriptional regulator [Streptococcus gallolyticus
          UCN34]
          Length = 175

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          K   L+Q+E+  +   ++  IS  E GK+  +I++++++A      L  L+K
Sbjct: 3  KGKNLSQEELAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIK 54


>gi|288923632|ref|ZP_06417738.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288345013|gb|EFC79436.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 284

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 27/59 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R  R  A+++ +++  + G +  ++S++E G    + + +  +A  L      L
Sbjct: 9  VGDFIREQRHGAQISLRQLARQAGVSNPYLSQIERGLRRPSAEILQQIAKALRISAEVL 67


>gi|302531454|ref|ZP_07283796.1| regulator [Streptomyces sp. AA4]
 gi|302440349|gb|EFL12165.1| regulator [Streptomyces sp. AA4]
          Length = 435

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + ++  ++Q++I   TG +QS +SE+  G+  +  D +  +A  L  P
Sbjct: 15 RLLRKHGVSQRQIAAMTGQSQSEVSEILKGRQVMAYDVLTRIADGLGVP 63


>gi|239927788|ref|ZP_04684741.1| hypothetical protein SghaA1_06176 [Streptomyces ghanaensis ATCC
          14672]
          Length = 293

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                         R  R++ +++Q E+  R   +   IS +ETG+S  + + ++ LA 
Sbjct: 25 PSGTAPAAEGVGPLLRAWREQRRISQLELALRADSSARHISFIETGRSRPSEEMVLRLAE 84

Query: 72 TLDTPLWK 79
           LD P+ +
Sbjct: 85 HLDVPVRE 92


>gi|168494769|ref|ZP_02718912.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06]
 gi|183575326|gb|EDT95854.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06]
          Length = 273

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa]
          Length = 400

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLWKLLK 82
             + +R  + LTQ+ +    G +   IS+ ETG S     +   +         W L K
Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLEK 70

Query: 83 P 83
          P
Sbjct: 71 P 71


>gi|159046177|ref|YP_001541849.1| XRE family transcriptional regulator [Dinoroseobacter shibae DFL
          12]
 gi|157913936|gb|ABV95368.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
          Length = 85

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           RK A L Q ++ +R    QS ++ LE+G+  I++  +++LA  +    + +L
Sbjct: 20 ARKSAGLGQDDLADRLKCHQSLVARLESGERRIDVVELVVLARAIGFDPFDVL 72


>gi|186476299|ref|YP_001857769.1| anaerobic benzoate catabolism transcriptional regulator
          [Burkholderia phymatum STM815]
 gi|184192758|gb|ACC70723.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Burkholderia phymatum STM815]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 5  KRDEPHLSDAILRERMIF----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +R       A   ER  F        R +R    +T+K + + TG ++  ++ LE+G   
Sbjct: 13 QRANEEAPKAEREERDPFLTAMGERVRLLRARRGMTRKTLASETGLSERHLANLESGVGN 72

Query: 61 INIDNMIILAHTLDTPLWKLL 81
           ++  +  +A TL+ PL +++
Sbjct: 73 ASVLVLRQIAATLNCPLAEVI 93


>gi|145593885|ref|YP_001158182.1| helix-turn-helix domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145594207|ref|YP_001158504.1| helix-turn-helix domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145303222|gb|ABP53804.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
 gi|145303544|gb|ABP54126.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 225

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  +    +R+   LTQ+++ +R G  +  IS++E GK +   D +   A  L 
Sbjct: 155 VVGHRLAEVRRTRGLTQQQVADRMGVTKGRISQIEQGKISGQ-DIVARYATALG 207


>gi|86742835|ref|YP_483235.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86569697|gb|ABD13506.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 403

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLD 74
          + E     +    +R    +TQ E+  R G +   +++LE G+   I I  +  LA  LD
Sbjct: 1  MTEIRALGDRVAQVRVRRSMTQTELAERAGVSTDLVTKLEQGQRDGIRISTLHSLARALD 60

Query: 75 TP 76
           P
Sbjct: 61 VP 62


>gi|46203184|ref|ZP_00208841.1| COG1396: Predicted transcriptional regulators [Magnetospirillum
          magnetotacticum MS-1]
          Length = 160

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R     T  ++      + +++SE+E G+   + + +  +   L   L 
Sbjct: 36 RHVIGGILRRARLAQGRTLVDVAAAARVSTAYLSEVERGRKEASSEVLAAVCGALGLRLV 95

Query: 79 KLL 81
           L+
Sbjct: 96 DLV 98


>gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
 gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1059]
          Length = 168

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62


>gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum
          WAL-14673]
 gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum
          WAL-14673]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F       RKE  +TQ E+  + G     +S+ E      +++++  LA      + +L+
Sbjct: 6  FGMLIAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLLYPDVNSLPKLAGIFGISVDQLM 65

Query: 82 K 82
          +
Sbjct: 66 Q 66


>gi|321272298|gb|ADW80183.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of
           Nasonia vitripennis phage WOVitA1]
 gi|321272350|gb|ADW80231.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of
           Nasonia vitripennis phage WOVitB]
          Length = 312

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQ+++ ++ G     I E E G++ ++++ +  +A  L   +  LL
Sbjct: 170 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAGVSLEMLDEIAKVLSISITDLL 229



 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     RN R     TQK++  +       I + E G   I+I  +  LA  L T    
Sbjct: 14 KVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKLYELAEALSTTARD 73

Query: 80 L 80
          L
Sbjct: 74 L 74


>gi|313676267|ref|YP_004054263.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
 gi|312942965|gb|ADR22155.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +R E  L+Q  +    G  +  I+  E   +  +I+N++ +A      + +++
Sbjct: 6  NNIKYLRTEKGLSQTAMAEAVGLKRGNIASYEKELAQPSIENLVNIADYFGIDIHQIV 63


>gi|282865024|ref|ZP_06274077.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282559947|gb|EFB65496.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLL 81
           +  R +R+   +TQ ++  R+G +   I +LE G + +  I+ +  LA  LD  L +L+
Sbjct: 6  GDRVRALREFRDITQDQLAQRSGVSVDTIRKLEQGVRESARINTLRNLARALDVQLERLV 65


>gi|322420665|ref|YP_004199888.1| helix-turn-helix domain-containing protein [Geobacter sp. M18]
 gi|320127052|gb|ADW14612.1| helix-turn-helix domain protein [Geobacter sp. M18]
          Length = 78

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R  RK   LT +E     G + +++S LE GK T+ ++ ++ + H L   L
Sbjct: 10 GRAVRQKRKNDGLTLEEAAAVCGVSYAFMSALENGKETVQLNKLLQVLHCLGIDL 64


>gi|229056996|ref|ZP_04196390.1| Helix-turn-helix repressor protein [Bacillus cereus AH603]
 gi|228720273|gb|EEL71849.1| Helix-turn-helix repressor protein [Bacillus cereus AH603]
          Length = 71

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK+  L+Q+++  + G ++  I  +E GK   ++     +A    T +  + 
Sbjct: 3  NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKAFQTTIEHVF 60


>gi|224542029|ref|ZP_03682568.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525086|gb|EEF94191.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM
          15897]
          Length = 101

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              R  R +   +Q+E+  R    ++ I + E G+   +I  +  L    
Sbjct: 2  GERLRKARLKMGYSQEEVARRIDTHRTTIGKYENGECEPSIKVLAKLIEIY 52


>gi|62317249|ref|YP_223102.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
 gi|83269230|ref|YP_418521.1| helix-hairpin-helix DNA-binding domain-containing protein
          [Brucella melitensis biovar Abortus 2308]
 gi|189022510|ref|YP_001932251.1| Helix-turn-helix motif [Brucella abortus S19]
 gi|237816809|ref|ZP_04595801.1| transcriptional regulator [Brucella abortus str. 2308 A]
 gi|254690756|ref|ZP_05154010.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870]
 gi|254698535|ref|ZP_05160363.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731982|ref|ZP_05190560.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292]
 gi|256255939|ref|ZP_05461475.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68]
 gi|260544487|ref|ZP_05820308.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC
          8038]
 gi|260756327|ref|ZP_05868675.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260759755|ref|ZP_05872103.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260762994|ref|ZP_05875326.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882151|ref|ZP_05893765.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297249296|ref|ZP_06932997.1| helix-hairpin-helix DNA-binding domain-containing protein
          [Brucella abortus bv. 5 str. B3196]
 gi|62197442|gb|AAX75741.1| transcriptional regulator, hypothetical [Brucella abortus bv. 1
          str. 9-941]
 gi|82939504|emb|CAJ12476.1| Helix-turn-helix motif:Cupin domain [Brucella melitensis biovar
          Abortus 2308]
 gi|189021084|gb|ACD73805.1| Helix-turn-helix motif [Brucella abortus S19]
 gi|237787622|gb|EEP61838.1| transcriptional regulator [Brucella abortus str. 2308 A]
 gi|260097758|gb|EEW81632.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC
          8038]
 gi|260670073|gb|EEX57013.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
 gi|260673415|gb|EEX60236.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676435|gb|EEX63256.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
 gi|260871679|gb|EEX78748.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
 gi|297173165|gb|EFH32529.1| helix-hairpin-helix DNA-binding domain-containing protein
          [Brucella abortus bv. 5 str. B3196]
          Length = 182

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R    L+Q+E   R G   S IS +E  +S  ++  +  +   +   + +  
Sbjct: 6  GGRLRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAEFF 64


>gi|58697513|ref|ZP_00372774.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila simulans]
 gi|58536024|gb|EAL59708.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila simulans]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R +   TQK++  + G     + + E G   I+I+ +  +A  L   + 
Sbjct: 7  RYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVGII 66

Query: 79 KLL 81
           L+
Sbjct: 67 DLI 69



 Score = 44.2 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G+  I ++ +  +A TL   +  LL
Sbjct: 164 GKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSISITDLL 222


>gi|315127949|ref|YP_004069952.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016463|gb|ADT69801.1| Predicted transcriptional regulator [Pseudoalteromonas sp.
          SM9913]
          Length = 66

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+    RK+A L+Q+E+ +    ++  IS +ET + T ++   + +A   +T + +L 
Sbjct: 3  NHIAEFRKKAGLSQQELADAINVSRKTISTVETSRFTPSVIIALKIAQHFNTSVERLF 60


>gi|218458185|ref|ZP_03498276.1| putative transcriptional regulator protein, Cro/CI family
          [Rhizobium etli Kim 5]
          Length = 110

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R +R   +++Q E+    G     I + E G + ++   +  +A  LD  +  L
Sbjct: 8  IVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISVL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|16080491|ref|NP_391318.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221311387|ref|ZP_03593234.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221315714|ref|ZP_03597519.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          NCIB 3610]
 gi|221320629|ref|ZP_03601923.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          JH642]
 gi|221324914|ref|ZP_03606208.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          SMY]
 gi|81556692|sp|P71049|SLRR_BACSU RecName: Full=HTH-type transcriptional regulator slrR
 gi|1495278|emb|CAA96488.1| hypothetical protein [Bacillus subtilis]
 gi|1762125|gb|AAB39888.1| putative transcriptional regulator [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|1945689|emb|CAB08022.1| hypothetical protein [Bacillus subtilis]
 gi|2635951|emb|CAB15443.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
          168]
          Length = 152

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          +     R  RK    +  ++   +G ++S++S++E G     ++  +  ++ TL+  L +
Sbjct: 1  MIGRIIRLYRKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|327467252|gb|EGF12756.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK330]
          Length = 97

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  +      R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 29 RVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87


>gi|319785314|ref|YP_004144790.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
 gi|317171202|gb|ADV14740.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar
          biserrulae WSM1271]
          Length = 132

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          +F    R  R + +LT +E+  R G ++S +  +E G   + I  M   A  +   L+ 
Sbjct: 39 LFGKTIRLGRMQHRLTGQELAERIGVSRSTLQRIEKGDPKVEIGLMFEAAAIVGVKLFD 97


>gi|314942785|ref|ZP_07849604.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|314953679|ref|ZP_07856562.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|314994135|ref|ZP_07859444.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|314998285|ref|ZP_07863150.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313587738|gb|EFR66583.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313591444|gb|EFR70289.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|313594321|gb|EFR73166.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|313598476|gb|EFR77321.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
          Length = 394

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 29/57 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +R +     ++ R E  ++Q ++    G ++ +++++E G  T +I  M  +   L+
Sbjct: 3  QRNLDYRLLKDRRNEYGVSQNKLATTCGLSRPYLNQIENGGVTASIKTMRKIFDQLE 59


>gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 193

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 17  RERMIF-----VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            E+ IF         + IR +  LTQKE     G +   +  +E G  T  I   + +  
Sbjct: 86  TEKKIFNPRAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIKR 145

Query: 72  TLDTPL 77
            L  PL
Sbjct: 146 ALGKPL 151


>gi|312864429|ref|ZP_07724662.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
 gi|311100150|gb|EFQ58361.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415]
          Length = 75

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N + IR++  LTQ+E+    G  +  I  LE  +   +++  + +A   D  + ++ +
Sbjct: 11 NLKEIREKGGLTQQELAEAVGVRRETILHLENNRYNPSLELALKIAQVFDKSVEEIFR 68


>gi|300917191|ref|ZP_07133875.1| helix-turn-helix protein [Escherichia coli MS 115-1]
 gi|300415568|gb|EFJ98878.1| helix-turn-helix protein [Escherichia coli MS 115-1]
          Length = 178

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 27/58 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           + +R++   +   +   T  +++ + ++E  +S+  +  +  +A  L+ P    + P
Sbjct: 12 LKQLRQQRGWSLSRLAEATRVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP 69


>gi|300172531|ref|YP_003771696.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum
          LMG 18811]
 gi|299886909|emb|CBL90877.1| Transcriptional regulator, helix-turn-helix XRE-family
          [Leuconostoc gasicomitatum LMG 18811]
          Length = 132

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R +  ++Q+++ ++   ++  +S  E+G +T ++ N+I L       L  L+
Sbjct: 7  NQLKKYRSDLNMSQEDVADKLFVSRQAVSRWESGDATPDLTNLIKLTEIFKCSLDSLV 64


>gi|295677629|ref|YP_003606153.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
 gi|295437472|gb|ADG16642.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 34/74 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  ++       +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  
Sbjct: 21 PRSAEPFDALEQLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCK 80

Query: 69 LAHTLDTPLWKLLK 82
          +A  L   +   L+
Sbjct: 81 VAAALKVSVAAFLR 94


>gi|255974651|ref|ZP_05425237.1| transcriptional regulator [Enterococcus faecalis T2]
 gi|255967523|gb|EET98145.1| transcriptional regulator [Enterococcus faecalis T2]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            + +  RKE KL Q+E+ ++ G  +S IS++E+GK  I+ +    + + L+
Sbjct: 3  GVDLKRYRKELKLKQQELASKLGIERSLISKIESGKRVISKELEQKIINVLN 54


>gi|171778435|ref|ZP_02919593.1| hypothetical protein STRINF_00444 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282836|gb|EDT48260.1| hypothetical protein STRINF_00444 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N   +RK+ +++Q +  N    ++  +S  E GKS  +++ ++ ++      + +L+K
Sbjct: 5  NISELRKQYQMSQDDFANIFHVSRQTVSNWENGKSYPDVEMLVKISDYFGISVDQLIK 62


>gi|167747535|ref|ZP_02419662.1| hypothetical protein ANACAC_02256 [Anaerostipes caccae DSM 14662]
 gi|239623198|ref|ZP_04666229.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|167652897|gb|EDR97026.1| hypothetical protein ANACAC_02256 [Anaerostipes caccae DSM 14662]
 gi|239522164|gb|EEQ62030.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 139

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
              + +R+E  +TQ+E+      + S +S++E+G   I +     + + L+
Sbjct: 9  AEEIKRLREERDMTQEELAESAEISLSHLSKVESGSRMIGMKTYSKILYALN 60


>gi|116670018|ref|YP_830951.1| XRE family transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610127|gb|ABK02851.1| transcriptional regulator, XRE family [Arthrobacter sp. FB24]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R++R+    T +E+ +    +  ++SE+E G+   + + +  +   LD PL 
Sbjct: 5  RHEIGDVLRDVRQRQGRTLREVSHSARVSLGYLSEVERGQKEASSELLSSICSALDVPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 SMLR 68


>gi|160876037|ref|YP_001555353.1| XRE family transcriptional regulator [Shewanella baltica OS195]
 gi|160861559|gb|ABX50093.1| transcriptional regulator, XRE family [Shewanella baltica OS195]
          Length = 204

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
              R +RK   +TQ ++ +    AQ+ I +LE G        N+  LA  L T    L
Sbjct: 4  AERVRKLRKALGMTQYQLADLVSTAQTSIQKLERGDTKNPR--NIEALAKALQTTPEFL 60


>gi|78189754|ref|YP_380092.1| XRE family transcriptional regulator [Chlorobium chlorochromatii
          CaD3]
 gi|78171953|gb|ABB29049.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii
          CaD3]
          Length = 135

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          +  P     + R+   F      I K   +TQ+++  + G  +S++S +  G +   +  
Sbjct: 13 KISPVTKKFVKRQGE-FAVRVSEIMKSTGMTQRQLAEKLGKKESYVSRILAGWANPTLKT 71

Query: 66 MIILAHTLD 74
          +      + 
Sbjct: 72 ITEFEVAIG 80


>gi|332886031|gb|EGK06275.1| hypothetical protein HMPREF9456_00149 [Dysgonomonas mossii DSM
          22836]
          Length = 72

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D  + +R I     RNIR+   L+  ++ +      + +  +E G++   I  +  +   
Sbjct: 2  DKEILKRKI-GLKIRNIREGKNLSIMDLADMLDIEYNNLIRIEKGRTNPTIITLYKIGQA 60

Query: 73 LDTPLWKLL 81
          L+  L +++
Sbjct: 61 LNVKLPEIV 69


>gi|317133164|ref|YP_004092478.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
 gi|315471143|gb|ADU27747.1| helix-turn-helix domain protein [Ethanoligenens harbinense
          YUAN-3]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +   N   +RK   LTQ E+  +  +    +S+ E  +S  +I  +  LA      + 
Sbjct: 5  KPVIAKNIVELRKLTNLTQAELAGKLHYTDKAVSKWERAESVPDISVLKELAVLFGVTVD 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 YLLE 68


>gi|228942196|ref|ZP_04104736.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228975125|ref|ZP_04135684.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228981764|ref|ZP_04142059.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis
          Bt407]
 gi|228777876|gb|EEM26148.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis
          Bt407]
 gi|228784646|gb|EEM32666.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228817530|gb|EEM63615.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
          Length = 79

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|167756126|ref|ZP_02428253.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402]
 gi|167704118|gb|EDS18697.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402]
          Length = 156

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  + IR    LTQK++   +G  +  I + E  K     + ++ +A+ L+ PL
Sbjct: 4  GDKIKKIRNYRGLTQKQLGELSGIHEVAIRKYELNKVMPKQEQLLKIANALNVPL 58


>gi|148998982|ref|ZP_01826416.1| Prophage LambdaBa04, DNA-binding protein [Streptococcus
          pneumoniae SP11-BS70]
 gi|147755190|gb|EDK62243.1| Prophage LambdaBa04, DNA-binding protein [Streptococcus
          pneumoniae SP11-BS70]
          Length = 76

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 34/70 (48%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
               R+   F    +  RKE KL+Q+++  + G+++  I++ E G+S  NI N+  +  
Sbjct: 3  DKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAQWEKGESVPNIYNVEDICT 62

Query: 72 TLDTPLWKLL 81
              P   +L
Sbjct: 63 YFAFPADIIL 72


>gi|189423925|ref|YP_001951102.1| XRE family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189420184|gb|ACD94582.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             FR  R+   L Q +I ++ G ++S ++  ETG   +  + ++++A  LD     L
Sbjct: 4  AELFRRAREAKGLKQSDIADQCGISRSALARFETGSLRLAEETLLLIAPLLDIDPEFL 61


>gi|134298402|ref|YP_001111898.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134051102|gb|ABO49073.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 738

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          K+TQ E+ +  G  Q +IS++E G  ++ +D ++   + + 
Sbjct: 16 KITQAELASWLGVTQDYISKIENGNISVGLDFLLKFCNAVG 56


>gi|89893339|ref|YP_516826.1| hypothetical protein DSY0593 [Desulfitobacterium hafniense Y51]
 gi|219666611|ref|YP_002457046.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89332787|dbj|BAE82382.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536871|gb|ACL18610.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 71

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R+E  L Q+E       ++  +S +E GK   +++    +A   +  + ++ 
Sbjct: 3  NKVEQLRRERGLNQEEFAKAIRVSRQTVSSIENGKYNPSLELAFAIADFFEKSIEEIF 60


>gi|332704687|ref|ZP_08424775.1| helix-turn-helix domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554836|gb|EGJ51880.1| helix-turn-helix domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 116

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 17  RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            E  +        R +  +TQ+++  +TG  Q  ISE+E  K  I  +N   L   L+  
Sbjct: 52  TEAELPGAVLVGARAKEGITQRDLSAKTGIPQRHISEMENAKRPIGRENARKLGEALNVS 111


>gi|331090621|ref|ZP_08339472.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401061|gb|EGG80656.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 160

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++IR++ KLTQ++   +   ++  +S  E  K+  +I  +I+++      L  L+
Sbjct: 3  FGEQIKSIRQKEKLTQEQFAMKLNVSRQAVSNWENNKNLPDIGMLILMSDVFQISLDYLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|295693005|ref|YP_003601615.1| transcriptional regulator, xre family [Lactobacillus crispatus
          ST1]
 gi|295031111|emb|CBL50590.1| Transcriptional regulator, XRE family [Lactobacillus crispatus
          ST1]
          Length = 119

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS +E  K   I+I  +  +A  L+T    +
Sbjct: 5  LGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALNTTTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|296491938|ref|YP_003662405.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061]
 gi|289176825|emb|CBJ92994.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061]
          Length = 136

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQS-----WISELETGKSTINIDNM 66
          +  I +   +  N     RK   L+Q+E+    G   S      IS+ E G        +
Sbjct: 7  AKTIQKNIYMNANRLIEARKFRGLSQRELGEALGITDSETAGQHISKYERGVRLPPYKTV 66

Query: 67 IILAHTLDTPL 77
            +A  LD P 
Sbjct: 67 REIAKILDMPP 77


>gi|256849134|ref|ZP_05554567.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|312977969|ref|ZP_07789715.1| probable transcriptional regulator [Lactobacillus crispatus
          CTV-05]
 gi|256713910|gb|EEU28898.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|310895276|gb|EFQ44344.1| probable transcriptional regulator [Lactobacillus crispatus
          CTV-05]
          Length = 95

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  N  +  RK+ +LTQ+E+  + G  +  I  LE G+   +I     L    +T +  
Sbjct: 1  MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|255103139|ref|ZP_05332116.1| XRE family transcriptional regulator [Clostridium difficile
          QCD-63q42]
 gi|255308329|ref|ZP_05352500.1| XRE family transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 78

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++ R +  L++ ++    G    +I+ LE G+   +++  + +A   +T +  + 
Sbjct: 2  NKLKDFRIQKGLSRNQLGAELGLTSRYIAFLENGERVPSLNTAVKIAAYFNTSIEYIF 59


>gi|182626743|ref|ZP_02954483.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182626777|ref|ZP_02954516.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182626865|ref|ZP_02954601.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|182627176|ref|ZP_02954886.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177907426|gb|EDT70107.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177907821|gb|EDT70425.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177907877|gb|EDT70472.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177907911|gb|EDT70503.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 71

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
           +  E +    N +  R +  LTQ+ +  + G     IS  E  +   + + ++ LA  L
Sbjct: 2  KVKNEEVNLSKNLKENRLKKNLTQRALAKKCGLDFHTISLNENKERNSSFEIILRLALGL 61

Query: 74 DTPLWKLL 81
          +  L +LL
Sbjct: 62 NISLEELL 69


>gi|168217329|ref|ZP_02642954.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
 gi|182380554|gb|EDT78033.1| DNA-binding protein [Clostridium perfringens NCTC 8239]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|168209805|ref|ZP_02635430.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
 gi|170712069|gb|EDT24251.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|134103416|ref|YP_001109077.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|291006044|ref|ZP_06564017.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133916039|emb|CAM06152.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 148

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 34/76 (44%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +R +  ++ A+ +         R  R  A+++ +++  R G +  ++S++E G    + +
Sbjct: 2  ERVDKTVNKAVNQAVSDLGAYIRTQRGNAQISLRQLAKRAGVSNPYLSQVERGLRKPSAE 61

Query: 65 NMIILAHTLDTPLWKL 80
           +  +A  L      L
Sbjct: 62 ILQQIAKALRISAEAL 77


>gi|330816385|ref|YP_004360090.1| hypothetical protein bgla_1g14640 [Burkholderia gladioli BSR3]
 gi|327368778|gb|AEA60134.1| hypothetical protein bgla_1g14640 [Burkholderia gladioli BSR3]
          Length = 384

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     ++ R  A++TQ+    + G A++ +  +E GK  I+ + +   A    TP  +
Sbjct: 10 EVLGPRLKSARSLARMTQEVAAQKLGMARTTVVAIENGKRAISSEELRAFAEVYATPESE 69

Query: 80 LL 81
          LL
Sbjct: 70 LL 71


>gi|326390747|ref|ZP_08212300.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993141|gb|EGD51580.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 67

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R + KLTQKE+    G    ++S++E G     ++  I +A+  +T + ++ 
Sbjct: 2  NKLKELRMKYKLTQKELAKNLGITPDYVSQIERG-RIPGMETAIKIANFFNTTIDEIF 58


>gi|307127250|ref|YP_003879281.1| hypothetical protein SP670_1118 [Streptococcus pneumoniae 670-6B]
 gi|306484312|gb|ADM91181.1| conserved domain protein [Streptococcus pneumoniae 670-6B]
          Length = 74

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRN-RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQ+ +        +S  S++E+G   I+ID++I LA   +  L  L+
Sbjct: 3  KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLV 61


>gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
 gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                +RK+  LTQ  +  + G + S++++LE  +  + +  ++ LA       
Sbjct: 7  GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDP 61


>gi|294789222|ref|ZP_06754461.1| DNA-binding protein [Simonsiella muelleri ATCC 29453]
 gi|294482963|gb|EFG30651.1| DNA-binding protein [Simonsiella muelleri ATCC 29453]
          Length = 120

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  + +Q+E+  +   + +  +++E G+S+++ID +  +A   +  +  LL
Sbjct: 6  KIRVMREINQWSQEEMAEKLAMSANGYAKIERGQSSLSIDKLKQIAQIFNIDMVDLL 62


>gi|289640812|ref|ZP_06472983.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289509388|gb|EFD30316.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 98

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 4  RKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          R+  EP   +A    R+ F      R +R+    +Q E+    G  QS ++  E G +  
Sbjct: 13 RRMGEPGAWEAYQAARLAFELGRAVRELRQRRAWSQAELARTAGMTQSAVARFEAGGTVP 72

Query: 62 NIDNMIILAHTLDTPLWKLLKP 83
           +  +  LA  LD  L   + P
Sbjct: 73 TLPVLGRLAEALDADLDVRVTP 94


>gi|290956222|ref|YP_003487404.1| hypothetical protein SCAB_17071 [Streptomyces scabiei 87.22]
 gi|260645748|emb|CBG68839.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 330

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 32/54 (59%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            R  R++ +L+Q E+  R G +   +S +ETG+S  + + ++ LA  LD P+ +
Sbjct: 74  LRAWREQRRLSQLELALRAGSSARHVSFVETGRSRPSEEMVLRLAEHLDVPVRE 127


>gi|238758652|ref|ZP_04619827.1| DNA-binding phage-related protein [Yersinia aldovae ATCC 35236]
 gi|238703163|gb|EEP95705.1| DNA-binding phage-related protein [Yersinia aldovae ATCC 35236]
          Length = 93

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R+   LTQ+++  R G  +  IS +E G  + N+  +   A  L 
Sbjct: 21 RQAMMTELKAARQRCNLTQEDVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 76


>gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis
          Bt407]
 gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis
          Bt407]
 gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 374

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 10 IANKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|227879298|ref|ZP_03997165.1| transcriptional regulator [Lactobacillus crispatus JV-V01]
 gi|256844478|ref|ZP_05549964.1| predicted protein [Lactobacillus crispatus 125-2-CHN]
 gi|262047150|ref|ZP_06020108.1| predicted protein [Lactobacillus crispatus MV-3A-US]
 gi|227861093|gb|EEJ68745.1| transcriptional regulator [Lactobacillus crispatus JV-V01]
 gi|256613556|gb|EEU18759.1| predicted protein [Lactobacillus crispatus 125-2-CHN]
 gi|260572395|gb|EEX28957.1| predicted protein [Lactobacillus crispatus MV-3A-US]
          Length = 96

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  N  +  RK+ +LTQ+E+  + G  +  I  LE G+   +I     L    +T +  
Sbjct: 2  MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 61

Query: 80 LL 81
          L 
Sbjct: 62 LF 63


>gi|262199526|ref|YP_003270735.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262082873|gb|ACY18842.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 123

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL---- 77
               R +R+   + Q E+ +  G + +   E+E G    +ID +I ++  LD  +    
Sbjct: 10 LGQRLRLVREGLGMGQGELASACGVSDARYQEIEAGSYLPSIDELIAISDALDIDVSFFC 69

Query: 78 WKLLKP 83
            +LKP
Sbjct: 70 EDILKP 75


>gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC
          49725]
 gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC
          49725]
          Length = 437

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                +RK+  LTQ  +  + G + S++++LE  +  + +  ++ LA       
Sbjct: 7  GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDP 61


>gi|218673348|ref|ZP_03523017.1| putative transcriptional regulator [Rhizobium etli GR56]
          Length = 125

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
          F    R +R    ++QKE+      + +++S LE GK      D +  +A   + 
Sbjct: 4  FGEAVRRLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58


>gi|254477883|ref|ZP_05091268.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214028468|gb|EEB69304.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P        +        R  RKE  LT +E        +S +S++E  ++  + + + 
Sbjct: 10 TPASEAIEAPDGDALGKMIRESRKEKGLTLEEAAKAANIGRSTLSKIENNQTRPSFEIIR 69

Query: 68 ILAHTLDTPLWKLL 81
           L  TLD    +L 
Sbjct: 70 RLMQTLDLQTPQLF 83


>gi|209517499|ref|ZP_03266339.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
 gi|209502032|gb|EEA02048.1| transcriptional regulator, XRE family [Burkholderia sp. H160]
          Length = 235

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 34/74 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  ++       +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  
Sbjct: 21 PRSAEPFDALEQLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCK 80

Query: 69 LAHTLDTPLWKLLK 82
          +A  L   +   L+
Sbjct: 81 VAAALKVSVAAFLR 94


>gi|119026257|ref|YP_910102.1| putative transcriptional regulator [Bifidobacterium adolescentis
           ATCC 15703]
 gi|118765841|dbj|BAF40020.1| putative transcriptional regulator [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 158

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAHTLDTPLWKLLK 82
            R IR+    TQ E+   TG  Q  IS  ETG  + +   +D    L+  L       L+
Sbjct: 98  LREIRRTRGYTQSELSEMTGIPQPNISWFETGYRSTSGMRLDTARRLSEALQCDPVDFLE 157


>gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          tomato str. DC3000]
 gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 111

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK   L+Q ++    G     +S  E G +   I+ +I +A   +    +L
Sbjct: 1  MVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|84686781|ref|ZP_01014668.1| hypothetical protein 1099457000266_RB2654_22428 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84665212|gb|EAQ11691.1| hypothetical protein RB2654_22428 [Rhodobacterales bacterium
          HTCC2654]
          Length = 85

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 33/58 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + R +A L QK++ +R    QS I+ LE+G+  +++  +++LA  +    +++L
Sbjct: 15 QALVDARVKAGLGQKDLADRLRCHQSLIARLESGQRRVDVVELVVLACAIGFDPFEVL 72


>gi|297538223|ref|YP_003673992.1| XRE family transcriptional regulator [Methylotenera sp. 301]
 gi|297257570|gb|ADI29415.1| transcriptional regulator, XRE family [Methylotenera sp. 301]
          Length = 184

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R   +L+Q+ +  + G A + IS +E+G ++ ++  +  +   +   L +  
Sbjct: 5  LGARLKIVRLRHQLSQRALAKKAGVANATISLIESGNTSPSVSALKRILAGIPMTLAEFF 64


>gi|289627341|ref|ZP_06460295.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|330869544|gb|EGH04253.1| Fis family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. 0893_23]
          Length = 154

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R       R IR  A L +++       ++ +++ +E G+ +I+I+ +  +   L    
Sbjct: 4  REALGQVLREIRVAAGLRREDCS--AALSREYLAGVERGQRSISIEKLHSICDCLGITP 60


>gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family
          [Jonquetella anthropi E3_33 E1]
 gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family
          [Jonquetella anthropi E3_33 E1]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            N R +RK+  ++ + +      +  ++ ++E G++  ++  +  +A     
Sbjct: 9  GANIRELRKKRGISARVLAEAVNISTPFVYDIENGRTLPSVPVLNAIAQYFGV 61


>gi|240016239|ref|ZP_04722779.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
 gi|317163944|gb|ADV07485.1| putative phage associated protein [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 99

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
             F ++R +   TQ E+    G  Q ++S +E  K ++    +  LA+ L     ++
Sbjct: 28 GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEV 85


>gi|226314233|ref|YP_002774129.1| DNA-binding protein [Brevibacillus brevis NBRC 100599]
 gi|226097183|dbj|BAH45625.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76
          E   F    R  R  A LT  E+  RTG A   IS++E+   T  N+ +++ LA  LD P
Sbjct: 4  EGKTFGGILRVYRNRANLTLTELSERTGVASGTISKIESDAFTLPNMQHVMKLAKVLDIP 63

Query: 77 LWKLLKP 83
          L+  + P
Sbjct: 64 LYTAIVP 70


>gi|218677823|ref|ZP_03525720.1| putative HTH transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 110

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKVRRIRNALMLTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|206600122|ref|YP_002241627.1| gp43 [Mycobacterium phage Pacc40]
 gi|206287210|gb|ACI12554.1| gp43 [Mycobacterium phage Pacc40]
          Length = 77

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R IR+    +  E+   +G +  ++S+LE G    N      LA  L  P+  L +P
Sbjct: 10 QELRVIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 69


>gi|148994361|ref|ZP_01823604.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68]
 gi|289168600|ref|YP_003446869.1| transcriptional regulator [Streptococcus mitis B6]
 gi|293364230|ref|ZP_06610956.1| XRE family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|307702415|ref|ZP_07639371.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|315611783|ref|ZP_07886705.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
 gi|322375921|ref|ZP_08050432.1| conserved domain protein [Streptococcus sp. C300]
 gi|147927292|gb|EDK78325.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68]
 gi|288908167|emb|CBJ23009.1| transcriptional regulator [Streptococcus mitis B6]
 gi|291317076|gb|EFE57503.1| XRE family transcriptional regulator [Streptococcus oralis ATCC
          35037]
 gi|307623997|gb|EFO02978.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037]
 gi|315316198|gb|EFU64228.1| XRE family transcriptional regulator [Streptococcus sanguinis
          ATCC 49296]
 gi|321279189|gb|EFX56231.1| conserved domain protein [Streptococcus sp. C300]
          Length = 64

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE  ++Q E+    G ++  I+ +E  K    ++  + LA +L T L  L 
Sbjct: 2  NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59


>gi|29830964|ref|NP_825598.1| regulatory protein [Streptomyces avermitilis MA-4680]
 gi|29608078|dbj|BAC72133.1| putative regulatory protein [Streptomyces avermitilis MA-4680]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  I     + +R E  LTQ+++     +  ++IS LE G+   +   +  +A  L    
Sbjct: 6  EPEIIGRRVQRLRAERGLTQRQLAEPA-YTPAYISTLEAGRVRASEPALRHIADRLGVAY 64

Query: 78 WKL 80
           +L
Sbjct: 65 EEL 67


>gi|49481669|ref|YP_039048.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52140498|ref|YP_086329.1| DNA-binding protein [Bacillus cereus E33L]
 gi|196040491|ref|ZP_03107791.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196047511|ref|ZP_03114721.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225867013|ref|YP_002752391.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|301056519|ref|YP_003794730.1| DNA-binding helix-turn helix protein [Bacillus anthracis CI]
 gi|49333225|gb|AAT63871.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51973967|gb|AAU15517.1| DNA-binding protein [Bacillus cereus E33L]
 gi|196021625|gb|EDX60322.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|196028623|gb|EDX67230.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|225787723|gb|ACO27940.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|300378688|gb|ADK07592.1| DNA-binding helix-turn helix protein [Bacillus cereus biovar
          anthracis str. CI]
          Length = 73

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P+ ++  
Sbjct: 5  NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63


>gi|19746274|ref|NP_607410.1| hypothetical protein spyM18_1303 [Streptococcus pyogenes
          MGAS8232]
 gi|19748461|gb|AAL97909.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
          Length = 52

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPL 77
          ++Q+E+ N++G +++ IS +ET KS T+ +  +  LA  LD P+
Sbjct: 1  MSQEELANKSGVSRTTISLIETDKSTTVKLSTLQKLAVALDVPI 44


>gi|88855432|ref|ZP_01130096.1| hypothetical protein A20C1_01376 [marine actinobacterium
          PHSC20C1]
 gi|88815339|gb|EAR25197.1| hypothetical protein A20C1_01376 [marine actinobacterium
          PHSC20C1]
          Length = 102

 Score = 45.8 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 35/64 (54%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R++R +   T +++ ++   A  ++SE+E G+   + + +  +A  LDTP+ 
Sbjct: 5  RQEIGDVLRDVRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVAEALDTPIS 64

Query: 79 KLLK 82
           +++
Sbjct: 65 VIMR 68


>gi|325965442|ref|YP_004243347.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3]
 gi|323471529|gb|ADX75213.1| putative transcriptional regulator [Arthrobacter
          phenanthrenivorans Sphe3]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R  R+   LTQ ++  R G  QS ++  E G   I + N+  +A  L  
Sbjct: 2  VRLNRESQGLTQHQLATRMGSTQSVVARWERGDHEITMANLARIADALGV 51


>gi|323483673|ref|ZP_08089056.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum
          WAL-14163]
 gi|323692636|ref|ZP_08106868.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum
          WAL-14673]
 gi|323403009|gb|EGA95324.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum
          WAL-14163]
 gi|323503333|gb|EGB19163.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum
          WAL-14673]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 34/60 (56%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +RK   LT +++ ++   ++S +S+ E G+ +I+I  +  ++  L+  + +LL
Sbjct: 8  LGSILRKVRKLRGLTIQQLADKIQKSKSTLSKYERGEISIDILTIKEISRVLNISIDELL 67


>gi|313903103|ref|ZP_07836497.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM
          13965]
 gi|313466605|gb|EFR62125.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM
          13965]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R IR+   L+  E+  RTG   S IS+ E  +   ++D +  LA   + P+   L
Sbjct: 4  LGGRLRRIRESRNLSIYEVERRTGMHFSTISKYERNERQPSLDVLRELAALYEVPVSVFL 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|312602174|ref|YP_004022019.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica
          HKI 454]
 gi|312169488|emb|CBW76500.1| Transcriptional regulator, Cro/CI family [Burkholderia
          rhizoxinica HKI 454]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                  R+   LTQ++     G AQ+ +S++E GK    +D +  LA  L+
Sbjct: 15 VGQAVARQRRLRGLTQEQRSEAAGLAQASLSQIERGKILPGLDQLAQLAQLLN 67


>gi|293401673|ref|ZP_06645815.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304931|gb|EFE46178.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 67

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +N+R++  L+Q +I      +Q   S  ETG   I I  +I LA   +T +  L
Sbjct: 1  MVFVRLKNLREDHDLSQSDIAKYLNISQRTYSYYETGGRDIPIQILIKLADYYNTSIDYL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|270293228|ref|ZP_06199439.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M143]
 gi|270279207|gb|EFA25053.1| toxin-antitoxin system, antitoxin component, Xre family
          [Streptococcus sp. M143]
          Length = 97

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R+E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 29 RVAIMSELIEARREQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87


>gi|269217075|ref|ZP_06160929.1| transcriptional regulator, Cro/CI family [Slackia exigua ATCC
          700122]
 gi|269129212|gb|EEZ60297.1| transcriptional regulator, Cro/CI family [Slackia exigua ATCC
          700122]
          Length = 76

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R E  L Q  +   +G + + I + ETG+S + +D    LA  L   +  LL
Sbjct: 15 ARRMKGLRTERGLDQATLSRISGVSLNLIQQYETGQSAMRLDTAASLAEALGCSIDALL 73


>gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp.
          3_1_5R]
 gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R]
 gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R]
          Length = 208

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +    +RKE  LTQ++     G     I + E+G+  I+I+ ++ +A+    P+  
Sbjct: 8  ETIGDKILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLNIANYFKIPISY 67

Query: 80 LL 81
           L
Sbjct: 68 FL 69


>gi|229028239|ref|ZP_04184378.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271]
 gi|228733075|gb|EEL83918.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271]
          Length = 83

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 14 QVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73

Query: 76 PLWKLL 81
           + KL 
Sbjct: 74 TVDKLF 79


>gi|168185963|ref|ZP_02620598.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
 gi|169295958|gb|EDS78091.1| HTH-type transcriptional regulator SinR [Clostridium botulinum C
          str. Eklund]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELE-TGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  +  R++  +T K++  ++G A  ++S+LE   KS  + + M  ++  L   +  +  
Sbjct: 2  NRIKFFRQQKSMTVKKLSEKSGIAVGYVSDLENNNKSNPSREVMKKISAALGQTVMDVFF 61

Query: 83 P 83
          P
Sbjct: 62 P 62


>gi|220921966|ref|YP_002497267.1| XRE family transcriptional regulator [Methylobacterium nodulans
          ORS 2060]
 gi|219946572|gb|ACL56964.1| transcriptional regulator, XRE family [Methylobacterium nodulans
          ORS 2060]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           NN RN R    +TQ+++      +Q+ I ++E G +  +   +  +A  L   + +L
Sbjct: 5  GNNVRNARLRLGMTQEQLAEAANVSQTTIDKIERGLTKRS-KYLPWIAIALSVDISEL 61


>gi|221069664|ref|ZP_03545769.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Comamonas testosteroni KF-1]
 gi|220714687|gb|EED70055.1| transcriptional regulator, XRE family with shikimate kinase
          activity [Comamonas testosteroni KF-1]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RN+R    LT++ + +    ++  ++ LE G   ++I  +  +A  L   + +LL
Sbjct: 26 LGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQIAQALQCSMAELL 85


>gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1087]
          Length = 168

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDYLL 62


>gi|325104291|ref|YP_004273945.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145]
 gi|324973139|gb|ADY52123.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAH 71
               +  R++ +LTQ+++  + G  +S+IS++ET   + I +  +  +  
Sbjct: 58  GEMLKEAREQRQLTQEQLAQKVGKKRSYISKVETDYGNNIKLQTLKEIVE 107


>gi|320321186|gb|EFW77327.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 121

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +RK + ++Q  +  + G     +   E G     ++ +I ++   D    
Sbjct: 12 RSFVGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPG 71

Query: 79 KLL 81
          +LL
Sbjct: 72 ELL 74


>gi|308270921|emb|CBX27531.1| hypothetical protein N47_H23530 [uncultured Desulfobacterium sp.]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTIN 62
           RKR+    +   L E+   +      R ++ LTQ+ +    G  +S +S LE+ GK   +
Sbjct: 21  RKREGFRKAYDDLEEKYRLIQEMLLARSKSGLTQEAVATLMGTTKSAVSRLESAGKHAPS 80

Query: 63  IDNMIILAHTLDTPLWKLLKP 83
           I  +   A  +   L   L P
Sbjct: 81  IITLKKYAKAVGCNLEIKLVP 101


>gi|306831700|ref|ZP_07464857.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus
          TX20005]
 gi|325978639|ref|YP_004288355.1| transcriptional regulator [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
 gi|304426125|gb|EFM29240.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus
          TX20005]
 gi|325178567|emb|CBZ48611.1| transcriptional regulator [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 147

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N+R + +LTQ+E+  R    +  +S  ETG++  N D + +L+   +  +  LL
Sbjct: 7  LKNLRDKYQLTQEELAARVLVTRQAVSRWETGETQPNTDTLKLLSKEFNISINTLL 62


>gi|304406701|ref|ZP_07388356.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304344234|gb|EFM10073.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 121

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +R++  +TQ+++      +++ I+  ET  ++ NI+ +  LA      +  
Sbjct: 1  MTFGERLKELREQRNMTQQDVAIAVNKSRTDIAGYETKGTSPNIETVRRLADLFKVSIDY 60

Query: 80 LL 81
          + 
Sbjct: 61 MF 62


>gi|300917947|ref|ZP_07134577.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
 gi|300414844|gb|EFJ98154.1| toxin-antitoxin system, antitoxin component, Xre family
          [Escherichia coli MS 115-1]
          Length = 73

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
               R++RK+  LT +++ +  G ++S++ ELE  +S   + + +  LA  L  
Sbjct: 5  LGEKLRDLRKQRGLTLEKLADMAGLSKSYLWELENRESQRPSAEKLTALADALGV 59


>gi|289422398|ref|ZP_06424244.1| putative DNA-binding protein [Peptostreptococcus anaerobius
          653-L]
 gi|289157233|gb|EFD05852.1| putative DNA-binding protein [Peptostreptococcus anaerobius
          653-L]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +   + R+   +T K+   R+G + + +S+LE G    ++  +  +A T++  +  L 
Sbjct: 6  LGSKLADYRRSNNITIKDFSKRSGISTALLSQLERGLGNPSLSVITSIARTMNLSVSSLF 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|320007840|gb|ADW02690.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 277

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P   D     R  +    R +R+ A L+Q E+  R   + ++I   E  +    ++   
Sbjct: 3  LPKDLDPYANPRAFYGAELRRLREAAGLSQNELGERAFCSGTYIGLFEAAERRPQVEISR 62

Query: 68 ILAHTLD 74
           L   L 
Sbjct: 63 ALDALLG 69


>gi|300773943|ref|ZP_07083812.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760114|gb|EFK56941.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAH 71
               +  R++ +LTQ+++  + G  +S+IS++ET   + I +  +  +  
Sbjct: 58  GEMLKEAREQRQLTQEQLAQKVGKKRSYISKVETDYGNNIKLQTLKEIVE 107


>gi|225860372|ref|YP_002741881.1| hypothetical protein SPT_0383 [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|270292145|ref|ZP_06198360.1| conserved domain protein [Streptococcus sp. M143]
 gi|303255209|ref|ZP_07341283.1| transcriptional regulator, putative [Streptococcus pneumoniae
          BS455]
 gi|307710486|ref|ZP_07646923.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307711382|ref|ZP_07647800.1| helix-turn-helix family protein [Streptococcus mitis SK321]
 gi|322377106|ref|ZP_08051598.1| conserved domain protein [Streptococcus sp. M334]
 gi|331265735|ref|YP_004325365.1| putative transcriptional regulator [Streptococcus oralis Uo5]
 gi|225726800|gb|ACO22651.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|270279673|gb|EFA25515.1| conserved domain protein [Streptococcus sp. M143]
 gi|302597842|gb|EFL64914.1| transcriptional regulator, putative [Streptococcus pneumoniae
          BS455]
 gi|307616800|gb|EFN95982.1| helix-turn-helix family protein [Streptococcus mitis SK321]
 gi|307618749|gb|EFN97888.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|321281819|gb|EFX58827.1| conserved domain protein [Streptococcus sp. M334]
 gi|326682407|emb|CBZ00024.1| putative transcriptional regulator [Streptococcus oralis Uo5]
 gi|332202241|gb|EGJ16310.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE  ++Q E+    G ++  I+ +E  K    ++  + LA +L T L  L 
Sbjct: 2  NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59


>gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 66

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  R +R+    +Q E+  R G ++  I+ LETGK   ++     +A      +  + 
Sbjct: 3  SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60


>gi|325679169|ref|ZP_08158760.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
 gi|324109098|gb|EGC03323.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F   F+  R+E +LTQ++       +   +S  E G+++ +I  + I+A      +  LL
Sbjct: 5  FSEVFKKFRRERELTQEQAAEAFSVSTQAVSRWENGQTSPDITLLPIIAEYFGVSIETLL 64


>gi|288957911|ref|YP_003448252.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288910219|dbj|BAI71708.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 353

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           RKR      ++   +  +     R  R    ++Q+++    G     + + E G + I+ 
Sbjct: 112 RKRGRRGSPESWSVDAHV-GQRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISA 170

Query: 64  DNMIILAHTLDTP 76
             +  L   LD P
Sbjct: 171 GTLYRLGQVLDVP 183


>gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
 gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R +   TQ+ +  +    +  IS+ E  K+T +I+ +  +     T +  +L
Sbjct: 4  LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSIL 63


>gi|238917584|ref|YP_002931101.1| putative transcriptional regulator [Eubacterium eligens ATCC
          27750]
 gi|238872944|gb|ACR72654.1| putative transcriptional regulator [Eubacterium eligens ATCC
          27750]
          Length = 97

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   +  +  
Sbjct: 32 MAVTNNIREIREQRGIYQNDLAAAIGYSTKTVDRIERGDSTPSAEFMLQISKYFNMLVED 91

Query: 80 LL 81
          + 
Sbjct: 92 VF 93


>gi|218660254|ref|ZP_03516184.1| hypothetical protein RetlI_11854 [Rhizobium etli IE4771]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +R       + +R   KL   ++   TG + + +S++E G+    +  ++ +A      L
Sbjct: 97  QRYAIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGL 156

Query: 78  WKLLK 82
               K
Sbjct: 157 DHFFK 161


>gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens
          DSM 30120]
 gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens
          DSM 30120]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     R +RK+  ++ +++    G +Q   S  E G+  I++D +  ++  L+  + +
Sbjct: 8  KIVGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELGEMRIHVDTLYSISEILELDIQE 67

Query: 80 LL 81
          L+
Sbjct: 68 LM 69


>gi|254461674|ref|ZP_05075090.1| transcriptional regulator, XRE family [Rhodobacterales bacterium
          HTCC2083]
 gi|206678263|gb|EDZ42750.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          HTCC2083]
          Length = 466

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 33/63 (52%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++   +  R++R +  LTQK+   + G +  +++++E  K  I+   ++ LA      +
Sbjct: 4  QKIYAGSKLRDLRGQVSLTQKDFAAKLGVSLPYLNQMENNKRPISTTVVLALAQEFGFDV 63

Query: 78 WKL 80
           +L
Sbjct: 64 TEL 66


>gi|77165129|ref|YP_343654.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC
          19707]
 gi|254433736|ref|ZP_05047244.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27]
 gi|76883443|gb|ABA58124.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC
          19707]
 gi|207090069|gb|EDZ67340.1| hypothetical protein NOC27_667 [Nitrosococcus oceani AFC27]
          Length = 76

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
          M    N + +R  A LTQ ++       QS +S++E  ++ +I +  +  +A  LD  + 
Sbjct: 1  MSVGKNIKGLRIAAGLTQTQLAKEARINQSGLSKIEREENESITLPTLRKIAKALDCSVV 60

Query: 79 KLLK 82
           LL+
Sbjct: 61 ALLE 64


>gi|42784215|ref|NP_981462.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42740146|gb|AAS44070.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 79

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63

Query: 77 LWKLL 81
          + ++ 
Sbjct: 64 VEEIF 68


>gi|84496904|ref|ZP_00995758.1| helix-turn-helix motif protein [Janibacter sp. HTCC2649]
 gi|84383672|gb|EAP99553.1| helix-turn-helix motif protein [Janibacter sp. HTCC2649]
          Length = 115

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R+E   T +++      +  ++SE+E G    + + +  +   LD P+ 
Sbjct: 20 RHELGEVLRERRQEQGRTLRDVAAAGAVSLGYLSEVERGVKEASSELLGAICDALDIPMS 79

Query: 79 KLLK 82
           +L+
Sbjct: 80 LVLE 83


>gi|189499832|ref|YP_001959302.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides
           BS1]
 gi|189495273|gb|ACE03821.1| transcriptional regulator, XRE family [Chlorobium phaeobacteroides
           BS1]
          Length = 108

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 4   RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTIN 62
           RK  E       L   ++F       RK++ +TQ+ + N+ G  +S IS LE G K   +
Sbjct: 27  RKEYEALEPKYALIRELLFA------RKQSGMTQEAVANKIGTTKSAISRLEAGSKHAPS 80

Query: 63  IDNMIILAHTLDTPLWKLLKP 83
           I  +   A  +   L   L+P
Sbjct: 81  ITTLRKYAEAVGCDLVIKLEP 101


>gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,408]
 gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317]
 gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,408]
 gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium]
 gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317]
          Length = 153

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R +   TQ+ +  +    +  IS+ E  K+T +I+ +  +     T +  +L
Sbjct: 4  LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSIL 63


>gi|332666273|ref|YP_004449061.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332335087|gb|AEE52188.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 173

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          + E      N R +RK   L+Q+E+  + G  +  I+  E G +   + N++ ++     
Sbjct: 4  MVESTYLDKNIRFLRKRMNLSQEELACKIGLNRGNIASYENGSAEPKVCNLLRISRLFGV 63

Query: 76 PLWKLLK 82
           +  L +
Sbjct: 64 SICDLAQ 70


>gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 168

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 6  KLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|296269222|ref|YP_003651854.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296092009|gb|ADG87961.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK+  L+Q ++ +    + S++S +E+GK T     + ++A  L   L  L+
Sbjct: 8  GERIKMLRKQRGLSQAQLAH-PELSDSYVSLIESGKRTPTPAVLELIAQKLGCSLTYLI 65


>gi|302382071|ref|YP_003817894.1| XRE family transcriptional regulator [Brevundimonas subvibrioides
          ATCC 15264]
 gi|302192699|gb|ADL00271.1| transcriptional regulator, XRE family [Brevundimonas
          subvibrioides ATCC 15264]
          Length = 69

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG 57
            +  + IR EA LTQ E+ +R G ++  I+ +E G
Sbjct: 6  LGSRLKEIRTEAGLTQAELADRAGVSRKTINTVENG 41


>gi|172036813|ref|YP_001803314.1| transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171698267|gb|ACB51248.1| probable transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 532

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           +++++          E  +      + RK   L+Q+ +  + G +QSWI +LE G+
Sbjct: 462 KQRKNSRKSRSKKTPE--LSAKQILDARKRKGLSQRALAKQIGKSQSWIRDLENGR 515


>gi|159905609|ref|YP_001549271.1| XRE family transcriptional regulator [Methanococcus maripaludis
          C6]
 gi|159887102|gb|ABX02039.1| transcriptional regulator, XRE family [Methanococcus maripaludis
          C6]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 12 SDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
              + ER I +N  N +  R++ K+TQ ++   +G +QS +S LE GK  I
Sbjct: 3  DKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 54


>gi|150402616|ref|YP_001329910.1| XRE family transcriptional regulator [Methanococcus maripaludis
          C7]
 gi|150033646|gb|ABR65759.1| putative transcriptional regulator, XRE family [Methanococcus
          maripaludis C7]
          Length = 218

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 12 SDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
              + ER I +N  N +  R++ K+TQ ++   +G +QS +S LE GK  I
Sbjct: 9  DKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 60


>gi|134099568|ref|YP_001105229.1| SARP family transcriptional regulator [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133912191|emb|CAM02304.1| putative transcriptional activator of the SARP family
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 544

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%)

Query: 1   MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           +P+++R                    R +R  A LT + +  R   +QS IS++E G+  
Sbjct: 256 VPQQRRSADDQPAVPSGAPSGVAAELRRLRIAAGLTGERLSARARMSQSKISKIENGRQP 315

Query: 61  INIDNMIILAHTLDTPL 77
            +  ++  L   LD   
Sbjct: 316 ASPGDVERLLLALDASP 332


>gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus
          thuringiensis str. Al Hakam]
 gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus
          thuringiensis str. Al Hakam]
          Length = 69

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++  N     R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  +  +  
Sbjct: 3  LLLHNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITD 62

Query: 80 LL 81
          + 
Sbjct: 63 VF 64


>gi|49082594|gb|AAT50697.1| PA2312 [synthetic construct]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
              D ++ +R    +N   +R +  L+   +   +G +++ ++++E+G+S  +I  +  
Sbjct: 2  HTEPDDLIGQR--VAHNLPRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 59

Query: 69 LAHTLDTPLWKLL 81
          +A  L   +   L
Sbjct: 60 IAQGLKVSVAAFL 72


>gi|163938382|ref|YP_001643266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|229056228|ref|ZP_04195651.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603]
 gi|163860579|gb|ABY41638.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
 gi|228721115|gb|EEL72650.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R    ++Q  + ++   ++  I+ +E  K   ++     LA  L T + KL 
Sbjct: 3  NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60


>gi|329732814|gb|EGG69161.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus
          subsp. aureus 21193]
          Length = 77

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R+    +Q+E  N    ++  +S+ E+ K+  ++D +I ++      L  L+
Sbjct: 3  LAEAIKEQRELKGWSQEESANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDHLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|327254477|gb|EGE66099.1| helix-turn-helix family protein [Escherichia coli STEC_7v]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F          A ++Q ++ +  G +Q  I ++ +GK+  +   M+ LA+ L      
Sbjct: 4  KTFAERLNAAMSLAGVSQSQLADMVGISQPAIQKMSSGKTNGS-RKMVELANALKVRPEW 62

Query: 80 L 80
          L
Sbjct: 63 L 63


>gi|325261432|ref|ZP_08128170.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
 gi|324032886|gb|EGB94163.1| toxin-antitoxin system, antitoxin component, Xre family
          [Clostridium sp. D5]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++     ++R +  LTQK+I +  G  +      E G  TI ID +I LA    T 
Sbjct: 1  MYFKRLEDLRVDHDLTQKQIADHLGIQREVYRRYEKGTHTIPIDYLIKLADLYKTS 56


>gi|307276550|ref|ZP_07557668.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306506660|gb|EFM75812.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
          Length = 418

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 29/59 (49%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             +     + R  R+E   TQ+ +  + G ++S +S++E G   ++ + + ++  +L 
Sbjct: 3  QVNQHDLGESIRVSREERGWTQRYLAEKVGISRSLLSKVEKGTRQLSEEKLNLILDSLQ 61


>gi|302327864|gb|ADL27065.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
          Length = 75

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           R     + + +R     TQ+++ ++ G  +  +S +E GK  I       LA+ L T  
Sbjct: 11 ARSTPAESLKLLRTTFGYTQQQLADKAGITKQQVSAMERGKEPIGRKMAHRLANALGTSY 70

Query: 78 WKLL 81
            L 
Sbjct: 71 KNLF 74


>gi|295093800|emb|CBK82891.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          D +  +   F    +  RK   +++ ++ +    A  +I+ +E      ++  +  L   
Sbjct: 4  DKVKYDFKAFRQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILYKLVTL 63

Query: 73 LDTPLWKLLKP 83
          LD  + +   P
Sbjct: 64 LDVSVDQFFFP 74


>gi|261823599|ref|YP_003261705.1| XRE family transcriptional regulator [Pectobacterium wasabiae
          WPP163]
 gi|261607612|gb|ACX90098.1| transcriptional regulator, XRE family [Pectobacterium wasabiae
          WPP163]
          Length = 108

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68
          +   + R IF    ++ R    L+QK +    G     A + I+  E G    +I+    
Sbjct: 2  NTRQQHRDIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVYEASIETAQQ 61

Query: 69 LAHTLDTPL 77
          LA  LD PL
Sbjct: 62 LAEALDVPL 70


>gi|212709444|ref|ZP_03317572.1| hypothetical protein PROVALCAL_00484 [Providencia alcalifaciens
          DSM 30120]
 gi|212687959|gb|EEB47487.1| hypothetical protein PROVALCAL_00484 [Providencia alcalifaciens
          DSM 30120]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           R IRKE  ++  E+  +   +Q  +S  E G +  ++D +  ++  LD P  +++K
Sbjct: 26 IREIRKENGISAHELAKKINISQQQMSRYELGITKFSLDMLFNISVALDIPFERIIK 82


>gi|254428930|ref|ZP_05042637.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881]
 gi|196195099|gb|EDX90058.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R    LTQ+++ +     +S IS  E G+ +     +  L   L   L  
Sbjct: 11 MSFPERLKAARLALGLTQEQLGDELHVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDH 70

Query: 80 LL 81
          L+
Sbjct: 71 LI 72


>gi|163816219|ref|ZP_02207586.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC
          27759]
 gi|158448414|gb|EDP25409.1| hypothetical protein COPEUT_02407 [Coprococcus eutactus ATCC
          27759]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +        R  RKE K TQ  I   TGF+ S+IS+LE GK+T  I   I + + L  
Sbjct: 5  DSKSLGEAIRIRRKELKYTQAYIAEFTGFSVSFISDLERGKATAEIGKAITIINLLGM 62


>gi|149909139|ref|ZP_01897797.1| hypothetical protein PE36_17760 [Moritella sp. PE36]
 gi|149807890|gb|EDM67835.1| hypothetical protein PE36_17760 [Moritella sp. PE36]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE +++Q ++       +S++  +E G+  I ++ +  +A  L+     LL
Sbjct: 8  VGLKIKVRRKEMRVSQDKLALLADIDRSYVGRIERGEVNITLEKLYQIAEVLECDAKGLL 67


>gi|21219736|ref|NP_625515.1| DNA-binding protein [Streptomyces coelicolor A3(2)]
 gi|9716113|emb|CAC01451.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)]
          Length = 489

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R++R+ A LTQ ++  R G+  S +S LE G     +  +  L   L+T
Sbjct: 31 FGRQLRSLRRAAGLTQLQLGLRVGYHHSVVSRLEAGLREPPVGLVRRLDAVLET 84


>gi|328956460|ref|YP_004373846.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4]
 gi|328672784|gb|AEB28830.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4]
          Length = 183

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   ++ +  R    LTQ++I  +    +  +S  E  K+  NI  +  L++     + +
Sbjct: 1  MSLGHSLKKARAATNLTQEDIAKKLYVTRQTVSRWEQNKTLPNIFVLQELSNLYGLSIDE 60

Query: 80 LL 81
          L+
Sbjct: 61 LI 62


>gi|329117364|ref|ZP_08246081.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907769|gb|EGE54683.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R  A L+Q+++   +   QS I+ +E G    +I+ M  +A  ++  L
Sbjct: 38 KARSNAGLSQRQLAELSHVPQSTIARIERG-HNTSIETMSKIAVAVNQEL 86


>gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N  ++ RK   LTQK++  +  G +QS  S+LE+GKS       + LAH    
Sbjct: 5  NRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRA-VELAHLFGV 56


>gi|326564808|gb|EGE15019.1| putative phage represso [Moraxella catarrhalis 103P14B1]
          Length = 109

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRT-GFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N  ++ RK   LTQK++  +  G +QS  S+LE+GKS       + LAH    
Sbjct: 5  NRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRA-VELAHLFGV 56


>gi|323466842|gb|ADX70529.1| Putative uncharacterized protein [Lactobacillus helveticus H10]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R  A LTQ E+      ++S+ S++E G   I+ D ++ +         +  
Sbjct: 4  GKLLRETRLVAGLTQTEMAAGA-ISESFYSKVERGVHNIDADTLVEVLKANHIDPVQFF 61


>gi|264676235|ref|YP_003276141.1| XRE family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262206747|gb|ACY30845.1| transcriptional regulator, XRE family with [Comamonas
          testosteroni CNB-2]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RN+R    LT++ + +    ++  ++ LE G   ++I  +  +AH L   + +LL
Sbjct: 26 LGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQIAHALQCSMAELL 85


>gi|311744183|ref|ZP_07717988.1| XRE family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
 gi|311312538|gb|EFQ82450.1| XRE family transcriptional regulator [Aeromicrobium marinum DSM
          15272]
          Length = 100

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R +  LT +++  R   +  +ISE+E G+   + + +  LA  LD PL 
Sbjct: 5  RQLVGEVLRARRLDEGLTLRDVSARARVSLGYISEVERGQKEPSSELLAALAAALDVPLS 64

Query: 79 KLL 81
          K+L
Sbjct: 65 KVL 67


>gi|320009363|gb|ADW04213.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP  K+      D     R +     R+ R+ A L+Q+++      + S+I +LE G   
Sbjct: 1  MPGPKK-----LDPSASPRALLGAELRHRRETAGLSQEDLGAPLFVSGSFIGQLEAGTRR 55

Query: 61 INIDNMIILAHTLD 74
          +  D    L   L 
Sbjct: 56 MQADQAARLDEVLG 69


>gi|271962441|ref|YP_003336637.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505616|gb|ACZ83894.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 99

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R  R++  LTQ E+  RTG  Q  ++  E G +   I  +  LA  L+  L 
Sbjct: 30 RFELGEAVRLRREQLGLTQSELAERTGLKQPAVARFEAGGTMPTIPMLERLAEALEMRLS 89

Query: 79 KLLKP 83
             +P
Sbjct: 90 VQFQP 94


>gi|228988281|ref|ZP_04148376.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229158633|ref|ZP_04286691.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342]
 gi|229169747|ref|ZP_04297447.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621]
 gi|229175726|ref|ZP_04303232.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3]
 gi|228607677|gb|EEK64993.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3]
 gi|228613786|gb|EEK70911.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621]
 gi|228624617|gb|EEK81386.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342]
 gi|228771453|gb|EEM19924.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 79

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +AH  + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|196038079|ref|ZP_03105389.1| DNA-binding protein [Bacillus cereus NVH0597-99]
 gi|196031349|gb|EDX69946.1| DNA-binding protein [Bacillus cereus NVH0597-99]
          Length = 67

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRTKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|167761093|ref|ZP_02433220.1| hypothetical protein CLOSCI_03491 [Clostridium scindens ATCC
          35704]
 gi|167661327|gb|EDS05457.1| hypothetical protein CLOSCI_03491 [Clostridium scindens ATCC
          35704]
          Length = 374

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N   +R+E ++TQ+E+ N  G  ++ +S+ ET +S  +I  + ++A      + +LL
Sbjct: 6  LAENLIRLRREKEVTQEEVANFIGVTKASVSKWETKQSLPDILLLPVIASYYGVTVDELL 65


>gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RKE   TQ+++ N    +   +S+ E G    ++  +  L+  L   L ++L
Sbjct: 6  VGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENGFGCPDVSLLGELSIVLGVDLEQML 65

Query: 82 K 82
          K
Sbjct: 66 K 66


>gi|153822286|ref|ZP_01974953.1| membrane associated protein containing xre-family DNA-binding HTH
          domain [Vibrio cholerae B33]
 gi|16197752|gb|AAK95990.1| unknown [Vibrio cholerae O1 biovar El Tor]
 gi|126520182|gb|EAZ77405.1| membrane associated protein containing xre-family DNA-binding HTH
          domain [Vibrio cholerae B33]
 gi|223972392|dbj|BAH23423.1| membrane associated protein containing xre-family DNA-binding HTH
          domain [Vibrio cholerae O1 biovar El tor]
 gi|259156102|gb|ACV96050.1| membrane associated protein containing xre-family DNA-binding HTH
          domain [Providencia alcalifaciens Ban1]
 gi|259156265|gb|ACV96212.1| membrane associated protein containing xre-family DNA-binding HTH
          domain [Vibrio cholerae Ban5]
 gi|259156445|gb|ACV96390.1| membrane associated protein containing xre-family DNA-binding HTH
          domain [Vibrio cholerae Ind5]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + +R+    +Q+++   +G +   I  +E+G    +I+++  LA   +  + KLL+
Sbjct: 2  IKKLRERKNWSQEQLATMSGLSVRTIQRIESGNK-ASIESLKSLASVFEVDISKLLE 57


>gi|72162305|ref|YP_289962.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71916037|gb|AAZ55939.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 128

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R IR  A L+ + +    G+  S +S+LE G+ T +++++   A     P
Sbjct: 27 LGARLREIRVAAGLSGRALAQALGWHPSKVSKLELGRQTASVEDLKAWAGACGAP 81


>gi|49183405|ref|YP_026657.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49479896|ref|YP_034718.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|52144853|ref|YP_081974.1| PbsX family transcriptional regulator [Bacillus cereus E33L]
 gi|65317820|ref|ZP_00390779.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|222094186|ref|YP_002528243.1| transcriptional regulator, pbsx family [Bacillus cereus Q1]
 gi|228913138|ref|ZP_04076777.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228925643|ref|ZP_04088732.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228931891|ref|ZP_04094787.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228944196|ref|ZP_04106575.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229089510|ref|ZP_04220779.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42]
 gi|229120049|ref|ZP_04249304.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201]
 gi|229137252|ref|ZP_04265869.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26]
 gi|229182776|ref|ZP_04310016.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1]
 gi|229194768|ref|ZP_04321557.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293]
 gi|49177332|gb|AAT52708.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|49331452|gb|AAT62098.1| transcriptional regulator, PBSX family [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|51978322|gb|AAU19872.1| transcriptional regulator, PBSX family [Bacillus cereus E33L]
 gi|221238241|gb|ACM10951.1| transcriptional regulator, PBSX family [Bacillus cereus Q1]
 gi|228588711|gb|EEK46740.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293]
 gi|228600749|gb|EEK58329.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1]
 gi|228646247|gb|EEL02464.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26]
 gi|228663515|gb|EEL19100.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201]
 gi|228693817|gb|EEL47511.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42]
 gi|228815585|gb|EEM61827.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228827871|gb|EEM73609.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228834121|gb|EEM79669.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228846543|gb|EEM91556.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 83

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 14 QVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73

Query: 76 PLWKLL 81
           + KL 
Sbjct: 74 TVDKLF 79


>gi|328956456|ref|YP_004373842.1| transcriptional regulator [Carnobacterium sp. 17-4]
 gi|328672780|gb|AEB28826.1| transcriptional regulator [Carnobacterium sp. 17-4]
          Length = 65

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +  L+Q+++ +     +  IS +E G     I+    +   LD  L  L 
Sbjct: 6  RLKAARAKNDLSQQQLADAVNVTRQTISAIERGDYNPTINLCREICKKLDLTLNDLF 62


>gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IRK  ++T  E+  R       +S LE G    +   +  +A  L  P+ +L 
Sbjct: 4  GEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGYSDTLIQKIAEALGVPVAELF 62


>gi|308176372|ref|YP_003915778.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743835|emb|CBT74807.1| putative transcriptional regulator [Arthrobacter arilaitensis
          Re117]
          Length = 187

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R+  ++T  ++   +G  + ++S +E   ++ ++  ++ L   L   +  L +
Sbjct: 16 GARLRGVRQTQRMTIDQVAELSGLTKGFLSRVERDLTSPSVSTLLRLCEVLSIEVGTLFE 75


>gi|306824544|ref|ZP_07457890.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
 gi|306830126|ref|ZP_07463310.1| XRE family transcriptional regulator [Streptococcus mitis ATCC
          6249]
 gi|304427652|gb|EFM30748.1| XRE family transcriptional regulator [Streptococcus mitis ATCC
          6249]
 gi|304433331|gb|EFM36301.1| XRE family transcriptional regulator [Streptococcus sp. oral
          taxon 071 str. 73H25AP]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE  ++Q ++    G ++  I+ +E  K    ++  + LA +L T L  L 
Sbjct: 2  NRVKEFRKELGISQLDLAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59


>gi|229156920|ref|ZP_04285001.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342]
 gi|228626410|gb|EEK83156.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342]
          Length = 374

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65


>gi|269124926|ref|YP_003298296.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309884|gb|ACY96258.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 145

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R  R+ AK++ +++ + +G +  ++S++E G    + + +  +A  L      L
Sbjct: 10 GEYIREQRQRAKISLRQLADVSGISNPYLSQIERGLRKPSAEILQQIAKGLRISAEAL 67


>gi|196037572|ref|ZP_03104883.1| conserved domain protein [Bacillus cereus NVH0597-99]
 gi|218235301|ref|YP_002365690.1| hypothetical protein BCB4264_A0957 [Bacillus cereus B4264]
 gi|296501634|ref|YP_003663334.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|296506639|ref|YP_003667873.1| transcriptional regulator [Bacillus thuringiensis BMB171]
 gi|196031814|gb|EDX70410.1| conserved domain protein [Bacillus cereus NVH0597-99]
 gi|218163258|gb|ACK63250.1| conserved domain protein [Bacillus cereus B4264]
 gi|296322686|gb|ADH05614.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|296327226|gb|ADH10153.1| Transcriptional regulator [Bacillus thuringiensis BMB171]
          Length = 65

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  +  R E  LTQ+E+       +  I  +E  K   ++   I +A +LD  L +L 
Sbjct: 4  SKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDELF 61


>gi|153954990|ref|YP_001395755.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855434|ref|YP_002472556.1| hypothetical protein CKR_2091 [Clostridium kluyveri NBRC 12016]
 gi|146347848|gb|EDK34384.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219569158|dbj|BAH07142.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 130

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 30/69 (43%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
             +  +       R  R++  LT++        +  +I +LE G+  +++  ++ +A++
Sbjct: 3  KINIINKQEMGIRIRENREKLDLTRERFAEIVDLSALYIGQLERGERQMSLTALVKIANS 62

Query: 73 LDTPLWKLL 81
          L      L+
Sbjct: 63 LCVTTDYLI 71


>gi|88705884|ref|ZP_01103593.1| transcription regulator protein [Congregibacter litoralis KT71]
 gi|88699955|gb|EAQ97065.1| transcription regulator protein [Congregibacter litoralis KT71]
          Length = 95

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+Q+   + +  +++++S LE    +  +  +  L   ++     LL
Sbjct: 7  LARALKAVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLSKLAELCEVMEVHPLTLL 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|308270263|emb|CBX26875.1| hypothetical protein N47_A09040 [uncultured Desulfobacterium sp.]
          Length = 114

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R+  KLTQ E+  + G  QS ++ LE          ++ LA  +   + +LL
Sbjct: 58  IKAWREYLKLTQSELAAKAGMKQSALARLENNTVNPRKSTLLNLAKAMGISVEQLL 113


>gi|299533429|ref|ZP_07046811.1| anaerobic benzoate catabolism transcriptional regulator
          [Comamonas testosteroni S44]
 gi|298718635|gb|EFI59610.1| anaerobic benzoate catabolism transcriptional regulator
          [Comamonas testosteroni S44]
          Length = 295

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               RN+R    LT++ + +    ++  ++ LE G   ++I  +  +AH L   + +LL
Sbjct: 21 LGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQIAHALQCSMAELL 80


>gi|294497869|ref|YP_003561569.1| putative transcriptional regulator SinR [Bacillus megaterium QM
          B1551]
 gi|294347806|gb|ADE68135.1| probable transcriptional regulator SinR [Bacillus megaterium QM
          B1551]
          Length = 111

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     +N+R +   +   +      ++S++S LE G  +  ++  +  +A +L T + +
Sbjct: 1  MIGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNNNPSLQMLDKIASSLHTTIDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 177

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +     R  R+    +Q ++   +G     I + E G      D +  +A  L 
Sbjct: 1  MVGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALG 54


>gi|206972991|ref|ZP_03233913.1| dna-binding protein [Bacillus cereus AH1134]
 gi|229194134|ref|ZP_04320999.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
 gi|206731875|gb|EDZ49075.1| dna-binding protein [Bacillus cereus AH1134]
 gi|228589350|gb|EEK47304.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK A LT K +        S +S++E G +  ++  + +++  L+  L+   
Sbjct: 7  GEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIALFNFF 65


>gi|167032792|ref|YP_001668023.1| XRE family transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859280|gb|ABY97687.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83
          +RK   LT  E+  R   +  ++S++E G S   + ++  ++  L       + L KP
Sbjct: 17 LRKFKNLTLGELAERINRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74


>gi|115375505|ref|ZP_01462764.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1]
 gi|310818115|ref|YP_003950473.1| lambda repressor-like, DNA-binding protein [Stigmatella
          aurantiaca DW4/3-1]
 gi|115367460|gb|EAU66436.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1]
 gi|309391187|gb|ADO68646.1| Lambda repressor-like, DNA-binding protein [Stigmatella
          aurantiaca DW4/3-1]
          Length = 125

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R  A LTQ ++  R G A      +E GK   +I  ++ L   L +   +L+
Sbjct: 9  VGEASRQARMRAGLTQADVAERIGVATEVYGRMERGKMLPSISTLLRLCVVLRSGPDELM 68


>gi|58696656|ref|ZP_00372210.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila simulans]
 gi|58699194|ref|ZP_00374006.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|225630362|ref|YP_002727153.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|225630756|ref|YP_002727547.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|58534290|gb|EAL58477.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|58537180|gb|EAL60282.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila simulans]
 gi|225592343|gb|ACN95362.1| transcriptional regulator, putative [Wolbachia sp. wRi]
 gi|225592737|gb|ACN95756.1| transcriptional regulator, putative [Wolbachia sp. wRi]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ R E   TQK++  + G     I + E G   I+I+ +  +   L   +  L+
Sbjct: 13 VGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72



 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G++ + +D +  +A  L   +  LL
Sbjct: 165 GKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 223


>gi|332523396|ref|ZP_08399648.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332314660|gb|EGJ27645.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 113

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R    LTQ+++  +     +++ +LE   + + +  +  +   L+    +  
Sbjct: 12 KRIRLLRLNKGLTQEQLEEKADLGTNYVYKLENQSTNVKVKTLEKVMKALEVDFEEFF 69


>gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183]
 gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175]
 gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183]
 gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK   LTQ ++  + G +   IS+ E+G ++   +N+  LA  L      
Sbjct: 2  KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61

Query: 80 LL 81
          L+
Sbjct: 62 LM 63


>gi|270284600|ref|ZP_05966400.2| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium gallicum DSM 20093]
 gi|270276519|gb|EFA22373.1| toxin-antitoxin system, antitoxin component, Xre family
          [Bifidobacterium gallicum DSM 20093]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 28/47 (59%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           R+EA L+Q+E+  R+G +++ ++ +E G+    ++ +  LA  +  
Sbjct: 17 AREEAHLSQEELAKRSGVSRATVNRIERGRIMPLLNTLEKLAKAMGK 63


>gi|169343406|ref|ZP_02864410.1| regulator SinR [Clostridium perfringens C str. JGS1495]
 gi|169298492|gb|EDS80578.1| regulator SinR [Clostridium perfringens C str. JGS1495]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82
          R++  +++ ++    G + ++I++LE G KS  +++  I +A+ L+ P+   L+
Sbjct: 11 REKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITVFLE 64


>gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195]
 gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195]
 gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK   LTQ ++  + G +   IS+ E+G ++   +N+  LA  L      
Sbjct: 2  KTLGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61

Query: 80 LL 81
          L+
Sbjct: 62 LM 63


>gi|42520475|ref|NP_966390.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|42410214|gb|AAS14324.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ R E   TQK++  + G     I + E G   I+I+ +  +   L   +  L+
Sbjct: 13 VGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSISITDLI 72



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  IS  E G++ + +D +  +A  L   +  LL
Sbjct: 165 GKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSINITDLL 223


>gi|89096020|ref|ZP_01168913.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
          B-14911]
 gi|89088874|gb|EAR67982.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
          B-14911]
          Length = 192

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           IRK  KLTQ+ +  +    +++ +++E+G    + +    +A  L+
Sbjct: 12 KIRKARKLTQETVATKAFIDRAYYAQIESGVRNPSEEIRQKIAQILN 58


>gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937]
 gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R+ R+    +  ++  +   +++ I ++E G+S+   + +  L+      +  LL
Sbjct: 12 AARIRSERENRGWSLSDLAEKASVSRAMIHKIERGESSPTANLLGKLSGAFGLSMSTLL 70


>gi|302387998|ref|YP_003823820.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302198626|gb|ADL06197.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ +     + +RK    TQ+ +          IS++E G  + + ++MI+ +      L
Sbjct: 4  DQHVCGARIQELRKSKGYTQEALAEAIDIDAKRISKIERGVISASYNDMILFSEFFGVTL 63

Query: 78 WKLL 81
            L+
Sbjct: 64 DYLI 67


>gi|291008898|ref|ZP_06566871.1| regulator [Saccharopolyspora erythraea NRRL 2338]
          Length = 456

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 8  EPHLSDA--ILRERMIFVNN-----FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           P   D       R    N      ++ +R+   ++Q++I   TG +QS +SE+  G+  
Sbjct: 9  SPVTPDVWNERPMRDALANRNISEVYKQLRR-HGVSQRQIAASTGQSQSEVSEILKGRQV 67

Query: 61 INIDNMIILAHTLDTP 76
          +  D +  +A  L  P
Sbjct: 68 MAYDVLARIADGLGIP 83


>gi|259417621|ref|ZP_05741540.1| conserved domain protein [Silicibacter sp. TrichCH4B]
 gi|259346527|gb|EEW58341.1| conserved domain protein [Silicibacter sp. TrichCH4B]
          Length = 77

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          NN + +R+ A  +Q E+  R   ++  ++ LE G+   ++     +A   +  + ++ +P
Sbjct: 16 NNIQELRQIAGWSQAELAKRLNVSRQTVNALERGRYDPSLPLAFAIAQLFERQIEQVFQP 75


>gi|260856429|ref|YP_003230320.1| putative phage repressor protein CI [Escherichia coli O26:H11
          str. 11368]
 gi|257755078|dbj|BAI26580.1| predicted phage repressor protein CI [Escherichia coli O26:H11
          str. 11368]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F          A ++Q ++ +  G +Q  I ++ +GK+  +   M+ LA+ L      
Sbjct: 2  KTFAERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGS-RKMVELANALKVRPEW 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
 gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio
          peptidovorans DSM 11002]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          MI  N+ + +RKE   TQ+++ +R G  ++ I + E  + +    N+I LA  L+  
Sbjct: 1  MIRGNDLKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYSPVGQNLISLAKALNVS 57


>gi|226949688|ref|YP_002804779.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226842029|gb|ACO84695.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 82

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+F +  + +R++  LTQ +I N     +S ++  E G    +I  ++ +A   +  L  
Sbjct: 1  MVFKDRLKGLREDRDLTQDQIANILKITRSAVANYENGIREPDISLLVKIADYFNISLDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|225020807|ref|ZP_03709999.1| hypothetical protein CORMATOL_00815 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224946405|gb|EEG27614.1| hypothetical protein CORMATOL_00815 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 27/51 (52%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +  R+ A + Q ++ ++TG +++ I+ +ETG++      + I+A     
Sbjct: 19 RVKLAREYAGMQQHDLADKTGLSRTSIANMETGRTKPRKKTITIIASATGV 69


>gi|126669133|ref|ZP_01740061.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17]
 gi|126626403|gb|EAZ97072.1| hypothetical protein MELB17_05544 [Marinobacter sp. ELB17]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L+E    ++    +R +A LTQ+++  + G ++S IS LE G+   +   +   A    
Sbjct: 22 ALQEEFNLIDQLITMRTKAGLTQEDLAKKLGTSKSNISRLERGRGNPSWGTLSKYAAACG 81


>gi|126643291|ref|YP_001086275.1| putative transcriptional regulator [Acinetobacter baumannii ATCC
          17978]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 38 KEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           E+  R G A+S +S+LE G+   +I+ +  L   L+ P  +L++
Sbjct: 2  AEVARRAGVAKSTLSQLEAGQGNPSIETLWALCVALNIPFARLME 46


>gi|37525095|ref|NP_928439.1| hypothetical protein plu1127 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37525319|ref|NP_928663.1| hypothetical protein plu1363 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37527554|ref|NP_930898.1| hypothetical protein plu3690 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37527562|ref|NP_930906.1| hypothetical protein plu3698 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784521|emb|CAE13421.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784746|emb|CAE13656.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786989|emb|CAE16063.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786997|emb|CAE16071.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F +     RKE   TQ+++ ++ G   S     E G S   ID    +A  L+     
Sbjct: 1  MSFSDKLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADM 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|117922490|ref|YP_871682.1| XRE family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614822|gb|ABK50276.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3]
          Length = 510

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
            +++R+        RN+RK   LT +++  R          + S++S +E GK   + +
Sbjct: 4  DQSLMRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAE 63

Query: 65 NMIILAHTLDT 75
           + ++A     
Sbjct: 64 MLAVIATVFQK 74


>gi|292557970|gb|ADE30971.1| DNA-binding protein [Streptococcus suis GZ1]
          Length = 179

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +    +RKE KLTQ E+  + G     +S  ETG     ++ +  L+      + ++L
Sbjct: 7  GSFLAELRKEQKLTQAELGEKLGVTNKTVSRWETGIYMPPVEILEELSRLYGLTINEIL 65


>gi|261208044|ref|ZP_05922719.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
 gi|289565525|ref|ZP_06445973.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          D344SRF]
 gi|260077628|gb|EEW65344.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          TC 6]
 gi|289162723|gb|EFD10575.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          D344SRF]
          Length = 87

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N    RKE  L+Q E+  +    Q  +S  +TG++      M +L+  L  P+ +L 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 78


>gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 175

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           L +        R  R  AK++ +++    G +  ++S++E G    + + +  +A  L 
Sbjct: 2  ALPKVGSIGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERGLRKPSAEILNQIAKGLH 61

Query: 75 TP 76
            
Sbjct: 62 IS 63


>gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
 gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar
          monterrey BGSC 4AJ1]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+  LTQK++  + G +Q  I   E+ +     D +  LA         L
Sbjct: 1  MIGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSISADYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|225859745|ref|YP_002741255.1| transcriptional activator [Streptococcus pneumoniae 70585]
 gi|225721901|gb|ACO17755.1| transcriptional activator [Streptococcus pneumoniae 70585]
          Length = 299

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|254515458|ref|ZP_05127518.1| conserved domain protein [gamma proteobacterium NOR5-3]
 gi|219675180|gb|EED31546.1| conserved domain protein [gamma proteobacterium NOR5-3]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                  RK   ++  +  +  G  +  IS  ETGK       +  +A  L+ P
Sbjct: 8  VGERLTQARKARGVSAGDFADMVGLDRVTISRYETGKMDPKPSTIYKMAEALNFP 62


>gi|171914342|ref|ZP_02929812.1| putative phage repressor [Verrucomicrobium spinosum DSM 4136]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          F    + +R    LTQ++   +   +  ++ +LE GK   + +++++L   ++  
Sbjct: 3  FSERLKALRTRLGLTQRDFAEKLKLSVGYVYQLEAGKRAPS-ESLLVLLDLIEKE 56


>gi|169334235|ref|ZP_02861428.1| hypothetical protein ANASTE_00633 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169258952|gb|EDS72918.1| hypothetical protein ANASTE_00633 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 75

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RK+  L Q+    +   ++  IS +E GK   +++    +A   D  + ++ 
Sbjct: 6  NKVEELRKKIGLNQENFAKQLSVSRQTISSIENGKYNPSLELAFEIADFFDKRIEEVF 63


>gi|167771912|ref|ZP_02443965.1| hypothetical protein ANACOL_03285 [Anaerotruncus colihominis DSM
          17241]
 gi|167665710|gb|EDS09840.1| hypothetical protein ANACOL_03285 [Anaerotruncus colihominis DSM
          17241]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWK 79
          I     R  RK+  LTQ +  N    ++S++S  E G         +  +A ++ T + +
Sbjct: 12 IVGKKIRLYRKKVGLTQSQFANECFMSESYVSRFERGLVDNPTQATLEHIATSIGTTVPE 71

Query: 80 LLK 82
          L++
Sbjct: 72 LIR 74


>gi|149012422|ref|ZP_01833453.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP19-BS75]
 gi|147763478|gb|EDK70414.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP19-BS75]
          Length = 299

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|172061648|ref|YP_001809300.1| XRE family transcriptional regulator [Burkholderia ambifaria
          MC40-6]
 gi|171994165|gb|ACB65084.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MC40-6]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|159901080|ref|YP_001547327.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159894119|gb|ABX07199.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus
          ATCC 23779]
          Length = 143

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F      +R     TQ+ + +R   ++  IS  E G +T +   +I+LA        +
Sbjct: 3  ESFGQRLGRLRALHGWTQQALADRLALSRVAISHFEMGLATPSERTVILLAGLFRLEPHE 62

Query: 80 LL 81
          L+
Sbjct: 63 LV 64


>gi|26988901|ref|NP_744326.1| transcriptional regulator, putative [Pseudomonas putida KT2440]
 gi|24983711|gb|AAN67790.1|AE016410_6 transcriptional regulator, putative [Pseudomonas putida KT2440]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83
          +RK   LT  E+  R   +  ++S++E G S   + ++  ++  L       + L KP
Sbjct: 17 LRKFKNLTLGELAERIDRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74


>gi|9633025|ref|NP_050133.1| hypothetical protein phiadhp25 [Lactobacillus phage phiadh]
 gi|5730282|emb|CAB52503.1| hypothetical protein [Lactobacillus phage phiadh]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          N  +N+R    ++Q E+ N+   +   IS  E+G      +    LA   +  +  L
Sbjct: 2  NRIKNLRIANNISQAELGNKVNASNQAISAYESGFRNPKPETWQALADFFNVSVPYL 58


>gi|113972178|ref|YP_735971.1| XRE family transcriptional regulator [Shewanella sp. MR-4]
 gi|113886862|gb|ABI40914.1| transcriptional regulator, XRE family [Shewanella sp. MR-4]
          Length = 510

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
            +++R+        RN+RK   LT +++  R          + S++S +E GK   + +
Sbjct: 4  DQSLMRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAE 63

Query: 65 NMIILAHTLDT 75
           + ++A     
Sbjct: 64 MLAVIATVFQK 74


>gi|107023625|ref|YP_621952.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
          1054]
 gi|116690710|ref|YP_836333.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          HI2424]
 gi|170734053|ref|YP_001766000.1| XRE family transcriptional regulator [Burkholderia cenocepacia
          MC0-3]
 gi|105893814|gb|ABF76979.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          AU 1054]
 gi|116648799|gb|ABK09440.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          HI2424]
 gi|169817295|gb|ACA91878.1| transcriptional regulator, XRE family [Burkholderia cenocepacia
          MC0-3]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|330960122|gb|EGH60382.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 116

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+ F +  + +R+ + + Q +     G +QS IS LE G+S++ ++ +  +A  L+    
Sbjct: 3  RIAFASALQFMRRHSSVLQADFE--GGVSQSHISRLERGESSVTLERLEEIAAHLNVHPL 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLI 63


>gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +++        RK+  +TQ+++  + G +   IS+ ETGK   +   +  L   L+  + 
Sbjct: 3  QLVIGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEITVA 62

Query: 79 KLL 81
          +L 
Sbjct: 63 ELF 65


>gi|329117294|ref|ZP_08246011.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907699|gb|EGE54613.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          + + IL+E        R +R E  +TQ+++  +     +++ +LE   + I +  +  + 
Sbjct: 1  MDNKILQE--YISKRIRLLRLERGMTQEQLEEKADLGTNYVYKLENQSTNIKVKTLEKVM 58

Query: 71 HTLDT 75
            L+ 
Sbjct: 59 KALEV 63


>gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK150]
          Length = 94

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR++   +Q +I    G  +  IS  E  K+ ++  ++I LA      L +L
Sbjct: 1  MLGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60


>gi|319936560|ref|ZP_08010974.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1]
 gi|319808358|gb|EFW04918.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1]
          Length = 110

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
               +RKE  L+Q+++  +   ++  +S+ E  +S  +I N++ ++         LLK
Sbjct: 5  EKLLQLRKERGLSQQQLAEQLDVSRQSVSKWELNESIPDIQNIVAMSELFHVSTDYLLK 63


>gi|293394371|ref|ZP_06638671.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
 gi|291423349|gb|EFE96578.1| cro/CI family transcriptional regulator [Serratia odorifera DSM
          4582]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RK  KL+  E+  R G ++  + E+E G +  +I  +  +A  L   +  ++
Sbjct: 30 RKGQKLSLDELARRAGVSKGMLVEIEKGSANPSIAILCKIAAALGLSVADIV 81


>gi|312195300|ref|YP_004015361.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
 gi|311226636|gb|ADP79491.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R+ R+  +L+Q E+ N+   +   +S +ETG+S    + ++ L+  LD PL +
Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMILRLSERLDVPLRE 68


>gi|257456419|ref|ZP_05621615.1| helix-turn-helix domain protein [Treponema vincentii ATCC 35580]
 gi|257446079|gb|EEV21126.1| helix-turn-helix domain protein [Treponema vincentii ATCC 35580]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +R    N  R  R   K TQ ++  R   ++ +IS +ETG+  I+     ILA   + 
Sbjct: 57  KRQTPANTLRFYRNLHKFTQAQLAERLHTSRQFISNMETGQKPISRKTANILAEIFNI 114


>gi|251778460|ref|ZP_04821380.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243082775|gb|EES48665.1| helix-turn-helix domain protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 432

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++  +       IS +E+G+S  ++D +  LA TL+  +
Sbjct: 2  EILSLGEKIKTRRKELNMTLKDLA-KNRITPGQISLIESGRSNPSMDLLEYLAATLNISI 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EHLME 65


>gi|299529959|ref|ZP_07043386.1| transcriptional regulator, XRE family protein [Comamonas
          testosteroni S44]
 gi|298721939|gb|EFI62869.1| transcriptional regulator, XRE family protein [Comamonas
          testosteroni S44]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              RK A++TQ ++  R G ++  +   ETG        +  +A  L+  L
Sbjct: 9  LAQARKAARITQADLAERAGLSRMAVQRTETGDVDPRFSTLQEMARVLNMEL 60


>gi|291517925|emb|CBK73146.1| Predicted transcription factor, homolog of eukaryotic MBF1
          [Butyrivibrio fibrisolvens 16/4]
          Length = 97

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +N R     TQKEI N+ G     +S+ E GKS  +I  +  ++  L   + +L+
Sbjct: 7  GKLIKNARLSKGYTQKEIANKLGVTDKAVSKWECGKSFPDITMIESISRELGISVNQLV 65


>gi|254293850|ref|YP_003059873.1| XRE family transcriptional regulator [Hirschia baltica ATCC
          49814]
 gi|254042381|gb|ACT59176.1| transcriptional regulator, XRE family [Hirschia baltica ATCC
          49814]
          Length = 474

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++   +  R  R + ++TQK        + S++++LE  +  +    ++ LA T    L 
Sbjct: 10 KLFIGHKIREARLKNQMTQKAFAEALNVSTSYLNQLENNQRHVTAGILLALAQTFGLDLK 69

Query: 79 KL 80
           L
Sbjct: 70 TL 71


>gi|227523447|ref|ZP_03953496.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290]
 gi|227089374|gb|EEI24686.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290]
          Length = 117

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R +   +Q+++ +     +  IS  E G S  ++ N+ +L+   D PL   +K
Sbjct: 7  QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVK 64


>gi|148273208|ref|YP_001222769.1| Cro/CI family transcriptional regulator [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
 gi|147831138|emb|CAN02090.1| putative transcriptional regulator, Cro/CI family [Clavibacter
          michiganensis subsp. michiganensis NCPPB 382]
          Length = 102

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R +   T +++ ++   A  ++SE+E G+   + + +  +A  LDTP+ 
Sbjct: 5  RQEIGDVLRDFRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVAEALDTPIS 64

Query: 79 KLLK 82
           +++
Sbjct: 65 VIMR 68


>gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
 gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1]
          Length = 255

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
               M      R+ R +   +Q  +    G +Q+ I ++E   +  +   +  LA  L 
Sbjct: 12 SFPIEMTVGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQRS-RALPRLAQCLG 70

Query: 75 TPLWKL 80
            L  L
Sbjct: 71 VDLLTL 76


>gi|89100699|ref|ZP_01173555.1| hypothetical protein B14911_02414 [Bacillus sp. NRRL B-14911]
 gi|89084574|gb|EAR63719.1| hypothetical protein B14911_02414 [Bacillus sp. NRRL B-14911]
          Length = 179

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +RK+  LTQ EI       +++ S++E+G    + +    +   L+     L 
Sbjct: 8  RLRKKRNLTQAEIAELIHIDRAYYSQIESGLRNPSEEISRSIGRVLNIDPLLLF 61


>gi|134300926|ref|YP_001114422.1| XRE family transcriptional regulator [Desulfotomaculum reducens
          MI-1]
 gi|134053626|gb|ABO51597.1| transcriptional regulator, XRE family [Desulfotomaculum reducens
          MI-1]
          Length = 152

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF    + +R+   LTQ+ + +     +S I+  ET K   + D +  LA   +  +  L
Sbjct: 3  IFRKRMKELREGKGLTQQALADALNIGKSAIALYETEKRQPDPDTLKKLAQFFNCSVDYL 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
 gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis
          ACS-025-V-Sch4]
          Length = 202

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +RK +  TQ+++        S I   E  + T + D +   A   D  L  
Sbjct: 1  MSVGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDERTPSPDVLKKYADIFDVSLDY 60

Query: 80 LL 81
          +L
Sbjct: 61 IL 62


>gi|313905588|ref|ZP_07838950.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
 gi|313469535|gb|EFR64875.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens
          6]
          Length = 58

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          MIF    + IRK   +TQ+++  + G ++  +++ E+G+   +I N+I 
Sbjct: 1  MIFSEKLQLIRKSKGMTQEDLAEKLGVSRQAVAKWESGQVYPDISNLIQ 49


>gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4]
 gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               +  R EA +TQ+++   +G  Q  IS+LE G+++   D ++ LA  L  
Sbjct: 3  LGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRASETSD-IVSLAKALGV 55


>gi|283834929|ref|ZP_06354670.1| DNA-binding protein [Citrobacter youngae ATCC 29220]
 gi|291069195|gb|EFE07304.1| DNA-binding protein [Citrobacter youngae ATCC 29220]
          Length = 74

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  + +   R  R    +TQ E+    G  QS+I+++E G+  ++I   + L   +    
Sbjct: 8  EYQMVIKALREARVAGHITQDELGKALGRPQSFIAKVENGERRLDIVEFVHLCRLVGIDP 67

Query: 78 WKLL 81
            ++
Sbjct: 68 VSII 71


>gi|320007540|gb|ADW02390.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
          33331]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  R  RK   L+Q E+  R   +   IS +ETG+ST +   ++ LA  LD P+ +
Sbjct: 11 GSLLRGWRKLRGLSQLELALRADSSARHISFIETGRSTPSRSMVLHLAEHLDVPVRE 67


>gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657]
 gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RK   +TQ+E+    G   S +   ET     + + +I +A         L
Sbjct: 1  MLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|254510463|ref|ZP_05122530.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221534174|gb|EEE37162.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 431

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R  R+ A L Q E+  R G + S+++ +E  +  I    ++ +A  L      L +
Sbjct: 7  GSRIRERRQIAGLRQAELARRVGISASYLNLIEHNRRRIGGKVLVDIAAALSVEPSLLTQ 66


>gi|206599924|ref|YP_002241730.1| gp45 [Mycobacterium phage Fruitloop]
 gi|206287012|gb|ACI12358.1| gp45 [Mycobacterium phage Fruitloop]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
              R IR+    +  E+   +G +  ++S+LE G    N      LA  L  P+  L +P
Sbjct: 52  QELRIIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 111


>gi|188588525|ref|YP_001920110.1| helix-turn-helix domain protein [Clostridium botulinum E3 str.
          Alaska E43]
 gi|188498806|gb|ACD51942.1| helix-turn-helix domain protein [Clostridium botulinum E3 str.
          Alaska E43]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++  +       IS +E+G+S  ++D +  LA TL+  +
Sbjct: 2  EILSLGEKIKTRRKELNMTLKDLA-KNRITPGQISLIESGRSNPSMDLLEYLAATLNISI 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EHLME 65


>gi|182624278|ref|ZP_02952063.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
 gi|177910496|gb|EDT72869.1| DNA-binding protein [Clostridium perfringens D str. JGS1721]
          Length = 223

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 32/56 (57%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R+++ +TQK +  + G A+ +++E+ETG+  IN   +  ++  L+T L
Sbjct: 4  VGERIKEAREKSGMTQKALAKKLGVAEKFVNEVETGRKIINESLISKVSKVLNTDL 59


>gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf]
 gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RK   +TQ+E+    G   S +   ET     + + +I +A         L
Sbjct: 1  MLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|167761483|ref|ZP_02433610.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC
          35704]
 gi|167661149|gb|EDS05279.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC
          35704]
          Length = 80

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ +F+ N    +RKE  + Q+E+      ++  I  LE G+   +I     L+      
Sbjct: 9  KKEVFMKNRLEELRKERGIKQEELAAELEVSRQTIGSLENGRYNPSILLAFKLSKYFGLK 68

Query: 77 LWKLL 81
          +  + 
Sbjct: 69 IEDIF 73


>gi|163868999|ref|YP_001610229.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
 gi|161018676|emb|CAK02234.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
          Length = 129

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+ R    L+QK + N  G +   I + E G + ++   ++ +A  L  P+
Sbjct: 21 GARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPI 75


>gi|148912804|ref|YP_001293383.1| Repressor protein [Pseudomonas phage F10]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP-LW 78
           +  RK AKLTQ ++  R G  Q+ IS LE GKS      +  LA       LW
Sbjct: 7  IKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKSQGTA-YIAQLAAACGVSALW 59


>gi|148987838|ref|ZP_01819301.1| hypothetical protein CGSSp6BS73_10011 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926302|gb|EDK77375.1| hypothetical protein CGSSp6BS73_10011 [Streptococcus pneumoniae
          SP6-BS73]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  F   ++ IR+   LTQ+E+      +++ +S++E+GK+T   +NM  L   ++    
Sbjct: 2  RYDFGKVYKEIRESIGLTQEEVCGGV-LSRTSLSKIESGKTTPKYENMEFLLRQINMSFE 60

Query: 79 K 79
          +
Sbjct: 61 E 61


>gi|21910272|ref|NP_664540.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes MGAS315]
 gi|28876201|ref|NP_795428.1| hypothetical protein SpyM3_0736 [Streptococcus pyogenes phage
          315.1]
 gi|28895849|ref|NP_802199.1| repressor C1 [Streptococcus pyogenes SSI-1]
 gi|21904467|gb|AAM79343.1| conserved hypothetical protein - phage-associated [Streptococcus
          pyogenes phage 315.1]
 gi|28811098|dbj|BAC64032.1| putative repressor C1 [Streptococcus pyogenes SSI-1]
          Length = 69

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R+ RK AKL Q ++       Q  I  +E GK    + +++ L    +  +  
Sbjct: 5  EFVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDD 64

Query: 80 LL 81
           L
Sbjct: 65 FL 66


>gi|328553992|gb|AEB24484.1| hypothetical protein BAMTA208_11595 [Bacillus amyloliquefaciens
          TA208]
          Length = 74

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N RK   LTQ+ +  +  + +S IS  E G ST  +++   +A  LD  + +L 
Sbjct: 5  KLVNARKAKGLTQENLAEKLMYKKSTISNWENGYSTPKMEDAFKVAEILDCDIKELF 61


>gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
 gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
          Length = 103

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +  + +R E  LTQKE+        + IS  E G++  +ID +  L+   +     L+
Sbjct: 5  SRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNEPSIDTLKKLSSLFNVSTEYLI 62


>gi|256378649|ref|YP_003102309.1| XRE family transcriptional regulator [Actinosynnema mirum DSM
          43827]
 gi|255922952|gb|ACU38463.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM
          43827]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R+   L+Q+ +      +   +S +ETG +    + ++ LA  LD P  +
Sbjct: 21 LRAWRRRKSLSQQGLAEAAAVSARHVSRVETGLAHPTPEMILRLAEHLDVPQPE 74


>gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum
          ATCC 51196]
 gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum
          ATCC 51196]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  ++A + E+ I     + +R +  +   E+   TG + S++S+LETG+    + N+  
Sbjct: 16 PASAEAFISEKRI-GERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLAR 74

Query: 69 LAHTLDTPL 77
          +A      L
Sbjct: 75 IAMVFSKDL 83


>gi|225175042|ref|ZP_03729039.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
          AHT 1]
 gi|225169682|gb|EEG78479.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus
          AHT 1]
          Length = 65

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+E+  + G  ++ ++ +E G+   +I     +A      + +L 
Sbjct: 3  NKLKVYRAMHDLTQEELAKKLGVTRATVNSIEKGRYDPSIKLAFKMARFFAVNVEELF 60


>gi|254501957|ref|ZP_05114108.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
 gi|222438028|gb|EEE44707.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    +  R   +L+Q ++    G +Q  IS LETG+S  +   +  L   L  P+ ++
Sbjct: 8  FPELLKTWRSRRRLSQLDLALEAGLSQRHISFLETGRSKPSRMAISQLGLALGMPVAEV 66


>gi|221231412|ref|YP_002510564.1| hypothetical protein SPN23F_05280 [Streptococcus pneumoniae ATCC
          700669]
 gi|225860586|ref|YP_002742095.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298230934|ref|ZP_06964615.1| helix-turn-helix domain protein [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|298255848|ref|ZP_06979434.1| helix-turn-helix domain protein [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502379|ref|YP_003724319.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae TCH8431/19A]
 gi|220673872|emb|CAR68377.1| putative uncharacterized protein [Streptococcus pneumoniae ATCC
          700669]
 gi|225727200|gb|ACO23051.1| helix-turn-helix domain protein [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298237974|gb|ADI69105.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae TCH8431/19A]
 gi|327390324|gb|EGE88665.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA04375]
 gi|332074396|gb|EGI84872.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17570]
 gi|332076422|gb|EGI86885.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41301]
          Length = 88

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETG+S++ +D ++ +  +L   L
Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTL 78


>gi|212716513|ref|ZP_03324641.1| hypothetical protein BIFCAT_01439 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660594|gb|EEB21169.1| hypothetical protein BIFCAT_01439 [Bifidobacterium catenulatum DSM
           16992]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAHTLDTPLWKLLK 82
            R+IR+    TQ E+   TG  Q  IS  ETG  + +   +D    L+  L       LK
Sbjct: 117 LRDIRRTRGYTQSELSEMTGIPQPNISWFETGYRSTSGMRLDTARRLSEALQCDPTDFLK 176


>gi|220918294|ref|YP_002493598.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
 gi|219956148|gb|ACL66532.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-1]
          Length = 477

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R +R++  LTQ ++ +R G + S+++ +E  +  +    +I LA      L  L
Sbjct: 8  LGAKVRALRRQRNLTQVQLADRLGISASYLTLIEHNRRPLPALLLIKLADLFQLDLKSL 66


>gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes]
 gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  R E K  Q EI  + G  ++  ++ E+GKS  N  N+  LA  LD P
Sbjct: 4  GIRLKEKRIERKFNQSEIAYKLGINRASYNKWESGKSVPNQKNLTALATILDVP 57


>gi|254247276|ref|ZP_04940597.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184]
 gi|124872052|gb|EAY63768.1| hypothetical protein BCPG_02063 [Burkholderia cenocepacia PC184]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|320534658|ref|ZP_08035102.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|320133133|gb|EFW25637.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str.
          F0337]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D P   + +L  R       R +R+    T +E+ ++   +  ++SE+E G+   + + +
Sbjct: 16 DTPKHENVVL--RREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELL 73

Query: 67 IILAHTLDTPLWKLLK 82
            +   LD PL  +L+
Sbjct: 74 ASICQALDAPLSMVLR 89


>gi|311900357|dbj|BAJ32765.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
          Length = 274

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE+          R++   +Q E+ N    +   I  +ETG+S  + + ++ LA  LD P
Sbjct: 18 REQARAGRLLAKWRRQRGFSQLELANLADVSARHIGFVETGRSQPSREMVLRLAGHLDVP 77


>gi|312866087|ref|ZP_07726308.1| transcriptional regulator, AbrB family [Streptococcus downei
          F0415]
 gi|311098491|gb|EFQ56714.1| transcriptional regulator, AbrB family [Streptococcus downei
          F0415]
          Length = 162

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           N   +RK    +Q++I  +   ++    + E+G++  NI+   +LA      +  L++
Sbjct: 21 ENLIMLRKLKGFSQEKIAEKIAISRQAYGKWESGETIPNIEKCALLAEVYGVTIDSLIR 79


>gi|291545337|emb|CBL18445.1| transcriptional regulator, XRE family [Ruminococcus sp. SR1/5]
          Length = 71

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +++R +A L+Q+E+      +Q   S  ETG   I I+ +I LA+  DT +  L+
Sbjct: 3  FQRIQDLRTDADLSQRELSEILHISQRSYSHYETGSRNIPIEMLIRLANYYDTSIDYLV 61


>gi|260597934|ref|YP_003210505.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032]
 gi|260217111|emb|CBA30892.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ RKE  +T   +  R G ++  + ELE   +  +I  +  +A  L   +  LL
Sbjct: 22 LAQRLKSWRKEHNVTLDTLSRRAGVSKGMLVELEKAAANPSIAILCKIAAALGLSVADLL 81


>gi|302518087|ref|ZP_07270429.1| regulatory protein [Streptomyces sp. SPB78]
 gi|318062288|ref|ZP_07981009.1| regulatory protein [Streptomyces sp. SA3_actG]
 gi|318080399|ref|ZP_07987731.1| regulatory protein [Streptomyces sp. SA3_actF]
 gi|302426982|gb|EFK98797.1| regulatory protein [Streptomyces sp. SPB78]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R+  +LT   +  R+G +  ++S++E  ++  +  ++  +AH L+T + +L 
Sbjct: 9  VGNAVRRRRRALELTLATVARRSGLSVPFLSQIENERARPSTRSLSAVAHALETTVDELF 68


>gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
 gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          oryzae str. 1_6]
          Length = 115

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK + L+Q ++  + G     I   E G +   I+ +I +A   +    +L
Sbjct: 1  MVGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGINLPGIEQLIRIATVFNVAPGEL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061]
 gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061]
          Length = 71

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R E   TQK++  + G  +  ++ +E GK ++++     +A T +  L+ + +
Sbjct: 5  NRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYDVFQ 63


>gi|171778925|ref|ZP_02919987.1| hypothetical protein STRINF_00848 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
 gi|171282571|gb|EDT47995.1| hypothetical protein STRINF_00848 [Streptococcus infantarius
          subsp. infantarius ATCC BAA-102]
          Length = 65

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK  K++Q E+    G  +  I  LE G+   +++    +A      + ++ 
Sbjct: 4  RIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAEYFGMTIEEIF 60


>gi|188585017|ref|YP_001916562.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179349704|gb|ACB83974.1| transcriptional regulator, XRE family [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R+   L++K++    G  +  I +LE G+   ++  +  ++  L   +   +
Sbjct: 11 GDRIREERERLDLSRKKLGRLIGVTEHHIGQLERGERNTSLTTLAKISQVLKVSIDSFV 69


>gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia
          thailandensis TXDOH]
          Length = 132

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  R    P  +   L    +        R+   LTQ ++       Q  IS  E G   
Sbjct: 1  MTTRPTSPPDDAQDALLAARV-GTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRM 59

Query: 61 INIDNMIILAHTLDTPLWKLLK 82
            +  +  L+  LD  + +LL+
Sbjct: 60 PTLHRLQQLSDALDCSVDQLLQ 81


>gi|42520374|ref|NP_966289.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|42410112|gb|AAS14223.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     RN R     TQK++  +       I + E G   I+I  +  LA  L T    
Sbjct: 14 KVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKLYELAEALSTTARD 73

Query: 80 L 80
          L
Sbjct: 74 L 74



 Score = 43.8 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQ+++ ++ G     I E E G++ ++++ +  +A  L   +  LL
Sbjct: 170 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEIAKVLLINITDLL 229


>gi|114567516|ref|YP_754670.1| hypothetical protein Swol_2004 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
 gi|114338451|gb|ABI69299.1| hypothetical protein Swol_2004 [Syntrophomonas wolfei subsp.
          wolfei str. Goettingen]
          Length = 127

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +R       R +R+  K TQ+E+    G ++     LE G   I    +  +A  L  P
Sbjct: 2  KREALARRIRELREAYKKTQEEMAGVVGISRQAYIRLEKGAREIAFVEIEKIADYLGIP 60


>gi|194335730|ref|YP_002017524.1| transcriptional regulator, XRE family [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308207|gb|ACF42907.1| transcriptional regulator, XRE family [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 108

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82
               + R+ + +TQ+ +  + G  +S IS LE+G K + ++  +   A  ++  L   LK
Sbjct: 41  RELLSARQLSGMTQEAVALKIGTTKSAISRLESGSKHSPSLTTLRKYAEAVNCELEIKLK 100

Query: 83  P 83
           P
Sbjct: 101 P 101


>gi|329947476|ref|ZP_08294678.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
          170 str. F0386]
 gi|328524755|gb|EGF51810.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
          170 str. F0386]
          Length = 120

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D P   + +L  R       R +R+    T +E+ ++   +  ++SE+E G+   + + +
Sbjct: 16 DTPKHENVVL--RREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELL 73

Query: 67 IILAHTLDTPLWKLLK 82
            +   LD PL  +L+
Sbjct: 74 ASICQALDAPLSMVLR 89


>gi|315268235|gb|ADT95088.1| transcriptional regulator, XRE family [Shewanella baltica OS678]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKL 80
              + +RK   +TQ E+ +    AQ+ I +LE G        N+  LA  L T    L
Sbjct: 4  AERVKRLRKALGMTQYELADLVSTAQTSIQKLERGDTKNPR--NIEALAKALQTTPEFL 60


>gi|313794167|gb|EFS42187.1| cupin domain protein [Propionibacterium acnes HL110PA1]
 gi|313803289|gb|EFS44485.1| cupin domain protein [Propionibacterium acnes HL110PA2]
 gi|313812436|gb|EFS50150.1| cupin domain protein [Propionibacterium acnes HL025PA1]
 gi|313839180|gb|EFS76894.1| cupin domain protein [Propionibacterium acnes HL086PA1]
 gi|314963824|gb|EFT07924.1| cupin domain protein [Propionibacterium acnes HL082PA1]
 gi|315078309|gb|EFT50348.1| cupin domain protein [Propionibacterium acnes HL053PA2]
 gi|327334383|gb|EGE76094.1| putative Helix-turn-helix domain protein [Propionibacterium acnes
          HL097PA1]
 gi|327455918|gb|EGF02573.1| cupin domain protein [Propionibacterium acnes HL092PA1]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R   + T  ++ +  G ++  +  +E G     +  ++ L+  L   L  L++
Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72

Query: 83 P 83
          P
Sbjct: 73 P 73


>gi|313499703|gb|ADR61069.1| Transcriptional regulator, putative [Pseudomonas putida BIRD-1]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83
          +RK   LT  E+  R   +  ++S++E G S   + ++  ++  L       + L KP
Sbjct: 17 LRKFKNLTLGELAERINRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74


>gi|308172435|ref|YP_003919140.1| hypothetical protein BAMF_0544 [Bacillus amyloliquefaciens DSM 7]
 gi|307605299|emb|CBI41670.1| yqaE hypothetical protein B. subtilis [Bacillus amyloliquefaciens
          DSM 7]
          Length = 126

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R   KL Q+E+ +  G A++  +  E GK   + + ++ +A   D  +  LL
Sbjct: 3  FSFRLKELRVGRKLNQQEVADNLGIARTTYASYEQGKREPDHETLVKIADFFDVSIDFLL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|307324459|ref|ZP_07603667.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306890190|gb|EFN21168.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 274

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           +       R  +    R  R  A++TQ+ +  R   + + IS  E G+     D+   +
Sbjct: 2  QMDRRPRTAREKYGEELRLRRIAAEMTQEALSERVVCSPTLISHFEAGRRLPRPDDAARI 61

Query: 70 AHTLDT 75
             L T
Sbjct: 62 DQALGT 67


>gi|291084897|ref|YP_003495180.1| gp39 [Mycobacterium phage Ardmore]
 gi|262262733|gb|ACY39921.1| gp39 [Mycobacterium phage Ardmore]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
              R IR+    +  E+   +G +  ++S+LE G    N      LA  L  P+  L +P
Sbjct: 52  QELRIIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 111


>gi|237723180|ref|ZP_04553661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447702|gb|EEO53493.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 97

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            + + KE  +T  ++  + G  Q  +S    G     ++ +  +A+ L+  + +L  P
Sbjct: 2  RIKEVCKEKGITVSQLAEKMGIKQESLSRAING--NPTLETLERIANALEVDITELFAP 58


>gi|226948715|ref|YP_002803806.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
 gi|226842413|gb|ACO85079.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto]
          Length = 73

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLLK 82
           R +R +   TQ+ +  R G  Q +IS LE G+   + I  +  L+  L     KLL+
Sbjct: 1  MRKLRTKLGYTQETLGERIGVEQPYISRLENGEIEFMTIGKLKKLSRALQVHPVKLLE 58


>gi|261346677|ref|ZP_05974321.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
 gi|282565383|gb|EFB70918.1| toxin-antitoxin system, antitoxin component, Xre family
          [Providencia rustigianii DSM 4541]
          Length = 87

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N+ R  R    L+ +E+      +Q  IS  E G + +++D +I +A  LD  + ++
Sbjct: 12 VLGNHLRKARVSKGLSGQELAGIIQLSQQQISRYELGINKLSLDKLIEIAIFLDIDINEI 71

Query: 81 LK 82
           K
Sbjct: 72 TK 73


>gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
 gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus
          acidocaldarius LAA1]
          Length = 167

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                 +RKE  LTQ ++  R   + S I+  ET +   +   +  +A  L   + ++
Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMAQI 68


>gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702]
 gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702]
          Length = 302

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F    + +RK++ +TQ+++  + G     +S+ E G S  + D +  +A   D  +  L
Sbjct: 5  FSKQLQMLRKQSGITQEQLAAKLGVTAQAVSKWENG-SYPDGDLLPKIADIFDVSIDNL 62


>gi|160935566|ref|ZP_02082941.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441310|gb|EDP19020.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC
          BAA-613]
          Length = 115

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  R+E  ++Q  +  + G     I  +E  +     + +  L  TL  P  +
Sbjct: 6  KTLGTVIRKAREEQGMSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLVTTLRIPADR 65

Query: 80 LLKP 83
          +  P
Sbjct: 66 IFYP 69


>gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK49]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 31/58 (53%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++         LLK
Sbjct: 6  RIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDYLLK 63


>gi|323487309|ref|ZP_08092609.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum
          WAL-14163]
 gi|323694251|ref|ZP_08108427.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum
          WAL-14673]
 gi|323399354|gb|EGA91752.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum
          WAL-14163]
 gi|323501724|gb|EGB17610.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum
          WAL-14673]
          Length = 126

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R     TQ+++ +  G   S     ETGK   ++  +  LA  L T    
Sbjct: 1  MSFTERLKEARISVGYTQQQVADAMGITNSTYCGYETGKRQPDVAKIKQLAKILKTSGDF 60

Query: 80 LLK 82
          LL+
Sbjct: 61 LLE 63


>gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus
          B316]
 gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus
          B316]
          Length = 374

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  + +R    LTQ+++      +   IS  E G ST +I  +  +A         L 
Sbjct: 4  LGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTDYLF 63


>gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     ++RK+ +LTQK++  + G   S IS+ E       I  +  LA  L T    LL
Sbjct: 6  FGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLL 65


>gi|253723667|ref|YP_003023953.1| TrbA DNA binding protein [Photobacterium damselae subsp.
          piscicida]
 gi|251752731|dbj|BAH83604.1| TrbA DNA binding protein [Photobacterium damselae subsp.
          piscicida]
          Length = 125

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          IF  N   I  E  +T+ E+  R+G + S++S+L TG +  ++  +  +A  
Sbjct: 5  IFFTNVLKILDERHMTKSELAERSGVSISFLSDLTTGNANPSLKVLEAIASA 56


>gi|229817429|ref|ZP_04447711.1| hypothetical protein BIFANG_02691 [Bifidobacterium angulatum DSM
           20098]
 gi|229785218|gb|EEP21332.1| hypothetical protein BIFANG_02691 [Bifidobacterium angulatum DSM
           20098]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 5   KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
           K  E       L  R       R++R     T +E+  + G +  ++SE+E G+   + +
Sbjct: 93  KPTEHQEDTLSL--RGAIGLVLRDLRSRDHKTLREVSEKAGVSLGYLSEVERGQKEASSE 150

Query: 65  NMIILAHTLDTPLWKLLK 82
            +  +A  L     +LL+
Sbjct: 151 LLSSIAEALGVSTAQLLR 168


>gi|224824859|ref|ZP_03697966.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224603352|gb|EEG09528.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R G   + IS +E  + + ++ +++ L   +   L     
Sbjct: 4  GPRLKLVRERYKLSQRELAKRAGVTNATISLIEQNRVSPSVSSLVKLLEGIPMSLADFFT 63


>gi|154508670|ref|ZP_02044312.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC
          17982]
 gi|153798304|gb|EDN80724.1| hypothetical protein ACTODO_01174 [Actinomyces odontolyticus ATCC
          17982]
          Length = 156

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 28/44 (63%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           R  R++A LTQ E+   TG +QS ++++E+GK  ++ + +  +
Sbjct: 13 VRAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVSSELLERI 56


>gi|150005960|ref|YP_001300704.1| hypothetical protein BVU_3458 [Bacteroides vulgatus ATCC 8482]
 gi|254881845|ref|ZP_05254555.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641134|ref|ZP_07995837.1| hypothetical protein HMPREF9011_01434 [Bacteroides sp. 3_1_40A]
 gi|149934384|gb|ABR41082.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254834638|gb|EET14947.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387265|gb|EFV68141.1| hypothetical protein HMPREF9011_01434 [Bacteroides sp. 3_1_40A]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK   LTQ+E+    G  ++ +S++E G   +N   +  +A  L       LK
Sbjct: 9  GELLAQCRKNKGLTQEEVGVMIGVQKAMVSKVENGLC-VNFGTVNRIAEALGVEPIVALK 67


>gi|154250733|ref|YP_001411557.1| XRE family transcriptional regulator [Parvibaculum
          lavamentivorans DS-1]
 gi|154154683|gb|ABS61900.1| transcriptional regulator, XRE family [Parvibaculum
          lavamentivorans DS-1]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R     +Q+E+  R G     IS +E  + + ++ ++  +       +   L 
Sbjct: 28 GARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRISPSVGSLKKVLDGFPISIADFLT 87


>gi|56461519|ref|YP_156800.1| Cro/CI family transcriptional regulator [Idiomarina loihiensis
          L2TR]
 gi|56180529|gb|AAV83251.1| Transcriptional regulator, Cro/CI family [Idiomarina loihiensis
          L2TR]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 RK+  ++  E+      ++  + ++E G++  +I  +  LA+ L   +  ++
Sbjct: 14 AKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRANPSIGILCKLANALAVSVADIV 72


>gi|83858712|ref|ZP_00952234.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis
          alexandrii HTCC2633]
 gi|83853535|gb|EAP91387.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis
          alexandrii HTCC2633]
          Length = 67

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R +R E + +Q ++  R G ++  I+ +ET K   ++     +A   +  +  +  P
Sbjct: 3  NRIRVLRAERRWSQADLGERVGVSRQAINAVETSKHDPSLSLAFKIAEAFEAKIEDVFDP 62


>gi|114049428|ref|YP_739978.1| XRE family transcriptional regulator [Shewanella sp. MR-7]
 gi|113890870|gb|ABI44921.1| transcriptional regulator, XRE family [Shewanella sp. MR-7]
          Length = 510

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINID 64
            +++R+        RN+RK   LT +++  R          + S++S +E GK   + +
Sbjct: 4  DQSLMRKSHFLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAE 63

Query: 65 NMIILAHTLDT 75
           + ++A     
Sbjct: 64 MLAVIATVFQK 74


>gi|117919707|ref|YP_868899.1| XRE family transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612039|gb|ABK47493.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK   L+Q+   + +  +++++S LE    +  +  +  L   ++     LL
Sbjct: 7  LARALKAVRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLSKLAELCEVMEVHPLTLL 64

Query: 82 K 82
           
Sbjct: 65 T 65


>gi|319938747|ref|ZP_08013111.1| xre family toxin-antitoxin system [Streptococcus anginosus
          1_2_62CV]
 gi|319811797|gb|EFW08063.1| xre family toxin-antitoxin system [Streptococcus anginosus
          1_2_62CV]
          Length = 98

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++   + R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 29 RVAIMSELIDARNEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 87


>gi|313771648|gb|EFS37614.1| cupin domain protein [Propionibacterium acnes HL074PA1]
 gi|313831440|gb|EFS69154.1| cupin domain protein [Propionibacterium acnes HL007PA1]
 gi|313834091|gb|EFS71805.1| cupin domain protein [Propionibacterium acnes HL056PA1]
 gi|314974865|gb|EFT18960.1| cupin domain protein [Propionibacterium acnes HL053PA1]
 gi|314977806|gb|EFT21900.1| cupin domain protein [Propionibacterium acnes HL045PA1]
 gi|314984545|gb|EFT28637.1| cupin domain protein [Propionibacterium acnes HL005PA1]
 gi|315095655|gb|EFT67631.1| cupin domain protein [Propionibacterium acnes HL038PA1]
 gi|327332969|gb|EGE74701.1| putative Helix-turn-helix domain protein [Propionibacterium acnes
          HL096PA2]
 gi|327448676|gb|EGE95330.1| cupin domain protein [Propionibacterium acnes HL043PA1]
 gi|327451098|gb|EGE97752.1| cupin domain protein [Propionibacterium acnes HL043PA2]
 gi|328761942|gb|EGF75451.1| putative Helix-turn-helix domain protein [Propionibacterium acnes
          HL099PA1]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 25/61 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R   + T  ++ +  G ++  +  +E G     +  ++ L+  L   L  L++
Sbjct: 13 GARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVE 72

Query: 83 P 83
          P
Sbjct: 73 P 73


>gi|307267664|ref|ZP_07549123.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306917316|gb|EFN47631.1| transcriptional regulator, XRE family [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 427

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  + +R +  L+Q E+      ++  +S +E+GK+  +++ +  LA  L+ P
Sbjct: 6  GDKIKALRLQKNLSQSELCGNF-MSRVVLSRIESGKALPSLEQLAYLAEKLEVP 58


>gi|300919981|ref|ZP_07136440.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
 gi|300412928|gb|EFJ96238.1| peptidase S24-like domain protein [Escherichia coli MS 115-1]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F          A ++Q ++ +  G +Q  I ++ +GK+  +   M+ LA+ L      
Sbjct: 2  KTFAERLNAAMSSAGVSQSQLADMVGISQPAIQKMSSGKTNGS-RKMVELANALKVRPEW 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|282851954|ref|ZP_06261314.1| DNA-binding protein [Lactobacillus gasseri 224-1]
 gi|282556963|gb|EFB62565.1| DNA-binding protein [Lactobacillus gasseri 224-1]
          Length = 158

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLWKL 80
          F    R      K+T  E+  +TGF++S +S+    K+    D +  +A  L+  P W L
Sbjct: 5  FSARIRKALDYRKMTAAELSRQTGFSRSILSQYINNKANPKQDKVYKIAKALNINPTWLL 64

Query: 81 LKP 83
            P
Sbjct: 65 GYP 67


>gi|260598023|ref|YP_003210594.1| HTH-type transcriptional regulator YdcN [Cronobacter turicensis
          z3032]
 gi|260217200|emb|CBA31069.1| Uncharacterized HTH-type transcriptional regulator ydcN
          [Cronobacter turicensis z3032]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   +  +    TG +++ + ++E  +S+  +  +  +A   + P    +
Sbjct: 35 LAQTLKALRQQKNWSLTQAAQETGVSKAMLGQIERNESSPTVATLWKIATGFNVPFSVFI 94

Query: 82 KP 83
           P
Sbjct: 95 TP 96


>gi|255524575|ref|ZP_05391529.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296185777|ref|ZP_06854184.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
 gi|255511728|gb|EET88014.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296049605|gb|EFG89032.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
          Length = 231

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +F    +  RKE  LTQK++  +   ++  I +LETG    +   +  +       +
Sbjct: 1  MFSQKLKKYRKELGLTQKDLGKKLDLSKESIGQLETGLKEPSKALLEKIYKFSGKNM 57


>gi|258516796|ref|YP_003193018.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257780501|gb|ACV64395.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKLL 81
           N  R  R     TQK++      +   IS  E G +  I  D+++ LA  L      LL
Sbjct: 4  GNRIRTQRILKDFTQKQLAELVNVSPQVISNWERGYTPVIPHDDVVRLADALGISPAYLL 63


>gi|254251470|ref|ZP_04944788.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158]
 gi|124894079|gb|EAY67959.1| hypothetical protein BDAG_00657 [Burkholderia dolosa AUO158]
          Length = 259

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 65  QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 124

Query: 80  LLK 82
            L+
Sbjct: 125 FLR 127


>gi|118478631|ref|YP_895782.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196042846|ref|ZP_03110085.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225865314|ref|YP_002750692.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|300118327|ref|ZP_07056074.1| DNA-binding protein [Bacillus cereus SJ1]
 gi|118417856|gb|ABK86275.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196026330|gb|EDX64998.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225788363|gb|ACO28580.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|298724296|gb|EFI64991.1| DNA-binding protein [Bacillus cereus SJ1]
          Length = 67

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++  + G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor
          [Desulfuromonas acetoxidans DSM 684]
 gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor
          [Desulfuromonas acetoxidans DSM 684]
          Length = 219

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RK  KLT + +   TGF+ + IS++E    +  I  +  LA   D  +    
Sbjct: 39 GAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLSKLARFFDVKISHFF 97


>gi|330891950|gb|EGH24611.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          mori str. 301020]
          Length = 109

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +R    L Q E+        + IS  E  ++  NI++++ LA        
Sbjct: 2  RDFVAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAETMPNIEDLLRLADLFGVSPM 61

Query: 79 KLLKP 83
          ++L P
Sbjct: 62 EILPP 66


>gi|329915926|ref|ZP_08276315.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
 gi|327544831|gb|EGF30214.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480]
          Length = 355

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +        RK A L+ +E+  + G   + + + E  ++T     +I LA  L+      
Sbjct: 1  MIGRRLSRARKAAGLSLREVGAQIGLTHASVKKYEDEQATPTSATLIKLARALNVRTEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|317497443|ref|ZP_07955763.1| helix-turn-helix domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895229|gb|EFV17391.1| helix-turn-helix domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN----IDNMIILAHTLDTPLWKL 80
           N + +RK A L+Q+E+ + +G A   I   E  K  IN    ID +  +   L      L
Sbjct: 152 NLKRLRKIAGLSQRELADLSGVALRQIQLFEQKKRNINHTRAIDVL-KIGKVLGCKSEDL 210

Query: 81  LK 82
           L+
Sbjct: 211 LE 212


>gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617]
 gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617]
 gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617]
          Length = 129

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +R++  L+Q+ + +  G   +   + ETG++  +ID +  +A  L      
Sbjct: 11 MSLSERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQPSIDILKKIATALHVSTDF 70

Query: 80 LL 81
          LL
Sbjct: 71 LL 72


>gi|295399293|ref|ZP_06809275.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294978759|gb|EFG54355.1| transcriptional regulator, XRE family [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 80

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +       + IR +  LTQ  +    G+ + S +SE+E GK  I+ D + +LA  LD  +
Sbjct: 2  KRQIGERIKEIRIKKGLTQSYVAKELGYKSPSMLSEIEAGKKGIDADKIPLLAKILDVDI 61

Query: 78 WKLL 81
           +L 
Sbjct: 62 NELF 65


>gi|229014833|ref|ZP_04171932.1| hypothetical protein bmyco0001_52230 [Bacillus mycoides DSM 2048]
 gi|228746463|gb|EEL96367.1| hypothetical protein bmyco0001_52230 [Bacillus mycoides DSM 2048]
          Length = 51

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+++ N+ G  +  I  LE GK   ++     +A  L  P+  L 
Sbjct: 1  MSQEDLANKVGVRRETIGNLENGKYNPSLKLAYDIAQVLKAPIEVLF 47


>gi|255092517|ref|ZP_05321995.1| putative phage repressor [Clostridium difficile CIP 107932]
          Length = 113

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNR------TGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F   F+ +R E  LTQ E+  +      T F +S IS+ E  K    I+ +   A   D 
Sbjct: 4  FGERFKFLRTEMNLTQDELVEKFNKVYLTSFNKSTISQYENNKRKPEINILENWADFFDV 63

Query: 76 PLWKLL 81
           +  LL
Sbjct: 64 SIDYLL 69


>gi|167767361|ref|ZP_02439414.1| hypothetical protein CLOSS21_01880 [Clostridium sp. SS2/1]
 gi|167711336|gb|EDS21915.1| hypothetical protein CLOSS21_01880 [Clostridium sp. SS2/1]
 gi|291559340|emb|CBL38140.1| Helix-turn-helix [butyrate-producing bacterium SSC/2]
          Length = 213

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN----IDNMIILAHTLDTPLWKL 80
           N + +RK A L+Q+E+ + +G A   I   E  K  IN    ID +  +   L      L
Sbjct: 152 NLKRLRKIAGLSQRELADLSGVALRQIQLFEQKKRNINHTRAIDVL-KIGKVLGCKSEDL 210

Query: 81  LK 82
           L+
Sbjct: 211 LE 212


>gi|167762206|ref|ZP_02434333.1| hypothetical protein BACSTE_00558 [Bacteroides stercoris ATCC
          43183]
 gi|167699849|gb|EDS16428.1| hypothetical protein BACSTE_00558 [Bacteroides stercoris ATCC
          43183]
          Length = 86

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + I KE  +T  E+ ++ G ++  +S    G +   I +   +A  L+ P+W+L 
Sbjct: 2  NRIKEILKEQGVTINELADKLGISRVTLSTQINGTAN--IVSYEKIATALNVPMWQLF 57


>gi|167461704|ref|ZP_02326793.1| Transcriptional regulator, XRE family protein [Paenibacillus
          larvae subsp. larvae BRL-230010]
 gi|322384015|ref|ZP_08057743.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321151382|gb|EFX44571.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 152

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R++ KL+Q+E+    G  +Q+ IS++E G    +   + +LA  L   +  L 
Sbjct: 11 GKIIKQLRQKYKLSQEELAK--GICSQAHISKIERGIQFPSGVMLYLLAQKLRISVDYLF 68

Query: 82 KP 83
           P
Sbjct: 69 NP 70


>gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 71

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R E   TQK++  + G  +  ++ +E GK ++++     +A T +  L+ + +
Sbjct: 5  NRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYDVFQ 63


>gi|91214743|ref|ZP_01251716.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC
          700755]
 gi|91187170|gb|EAS73540.1| hypothetical protein P700755_17799 [Psychroflexus torquis ATCC
          700755]
          Length = 104

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +     ++R +A L+Q E+  +TG ++S I+ +E G    +I ++I ++ +L+
Sbjct: 17 WGEKLSSLRVDAGLSQTELAQKTGMSRSSIAGIEKG-RNFSIASLISISRSLE 68


>gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3]
 gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +  ++ RK   L+Q+E+  + G  ++ IS  E G  +     +I L+   D  +  
Sbjct: 8  KYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDD 67

Query: 80 LL 81
            
Sbjct: 68 FF 69


>gi|85373888|ref|YP_457950.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
 gi|84786971|gb|ABC63153.1| probable transcriptional regulator [Erythrobacter litoralis
          HTCC2594]
          Length = 459

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +RK   +TQ E+  R G + S+++ +E  +  ++   ++ L    D    +L
Sbjct: 9  GAALRRLRKREGVTQAEMAQRLGISASYLTLMERNQRPVSARVIVQLVEQYDFDPRQL 66


>gi|26988663|ref|NP_744088.1| Cro/CI family transcriptional regulator [Pseudomonas putida
          KT2440]
 gi|24983447|gb|AAN67552.1|AE016384_4 transcriptional regulator, Cro/CI family [Pseudomonas putida
          KT2440]
          Length = 102

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++ F   FR +R +  LTQ+        +  +I  LE G+ + ++  +  L   L     
Sbjct: 13 KIAFGRVFRQLRVQRGLTQEAFDPAA--SVRYIRNLEKGEYSPSLATVRGLCDVLAVSPV 70

Query: 79 KLL 81
           L+
Sbjct: 71 TLI 73


>gi|110347395|ref|YP_666211.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110287571|gb|ABG65628.1| transcriptional regulator, XRE family with cupin sensor
          [Chelativorans sp. BNC1]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 34/69 (49%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          DE   +     +++      +  R+  ++T  E+  RT  + S +S +E  KS  +++++
Sbjct: 13 DEKGPASPFSVDQLRIGPRLKAARRLQRITLAELSKRTSISISLLSRIENDKSVPSLESL 72

Query: 67 IILAHTLDT 75
           ++ +T+  
Sbjct: 73 FVITNTMGI 81


>gi|330718206|ref|ZP_08312806.1| transcriptional regulator [Leuconostoc fallax KCTC 3537]
          Length = 71

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R++ KL+Q E+  R G A+  I+ +E  K   ++   + LA+ L+T L  L 
Sbjct: 2  NRIKQYRQKKKLSQYELSQRIGVARQTINLIENDKYNPSLALCLKLAYALETDLNTLF 59


>gi|289649274|ref|ZP_06480617.1| PbsX family transcriptional regulator [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 109

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       + +R    L Q E+        + IS  E  ++  NI++++ LA        
Sbjct: 2  RDFVAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAETMPNIEDLLRLADLFGVSPM 61

Query: 79 KLLKP 83
          ++L P
Sbjct: 62 EILPP 66


>gi|260662800|ref|ZP_05863694.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
 gi|260552881|gb|EEX25880.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + RKE  +TQ  +  +   +   IS+ ETGKS  +   M+ L   L   + +LL
Sbjct: 7  GKFIASCRKERGMTQANLAEKLRISDRAISKWETGKSMPDSGIMLELCDLLKINVNELL 65


>gi|257879733|ref|ZP_05659386.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|260559426|ref|ZP_05831607.1| transcriptional regulator [Enterococcus faecium C68]
 gi|293564063|ref|ZP_06678469.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1162]
 gi|314942820|ref|ZP_07849636.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
 gi|314953504|ref|ZP_07856419.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|314992542|ref|ZP_07857961.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|314997815|ref|ZP_07862725.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|257813961|gb|EEV42719.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|260074525|gb|EEW62846.1| transcriptional regulator [Enterococcus faecium C68]
 gi|291603981|gb|EFF33509.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1162]
 gi|313588156|gb|EFR67001.1| helix-turn-helix protein [Enterococcus faecium TX0133a01]
 gi|313592909|gb|EFR71754.1| helix-turn-helix protein [Enterococcus faecium TX0133B]
 gi|313594486|gb|EFR73331.1| helix-turn-helix protein [Enterococcus faecium TX0133A]
 gi|313598455|gb|EFR77300.1| helix-turn-helix protein [Enterococcus faecium TX0133C]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 29/57 (50%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +R +     ++ R E  ++Q ++    G ++ +++++E G  T +I  M  +   L+
Sbjct: 3  QRNLDYRLLKDRRNEYGVSQNKLATACGLSRPYLNQIENGGVTASIKTMRKIFDQLE 59


>gi|257868167|ref|ZP_05647820.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257874560|ref|ZP_05654213.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257802281|gb|EEV31153.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808724|gb|EEV37546.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 77

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +F    R++R++  LTQ++I      +QS  S  E G   I I  +I LA   DT + 
Sbjct: 2  RTMF-QRIRDLREDNDLTQRQIATLLNVSQSTYSRYENGALDIPIQTLIKLASHYDTSID 60

Query: 79 KLL 81
           L+
Sbjct: 61 YLV 63


>gi|171321294|ref|ZP_02910256.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
 gi|171093421|gb|EDT38604.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          MEX-5]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|169544181|ref|YP_001692956.1| putative addiction system transcriptional regulator [Yersinia
          enterocolitica]
 gi|168218365|emb|CAP20108.1| putative addiction system transcriptional regulator [Yersinia
          enterocolitica]
          Length = 100

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   ++ RK   LTQ+++  + G  +  IS +E G S  N+  +   A  L 
Sbjct: 34 RKALMKQLKDARKALHLTQQDVAQKIGTQKQNISRMENGGSVPNLATLSRYAAALG 89


>gi|116619126|ref|YP_819497.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
 gi|116097973|gb|ABJ63124.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp.
          mesenteroides ATCC 8293]
          Length = 255

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + IR + KLTQ E       +   +S  E  ++   +  +  ++ + + PL KLL
Sbjct: 8  IKKIRDDNKLTQTEFAAFLSVSHQTVSSWERARTRPTLVMLKKISQSFNIPLSKLL 63


>gi|15902557|ref|NP_358107.1| hypothetical protein spr0513 [Streptococcus pneumoniae R6]
 gi|116515852|ref|YP_816011.1| hypothetical protein SPD_0509 [Streptococcus pneumoniae D39]
 gi|15458086|gb|AAK99317.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076428|gb|ABJ54148.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|332202466|gb|EGJ16535.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41317]
          Length = 88

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 78


>gi|313897061|ref|ZP_07830608.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
 gi|312974508|gb|EFR39976.1| DNA-binding helix-turn-helix protein [Selenomonas sp. oral taxon
          137 str. F0430]
          Length = 103

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N R+E  ++Q+++   TG  Q  I+ +E G +   +  ++ +   L   L
Sbjct: 40 NAREEKGISQRQLEELTGIKQPQIARMERGDANPQLGTLLKVLAPLGKTL 89


>gi|292490247|ref|YP_003525686.1| hypothetical protein Nhal_0078 [Nitrosococcus halophilus Nc4]
 gi|291578842|gb|ADE13299.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 167

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            +  R +R     +Q  +    G +Q  I+ +E G   + I+    L   L+  +  L
Sbjct: 92  GDTVRTLRLRKGWSQARLAKELGTSQPHIARIERGTENLAIETCRKLCIALEIDMNAL 149


>gi|260174286|ref|ZP_05760698.1| transcriptional regulator [Bacteroides sp. D2]
 gi|315922556|ref|ZP_07918796.1| transcriptional regulator [Bacteroides sp. D2]
 gi|313696431|gb|EFS33266.1| transcriptional regulator [Bacteroides sp. D2]
          Length = 135

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                 IR+   +TQ ++    G  +  IS++E  +  I+ D +  +A  L  
Sbjct: 12 LGRKIERIRRLRGMTQTDLGELLGVTKQAISKMEQSEK-IDDDKLKQVADALGV 64


>gi|326204880|ref|ZP_08194733.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
 gi|325984929|gb|EGD45772.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM
          2782]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++R     +QK++    G ++  IS+ E G   ++ D +I+ A   +     +
Sbjct: 3  VLSERVKSLRNVKGQSQKDVAKALGKSREAISKYERGTRNLDPDAIILFAKYFNVSSDYM 62

Query: 81 L 81
          L
Sbjct: 63 L 63


>gi|291298169|ref|YP_003509447.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290567389|gb|ADD40354.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 806

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 24/54 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R  R +A L+Q+ +  +   +   I ++E+G+S      + +LA  L   
Sbjct: 12 GRLLRAHRLQAGLSQERLAQKAALSPRTIRQIESGRSQPRASTLKLLAEALGLS 65


>gi|227892050|ref|ZP_04009855.1| conserved hypothetical protein [Lactobacillus salivarius ATCC
           11741]
 gi|227866160|gb|EEJ73581.1| conserved hypothetical protein [Lactobacillus salivarius ATCC
           11741]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           F N  +   +   ++Q E+  R+G +++ I+    GK       +  LA  LD   + LL
Sbjct: 119 FQNRLKIAIENKGISQAELARRSGISRASITGYLKGKYKAKPCAIYSLAQALDVDAFWLL 178


>gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC
          43255]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++    G +   +S+ E+G S  +I+ + +LA   +  + KLL
Sbjct: 6  GKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDKLL 64


>gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC
          49176]
 gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum]
 gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius]
 gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC
          49176]
 gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 114

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 25/60 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R++R ++ +TQ+E+  +    +  +S  E   +  +++ +  +       +    K
Sbjct: 11 GKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMDDFAK 70


>gi|213969499|ref|ZP_03397636.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
 gi|301382711|ref|ZP_07231129.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato Max13]
 gi|302131409|ref|ZP_07257399.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato NCPPB 1108]
 gi|213925870|gb|EEB59428.1| transcriptional regulator [Pseudomonas syringae pv. tomato T1]
          Length = 115

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER+      R  R+   L+Q EI    G  ++ I+ +E+G   +    +  L+      +
Sbjct: 8  ERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARKVEATELKRLSSIYRRSV 67

Query: 78 WKLLK 82
            LL 
Sbjct: 68 EYLLT 72


>gi|172058383|ref|YP_001814843.1| helix-turn-helix domain-containing protein [Exiguobacterium
          sibiricum 255-15]
 gi|171990904|gb|ACB61826.1| helix-turn-helix domain protein [Exiguobacterium sibiricum
          255-15]
          Length = 79

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNR-----TGFAQSWISELETGKSTINIDNMIILAHTL 73
          R +   N + IRKE  +TQ+E+  +     T   +  IS++E     +    ++ +A+ L
Sbjct: 5  RNLIGKNLKRIRKENCITQEELSAKLLTSGTNLDRPMISKIENQTREVTDIELVAIANVL 64

Query: 74 DTPLWKLLK 82
           T +  L++
Sbjct: 65 STSIDSLIE 73


>gi|162457008|ref|YP_001619375.1| transcriptional regulator [Sorangium cellulosum 'So ce 56']
 gi|161167590|emb|CAN98895.1| transcriptional regulator [Sorangium cellulosum 'So ce 56']
          Length = 476

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     R +R+   +TQ ++  R G + S+++ +E  +  +    +I LA      L
Sbjct: 6  LLGAKVRALRRREHMTQVDLAERLGVSASYLNLIENNRRPLTAPLLIRLAQIFQLDL 62


>gi|149021940|ref|ZP_01835927.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP23-BS72]
 gi|147929978|gb|EDK80966.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP23-BS72]
          Length = 299

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|89895561|ref|YP_519048.1| hypothetical protein DSY2815 [Desulfitobacterium hafniense Y51]
 gi|89335009|dbj|BAE84604.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNR-----TGFAQSWISELETGKSTINIDNMIIL 69
            F +N R  R    +TQ+E+  +        ++  ++++E G   I++D +  +
Sbjct: 23 KSFGDNIRKWRNAKGMTQEELSTQLQIHGCDISRGTLAKIEAGIRHISVDELQAI 77


>gi|86137308|ref|ZP_01055885.1| transcriptional regulator, putative [Roseobacter sp. MED193]
 gi|85825643|gb|EAQ45841.1| transcriptional regulator, putative [Roseobacter sp. MED193]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +  R  R    + Q E+  + G + S+++ +E  +  I    ++ LA  L      L
Sbjct: 8  GSRIRERRLILGIRQAELARKAGISASYLNLIEHNRRRIGGKLLVALAQVLGVEPSML 65


>gi|315143624|gb|EFT87640.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX2141]
          Length = 68

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          N  +  R     +Q+E+  + G+ +S  ++ E G  ++ +D +  +A  L+ P
Sbjct: 6  NRLKAERIAKGYSQEELAKKLGWTRSMYTKRENGAVSLGVDELAKIATALEMP 58


>gi|293189013|ref|ZP_06607745.1| putative toxin-antitoxin system, toxin component [Actinomyces
          odontolyticus F0309]
 gi|292822044|gb|EFF80971.1| putative toxin-antitoxin system, toxin component [Actinomyces
          odontolyticus F0309]
          Length = 156

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 28/44 (63%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           R  R++A LTQ E+   TG +QS ++++E+GK  ++ + +  +
Sbjct: 13 VRAARQDASLTQAELAGMTGMSQSTLAQIESGKRAVSSELLERI 56


>gi|302544476|ref|ZP_07296818.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302462094|gb|EFL25187.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           ++    +R  F  + + +R   KLTQK +    G++++++S +E GK
Sbjct: 7  SANLNPLQR--FGRDVKQVRLARKLTQKRLGQAAGYSEAYVSRVEAGK 52


>gi|302536538|ref|ZP_07288880.1| predicted protein [Streptomyces sp. C]
 gi|302445433|gb|EFL17249.1| predicted protein [Streptomyces sp. C]
          Length = 92

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP RK +   L +  L  R+       + R E   +Q+++    G  Q  +S LE  +S 
Sbjct: 1  MP-RKNESDELEERDLAYRI--AQAVYDRRMELGWSQRQLAEAAGMRQPHVSRLEAARSL 57

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
           ++D +  +A  + T L     P
Sbjct: 58 PSLDVLHRVAEAMGTDLMVCFVP 80


>gi|326201209|ref|ZP_08191081.1| transcriptional regulator, XRE family [Clostridium papyrosolvens
          DSM 2782]
 gi|325988777|gb|EGD49601.1| transcriptional regulator, XRE family [Clostridium papyrosolvens
          DSM 2782]
          Length = 63

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RK   L Q+++      ++  I  +E  K    ++  + +A  LDT + +L 
Sbjct: 3  NNIKQLRKAKGLRQEDMAVSLNVSRQTIIAIENNKYNPTLELAMKMARLLDTTIEELF 60


>gi|229829910|ref|ZP_04455979.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles
          DSM 14600]
 gi|229791208|gb|EEP27322.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles
          DSM 14600]
          Length = 367

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    RKE  +TQ+E+ +     ++ +S+ ETG+S  +I  +  LA   +  + +L+
Sbjct: 5  AENIYQRRKEKNITQEELADFMMVTKASVSKWETGQSYPDILLLPKLATFFNVTVDELI 63


>gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+++ N  G +++ +S+ E+G S  +I  +  LA   +  + +LL
Sbjct: 17 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 68


>gi|298529176|ref|ZP_07016579.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298510612|gb|EFI34515.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 91

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 3  RRKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          +RK+  P   +   +    F      +  R EA LTQ+++ +     +S IS +E     
Sbjct: 10 KRKKKSPSFGENFDKGYEQFKIGVLLKQARLEAGLTQEQVASILNTKKSAISRIENHAED 69

Query: 61 INIDNMIILAHTLDTPL 77
          I +  ++  A  +   L
Sbjct: 70 IRLSTLVNYAQAVGKNL 86


>gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
 gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916]
          Length = 381

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+++ N  G +++ +S+ E+G S  +I  +  LA   +  + +LL
Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 65


>gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397]
 gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall]
 gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall]
          Length = 373

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+++ N  G +++ +S+ E+G S  +I  +  LA   +  + +LL
Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 65


>gi|311747423|ref|ZP_07721208.1| putative toxin-antitoxin system, antitoxin component, Xre family
          [Algoriphagus sp. PR1]
 gi|126574781|gb|EAZ79152.1| putative toxin-antitoxin system, antitoxin component, Xre family
          [Algoriphagus sp. PR1]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + IRKE      E  +++G + + +S++E G+    I +++ + +TL+  L    
Sbjct: 12 GNKIKGIRKEKGWKLGEFADKSGMSIAMLSKIENGRVIPTIPSLMQIINTLNLNLADFF 70


>gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 151

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 25/60 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R++R ++ +TQ+E+       +  +S  E   S  +++ +  + +     +    K
Sbjct: 11 GKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSEPDLNTLKKICYLFGVHMDDFAK 70


>gi|315221870|ref|ZP_07863782.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315189103|gb|EFU22806.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R++ KLTQ+E+ N+ G  +  I   E G+  I  D    LA      +  LL
Sbjct: 5  NRIKELRQKEKLTQEELANKIGVTKRTIIAWEKGERQIKQDKAQQLADYFGVSVRYLL 62


>gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei
          F0415]
 gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei
          F0415]
          Length = 137

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++RK+A  +Q+ +    G ++  +S+ E G+S  +I +   LA   +  L +L
Sbjct: 1  MINKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGESLPDIISSSRLAEIFEISLDEL 60

Query: 81 LK 82
          +K
Sbjct: 61 VK 62


>gi|307825930|ref|ZP_07656145.1| transcriptional regulator, XRE family [Methylobacter
          tundripaludum SV96]
 gi|307733049|gb|EFO03911.1| transcriptional regulator, XRE family [Methylobacter
          tundripaludum SV96]
          Length = 102

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELE----TGKSTINIDNMIILAHTLDTPL 77
           R+EA LTQ ++ +R G   S ++ LE    +GK + +ID +   A  +   L
Sbjct: 45 ARREAGLTQAQVADRMGTKASAVARLESALVSGKHSPSIDTLRKYAAAVGKKL 97


>gi|297544917|ref|YP_003677219.1| XRE family transcriptional regulator [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296842692|gb|ADH61208.1| transcriptional regulator, XRE family [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
          Length = 65

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+E+  + G  ++ I+ +E G+   ++     +A      +  + 
Sbjct: 3  NRLKVYRAMHDLTQEELATKLGVTRATINAIENGRYDPSLKLAFQIARFFKISIEDVF 60


>gi|268611043|ref|ZP_06144770.1| transcriptional regulator [Ruminococcus flavefaciens FD-1]
          Length = 78

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +RK+  LTQ ++      ++S + + ETG+    +D +  +A   D     L
Sbjct: 8  ICGKRIKALRKKNNLTQCQLAELLHMSRSTVLKYETGRQIPPVDRICDIADIFDVSTDYL 67


>gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles
          DSM 14600]
 gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles
          DSM 14600]
          Length = 327

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 32/63 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI  +   ++RK+   +Q+E+  +   ++  +S+ E  +S  +++ ++ L+         
Sbjct: 1  MILADKIIDLRKKNGWSQEELAEKLDVSRQSVSKWEGARSVPDMNKILRLSEVFAVSTDY 60

Query: 80 LLK 82
          LLK
Sbjct: 61 LLK 63


>gi|90420986|ref|ZP_01228890.1| possible transcriptional regulator [Aurantimonas manganoxydans
          SI85-9A1]
 gi|90334764|gb|EAS48540.1| possible transcriptional regulator [Aurantimonas manganoxydans
          SI85-9A1]
          Length = 132

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
          F    R  RKE  +TQ ++    G + +++S LE G+      D +  +   L+ 
Sbjct: 4  FGEKVRAFRKERGVTQSQMAAALGVSSAYLSALEHGRRGRPTWDLLQRIIGYLNV 58


>gi|145223513|ref|YP_001134191.1| Fis family transcriptional regulator [Mycobacterium gilvum
          PYR-GCK]
 gi|145215999|gb|ABP45403.1| transcriptional regulator, Fis family [Mycobacterium gilvum
          PYR-GCK]
          Length = 192

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNR----TGFAQSW--ISELET 56
          ++K D+  +          F    R  R++A L+Q+ +  R    TG       ++ +ET
Sbjct: 2  QQKSDDGQVQVPNSGTSRTFGEALRRAREQAGLSQRALAARLAEVTGLKLDHTALTRIET 61

Query: 57 GKSTINIDNMIILAHTLDTPLWKLLKP 83
           +    +     LA  L   L  L+ P
Sbjct: 62 DQREPKVIEARALAAALGVQLDDLVPP 88


>gi|15900264|ref|NP_344868.1| transcriptional regulator, putative [Streptococcus pneumoniae
          TIGR4]
 gi|15902345|ref|NP_357895.1| transcriptional regulator [Streptococcus pneumoniae R6]
 gi|111657195|ref|ZP_01407970.1| hypothetical protein SpneT_02001592 [Streptococcus pneumoniae
          TIGR4]
 gi|116515521|ref|YP_815820.1| transcriptional regulator, putative [Streptococcus pneumoniae
          D39]
 gi|148983739|ref|ZP_01817058.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71]
 gi|148988089|ref|ZP_01819552.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73]
 gi|148996747|ref|ZP_01824465.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70]
 gi|149013057|ref|ZP_01833923.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75]
 gi|149018025|ref|ZP_01834484.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72]
 gi|168484208|ref|ZP_02709160.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|168486615|ref|ZP_02711123.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00]
 gi|168490753|ref|ZP_02714896.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|168576734|ref|ZP_02722592.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|169833560|ref|YP_001693853.1| hypothetical protein SPH_0443 [Streptococcus pneumoniae
          Hungary19A-6]
 gi|194396813|ref|YP_002037017.1| transcriptional regulator [Streptococcus pneumoniae G54]
 gi|225853916|ref|YP_002735428.1| hypothetical protein SPJ_0326 [Streptococcus pneumoniae JJA]
 gi|225856074|ref|YP_002737585.1| hypothetical protein SPP_0367 [Streptococcus pneumoniae P1031]
 gi|225858186|ref|YP_002739696.1| hypothetical protein SP70585_0396 [Streptococcus pneumoniae
          70585]
 gi|298254745|ref|ZP_06978331.1| hypothetical protein SpneCM_03900 [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298502137|ref|YP_003724077.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259428|ref|ZP_07345405.1| hypothetical protein CGSSp9vBS293_07336 [Streptococcus pneumoniae
          SP-BS293]
 gi|303261183|ref|ZP_07347132.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae
          SP14-BS292]
 gi|303263510|ref|ZP_07349433.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae
          BS397]
 gi|303265803|ref|ZP_07351701.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae
          BS457]
 gi|303267766|ref|ZP_07353568.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae
          BS458]
 gi|307066993|ref|YP_003875959.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|307704192|ref|ZP_07641115.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|1536960|emb|CAB01931.1| yorfE [Streptococcus pneumoniae]
 gi|14971806|gb|AAK74508.1| putative transcriptional regulator [Streptococcus pneumoniae
          TIGR4]
 gi|15457855|gb|AAK99105.1| Transcription regulator [Streptococcus pneumoniae R6]
 gi|116076097|gb|ABJ53817.1| transcriptional regulator, putative [Streptococcus pneumoniae
          D39]
 gi|147757322|gb|EDK64361.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70]
 gi|147763092|gb|EDK70034.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75]
 gi|147923886|gb|EDK74998.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71]
 gi|147926553|gb|EDK77626.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73]
 gi|147931589|gb|EDK82567.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72]
 gi|168996062|gb|ACA36674.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172042565|gb|EDT50611.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00]
 gi|183570358|gb|EDT90886.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00]
 gi|183574941|gb|EDT95469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04]
 gi|183577574|gb|EDT98102.1| conserved domain protein [Streptococcus pneumoniae MLV-016]
 gi|194356480|gb|ACF54928.1| transcriptional regulator, putative [Streptococcus pneumoniae
          G54]
 gi|225720654|gb|ACO16508.1| conserved domain protein [Streptococcus pneumoniae 70585]
 gi|225723727|gb|ACO19580.1| conserved domain protein [Streptococcus pneumoniae JJA]
 gi|225726347|gb|ACO22199.1| conserved domain protein [Streptococcus pneumoniae P1031]
 gi|298237732|gb|ADI68863.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301793585|emb|CBW35962.1| putative DNA-binding protein [Streptococcus pneumoniae INV104]
 gi|301799462|emb|CBW32002.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141]
 gi|301801258|emb|CBW33933.1| putative DNA-binding protein [Streptococcus pneumoniae INV200]
 gi|302638020|gb|EFL68506.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae
          SP14-BS292]
 gi|302639362|gb|EFL69820.1| hypothetical protein CGSSpBS293_07336 [Streptococcus pneumoniae
          SP-BS293]
 gi|302642462|gb|EFL72807.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae
          BS458]
 gi|302644711|gb|EFL74960.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae
          BS457]
 gi|302647283|gb|EFL77507.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae
          BS397]
 gi|306408530|gb|ADM83957.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|307622223|gb|EFO01237.1| helix-turn-helix family protein [Streptococcus mitis SK597]
 gi|332077619|gb|EGI88080.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA41301]
 gi|332203500|gb|EGJ17567.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47368]
 gi|332204335|gb|EGJ18400.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE  ++Q E+    G ++  I+ +E  K    ++  + LA +L T L  L 
Sbjct: 2  NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59


>gi|320547844|ref|ZP_08042128.1| cro/CI family transcriptional regulator [Streptococcus equinus
          ATCC 9812]
 gi|320447604|gb|EFW88363.1| cro/CI family transcriptional regulator [Streptococcus equinus
          ATCC 9812]
          Length = 65

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + +RK  K++Q E+    G  +  I  LE G+   +++    +A      + ++ 
Sbjct: 4  KIQELRKANKVSQAELAEALGVTRQTIISLEKGRYNASLELAHKIAKYFGMTIEEIF 60


>gi|302548836|ref|ZP_07301178.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
 gi|302466454|gb|EFL29547.1| regulatory protein [Streptomyces viridochromogenes DSM 40736]
          Length = 282

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R       R +R EA L  K+I ++ G+  S +S L+ GK T    ++   A+ +  
Sbjct: 6  QTAREALGARLRELRAEAGLEGKDIASKVGWQTSKVSRLQNGKQTPTRADLTAWANAVGR 65

Query: 76 P 76
          P
Sbjct: 66 P 66


>gi|237734694|ref|ZP_04565175.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382022|gb|EEO32113.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK  + TQ+EI  + G ++  +++ E+G+S  +ID+ + LA   +  +  L
Sbjct: 1  MLSTNLVWLRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNL 60

Query: 81 L 81
          +
Sbjct: 61 I 61


>gi|227872629|ref|ZP_03990961.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227841516|gb|EEJ51814.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 33 AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            +TQK++ N+TG  QS IS+LE G    +I  +  LA  +D  L
Sbjct: 40 KNMTQKDLSNKTGINQSEISKLENGTRNPSIKLLQRLAEGMDMVL 84


>gi|169344650|ref|ZP_02865615.1| LexA repressor [Clostridium perfringens C str. JGS1495]
 gi|169297260|gb|EDS79372.1| LexA repressor [Clostridium perfringens C str. JGS1495]
          Length = 365

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ RK+ K++Q++   +   A+S +S  E  KS   I  ++ ++  ++  + +LL
Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69


>gi|167760985|ref|ZP_02433112.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC
          35704]
 gi|167661364|gb|EDS05494.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC
          35704]
          Length = 166

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +RK    +Q+EI  +   ++    + E+G++  +I+   +LA      +  L
Sbjct: 18 LLKENLIMLRKLKGFSQEEIAEKIDISRQAYGKWESGETIPDIEKCALLAEVYGITIDSL 77

Query: 81 LK 82
          ++
Sbjct: 78 IR 79


>gi|187250867|ref|YP_001875349.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidases) [Elusimicrobium minutum Pei191]
 gi|186971027|gb|ACC98012.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidases) [Elusimicrobium minutum Pei191]
          Length = 214

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          M         R+E  LTQKE+  + G   S I+  ET   + +  N+  L+  L   
Sbjct: 1  MSIGKKILQARRELNLTQKELAQKIGLPGSTIARWETDSFSPSPKNIEKLSKALGRE 57


>gi|152994012|ref|YP_001359733.1| XRE family transcriptional regulator [Sulfurovum sp. NBC37-1]
 gi|151425873|dbj|BAF73376.1| transcriptional regulator, Xre family [Sulfurovum sp. NBC37-1]
          Length = 81

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETG--KSTINIDNMIILAHTLDTPLWK 79
            N R IRKE  +TQ ++    G  + S I ++E G      NI+++  +A  LD  + +
Sbjct: 19 ATNIRKIRKEKGITQLDLALTIGHKSMSTIGKIEAGLEDKHYNIEHLYKIAKALDVDICE 78

Query: 80 LL 81
            
Sbjct: 79 FF 80


>gi|146276862|ref|YP_001167021.1| XRE family transcriptional regulator [Rhodobacter sphaeroides
          ATCC 17025]
 gi|145555103|gb|ABP69716.1| putative transcriptional regulator, XRE family [Rhodobacter
          sphaeroides ATCC 17025]
          Length = 85

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          R+   +TQ ++  + G  QS I+ +E+G+  I++   I +   L     + L+
Sbjct: 21 RRSRGMTQAQLAQKLGCQQSLIARIESGQRRIDVLEFIAIFRALGVEPHEALQ 73


>gi|152995207|ref|YP_001340042.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836131|gb|ABR70107.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1]
          Length = 508

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRT-------GFAQSWISELETGKSTINIDNMIIL 69
          R+        RN+RK  +LT +++  R          + S++S +E GK   + D + ++
Sbjct: 9  RKAHFLGTKIRNLRKRNRLTMEDLSARCIKVDAESAPSVSYLSMIERGKRIPSEDVLEVI 68

Query: 70 AHTLDT 75
          A     
Sbjct: 69 ASVFQK 74


>gi|83594572|ref|YP_428324.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC
          11170]
 gi|83577486|gb|ABC24037.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC
          11170]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M  R+      +  I           R  R    L Q+ +  R G +   I + E G++ 
Sbjct: 1  MNGRETMPESDTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNR 60

Query: 61 INIDNMIILAHTLDTPL 77
          I+   +  +A  L  P+
Sbjct: 61 ISASRLYDIAKALAVPI 77


>gi|325569193|ref|ZP_08145398.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus ATCC 12755]
 gi|325157442|gb|EGC69602.1| cro/CI family transcriptional regulator [Enterococcus
          casseliflavus ATCC 12755]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + + V  F   RK+A  +Q+E+    G   Q+ +S+ E      ++  +I L + +  PL
Sbjct: 5  KAMNVERFIEARKQAGFSQQELSE--GICTQATLSKFENNGQAPSLKILIKLCNRIGLPL 62

Query: 78 WKLL 81
            L 
Sbjct: 63 VDLF 66


>gi|323705548|ref|ZP_08117122.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
 gi|323535025|gb|EGB24802.1| helix-turn-helix domain protein [Thermoanaerobacterium
          xylanolyticum LX-11]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ RK+  L Q +I     F++ +IS +E GK   ++  +  +A  L+ PL   L
Sbjct: 6  LGKKIRDERKKLLLKQGDISGD-EFSKGYISLIEKGKINPSLKALDFIAKKLNKPLVYFL 64


>gi|295105803|emb|CBL03346.1| Predicted transcriptional regulators [Gordonibacter pamelaeae
          7-10-1-b]
          Length = 67

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK   + Q+++    G ++  IS LE G+   +I     +A   D  +  + 
Sbjct: 3  NRLEEIRKARGIKQEDLATELGVSRQTISSLEKGRYNPSILLAFKIARHFDLSIEDVF 60


>gi|284048461|ref|YP_003398800.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
 gi|283952682|gb|ADB47485.1| transcriptional regulator, XRE family [Acidaminococcus fermentans
          DSM 20731]
          Length = 80

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 27/58 (46%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R++R+  K+ Q ++       +  IS +E GK   ++   + +AH    P+  + +
Sbjct: 7  KIRDLRRIHKMQQSDLAKLVHVRRETISNIENGKYNPSLKLALDIAHVFGKPVEDIFE 64


>gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC
          49175]
 gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC
          49175]
          Length = 166

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                N+RKE   +Q+ +  +   ++  IS+ E+G++   I+ +I L+         LL
Sbjct: 4  LAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAVPEIEKIIELSTIFQVTTDYLL 63


>gi|317046283|ref|YP_004113931.1| hypothetical protein Pat9b_0045 [Pantoea sp. At-9b]
 gi|316947900|gb|ADU67375.1| protein of unknown function DUF955 [Pantoea sp. At-9b]
          Length = 361

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RK   L+QKE+      +Q  +S++E G      D +  +A+ L+ P
Sbjct: 19 RKMLGLSQKELAQIIAISQGTLSKIEQGLKPATDDQIENIANALNCP 65


>gi|257875059|ref|ZP_05654712.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257809225|gb|EEV38045.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + + V  F   RK+A  +Q+E+    G   Q+ +S+ E      ++  +I L + +  PL
Sbjct: 5  KAMNVERFIEARKQAGFSQQELSE--GICTQATLSKFENNGQAPSLKILIKLCNRIGLPL 62

Query: 78 WKLL 81
            L 
Sbjct: 63 VDLF 66


>gi|229170554|ref|ZP_04298202.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621]
 gi|228612903|gb|EEK70080.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621]
          Length = 69

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  +  +  + 
Sbjct: 13 RAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANIFEKSITDVF 64


>gi|254510337|ref|ZP_05122404.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
 gi|221534048|gb|EEE37036.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium
          KLH11]
          Length = 466

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R    LTQK+   + G +  +++++E     I+   ++ LA      
Sbjct: 3  TQKLYAGAKLREMRTRLTLTQKDFATKLGISLPYLNQMENNNRPISTTVVLALAQEFGMD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|167628057|ref|YP_001678557.1| XRE family transcriptional regulator [Francisella philomiragia
          subsp. philomiragia ATCC 25017]
 gi|167598058|gb|ABZ88056.1| putative transcriptional regulator, XRE family [Francisella
          philomiragia subsp. philomiragia ATCC 25017]
          Length = 96

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          N   N+RK++ LTQ++I  R G ++S +S LE       I+ +   A    
Sbjct: 31 NTLINMRKKSGLTQEQIAERMGTSRSNVSRLERLSVYPTINTLEKYAEACG 81


>gi|160916079|ref|ZP_02078286.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991]
 gi|158431803|gb|EDP10092.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R++ K++Q+E+  +   ++  IS  ET KS  +I ++I L++  +  L   +K
Sbjct: 4  GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNFIK 63


>gi|153814064|ref|ZP_01966732.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC
          27756]
 gi|317499821|ref|ZP_07958059.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|331087904|ref|ZP_08336828.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|145848460|gb|EDK25378.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC
          27756]
 gi|316898723|gb|EFV20756.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|330409391|gb|EGG88837.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 194

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R++ K++Q+E+  +   ++  IS  ET KS  +I ++I L++  +  L   +K
Sbjct: 4  GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDNFIK 63


>gi|91785547|ref|YP_560753.1| hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400]
 gi|91689501|gb|ABE32701.1| Hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400]
          Length = 161

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%)

Query: 11  LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +  ++L    +   N + +R+       ++  RT    +++S LETGK    +  ++ LA
Sbjct: 83  IPSSLLDAPTLVALNVKRLRRAKDWNAADLAERTLMKAAYVSLLETGKCGCTLRTLLRLA 142

Query: 71  HTLDTPLWKLLK 82
                 + +LL 
Sbjct: 143 AGFQVDVVQLLT 154



 Score = 40.8 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 7/60 (11%), Positives = 22/60 (36%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R+   L+   +  +    +  +  +E  +   ++  +  +A+  D  + +L 
Sbjct: 17 LAERIRCARELFDLSLHALSEKAQVDRKSLRSIEAAEFNPSVKTLERIANAFDMTIAELF 76


>gi|39653689|ref|NP_945254.1| transcriptional regulator [Streptococcus phage EJ-1]
 gi|38638857|emb|CAE82097.1| transcriptional regulator [Streptococcus phage EJ-1]
          Length = 58

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            F+++  E  +TQK +  + G + + I  ++T +  I+  NM  +A  L   + +L
Sbjct: 3  KKFKHLLIEKGMTQKALAEKAGISPNTIRTIKTER--ISFKNMCKIADALGISIDEL 57


>gi|86141620|ref|ZP_01060166.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis
          MED217]
 gi|85832179|gb|EAQ50634.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis
          MED217]
          Length = 193

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R IRKE  LT   + +    +   IS +E G++  ++  ++ +   LDT 
Sbjct: 9  GKRIREIRKEKGLTINTVASSAEVSNGLISRVENGRTIPSLPVLLNIIAALDTE 62


>gi|283479895|emb|CAY75811.1| putative HTH-type transcriptional regulatory protein Memar_2347
          [Erwinia pyrifoliae DSM 12163]
 gi|283479904|emb|CAY75820.1| putative HTH-type transcriptional regulatory protein Memar_2347
          [Erwinia pyrifoliae DSM 12163]
          Length = 142

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                    RKE +LTQ ++  + G AQ  ++  E GK  ++   +  LA  L+  L +
Sbjct: 34 KQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVSAALLPQLAQILNLSLDE 93

Query: 80 LL 81
          LL
Sbjct: 94 LL 95


>gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM
          13479]
 gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM
          13479]
          Length = 195

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                  RKE  LTQ+++ +  G +   +S+ E G    ++     L+  L   + KLL
Sbjct: 6  VGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLGCPDVSLWEGLSTVLGADIIKLL 65

Query: 82 K 82
          +
Sbjct: 66 Q 66


>gi|259503754|ref|ZP_05746656.1| DNA-binding protein [Lactobacillus antri DSM 16041]
 gi|259168270|gb|EEW52765.1| DNA-binding protein [Lactobacillus antri DSM 16041]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R++ + TQ  +      ++  IS+ E G +  +ID ++ +++  D  L  
Sbjct: 1  MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|225405836|ref|ZP_03761025.1| hypothetical protein CLOSTASPAR_05057 [Clostridium asparagiforme
          DSM 15981]
 gi|225042650|gb|EEG52896.1| hypothetical protein CLOSTASPAR_05057 [Clostridium asparagiforme
          DSM 15981]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              IR+   +T +++  ++G +++ I+ +E       I  M +L+  LD  L  L 
Sbjct: 8  RVYEIRRIKNMTLRDLSIKSGISRTEINNIENNLKDPTIRTMCLLSLALDVSLQDLF 64


>gi|254428879|ref|ZP_05042586.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881]
 gi|196195048|gb|EDX90007.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881]
          Length = 119

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    +  R    +TQ+++       +S IS  E G+ +     +  L   L   L  
Sbjct: 11 MSFPERLKAARLALGMTQEQLGFELEVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDH 70

Query: 80 LL 81
          L+
Sbjct: 71 LI 72


>gi|154498637|ref|ZP_02037015.1| hypothetical protein BACCAP_02627 [Bacteroides capillosus ATCC
          29799]
 gi|150272376|gb|EDM99570.1| hypothetical protein BACCAP_02627 [Bacteroides capillosus ATCC
          29799]
          Length = 102

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+  F+     +R    ++ +++    G + S+I+ +ETG S  ++     +   L    
Sbjct: 2  EQADFIKRLVELRMNKGVSARDMSLSIGQSSSYINNIETGVSFPSMTVFFYICDFLGVSP 61

Query: 78 WKLL 81
           +  
Sbjct: 62 MEFF 65


>gi|315222885|ref|ZP_07864765.1| helix-turn-helix protein [Streptococcus anginosus F0211]
 gi|315188024|gb|EFU21759.1| helix-turn-helix protein [Streptococcus anginosus F0211]
          Length = 116

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R       R +R E  +TQ+++  R     +++ +LE     + I+ +  +   L+ 
Sbjct: 13 RDYIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEV 69


>gi|320107567|ref|YP_004183157.1| helix-turn-helix domain-containing protein [Terriglobus saanensis
          SP1PR4]
 gi|319926088|gb|ADV83163.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 23/60 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R++A L+Q +     G  +  ISE+ET    ++   +   A         LL
Sbjct: 10 LGQRLRQAREDAGLSQAQAAKLLGLHRPAISEIETEGRKVSAGELKNFASLYHVSTAWLL 69


>gi|325068439|ref|ZP_08127112.1| XRE family transcriptional regulator [Actinomyces oris K20]
 gi|326773690|ref|ZP_08232973.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505]
 gi|326636920|gb|EGE37823.1| hypothetical protein HMPREF0059_02094 [Actinomyces viscosus C505]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 7   DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
           D P   + +L  R       R +R+    T +E+ ++   +  ++SE+E G+   + + +
Sbjct: 32  DTPKHENVVL--RREIGEVLRGVRQHQGRTLREVSSQARVSLGYLSEVERGQKEASSELL 89

Query: 67  IILAHTLDTPLWKLLK 82
             +   LD PL  +L+
Sbjct: 90  ASICQALDAPLSMVLR 105


>gi|303326712|ref|ZP_07357154.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302862700|gb|EFL85632.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
            RK    +Q+ + +R G  QS++S+ E G+  ++I     +A  L     
Sbjct: 20 QARKSQGFSQQYVADRLGKPQSFVSKYENGERRLDILEFFAIAEALQKDPV 70


>gi|291515460|emb|CBK64670.1| Helix-turn-helix [Alistipes shahii WAL 8301]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 23/42 (54%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +TQK +  +   +Q +IS++  G+  ++++ +  +   LD 
Sbjct: 42 GMTQKALAMKMNCSQQYISKVLKGRENLSLETLCKIEKALDV 83


>gi|289644973|ref|ZP_06477012.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
 gi|289505209|gb|EFD26269.1| transcriptional regulator, XRE family [Frankia symbiont of
          Datisca glomerata]
          Length = 74

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R E + +Q ++ +R   ++  I+ +ETG+   ++     LA      + ++ 
Sbjct: 3  NRLRVLRAERRWSQADLADRCRVSRQTINAIETGRYDPSLPLAFTLADIFGLAIEEIF 60


>gi|206559307|ref|YP_002230068.1| putative DNA binding protein [Burkholderia cenocepacia J2315]
 gi|198035345|emb|CAR51220.1| putative DNA binding protein [Burkholderia cenocepacia J2315]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|168216166|ref|ZP_02641791.1| transcriptional regulator, XRE family [Clostridium perfringens
          NCTC 8239]
 gi|182381613|gb|EDT79092.1| transcriptional regulator, XRE family [Clostridium perfringens
          NCTC 8239]
          Length = 144

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTL 73
          F       R E  ++ +E+  + G + S++S++E G+    N + +  ++  L
Sbjct: 3  FGEYINKKRLEKGMSLRELAGKIGISPSYLSDIEKGRRNAPNNEKIEKISEVL 55


>gi|149001557|ref|ZP_01826530.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP14-BS69]
 gi|149006084|ref|ZP_01829813.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74]
 gi|168490030|ref|ZP_02714229.1| conserved domain protein [Streptococcus pneumoniae SP195]
 gi|168494685|ref|ZP_02718828.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|182683306|ref|YP_001835053.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
 gi|221231212|ref|YP_002510364.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669]
 gi|237649376|ref|ZP_04523628.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974]
 gi|237821593|ref|ZP_04597438.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI
          1974M2]
 gi|298230655|ref|ZP_06964336.1| putative DNA-binding protein [Streptococcus pneumoniae str.
          Canada MDR_19F]
 gi|147760015|gb|EDK67004.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP14-BS69]
 gi|147762440|gb|EDK69401.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74]
 gi|182628640|gb|ACB89588.1| transcriptional regulator, putative [Streptococcus pneumoniae
          CGSP14]
 gi|183571579|gb|EDT92107.1| conserved domain protein [Streptococcus pneumoniae SP195]
 gi|183575410|gb|EDT95938.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06]
 gi|220673672|emb|CAR68163.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC
          700669]
 gi|327390749|gb|EGE89089.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA04375]
 gi|332075179|gb|EGI85649.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17570]
 gi|332076774|gb|EGI87236.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17545]
          Length = 64

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RKE  ++Q E+    G ++  I+ +E  K    ++  + LA +L T L  L 
Sbjct: 2  NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLF 59


>gi|158320706|ref|YP_001513213.1| XRE family transcriptional regulator [Alkaliphilus oremlandii
          OhILAs]
 gi|158140905|gb|ABW19217.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii
          OhILAs]
          Length = 232

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +  R +AKLT+KE+  + G   ++I ++E+GK  +N      + + L   L
Sbjct: 4  VAEKIKEARMKAKLTEKELAKKCGLTANYIIQIESGKRVVNEKLAESILNVLGEKL 59


>gi|66046048|ref|YP_235889.1| peptidase [Pseudomonas syringae pv. syringae B728a]
 gi|63256755|gb|AAY37851.1| Helix-turn-helix motif:Peptidase S24, S26A and S26B [Pseudomonas
          syringae pv. syringae B728a]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               +  R  AK+TQ+++    G  Q  IS++E+GK+  +  +++ LA     
Sbjct: 4  LAQRLKLARAHAKITQRKLAELAGVEQPAISQMESGKTLKSA-HLVALAKACGV 56


>gi|15616111|ref|NP_244416.1| immunity repressor protein (phage-related protein) [Bacillus
          halodurans C-125]
 gi|10176173|dbj|BAB07268.1| immunity repressor protein (phage-related protein) [Bacillus
          halodurans C-125]
          Length = 154

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76
          E   F +  R +RK+   T  ++   +G + + IS +E G       + +  L+  L  P
Sbjct: 2  EGKQFGSFIRALRKKKGFTVNQLALYSGVSSAQISRIENGLRGVPKPETIKKLSEALGHP 61

Query: 77 LWKLLK 82
             L++
Sbjct: 62 YEDLMQ 67


>gi|115352794|ref|YP_774633.1| XRE family transcriptional regulator [Burkholderia ambifaria
          AMMD]
 gi|115282782|gb|ABI88299.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          AMMD]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|319649464|ref|ZP_08003620.1| hypothetical protein HMPREF1013_00224 [Bacillus sp. 2_A_57_CT2]
 gi|317398626|gb|EFV79308.1| hypothetical protein HMPREF1013_00224 [Bacillus sp. 2_A_57_CT2]
          Length = 72

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R +  LTQ+E+   +  ++S+ + +E G  T +++    +A TL    W L 
Sbjct: 5  LKTQRNKRNLTQEEVAKLSDISRSFYTHIEAGTKTPSVEVAKKIAKTLGFE-WTLF 59


>gi|302061586|ref|ZP_07253127.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. tomato K40]
          Length = 117

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER+      R  R+   L+Q EI    G  ++ I+ +E+G   +    +  L+      +
Sbjct: 10 ERLQIAERLRTAREYLGLSQAEIAQLVGLTRTAITGIESGARKVEATELKRLSSIYRRSV 69

Query: 78 WKLLK 82
            LL 
Sbjct: 70 EYLLT 74


>gi|300174134|ref|YP_003773300.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG
          18811]
 gi|299888513|emb|CBL92481.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG
          18811]
          Length = 156

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R    LTQ++I +     +  +S  E G S  +I  ++ L+      + ++L
Sbjct: 3  FGQKLQTARMNMNLTQQKIADDFFITRQTVSSWENGNSYPDIMTLLKLSDYFGFSIDEIL 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|269202476|ref|YP_003281745.1| putative phage repressor [Staphylococcus aureus subsp. aureus
          ED98]
 gi|262074766|gb|ACY10739.1| putative phage repressor [Staphylococcus aureus subsp. aureus
          ED98]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57


>gi|255324666|ref|ZP_05365780.1| transcriptional regulator, XRE family [Corynebacterium
          tuberculostearicum SK141]
 gi|255298141|gb|EET77444.1| transcriptional regulator, XRE family [Corynebacterium
          tuberculostearicum SK141]
          Length = 86

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PR K+ +P   +A++   +     F   R+E  + Q+++ +  G ++S +  +E G + +
Sbjct: 7  PRHKQGKPAGDNAVI---LGLGAQFAERRRELGILQQQLADAAGISRSTLHTIEHGGAGV 63

Query: 62 NIDNMIILAHTLDTPL 77
            + +  +A  L   +
Sbjct: 64 RWEKITAVAEALGLEM 79


>gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM
          16069]
 gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM
          16069]
          Length = 70

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R  R E +++Q E+    G ++  IS +E GK   +    + +A     P+ ++ 
Sbjct: 7  NRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFVPSTIIALKIAEYFKVPVEEVF 64


>gi|227111558|ref|ZP_03825214.1| regulator of pectin lyase production [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
          Length = 244

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          +       +  R    L+QK + +  G +Q+ I ++E GK++     ++ L+++L   P 
Sbjct: 2  KTTLAERLKTARTAQGLSQKALGDMIGVSQAAIQKIEVGKASQTT-KIVELSNSLHVRPE 60

Query: 78 W 78
          W
Sbjct: 61 W 61


>gi|210634400|ref|ZP_03298102.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM
          13279]
 gi|210158825|gb|EEA89796.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM
          13279]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             + +  RKE  L+Q ++  +   ++  IS  E G++  ++ ++++L++     +  L+
Sbjct: 3  LGAHIKEHRKELGLSQDDLAAKIYVSRQTISNWEVGRTYPDVQSLLLLSNVFGVTVDSLI 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|189499530|ref|YP_001959000.1| transcriptional regulator, XRE family [Chlorobium
          phaeobacteroides BS1]
 gi|189494971|gb|ACE03519.1| transcriptional regulator, XRE family [Chlorobium
          phaeobacteroides BS1]
          Length = 89

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ER    N     R +A LTQ E+  R G  Q+ IS+ E G+ T + +    L+  L    
Sbjct: 14 ERNRIGNLLSGARLKAGLTQTELAKRLGVRQNMISDYENGRRTYSDEMAGRLSKVLKVKE 73

Query: 78 WKL 80
           +L
Sbjct: 74 ERL 76


>gi|108803015|ref|YP_642952.1| XRE family transcriptional regulator [Rubrobacter xylanophilus
          DSM 9941]
 gi|108764258|gb|ABG03140.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus
          DSM 9941]
          Length = 77

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R++R  A ++Q+E+  R+G A+  IS+LETGK       +  LA  L+     L+
Sbjct: 6  LRDLRLRAVMSQEELARRSGVARDTISKLETGKRRAYPSTVRKLAEGLEVEPQALV 61


>gi|21218451|ref|NP_632000.1| hypothetical protein pLP9000_09 [Lactobacillus plantarum]
 gi|20853812|gb|AAM26929.1| unknown [Lactobacillus plantarum]
          Length = 112

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R++ + TQ  +      ++  IS+ E G +  +ID ++ +++  D  L  
Sbjct: 1  MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60

Query: 80 LLK 82
          L+K
Sbjct: 61 LIK 63


>gi|186684878|ref|YP_001868074.1| helix-turn-helix domain-containing protein [Nostoc punctiforme
          PCC 73102]
 gi|186467330|gb|ACC83131.1| helix-turn-helix domain protein [Nostoc punctiforme PCC 73102]
          Length = 82

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          F       RK AKLTQ E+  +    QS++S+ E G+  +++   + +A  L+   
Sbjct: 13 FRQLLIEARKAAKLTQAELSAKLKLPQSYVSKYERGERRLDVIKFLQVAQVLEIDP 68


>gi|329998016|ref|ZP_08302983.1| cupin domain protein [Klebsiella sp. MS 92-3]
 gi|328538834|gb|EGF64903.1| cupin domain protein [Klebsiella sp. MS 92-3]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          SD     R +     +  RK  K++  E+  R   ++  + E+E   +  +I  +  LA 
Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71

Query: 72 TLDTPLWKLL 81
           L   +  ++
Sbjct: 72 ALGVSVADIV 81


>gi|296392464|ref|YP_003657348.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296179611|gb|ADG96517.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 97

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D     +  L+ R++        R EA L Q ++  RTG +   I   E G ++     +
Sbjct: 6  DSGTSPEISLKYRLLIA------RMEAGLEQSQLAERTGISVRTIRNAERGHTSPKQHVI 59

Query: 67 IILAHTLDTPLWKLLK 82
             A     P   LL 
Sbjct: 60 YQWALATGVPATWLLT 75


>gi|269126771|ref|YP_003300141.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268311729|gb|ACY98103.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 269

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRT----GFAQSWISELETG 57
          PRR+R        +    + F    R  R+EA LTQ+ +  R     G    ++ ++E+G
Sbjct: 3  PRRRRS------TVSPMLLAFGRQLRRYREEAGLTQESLGRRANNGRGVTSQYVGQVESG 56

Query: 58 KSTIN 62
          ++   
Sbjct: 57 RTRCT 61


>gi|260596321|ref|YP_003208892.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032]
 gi|260215498|emb|CBA27640.1| hypothetical protein CTU_05290 [Cronobacter turicensis z3032]
          Length = 103

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F    +  R+   L+QK++    G     A + I+  E G    +I+    LA  L  P
Sbjct: 10 VFCKRLKTAREAKGLSQKKLGILAGIDEFVASARINRYEKGVHQASIEIARKLADALAVP 69

Query: 77 L 77
          L
Sbjct: 70 L 70


>gi|289579293|ref|YP_003477920.1| helix-turn-helix domain protein [Thermoanaerobacter italicus Ab9]
 gi|289529006|gb|ADD03358.1| helix-turn-helix domain protein [Thermoanaerobacter italicus Ab9]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L Q ++     F++ +IS +E GK + ++  +  +A  L+ P+   L
Sbjct: 6  LGRRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64


>gi|238896610|ref|YP_002921355.1| putative regulator with helix-turn-helix motif [Klebsiella
          pneumoniae NTUH-K2044]
 gi|238548937|dbj|BAH65288.1| putative regulator with helix-turn-helix motif [Klebsiella
          pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          SD     R +     +  RK  K++  E+  R   ++  + E+E   +  +I  +  LA 
Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71

Query: 72 TLDTPLWKLL 81
           L   +  ++
Sbjct: 72 ALGVSVADIV 81


>gi|194015377|ref|ZP_03053993.1| YvaO [Bacillus pumilus ATCC 7061]
 gi|194012781|gb|EDW22347.1| YvaO [Bacillus pumilus ATCC 7061]
          Length = 133

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTPLWKL 80
          F    R +R+E KL+  ++   +  + + IS +E GK        +  LA  L  P  ++
Sbjct: 3  FGAYLRALREEKKLSVNQLAMYSEVSAAGISRIENGKRGIPKPPTIKKLAGALKVPYEEM 62

Query: 81 LK 82
          ++
Sbjct: 63 MQ 64


>gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae
          BRL-230010]
          Length = 123

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +F    R +R +   +Q+E   + G  ++ I+  E+G++T     +  +A   +T   
Sbjct: 6  KEVFKTRLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTD 65

Query: 79 KLL 81
           LL
Sbjct: 66 YLL 68


>gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223]
 gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK   LTQ ++  + G +   IS+ E+G ++   +N+  LA  L      
Sbjct: 2  KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61

Query: 80 LL 81
          L+
Sbjct: 62 LM 63


>gi|77458352|ref|YP_347857.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1]
 gi|77382355|gb|ABA73868.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  + +R+  KL+Q+E+  R+G   + IS +E  + + ++ ++  L   +   L     
Sbjct: 4  GSRLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSVSSLKKLLEGIPMSLADFFT 63


>gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155]
 gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK   LTQ ++  + G +   IS+ E+G ++   +N+  LA  L      
Sbjct: 2  KTLGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDW 61

Query: 80 LL 81
          L+
Sbjct: 62 LM 63


>gi|319897089|ref|YP_004135284.1| hypothetical protein HIBPF08050 [Haemophilus influenzae F3031]
 gi|317432593|emb|CBY80953.1| conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 127

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  +L+Q++I  +   + S  +++E G++ +  D ++ +A   +  L +L+
Sbjct: 6  KIRMMRELRQLSQEDIAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNMNLSELV 62


>gi|315443841|ref|YP_004076720.1| transcriptional regulator [Mycobacterium sp. Spyr1]
 gi|315262144|gb|ADT98885.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1]
          Length = 195

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 34 KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +T +++  R+    S +S LE+GK  + +D++  LA  L     +LL+
Sbjct: 26 GMTLEDVATRSSIDISTLSRLESGKRRLALDHLPRLAGALSVSTDELLR 74


>gi|299133379|ref|ZP_07026574.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
 gi|298593516|gb|EFI53716.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2]
          Length = 136

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 26/72 (36%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
           +           +  R  R    L+Q+++ +  G     I + E G + I    +  +A
Sbjct: 2  SAKTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIA 61

Query: 71 HTLDTPLWKLLK 82
            L  P+  L +
Sbjct: 62 DILQVPVSFLFE 73


>gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758]
 gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758]
          Length = 319

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +RKE  LTQ+++      +   IS  ETG +  ++  +I +A   +  + ++L
Sbjct: 7  GEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTNMPDLSILIKMAEFYNVEVKEIL 65


>gi|183597719|ref|ZP_02959212.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC
          25827]
 gi|188022996|gb|EDU61036.1| hypothetical protein PROSTU_01017 [Providencia stuartii ATCC
          25827]
          Length = 93

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              ++ R+   LT  E+  +   +Q  IS  E G + I  D +IIL + L+ 
Sbjct: 14 GRMLKSYRRRTGLTGSELAKKINVSQQQISRYENGINNITFDKLIILFNALEM 66


>gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174]
 gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174]
          Length = 124

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R  RK+  L+Q+ +  RTG   + I + E G     ++ +  +A  L+  + + L
Sbjct: 31 EKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISVIEFL 88


>gi|123442353|ref|YP_001006332.1| putative DNA-binding phage-related protein [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|332161719|ref|YP_004298296.1| putative DNA-binding phage-related protein [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
 gi|122089314|emb|CAL12161.1| putative DNA-binding phage-related protein [Yersinia
          enterocolitica subsp. enterocolitica 8081]
 gi|318605784|emb|CBY27282.1| putative DNA-binding phage-related protein [Yersinia
          enterocolitica subsp. palearctica Y11]
 gi|325665949|gb|ADZ42593.1| putative DNA-binding phage-related protein [Yersinia
          enterocolitica subsp. palearctica 105.5R(r)]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R+   LTQ++I  R G  +  IS +E G  + N+  +   A  L 
Sbjct: 35 RQAMMTELKAARQRCNLTQEDIARRAGLRKQNISRMEKGIISPNLTTLSRYAAALG 90


>gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009]
 gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              +  ++ RK   L+Q+E+  + G  ++ IS  E G  +     +I L+   D  +  
Sbjct: 8  KYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAIDD 67

Query: 80 LL 81
            
Sbjct: 68 FF 69


>gi|322419229|ref|YP_004198452.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18]
 gi|320125616|gb|ADW13176.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18]
          Length = 187

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R   KLT + +   TGF+ + IS++E    +  I  +  +A   D  L +  
Sbjct: 7  GPRLKKLRLARKLTLQAVATETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 65


>gi|271969939|ref|YP_003344135.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270513114|gb|ACZ91392.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 414

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAHTL 73
                      R  RK A +TQ E+  R   AQSW+S +E     + +I  +  LA TL
Sbjct: 11 SDPAAESVGTRVRRARKRAGITQSELARRVKRAQSWVSGIENDSIPLDSIALINTLARTL 70

Query: 74 DTPLWKL 80
               +L
Sbjct: 71 RVHPNEL 77


>gi|296139142|ref|YP_003646385.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296027276|gb|ADG78046.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 203

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 24/46 (52%)

Query: 36 TQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          T  ++ +  G  + ++S++E G +  ++  +I L   L+ P+  L 
Sbjct: 33 TLAQVADGVGLTKGYLSKVERGLAAPSVGTLIKLCEILEVPVGSLF 78


>gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196]
          Length = 63

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R++R E   +Q ++    G ++  ++ +ETG+   ++     LA     P+ K+ 
Sbjct: 3  NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFDPSLPLAFKLARLFGEPIEKIF 60


>gi|196251088|ref|ZP_03149768.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|196209382|gb|EDY04161.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 46

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          M      +  R EA L+Q+++  + G ++S +++ E+GK   +IDN
Sbjct: 1  MTLGEKIKKARTEAGLSQEQLSEKLGVSRSAVAKWESGKGLPDIDN 46


>gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
          Length = 468

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 23/55 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R++  ++Q E+      + S+++++E     + +  ++ L        
Sbjct: 7  GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDP 61


>gi|118588013|ref|ZP_01545423.1| transcriptional regulator, XRE family with cupin sensor domain
          [Stappia aggregata IAM 12614]
 gi|118439635|gb|EAV46266.1| transcriptional regulator, XRE family with cupin sensor domain
          [Stappia aggregata IAM 12614]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 27/56 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R  R++  LT +++ + +  +  ++S++E   +T  + ++  +A  L   L
Sbjct: 16 VGALIRARRRQLGLTLQQLGDASNLSVGYLSQVERDHATPTLGSLAGIARALGVGL 71


>gi|332365977|gb|EGJ43733.1| transcriptional regulator [Streptococcus sanguinis SK1059]
          Length = 92

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R    L Q E+    G ++  IS +E G+ T +I   + +AH  +  +  + +
Sbjct: 28 NRLKELRARDGLNQTELAKLAGVSRQTISLIERGEYTPSIVIALKIAHIFNENVENVFR 86


>gi|329118986|ref|ZP_08247680.1| XRE family transcriptional regulator [Neisseria bacilliformis
          ATCC BAA-1200]
 gi|327464859|gb|EGF11150.1| XRE family transcriptional regulator [Neisseria bacilliformis
          ATCC BAA-1200]
          Length = 125

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                ++ F      + +  +LTQ E+  RTG ++S IS L  G S   I+ M+ + H 
Sbjct: 8  KQQEAAKIDFAIMLDGLLESKQLTQTELAARTGKSKSLISRLMGGDSNPTIETMVSVLHA 67

Query: 73 LDTPLW 78
          +   L 
Sbjct: 68 VGENLV 73


>gi|311031859|ref|ZP_07709949.1| transcriptional regulator SinR [Bacillus sp. m3-13]
          Length = 124

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     + +RK    +  E+    G ++S++S LE   ++  ++  +  +A TL+T L  
Sbjct: 1  MLGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQTNPSLQFLNKIAVTLETDLDF 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|307128188|ref|YP_003880219.1| transcriptional activator [Streptococcus pneumoniae 670-6B]
 gi|306485250|gb|ADM92119.1| transcriptional activator [Streptococcus pneumoniae 670-6B]
          Length = 299

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|271961688|ref|YP_003335884.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270504863|gb|ACZ83141.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 241

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    R  R+   L+Q ++  R G  Q  +S +E+G+S      ++ L  +++ PL +
Sbjct: 3  FPQTLRATRQRRHLSQLDLALRAGTTQRHLSFMESGRSRPGRTMVVRLGESMELPLRE 60


>gi|258515642|ref|YP_003191864.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
 gi|257779347|gb|ACV63241.1| transcriptional regulator, XRE family [Desulfotomaculum
          acetoxidans DSM 771]
          Length = 125

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +RK   L  +E+    G  +  I   E  +S  + D +I+ A   +  L  L+
Sbjct: 4  FGERLYQLRKSKNLKAEELAEFVGLKRRIIFLYEKNESKPSYDTLILFADFFNVSLDYLV 63


>gi|229014192|ref|ZP_04171313.1| Transcriptional regulator, Cro/CI [Bacillus mycoides DSM 2048]
 gi|228747146|gb|EEL97028.1| Transcriptional regulator, Cro/CI [Bacillus mycoides DSM 2048]
          Length = 75

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN   +R E + +Q ++ N+ G ++  I+ +E  +   ++     +A  L     ++ +
Sbjct: 9  NNLVVLRAEKRWSQTDLANQAGVSRQTIASIEANRYNPSLILAFEIASILGKEFHEVFQ 67


>gi|295839825|ref|ZP_06826758.1| regulatory protein [Streptomyces sp. SPB74]
 gi|197697770|gb|EDY44703.1| regulatory protein [Streptomyces sp. SPB74]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  R  R+  +LT   +  R+G +  ++S++E  ++  +  ++  +AH L+T + +L 
Sbjct: 9  VGNAVRRRRRALELTLATVARRSGLSVPFLSQIENERARPSTRSLCAVAHALETTVDELF 68


>gi|170693398|ref|ZP_02884557.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
 gi|170141553|gb|EDT09722.1| transcriptional regulator, XRE family [Burkholderia graminis
          C4D1M]
          Length = 229

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 34/74 (45%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P  ++       +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  
Sbjct: 19 PRAAEPFDALEHLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCK 78

Query: 69 LAHTLDTPLWKLLK 82
          +A  L   +   L+
Sbjct: 79 VAAALKVSVAAFLR 92


>gi|170698980|ref|ZP_02890038.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
 gi|170136087|gb|EDT04357.1| transcriptional regulator, XRE family [Burkholderia ambifaria
          IOP40-10]
          Length = 227

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|217975711|ref|YP_002360310.1| putative phage repressor [Shewanella baltica OS223]
 gi|217501061|gb|ACK48948.1| putative phage repressor [Shewanella baltica OS223]
          Length = 231

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS 59
          F  N + +R +   +Q+E   R G  +S IS+ E GKS
Sbjct: 23 FERNLKQLRIDLGFSQEEFGRRIGVTKSTISQWEAGKS 60


>gi|219849656|ref|YP_002464089.1| helix-turn-helix domain-containing protein [Chloroflexus
          aggregans DSM 9485]
 gi|219543915|gb|ACL25653.1| helix-turn-helix domain protein [Chloroflexus aggregans DSM 9485]
          Length = 393

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +     R +R    +T  ++   T     +  IS+ E G++  +   +  LA  L     
Sbjct: 1  MINQRLRQLRLARGMTLDDLAQATNRIVTRQAISKYEHGQAQPSPIVLQRLAQALGVRPT 60

Query: 79 KLL 81
           LL
Sbjct: 61 DLL 63


>gi|15894244|ref|NP_347593.1| Xre family DNA-binding domain-/TPR repeat-containing protein
          [Clostridium acetobutylicum ATCC 824]
 gi|15023861|gb|AAK78933.1|AE007611_1 Xre family DNA-binding domain and TPR-repeat-containing protein
          [Clostridium acetobutylicum ATCC 824]
 gi|325508372|gb|ADZ20008.1| Xre family DNA-binding domain and TPR-repeat-containing protein
          [Clostridium acetobutylicum EA 2018]
          Length = 434

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++          IS +E+GKS  ++D +  LA  L+T +
Sbjct: 2  EILSLGEKIKARRKELNMTLKDLAGD-RITPGQISLVESGKSNPSMDLLEYLAGALNTSV 60

Query: 78 WKLLK 82
            L++
Sbjct: 61 EYLME 65


>gi|327394598|dbj|BAK12020.1| hypothetical protein PAJ_1940 [Pantoea ananatis AJ13355]
          Length = 266

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76
          R+   L ++E+  R G +  W + +E G++  +  + +  LA  L   
Sbjct: 31 RRTPGLRREEVAERAGISVDWYTRIEQGRANAVTHETLERLADALSMS 78


>gi|308179156|ref|YP_003918562.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
 gi|307746619|emb|CBT77591.1| helix-turn-helix domain-containing protein [Arthrobacter
          arilaitensis Re117]
          Length = 163

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +    +R+    TQ+ +   +G     +  LE G +  +++ + ++A  LD  +  L K
Sbjct: 4  SRIAELRRVKGWTQERLATESGITVRTVQRLEAG-NDASLETISLVAKALDVQVGDLFK 61


>gi|256396188|ref|YP_003117752.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256362414|gb|ACU75911.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 245

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 29/63 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R+ +  T +++      +  ++SE+E G+   + + +  +   L+  L 
Sbjct: 5  RRLLGDVLRGRRQRSGRTLRQLAATARVSPGYLSEVERGQKEPSSELLAAICDALEVKLS 64

Query: 79 KLL 81
           +L
Sbjct: 65 DVL 67


>gi|228995761|ref|ZP_04155422.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17]
 gi|229003381|ref|ZP_04161205.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4]
 gi|228757871|gb|EEM07092.1| hypothetical protein bmyco0002_3590 [Bacillus mycoides Rock1-4]
 gi|228764005|gb|EEM12891.1| hypothetical protein bmyco0003_3600 [Bacillus mycoides Rock3-17]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 4  QVRRKDVKNQIYALRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 63

Query: 76 PLWKLL 81
           + KL 
Sbjct: 64 TVDKLF 69


>gi|160941964|ref|ZP_02089287.1| hypothetical protein CLOBOL_06856 [Clostridium bolteae ATCC
          BAA-613]
 gi|158435128|gb|EDP12895.1| hypothetical protein CLOBOL_06856 [Clostridium bolteae ATCC
          BAA-613]
          Length = 87

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISE-----LETGKSTINIDNMIIL 69
             +R +  N    +RK  KL+QKE+  +      + SE     +E GK  +    + IL
Sbjct: 7  SQPQRNLIGNQIFKLRKSRKLSQKEMAAQLQVQGYYFSELTILRIEKGKRLVTDIELKIL 66

Query: 70 AHTLDTPLWKLL 81
                    LL
Sbjct: 67 CDYFRITPNDLL 78


>gi|158317815|ref|YP_001510323.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113220|gb|ABW15417.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 313

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R+  +LTQ  +  R   +   IS +E G+S    + +I+L+  L  PL +
Sbjct: 38 VGALLRGWRERRRLTQLGLAERANVSTRRISFVENGRSRPTSEMIIMLSEHLGVPLRE 95


>gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis
          BI429]
 gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis
          BI429]
          Length = 244

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 23/55 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               + +R E  ++Q+++  R G ++  IS  E  +    +  +  +A   +  
Sbjct: 3  LGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILREIAKIFNVS 57


>gi|114770339|ref|ZP_01447877.1| hypothetical protein OM2255_11900 [alpha proteobacterium
          HTCC2255]
 gi|114549176|gb|EAU52059.1| hypothetical protein OM2255_11900 [alpha proteobacterium
          HTCC2255]
          Length = 468

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      + IR    L+Q  + N    + S+++ +E  +  I +  ++ L+ T +   
Sbjct: 4  QKIFAGPRVKKIRNSIGLSQSAMANELDISPSYLNLIERNQRPITVQLILKLSKTYNISP 63

Query: 78 WKL 80
           +L
Sbjct: 64 EEL 66


>gi|89894127|ref|YP_517614.1| hypothetical protein DSY1381 [Desulfitobacterium hafniense Y51]
 gi|89333575|dbj|BAE83170.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 55

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+++    G  +  I  +E GK   ++   I +   L   L  L 
Sbjct: 1  MSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLF 47


>gi|15597508|ref|NP_251002.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|116050256|ref|YP_790927.1| XRE family transcriptional regulator [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218891714|ref|YP_002440581.1| putative transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
 gi|254240751|ref|ZP_04934073.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192]
 gi|9948345|gb|AAG05700.1|AE004657_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
 gi|115585477|gb|ABJ11492.1| putative transcriptional regulator, XRE family [Pseudomonas
          aeruginosa UCBPP-PA14]
 gi|126194129|gb|EAZ58192.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192]
 gi|218771940|emb|CAW27719.1| probable transcriptional regulator [Pseudomonas aeruginosa
          LESB58]
          Length = 193

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
              D ++ +R    +N   +R +  L+   +   +G +++ ++++E+G+S  +I  +  
Sbjct: 2  HTEPDDLIGQR--VAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 59

Query: 69 LAHTLDTPLWKLL 81
          +A  L   +   L
Sbjct: 60 IAQGLKVSVAAFL 72


>gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis
          MED217]
 gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis
          MED217]
          Length = 66

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +R   K+TQ ++  +   ++  ++ +E GK   ++     LA   +  + +L 
Sbjct: 3  NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFDPSLPTAFRLAAVFNCSIEELF 60


>gi|331019614|gb|EGH99670.1| helix-turn-helix domain-containing protein [Pseudomonas syringae
          pv. lachrymans str. M302278PT]
          Length = 135

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F    + +R    LTQK + + +  +++++S+LE  +S++ +D +  ++ TL+    
Sbjct: 4  KTAFAAVLKAMRSSRGLTQKHLSDAS--SRTYLSKLERAQSSLTLDKLQAISQTLELSPL 61

Query: 79 KLL 81
           L+
Sbjct: 62 TLV 64


>gi|326802770|ref|YP_004320588.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
 gi|326651230|gb|AEA01413.1| DNA-binding helix-turn-helix protein [Aerococcus urinae
          ACS-120-V-Col10a]
          Length = 194

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            N  ++ R+ A LT + +  + G + S +   E GKS +N +++  LA      
Sbjct: 4  LANRLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSEVNQESLTKLAELYGVS 58


>gi|322370379|ref|ZP_08044938.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus
          DX253]
 gi|320550087|gb|EFW91742.1| HTH/CBS domain-containing protein [Haladaptatus paucihalophilus
          DX253]
          Length = 179

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           + R  R +  LTQ E+  R G +Q  I+ +E       +  +  + + L+     +++
Sbjct: 7  QDLREHRTDLGLTQSELAERAGVSQPLIARIEGDDVDPRLSTLRRIVNALEESEGDIVR 65


>gi|294509118|ref|YP_003566046.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
 gi|294352042|gb|ADE72366.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551]
          Length = 149

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 R+E  LTQ ++       +  IS+ E+  +      +  LA  L+     LL+
Sbjct: 4  GEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDYLLR 63


>gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 386

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L    I     R  R    L+  E+  + G +   IS+ E G ST +    I L   LD
Sbjct: 8  VLDSNKIIPAKIREARISRGLSLSELSTKIGVSSQAISQYELGISTPSALTFIKLVEELD 67

Query: 75 TP 76
           P
Sbjct: 68 FP 69


>gi|227892048|ref|ZP_04009853.1| bifunctional S24 family peptidase/transcriptional regulator
          [Lactobacillus salivarius ATCC 11741]
 gi|227866158|gb|EEJ73579.1| bifunctional S24 family peptidase/transcriptional regulator
          [Lactobacillus salivarius ATCC 11741]
          Length = 183

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          +F    +   +   +TQ E+  R+G +++ I++   GK     D +  LA  L+  
Sbjct: 3  VFQKRLKEAIENMGITQAELARRSGISRASITDYLKGKYEAKQDKIYPLARALNVS 58


>gi|224282243|ref|ZP_03645565.1| putative phage regulatory protein [Bifidobacterium bifidum NCIMB
          41171]
 gi|311063583|ref|YP_003970308.1| XRE family transcriptional regulator [Bifidobacterium bifidum
          PRL2010]
 gi|313139384|ref|ZP_07801577.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
 gi|310865902|gb|ADP35271.1| XRE family transcriptional regulator [Bifidobacterium bifidum
          PRL2010]
 gi|313131894|gb|EFR49511.1| predicted protein [Bifidobacterium bifidum NCIMB 41171]
          Length = 113

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R + ++  + Q ++  R G  Q  IS+   G+       +  +A  L T    LL
Sbjct: 5  LGDRMRKLMRQHGINQSQLAARAGTTQPNISKYLAGEREPTSSTLANIATALHTTSEFLL 64


>gi|254474388|ref|ZP_05087774.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
 gi|214028631|gb|EEB69466.1| transcriptional regulator, XRE family [Ruegeria sp. R11]
          Length = 462

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R    LTQKE   + G +  +++++E     ++   ++ LA      +
Sbjct: 4  QKLYAGAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDV 63

Query: 78 WKL 80
           +L
Sbjct: 64 TEL 66


>gi|190570724|ref|YP_001975082.1| Putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus Pel]
 gi|213019732|ref|ZP_03335537.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
 gi|190356996|emb|CAQ54385.1| Putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus Pel]
 gi|212994773|gb|EEB55416.1| putative transcriptional regulator [Wolbachia endosymbiont of
          Culex quinquefasciatus JHB]
          Length = 306

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +     RN R     TQK++  +       I + E G   I+I  +  LA  L T    
Sbjct: 14 KVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKLYELAEALSTTARD 73

Query: 80 L 80
          L
Sbjct: 74 L 74



 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +  R     TQ+++ ++ G     I E E G+S ++++ +  +A  L   +  LL
Sbjct: 167 VGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRSAVSLEMLDEIAKVLLINITDLL 226


>gi|171742425|ref|ZP_02918232.1| hypothetical protein BIFDEN_01536 [Bifidobacterium dentium ATCC
           27678]
 gi|283456489|ref|YP_003361053.1| XRE family transcriptional regulator [Bifidobacterium dentium Bd1]
 gi|171278039|gb|EDT45700.1| hypothetical protein BIFDEN_01536 [Bifidobacterium dentium ATCC
           27678]
 gi|283103123|gb|ADB10229.1| XRE family transcriptional regulator [Bifidobacterium dentium Bd1]
          Length = 143

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN---IDNMIILAHTLDTPLWKLL 81
            R IR+E  LTQ+ +   TG  Q  IS  ETG   ++   +D    L+  L       L
Sbjct: 83  LRRIRRERHLTQRMLSALTGIPQPNISWFETGYRPVSQMYLDTARRLSEALQCDPVDFL 141


>gi|168205968|ref|ZP_02631973.1| LexA repressor [Clostridium perfringens E str. JGS1987]
 gi|170662549|gb|EDT15232.1| LexA repressor [Clostridium perfringens E str. JGS1987]
          Length = 365

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ RK+ K++Q++   +   A+S +S  E  KS   I  ++ ++  ++  + +LL
Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69


>gi|149923376|ref|ZP_01911783.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
 gi|149815790|gb|EDM75314.1| DNA-binding protein [Plesiocystis pacifica SIR-1]
          Length = 139

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +   F  + R +RK   LTQ+ +  R   +   I  LE G  + ++  ++ LA  L   
Sbjct: 19 VDAHAFGFHIRTLRKARGLTQEVLAERARLSADTIRRLEAGSFSPSMKTLVSLARGLHLR 78

Query: 77 L 77
          L
Sbjct: 79 L 79


>gi|134096687|ref|YP_001102348.1| regulator [Saccharopolyspora erythraea NRRL 2338]
 gi|133909310|emb|CAL99422.1| regulator [Saccharopolyspora erythraea NRRL 2338]
          Length = 436

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ++ +R+   ++Q++I   TG +QS +SE+  G+  +  D +  +A  L  P
Sbjct: 14 YKQLRR-HGVSQRQIAASTGQSQSEVSEILKGRQVMAYDVLARIADGLGIP 63


>gi|114762993|ref|ZP_01442423.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601]
 gi|114544317|gb|EAU47325.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601]
          Length = 127

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R+ R    +TQ+++  + G     I + ETG + ++   +  +A  L+ P
Sbjct: 9  VGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADALEVP 63


>gi|150377745|ref|YP_001314340.1| XRE family transcriptional regulator [Sinorhizobium medicae
          WSM419]
 gi|150032292|gb|ABR64407.1| transcriptional regulator, XRE family [Sinorhizobium medicae
          WSM419]
          Length = 90

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F +  R  RK    TQ E+  R+G  + +I ELE+GK +  ++  +I+A T+   +  L
Sbjct: 8  FGDAVREKRKVLGWTQAELATRSGTGERFIVELESGKRSCQLEKALIVARTVGIEIGDL 66


>gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1]
 gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri
          JR1]
          Length = 342

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      ++ R  A L+Q+ +  + G +   IS+ E G+ T     +I ++  L   +  
Sbjct: 1  MTIGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDY 60

Query: 80 LLK 82
            +
Sbjct: 61 FFR 63


>gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437]
          Length = 108

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 27/62 (43%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    + +RK+ K+TQ E+    G   + IS+ E+      +  +  +A   +     
Sbjct: 1  MSFGQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYEPEMTAIKEIADFFNVSADY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|332366265|gb|EGJ44020.1| transcriptional regulator [Streptococcus sanguinis SK355]
          Length = 116

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +  R + K++Q+E+  + G    +I++LE     + I ++  + + L     +  
Sbjct: 13 QKVKYFRTKNKMSQEELSEQAGLGLKYINQLENQNVNLTIHSLEKVINALQMTSEEFF 70


>gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
          bulgaricus 2038]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ +     R++R+   ++Q+E+    G ++  IS  E G+    +  +  +A+     
Sbjct: 2  EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60


>gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium
          8_1_57FAA]
 gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium
          8_1_57FAA]
          Length = 177

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +     R  R+    +Q ++   +G     I + E G      D +  +A  L 
Sbjct: 1  MVGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALG 54


>gi|313669549|ref|YP_004049974.1| hypothetical protein Sulku_2772 [Sulfuricurvum kujiense DSM
          16994]
 gi|313156746|gb|ADR35421.1| protein of unknown function DUF955 [Sulfuricurvum kujiense DSM
          16994]
          Length = 354

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 26/55 (47%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +F       RK A L+ + + ++ G +Q+ I++ E  +   +   ++ L+  L  
Sbjct: 1  MFGERIARARKTAGLSLRGLADQVGVSQTAIAKYEKNQIHPDSQMLLKLSQALGV 55


>gi|258647029|ref|ZP_05734498.1| DNA-binding protein [Dialister invisus DSM 15470]
 gi|260404470|gb|EEW98017.1| DNA-binding protein [Dialister invisus DSM 15470]
          Length = 249

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     R  RK+  ++ +++ +    + S +S+ E+G+  ++I  +  +AH    P+ +
Sbjct: 19 QILGKRIRYYRKQKHMSLRQLADIICKSVSTLSKYESGQIVLDITTLYDIAHAFHLPVEQ 78

Query: 80 LL 81
          LL
Sbjct: 79 LL 80


>gi|304315632|ref|YP_003850777.1| hypothetical protein Tthe_0104 [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302777134|gb|ADL67693.1| helix-turn-helix domain protein [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 439

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              + IRK  K+ Q+E+++     + +IS +E+ +S ++ID    +A   +    +L
Sbjct: 7  GEKVKKIRKMLKIKQRELQDE-NITRGFISMIESNRSRMSIDTAKKIAKRFNERAKEL 63


>gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 62

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R+ +  +Q E+  R G ++  I+ LETGK   ++     +A      +  + 
Sbjct: 1  MRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 56


>gi|167840672|ref|ZP_02467356.1| putative transcriptional regulatory protein [Burkholderia
          thailandensis MSMB43]
          Length = 186

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R+ R   ++T K +  + G ++S +S++E G +T ++  +  LA  LDT +  L+
Sbjct: 2  RLRHARMVQQMTLKALAEQAGCSESLLSKVEGGHATPSLATLHRLALALDTNVAALV 58


>gi|148992305|ref|ZP_01822028.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP9-BS68]
 gi|147928931|gb|EDK79943.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP9-BS68]
          Length = 70

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 2  RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 60


>gi|161523788|ref|YP_001578800.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|189351451|ref|YP_001947079.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
 gi|160341217|gb|ABX14303.1| transcriptional regulator, XRE family [Burkholderia multivorans
          ATCC 17616]
 gi|189335473|dbj|BAG44543.1| XRE family transcriptional regulator [Burkholderia multivorans
          ATCC 17616]
          Length = 227

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +   
Sbjct: 34 IVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 93

Query: 81 LK 82
          L+
Sbjct: 94 LR 95


>gi|15900493|ref|NP_345097.1| transcriptional regulator, putative [Streptococcus pneumoniae
          TIGR4]
 gi|149010796|ref|ZP_01832167.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP19-BS75]
 gi|14972058|gb|AAK74737.1| putative transcriptional regulator [Streptococcus pneumoniae
          TIGR4]
 gi|147765277|gb|EDK72206.1| transcriptional regulator, putative [Streptococcus pneumoniae
          SP19-BS75]
          Length = 70

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 2  RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 60


>gi|163941532|ref|YP_001646416.1| XRE family transcriptional regulator [Bacillus weihenstephanensis
          KBAB4]
 gi|163863729|gb|ABY44788.1| transcriptional regulator, XRE family [Bacillus
          weihenstephanensis KBAB4]
          Length = 86

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 27/57 (47%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          + IR +  ++ +E   + G +  ++S++E G+  I+ +    +A   +     +  P
Sbjct: 20 KEIRMKLGISIEEAAKKLGISGGYLSQIENGQRQISTERADQIAKLYEKKKEDIFLP 76


>gi|126462571|ref|YP_001043685.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides ATCC 17029]
 gi|332558597|ref|ZP_08412919.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides WS8N]
 gi|126104235|gb|ABN76913.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC
          17029]
 gi|332276309|gb|EGJ21624.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides WS8N]
          Length = 428

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  +  R  R +  L Q ++    G + S+++ +E  +  I  + +  LA  L  
Sbjct: 1  MPMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60

Query: 76 PLWKL 80
              L
Sbjct: 61 EAQTL 65


>gi|331084883|ref|ZP_08333971.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330410977|gb|EGG90399.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 121

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     ++RK   ++Q+E+      ++  IS+ E+ +S  +   +++L+      L +L+
Sbjct: 3  FNEKLISLRKSKGMSQEELGVELNVSRQTISKWESCQSYPDFQRLVLLSDFFGLTLDELV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|330503401|ref|YP_004380270.1| helix-turn-helix domain-containing protein [Pseudomonas mendocina
          NK-01]
 gi|328917687|gb|AEB58518.1| helix-turn-helix domain-containing protein [Pseudomonas mendocina
          NK-01]
          Length = 96

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +N+R    L Q+ +    G +QS+IS +E GK   +I+ +  +A  +      LL
Sbjct: 11 IKNLRNLKDLPQEGL----GPSQSYISAIERGKWKPSIEKVEQIAEVVGIHPLTLL 62


>gi|328885617|emb|CCA58856.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712]
          Length = 468

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 23/55 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R +R++  ++Q E+      + S+++++E     + +  ++ L        
Sbjct: 7  GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDP 61


>gi|320334222|ref|YP_004170933.1| XRE family transcriptional regulator [Deinococcus maricopensis
          DSM 21211]
 gi|319755511|gb|ADV67268.1| transcriptional regulator, XRE family [Deinococcus maricopensis
          DSM 21211]
          Length = 64

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N  R +R E   TQ ++ N    ++  ++ LETG+   ++     +A T   PL  +  P
Sbjct: 3  NRIRVLRTERGWTQADLANHLDVSRQTVNALETGRYDPSLPLAFRIARTFALPLEAIFTP 62


>gi|319744446|gb|EFV96803.1| phage associated transcriptional regulator [Streptococcus
          agalactiae ATCC 13813]
          Length = 74

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++   TQK + N   F+ +  +++E G+  +  D ++ L+   +     LL
Sbjct: 3  QRIRDLREDHDFTQKFVANLLSFSHTNYAKIERGEVALTADVLVQLSKLYNVSTDYLL 60


>gi|319793072|ref|YP_004154712.1| XRE family transcriptional regulator [Variovorax paradoxus EPS]
 gi|315595535|gb|ADU36601.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS]
          Length = 503

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 30/58 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++       R++R+E  L+Q  +  + G + S+++++E  +  + +  ++ L  TL  
Sbjct: 2  KKTFMGVRLRSLREERGLSQLALAQQLGLSPSYLNQIEQNQRPLTVPVLLRLHATLGV 59


>gi|315633741|ref|ZP_07889031.1| DNA-binding protein [Aggregatibacter segnis ATCC 33393]
 gi|315477783|gb|EFU68525.1| DNA-binding protein [Aggregatibacter segnis ATCC 33393]
          Length = 140

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R+    +Q+E+  +   + +  +++E G++ +++D +  +A  LD  + +L+
Sbjct: 5  EKIRKLRETKHWSQEEMAEKMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDIVELI 62


>gi|312888716|ref|ZP_07748283.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
 gi|311298819|gb|EFQ75921.1| transcriptional regulator, XRE family [Mucilaginibacter paludis
          DSM 18603]
          Length = 191

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            +  R+E  LT +E+ ++   ++  IS++E  ++  ++  +I +   LD  L K  K
Sbjct: 12 RIKERRREKNLTIQELADKASVSKGLISQIENSRTIPSLMVLIEIIKGLDVDLNKFFK 69


>gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae
          SCF1]
 gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1]
          Length = 191

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R+    +  E+ +R G +++ I ++E G S+     +  L+      +  L+
Sbjct: 13 GARIRIERESRSWSLSELADRAGVSRTMIHKIERGDSSPTATMLGRLSGAFGISMSTLI 71


>gi|295090297|emb|CBK76404.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10]
          Length = 105

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/64 (14%), Positives = 29/64 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E+    +    +R +  +++ ++    G  +S+I  + +G+S   ++N + +   L+   
Sbjct: 2  EKKFIGDRITELRIKKNVSEYQMSLDLGKNKSYIQSISSGRSLPTMENFLEICEYLEVTP 61

Query: 78 WKLL 81
           +  
Sbjct: 62 CQFF 65


>gi|294813424|ref|ZP_06772067.1| helix-hairpin-helix DNA-binding protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326023|gb|EFG07666.1| helix-hairpin-helix DNA-binding protein [Streptomyces clavuligerus
           ATCC 27064]
          Length = 493

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
           R  P      +   ++F    R +R+E  ++ +E     G+ ++ +S++E G    ++
Sbjct: 64  RCMPCKEHVGMSASLVFGPEMRRLRQERGISLREFATLVGYHKAHLSKVERGLRRASV 121


>gi|297545444|ref|YP_003677746.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          mathranii subsp. mathranii str. A3]
 gi|296843219|gb|ADH61735.1| helix-turn-helix domain protein [Thermoanaerobacter mathranii
          subsp. mathranii str. A3]
          Length = 438

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L Q ++     F++ +IS +E GK + ++  +  +A  L+ P+   L
Sbjct: 6  LGRRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64


>gi|229002562|ref|ZP_04160621.1| transcriptional regulator/TPR domain protein [Bacillus mycoides
          Rock3-17]
 gi|229009341|ref|ZP_04166620.1| transcriptional regulator/TPR domain protein [Bacillus mycoides
          Rock1-4]
 gi|228751932|gb|EEM01680.1| transcriptional regulator/TPR domain protein [Bacillus mycoides
          Rock1-4]
 gi|228758542|gb|EEM07680.1| transcriptional regulator/TPR domain protein [Bacillus mycoides
          Rock3-17]
          Length = 422

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDT 75
               R IR   + TQ E+   +G  + +++S +E G+   +   +  +A  LD 
Sbjct: 3  VGERIRQIRIHKEFTQGEL--VSGICSITYLSRIENGQIKPSTSFLEKVAEKLDV 55


>gi|228955292|ref|ZP_04117300.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228961271|ref|ZP_04122890.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|229049716|ref|ZP_04194273.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676]
 gi|229072514|ref|ZP_04205716.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185]
 gi|229082273|ref|ZP_04214736.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2]
 gi|229112472|ref|ZP_04242009.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15]
 gi|229130284|ref|ZP_04259243.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4]
 gi|229142358|ref|ZP_04270877.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26]
 gi|229147576|ref|ZP_04275921.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24]
 gi|229153219|ref|ZP_04281398.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550]
 gi|229181321|ref|ZP_04308651.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W]
 gi|229193309|ref|ZP_04320259.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876]
 gi|228590110|gb|EEK47979.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876]
 gi|228602214|gb|EEK59705.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W]
 gi|228630318|gb|EEK86968.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550]
 gi|228635866|gb|EEK92351.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24]
 gi|228641128|gb|EEK97440.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26]
 gi|228653217|gb|EEL09096.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4]
 gi|228670852|gb|EEL26159.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15]
 gi|228700705|gb|EEL53228.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2]
 gi|228710490|gb|EEL62463.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185]
 gi|228722629|gb|EEL74017.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676]
 gi|228798392|gb|EEM45386.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228804425|gb|EEM51036.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
          Length = 79

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|222152322|ref|YP_002561497.1| DNA-binding protein [Streptococcus uberis 0140J]
 gi|222113133|emb|CAR40543.1| putative DNA-binding protein [Streptococcus uberis 0140J]
          Length = 67

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE K++Q E+       +  I  LE G+   +++    LA   +  +  + 
Sbjct: 3  NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNASLELAFKLATYFNLSIEDIF 60


>gi|221200113|ref|ZP_03573156.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2M]
 gi|221206734|ref|ZP_03579746.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2]
 gi|221211293|ref|ZP_03584272.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221168654|gb|EEE01122.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD1]
 gi|221173389|gb|EEE05824.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2]
 gi|221180352|gb|EEE12756.1| transcriptional regulator, XRE family [Burkholderia multivorans
          CGD2M]
          Length = 227

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +   
Sbjct: 34 IVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 93

Query: 81 LK 82
          L+
Sbjct: 94 LR 95


>gi|189465237|ref|ZP_03014022.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM
          17393]
 gi|189437511|gb|EDV06496.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM
          17393]
          Length = 191

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +++  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|206974554|ref|ZP_03235470.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|222096804|ref|YP_002530861.1| transcriptional regulator [Bacillus cereus Q1]
 gi|206747197|gb|EDZ58588.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|221240862|gb|ACM13572.1| transcriptional regulator [Bacillus cereus Q1]
          Length = 67

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M FV   +  R +  +TQ+++    G  +  IS LE GK   ++     +A  L + + +
Sbjct: 1  MAFVTKIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDE 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|160938164|ref|ZP_02085520.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438968|gb|EDP16724.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC
          BAA-613]
          Length = 359

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++R+   +TQ+++    G +   +S+ ETG S  +I  +  LA  L+T +  LL
Sbjct: 5  LGPRIASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNVDTLL 64

Query: 82 K 82
          +
Sbjct: 65 Q 65


>gi|254235322|ref|ZP_04928645.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719]
 gi|126167253|gb|EAZ52764.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719]
          Length = 193

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
              D ++ +R    +N   +R +  L+   +   +G +++ ++++E+G+S  +I  +  
Sbjct: 2  HTEPDDLIGQR--VAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCK 59

Query: 69 LAHTLDTPLWKLL 81
          +A  L   +   L
Sbjct: 60 IAQGLKVSVAAFL 72


>gi|56698522|ref|YP_168898.1| anaerobic benzoate catabolism transcriptional regulator [Ruegeria
          pomeroyi DSS-3]
 gi|56680259|gb|AAV96925.1| DNA-binding/shikimate kinase domain protein [Ruegeria pomeroyi
          DSS-3]
          Length = 305

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          P   RD+     A L  R       R  R+   + ++ +   +G +  ++++LE G+  I
Sbjct: 13 PNSARDQAEAEVADLIAR--VGERVRAARQRRGIPRRVLSEISGVSPRYLAQLEAGEGNI 70

Query: 62 NIDNMIILAHTLD 74
          +I  +  +A  LD
Sbjct: 71 SIGLLQRVATALD 83


>gi|328947690|ref|YP_004365027.1| hypothetical protein Tresu_0801 [Treponema succinifaciens DSM
          2489]
 gi|328448014|gb|AEB13730.1| helix-turn-helix domain protein [Treponema succinifaciens DSM
          2489]
          Length = 109

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             N + IRKE  LTQ ++  +   ++  +  +E  +   +  N+  +   L   +  L 
Sbjct: 10 LGENVKRIRKEQNLTQFQLAEKAELSEETVKNIELSRCWTSDKNLAKITKALGVDISFLF 69

Query: 82 KP 83
           P
Sbjct: 70 LP 71


>gi|313885531|ref|ZP_07819281.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619261|gb|EFR30700.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 213

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E   F  N + +R +  +TQ+EI +  G  +   +S+ E G++T N  N+  +A      
Sbjct: 3  ENNFFGKNLKYLRNKKGITQQEIADLIGRKSTGSVSDWEAGRTTPNAGNISKIASYFGLK 62

Query: 77 LWKLLK 82
          +  +++
Sbjct: 63 IDAMVE 68


>gi|228943045|ref|ZP_04105546.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
 gi|228955927|ref|ZP_04117864.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228968662|ref|ZP_04129641.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228976622|ref|ZP_04137065.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228783091|gb|EEM31227.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          thuringiensis str. T01001]
 gi|228791025|gb|EEM38647.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          sotto str. T04001]
 gi|228803754|gb|EEM50436.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          kurstaki str. T03a001]
 gi|228816630|gb|EEM62754.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar
          berliner ATCC 10792]
          Length = 133

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  IF  N RN+R    L+   +    G   S IS  E G    N D +  ++       
Sbjct: 5  EDNIFGRNLRNLRNLQGLSLNALGKELGVTGSAISSWELGNKEPNFDMLKKVSGFFQVST 64

Query: 78 WKLL 81
            +L
Sbjct: 65 DYML 68


>gi|229100661|ref|ZP_04231509.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29]
 gi|229107528|ref|ZP_04237280.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28]
 gi|229119263|ref|ZP_04248568.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3]
 gi|228664188|gb|EEL19724.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3]
 gi|228675920|gb|EEL31013.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28]
 gi|228682754|gb|EEL36784.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29]
          Length = 64

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T + KL 
Sbjct: 3  NQIYELRTENNISQGALADKCSVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60


>gi|237731517|ref|ZP_04561998.1| transcriptional regulator [Citrobacter sp. 30_2]
 gi|226907056|gb|EEH92974.1| transcriptional regulator [Citrobacter sp. 30_2]
          Length = 104

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT--PL 77
           +  +  R  R   ++TQ ++  R+G   + +S LETGK  +  +N++ +A  L     L
Sbjct: 13 KLLCDRLRKERLAQQMTQADVAARSGVGVNTVSNLETGK-NVGFENLVKVAMVLGYGDAL 71

Query: 78 WKLLKP 83
            L KP
Sbjct: 72 EGLFKP 77


>gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM
          12042]
 gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM
          12042]
          Length = 358

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE   TQ ++    G     +S+ ETGKS  +   +  L+  L   L +L 
Sbjct: 14 RKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGITLSELF 65


>gi|239617046|ref|YP_002940368.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1]
 gi|239505877|gb|ACR79364.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1]
          Length = 351

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 27/64 (42%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   +  +  R    ++ +++  + G +   IS+ E  +   +   +I L+  L+  +  
Sbjct: 1  MSIGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEY 60

Query: 80 LLKP 83
            +P
Sbjct: 61 FFRP 64


>gi|254385422|ref|ZP_05000750.1| transcriptional regulator [Streptomyces sp. Mg1]
 gi|194344295|gb|EDX25261.1| transcriptional regulator [Streptomyces sp. Mg1]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P  + A  R    F    R  R   +++Q E+    G  Q  +S +E+G+S      ++
Sbjct: 2  APTTAAAAERRPSPFSREVRRWRALRRMSQLELAALAGTTQRHLSFIESGRSAPGRAMVV 61

Query: 68 ILAHTLDTPLWK 79
           LA +L   L +
Sbjct: 62 RLAESLALSLRE 73


>gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC
          15579]
 gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC
          15579]
          Length = 180

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +  + +RK   +TQ+E+    G   S +   ET     + + +I +A         L
Sbjct: 35 LLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIADFFCVSTDFL 94

Query: 81 L 81
          L
Sbjct: 95 L 95


>gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii
          str. Challis substr. CH1]
 gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii
          str. Challis substr. CH1]
          Length = 167

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+++  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 3  LADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 62


>gi|160893603|ref|ZP_02074387.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50]
 gi|156864588|gb|EDO58019.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50]
          Length = 145

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F    +  R    L+QK++  + G     I+  E G+       +  LA  L+     
Sbjct: 2  KSFGAKVKEQRGNLGLSQKQLAEKAGMGIRTITSYELGERKPYQAQLYKLAKALEVSTEY 61

Query: 80 L 80
          L
Sbjct: 62 L 62


>gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 474

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          + +      R +R    LT  ++    G A S +S +E G+    +  +  +A  L+  L
Sbjct: 2  DTLTIGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTLLQAIARALECKL 61

Query: 78 WKLL 81
           ++L
Sbjct: 62 DQIL 65


>gi|331677084|ref|ZP_08377780.1| putative transcriptional regulator [Escherichia coli H591]
 gi|331075773|gb|EGI47071.1| putative transcriptional regulator [Escherichia coli H591]
          Length = 89

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                IR++  L+Q+     +G   S IS +E  K +  I  +  L       L +  
Sbjct: 9  GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFF 67


>gi|297157619|gb|ADI07331.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 104

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          R    L+Q E+  R G  Q  IS +E G +   I  +  LA  LD+ L   L P
Sbjct: 46 RTALGLSQTELAERCGMKQPQISRIEGGGTVPTIPLLRRLARALDSDLTINLTP 99


>gi|262042671|ref|ZP_06015825.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
 gi|259039896|gb|EEW41013.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884]
          Length = 200

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          SD     R +     +  RK  K++  E+  R   ++  + E+E   +  +I  +  LA 
Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71

Query: 72 TLDTPLWKLL 81
           L   +  ++
Sbjct: 72 ALGVSVADIV 81


>gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b]
 gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b]
          Length = 181

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 25/51 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           + +R+    +      RTG +++ + ++E G+S+  +  +  +A   + P
Sbjct: 12 LKQLRQANGWSLTLAAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 62


>gi|291612556|ref|YP_003522713.1| XRE family transcriptional regulator [Sideroxydans lithotrophicus
          ES-1]
 gi|291582668|gb|ADE10326.1| transcriptional regulator, XRE family [Sideroxydans
          lithotrophicus ES-1]
          Length = 100

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R   +L+Q E+  R   + S++SELETG  T +++ +   +     P   +
Sbjct: 1  MLNRALKLLRTFHQLSQVELARRLEISNSYLSELETGAKTPSVEILEQYSVVFKLPASSI 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|251788540|ref|YP_003003261.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247537161|gb|ACT05782.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 77

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
           R  R    +TQ  +    G  QS+I+++E G+  ++I   + ++  L      LL P
Sbjct: 16 LRAARIAQGVTQATLAQAFGKPQSFIAKIENGERRLDIVEFMHISRLLSLDPIALLHP 73


>gi|254786316|ref|YP_003073745.1| Helix-turn-helix [Teredinibacter turnerae T7901]
 gi|237686383|gb|ACR13647.1| Helix-turn-helix [Teredinibacter turnerae T7901]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 24 NNFRNIRKEA-KLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          NN R  R EA +++Q  +    G  +  IS +E  K + +++    +AH    
Sbjct: 8  NNIRRFRFEASEMSQASLAKAAGVTRQTISAIEANKYSPSLELAFRIAHVFGV 60


>gi|311739278|ref|ZP_07713115.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311305704|gb|EFQ81770.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 86

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 2  PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          PR K+ +P   +A++   +     F   R+E  + Q+++ +  G ++S +  +E G + +
Sbjct: 7  PRHKQGKPAGDNAVI---LGLGAQFAERRRELGILQQQLADAAGISRSTLHTIEHGGAGV 63

Query: 62 NIDNMIILAHTLDTPL 77
            + +  +A  L   +
Sbjct: 64 RWEKITAVAEALGLEM 79


>gi|255279936|ref|ZP_05344491.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
 gi|255269709|gb|EET62914.1| putative helix-turn-helix protein [Bryantella formatexigens DSM
          14469]
          Length = 642

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F       R++   TQ E+  +   ++S  +  ETG    + + +I +   LD  L 
Sbjct: 2  KTKFCEYLTMYRRQRGYTQAEMAEKLEISRSTYTNYETGNRAPDFETLIQIGDILDCSLD 61

Query: 79 KLL 81
          +L 
Sbjct: 62 ELF 64


>gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 132

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP      P      L          +  R+    +Q  +  R G +Q+ +++LE G S 
Sbjct: 1  MPIEAICIPVSLSGKLPAMSALGTRIKAERERRGWSQAALAQRAGISQTTVADLERGTSA 60

Query: 61 INIDNMIILAHTLDTPL 77
               +I +A  L    
Sbjct: 61 ATT-KLIPIARALKVNP 76


>gi|152972029|ref|YP_001337175.1| helix-turn-helix motif-containing protein [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|150956878|gb|ABR78908.1| putative regulator, helix-turn-helix motif [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
          Length = 200

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          SD     R +     +  RK  K++  E+  R   ++  + E+E   +  +I  +  LA 
Sbjct: 13 SDVDQVSRAV-ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAA 71

Query: 72 TLDTPLWKLL 81
           L   +  ++
Sbjct: 72 ALGVSVADIV 81


>gi|332360443|gb|EGJ38254.1| cro/CI family zinc-binding transcriptional regulator
          [Streptococcus sanguinis SK355]
          Length = 377

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ IF  +     R    LT+KE+  RTG ++  IS  E GK+      ++ +   LD P
Sbjct: 2  EQGIFSPSKLTKARIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFP 61


>gi|322374701|ref|ZP_08049215.1| transcriptional regulator, MerR family [Streptococcus sp. C300]
 gi|321280201|gb|EFX57240.1| transcriptional regulator, MerR family [Streptococcus sp. C300]
          Length = 110

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +RK+ K+TQ E+  +     ++I  +E     I ++ +  +   L+    +  
Sbjct: 13 RIRYLRKQKKMTQWELSEKANLGINYIYNIENKNLNIKLETLEKIIIALEVTEAEFF 69


>gi|322375254|ref|ZP_08049767.1| zinc-binding transcriptional regulator, Cro/CI family
          [Streptococcus sp. C300]
 gi|321279517|gb|EFX56557.1| zinc-binding transcriptional regulator, Cro/CI family
          [Streptococcus sp. C300]
          Length = 377

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 18 ERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ IF  +     R    LT+KE+  RTG ++  IS  E GK+      ++ +   LD P
Sbjct: 2  EQGIFSPSKLTKARIARGLTKKELAERTGISRQMISNYELGKTHPGASKLMTIVAELDFP 61


>gi|307250998|ref|ZP_07532924.1| hypothetical protein appser4_17620 [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
 gi|306857026|gb|EFM89156.1| hypothetical protein appser4_17620 [Actinobacillus
          pleuropneumoniae serovar 4 str. M62]
          Length = 137

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R+  +L+Q+ + ++ G + +  +++E G+   N+  +  ++   +  + +LL
Sbjct: 5  EKIRHLRETHQLSQEVMADKLGMSVTGYAKIERGEVRSNLPRLEQISEAFNMDICELL 62


>gi|300716262|ref|YP_003741065.1| transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062098|emb|CAX59214.1| Predicted transcriptional regulator [Erwinia billingiae Eb661]
          Length = 186

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 26/55 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               +++R   + +      +TG +++ + ++E G+S+  +  +  +A   + P
Sbjct: 6  LGQTLKSLRTSREWSLTMAAEQTGVSKAMLGQIERGESSPTVATLWKIATGFNVP 60


>gi|295980926|emb|CBJ57174.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 74

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRN-RTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  LTQ+ +        +S  S++E+G   I+ID++I LA   +  L  L+
Sbjct: 3  KRIRDLREDDDLTQEYVAKTILNCTRSAYSKMESGTRIISIDDLITLADFYNVSLDYLV 61


>gi|289773071|ref|ZP_06532449.1| DNA-binding protein [Streptomyces lividans TK24]
 gi|289703270|gb|EFD70699.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 489

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R++R+ A LTQ ++  R G+  S +S LE G     +  +  L   L+T
Sbjct: 31 FGRQLRSLRRAAGLTQLQLGLRVGYHHSVVSRLEAGLREPPVGLVRRLDAVLET 84


>gi|259047792|ref|ZP_05738193.1| Xre family toxin-antitoxin system, antitoxin component
          [Granulicatella adiacens ATCC 49175]
 gi|259035469|gb|EEW36724.1| Xre family toxin-antitoxin system, antitoxin component
          [Granulicatella adiacens ATCC 49175]
          Length = 64

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +RK A L Q+++    G ++  I  +E  K    ++  + +A  L   + ++ 
Sbjct: 3  NNIKQLRKAAGLRQEDMAKTLGVSRQTIIAIENDKYNPTLELAMKIARLLQLNVEEIF 60


>gi|257063020|ref|YP_003142692.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
 gi|256790673|gb|ACV21343.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
           20476]
          Length = 215

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 25  NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMIILAHTLDTPLWKLL 81
           N + +RK + LTQ+++   +G +   I + E  +  +   +++  + +A  L      LL
Sbjct: 151 NLKRLRKLSGLTQEQLAQLSGISVRTIQQYEQRRKDVNKASLETAVAIATVLHCSPSDLL 210

Query: 82  K 82
           +
Sbjct: 211 E 211


>gi|237733222|ref|ZP_04563703.1| predicted protein [Mollicutes bacterium D7]
 gi|229383766|gb|EEO33857.1| predicted protein [Coprobacillus sp. D7]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                +RK   L Q+E+    G   S IS  E+ +  I I+++  L+   +  +  L K
Sbjct: 4  GEKIHELRKNKGLLQEELGTLIGVDTSVISRWESSQRQIKIEDLTKLSDLFEVSVDYLAK 63


>gi|268592289|ref|ZP_06126510.1| MrfJ protein [Providencia rettgeri DSM 1131]
 gi|291312068|gb|EFE52521.1| MrfJ protein [Providencia rettgeri DSM 1131]
          Length = 106

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           I     R +RK+  ++ +++    G +Q   S  E G+  I++D +  ++  LD  + +
Sbjct: 7  KIVGARIRTLRKDQNMSIQQLSTLLGISQQHQSRHELGEIRIHVDTLYSISEILDLDIQE 66

Query: 80 LL 81
          L+
Sbjct: 67 LI 68


>gi|221639612|ref|YP_002525874.1| Helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides KD131]
 gi|221160393|gb|ACM01373.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131]
          Length = 428

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  +  R  R +  L Q ++    G + S+++ +E  +  I  + +  LA  L  
Sbjct: 1  MPMTALTGSRVRERRLQLGLRQADLARAAGISASYLNLIEHNRRRIGDEVLARLARALKV 60

Query: 76 PLWKL 80
              L
Sbjct: 61 EAQTL 65


>gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium
          zucineum HLK1]
 gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium
          zucineum HLK1]
          Length = 86

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 30/66 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE     N  + +R E   +Q ++  R G ++  ++ +ETGK   ++     +A     P
Sbjct: 17 REDAAMKNRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYDPSLPLAFRIARVFGLP 76

Query: 77 LWKLLK 82
          +  + +
Sbjct: 77 IEAIFE 82


>gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991]
 gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991]
          Length = 227

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +R I        RKE  LTQ+++    G     IS+ E GKS  +      L   L+  L
Sbjct: 4  QRKI-GIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDPSLYKPLCDILEINL 62

Query: 78 WKLL 81
           +L 
Sbjct: 63 IELF 66


>gi|149003138|ref|ZP_01828047.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
          SP14-BS69]
 gi|237651078|ref|ZP_04525330.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus
          pneumoniae CCRI 1974]
 gi|237821191|ref|ZP_04597036.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus
          pneumoniae CCRI 1974M2]
 gi|147758879|gb|EDK65875.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
          SP14-BS69]
          Length = 207

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R++ +L+QKEI    GF+      +E G+S I  +    LA      +  LL
Sbjct: 2  NRLKELRQKNELSQKEIAEILGFSLRSFQRMENGESQIKPEKAQQLADFFGVSVGYLL 59


>gi|126733799|ref|ZP_01749546.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [Roseobacter sp. CCS2]
 gi|126716665|gb|EBA13529.1| Transcriptional Regulator of molybdate metabolism, XRE family
          protein [Roseobacter sp. CCS2]
          Length = 68

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R +AKLTQ E+ +  G ++  I+ +E G  T +    + LA  L   +  L 
Sbjct: 9  LRAHRTQAKLTQAELADLVGVSRKTINTIENGVFTPSTTLALTLADQLGCSVHDLF 64


>gi|116871799|ref|YP_848580.1| DNA-binding domain-containing protein [Listeria welshimeri
          serovar 6b str. SLCC5334]
 gi|116740677|emb|CAK19797.1| DNA-binding domain protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 67

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + IR E  ++Q ++      ++  I  +E GK   +++  + +A      + ++ K
Sbjct: 5  NKVKEIRTEKGISQTDLALTLEVSRQTIHAIEKGKYNPSLELSLKMAQYFHLTIEEIFK 63


>gi|116490218|ref|YP_809762.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1]
 gi|290889597|ref|ZP_06552687.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429]
 gi|116090943|gb|ABJ56097.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1]
 gi|290480795|gb|EFD89429.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429]
          Length = 178

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    + ++ R    LTQ ++  +    +  +S  E GK+  NI  +  L       L  
Sbjct: 1  MSLGESLKSARNAVGLTQDQVAKKMYVTRQTVSRWEQGKTLPNIYVLRELKQLYGLSLDN 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|126698483|ref|YP_001087380.1| putative phage regulatory protein [Clostridium difficile 630]
 gi|115249920|emb|CAJ67740.1| Transcriptional regulator, Phage-type [Clostridium difficile]
          Length = 110

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F N  R +RK+  LTQ E+      + S I+ LET K     ++++  +   D  +  L
Sbjct: 1  MFSNRLRELRKQKGLTQMELAKLLNCSLSKIAMLETDKRDPVKEDLLRFSEIFDVSIDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|91792783|ref|YP_562434.1| transciptional regulator [Shewanella denitrificans OS217]
 gi|91714785|gb|ABE54711.1| transcriptional regulator, XRE family [Shewanella denitrificans
          OS217]
          Length = 69

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          NN R +R     +TQK++ +  G  +  +  +E  K + +++    +A     PL ++ +
Sbjct: 5  NNVRTLRFLQGEMTQKQLADVIGVTRQTVMAIEASKYSPSLEVAFKIAAVFHLPLEQVFQ 64


>gi|322390898|ref|ZP_08064406.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis
          ATCC 903]
 gi|321142411|gb|EFX37881.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis
          ATCC 903]
          Length = 108

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 25/54 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             R +R ++ +TQ+++  +     ++  +LE  +  I I  +  +   L+  L
Sbjct: 10 KRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIEALNVDL 63


>gi|320330709|gb|EFW86684.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +R E  LT + +    G     +S++E  +   ++D +  L+  L T   +L
Sbjct: 4  GAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSEL 61


>gi|312897912|ref|ZP_07757326.1| helix-turn-helix protein [Megasphaera micronuciformis F0359]
 gi|310621007|gb|EFQ04553.1| helix-turn-helix protein [Megasphaera micronuciformis F0359]
          Length = 125

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R+E  ++Q ++  +TG+ ++S I+++E GK  I+   + + A  L      L+
Sbjct: 6  ERIRRLRQENNMSQDKLAKKTGYTSRSTINKIEAGKIDISRAKIKVFADALGVTPAYLM 64


>gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 196

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +R+E K+ Q ++    G     IS  E G+   +   ++ LA   +     L
Sbjct: 10 LMSQRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFL 69

Query: 81 L 81
          L
Sbjct: 70 L 70


>gi|291003078|ref|ZP_06561051.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
          Length = 277

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  + +R  A LT  ++ +R G+ Q  +S++E+ K  + ID +I LA        
Sbjct: 8  RRVLASELKRLRLSAGLTHVDVAHRLGWQQGKVSKIESAKQGVGIDAVIALAEVCGATPQ 67

Query: 79 K 79
          +
Sbjct: 68 Q 68


>gi|259047659|ref|ZP_05738060.1| transcriptional regulator [Granulicatella adiacens ATCC 49175]
 gi|259035850|gb|EEW37105.1| transcriptional regulator [Granulicatella adiacens ATCC 49175]
          Length = 138

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 27/54 (50%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +RK    +Q+EI  +   ++    + E+G++  +I+   ILA      +  L++
Sbjct: 2  LRKLKDFSQEEIAEKIDISRQAYGKWESGETIPDIEKCAILADVYGVTIDSLIR 55


>gi|253569690|ref|ZP_04847099.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840071|gb|EES68153.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 91

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 23/44 (52%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E  +TQ+ +  +    Q ++S++  G+  ++++ +  + + L  
Sbjct: 45 ELSMTQRALAEKMNCTQQYVSKVLKGRENLSLETLCKIENALGI 88


>gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
 gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium
          cellulovorans 743B]
 gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans
          743B]
          Length = 296

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N  +++RK    TQKE+ +  G  Q+ ++  E G    + + +  +A   +  L  LL
Sbjct: 5  LANRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGTRIPDTEKLNKMADLFEVTLDYLL 64


>gi|262194471|ref|YP_003265680.1| XRE family transcriptional regulator [Haliangium ochraceum DSM
          14365]
 gi|262077818|gb|ACY13787.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM
          14365]
          Length = 79

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           N  R+ RK   LTQ++   R      +   +E G +  ++  +  LA    
Sbjct: 10 GNAVRDGRKAFGLTQEQAAERLDICVDYYGRVERGAAIPSVSMLRRLAVAFG 61


>gi|224537568|ref|ZP_03678107.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224520810|gb|EEF89915.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 191

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +++  R+G A   I  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|239825658|ref|YP_002948282.1| XRE family transcriptional regulator [Geobacillus sp. WCH70]
 gi|239805951|gb|ACS23016.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E   +    R  RK    TQ+ +    G + S + E+E G    +   +  +A  L+  +
Sbjct: 2  EAEKWGRRIRAFRKLKGYTQERLAKDLGVSVSILGEVERGNRLPSEQLIEKIAERLNISV 61

Query: 78 WKLLKP 83
           +L  P
Sbjct: 62 EELAPP 67


>gi|124267559|ref|YP_001021563.1| XRE family transcriptional regulator [Methylibium petroleiphilum
          PM1]
 gi|124260334|gb|ABM95328.1| transcriptional regulator, XRE family [Methylibium petroleiphilum
          PM1]
          Length = 107

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
               R +RKE KLT +++ +  G ++S++ ELE  +S   + + +  LA  L  
Sbjct: 5  LGEKLRELRKERKLTLEKLADAAGLSKSYLWELENRESQRPSAEKLTALADALGV 59


>gi|49480398|ref|YP_039247.1| transcriptional regulator, DNA-binding protein [Bacillus
          thuringiensis serovar konkukian str. 97-27]
 gi|49331954|gb|AAT62600.1| transcriptional regulator, DNA-binding protein [Bacillus
          thuringiensis serovar konkukian str. 97-27]
          Length = 63

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  RK   L+Q E+  R   A+  I+ +E  K   ++   I LA  L T L  L 
Sbjct: 2  NKVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59


>gi|78224628|ref|YP_386375.1| XRE family transcriptional regulator [Geobacter metallireducens
          GS-15]
 gi|78195883|gb|ABB33650.1| transcriptional regulator, XRE family [Geobacter metallireducens
          GS-15]
          Length = 198

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              + +      R +R+E +LT +E+   +G ++  +S++E  + T  I  ++ ++  L
Sbjct: 7  KSQIKELRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGL 66

Query: 74 DT 75
            
Sbjct: 67 KV 68


>gi|325261695|ref|ZP_08128433.1| HTH DNA-binding protein [Clostridium sp. D5]
 gi|324033149|gb|EGB94426.1| HTH DNA-binding protein [Clostridium sp. D5]
          Length = 71

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +RKE ++TQ E+ +     +  I  LE G+   ++     +A      +  + 
Sbjct: 3  NKIQQLRKERRITQSELADAVEVTRQTIISLENGRYNASLILAHKIAQYFGVNIEDIF 60


>gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp.
          infantis 157F]
 gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp.
          infantis 157F]
          Length = 161

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  LTQ +  +     Q  +S  E G +  +ID + +++   + P+ +
Sbjct: 1  MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|309805573|ref|ZP_07699617.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308165112|gb|EFO67351.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
           09V1-c]
          Length = 144

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTG-FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F  N + +RK+  + Q E+  + G  + S ISE E G  T  I  +  +A      L  
Sbjct: 53  MFSTNLKYLRKKYNMEQLELAYKLGRKSGSTISEWEKGSYTPKIKVLAQIADIFHVDLDD 112

Query: 80  LL 81
           L+
Sbjct: 113 LM 114


>gi|300119011|ref|ZP_07056722.1| transcriptional regulator, PBSX family protein [Bacillus cereus
          SJ1]
 gi|298723627|gb|EFI64358.1| transcriptional regulator, PBSX family protein [Bacillus cereus
          SJ1]
          Length = 83

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 14 QVRRNGVKNQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73

Query: 76 PLWKLL 81
           + KL 
Sbjct: 74 TVDKLF 79


>gi|291436130|ref|ZP_06575520.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339025|gb|EFE65981.1| DNA-binding protein [Streptomyces ghanaensis ATCC 14672]
          Length = 273

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
                         R  R++ +++Q E+  R   +   IS +ETG+S  + + ++ LA 
Sbjct: 5  PSGTAPAAEGVGPLLRAWREQRRISQLELALRADSSARHISFIETGRSRPSEEMVLRLAE 64

Query: 72 TLDTPLWK 79
           LD P+ +
Sbjct: 65 HLDVPVRE 72


>gi|238790346|ref|ZP_04634118.1| DNA-binding phage-related protein [Yersinia frederiksenii ATCC
          33641]
 gi|238721533|gb|EEQ13201.1| DNA-binding phage-related protein [Yersinia frederiksenii ATCC
          33641]
          Length = 90

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R   +   +  R++  LTQ+E+  R G  +  IS +E G  + N+  +   A  L 
Sbjct: 18 RQAMMTELKAARQQCHLTQEEVAQRAGLKKQNISRMEKGIISPNLTTLSRYAAALG 73


>gi|228477738|ref|ZP_04062367.1| conserved domain protein [Streptococcus salivarius SK126]
 gi|228250627|gb|EEK09838.1| conserved domain protein [Streptococcus salivarius SK126]
          Length = 69

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    L Q E+    G ++  IS LE G+ T ++   I +A     P+  + 
Sbjct: 5  NRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTPSVIIAITIAQVFKEPVENVF 62


>gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia
          coli UMN026]
 gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia
          coli UMN026]
 gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   ++    G   + IS LETGK     +  +  +A +L   +  L 
Sbjct: 4  GNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIADLF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11]
 gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11]
 gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1]
 gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   ++    G   + IS LETGK     +  +  +A +L   +  L 
Sbjct: 4  GNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIADLF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|187940017|gb|ACD39152.1| hypothetical protein PACL_0364 [Pseudomonas aeruginosa]
          Length = 112

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M    N R  R+   L Q+++    G   S     E GK     D +  +A TL     +
Sbjct: 1  MAIGENIRKARERKGLRQEQVAEMAGIPLSTYKNYEHGKQPPPGDRIGAIARTLGVSADE 60

Query: 80 LL 81
          L+
Sbjct: 61 LV 62


>gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869]
 gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia
          coli O157:H7 str. FRIK2000]
 gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia
          coli O157:H7 str. FRIK966]
 gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591]
 gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299]
 gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869]
 gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1]
 gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407]
 gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591]
 gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID-NMIILAHTLDTPLWKLL 81
           N  R +R+   +   ++    G   + IS LETGK     +  +  +A +L   +  L 
Sbjct: 4  GNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIADLF 63

Query: 82 K 82
           
Sbjct: 64 T 64


>gi|182684924|ref|YP_001836671.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae CGSP14]
 gi|303254087|ref|ZP_07340202.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS455]
 gi|303260363|ref|ZP_07346333.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP-BS293]
 gi|303262511|ref|ZP_07348453.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP14-BS292]
 gi|303265142|ref|ZP_07351055.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS397]
 gi|303265996|ref|ZP_07351891.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS457]
 gi|303268072|ref|ZP_07353873.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS458]
 gi|182630258|gb|ACB91206.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae CGSP14]
 gi|301802667|emb|CBW35433.1| putative DNA-binding protein [Streptococcus pneumoniae INV200]
 gi|302598920|gb|EFL65951.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS455]
 gi|302636411|gb|EFL66904.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP14-BS292]
 gi|302638529|gb|EFL68994.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP-BS293]
 gi|302642432|gb|EFL72778.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS458]
 gi|302644437|gb|EFL74689.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS457]
 gi|302645359|gb|EFL75593.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae BS397]
          Length = 299

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|225164574|ref|ZP_03726822.1| putative transcriptional regulator, XRE family [Opitutaceae
           bacterium TAV2]
 gi|224800811|gb|EEG19159.1| putative transcriptional regulator, XRE family [Opitutaceae
           bacterium TAV2]
          Length = 120

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           E  +     R  RK   LTQ  +     + QS I+++E G+  +++   I +A  +    
Sbjct: 39  ENDVLRQTLRQERKRLGLTQAAVAEACRWEQSVIAKIEQGERRVDVVEFIWMAEAMRLKP 98

Query: 78  WKLLK 82
            +L +
Sbjct: 99  ERLFR 103


>gi|150395536|ref|YP_001326003.1| hypothetical protein Smed_0309 [Sinorhizobium medicae WSM419]
 gi|150027051|gb|ABR59168.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419]
          Length = 470

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E  IF     R IR   +LTQ  +    G + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ENKIFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYRID 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 177

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +     R  R+    +Q ++   +G     I + E G      D +  +A  L 
Sbjct: 1  MVGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALG 54


>gi|323435994|ref|ZP_01049570.2| transcription regulator [Dokdonia donghaensis MED134]
 gi|321496309|gb|EAQ39542.2| transcription regulator [Dokdonia donghaensis MED134]
          Length = 274

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                 +R++  LTQ+E+  +   +   I  +E G++   +  +  +   LD  L  L
Sbjct: 7  LGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIKTILSALDRDLDDL 65


>gi|317123049|ref|YP_004103052.1| XRE family transcriptional regulator [Thermaerobacter marianensis
          DSM 12885]
 gi|315593029|gb|ADU52325.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM
          12885]
          Length = 193

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
               R IR+   L+  E+  RTG   + IS+ E  +   ++D +  LA   + P
Sbjct: 4  LGGRLRRIRESRNLSIYEVERRTGMHFTTISKYERNERQPSLDVLRELAALYEVP 58


>gi|301793782|emb|CBW36171.1| putative uncharacterized protein [Streptococcus pneumoniae
          INV104]
 gi|332204607|gb|EGJ18672.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47901]
          Length = 88

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETG+S++ +D ++ +  +L   L
Sbjct: 20 RVAIMSELIEARYEQGISQKKLEEVSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTL 78


>gi|256789178|ref|ZP_05527609.1| DNA-binding protein [Streptomyces lividans TK24]
          Length = 473

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F    R++R+ A LTQ ++  R G+  S +S LE G     +  +  L   L+T
Sbjct: 15 FGRQLRSLRRAAGLTQLQLGLRVGYHHSVVSRLEAGLREPPVGLVRRLDAVLET 68


>gi|302873667|ref|YP_003842300.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307686609|ref|ZP_07629055.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576524|gb|ADL50536.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 116

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 30/58 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                +RK+  +TQ+E+ N +G ++  I+++E  +  ++++  + +A      +  L
Sbjct: 7  GEVISGLRKQKGMTQEELGNMSGLSRVIIAKIENNQRAVSLEEAVNIAKVFAIDVATL 64


>gi|302873656|ref|YP_003842289.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|307686620|ref|ZP_07629066.1| helix-turn-helix domain-containing protein [Clostridium
          cellulovorans 743B]
 gi|302576513|gb|ADL50525.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B]
          Length = 140

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
          M F    + +R E  L+Q+++ + +  + + IS +E+G+    +   +  +A  L     
Sbjct: 1  MSFGEFLKKLRAEKGLSQRQLADLSKISNTEISRMESGERQKPSPKILKEIAPHLGISYR 60

Query: 79 KLL 81
          +L+
Sbjct: 61 ELM 63


>gi|296125837|ref|YP_003633089.1| XRE family transcriptional regulator [Brachyspira murdochii DSM
          12563]
 gi|296017653|gb|ADG70890.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM
          12563]
          Length = 213

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 26/44 (59%)

Query: 38 KEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          K++  + G + S +S++E G +  +++ +  +A  L+ P+++  
Sbjct: 51 KDLAKKCGISSSMLSQIEKGNANPSLNTIKSIAKELEVPIFQFF 94


>gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum
          NCIMB 41171]
 gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
          41171]
 gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
          41171]
          Length = 161

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  LTQ +  +     Q  +S  E G +  +ID + +++   + P+ +
Sbjct: 1  MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMPR 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|163868981|ref|YP_001610211.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
 gi|161018658|emb|CAK02216.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
          Length = 129

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+ R    L+QK + N  G +   I + E G + ++   ++ +A  L  P+
Sbjct: 21 GARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPI 75


>gi|118574103|sp|Q8TZX4|Y1851_PYRFU RecName: Full=Putative HTH-type transcriptional regulatory protein
           PF1851
          Length = 315

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R +R++   +  E+    G ++  +   E G+  ++ID  I L    D PL K
Sbjct: 128 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPLVK 184


>gi|53724684|ref|YP_102063.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121600848|ref|YP_994013.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124384800|ref|YP_001028323.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126450213|ref|YP_001081967.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|167004339|ref|ZP_02270099.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20]
 gi|238562539|ref|ZP_00440248.2| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|254176797|ref|ZP_04883454.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|254208723|ref|ZP_04915071.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU]
 gi|52428107|gb|AAU48700.1| DNA-binding protein [Burkholderia mallei ATCC 23344]
 gi|121229658|gb|ABM52176.1| DNA-binding protein [Burkholderia mallei SAVP1]
 gi|124292820|gb|ABN02089.1| DNA-binding protein [Burkholderia mallei NCTC 10229]
 gi|126243083|gb|ABO06176.1| DNA-binding protein [Burkholderia mallei NCTC 10247]
 gi|147750599|gb|EDK57668.1| DNA-binding/cupin domain protein [Burkholderia mallei JHU]
 gi|160697838|gb|EDP87808.1| DNA-binding protein [Burkholderia mallei ATCC 10399]
 gi|238522411|gb|EEP85855.1| DNA-binding protein [Burkholderia mallei GB8 horse 4]
 gi|243060323|gb|EES42509.1| DNA-binding/cupin domain protein [Burkholderia mallei PRL-20]
          Length = 222

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +   
Sbjct: 35 LVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 94

Query: 81 LK 82
          L+
Sbjct: 95 LR 96


>gi|15901812|ref|NP_346416.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae TIGR4]
 gi|111658875|ref|ZP_01409496.1| hypothetical protein SpneT_02000046 [Streptococcus pneumoniae
          TIGR4]
 gi|14973497|gb|AAK76056.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae
          TIGR4]
          Length = 299

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|18978223|ref|NP_579580.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638]
 gi|18894036|gb|AAL81975.1| hypothetical protein PF1851 [Pyrococcus furiosus DSM 3638]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R +R++   +  E+    G ++  +   E G+  ++ID  I L    D PL K
Sbjct: 129 GERLRELREKYGYSTTELAEMLGVSRKSVQRYEKGEGMVSIDVAIRLEEIFDEPLVK 185


>gi|89893376|ref|YP_516863.1| hypothetical protein DSY0630 [Desulfitobacterium hafniense Y51]
 gi|219666666|ref|YP_002457101.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89332824|dbj|BAE82419.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536926|gb|ACL18665.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             RN+R++  +TQ +I       Q+  S+ E GK  I +  +  +A    T +  L+
Sbjct: 3  ERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQVLGKIADLFGTSIDYLV 60


>gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis
          AJ13355]
          Length = 203

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K    H  D    E  I     + IRK   +T KE+  +   +   IS++E   +   + 
Sbjct: 4  KTALMHSEDLSAVEINI-GVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVR 62

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  L   L+ PL   L+
Sbjct: 63 VLEQLRVVLNVPLTAFLE 80


>gi|317474810|ref|ZP_07934084.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
 gi|316909491|gb|EFV31171.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii
          1_2_48FAA]
          Length = 98

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  R E +L QK+++  TG   + +S LE G+   + + +  LA        +LL
Sbjct: 4  FGDLIKEARIERELDQKDVQMETGIDYTLLSRLEKGERLPSKEQVYHLADFYSIKRRELL 63


>gi|313673033|ref|YP_004051144.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens
          DSM 19672]
 gi|312939789|gb|ADR18981.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens
          DSM 19672]
          Length = 187

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 29/68 (42%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I   +       RN+RK   +T +++    G  +S++S LE  K+  ++  +  +    +
Sbjct: 2  IEVNKSYISKKIRNLRKSQGITLEQLAKAIGKTKSYVSMLENEKAIPSLSTLKEIVSFFN 61

Query: 75 TPLWKLLK 82
            +    +
Sbjct: 62 MTIADFFE 69


>gi|308271732|emb|CBX28340.1| hypothetical protein N47_G36640 [uncultured Desulfobacterium sp.]
          Length = 98

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 4  RKRDEPHLSDAILRERMIF--VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          RK+  P       +    F      +  R EA LTQ+E+ +     +S IS +E     I
Sbjct: 18 RKKKSPSFGKNFDKGYEQFKIGVLLKQARLEAGLTQEEVASILNTRKSAISRIENHAEDI 77

Query: 62 NIDNMIILAHTLDTPL 77
           +  ++  A  +   L
Sbjct: 78 RLSTLVNYAQAVGKNL 93


>gi|295106455|emb|CBL03998.1| Predicted transcriptional regulator with C-terminal CBS domains
          [Gordonibacter pamelaeae 7-10-1-b]
          Length = 104

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
                D+     +I   N   +RK+AK+T+++        + +++ +E G +   +  +
Sbjct: 11 ASHAALDSRNEASVILGRNVTRLRKQAKITKQKFALMVDVGRPFLNRIENGTADPRLSVI 70

Query: 67 IILAHTLDTPLWKLLK 82
          + LA  L+T   +LL 
Sbjct: 71 LRLAEALETTPQELLT 86


>gi|227553860|ref|ZP_03983907.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177015|gb|EEI57987.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 108

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 30/59 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + +R +     ++ R E  ++Q ++    G ++ +++++E G  T +   M  + + L+
Sbjct: 1  MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLE 59


>gi|218460197|ref|ZP_03500288.1| probable transcriptional regulator protein [Rhizobium etli Kim 5]
          Length = 215

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 18 ERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          ER IF     R IR    LTQ  +      + S+++ +E  +  + +  ++ LA      
Sbjct: 3  ERKIFAGPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVD 62

Query: 77 LWKL 80
          L +L
Sbjct: 63 LEEL 66


>gi|170722460|ref|YP_001750148.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169760463|gb|ACA73779.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 114

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                 R+  +LTQ ++      +   +S LE G+  +++  ++ LA     P  +LL
Sbjct: 12 GRQLAAYRRACRLTQAKVGEYLKISGEAVSRLERGEVELSVSKLLKLADLYGCPADELL 70


>gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf]
 gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str.
          657]
 gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf]
 gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+++ N  G +++ +S+ E+G S  +I  +  LA   +  + +LL
Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISMDELL 65


>gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264]
 gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDELI 65


>gi|163740881|ref|ZP_02148274.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385872|gb|EDQ10248.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10]
          Length = 462

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R    LTQKE   + G +  +++++E     ++   ++ LA      +
Sbjct: 4  QKLYAGAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDV 63

Query: 78 WKL 80
           +L
Sbjct: 64 TEL 66


>gi|144897602|emb|CAM74466.1| transcriptional regulator [Magnetospirillum gryphiswaldense
          MSR-1]
          Length = 149

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 4  RKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          R R E    D I           R  R    L+Q E+    G     + + E+G + I+ 
Sbjct: 12 RARTESGDPDPIDTH---VGARLRLRRTLMGLSQTELAKSVGLTFQQVQKYESGANRISA 68

Query: 64 DNMIILAHTLDTP 76
            +  ++  LD P
Sbjct: 69 SRLYHISEALDVP 81


>gi|114569125|ref|YP_755805.1| XRE family transcriptional regulator [Maricaulis maris MCS10]
 gi|114339587|gb|ABI64867.1| transcriptional regulator, XRE family [Maricaulis maris MCS10]
          Length = 164

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +++R E   +Q+++   +G +   I   E G+ T +++ +  LA + D    +L
Sbjct: 3  LKSLRLEKGWSQEQLATISGLSDRTIQRAERGE-TPSLETVRALAASFDLSSAQL 56


>gi|72161135|ref|YP_288792.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Thermobifida fusca YX]
 gi|71914867|gb|AAZ54769.1| helix-turn-helix motif [Thermobifida fusca YX]
          Length = 418

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E + F    R +R EA  +  ++     +++S +S++ETG+ + + D    LA   DT L
Sbjct: 4  ENVSFGAELRRLRTEAGWSLADLAEAVHYSKSHLSKVETGRKSPSAD----LARACDTAL 59


>gi|21244014|ref|NP_643596.1| hypothetical protein XAC3288 [Xanthomonas axonopodis pv. citri
          str. 306]
 gi|21109631|gb|AAM38132.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 112

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW-----ISELETGKSTINIDN 65
          +         ++    RN R     TQ E+  R G   S      +S  ETG+   +   
Sbjct: 1  MPKPKTPA-TVYGTRLRNARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPAT 59

Query: 66 MIILAHTLDTP 76
             LA  LD P
Sbjct: 60 AEALAKALDLP 70


>gi|37527450|ref|NP_930794.1| hypothetical protein plu3581 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37527459|ref|NP_930803.1| hypothetical protein plu3590 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786885|emb|CAE15954.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36786894|emb|CAE15963.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 128

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    +  R+  K+TQ  +       +   +  E G S   +D ++ +A  L + L  
Sbjct: 15 QLFATRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSLDS 74

Query: 80 LL 81
          L+
Sbjct: 75 LV 76


>gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family
          S24 [Magnetococcus sp. MC-1]
 gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24
          [Magnetococcus sp. MC-1]
          Length = 220

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLW 78
            R  R+ A  TQKE+ +R   +Q+ I +LE G+S  +    + +A      P+W
Sbjct: 6  RIRTAREYAGFTQKELADRVDISQTAIHKLECGRSRSSRRT-VAIALACGVNPIW 59


>gi|330877739|gb|EGH11888.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str.
          M302280PT]
 gi|330965172|gb|EGH65432.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str.
          M302091]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63


>gi|319939025|ref|ZP_08013389.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV]
 gi|319812075|gb|EFW08341.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV]
          Length = 115

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          R       R +R E  +TQ+++  R     +++ +LE     + I+ +  +   L+ 
Sbjct: 13 RDYIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEV 69


>gi|302545070|ref|ZP_07297412.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302462688|gb|EFL25781.1| xre family toxin-antitoxin system, antitoxin component
           [Streptomyces himastatinicus ATCC 53653]
          Length = 282

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 5   KRDEPHLSDAILRE----RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
           + D    +D    E       F    + +R+E  LTQ++   R  ++ ++++++E G+  
Sbjct: 79  RDDVRMGADNSEPEVSDNLKTFGAVLKALREEGGLTQEQFAPRVRYSVTYVAKMEQGRRF 138

Query: 61  INIDNMIILAHTLDTPLWKLL 81
              + +  +   L  P  ++L
Sbjct: 139 PPKELVPRVKDVLGAPAARVL 159


>gi|289671657|ref|ZP_06492547.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae FF5]
 gi|302187361|ref|ZP_07264034.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. syringae 642]
 gi|330941463|gb|EGH44274.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954133|gb|EGH54393.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae Cit 7]
 gi|330970149|gb|EGH70215.1| helix-hairpin-helix DNA-binding motif-containing protein
          [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63


>gi|289626698|ref|ZP_06459652.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str.
          NCPPB3681]
 gi|289646258|ref|ZP_06477601.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866821|gb|EGH01530.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str.
          0893_23]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63


>gi|260426951|ref|ZP_05780930.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
 gi|260421443|gb|EEX14694.1| transcriptional regulator, XRE family [Citreicella sp. SE45]
          Length = 463

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 16 LRERMIF-VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +  R ++     R++R    LTQK+   + G +  +++++E     ++   ++ LA    
Sbjct: 1  MPTRKLYAGAKLRDLRGRLGLTQKDFAGKLGISLPYLNQMENNNRPVSTTVVLALAQEFG 60

Query: 75 TPLWKL 80
            + +L
Sbjct: 61 FDVTEL 66


>gi|255973367|ref|ZP_05423953.1| predicted protein [Enterococcus faecalis T2]
 gi|256962505|ref|ZP_05566676.1| predicted protein [Enterococcus faecalis HIP11704]
 gi|255966239|gb|EET96861.1| predicted protein [Enterococcus faecalis T2]
 gi|256953001|gb|EEU69633.1| predicted protein [Enterococcus faecalis HIP11704]
          Length = 78

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M+  N  +  R    LTQK++  + G  +  IS +E  K   +++    LA+ LD  +  
Sbjct: 7  MLQGNQLKKWRDRRNLTQKQLAMKIGCQRMTISRIEQEKQKPSLELAYSLANALDLKIED 66

Query: 80 LL 81
          L 
Sbjct: 67 LF 68


>gi|255014195|ref|ZP_05286321.1| putative regulatory protein [Bacteroides sp. 2_1_7]
 gi|298374673|ref|ZP_06984631.1| regulatory protein [Bacteroides sp. 3_1_19]
 gi|298269041|gb|EFI10696.1| regulatory protein [Bacteroides sp. 3_1_19]
          Length = 82

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + + KE  +T  E+ ++ G  +  +S +  G     ++ +  +A  +  P+ +L +
Sbjct: 4  RIKEVIKEKGMTITELADKMGINRVNLSNMVNG--NPTVETLNKIADAIGCPVTELFE 59


>gi|225861807|ref|YP_002743316.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230083|ref|ZP_06963764.1| transcriptional activator [Streptococcus pneumoniae str. Canada
          MDR_19F]
 gi|298255252|ref|ZP_06978838.1| transcriptional activator [Streptococcus pneumoniae str. Canada
          MDR_19A]
 gi|298503760|ref|YP_003725700.1| transcriptional regulator PlcR [Streptococcus pneumoniae
          TCH8431/19A]
 gi|225726713|gb|ACO22564.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14]
 gi|298239355|gb|ADI70486.1| transcriptional regulator PlcR [Streptococcus pneumoniae
          TCH8431/19A]
 gi|327389153|gb|EGE87499.1| transcriptional activator [Streptococcus pneumoniae GA04375]
          Length = 299

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|211639114|emb|CAR67726.1| transcriptional regulator [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|211639120|emb|CAR67732.1| Putative phage regulatory protein [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
          Length = 128

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    +  R+  K+TQ  +       +   +  E G S   +D ++ +A  L + L  
Sbjct: 15 QLFAKRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSLDA 74

Query: 80 LL 81
          L+
Sbjct: 75 LV 76


>gi|229815042|ref|ZP_04445379.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM
          13280]
 gi|229809272|gb|EEP45037.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM
          13280]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI     +  RKE  ++Q ++ +    +++ +S  E G +T +I +++++       L +
Sbjct: 1  MILSEQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTTPDIQSLVLMGALFGLSLDE 60

Query: 80 LLK 82
          ++K
Sbjct: 61 MVK 63


>gi|251798721|ref|YP_003013452.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247546347|gb|ACT03366.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 114

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWK 79
          F    R IR++      E     G + +++S LETGK  TI +D +  L   L   + +
Sbjct: 4  FGQQLRQIRQQKGYGLNEFAKELGVSPAYLSNLETGKTQTIQLDILSKLQEQLHLSVNE 62


>gi|163737438|ref|ZP_02144855.1| transcriptional regulator, XRE family protein [Phaeobacter
          gallaeciensis BS107]
 gi|161388964|gb|EDQ13316.1| transcriptional regulator, XRE family protein [Phaeobacter
          gallaeciensis BS107]
          Length = 462

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++      R +R    LTQKE   + G +  +++++E     ++   ++ LA      +
Sbjct: 4  QKLYAGAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDV 63

Query: 78 WKL 80
           +L
Sbjct: 64 TEL 66


>gi|163747403|ref|ZP_02154756.1| transcriptional regulator, XRE family protein [Oceanibulbus
          indolifex HEL-45]
 gi|161379381|gb|EDQ03797.1| transcriptional regulator, XRE family protein [Oceanibulbus
          indolifex HEL-45]
          Length = 85

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + R +A L Q E+  +    QS I+ LE+G+  +++  +++LA  +    +++L
Sbjct: 15 QALVDARIKAGLGQDELATKLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPFEVL 72


>gi|154687569|ref|YP_001422730.1| Slr [Bacillus amyloliquefaciens FZB42]
 gi|308175181|ref|YP_003921886.1| HTH-type transcriptional regulator slrR [Bacillus
          amyloliquefaciens DSM 7]
 gi|154353420|gb|ABS75499.1| Slr [Bacillus amyloliquefaciens FZB42]
 gi|307608045|emb|CBI44416.1| HTH-type transcriptional regulator slrR [Bacillus
          amyloliquefaciens DSM 7]
 gi|328555152|gb|AEB25644.1| HTH-type transcriptional regulator slrR [Bacillus
          amyloliquefaciens TA208]
 gi|328913510|gb|AEB65106.1| HTH-type transcriptional regulator slrR [Bacillus
          amyloliquefaciens LL3]
          Length = 151

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWK 79
          +     R  R+    +  ++    G ++S++S++E G  S  +I  +  ++ TL   L +
Sbjct: 1  MIGRIIRLYRRRKGYSINQLAVEAGVSKSYLSKIERGVHSNPSIQFLKKVSATLQVDLTE 60

Query: 80 LL 81
          L 
Sbjct: 61 LF 62


>gi|85707455|ref|ZP_01038535.1| hypothetical protein ROS217_02905 [Roseovarius sp. 217]
 gi|85668043|gb|EAQ22924.1| hypothetical protein ROS217_02905 [Roseovarius sp. 217]
          Length = 85

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + R +A L Q E+  +    QS I+ LE+G+  +++  +++LA  +    +++L
Sbjct: 15 QALVDARIKAGLGQDELATKLRCHQSLIARLESGQRRVDVVELVVLARAIGFDPFEVL 72


>gi|312130932|ref|YP_003998272.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM
          17132]
 gi|311907478|gb|ADQ17919.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM
          17132]
          Length = 120

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          ++    R IR+   L+Q+ + +    +QS  S  E+ K  I  + +  +A  L+     +
Sbjct: 1  MYGAKIRMIREMRGLSQENVADELDISQSTYSLYESDKIKITGEMIEKIASVLNVSPLDI 60

Query: 81 L 81
          +
Sbjct: 61 M 61


>gi|310819937|ref|YP_003952295.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309393009|gb|ADO70468.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 115

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 27 RNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R  R++  LTQ ++  R G A +  S +E G+   ++D M  L   L      L+
Sbjct: 14 RLAREQMSLTQVQVAERVGLAPAVYSRIERGQMIPSVDTMRKLCVELMVSPEDLM 68


>gi|302390667|ref|YP_003826488.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
 gi|302201295|gb|ADL08865.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM
          16646]
          Length = 114

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 +  RK+  LTQ ++    G  +  +S  ETG   INI  +  LA+   
Sbjct: 7  KSLGERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLYG 61


>gi|269127981|ref|YP_003301351.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268312939|gb|ACY99313.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           R  + P   ++ L  R  F    R +R++   + +E+ N+   + S++S LE G  + +
Sbjct: 10 GRPPN-PIDPNSSLAAR--FGWKIRTLREQRGWSLEELGNKVACSASYLSRLERGVKSPD 66

Query: 63 IDNMIILAHTLDT----PLWKLL 81
                L   L T      W+L+
Sbjct: 67 EAVARQLDAALGTTYFSEHWQLV 89


>gi|242241229|ref|YP_002989410.1| hypothetical protein Dd703_3835 [Dickeya dadantii Ech703]
 gi|242133286|gb|ACS87588.1| protein of unknown function DUF955 [Dickeya dadantii Ech703]
          Length = 370

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +N R  R   +L+ +++  R    + +I  LE+G +    D    LA  L  
Sbjct: 4  GSNLRLARLYHELSLEQVAERVDKTRQYIQRLESGSAVPTPDLANKLAAVLLV 56


>gi|257791632|ref|YP_003182238.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|317487901|ref|ZP_07946493.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA]
 gi|325830585|ref|ZP_08164006.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475529|gb|ACV55849.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|316913027|gb|EFV34544.1| hypothetical protein HMPREF1023_00191 [Eggerthella sp. 1_3_56FAA]
 gi|325487331|gb|EGC89773.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 68

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK   + Q+++    G ++  IS LE G+   +I     +A      +  + 
Sbjct: 3  NRLEEIRKARGIKQEDLALELGVSRQTISSLEKGRYNPSILLAFKIARRFGLQIEDVF 60


>gi|225155121|ref|ZP_03723616.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidase)-like protein [Opitutaceae bacterium
          TAV2]
 gi|224804068|gb|EEG22296.1| SOS-response transcriptional repressors (RecA-mediated
          autopeptidase)-like protein [Opitutaceae bacterium
          TAV2]
          Length = 215

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
          I     +  R+ A LTQ+E+  R G+ + WI +LE+    I+
Sbjct: 5  ISGKQLKEWRESAGLTQEELGQRLGYTREWIGKLESNDRPIS 46


>gi|224368109|ref|YP_002602272.1| HTH-type transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
 gi|223690825|gb|ACN14108.1| HTH-type transcriptional regulator [Desulfobacterium
          autotrophicum HRM2]
          Length = 211

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N+R++  L+ KE+ N TGF    + ++E GK    +  ++ L+  LD+ L +L+
Sbjct: 33 VGLRIKNLREKKGLSIKEVANLTGFDSQRLEDIENGKIQPQLGTVMKLSRALDSALGRLV 92


>gi|254168446|ref|ZP_04875290.1| CBS domain pair protein [Aciduliprofundum boonei T469]
 gi|197622501|gb|EDY35072.1| CBS domain pair protein [Aciduliprofundum boonei T469]
          Length = 184

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++ +  RK    TQKE+  R+G +QS I+++E G    +    + + + LD
Sbjct: 6  SSIKERRKRLGWTQKELAERSGVSQSAITKIEKGDMNPSYTLAVKIFNALD 56


>gi|167585519|ref|ZP_02377907.1| transcriptional regulator, XRE family protein [Burkholderia
          ubonensis Bu]
          Length = 227

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|148927479|ref|ZP_01810979.1| transcriptional regulator, XRE family [candidate division TM7
          genomosp. GTL1]
 gi|147887175|gb|EDK72643.1| transcriptional regulator, XRE family [candidate division TM7
          genomosp. GTL1]
          Length = 528

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 28/62 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +       +  R     TQ E+    G +QS I+ +E G   ++++ +  ++  L++ + 
Sbjct: 26 KQKIGKLIQQNRLGRGFTQAEMAKALGTSQSAINRIENGGQNLSMEMLARISDVLNSEIV 85

Query: 79 KL 80
           +
Sbjct: 86 SI 87


>gi|329963231|ref|ZP_08300968.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
 gi|328528927|gb|EGF55867.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT
          12057]
          Length = 93

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 24/44 (54%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          E  +TQ+ +  +    Q ++S++  G+  ++++ +  + + LD 
Sbjct: 41 ELGMTQRALAEKMNCTQQYVSKVLKGRENLSLETLCKIENALDI 84


>gi|298290250|ref|YP_003692189.1| XRE family transcriptional regulator [Starkeya novella DSM 506]
 gi|296926761|gb|ADH87570.1| transcriptional regulator, XRE family [Starkeya novella DSM 506]
          Length = 200

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           + D++  +  I     R  RK+ +L+ + +   +G ++S IS++E G++  +   +  L
Sbjct: 7  EIEDSVADQLRILAAELRRHRKDRQLSLEALSLLSGVSRSMISKIERGETVPSTGTLSRL 66

Query: 70 AHTLDTPLWKLL 81
          A  L T   +L+
Sbjct: 67 AEALGTTFSQLM 78


>gi|293400467|ref|ZP_06644612.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305493|gb|EFE46737.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 162

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          F N  + IR+   LTQ +        Q+ +S  E G    +++ MI ++      L  L
Sbjct: 10 FGNRIKEIRQSLGLTQVKFAKIINCTQATLSSYEKGSIIPSLETMIKISKECQISLDWL 68


>gi|271501754|ref|YP_003334780.1| XRE family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270345309|gb|ACZ78074.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586]
          Length = 82

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E  + +   R  R    +TQ+ +       QS+I+++E G+  +++   + LA  L    
Sbjct: 8  EYQLVIKTLREARIAKGITQEMLAQALERPQSFIAKVENGERRLDVVEFVQLARLLALDP 67

Query: 78 WKLL 81
           ++L
Sbjct: 68 AQVL 71


>gi|257484178|ref|ZP_05638219.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|298486948|ref|ZP_07005001.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
 gi|298158510|gb|EFH99577.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi
          pv. savastanoi NCPPB 3335]
 gi|320324095|gb|EFW80177.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327822|gb|EFW83829.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|320328658|gb|EFW84658.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330885478|gb|EGH19627.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
 gi|330891025|gb|EGH23686.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020]
 gi|330985445|gb|EGH83548.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
 gi|331008257|gb|EGH88314.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63


>gi|237797306|ref|ZP_04585767.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020156|gb|EGI00213.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63


>gi|300777210|ref|ZP_07087068.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
 gi|300502720|gb|EFK33860.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
          Length = 260

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          IF  N R +R + KL+Q+E+      ++   S+ E G+S    + +I ++   +  +  L
Sbjct: 3  IFSENIRYLRAQKKLSQQELAKEIFLSRVRYSKYEDGRSEAPYEVLIRISKYFNISIDLL 62

Query: 81 LK 82
          L 
Sbjct: 63 LT 64


>gi|225857563|ref|YP_002739074.1| transcriptional activator [Streptococcus pneumoniae P1031]
 gi|225725042|gb|ACO20894.1| transcriptional activator [Streptococcus pneumoniae P1031]
          Length = 299

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989]
 gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989]
          Length = 255

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R +  ++Q E+  +   ++  +S  E G++  N + + +L+   D  +  LL
Sbjct: 9  ELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLL 62


>gi|199599682|ref|ZP_03213053.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus HN001]
 gi|258507137|ref|YP_003169888.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG]
 gi|199589426|gb|EDY97561.1| Transcriptional regulator, xre family protein [Lactobacillus
           rhamnosus HN001]
 gi|257147064|emb|CAR86037.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG]
 gi|259648507|dbj|BAI40669.1| transcriptional regulator [Lactobacillus rhamnosus GG]
          Length = 291

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 27/69 (39%)

Query: 13  DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
                  + F    + IR    +TQ ++  +   ++  +S  E  ++  +++ +  +A  
Sbjct: 83  KPSEVIILNFSKQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARI 142

Query: 73  LDTPLWKLL 81
               L  L+
Sbjct: 143 FSVSLDTLI 151


>gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP14-BS69]
 gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae
          SP14-BS69]
          Length = 120

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+E KL+QKEI      ++  +S  E G+S I  + +  LA      +  LL
Sbjct: 2  NRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKVKQLADYFGVSVGYLL 59


>gi|109522125|ref|YP_655802.1| gp41 [Mycobacterium phage PMC]
 gi|91980825|gb|ABE67542.1| gp41 [Mycobacterium phage PMC]
          Length = 70

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R IR+    +  E+   +G +  ++S+LE G    N      LA  L  P+  L +P
Sbjct: 3  QELRVIRERTGWSSAELSRESGISAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 62


>gi|28870080|ref|NP_792699.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213966893|ref|ZP_03395043.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301381575|ref|ZP_07229993.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061669|ref|ZP_07253210.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40]
 gi|302134354|ref|ZP_07260344.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28853326|gb|AAO56394.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213928215|gb|EEB61760.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|331015365|gb|EGH95421.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
          M302278PT]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + +I ++  L   +   L     
Sbjct: 4  GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63


>gi|42520148|ref|NP_966063.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
 gi|42409885|gb|AAS13997.1| transcriptional regulator, putative [Wolbachia endosymbiont of
          Drosophila melanogaster]
          Length = 308

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +N R E   TQK++  + G     I + E G   I+I  +  +A  L   +  L+
Sbjct: 13 VGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRGISIKRLYAIAEALSVSITNLI 72



 Score = 44.2 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  R   + TQK++  +    +  +S  E G++ + +D +  +A  L   +  LL
Sbjct: 167 GKKIKEWRLVREYTQKDLGEKMSTTRHEVSNYEQGRTAVPLDKLYEMAEALSINITDLL 225


>gi|73662636|ref|YP_301417.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72495151|dbj|BAE18472.1| predicted transcriptional regulator [Staphylococcus saprophyticus
          subsp. saprophyticus ATCC 15305]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N +  RK+   + + +   T  +++ + ++E  +S  +I  +  +A+ L     +L
Sbjct: 7  IIAENLKLYRKQNGYSLEHLSYLTEVSKTMLGQIERKESIPSITTLWKIANGLKVSFTEL 66

Query: 81 LK 82
           +
Sbjct: 67 TQ 68


>gi|85708082|ref|ZP_01039148.1| hypothetical protein NAP1_02565 [Erythrobacter sp. NAP1]
 gi|85689616|gb|EAQ29619.1| hypothetical protein NAP1_02565 [Erythrobacter sp. NAP1]
          Length = 193

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R IRK   LT  ++            I  LETG   ++I  M  +   L+     L+
Sbjct: 3  NRIREIRKAKGLTLADLAEACEPPTTAQTIGRLETGMRNLSIKWMDRIGAALEVDPEVLV 62

Query: 82 K 82
          +
Sbjct: 63 R 63


>gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 371

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 34/64 (53%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +++         RKE  +TQ+++ +  G +++ +S+ E+G S  +I  +  LA   +  +
Sbjct: 2  KKLNIGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNISV 61

Query: 78 WKLL 81
           +LL
Sbjct: 62 DELL 65


>gi|119386544|ref|YP_917599.1| helix-turn-helix domain-containing protein [Paracoccus
          denitrificans PD1222]
 gi|119377139|gb|ABL71903.1| helix-turn-helix domain protein [Paracoccus denitrificans PD1222]
          Length = 81

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +A LTQ E+  R    QS++++ E G+  I +  +I +A  +      +++
Sbjct: 17 LKQARLDAGLTQTELAERLKRPQSFVAKYENGERRIEVVELIEIADAIGADPHDIIQ 73


>gi|254203747|ref|ZP_04910107.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH]
 gi|254360225|ref|ZP_04976495.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280]
 gi|147745259|gb|EDK52339.1| DNA-binding/cupin domain protein [Burkholderia mallei FMH]
 gi|148029465|gb|EDK87370.1| DNA-binding/cupin domain protein [Burkholderia mallei 2002721280]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +   
Sbjct: 31 LVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 90

Query: 81 LK 82
          L+
Sbjct: 91 LR 92


>gi|47567072|ref|ZP_00237789.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|206970262|ref|ZP_03231215.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|206978226|ref|ZP_03239106.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217962506|ref|YP_002341078.1| DNA-binding protein [Bacillus cereus AH187]
 gi|218234825|ref|YP_002369834.1| DNA-binding protein [Bacillus cereus B4264]
 gi|222098481|ref|YP_002532539.1| DNA-binding protein [Bacillus cereus Q1]
 gi|296505465|ref|YP_003667165.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
 gi|47556390|gb|EAL14724.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241]
 gi|206734839|gb|EDZ52008.1| DNA-binding protein [Bacillus cereus AH1134]
 gi|206743585|gb|EDZ55012.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|217065545|gb|ACJ79795.1| DNA-binding protein [Bacillus cereus AH187]
 gi|218162782|gb|ACK62774.1| DNA-binding protein [Bacillus cereus B4264]
 gi|221242540|gb|ACM15250.1| DNA-binding protein [Bacillus cereus Q1]
 gi|296326517|gb|ADH09445.1| PbsX family transcriptional regulator [Bacillus thuringiensis
          BMB171]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P+ ++  
Sbjct: 5  NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFT 63


>gi|16804367|ref|NP_465852.1| hypothetical protein lmo2328 [Listeria monocytogenes EGD-e]
 gi|47096027|ref|ZP_00233629.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes
          str. 1/2a F6854]
 gi|254938319|ref|ZP_05270016.1| transcriptional regulator [Listeria monocytogenes F6900]
 gi|16411817|emb|CAD00406.1| lmo2328 [Listeria monocytogenes EGD-e]
 gi|47015624|gb|EAL06555.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes
          str. 1/2a F6854]
 gi|258610931|gb|EEW23539.1| transcriptional regulator [Listeria monocytogenes F6900]
          Length = 80

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + IR+E  LTQ+++       ++  + +E G+   ++ N + +A  LD
Sbjct: 5  LKKIREENGLTQQDVAELADVERTTYASIEQGRRNPSVVNAMRIASVLD 53


>gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 63

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           RN RKE  L+Q E+  + G ++  ++ +E  K    +     LA  L T + +L 
Sbjct: 5  IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDPTLTLAFNLAKELKTTVDELF 60


>gi|294615154|ref|ZP_06695038.1| transcription regulator [Enterococcus faecium E1636]
 gi|312905108|ref|ZP_07764229.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|291591974|gb|EFF23599.1| transcription regulator [Enterococcus faecium E1636]
 gi|310631498|gb|EFQ14781.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|315579064|gb|EFU91255.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 71

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N    RKE  L+Q E+  +    Q  +S  +TG++      M +L+  L  P+ +L 
Sbjct: 5  SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELF 62


>gi|285018770|ref|YP_003376481.1| transcriptional regulator transcription regulator protein
          [Xanthomonas albilineans GPE PC73]
 gi|283473988|emb|CBA16489.1| putative transcriptional regulator transcription regulator
          protein [Xanthomonas albilineans]
          Length = 115

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            F +  R  RK A LTQ+++    G  +S IS  E  + T +   + +L   L   L  
Sbjct: 2  KSFGDRLREARKAAGLTQEQLGFSLGVTKSSISAWENDRETPSFRLLPMLRVVLKRSLDD 61

Query: 80 LL 81
          L+
Sbjct: 62 LV 63


>gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3]
 gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + KL+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDKLI 65


>gi|227357896|ref|ZP_03842243.1| hypothetical protein HMPREF0693_3134 [Proteus mirabilis ATCC
          29906]
 gi|227161901|gb|EEI46923.1| hypothetical protein HMPREF0693_3134 [Proteus mirabilis ATCC
          29906]
          Length = 102

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  RKE  ++   +  +   +Q  IS  E GK+ +  + +  +   L+   + L 
Sbjct: 13 GAYIRKTRKEMGMSALVLGEKLNMSQQQISRCENGKTNLTFEFINKVLVALNKQWYHLF 71


>gi|210631905|ref|ZP_03297117.1| hypothetical protein COLSTE_01007 [Collinsella stercoris DSM 13279]
 gi|210159830|gb|EEA90801.1| hypothetical protein COLSTE_01007 [Collinsella stercoris DSM 13279]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI---NIDNMIILAHTLDTP 76
            +  +  R  A L+Q ++   +G     I + E G+  +   + + ++ LA  +  P
Sbjct: 148 ASRLKKYRTSAGLSQSQLAALSGVPVRSIQQYEQGQKRVNRASFETVLRLAQAVGAP 204


>gi|297196740|ref|ZP_06914138.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197720104|gb|EDY64012.1| conserved hypothetical protein [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 104

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 31/56 (55%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             +R E   T  E+ +R+G A+  + +LE G++T ++     LAHT D P+ + L
Sbjct: 34 LARLRAERGWTFDELADRSGLARRTLIDLEHGRTTGSVTTWHTLAHTFDVPIERFL 89


>gi|148989990|ref|ZP_01821265.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP6-BS73]
 gi|194397378|ref|YP_002038572.1| transcriptional regulator PlcR [Streptococcus pneumoniae G54]
 gi|147924650|gb|EDK75736.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP6-BS73]
 gi|194357045|gb|ACF55493.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae G54]
          Length = 299

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M+     + IR E  +++ +   +        +S +E+G S  ++  +  +A  L  P++
Sbjct: 1  MLIGQKIKEIRIEKGVSRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60

Query: 79 KLL 81
           L+
Sbjct: 61 SLM 63


>gi|115375886|ref|ZP_01463135.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1]
 gi|310819833|ref|YP_003952191.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
 gi|115367064|gb|EAU66050.1| helix-turn-helix motif [Stigmatella aurantiaca DW4/3-1]
 gi|309392905|gb|ADO70364.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
          Length = 124

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          ++    R I  +  R  R  A LTQ ++ +    +    S LE G+   ++  +  L   
Sbjct: 15 ESSRPLRSIIGDALRAARLRANLTQVDVAHLIDISPVVYSRLERGRGLPSVQTLFCLCTA 74

Query: 73 LDTPLWKLL 81
          L     +LL
Sbjct: 75 LRATPNELL 83


>gi|110804036|ref|YP_699966.1| Helix-turn-helix domain protein [Clostridium phage phiSM101]
 gi|110684537|gb|ABG87904.1| Helix-turn-helix domain protein [Clostridium phage phiSM101]
          Length = 120

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N  + +RK   LTQ E  ++   ++S    +ETG+  +    +  +      
Sbjct: 3  NRVKELRKSLGLTQNEFADKINMSRSNFGSIETGRVNLTDRVINDICKAFSV 54


>gi|78067487|ref|YP_370256.1| XRE family transcriptional regulator [Burkholderia sp. 383]
 gi|77968232|gb|ABB09612.1| transcriptional regulator, XRE family [Burkholderia sp. 383]
          Length = 233

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 33 QVVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKIAAALKVSVAA 92

Query: 80 LLK 82
           L+
Sbjct: 93 FLR 95


>gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16]
 gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      +  R    L+Q+++  + G ++  +S+ E G +  + D ++ LA  L+  +  
Sbjct: 3  MTIGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISVDT 62

Query: 80 LL 81
          LL
Sbjct: 63 LL 64


>gi|332670075|ref|YP_004453083.1| helix-turn-helix domain-containing protein [Cellulomonas fimi
          ATCC 484]
 gi|332339113|gb|AEE45696.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484]
          Length = 113

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R+    T +E+ +    +  ++SE+E G+   + + +  +   LD P+ 
Sbjct: 5  RREIGDVLRDARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLNSICEALDVPMS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 LVLR 68


>gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17]
 gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010]
 gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif
          [Bifidobacterium bifidum S17]
 gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif
          [Bifidobacterium bifidum PRL2010]
          Length = 161

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  LTQ +  +     Q  +S  E G +  +ID + +++   + P+ +
Sbjct: 1  MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16]
 gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R+E  LTQKE+      +   +S+ E G +  ++  +  L+  L   + +LL
Sbjct: 20 QARREKGLTQKELAQALHVSPQAVSKWERGLNFPDLALLEALSDQLGLTVSELL 73


>gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1]
 gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|271967597|ref|YP_003341793.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270510772|gb|ACZ89050.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 407

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII-LAHTL 73
                    + R  RK A +TQ+E+  R G AQSW+S +E     ++   ++  LA  L
Sbjct: 4  SDPAGESAGTHVRRARKRAGITQRELAQRVGRAQSWVSGVENDSIPLDSIALVNGLARVL 63

Query: 74 DTPLWKL 80
               +L
Sbjct: 64 RIHPNEL 70


>gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp.
          avenae ATCC 19860]
 gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp.
          avenae ATCC 19860]
          Length = 469

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/58 (15%), Positives = 26/58 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++       R +R E  L+Q  +    G + S+++++E  +  + +  ++ +   L  
Sbjct: 2  KKTFMGVKLRKLRAERGLSQIALAQALGLSPSYLNQIEQNQRPLTVSVLLKIHRVLGV 59


>gi|253987700|ref|YP_003039056.1| bacteriophage n15 gp48 protein [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253779150|emb|CAQ82310.1| similar to gp48 proteins of bacteriophage n15 [Photorhabdus
          asymbiotica]
          Length = 92

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 7  DEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNM 66
          D     DA+  E  +  N    +R  A LTQ ++  R G  ++ IS LE G     +  +
Sbjct: 16 DVKAEYDALEPEFELI-NTLLRMRHAAGLTQNQVAQRMGTKEANISRLEKGNGNPTLKTL 74

Query: 67 IILAHTLDTPL 77
          +  A   +  L
Sbjct: 75 LNYAKACNCKL 85


>gi|238854983|ref|ZP_04645312.1| transcriptional regulator, xre family [Lactobacillus jensenii
          269-3]
 gi|238832354|gb|EEQ24662.1| transcriptional regulator, xre family [Lactobacillus jensenii
          269-3]
          Length = 107

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 34 KLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKLL 81
          KLTQ+++   +G + ++IS +E  G   I+I  +  +A +L+     L+
Sbjct: 2  KLTQEDLAEFSGLSVNFISRIERTGDQNISIKKIDAIAQSLNMDTPSLI 50


>gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL
          200]
 gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL
          200]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 373

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24]
 gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171]
 gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24]
 gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293]
 gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|217960732|ref|YP_002339296.1| DNA-binding protein [Bacillus cereus AH187]
 gi|229139935|ref|ZP_04268500.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26]
 gi|217067257|gb|ACJ81507.1| DNA-binding protein [Bacillus cereus AH187]
 gi|228643600|gb|EEK99866.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar
          konkukian str. 97-27]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|70729712|ref|YP_259451.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68344011|gb|AAY91617.1| DNA-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+  KL+Q+E+  R+G   + IS +E  + + ++ ++  L   +   L     
Sbjct: 4  GTRLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSVSSLKKLLEGIPMSLADFFT 63


>gi|71065545|ref|YP_264272.1| DNA binding protein [Psychrobacter arcticus 273-4]
 gi|71038530|gb|AAZ18838.1| possible DNA binding protein , Helix turn helix motif
          [Psychrobacter arcticus 273-4]
          Length = 115

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI------NIDNMIILAHTLDT 75
          F    R +R + ++  K + +  G +  ++S +ETG+  +      +I N + L+    T
Sbjct: 7  FGKKLRKLRIDHEVMLKTMADSIGVSSPYLSAIETGRKPVNAHLLNSIINSLQLSEQEGT 66

Query: 76 PLWKL 80
           L KL
Sbjct: 67 ELTKL 71


>gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987]
 gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|19746767|ref|NP_607903.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes
          MGAS8232]
 gi|139473168|ref|YP_001127883.1| DNA-binding membrane protein [Streptococcus pyogenes str.
          Manfredo]
 gi|19748999|gb|AAL98402.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes
          MGAS8232]
 gi|134271414|emb|CAM29634.1| putative DNA-binding membrane protein [Streptococcus pyogenes
          str. Manfredo]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|21911121|ref|NP_665389.1| hypothetical protein SpyM3_1585 [Streptococcus pyogenes MGAS315]
 gi|28895194|ref|NP_801544.1| hypothetical protein SPs0282 [Streptococcus pyogenes SSI-1]
 gi|21905331|gb|AAM80192.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28810439|dbj|BAC63377.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|322516931|ref|ZP_08069826.1| XRE family transcriptional regulator [Streptococcus vestibularis
          ATCC 49124]
 gi|322124508|gb|EFX95995.1| XRE family transcriptional regulator [Streptococcus vestibularis
          ATCC 49124]
          Length = 108

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R +R +  +TQ+ +  +     +++ ++E  +  I I  +  +   LD 
Sbjct: 10 KRIRVLRIKEGMTQEMLEEKAELGTNYVYKIENLEPNIKIKTLEKIMKALDV 61


>gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC
          700779]
 gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis
          ATCC 700641]
 gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC
          700779]
          Length = 148

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           E   F    + +RK  KLTQ +I    G  Q   S  E G     ++ ++ LA+   T 
Sbjct: 3  TEDYKFSERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLEPGLEFVVKLANIFGTT 62

Query: 77 LWKLL 81
             LL
Sbjct: 63 TDYLL 67


>gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R +R E  +TQK++ ++   +   +S+ E G    +I  +  L+  L+  +  LL
Sbjct: 6  VGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGMGLPDISLIPELSRILEIDIMHLL 65


>gi|237733582|ref|ZP_04564063.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383415|gb|EEO33506.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 407

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +V + +  R+   ++Q+++    G  + ++S++ETGK+  +      +   L+
Sbjct: 18 ETWVRDIKEKREVYGISQQKLALAAGITRPYLSDIETGKAHPSEALQETITEALE 72


>gi|228956760|ref|ZP_04118546.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          pakistani str. T13001]
 gi|228802948|gb|EEM49780.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar
          pakistani str. T13001]
          Length = 117

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      R  R+++  TQ  I  +    +  +S  E+G+   + D +  LA      +  
Sbjct: 1  MTLGERLRTCREKSGYTQTYITEKLEIHRGTLSSYESGRRKPDYDTLSKLADIYKVSVDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|149189972|ref|ZP_01868250.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1]
 gi|148836138|gb|EDL53097.1| hypothetical protein VSAK1_25545 [Vibrio shilonii AK1]
          Length = 155

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R +R +   +Q+++   +G +   I  +E G+    ++++  LA   +T + +L
Sbjct: 3  IRKLRLQRGWSQEQLAELSGLSIRTIQRIERGQK-PGLESLKSLAAVFETTITEL 56


>gi|134101749|ref|YP_001107410.1| XRE family transcriptional regulator [Saccharopolyspora erythraea
          NRRL 2338]
 gi|133914372|emb|CAM04485.1| transcriptional regulator, XRE family [Saccharopolyspora
          erythraea NRRL 2338]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  + +R  A LT  ++ +R G+ Q  +S++E+ K  + ID +I LA        
Sbjct: 7  RRVLASELKRLRLSAGLTHVDVAHRLGWQQGKVSKIESAKQGVGIDAVIALAEVCGATPQ 66

Query: 79 K 79
          +
Sbjct: 67 Q 67


>gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1]
 gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1]
          Length = 215

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +++R++  +TQ+E+ +  G A+   +  E  +   +   +  LA      +  L
Sbjct: 1  MLGERLKSLREQKGITQQEMADILGIARGTYAHYEIDRREPDNATLSRLADFFGVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|152997330|ref|YP_001342165.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838254|gb|ABR72230.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1]
          Length = 132

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           + +R + K+TQ++I      A S +S +E G    +   +  LA  L+T    L
Sbjct: 7  IKILRIQRKMTQEQIALEADMATSNVSRIEKGLRQPSQKVLQKLAKALNTKPSVL 61


>gi|145593947|ref|YP_001158244.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145303284|gb|ABP53866.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 150

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R+    T +E+ +    +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRLIGDALRTRRQGQHRTLREVSSAANVSLGYLSEIERGQKEPSSELLAAICDALGARLS 64

Query: 79 KLLK 82
          +LL+
Sbjct: 65 ELLR 68


>gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 111

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M        +RK A LTQ ++      +Q  +   E G+  I I  +  +A  L   L +
Sbjct: 2  MTLGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRRRIQISVLPEIAKLLSVSLEE 61

Query: 80 LL 81
          L 
Sbjct: 62 LF 63


>gi|94313682|ref|YP_586891.1| putative transcriptional regulator [Cupriavidus metallidurans
          CH34]
 gi|93357534|gb|ABF11622.1| putative transcriptional regulator [Cupriavidus metallidurans
          CH34]
          Length = 296

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R +   +Q  +    G +Q  IS LE+G++  + + ++ LA  L  PL +
Sbjct: 18 LRYWRGKRGYSQLALSLAAGVSQRHISFLESGRARPSREMVLALAERLGVPLRQ 71


>gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308376634|ref|ZP_07439483.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308378845|ref|ZP_07484047.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
 gi|308331404|gb|EFP20255.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003]
 gi|308342691|gb|EFP31542.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308346576|gb|EFP35427.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 gi|308350499|gb|EFP39350.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008]
 gi|308359101|gb|EFP47952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010]
          Length = 478

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R       R +R+E  LTQ  +      + S++++LE  +  I +  +++L    D  
Sbjct: 7  RTFSGARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLS 64


>gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
 gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261]
          Length = 228

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +  RKE KLTQKEI  + G +    S  E G    + + +  L + L  P
Sbjct: 5  EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVP 57


>gi|291615469|ref|YP_003522577.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
 gi|291582531|gb|ADE16987.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4]
          Length = 74

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
             N + +R  A LTQ ++       QS +S++E  ++  + +  +  +A  LD  +  L
Sbjct: 3  VGENIKMLRIAAGLTQVQLAKEARIDQSGLSKIEREENENVTLPTLRRIARALDCSVVDL 62

Query: 81 LK 82
          L+
Sbjct: 63 LE 64


>gi|260461769|ref|ZP_05810015.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
 gi|259032410|gb|EEW33675.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum
           WSM2075]
          Length = 138

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 21  IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F    R  R + +LT +E+  R G ++S +  +E G   + I  M   A  +   L+ 
Sbjct: 45  LFGKTIRLGRMQHRLTGQELAERIGVSRSTLQRIEKGDPKVEIGLMFEAAAIVGVKLFD 103


>gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM
          43017]
 gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis
          DSM 43017]
          Length = 475

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 6/53 (11%), Positives = 23/53 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R++R+   ++Q E+      + S+++++E     + +  ++ +      
Sbjct: 7  GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGV 59


>gi|256393169|ref|YP_003114733.1| XRE family transcriptional regulator [Catenulispora acidiphila
          DSM 44928]
 gi|256359395|gb|ACU72892.1| transcriptional regulator, XRE family [Catenulispora acidiphila
          DSM 44928]
          Length = 483

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI-NIDNMIILAH 71
               +     +  +  R    L+Q E+ +     QS++S LE GK  + +I  +   A 
Sbjct: 17 RTAPPDSSDLGDVLKAYRTRHDLSQAELGDLLNCDQSYLSMLERGKRFVRDIGELRRFAA 76

Query: 72 TLDTPLWKL 80
           L  P  +L
Sbjct: 77 VLGLPEAEL 85


>gi|289579258|ref|YP_003477885.1| XRE family transcriptional regulator [Thermoanaerobacter italicus
          Ab9]
 gi|289528971|gb|ADD03323.1| transcriptional regulator, XRE family [Thermoanaerobacter
          italicus Ab9]
          Length = 117

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 + +R++   TQ E+   TG  +  +S  E G+  I+I  +  LA    
Sbjct: 5  KAIGEKLKEVREKNGYTQAEVEKATGIKREMLSYYENGRREIDIATLEKLASFYG 59


>gi|254197120|ref|ZP_04903543.1| irep [Burkholderia pseudomallei S13]
 gi|169653862|gb|EDS86555.1| irep [Burkholderia pseudomallei S13]
          Length = 106

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
          IF    +  RK A L+Q+++    G     A + +++ E GK   +   +  +A  L  P
Sbjct: 3  IFAVRLKQARKAAGLSQEKLGVLAGVDEMSASARMNQYERGKHEPDFAMVNRIAQALQLP 62

Query: 77 L 77
          +
Sbjct: 63 I 63


>gi|164687004|ref|ZP_02211032.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM
          16795]
 gi|164603889|gb|EDQ97354.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM
          16795]
          Length = 71

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R + K+ Q E+ N  G ++  IS++E G  + ++   + +A  L+  + ++ 
Sbjct: 5  NRLKEYRAKIKVNQTEMGNLVGVSRQTISQIERGDYSPSVTLALKIAKVLNVSVEEIF 62


>gi|160931653|ref|ZP_02079047.1| hypothetical protein CLOLEP_00484 [Clostridium leptum DSM 753]
 gi|156869298|gb|EDO62670.1| hypothetical protein CLOLEP_00484 [Clostridium leptum DSM 753]
          Length = 90

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          KE +L+Q+      G A+S ++ +E G    N + +  +A+ L     +L++
Sbjct: 18 KEKQLSQEIASGLAGLARSHLAMIENGSKQANFETVWKIANALGMCPHELVR 69


>gi|77462199|ref|YP_351703.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1]
 gi|77386617|gb|ABA77802.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1]
          Length = 120

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + +R+    TQ+ +  R+G ++S ++ +E      N   +  +A  L      L +
Sbjct: 25 ALRIKQLREARGWTQEVLAARSGMSRSQLAMIERETRPANTIRLNAIAGALGVSTEDLFE 84


>gi|77163558|ref|YP_342084.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC
          19707]
 gi|254436424|ref|ZP_05049929.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27]
 gi|76881872|gb|ABA56554.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC
          19707]
 gi|207087958|gb|EDZ65232.1| hypothetical protein NOC27_3396 [Nitrosococcus oceani AFC27]
          Length = 76

 Score = 45.0 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLWKL 80
             N + +R  A LTQ ++       QS +S++E  ++ ++ +  +  +A  LD  +  L
Sbjct: 3  VGKNIKGLRIAAGLTQTQLAKEARIDQSGLSKIEREENESVTLPTLRKIAKALDCSVAAL 62

Query: 81 LK 82
          L+
Sbjct: 63 LE 64


>gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK405]
 gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK678]
 gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1]
 gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1058]
 gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1056]
          Length = 94

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + IR++   +Q +I    G  +  IS  E  K+ ++  ++I LA      L +L
Sbjct: 1  MLGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60


>gi|315607572|ref|ZP_07882567.1| XRE family transcriptional regulator [Prevotella buccae ATCC 33574]
 gi|315250755|gb|EFU30749.1| XRE family transcriptional regulator [Prevotella buccae ATCC 33574]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%)

Query: 8   EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           E +       E++      +   K   +TQK++    G + S IS+   GKS   +    
Sbjct: 44  EEYEKKHHPIEKLTLAEVIKQGLKAKGMTQKDLSQAVGLSTSRISDFTQGKSEPTLATAG 103

Query: 68  ILAHTLDTPLWKLL 81
            +   LD     +L
Sbjct: 104 EICRVLDIMPEAML 117


>gi|313837173|gb|EFS74887.1| helix-turn-helix protein [Propionibacterium acnes HL037PA2]
 gi|314927806|gb|EFS91637.1| helix-turn-helix protein [Propionibacterium acnes HL044PA1]
 gi|314971945|gb|EFT16043.1| helix-turn-helix protein [Propionibacterium acnes HL037PA3]
 gi|328907270|gb|EGG27036.1| transcriptional regulator [Propionibacterium sp. P08]
          Length = 91

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   + R  R     T +E+ +    +  ++SE+E G+   + + ++ +   LD P  
Sbjct: 7  REVLGESLREQRFGQGRTLREVSSAARVSLGYLSEVERGQKEASSELILAICTALDLPQS 66

Query: 79 KLLK 82
          +L++
Sbjct: 67 ELMR 70


>gi|308176134|ref|YP_003915540.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
 gi|307743597|emb|CBT74569.1| putative transcriptional regulator [Arthrobacter arilaitensis
          Re117]
          Length = 487

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +RK  +LT  ++      A S +S +E GK    +  +  LA  L   +  LL
Sbjct: 20 LGRRIRFLRKSKQLTLDDVSTLVDTAPSQLSLIENGKREPKLSLLKSLAGALGVGVDDLL 79


>gi|269124932|ref|YP_003298302.1| XRE family transcriptional regulator [Thermomonospora curvata DSM
          43183]
 gi|268309890|gb|ACY96264.1| transcriptional regulator, XRE family [Thermomonospora curvata
          DSM 43183]
          Length = 383

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKLL 81
            N    R    ++Q  +    G ++SW+S++E G   ++ +  ++ LA  L+  +  L+
Sbjct: 9  GENIVRRRMRLGMSQSVLAGLIGRSESWVSQVERGVHKVDRLSVLVTLARALNVEVADLV 68


>gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM
          44928]
 gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM
          44928]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTG--FAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
               R  R     +Q E+  R       + IS  E+G+ ++ +D++I LA  L   + +
Sbjct: 8  VGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESGRRSVGLDDLIELARVLGLGISE 67

Query: 80 LL 81
          LL
Sbjct: 68 LL 69


>gi|220928578|ref|YP_002505487.1| XRE family transcriptional regulator [Clostridium cellulolyticum
          H10]
 gi|219998906|gb|ACL75507.1| plasmid maintenance system antidote protein, XRE family
          [Clostridium cellulolyticum H10]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                +R +  +T K++    G ++ ++ ++E+GK  ++ D +  ++  LD  L
Sbjct: 5  GQEINKLRLKKGMTPKQLARALGVSEKFVLDIESGKKIVSDDMIGRVSKALDFEL 59


>gi|257060127|ref|YP_003138015.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802]
 gi|256590293|gb|ACV01180.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802]
          Length = 534

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +  +     R+   ++Q+ +  + G +QSWI +LE G+ +   ++  IL   L 
Sbjct: 477 ELTSDQILAARQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKPEDRAILQTVLG 531


>gi|254426264|ref|ZP_05039980.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
 gi|196187678|gb|EDX82644.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
          Length = 462

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%)

Query: 6   RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
           R         L    +     + +RK    +Q+++   TG +Q  IS +E G  ++   N
Sbjct: 392 RAADKSDSVQLSITRLTGTEIKTMRKAKGWSQRKLARITGISQGLISMMENGDRSVTDAN 451

Query: 66  MIILAHTLD 74
             +L  TL+
Sbjct: 452 EALLKQTLE 460


>gi|218247058|ref|YP_002372429.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801]
 gi|218167536|gb|ACK66273.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801]
          Length = 534

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 20  MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +  +     R+   ++Q+ +  + G +QSWI +LE G+ +   ++  IL   L 
Sbjct: 477 ELTSDQILAARQRQGMSQRALAEKLGKSQSWIRDLERGRFSAKPEDRAILQTVLG 531


>gi|189423245|ref|YP_001950422.1| XRE family transcriptional regulator [Geobacter lovleyi SZ]
 gi|189419504|gb|ACD93902.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ]
          Length = 86

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              R  RK+  +T ++       + +++S LE GK T+ +D ++ +A  L   
Sbjct: 10 GRLIRQKRKDDGITLEDAAALCSVSYAFLSALENGKETVRLDKVLQVALCLGIE 63


>gi|86739017|ref|YP_479417.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86565879|gb|ABD09688.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 167

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 23  VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKLL 81
            +    IR+   L+Q+E+  R+G + + I +LE  +     I+ +  LA  L+    +L 
Sbjct: 91  GDRIAQIRRRRSLSQEELAARSGVSVAVIRKLEQNRRAGARIETLHALARGLNVKTSELF 150


>gi|70725248|ref|YP_252162.1| hypothetical protein SH0247 [Staphylococcus haemolyticus
          JCSC1435]
 gi|68445972|dbj|BAE03556.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 112

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RKE  LTQ ++       +  +S+ E G    N+  ++ LA   D    +LL
Sbjct: 3  LAEQIRKHRKENNLTQDQLATELHTTRQTVSKWEQGTIEPNVQMIVQLAQRFDISTDELL 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|25011369|ref|NP_735764.1| hypothetical protein gbs1327 [Streptococcus agalactiae NEM316]
 gi|24412907|emb|CAD46986.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++   TQ+ +     F+ +  +++E G+  +  D +I L+   +     +L
Sbjct: 3  QRIRDLREDHDFTQRYVAEVLSFSHTNYAKIERGEVVLTADVLIKLSKLYNVSTDYIL 60


>gi|303326179|ref|ZP_07356622.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864095|gb|EFL87026.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  +    +  R+ R+E ++  + +   T  +  ++++LE G+   +I  M  LA  L  
Sbjct: 1  MPTKHNIGSRIRSFREEREIDLETLSQDTNLSVEFLNQLENGEIYPSIGPMQKLARALGV 60

Query: 76 PL 77
           L
Sbjct: 61 RL 62


>gi|300933807|ref|ZP_07149063.1| hypothetical protein CresD4_07014 [Corynebacterium resistens DSM
          45100]
          Length = 73

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R  R++A LTQ ++    G ++  I+ +E G  + ++   + +   L+  + ++ 
Sbjct: 5  NSLRTARRDAPLTQLQLAEAVGVSRQTIANIERGDYSPSVHLALNICRCLNKTVEEVF 62


>gi|297156282|gb|ADI05994.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1]
          Length = 288

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          P      +R R +   N R +R+E  L  +    +     S IS +E+G+S +   ++  
Sbjct: 2  PVDPKPTVR-RRVLGTNLRRLREEHGLLLEHAAEQLSCYPSKISRIESGQSPVRPLDLKA 60

Query: 69 LAHTLDT 75
          L      
Sbjct: 61 LLDLYGV 67


>gi|282860747|ref|ZP_06269813.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282564483|gb|EFB70019.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          +    R++R+    TQ ++  R G++   IS +ETG+    +
Sbjct: 16 YGARLRSLREARGWTQDDLAARIGYSSVHISAVETGRKPPTL 57


>gi|323527291|ref|YP_004229444.1| helix-turn-helix domain-containing protein [Burkholderia sp.
          CCGE1001]
 gi|323384293|gb|ADX56384.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001]
          Length = 228

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +  
Sbjct: 29 HLVGVNLARLRAERQLSLDALARASGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAA 88

Query: 80 LLK 82
           L+
Sbjct: 89 FLR 91


>gi|261821438|ref|YP_003259544.1| phage repressor [Pectobacterium wasabiae WPP163]
 gi|261605451|gb|ACX87937.1| putative phage repressor [Pectobacterium wasabiae WPP163]
          Length = 244

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PL 77
          +       + +R    L+QK + +  G +Q+ I ++E GK++     ++ L++ L   P 
Sbjct: 2  KTTLAERLKTVRTSQGLSQKALGDMVGVSQAAIQKIEGGKASQTT-KIVELSNALHIRPE 60

Query: 78 W 78
          W
Sbjct: 61 W 61


>gi|228920080|ref|ZP_04083429.1| Helix-turn-helix repressor protein [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228839536|gb|EEM84828.1| Helix-turn-helix repressor protein [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 69

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK+  L+Q+++  + G ++  I  +E GK   ++     +A T  T +  + 
Sbjct: 3  NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60


>gi|227484868|ref|ZP_03915184.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
 gi|227237228|gb|EEI87243.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
          51172]
          Length = 145

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
          L  R    N  + +R   KL+  +     G ++S IS++E G++ ++ + MI L
Sbjct: 24 LIRRYKMSNRLKQLRTTLKLSGAKFAEPLGVSRSAISDIERGRNNLS-EQMIKL 76


>gi|213970979|ref|ZP_03399100.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301382278|ref|ZP_07230696.1| hypothetical protein PsyrptM_06578 [Pseudomonas syringae pv.
          tomato Max13]
 gi|302059768|ref|ZP_07251309.1| hypothetical protein PsyrptK_07240 [Pseudomonas syringae pv.
          tomato K40]
 gi|213924215|gb|EEB57789.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 151

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R  +    + +R    L+Q +++++    Q+ IS LE   +T  ID    LAH L     
Sbjct: 4  RKAYAATLQWLRIRNGLSQADLQHQAD--QAHISRLEAATTTPTIDLSADLAHALGLTPL 61

Query: 79 KLLK 82
           LL 
Sbjct: 62 SLLT 65


>gi|194397893|ref|YP_002038537.1| transcriptional activator [Streptococcus pneumoniae G54]
 gi|194357560|gb|ACF56008.1| transcriptional activator, putative [Streptococcus pneumoniae
          G54]
          Length = 287

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|254380659|ref|ZP_04996025.1| DNA-binding protein [Streptomyces sp. Mg1]
 gi|194339570|gb|EDX20536.1| DNA-binding protein [Streptomyces sp. Mg1]
          Length = 296

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          S  +   R          R+E  LT++++  R G   ++++ LE   +   I ++  +A 
Sbjct: 12 STEVPAGRTDLGRRIAARRQELGLTREQVGKRCGADATYVAYLEEHAAAPAIGSLARIAD 71

Query: 72 TLDTPLWKL 80
           L T + +L
Sbjct: 72 ALGTTVAEL 80


>gi|156973431|ref|YP_001444338.1| hypothetical protein VIBHAR_01120 [Vibrio harveyi ATCC BAA-1116]
 gi|156525025|gb|ABU70111.1| hypothetical protein VIBHAR_01120 [Vibrio harveyi ATCC BAA-1116]
          Length = 84

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          R       +  R   +LTQ ++   T   ++ ISE+E G+ T + D    L   + 
Sbjct: 4  RSEIGLKVKQARNHMRLTQVQLSRLTKINKTTISEIENGRFTGSFDIFERLLDAVG 59


>gi|145593610|ref|YP_001157907.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145302947|gb|ABP53529.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 135

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + R  R+ A  +   +   T F++ ++S +ETG+     D +    H L  P+
Sbjct: 19 LGAHLRAAREAAGHSLAGMAALTHFSKPYLSLVETGRRQATPDIVGRYEHALGVPI 74


>gi|330468378|ref|YP_004406121.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328811349|gb|AEB45521.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 441

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R   +++Q+E+        S+IS LE G     +D ++ L   LD  L +LL
Sbjct: 21 FGQRLKARRTALRMSQRELAGDF-VTPSYISLLEAGSRVPTLDVVVYLGRMLDCSLEELL 79


>gi|317484462|ref|ZP_07943374.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316924286|gb|EFV45460.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 78

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  RK   L+Q  +  ++G +   I  LE G     +  +  +AH LD  +  L+
Sbjct: 7  FGDMLKEKRKLRGLSQMGLAMKSGRSLRCIQYLEAGTQEPTLSTLYAIAHALDLRVMDLI 66

Query: 82 K 82
          +
Sbjct: 67 E 67


>gi|313207294|ref|YP_004046471.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM
          15868]
 gi|312446610|gb|ADQ82965.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM
          15868]
 gi|315023411|gb|EFT36420.1| XRE family transcriptional regulator [Riemerella anatipestifer
          RA-YM]
 gi|325335232|gb|ADZ11506.1| transcriptional regulator, XRE family [Riemerella anatipestifer
          RA-GD]
          Length = 108

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 29/57 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     +  R+E  LTQ+++    G  +S IS+LE+  ++  ID +I +   L   +
Sbjct: 38 VLGKMIKTARQERNLTQEQLGQIVGVQKSQISKLESSANSATIDTIIKVFKALKAEI 94


>gi|295699461|ref|YP_003607354.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438674|gb|ADG17843.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 24/50 (48%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +  R+    +  E+  R+G +++ IS++E G+++     +  L+    
Sbjct: 16 RVKTEREARNWSLAELAERSGVSKAMISKIERGEASPTATVLGRLSGAFG 65


>gi|284036657|ref|YP_003386587.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283815950|gb|ADB37788.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74]
          Length = 402

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  +N R +RK   LTQ++   +    +S +   E G++  N  N+  +A   +T +  L
Sbjct: 3  LVSDNIRYLRKLNGLTQEQFSRKINIKRSLLGAYEEGRANPNGQNIQAIAKAFNTTVELL 62

Query: 81 LK 82
           +
Sbjct: 63 TR 64


>gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM
          15897]
 gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM
          15897]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +  F  N + +R++  + QKE+    G +   +S  E  ++   +  +  LA        
Sbjct: 2  KTKFGTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTEPKMGIVQQLADYFGVSTD 61

Query: 79 KLLK 82
           L+K
Sbjct: 62 YLIK 65


>gi|254384566|ref|ZP_04999906.1| helix-turn-helix domain containing protein [Streptomyces sp. Mg1]
 gi|194343451|gb|EDX24417.1| helix-turn-helix domain containing protein [Streptomyces sp. Mg1]
          Length = 425

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             E        R  R     +Q ++    G+ QS IS LE G+ T +I  +  +A  L 
Sbjct: 4  TQGEAHRIGELLRQARVLRGRSQADVAADLGYHQSKISRLEGGRGTEDIRVLREVARVLR 63

Query: 75 TPLWKL 80
           P   L
Sbjct: 64 IPPAHL 69


>gi|153939215|ref|YP_001392453.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|152935111|gb|ABS40609.1| DNA-binding protein [Clostridium botulinum F str. Langeland]
 gi|295320439|gb|ADG00817.1| DNA-binding protein [Clostridium botulinum F str. 230613]
          Length = 78

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGK---STINIDNMIILAHTLDT 75
           +  R+   + Q+++ +R G  Q ++S+LE        +N+D +  LA  L+ 
Sbjct: 2  IKIFREHKGIRQEDLASRLGITQPYLSKLENNSIYGINVNVDLIESLAMELNI 54


>gi|154496157|ref|ZP_02034853.1| hypothetical protein BACCAP_00441 [Bacteroides capillosus ATCC
          29799]
 gi|150274712|gb|EDN01776.1| hypothetical protein BACCAP_00441 [Bacteroides capillosus ATCC
          29799]
          Length = 240

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  +   +R+E   +Q+ +    G +Q+ +S  E G     +  +I      +     LL
Sbjct: 12 FSRSLSLLRQEKGASQRAVAKDLGISQALLSHYENGIREPGLAFVIKACDYYNVSADFLL 71


>gi|281358257|ref|ZP_06244740.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
 gi|281315347|gb|EFA99377.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC
          BAA-548]
          Length = 76

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S   L+         R  RK   L+Q E+         +IS+LE GK TI I  ++ + 
Sbjct: 1  MSKEKLQSAEAIGALIRTTRKTQGLSQAELAGVANTGVRFISDLENGKGTIQIRKLLNVL 60

Query: 71 HTLDTPLW 78
          + L   L+
Sbjct: 61 NALGLGLY 68


>gi|78189349|ref|YP_379687.1| XRE family transcriptional regulator [Chlorobium chlorochromatii
          CaD3]
 gi|78171548|gb|ABB28644.1| transcriptional regulator, XRE family [Chlorobium chlorochromatii
          CaD3]
          Length = 101

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 25/44 (56%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           +  RK+  LTQ+++  + G  +++IS +E   S I +  ++ +
Sbjct: 43 IQEARKKQHLTQEQLAEKVGTTKNYISRIENNASDIRLSTLMRI 86


>gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 468

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 24/58 (41%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           +       R +R E  L+Q  +  +   + S+++++E     + +  ++ ++     
Sbjct: 2  AKTYVGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGV 59


>gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus
          cereus G9241]
 gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus
          cereus G9241]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|332312705|gb|EGJ25800.1| hypothetical protein LMOSA_2410 [Listeria monocytogenes str.
          Scott A]
          Length = 433

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 29/51 (56%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             + +RK  +LTQ++   +  +++S++S +ETGK TI   ++  +  T  
Sbjct: 4  QEIKILRKRLQLTQQQFAEKLDWSKSYLSMIETGKRTIPKKSIEKIRKTFH 54


>gi|325568711|ref|ZP_08145004.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
 gi|325157749|gb|EGC69905.1| XRE family transcriptional regulator [Enterococcus casseliflavus
          ATCC 12755]
          Length = 263

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R +  LTQ+++       +  IS+ E GKS  ++D ++ L++  +  L  LLK
Sbjct: 4  GKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSNYFELTLDYLLK 63


>gi|299141641|ref|ZP_07034777.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella
           oris C735]
 gi|298576977|gb|EFI48847.1| toxin-antitoxin system, antitoxin component, Xre family [Prevotella
           oris C735]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%)

Query: 8   EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           E +       E++      +   K   +TQK++    G + S IS+   GKS   +    
Sbjct: 44  EEYEKKHHPIEKLTLAEVIKQGLKAKGMTQKDLSQAVGLSTSRISDFTQGKSEPTLATAG 103

Query: 68  ILAHTLDTPLWKLL 81
            +   LD     +L
Sbjct: 104 EICRVLDIMPEAML 117


>gi|291525625|emb|CBK91212.1| Predicted transcriptional regulators [Eubacterium rectale DSM
          17629]
          Length = 66

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN R IR++  + Q ++    G++   +  +E G ST + + M+ ++   +  +  
Sbjct: 1  MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISMYFNMLVED 60

Query: 80 LL 81
          + 
Sbjct: 61 VF 62


>gi|257868763|ref|ZP_05648416.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257802927|gb|EEV31749.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 282

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            F   RK A ++QKE+    G   Q+ +S  E      ++  +I L + ++ PL  L 
Sbjct: 4  EKFIAARKAAGMSQKELSE--GICTQATLSRFENNGQVPSLKILIKLCNRINLPLVDLF 60


>gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1]
 gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102]
 gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1]
          Length = 66

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          R E   TQ+E+  R G ++  I+ LE  K   ++     +A+  +  +  + 
Sbjct: 10 RAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVF 61


>gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W]
 gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W]
 gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|160895159|ref|ZP_02075932.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50]
 gi|156863193|gb|EDO56624.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50]
          Length = 273

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R +  ++Q E+  +    +  +S  E G++  N D + +L+   D  +  LL
Sbjct: 27 ELRTKRGMSQDELAEKIMVTRQAVSRWENGETIPNTDTLKLLSKEFDVSINTLL 80


>gi|114799525|ref|YP_758842.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
 gi|114739699|gb|ABI77824.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444]
          Length = 145

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
              +R +   N    R++ KLTQ+++    G     + + E G + ++   +  +A  L
Sbjct: 7  PSDIDR-VVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYEIAGVL 65

Query: 74 DTP 76
          + P
Sbjct: 66 EVP 68


>gi|94995013|ref|YP_603111.1| transcriptional regulator [Streptococcus pyogenes MGAS10750]
 gi|94548521|gb|ABF38567.1| Transcriptional regulator [Streptococcus pyogenes MGAS10750]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+  +I ++++L+      L +L+K
Sbjct: 4  GQQMIRYRKQQTLSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQLIK 63


>gi|118785|sp|P15017|DNU4_RHORU RecName: Full=Uncharacterized transcriptional regulator in ATPase
          CF(0) region; AltName: Full=URF4
 gi|46375|emb|CAA31250.1| ORF 4 (AA 1 - 108); homolog. to DNA-binding proteins
          [Rhodospirillum rubrum]
 gi|152603|gb|AAA26459.1| pot. DNA-binding protein (URF4); putative [Rhodospirillum rubrum]
          Length = 108

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R  R    L Q+ +  R G +   I + E G++ I+   +  +A  L  P+
Sbjct: 16 VGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDIAKALAVPI 71


>gi|28378921|ref|NP_785813.1| hypothetical protein lp_2342 [Lactobacillus plantarum WCFS1]
 gi|254557126|ref|YP_003063543.1| hypothetical protein JDM1_1959 [Lactobacillus plantarum JDM1]
 gi|300769678|ref|ZP_07079561.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|308181129|ref|YP_003925257.1| hypothetical protein LPST_C1947 [Lactobacillus plantarum subsp.
          plantarum ST-III]
 gi|28271758|emb|CAD64664.1| unknown [Lactobacillus plantarum WCFS1]
 gi|254046053|gb|ACT62846.1| conserved hypothetical protein [Lactobacillus plantarum JDM1]
 gi|300492721|gb|EFK27906.1| conserved hypothetical protein [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|308046620|gb|ADN99163.1| hypothetical protein LPST_C1947 [Lactobacillus plantarum subsp.
          plantarum ST-III]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          I     R  RK   ++QKE+ +  G   Q+ IS +E      ++  M+ + + L   L +
Sbjct: 3  ILGEKVRQFRKRKGMSQKELAD--GICTQATISLIEKKSKIPSMKIMMKICNRLGIRLSE 60

Query: 80 LL 81
          ++
Sbjct: 61 VI 62


>gi|329116698|ref|ZP_08245415.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326907103|gb|EGE54017.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 78

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
               +      ++  N+ ++ R+E  L+Q+++ +  G +++ I  +E           +
Sbjct: 2  SKQDKNYSEETDLVLKNHLKDTRRELGLSQQQLADMIGVSRNTIGSIERCVFVPTAKLAL 61

Query: 68 ILAHTLDTPLWKLL 81
          IL   LD    +L 
Sbjct: 62 ILCIALDKKFEELF 75


>gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
 gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium
          D16]
          Length = 149

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   ++  + RK++ L+Q+ +  + G ++  IS+ ET ++  +I     LA      L +
Sbjct: 1  MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDE 60

Query: 80 LLK 82
          L++
Sbjct: 61 LIE 63


>gi|307710039|ref|ZP_07646484.1| helix-turn-helix family protein [Streptococcus mitis SK564]
 gi|307619224|gb|EFN98355.1| helix-turn-helix family protein [Streptococcus mitis SK564]
          Length = 58

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            F+++  E  +TQK +  + G + + I  ++T +  I+  NM  +A  L+  + +L
Sbjct: 3  KKFKHLLIEKGMTQKALAEKAGISPNTIRNIKTER--ISFKNMCKIADALEVSIDEL 57


>gi|307067205|ref|YP_003876171.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|306408742|gb|ADM84169.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
          Length = 65

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 6  EARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTL 55


>gi|291548332|emb|CBL21440.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 242

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 29/59 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
               R  RK  K+T +++ +    +++ I + E G  +++I+ +  ++  L   + +L
Sbjct: 8  VGEQIRKYRKAGKMTLQDLADAIHKSRATICKYENGDISVDIETLYEISQILQVSMSQL 66


>gi|228989568|ref|ZP_04149552.1| hypothetical protein bpmyx0001_3400 [Bacillus pseudomycoides DSM
          12442]
 gi|228770105|gb|EEM18685.1| hypothetical protein bpmyx0001_3400 [Bacillus pseudomycoides DSM
          12442]
          Length = 83

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
             R    N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T
Sbjct: 14 QARRKDVKNQIYALRTENHISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGT 73

Query: 76 PLWKLL 81
           + KL 
Sbjct: 74 TVDKLF 79


>gi|257388783|ref|YP_003178556.1| XRE family transcriptional regulator [Halomicrobium mukohataei
          DSM 12286]
 gi|257171090|gb|ACV48849.1| transcriptional regulator, XRE family [Halomicrobium mukohataei
          DSM 12286]
          Length = 180

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           R  R E  LTQ ++ +R   +Q  I+ +E G     +  +  + + L+
Sbjct: 9  LRERRTELGLTQSKLADRADVSQPLIARIEGGDVDPRLSTLRRIVNALE 57


>gi|254520154|ref|ZP_05132210.1| tetratricopeptide repeat/DNA binding domain-containing protein
          [Clostridium sp. 7_2_43FAA]
 gi|226913903|gb|EEH99104.1| tetratricopeptide repeat/DNA binding domain-containing protein
          [Clostridium sp. 7_2_43FAA]
          Length = 434

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E +      +  RKE  +T K++          IS +E+G+S  ++D +  LA  L T +
Sbjct: 3  EILALGEKIKRKRKELDMTLKDLAGD-RITPGQISLVESGRSNPSMDLLEYLAGALQTSV 61

Query: 78 WKLLK 82
            L++
Sbjct: 62 EYLME 66


>gi|153810945|ref|ZP_01963613.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174]
 gi|149832833|gb|EDM87916.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174]
          Length = 71

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +++R ++ L+QK+I      +Q   S  ETG   I I+ +I LA   DT +  L+
Sbjct: 3  FQRIQDLRIDSDLSQKKIGEILHISQRSYSHYETGSRNIPIEMLIRLADYYDTTIDYLV 61


>gi|187929688|ref|YP_001900175.1| helix-turn-helix domain-containing protein [Ralstonia pickettii
          12J]
 gi|187726578|gb|ACD27743.1| helix-turn-helix domain protein [Ralstonia pickettii 12J]
          Length = 97

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + IRK   L+Q+   + +  +++++S LE    +  ++ +  L   ++   
Sbjct: 3  AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSTLERDLKSPTLNKLAELCEVMEIHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|53720722|ref|YP_109708.1| putative transcriptional regulator [Burkholderia pseudomallei
          K96243]
 gi|167740433|ref|ZP_02413207.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
 gi|167817647|ref|ZP_02449327.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
 gi|167912774|ref|ZP_02499865.1| putative transcriptional regulator [Burkholderia pseudomallei
          112]
 gi|254198530|ref|ZP_04904951.1| putative DNA-binding protein [Burkholderia pseudomallei S13]
 gi|254300676|ref|ZP_04968121.1| putative DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|52211136|emb|CAH37125.1| putative transcriptional regulator [Burkholderia pseudomallei
          K96243]
 gi|157810610|gb|EDO87780.1| putative DNA-binding protein [Burkholderia pseudomallei 406e]
 gi|169655270|gb|EDS87963.1| putative DNA-binding protein [Burkholderia pseudomallei S13]
          Length = 356

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTP 76
          +     RK  +LT+KE+  ++G     ++ LETGK +  + + +  LA  L  P
Sbjct: 5  SKLAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSTETLETLARVLGYP 58


>gi|117927278|ref|YP_871829.1| XRE family transcriptional regulator [Acidothermus cellulolyticus
          11B]
 gi|117647741|gb|ABK51843.1| transcriptional regulator, XRE family [Acidothermus
          cellulolyticus 11B]
          Length = 233

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 26/55 (47%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R  R+ A+++ +++    G +  ++S++E G    + + +  +A  L      L
Sbjct: 17 IREQRRLAQMSLRQLARIAGVSNPYLSQVERGLRRPSAEILQQIARGLRISAEAL 71


>gi|145628649|ref|ZP_01784449.1| hypothetical protein CGSHi22121_06525 [Haemophilus influenzae
          22.1-21]
 gi|145632552|ref|ZP_01788286.1| hypothetical protein CGSHi3655_02019 [Haemophilus influenzae
          3655]
 gi|145638786|ref|ZP_01794395.1| hypothetical protein CGSHiII_08726 [Haemophilus influenzae
          PittII]
 gi|144979119|gb|EDJ88805.1| hypothetical protein CGSHi22121_06525 [Haemophilus influenzae
          22.1-21]
 gi|144986747|gb|EDJ93299.1| hypothetical protein CGSHi3655_02019 [Haemophilus influenzae
          3655]
 gi|145272381|gb|EDK12289.1| hypothetical protein CGSHiII_08726 [Haemophilus influenzae
          PittII]
 gi|309750276|gb|ADO80260.1| Putative transcriptional regulator [Haemophilus influenzae R2866]
          Length = 140

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R+    +Q+E+  R   + +  +++E G++ +++D +  +A  LD  + +L+
Sbjct: 5  EKIRKLRETKHWSQEEMAERMSMSLNGYAKIERGETKLHLDKLEQIAQILDIDIVELI 62


>gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus
          porcinus str. Jelinkova 176]
 gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus
          porcinus str. Jelinkova 176]
          Length = 230

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              + IR++ K++Q+ + ++ G ++  IS  E GK+  N  ++  L       
Sbjct: 4  GKQLKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRVS 57


>gi|325959832|ref|YP_004291298.1| helix-turn-helix domain-containing protein [Methanobacterium sp.
          AL-21]
 gi|325331264|gb|ADZ10326.1| helix-turn-helix domain protein [Methanobacterium sp. AL-21]
          Length = 190

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 25/56 (44%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               R +R+   ++ +E+   +  +   + +LE+     ++  ++ +A  LD  L
Sbjct: 6  VGEKIRQLRESKNISIEELAENSDLSVEMVEKLESNTVMPSLSPLLKIAKALDVRL 61


>gi|296268477|ref|YP_003651109.1| XRE family transcriptional regulator [Thermobispora bispora DSM
          43833]
 gi|296091264|gb|ADG87216.1| transcriptional regulator, XRE family [Thermobispora bispora DSM
          43833]
          Length = 145

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 29/65 (44%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          L +        R  R++AK++ +++  +   +  ++S++E G    + + +  +A  L  
Sbjct: 3  LPKVGSLGEFIRQQRQQAKISLRQLAAQASVSTPYLSQVERGLRKPSAEILNQIAKALSI 62

Query: 76 PLWKL 80
              L
Sbjct: 63 SAQAL 67


>gi|294338876|emb|CAZ87213.1| putative Shikimate kinase [Thiomonas sp. 3As]
          Length = 312

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    LT+K +   +  ++  ++ LE+G    +I  ++ +A  L   L +L+
Sbjct: 34 LGERVRALRARRGLTRKAVAIASDVSERHLANLESGVGNASILVLLQVAQALQCSLAELI 93


>gi|291619608|ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103]
 gi|291154638|gb|ADD79222.1| PuuR [Pantoea ananatis LMG 20103]
          Length = 203

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          K    H  D    E  I     + IRK   +T KE+  +   +   IS++E   +   + 
Sbjct: 4  KTALMHSEDLSAVEINI-GVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVR 62

Query: 65 NMIILAHTLDTPLWKLLK 82
           +  L   L+ PL   L+
Sbjct: 63 VLEQLRVVLNVPLTAFLE 80


>gi|269836517|ref|YP_003318745.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
 gi|269785780|gb|ACZ37923.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus
          DSM 20745]
          Length = 810

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDTP 76
          +R  F +  R+ R+ A LT++E+  R G + + I+ LE G+        +  LA  L   
Sbjct: 5  DRPPFGDLLRHYREAASLTREELAERAGLSANGIAALERGERRYPYPHTVRALADALALS 64

Query: 77 LWK 79
            +
Sbjct: 65 EEE 67


>gi|170781284|ref|YP_001709616.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
 gi|169155852|emb|CAQ00977.1| putative DNA-binding protein [Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 191

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M         R+    TQ+++  R+G AQS +SELE+G+ + + + +  L       L
Sbjct: 1  MSIGELVHAARRSRGYTQRQLSGRSGVAQSTLSELESGRRSPSAETVDRLLLATGHQL 58


>gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM
          16795]
 gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM
          16795]
          Length = 364

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N    R+   +TQ E+ +  G ++S +S+ E   +  +I  +  LA   +  L +L+
Sbjct: 7  GKNITKFRRSKGITQDELASYIGVSKSSVSKWENSITYPDIMLLPQLATLFNISLDELM 65


>gi|163868998|ref|YP_001610228.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
 gi|161018675|emb|CAK02233.1| transcriptional regulator [Bartonella tribocorum CIP 105476]
          Length = 130

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R+ R    L+QK + N  G +   I + E G + ++   ++ +A  L  P+
Sbjct: 21 GARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQKLQVPI 75


>gi|149013606|ref|ZP_01834177.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP19-BS75]
 gi|147762797|gb|EDK69752.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP19-BS75]
 gi|301793448|emb|CBW35821.1| Transcriptional regulator [Streptococcus pneumoniae INV104]
          Length = 288

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     +N RKE K++Q+E+    G   Q  IS LE+G+ T   D +  LA  L   +
Sbjct: 4  LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSM 59


>gi|86156777|ref|YP_463562.1| XRE family transcriptional regulator [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85773288|gb|ABC80125.1| transcriptional regulator, XRE family [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 277

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R     +Q  +    G +   +S LE G+ST + + ++ LA  L  PL +
Sbjct: 17 LRAWRTARGKSQLALALEAGVSSRHLSYLENGRSTPSREMVLDLAEVLGVPLRE 70


>gi|50842492|ref|YP_055719.1| transcriptional regulator [Propionibacterium acnes KPA171202]
 gi|282854043|ref|ZP_06263380.1| DNA-binding protein [Propionibacterium acnes J139]
 gi|289425252|ref|ZP_06427029.1| DNA-binding protein [Propionibacterium acnes SK187]
 gi|289427058|ref|ZP_06428774.1| DNA-binding protein [Propionibacterium acnes J165]
 gi|295130569|ref|YP_003581232.1| DNA-binding protein [Propionibacterium acnes SK137]
 gi|50840094|gb|AAT82761.1| possible transcriptional regulator [Propionibacterium acnes
          KPA171202]
 gi|282583496|gb|EFB88876.1| DNA-binding protein [Propionibacterium acnes J139]
 gi|289154230|gb|EFD02918.1| DNA-binding protein [Propionibacterium acnes SK187]
 gi|289159527|gb|EFD07715.1| DNA-binding protein [Propionibacterium acnes J165]
 gi|291375659|gb|ADD99513.1| DNA-binding protein [Propionibacterium acnes SK137]
 gi|313764480|gb|EFS35844.1| helix-turn-helix protein [Propionibacterium acnes HL013PA1]
 gi|313772137|gb|EFS38103.1| helix-turn-helix protein [Propionibacterium acnes HL074PA1]
 gi|313792168|gb|EFS40269.1| helix-turn-helix protein [Propionibacterium acnes HL110PA1]
 gi|313801880|gb|EFS43114.1| helix-turn-helix protein [Propionibacterium acnes HL110PA2]
 gi|313807492|gb|EFS45979.1| helix-turn-helix protein [Propionibacterium acnes HL087PA2]
 gi|313810001|gb|EFS47722.1| helix-turn-helix protein [Propionibacterium acnes HL083PA1]
 gi|313812967|gb|EFS50681.1| helix-turn-helix protein [Propionibacterium acnes HL025PA1]
 gi|313816019|gb|EFS53733.1| helix-turn-helix protein [Propionibacterium acnes HL059PA1]
 gi|313818536|gb|EFS56250.1| helix-turn-helix protein [Propionibacterium acnes HL046PA2]
 gi|313820302|gb|EFS58016.1| helix-turn-helix protein [Propionibacterium acnes HL036PA1]
 gi|313822890|gb|EFS60604.1| helix-turn-helix protein [Propionibacterium acnes HL036PA2]
 gi|313825178|gb|EFS62892.1| helix-turn-helix protein [Propionibacterium acnes HL063PA1]
 gi|313827751|gb|EFS65465.1| helix-turn-helix protein [Propionibacterium acnes HL063PA2]
 gi|313830329|gb|EFS68043.1| helix-turn-helix protein [Propionibacterium acnes HL007PA1]
 gi|313833704|gb|EFS71418.1| helix-turn-helix protein [Propionibacterium acnes HL056PA1]
 gi|313838707|gb|EFS76421.1| helix-turn-helix protein [Propionibacterium acnes HL086PA1]
 gi|314915473|gb|EFS79304.1| helix-turn-helix protein [Propionibacterium acnes HL005PA4]
 gi|314918243|gb|EFS82074.1| helix-turn-helix protein [Propionibacterium acnes HL050PA1]
 gi|314920056|gb|EFS83887.1| helix-turn-helix protein [Propionibacterium acnes HL050PA3]
 gi|314923011|gb|EFS86842.1| helix-turn-helix protein [Propionibacterium acnes HL001PA1]
 gi|314925189|gb|EFS89020.1| helix-turn-helix protein [Propionibacterium acnes HL036PA3]
 gi|314932070|gb|EFS95901.1| helix-turn-helix protein [Propionibacterium acnes HL067PA1]
 gi|314955941|gb|EFT00341.1| helix-turn-helix protein [Propionibacterium acnes HL027PA1]
 gi|314958146|gb|EFT02249.1| helix-turn-helix protein [Propionibacterium acnes HL002PA1]
 gi|314960027|gb|EFT04129.1| helix-turn-helix protein [Propionibacterium acnes HL002PA2]
 gi|314962826|gb|EFT06926.1| helix-turn-helix protein [Propionibacterium acnes HL082PA1]
 gi|314966786|gb|EFT10885.1| helix-turn-helix protein [Propionibacterium acnes HL082PA2]
 gi|314967807|gb|EFT11906.1| helix-turn-helix protein [Propionibacterium acnes HL037PA1]
 gi|314973334|gb|EFT17430.1| helix-turn-helix protein [Propionibacterium acnes HL053PA1]
 gi|314976011|gb|EFT20106.1| helix-turn-helix protein [Propionibacterium acnes HL045PA1]
 gi|314978450|gb|EFT22544.1| helix-turn-helix protein [Propionibacterium acnes HL072PA2]
 gi|314981122|gb|EFT25216.1| helix-turn-helix protein [Propionibacterium acnes HL110PA3]
 gi|314983968|gb|EFT28060.1| helix-turn-helix protein [Propionibacterium acnes HL005PA1]
 gi|314988151|gb|EFT32242.1| helix-turn-helix protein [Propionibacterium acnes HL005PA2]
 gi|314989955|gb|EFT34046.1| helix-turn-helix protein [Propionibacterium acnes HL005PA3]
 gi|315078042|gb|EFT50093.1| helix-turn-helix protein [Propionibacterium acnes HL053PA2]
 gi|315080667|gb|EFT52643.1| helix-turn-helix protein [Propionibacterium acnes HL078PA1]
 gi|315084339|gb|EFT56315.1| helix-turn-helix protein [Propionibacterium acnes HL027PA2]
 gi|315085681|gb|EFT57657.1| helix-turn-helix protein [Propionibacterium acnes HL002PA3]
 gi|315088898|gb|EFT60874.1| helix-turn-helix protein [Propionibacterium acnes HL072PA1]
 gi|315091947|gb|EFT63923.1| helix-turn-helix protein [Propionibacterium acnes HL110PA4]
 gi|315093296|gb|EFT65272.1| helix-turn-helix protein [Propionibacterium acnes HL060PA1]
 gi|315096249|gb|EFT68225.1| helix-turn-helix protein [Propionibacterium acnes HL038PA1]
 gi|315098511|gb|EFT70487.1| helix-turn-helix protein [Propionibacterium acnes HL059PA2]
 gi|315101132|gb|EFT73108.1| helix-turn-helix protein [Propionibacterium acnes HL046PA1]
 gi|315103448|gb|EFT75424.1| helix-turn-helix protein [Propionibacterium acnes HL050PA2]
 gi|315105408|gb|EFT77384.1| helix-turn-helix protein [Propionibacterium acnes HL030PA1]
 gi|315108352|gb|EFT80328.1| helix-turn-helix protein [Propionibacterium acnes HL030PA2]
 gi|327326162|gb|EGE67952.1| putative DNA-binding protein [Propionibacterium acnes HL096PA2]
 gi|327327612|gb|EGE69388.1| putative DNA-binding protein [Propionibacterium acnes HL103PA1]
 gi|327330231|gb|EGE71980.1| putative DNA-binding protein [Propionibacterium acnes HL097PA1]
 gi|327331963|gb|EGE73700.1| putative DNA-binding protein [Propionibacterium acnes HL096PA3]
 gi|327443164|gb|EGE89818.1| helix-turn-helix protein [Propionibacterium acnes HL013PA2]
 gi|327445951|gb|EGE92605.1| helix-turn-helix protein [Propionibacterium acnes HL043PA2]
 gi|327448070|gb|EGE94724.1| helix-turn-helix protein [Propionibacterium acnes HL043PA1]
 gi|327450807|gb|EGE97461.1| helix-turn-helix protein [Propionibacterium acnes HL087PA3]
 gi|327453115|gb|EGE99769.1| helix-turn-helix protein [Propionibacterium acnes HL092PA1]
 gi|327453847|gb|EGF00502.1| helix-turn-helix protein [Propionibacterium acnes HL083PA2]
 gi|328753495|gb|EGF67111.1| helix-turn-helix protein [Propionibacterium acnes HL020PA1]
 gi|328754227|gb|EGF67843.1| helix-turn-helix protein [Propionibacterium acnes HL087PA1]
 gi|328754522|gb|EGF68138.1| helix-turn-helix protein [Propionibacterium acnes HL025PA2]
 gi|328760616|gb|EGF74183.1| putative DNA-binding protein [Propionibacterium acnes HL099PA1]
 gi|332675409|gb|AEE72225.1| putative transcriptional regulator [Propionibacterium acnes 266]
          Length = 91

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +   + R  R     T +E+ +    +  ++SE+E G+   + + +  +   LD P  
Sbjct: 7  REMLGESLREQRFAQGRTLREVSSAARVSLGYLSEVERGQKEASSELISAICTALDLPQS 66

Query: 79 KLLK 82
           L++
Sbjct: 67 DLMR 70


>gi|146280149|ref|YP_001170306.1| hypothetical protein Rsph17025_4150 [Rhodobacter sphaeroides ATCC
          17025]
 gi|145558390|gb|ABP73001.1| hypothetical protein Rsph17025_4150 [Rhodobacter sphaeroides ATCC
          17025]
          Length = 96

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  R    L   ++   TG +   +S +ETGK    +  +  +A  L  PL  LL
Sbjct: 13 VGQRIRVRRAAEGLNLGQLARLTGISGPALSLIETGKRDARLTTLARIAAALRVPLEALL 72


>gi|319654589|ref|ZP_08008671.1| hypothetical protein HMPREF1013_05293 [Bacillus sp. 2_A_57_CT2]
 gi|317393764|gb|EFV74520.1| hypothetical protein HMPREF1013_05293 [Bacillus sp. 2_A_57_CT2]
          Length = 77

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
            N + +R + +LTQKE+   TG +   IS LE  K+     N+  LA      + ++
Sbjct: 6  GVNLKVLRLKNRLTQKEVAAATGLSHRTISNLENNKNFPQRGNLAKLAKLYGVTVEEI 63


>gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661]
 gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661]
          Length = 229

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +RK  K+T   +  + G     +S LE G    +   +  LA  L  P+  L 
Sbjct: 4  GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGYSDALLQKLADALAVPISALF 62


>gi|183600445|ref|ZP_02961938.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC
          25827]
 gi|188019929|gb|EDU57969.1| hypothetical protein PROSTU_04021 [Providencia stuartii ATCC
          25827]
          Length = 91

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  ++ R  R +  L+  E+ N    +Q  IS  E G + +++D +I +   LD  +  +
Sbjct: 12 LLGHHLRQARMKRGLSGHELANIINLSQQQISRYERGVNKLSLDKLIEIIVFLDIDVKDI 71

Query: 81 LK 82
          ++
Sbjct: 72 VR 73


>gi|114327636|ref|YP_744793.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1]
 gi|114315810|gb|ABI61870.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1]
          Length = 286

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R  R E+ L  +EI  R G +++ +   E G+  I +D +  LA  L      LL
Sbjct: 9  GQRLRAYRLESGLRAEEIAARLGVSRAALYRYEKGEV-IKLDTVQRLAELLQVSPLSLL 66


>gi|84686278|ref|ZP_01014173.1| DNA-binding protein, putative [Maritimibacter alkaliphilus
          HTCC2654]
 gi|84665805|gb|EAQ12280.1| DNA-binding protein, putative [Rhodobacterales bacterium
          HTCC2654]
          Length = 463

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 27/64 (42%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R  R    LTQK    + G +  +++++E     ++   ++ LA      
Sbjct: 3  TQKLYAGVKLRETRTRLGLTQKAFAEKLGVSLPYLNQMENNNRPVSTGVVLALAQEFGFD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VAEL 66


>gi|146277511|ref|YP_001167670.1| helix-turn-helix domain-containing protein [Rhodobacter
          sphaeroides ATCC 17025]
 gi|145555752|gb|ABP70365.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC
          17025]
          Length = 428

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 26/65 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +    +  +  R  R +  L Q ++    G + S+++ +E  +  I  + +  LA  L  
Sbjct: 1  MPMTALTGSRVRERRLQLGLRQADLARSAGISASYLNLIEHNRRRIGDEVLGRLARALKI 60

Query: 76 PLWKL 80
              L
Sbjct: 61 EAQTL 65


>gi|326793433|ref|YP_004311253.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1]
 gi|326544197|gb|ADZ89417.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1]
          Length = 266

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +    +N RK+ + +Q ++    G +   +S LETG+S  + D ++ L   L  P  ++
Sbjct: 5  YGVILKNWRKQRRYSQLQLSLEAGISSRHLSFLETGRSLPSKDTVVKLGDFLKIPKREI 63


>gi|325977463|ref|YP_004287179.1| SPBc2 prophage-derived HTH-type transcriptional regulator yonR
          [Streptococcus gallolyticus subsp. gallolyticus ATCC
          BAA-2069]
 gi|325177391|emb|CBZ47435.1| SPBc2 prophage-derived uncharacterized HTH-type transcriptional
          regulator yonR [Streptococcus gallolyticus subsp.
          gallolyticus ATCC BAA-2069]
          Length = 110

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R  RKE KL+Q+++    G     I  +ET K    I  +  +   L+  +    
Sbjct: 13 RIRECRKEKKLSQEKLSEMAGLGIKAIQNIETQKYDFKIQTLEKVIGALNISVEDFF 69


>gi|309780604|ref|ZP_07675349.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ralstonia sp. 5_7_47FAA]
 gi|308920624|gb|EFP66276.1| toxin-antitoxin system, antitoxin component, Xre family
          [Ralstonia sp. 5_7_47FAA]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
          +     R  F    R  R     +Q  +    G +Q  +S LE+ ++  + + ++ LA  
Sbjct: 14 EPPEAARSRFPQLLRFWRTRRGYSQLALALAAGVSQRHVSFLESARAAPSRNMILQLAEE 73

Query: 73 LDTPLWK 79
          L+ PL  
Sbjct: 74 LNVPLRH 80


>gi|307131776|ref|YP_003883792.1| transcriptional regulator-like protein [Dickeya dadantii 3937]
 gi|306529305|gb|ADM99235.1| transcriptional regulator-like protein [Dickeya dadantii 3937]
          Length = 91

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           RN+R E +LT +E+  R G ++  +   E G     I  +  LA  +  PL+ +
Sbjct: 3  IRNMRIERQLTVEELAERAGVSRGLVYRAEEGDMGCAIGAVFELATLVGVPLFTM 57


>gi|291548979|emb|CBL25241.1| Predicted transcriptional regulators [Ruminococcus torques L2-14]
 gi|295110025|emb|CBL23978.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162]
          Length = 67

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F+ N +  R    LTQ+++  + G  +  I  LE  +   ++   I ++  L+ P+  + 
Sbjct: 5  FMCNLKVYRVAQGLTQEQLAEKVGVRRETIMRLEKAQYNPSLKLAIDISRVLNAPIEDIF 64


>gi|284031267|ref|YP_003381198.1| XRE family transcriptional regulator [Kribbella flavida DSM
          17836]
 gi|283810560|gb|ADB32399.1| transcriptional regulator, XRE family [Kribbella flavida DSM
          17836]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80
                  RK   ++Q  +    G ++SW+S++E G   ++ +  +  LA  L   +  L
Sbjct: 3  VGERIGAYRKRRGMSQDALAGLIGMSRSWLSQVERGIRGVDRLSTLNDLATVLRIDVADL 62

Query: 81 L 81
          +
Sbjct: 63 I 63


>gi|257792281|ref|YP_003182887.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
 gi|257476178|gb|ACV56498.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
          2243]
          Length = 104

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 1  MPRRKRDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
          M    ++E       L +R+     +   ++R    L+Q  +    G     IS LE G 
Sbjct: 1  MSEMSKNEKMARKDPLVQRLSADLGSRLLDVRTSEGLSQTTLAEMVGTKHPRISNLEGGL 60

Query: 59 STINIDNMIILAHTLDTPLWKLL 81
            + + +++ LA  LD    +LL
Sbjct: 61 VDVRLSDIVKLARALDVNPGELL 83


>gi|257080388|ref|ZP_05574749.1| transcriptional regulator [Enterococcus faecalis E1Sol]
 gi|256988418|gb|EEU75720.1| transcriptional regulator [Enterococcus faecalis E1Sol]
          Length = 400

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 26/49 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           +  R    ++Q ++    G ++ ++SE+ET K+  +I  +  L + L+
Sbjct: 16 LKERRNAYGVSQNKLATAAGISRQYLSEIETEKTVPSITLLTTLNNVLE 64


>gi|258652988|ref|YP_003202144.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258556213|gb|ACV79155.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 135

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R       R+ R     T +++      +  ++SE+E G+   + + +  +   LD  L 
Sbjct: 4  RDAVGETLRDARNRQNRTLRDVSTAANVSLGYLSEVERGRKEASSELLASICDALDLELS 63

Query: 79 KLL 81
            L
Sbjct: 64 DFL 66


>gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271]
 gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42]
 gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
 gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002]
          Length = 180

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 24/60 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              R +R    L+Q+E+  R G     IS +E  + + ++ ++  +   L   L     
Sbjct: 4  GARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPMTLSDFFT 63


>gi|210608500|ref|ZP_03287876.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787]
 gi|210152991|gb|EEA83997.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F NN +++R+   +TQ ++      ++  I+  ET     + + +  LA+     +  L+
Sbjct: 3  FGNNLKDLRETRNVTQGQLAEYLQVSRPTIAGYETKSRQPDFEKLEKLANYFHVSIDYLV 62


>gi|194289442|ref|YP_002005349.1| anaerobic benzoate catabolism transcriptional regulator
          [Cupriavidus taiwanensis LMG 19424]
 gi|193223277|emb|CAQ69282.1| putative transcriptional regulator, ATP-binding kinase,
          Helix-turn-helix motif, Shikimate kinase motif
          [Cupriavidus taiwanensis LMG 19424]
          Length = 315

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R    +++K++      ++ +++ LETG    ++  +  +A  LD PL  +L
Sbjct: 35 LGERIRSLRASRGMSRKDLARGAAVSERYLANLETGTGNASVLLLRQVARALDVPLPVVL 94


>gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97]
 gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus
          HTA426]
 gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus
          HTA426]
          Length = 121

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M F    R +RK+  +TQK++ ++    +S I   E  +   + + +  LA   +     
Sbjct: 1  MTFGKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDEREPSFEFVRQLADFFNVTTDY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|90425003|ref|YP_533373.1| XRE family transcriptional regulator [Rhodopseudomonas palustris
          BisB18]
 gi|90107017|gb|ABD89054.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris
          BisB18]
          Length = 471

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 28/57 (49%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++       + +R+E +LTQ  +  + G + S++++LE  +  + +   + L  T  
Sbjct: 2  KKTFLGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRPLTLPVALALNKTFG 58


>gi|301056818|ref|YP_003795029.1| transcriptional activator [Bacillus anthracis CI]
 gi|300378987|gb|ADK07891.1| transcriptional activator [Bacillus cereus biovar anthracis str.
          CI]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            N  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|300117865|ref|ZP_07055632.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1]
 gi|298724729|gb|EFI65404.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            N  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|284007380|emb|CBA72775.1| phage transcriptional regulator [Arsenophonus nasoniae]
          Length = 100

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R  R++ +++  ++    G +Q  +S  E G+  IN++ +I ++  LD 
Sbjct: 17 GQMIRKKRQKLQISAADLSALLGISQQHLSRYERGEVRINVEWLIKVSRVLDI 69


>gi|266622898|ref|ZP_06115833.1| DNA-binding protein [Clostridium hathewayi DSM 13479]
 gi|288865341|gb|EFC97639.1| DNA-binding protein [Clostridium hathewayi DSM 13479]
          Length = 110

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          R       RN RK   LT  E+  + G A  +  ++E G   ++ID ++ L  TL+  
Sbjct: 5  RTEAALRIRNRRKALGLTSAEVAEKIGRADHYYGDIERGTCGMSIDTLVELTRTLELS 62


>gi|260580707|ref|ZP_05848533.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|260092524|gb|EEW76461.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 127

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 32/57 (56%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            R +R+  +L+Q+++  +   + S  +++E G++ +  D ++ +A   +  L +L+
Sbjct: 6  KIRMMRELRQLSQEDMAEKMNMSPSGYAKIERGETRLQYDKLVQIAQIFNMNLSELV 62


>gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3]
 gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3]
          Length = 118

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     + +RKE K +QKE+  +   ++S++S++E+GK   + +    +A   +     L
Sbjct: 4  ILSVRIKELRKERKWSQKELGEKVDVSESFVSKVESGKKQPSREVTAKIAEVFNVTTDFL 63

Query: 81 L 81
          L
Sbjct: 64 L 64


>gi|225387376|ref|ZP_03757140.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme
          DSM 15981]
 gi|225046508|gb|EEG56754.1| hypothetical protein CLOSTASPAR_01129 [Clostridium asparagiforme
          DSM 15981]
          Length = 1690

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
               + +R    LTQ ++  R G  QS +S  E  K    I+++  L   L
Sbjct: 30 LAEQIKALRIARGLTQNDLAERMGVPQSQVSRWEN-KGGCEIESLERLCKAL 80


>gi|223985560|ref|ZP_03635614.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM
          12042]
 gi|223962467|gb|EEF66925.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM
          12042]
          Length = 174

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 28/66 (42%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          ++ ++    N R +R+E  ++Q+ +      +   IS  E   +  +I+ +  +A     
Sbjct: 13 MKAKLSLGENLRLLREERGISQEALGQDLSLSDGAISRYENNAAEPDINTLFGMAEIFGV 72

Query: 76 PLWKLL 81
              LL
Sbjct: 73 DFNYLL 78


>gi|188588059|ref|YP_001921522.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498340|gb|ACD51476.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 114

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R + +N  + +R E  L+Q ++      +Q  +S  E G   I+   +  L++       
Sbjct: 2  RCLIMNRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSNFFSVSSD 61

Query: 79 KLL 81
           LL
Sbjct: 62 YLL 64


>gi|196036534|ref|ZP_03103929.1| putative transcriptional regulator PlcR [Bacillus cereus W]
 gi|228949071|ref|ZP_04111343.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|195990867|gb|EDX54840.1| putative transcriptional regulator PlcR [Bacillus cereus W]
 gi|228810644|gb|EEM56993.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            N  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|153812273|ref|ZP_01964941.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174]
 gi|149831680|gb|EDM86767.1| hypothetical protein RUMOBE_02672 [Ruminococcus obeum ATCC 29174]
          Length = 493

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          RKE  +TQ+E+ + TG  +S +S LE      +I  +  L   L     +   
Sbjct: 17 RKEKSMTQQELADATGINRSLLSRLEKKDFIPSIPQLESLGECLGFDPDEAFT 69


>gi|118480383|ref|YP_897534.1| transcription activator PlcR [Bacillus thuringiensis str. Al
          Hakam]
 gi|196045523|ref|ZP_03112754.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108]
 gi|225867332|ref|YP_002752710.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102]
 gi|229187576|ref|ZP_04314716.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1]
 gi|118419608|gb|ABK88027.1| transcription activator PlcR [Bacillus thuringiensis str. Al
          Hakam]
 gi|196023730|gb|EDX62406.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108]
 gi|225786453|gb|ACO26670.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102]
 gi|228595943|gb|EEK53623.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            N  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|126698076|ref|YP_001086973.1| putative conjugative transposon replication initiation factor
          [Clostridium difficile 630]
 gi|256957652|ref|ZP_05561823.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|115249513|emb|CAJ67329.1| putative replication initiation factor Tn5397,CTn3-Orf20
          [Clostridium difficile]
 gi|256948148|gb|EEU64780.1| conserved hypothetical protein [Enterococcus faecalis DS5]
          Length = 402

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL-----D 74
            +V + +  R    L+Q  +   TG  + ++S++ETGK   + +  + L  TL     D
Sbjct: 10 QTWVQHLKEKRLSYGLSQNRLAIATGITRQYLSDIETGKVKPSDELQLALLETLERFNPD 69

Query: 75 TPLWKLL 81
           PL  L 
Sbjct: 70 APLEMLF 76


>gi|45359010|ref|NP_988567.1| Cro repressor family protein [Methanococcus maripaludis S2]
 gi|45047885|emb|CAF31003.1| Cro repressor family Helix-turn-helix motif containing protein
          [Methanococcus maripaludis S2]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 12 SDAILRERMIFVN--NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
              + ER I +N  N +  R++ K+TQ ++   +G +QS +S LE GK  I
Sbjct: 3  DKLKIIERAILLNPENIKVFREKLKITQSKLAEESGVSQSHLSMLEKGKREI 54


>gi|37650510|emb|CAE47444.1| PlcR protein [Bacillus thuringiensis serovar tohokuensis]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            N  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|288922657|ref|ZP_06416832.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288345981|gb|EFC80335.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
          Length = 301

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 9  PHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
                   +         ++R+E  LT + +  +   +Q+ IS+LE G+      ++  
Sbjct: 11 HDDDHGDEPDAAAIGRILGSLRRERGLTGEALGAQVDMSQAKISKLERGQLRPTPADVER 70

Query: 69 LAHTLDTP 76
          +A  L+ P
Sbjct: 71 IARALEAP 78


>gi|257890009|ref|ZP_05669662.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,410]
 gi|260560174|ref|ZP_05832351.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
 gi|257826369|gb|EEV52995.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,410]
 gi|260073741|gb|EEW62066.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          C68]
          Length = 87

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N    RKE  L+Q E+  +    Q  +S  +TG++      M +L+  L  P+ +L 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78


>gi|228915213|ref|ZP_04078808.1| hypothetical protein bthur0012_24330 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228844444|gb|EEM89500.1| hypothetical protein bthur0012_24330 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 63

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +R E   T +E+    G  + +   +E GK     D ++ +A      L
Sbjct: 2  KTLKQLRVEQGYTCREVAEAVGITEVYYWYIENGKRRPYYDLIVKIAEFFKVKL 55


>gi|228950423|ref|ZP_04112583.1| hypothetical protein bthur0007_64790 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228961930|ref|ZP_04123470.1| hypothetical protein bthur0005_53320 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|296503153|ref|YP_003664853.1| transcriptional regulator [Bacillus thuringiensis BMB171]
 gi|228797753|gb|EEM44826.1| hypothetical protein bthur0005_53320 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228809238|gb|EEM55699.1| hypothetical protein bthur0007_64790 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|296324205|gb|ADH07133.1| transcriptional regulator [Bacillus thuringiensis BMB171]
          Length = 63

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
             + +R E   T +E+    G  + +   +E GK     D ++ +A      L
Sbjct: 2  KTLKQLRVEQGYTCREVAEAVGITEVYYWYIENGKRRPYYDLIVKIAEFFKVKL 55


>gi|167761830|ref|ZP_02433957.1| hypothetical protein BACSTE_00173 [Bacteroides stercoris ATCC
          43183]
 gi|167700336|gb|EDS16915.1| hypothetical protein BACSTE_00173 [Bacteroides stercoris ATCC
          43183]
          Length = 90

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 31 KEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          K+A +TQKE+  R G +   +S+   G      D +  +A  L+  + +L +
Sbjct: 10 KQAGITQKELAERIGLSAVGLSKAING--NPTKDTLEKIASALNVRITELFE 59


>gi|90413760|ref|ZP_01221748.1| Hypothetical transcriptional regulator [Photobacterium profundum
          3TCK]
 gi|90325229|gb|EAS41726.1| Hypothetical transcriptional regulator [Photobacterium profundum
          3TCK]
          Length = 126

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              R  R+   +TQ  +    G A+    +LE+GK+   I  ++ +A     PL
Sbjct: 14 ATKIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRISTLVSIADITGRPL 68


>gi|75759185|ref|ZP_00739288.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228899110|ref|ZP_04063382.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL
          4222]
 gi|228906175|ref|ZP_04070064.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL
          200]
 gi|228937680|ref|ZP_04100316.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228950943|ref|ZP_04113064.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228956851|ref|ZP_04118636.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228970568|ref|ZP_04131218.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228977138|ref|ZP_04137539.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis
          Bt407]
 gi|229077745|ref|ZP_04210374.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2]
 gi|229125885|ref|ZP_04254910.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4]
 gi|229148790|ref|ZP_04277039.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550]
 gi|74493347|gb|EAO56460.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|228634678|gb|EEK91258.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550]
 gi|228657543|gb|EEL13356.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4]
 gi|228705567|gb|EEL57924.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2]
 gi|228782586|gb|EEM30763.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis
          Bt407]
 gi|228789155|gb|EEM37084.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228802892|gb|EEM49725.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228808670|gb|EEM55168.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228821967|gb|EEM67959.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228853584|gb|EEM98352.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL
          200]
 gi|228860551|gb|EEN04939.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL
          4222]
          Length = 83

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +R E  ++Q  + ++   ++  I+ +E  K   ++     LA  L T + KL 
Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79


>gi|69245870|ref|ZP_00603687.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|256853747|ref|ZP_05559112.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          T8]
 gi|257879179|ref|ZP_05658832.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|257882002|ref|ZP_05661655.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,502]
 gi|68195572|gb|EAN10014.1| Helix-turn-helix motif [Enterococcus faecium DO]
 gi|256710690|gb|EEU25733.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          T8]
 gi|257813407|gb|EEV42165.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,230,933]
 gi|257817660|gb|EEV44988.1| helix-turn-helix domain-containing protein [Enterococcus faecium
          1,231,502]
          Length = 87

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N    RKE  L+Q E+  +    Q  +S  +TG++      M +L+  L  P+ +L 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78


>gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
 gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC BAA-365]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ +     R++R+   ++Q+E+    G ++  IS  E G+    +  +  +A+     
Sbjct: 2  EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60


>gi|295101241|emb|CBK98786.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii L2-6]
          Length = 74

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M++    + +R +  L Q ++      AQ+  S+ E GK  I ++ +I LA   D  +
Sbjct: 1  MLYTERIKALRSDHDLNQTQVARAIHVAQTTYSDYEKGKVRIPVECLIQLAKFYDVDM 58


>gi|294101936|ref|YP_003553794.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
 gi|293616916|gb|ADE57070.1| transcriptional regulator, XRE family [Aminobacterium colombiense
          DSM 12261]
          Length = 143

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISE-LETGKSTINIDNMIILAHTLD 74
          R+ F+N+     +   ++QKE+  R G ++++IS+ + +  S   +  MI L   LD
Sbjct: 26 RLDFLNSLIATIEAKGISQKELGKRLGKSEAYISKVINSNSSNFTLKTMIQLCLALD 82


>gi|292653871|ref|YP_003533769.1| Helix-turn-helix, putative [Haloferax volcanii DS2]
 gi|291369721|gb|ADE01949.1| Helix-turn-helix, putative [Haloferax volcanii DS2]
          Length = 66

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
          N+ R  R E  +TQ+E+    G ++  I  +E  +   +++    LA   D  + +L  P
Sbjct: 3  NDIRVKRAEEHITQEELATAVGVSRQTIYAIEHSRYDPSLELAFKLARYFDCSVEELFTP 62


>gi|260885325|ref|ZP_05734776.2| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella tannerae ATCC 51259]
 gi|260852826|gb|EEX72695.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella tannerae ATCC 51259]
          Length = 81

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
                 RKEAKLTQ E+  R G  +S+IS++E G     +     L   +D
Sbjct: 19 AQILLQARKEAKLTQSELAKRVGTTKSYISKIENGVIEPGVGLFFRLIAAMD 70


>gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|253579633|ref|ZP_04856902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849134|gb|EES77095.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 74

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 30/59 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              +++R +A ++QK++      +Q   S  ETG   I ++ +I LA+  D  +  L+
Sbjct: 6  FQRIQDLRTDADMSQKQLSEILHISQRSYSHYETGSRNIPVEMLIRLANYYDISVDYLV 64


>gi|209559928|ref|YP_002286400.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          NZ131]
 gi|209541129|gb|ACI61705.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes
          NZ131]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
                 RK+  L+Q+E+  +   ++  IS  E  K+   + ++++L+      L +L+K
Sbjct: 4  GQQIIRYRKQQALSQEELAEKVYVSRQSISHWENDKTYPVLASLLLLSQIFQVSLNQLIK 63


>gi|182438457|ref|YP_001826176.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
 gi|178466973|dbj|BAG21493.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus
          NBRC 13350]
          Length = 281

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 16 LRERMIFVNNFRNIRKE---AKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHT 72
           + R       R +R E    +LT   +  R G+AQS +S+LE G+ T   +++   A  
Sbjct: 6  QKAREDLGRRLRVLRIECPHGRLTGTALSARLGWAQSKVSKLENGRQTPTAEDLRAWADA 65

Query: 73 LDTP 76
             P
Sbjct: 66 TGHP 69


>gi|196042830|ref|ZP_03110069.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|229185561|ref|ZP_04312741.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1]
 gi|196026314|gb|EDX64982.1| DNA-binding protein [Bacillus cereus 03BB108]
 gi|228597956|gb|EEK55596.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|118478614|ref|YP_895765.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118417839|gb|ABK86258.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|94263490|ref|ZP_01287302.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
 gi|93456128|gb|EAT06271.1| Helix-turn-helix motif [delta proteobacterium MLMS-1]
          Length = 121

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            R  R    LTQ ++   TG  Q  ISE+E GK  I  +    LA  L+ 
Sbjct: 66  LRGYRYREDLTQAQLAELTGIPQRHISEMENGKRPIGKERARKLAEVLNV 115


>gi|22538127|ref|NP_688978.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|22535034|gb|AAN00851.1|AE014281_20 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F  N   +RKE  ++Q E+ N+    +  IS+ E  K+     N+  +A        +L 
Sbjct: 8  FGPNLTRLRKERGISQVELSNQLQIGKQSISDYEKQKAFPTFANLDKIAEYFRATPTQLF 67


>gi|329577286|gb|EGG58747.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis
          TX1467]
          Length = 377

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 16 LRERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++ER+ F      + R    LT KE+  ++G ++  IS  E+GK+    ++++ L   L+
Sbjct: 1  MKERIAFNPKQLTSARISRGLTMKELAEKSGLSRQMISNYESGKTIQKAESLLKLLSVLN 60

Query: 75 TP 76
           P
Sbjct: 61 FP 62


>gi|329116452|ref|ZP_08245169.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
 gi|326906857|gb|EGE53771.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis
          NCFD 2020]
          Length = 122

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    ++ R E   +Q  + ++   ++  IS+ E  ++  ++ N+I L+   +  L +L+
Sbjct: 4  FSEQLKHFRLEKNFSQDYLADQLFISRQAISKWENNEAYPDMTNLIKLSTIFEVSLDQLI 63


>gi|325661078|ref|ZP_08149705.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|331085193|ref|ZP_08334279.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|325472585|gb|EGC75796.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|330407976|gb|EGG87466.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R++ K++Q+E+  +   ++  IS  ET KS  ++ ++I L++  +  L   +K
Sbjct: 4  GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLISLSNIFNVSLDNFIK 63


>gi|295688772|ref|YP_003592465.1| XRE family transcriptional regulator [Caulobacter segnis ATCC
          21756]
 gi|295430675|gb|ADG09847.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC
          21756]
          Length = 115

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R       ++ R+ A LTQ E+  +TG    +++S++E G   + I+   + A +L    
Sbjct: 18 RREAGRWLKSAREAAGLTQAELAEKTGLRYYTFVSQVENGLGRVPIEAQAVWAESLGLDP 77

Query: 78 WKLLK 82
           +  +
Sbjct: 78 SQFAR 82


>gi|256423820|ref|YP_003124473.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256038728|gb|ACU62272.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 193

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  +  R+E  +T +++ +R   ++  IS++E  ++  ++  +I +   L+  L    K
Sbjct: 11 NRIKEKRREKNITVQDLADRAKVSKGLISQIENSRTIPSLIVLIDIIRALEIDLNVFFK 69


>gi|296137789|ref|YP_003645032.1| XRE family transcriptional regulator [Tsukamurella paurometabola
          DSM 20162]
 gi|296025923|gb|ADG76693.1| transcriptional regulator, XRE family [Tsukamurella paurometabola
          DSM 20162]
          Length = 377

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS--TINIDNMIILAHTLDTPLWK 79
               +  R    ++Q+++ +R   ++SWI +LE  +      +  +  ++  L  PL  
Sbjct: 6  LGERIKAWRLRRGMSQQDLADRMSRSKSWIQKLEGSERHSDPRLSVLREVSEALGVPLSI 65

Query: 80 LLK 82
          L++
Sbjct: 66 LIR 68


>gi|171916012|ref|ZP_02931482.1| transcriptional regulator, XRE family protein [Verrucomicrobium
          spinosum DSM 4136]
          Length = 70

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R E  LTQ E+    G ++  ++ LET K + ++D    ++     P+ ++ +
Sbjct: 3  NRLKVLRAEHNLTQDELGKILGVSRQAVNALETEKHSPSLDLAYRISTVFKQPVEQIFQ 61


>gi|168213632|ref|ZP_02639257.1| putative DNA-binding protein [Clostridium perfringens CPE str.
          F4969]
 gi|170714789|gb|EDT26971.1| putative DNA-binding protein [Clostridium perfringens CPE str.
          F4969]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            NN +  R +  LTQKE+  +   ++  I + E+GK  I    +  L    +  L  LL
Sbjct: 6  LGNNIKKYRNQIGLTQKELGEKILKSEISIRKYESGKINIPPSTLFELCKIFNVTLGTLL 65


>gi|156933898|ref|YP_001437814.1| hypothetical protein ESA_01724 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532152|gb|ABU76978.1| hypothetical protein ESA_01724 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 176

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 27/62 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +R++   +  +    TG +++ + ++E  +S+  +  +  +A   + P    +
Sbjct: 7  LAQTLKALRQQKNWSLTQAAQETGVSKAMLGQIERNESSPTVATLWKIATGFNVPFSAFI 66

Query: 82 KP 83
           P
Sbjct: 67 TP 68


>gi|153954897|ref|YP_001395662.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855349|ref|YP_002472471.1| hypothetical protein CKR_2006 [Clostridium kluyveri NBRC 12016]
 gi|146347755|gb|EDK34291.1| Predicted transcriptional regulator [Clostridium kluyveri DSM
          555]
 gi|219569073|dbj|BAH07057.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 71

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R E  ++Q ++ +  G ++  IS +ETG+   +    +IL+  L      L 
Sbjct: 9  NRLKVARAELNISQGQLASMAGVSRQTISSIETGQYCPSAKLALILSKCLQKNFEDLF 66


>gi|21231057|ref|NP_636974.1| hypothetical protein XCC1604 [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66768938|ref|YP_243700.1| hypothetical protein XC_2631 [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|21112686|gb|AAM40898.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|66574270|gb|AAY49680.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. 8004]
          Length = 113

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSW-----ISELETGKSTINIDN 65
          +         ++    R+ R     TQ E+  R G   S      +S  ETG+   +   
Sbjct: 1  MPKPKTPA-TVYGTRLRHARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDPAT 59

Query: 66 MIILAHTLDTP 76
             LA  L  P
Sbjct: 60 AEALAKALKLP 70


>gi|324328969|gb|ADY24229.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus
          YBT-020]
          Length = 69

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P+ ++ +
Sbjct: 5  NRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEEIFE 63


>gi|313667428|ref|YP_004047712.1| hypothetical protein NLA_0720 [Neisseria lactamica ST-640]
 gi|313004890|emb|CBN86316.1| hypothetical protein NLA_0720 [Neisseria lactamica 020-06]
          Length = 136

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 30/60 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R +R+  + +Q+ +  +   + +  +++E G++ +N+  +  +A      L  LL+P
Sbjct: 5  EKIRLMRELKQWSQETVAEKLNLSTNGYAKIERGETKLNLPRLEQIATIFHVDLMDLLQP 64


>gi|310822072|ref|YP_003954430.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
 gi|309395144|gb|ADO72603.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
          Length = 119

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  R  R    LTQ E+  + G A    S LE GK   ++  ++ +   L     +LL
Sbjct: 10 GSAAREARTHLGLTQAEVAGKLGIAHMVYSRLERGKMLPSVPTLLRMCSVLHISADELL 68


>gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6]
 gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6]
          Length = 141

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+E KL+QKE+    G     +   E G+S I  +    LA      +  LL
Sbjct: 2  NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAQQLADFFGVSVGYLL 59


>gi|288801315|ref|ZP_06406769.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
 gi|288331698|gb|EFC70182.1| conserved hypothetical protein [Prevotella sp. oral taxon 299
          str. F0039]
          Length = 74

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          +  R I     + +RK+ KLTQ ++  + G    ++ ELE GK+T+ +D +  +     +
Sbjct: 1  MVARTIIAQYVKEMRKKYKLTQVDLSEKAGVGLRFVQELEQGKTTLRLDKVNKVFELFGS 60

Query: 76 P 76
           
Sbjct: 61 E 61


>gi|262380971|ref|ZP_06074109.1| predicted protein [Bacteroides sp. 2_1_33B]
 gi|262296148|gb|EEY84078.1| predicted protein [Bacteroides sp. 2_1_33B]
          Length = 88

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++I  E  LT KE+ +  G +   +  +  GK   + + +  +A  L+ P W+L 
Sbjct: 3  NRIKDILSEKGLTAKELSSVIGLSSVSLYNIINGKQEASANTLNAIATALNVPFWQLF 60


>gi|256839127|ref|ZP_05544637.1| predicted protein [Parabacteroides sp. D13]
 gi|256740046|gb|EEU53370.1| predicted protein [Parabacteroides sp. D13]
          Length = 106

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  ++I  E  LT KE+ +  G +   +  +  GK   + + +  +A  L+ P W+L 
Sbjct: 20 NRIKDILSEKGLTAKELSSVIGLSSVSLYNIINGKQEASANTLNAIATALNVPFWQLF 77


>gi|240950441|ref|ZP_04754690.1| hypothetical protein AM305_04097 [Actinobacillus minor NM305]
 gi|240295024|gb|EER45885.1| hypothetical protein AM305_04097 [Actinobacillus minor NM305]
          Length = 95

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R+   LTQ E+ +R G + +  +++E G++ + I  +  +    DT + +L+
Sbjct: 5  EKIRFLRESKSLTQDEMADRLGMSTNGYAKIERGETRLTIPKLEQIVEVFDTDILELM 62


>gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC
          27750]
 gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC
          27750]
          Length = 115

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          N  R +R+E  +TQ  +    G AQ  IS  E G+   ++  +I L+  LD  +
Sbjct: 6  NRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASM 59


>gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1]
 gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1]
          Length = 374

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|170747509|ref|YP_001753769.1| XRE family transcriptional regulator [Methylobacterium
          radiotolerans JCM 2831]
 gi|170654031|gb|ACB23086.1| transcriptional regulator, XRE family [Methylobacterium
          radiotolerans JCM 2831]
          Length = 186

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R +R    L+Q+ +  R G   S IS +E  +   ++  +  +   +   + +  
Sbjct: 5  VGARLRFVRARHGLSQRTLAKRAGVTNSAISLIEANRVNPSVGALKRILDGVPIGMAEFF 64


>gi|168214025|ref|ZP_02639650.1| helix-turn-helix domain protein [Clostridium perfringens CPE str.
          F4969]
 gi|170714494|gb|EDT26676.1| helix-turn-helix domain protein [Clostridium perfringens CPE str.
          F4969]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLWKLLK 82
          R++  +++ ++    G + ++I++LE G KS  +++  I +A+ L+ P+   L+
Sbjct: 11 REKKGISKSQLAREIGVSPAYITKLENGEKSNPSLELKIKIANVLEQPITVFLE 64


>gi|160936310|ref|ZP_02083680.1| hypothetical protein CLOBOL_01203 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440779|gb|EDP18510.1| hypothetical protein CLOBOL_01203 [Clostridium bolteae ATCC
          BAA-613]
          Length = 407

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 27/55 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
            +V   +  R+   ++Q+++    G  + ++S++ETGK+  +      +   L+
Sbjct: 18 ETWVREIKEKREIYGISQQKLALAAGITRPYLSDIETGKAHPSEALQEAIMEALE 72


>gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC
          3502]
 gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str.
          ATCC 3502]
          Length = 144

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 + +R+E  + Q E+       +  +S  E  K T + D +  +A   +  +  
Sbjct: 2  KTIGERIKELREEKGINQLELSKILNVHKGSVSNWENNKRTPDADMLTKIADFFNCSVDY 61

Query: 80 LL 81
          LL
Sbjct: 62 LL 63


>gi|119475767|ref|ZP_01616120.1| hypothetical protein GP2143_18146 [marine gamma proteobacterium
          HTCC2143]
 gi|119451970|gb|EAW33203.1| hypothetical protein GP2143_18146 [marine gamma proteobacterium
          HTCC2143]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          F    +  R    L+Q+E+ +R   +   IS LE G S  + +    +A  L+
Sbjct: 10 FGRFLKFWRGVHSLSQEELAHRLDSSTRHISRLENGSSRPSENMAQDIAAALE 62


>gi|145593398|ref|YP_001157695.1| helix-turn-helix domain-containing protein [Salinispora tropica
          CNB-440]
 gi|145302735|gb|ABP53317.1| helix-turn-helix domain protein [Salinispora tropica CNB-440]
          Length = 402

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-P 76
          +++I       +R+ A L+++ +    G + + +  +E G+ ++ +     LA  L    
Sbjct: 4  QQIIPGERVERLRRAAGLSRERLAGLAGLSATTVKFIENGRRSLTLRAAQQLAPHLGVRD 63

Query: 77 LWKLLKP 83
          L  L  P
Sbjct: 64 LGDLFGP 70


>gi|27375181|ref|NP_766710.1| hypothetical protein bll0070 [Bradyrhizobium japonicum USDA 110]
 gi|27348317|dbj|BAC45335.1| bll0070 [Bradyrhizobium japonicum USDA 110]
          Length = 131

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          MP   +      + +      F N     RK   LTQ ++ ++   +++ I+ +E+G+  
Sbjct: 1  MPEAAQTSAMAGNPVYIA---FGNAVSTRRKALSLTQAQLASKVKMSRASIANIESGRQN 57

Query: 61 INIDNMIILAHTLDTPLWKLLKP 83
          I + ++  LA  LD      L P
Sbjct: 58 ILLHHVYALATALDFAKVADLLP 80


>gi|150018373|ref|YP_001310627.1| XRE family transcriptional regulator [Clostridium beijerinckii
          NCIMB 8052]
 gi|149904838|gb|ABR35671.1| transcriptional regulator, XRE family [Clostridium beijerinckii
          NCIMB 8052]
          Length = 68

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          N    IRK+  + Q+E+      ++  I  LE G+   +I     +A+  +  
Sbjct: 3  NRLEEIRKKHGIKQEELAIALEVSRQTIGSLENGRYNPSIILAFKIANYFNMS 55


>gi|148548767|ref|YP_001268869.1| XRE family transcriptional regulator [Pseudomonas putida F1]
 gi|148512825|gb|ABQ79685.1| transcriptional regulator, XRE family [Pseudomonas putida F1]
          Length = 184

 Score = 45.0 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP---LWKLLKP 83
          +RK   LT  E+  R   +  ++S++E G S   + ++  ++  L       + L KP
Sbjct: 17 LRKFKNLTLGELAERINRSVGFLSQVERGVSRPTVADLTAISEALGVSTAYFYNLSKP 74


>gi|307280502|ref|ZP_07561551.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
 gi|306504050|gb|EFM73266.1| helix-turn-helix protein [Enterococcus faecalis TX0860]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 29/59 (49%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + +R +     ++ R E  ++Q ++    G ++ +++++E G  T +   M  +   L+
Sbjct: 1  MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFDQLE 59


>gi|302385132|ref|YP_003820954.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
 gi|302195760|gb|ADL03331.1| transcriptional regulator, XRE family [Clostridium
          saccharolyticum WM1]
          Length = 174

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 25/52 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N  + +RK+  L+Q+E   R    ++ IS++E G +  +   + ++      
Sbjct: 3  NRIKEVRKKLGLSQEEFGKRLRVTKTSISKIEAGINNPSDQTIKLICSEFSV 54


>gi|241763784|ref|ZP_04761831.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
 gi|241367003|gb|EER61399.1| transcriptional regulator, XRE family [Acidovorax delafieldii
          2AN]
          Length = 102

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              RK A LTQ ++  R G ++  +   E G+       +  +A  L   L
Sbjct: 9  LALARKAAGLTQAQLAERAGLSRMTVQRTEGGELDPRFSTLAEMARVLGMDL 60


>gi|254390935|ref|ZP_05006145.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294816563|ref|ZP_06775205.1| XRE family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|326445482|ref|ZP_08220216.1| XRE family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
 gi|197704632|gb|EDY50444.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294321378|gb|EFG03513.1| XRE family transcriptional regulator [Streptomyces clavuligerus
          ATCC 27064]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 16 LRERMIFV-NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
             R I+     R +R+E  + Q E+      + S+ ++LE  +  +    ++ +A    
Sbjct: 5  PTGRRIYAHAKLRRLRREHGMNQVEMARALAISTSYANQLEQSQRPLTAPVLLRIAEVFG 64

Query: 75 TPL 77
             
Sbjct: 65 VDP 67


>gi|160944362|ref|ZP_02091590.1| hypothetical protein FAEPRAM212_01872 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444144|gb|EDP21148.1| hypothetical protein FAEPRAM212_01872 [Faecalibacterium
          prausnitzii M21/2]
          Length = 102

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +F      +R +  ++ +++    G    +I  +E+G +   + N   +   L+    +
Sbjct: 4  KLFSKRLAELRIQKGVSARDMSLSLGQNPGYIRTIESGSAFPAMSNFFYICEYLNVTPQE 63

Query: 80 LL 81
            
Sbjct: 64 FF 65


>gi|28631122|gb|AAO49680.1| Eag0009 [Haemophilus influenzae]
 gi|301169931|emb|CBW29535.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 130

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 34/58 (58%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R +R+  + +Q+E+  +   + +  +++E G+S+IN+D +  +A+  +  + +L+ 
Sbjct: 6  KIRVMREINQWSQEEMAEKLSMSPNGYAKIERGQSSINLDKLQQIANVFNIDMGELIT 63


>gi|332663821|ref|YP_004446609.1| helix-turn-helix domain-containing protein [Haliscomenobacter
          hydrossis DSM 1100]
 gi|332332635|gb|AEE49736.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM
          1100]
          Length = 95

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
               +N RK   +TQ  +      + + + +LE G+   +++ +  L   L   L
Sbjct: 32 LGEYLKNRRKALGITQPHLAELAQISTNTLYKLERGQGNPSLEVLNKLTEVLGLEL 87


>gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
          Length = 144

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                +R++   T+ ++   +G +QS +SE+E G     I  +  +    +  L    
Sbjct: 4  GKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLADFF 62


>gi|309812830|ref|ZP_07706568.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
 gi|308433247|gb|EFP57141.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185]
          Length = 411

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIR-NRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          M F    +  RK+A L+Q E+  NR   + S++S LE+G+ T   + +      L     
Sbjct: 1  MSFGERLKAARKQAGLSQTELAGNRC--SVSYVSHLESGRRTPTPEMLRYFETALGLAPG 58

Query: 79 KL 80
           L
Sbjct: 59 SL 60


>gi|307324537|ref|ZP_07603744.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
 gi|306889781|gb|EFN20760.1| transcriptional regulator, XRE family [Streptomyces
          violaceusniger Tu 4113]
          Length = 406

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLDTPLW 78
              +    +R+   +TQ+E+  R+G     I +LE   + +  +  + +LA  LDT L 
Sbjct: 4  KSIGDRLGELRRYRDITQEELAERSGVHVDTIRKLEQNVRQSARLGTLRMLARALDTELD 63

Query: 79 KLL 81
          +LL
Sbjct: 64 RLL 66


>gi|291545678|emb|CBL18786.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5]
          Length = 166

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R E  ++Q E+ ++    +  +S  E G +  N D + +L+   D  +  LL
Sbjct: 9  KLRTERGMSQDELADKIMVTRQAVSRWENGDTVPNTDTLKLLSKEFDVSINTLL 62


>gi|293401672|ref|ZP_06645814.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304930|gb|EFE46177.1| toxin-antitoxin system, antitoxin component, Xre family
          [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 69

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R++R++  L+Q E+      +Q   S  ETG+ ++ ++ +  LA   +T +  L+
Sbjct: 6  KRLRDLREDHDLSQAELAKFLNISQRTYSYYETGERSVPVEILAKLAKFYNTTIEYLI 63


>gi|293380602|ref|ZP_06626657.1| helix-turn-helix protein [Lactobacillus crispatus 214-1]
 gi|290922849|gb|EFD99796.1| helix-turn-helix protein [Lactobacillus crispatus 214-1]
          Length = 76

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS +E  K   I+I  +  +A  L+T    +
Sbjct: 5  LGEEISRRRREQKLTQEDLAELSDLSVNFISRVERTKDQNISIQKLDSIAKALNTTTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|271502478|ref|YP_003335504.1| XRE family transcriptional regulator [Dickeya dadantii Ech586]
 gi|270346033|gb|ACZ78798.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586]
          Length = 110

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68
          +   +   +F    ++ R    L+QK +    G     A + I+  E G    NI     
Sbjct: 2  NTSQQRHDVFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKR 61

Query: 69 LAHTLDTPL 77
          LA  L+ PL
Sbjct: 62 LAEALNVPL 70


>gi|260563769|ref|ZP_05834255.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
 gi|260153785|gb|EEW88877.1| helix-turn-helix domain-containing protein [Brucella melitensis
          bv. 1 str. 16M]
          Length = 206

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +   + R +R+ A  TQ E+  R G  Q+ IS++E  +  + I ++      L   L
Sbjct: 21 VVGQSLRALRQAAGFTQIEMAQRLGVGQAAISKIEQ-RGDVQISSLQRYVEALGASL 76


>gi|302546343|ref|ZP_07298685.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302463961|gb|EFL27054.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          F    + +R+ A LTQ E+  R G++   I+ +E G+     D +      L 
Sbjct: 14 FGRQLKLLREAAGLTQAELGARVGYSADQIASVECGRRIPKPDLIDKADEVLG 66


>gi|239904800|ref|YP_002951538.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
 gi|239794663|dbj|BAH73652.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            E     +  R  R   K++Q ++      +   +S +ETGKS  +   +  +A +L  
Sbjct: 8  PAEPRTVGDLIRFWRNTKKISQMDLALEVDVSTRHLSFVETGKSRPSRKLVFKIAESLKM 67

Query: 76 PLWK 79
          P   
Sbjct: 68 PFRH 71


>gi|257063412|ref|YP_003143084.1| Helix-turn-helix protein [Slackia heliotrinireducens DSM 20476]
 gi|256791065|gb|ACV21735.1| Helix-turn-helix protein [Slackia heliotrinireducens DSM 20476]
          Length = 68

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 35 LTQKEIRNRTGFAQ-SWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          ++Q+++    G +  S+IS++E+G+   N+  ++ +A  LD  + +LLK
Sbjct: 1  MSQEQLGAMIGMSDHSYISKVESGEEIPNLARLLDIADALDVNVGQLLK 49


>gi|225419785|ref|ZP_03762088.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme
          DSM 15981]
 gi|225041568|gb|EEG51814.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme
          DSM 15981]
          Length = 264

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL-- 80
              R  RK  ++T +++ +    +++ +S+ E G+ T++++ +  +A  L     +L  
Sbjct: 31 GGRIRMYRKAREMTLQQLADSIHKSRASVSKYENGEITLDVETLFEIAQVLMVSPSQLMD 90

Query: 81 LKP 83
          ++P
Sbjct: 91 VRP 93


>gi|197284840|ref|YP_002150712.1| phage protein [Proteus mirabilis HI4320]
 gi|194682327|emb|CAR42123.1| phage protein [Proteus mirabilis HI4320]
          Length = 85

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMIILAHTLDTP 76
            R  RK AKLTQ  +    G     A+S IS+ E+G    + + +  LA  L+ P
Sbjct: 5  RLRYARKMAKLTQTRLGTLAGMDVASARSRISQYESGLHKPSFEVVCKLAKILNLP 60


>gi|168213146|ref|ZP_02638771.1| immunity repressor protein [Clostridium perfringens CPE str.
          F4969]
 gi|170715320|gb|EDT27502.1| immunity repressor protein [Clostridium perfringens CPE str.
          F4969]
          Length = 117

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R E  LT  E+++  G  ++ +S  E G     ID     A+  +  L  +L
Sbjct: 4  FSKRLKQLRNEKGLTLDELKDALGTTKATLSRYENGLREPKIDFANKAANYFNVSLDYIL 63


>gi|241207094|ref|YP_002978190.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240860984|gb|ACS58651.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM1325]
          Length = 121

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R  R   +++Q E+    G     I + E G + ++   +  +A  LD  +  L
Sbjct: 8  IVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFLDVEISAL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC
          27755]
 gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC
          27755]
          Length = 257

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 26/54 (48%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R E  ++Q E+ ++    +  +S  E G +  N D + +L+   D  +  LL
Sbjct: 11 KLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLSKEFDVSINTLL 64


>gi|86742218|ref|YP_482618.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86569080|gb|ABD12889.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
          Length = 103

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R++   T +E+ +    +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRMLGEALRRRRQDQHRTLREVSSAARVSLGYLSEVERGQKEASSELLAAICDALGVRLA 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 DLLR 68


>gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus
          E33L]
 gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus
          cereus E33L]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|158313060|ref|YP_001505568.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158108465|gb|ABW10662.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
          Length = 106

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +     R  R++   T +E+ +    +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRVIGEALRRRRQDQHRTLREVSSAARVSLGYLSEVERGQKEASSELLASICDALGVRLA 64

Query: 79 KLLK 82
           LL+
Sbjct: 65 DLLR 68


>gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
 gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus
          JW 200]
          Length = 160

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     + +RK+  LTQK++    G +   +   E  + T   D +  +A   +  +  L
Sbjct: 1  MLGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQRTPPPDILQKIADFFNVSVDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|315149981|gb|EFT93997.1| toxin-antitoxin system, antitoxin component, Xre family
          [Enterococcus faecalis TX0012]
          Length = 86

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN + +R +   TQ ++  + G ++  +  +E  K T +++    +A     P+ ++ 
Sbjct: 21 NNLKVLRAQKNWTQADLAEKVGISRQAVISIEKYKYTPSLELAFDIAAAFKKPVTEVF 78


>gi|309775263|ref|ZP_07670272.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308916926|gb|EFP62657.1| putative transcriptional repressor [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 65

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +  R    LTQ+E+  +    +  I+ +E G    +I+  I +   L   L  L 
Sbjct: 6  KLKAARAAMDLTQEELAVKVHVTRQTINAIEKGDYNPSINLCIAICRELQKTLNDLF 62


>gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306496398|gb|EFM65972.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
          Length = 128

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          +L ++  +    R  RK    TQKE+  +    Q  ++  E   +  N+D++  L+  L 
Sbjct: 16 VLMKQKQYAKVIREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALG 75

Query: 75 TPLWKLL 81
          TP+   L
Sbjct: 76 TPVSHFL 82


>gi|303238807|ref|ZP_07325339.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302593686|gb|EFL63402.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 194

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N   ++RKE  +TQK++ +    +   IS+ E G    ++  +  L+  L   + K+L
Sbjct: 7  GNLICSLRKEKGMTQKQLADTMNISDKTISKWERGLGCPDVSLLPELSALLGVNIEKIL 65


>gi|294788364|ref|ZP_06753607.1| toxin-antitoxin system, antitoxin component, Xre family
           [Simonsiella muelleri ATCC 29453]
 gi|294483795|gb|EFG31479.1| toxin-antitoxin system, antitoxin component, Xre family
           [Simonsiella muelleri ATCC 29453]
          Length = 120

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 24  NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           +     R    LTQ +   + G +Q+ +S++E   S          A   D    +L
Sbjct: 62  SQIAAWRIYRGLTQAQAAEKAGISQAALSQIERKNSRPQAQTREQFAQIYDCEPDQL 118


>gi|294615610|ref|ZP_06695466.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1636]
 gi|291591553|gb|EFF23206.1| transcriptional regulator, Cro/CI family [Enterococcus faecium
          E1636]
 gi|323481029|gb|ADX80468.1| helix-turn-helix family protein [Enterococcus faecalis 62]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 30/59 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + +R +     ++ R E  ++Q ++    G ++ +++++E G  T +   M  + + L+
Sbjct: 1  MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLE 59


>gi|256425817|ref|YP_003126470.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM
          2588]
 gi|256040725|gb|ACU64269.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM
          2588]
          Length = 250

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 29/62 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N + +RK+   TQ+E  ++ G  +S +   E  ++    + + +++      +  L
Sbjct: 3  IVCRNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAEPRTEVLELVSDMFRISIDDL 62

Query: 81 LK 82
          L+
Sbjct: 63 LR 64


>gi|229166202|ref|ZP_04293962.1| Helix-turn-helix repressor protein [Bacillus cereus AH621]
 gi|228617300|gb|EEK74365.1| Helix-turn-helix repressor protein [Bacillus cereus AH621]
          Length = 71

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N     RK+  L+Q+++  + G ++  I  +E GK   ++     +A T  T +  + 
Sbjct: 3  NKMVEYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEHVF 60


>gi|256830616|ref|YP_003159344.1| helix-turn-helix domain-containing protein [Desulfomicrobium
          baculatum DSM 4028]
 gi|256579792|gb|ACU90928.1| helix-turn-helix domain protein [Desulfomicrobium baculatum DSM
          4028]
          Length = 355

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +     +  RK A L+ + +  + G + +WI++ E  ++  +   ++ L   L       
Sbjct: 1  MIGERLQRARKAADLSLRNLAEQVGVSHTWINKFEKDQAMPDSKTLLKLGKVLGVRSEYF 60

Query: 81 LKP 83
           +P
Sbjct: 61 FRP 63


>gi|172040064|ref|YP_001799778.1| HTH family transcriptional regulator [Corynebacterium urealyticum
          DSM 7109]
 gi|171851368|emb|CAQ04344.1| putative transcriptional regulator (HTH_3 family)
          [Corynebacterium urealyticum DSM 7109]
          Length = 115

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           A L+Q+++  RTG +QS +  +  G+  + +  +I +A      + +L
Sbjct: 20 SAGLSQRDLAARTGLSQSTVHRILKGERNVKMPELIRIADATGCTVAQL 68


>gi|149918984|ref|ZP_01907469.1| hypothetical protein PPSIR1_21049 [Plesiocystis pacifica SIR-1]
 gi|149820137|gb|EDM79556.1| hypothetical protein PPSIR1_21049 [Plesiocystis pacifica SIR-1]
          Length = 75

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  +N   +  E  LT  ++  + G  +  +  +  G+   ++D + ++A  + T 
Sbjct: 5  PAYEVLASNLHRLSFEQNLTLDDVAAKVGITREHLEGICKGEIDPDLDLVSLIAEAVGTT 64

Query: 77 LWKLLK 82
            +LL 
Sbjct: 65 APELLT 70


>gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
 gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str.
          SLCC5334]
          Length = 115

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F     ++RK+ +LTQK++  + G   S IS+ E       I  +  LA  L T    LL
Sbjct: 3  FGEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLL 62


>gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii
          subsp. bulgaricus ATCC 11842]
 gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus
          delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 119

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 27/59 (45%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          E+ +     R++R+   ++Q+E+    G ++  IS  E G+    +  +  +A+     
Sbjct: 2  EKNMIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVS 60


>gi|55377330|ref|YP_135180.1| transcription regulator [Haloarcula marismortui ATCC 43049]
 gi|55230055|gb|AAV45474.1| transcription regulator [Haloarcula marismortui ATCC 43049]
          Length = 180

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + R  R E  LTQ E+  R   +Q  I+ +E G     +  +  +   L+
Sbjct: 7  QDLRERRNELGLTQSELAERADVSQPLIARIEGGDVDPRLSTLRRIVTALE 57


>gi|15900101|ref|NP_344705.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae TIGR4]
 gi|14971630|gb|AAK74345.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae
          TIGR4]
          Length = 288

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     +N RKE K++Q+E+    G   Q  IS LE+G+ T   D +  LA  L   +
Sbjct: 4  LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLNALAKKLKVSM 59


>gi|148265511|ref|YP_001232217.1| XRE family transcriptional regulator [Geobacter uraniireducens
          Rf4]
 gi|146399011|gb|ABQ27644.1| transcriptional regulator, XRE family [Geobacter uraniireducens
          Rf4]
          Length = 187

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              + +R+  KLT +++ N TGF+ + +S++E    +  I  +  +AH    
Sbjct: 7  GAKIKELRRAIKLTLQDVANETGFSTALLSQIENNNISPPIATLDKIAHFFGV 59


>gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
 gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str.
          Jelinkova 176]
          Length = 232

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +  + +R E + +Q E+ N     ++  ++ E+GKS  N  N+  LA  LD P
Sbjct: 4  GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVP 57


>gi|323486595|ref|ZP_08091916.1| cro/CI family Transcriptional regulator [Clostridium symbiosum
          WAL-14163]
 gi|323692262|ref|ZP_08106503.1| cro/CI family Transcriptional regulator [Clostridium symbiosum
          WAL-14673]
 gi|323399976|gb|EGA92353.1| cro/CI family Transcriptional regulator [Clostridium symbiosum
          WAL-14163]
 gi|323503677|gb|EGB19498.1| cro/CI family Transcriptional regulator [Clostridium symbiosum
          WAL-14673]
          Length = 106

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F      +R+   ++ +++    G    +I+++E GK+  +++    +   L        
Sbjct: 7  FGRRLSQLRERKGVSARDMSLSMGQNPGYINKVENGKAMPSMEVFFYICEFLAITPSDFF 66


>gi|317485171|ref|ZP_07944053.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
 gi|316923706|gb|EFV44910.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia
          3_1_6]
          Length = 86

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R  R  A L Q+++ +    ++  IS LE G+S  N+D +I LA        + L
Sbjct: 17 LRRYRDAAGLPQQQLADYAEVSKGSISALEGGRSVPNVDMLITLARAFGVRPGERL 72


>gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus
          parasanguinis ATCC 15912]
 gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus
          parasanguinis ATCC 15912]
          Length = 228

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +  RKE KLTQK+I ++ G +    S  E G    + + +  L   L+ P
Sbjct: 5  EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVP 57


>gi|296120081|ref|ZP_06838635.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295967235|gb|EFG80506.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 440

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 25/53 (47%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                +RK   LTQ E+  +   + S++++LE  +  + +  +I L+   + 
Sbjct: 7  GARIHALRKTYGLTQVEMAKQLDLSTSYLNQLENDQRPLTVTVLIQLSEAFNV 59


>gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus
          DSM 2522]
 gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus
          DSM 2522]
          Length = 70

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +R     +Q E+  R G  +  I  +E G  + +I   + LA  LD  + +L
Sbjct: 1  MLRNRVKELRARHGFSQTELAQRVGVTRQTIGFIEKGDFSPSIALSLRLAKHLDVRVDEL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|229164001|ref|ZP_04291939.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803]
 gi|228619472|gb|EEK76360.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803]
          Length = 73

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  R +R + +++Q ++    G ++  IS +E G    +I   + +AH  + P+ ++ 
Sbjct: 5  NRVRELRAKHRISQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEEIF 62


>gi|225855439|ref|YP_002736951.1| transcriptional activator [Streptococcus pneumoniae JJA]
 gi|225723117|gb|ACO18970.1| transcriptional activator [Streptococcus pneumoniae JJA]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|297204896|ref|ZP_06922293.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
 gi|197711669|gb|EDY55703.1| transcriptional regulator [Streptomyces sviceus ATCC 29083]
          Length = 135

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%)

Query: 8  EPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMI 67
           P  + A   E        +  R    ++Q+ + + TG  +S IS++E G+  ++   + 
Sbjct: 4  SPSDARARDPELTQLGERLKRTRDYLNMSQQFVSDNTGIPRSAISDIERGERRVDSLELK 63

Query: 68 ILAHTLDTP 76
           LA     P
Sbjct: 64 KLARLYRQP 72


>gi|167917954|ref|ZP_02505045.1| helix-turn-helix protein [Burkholderia pseudomallei BCC215]
          Length = 107

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDT 75
               R +RKE  LT +++    G ++S++ ELE  +S   + + +  LA  L  
Sbjct: 5  LGAKLRELRKEKGLTLEKLAELAGMSKSYVWELENRESQRPSAEKLTKLADVLGV 59


>gi|15901770|ref|NP_346374.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae TIGR4]
 gi|15903805|ref|NP_359355.1| transcriptional activator [Streptococcus pneumoniae R6]
 gi|116517204|ref|YP_817168.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae D39]
 gi|168484245|ref|ZP_02709197.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00]
 gi|221232674|ref|YP_002511828.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669]
 gi|14973451|gb|AAK76014.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae
          TIGR4]
 gi|15459444|gb|AAL00566.1| Transcriptional activator [Streptococcus pneumoniae R6]
 gi|116077780|gb|ABJ55500.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae D39]
 gi|172042485|gb|EDT50531.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00]
 gi|220675136|emb|CAR69719.1| putative transcriptional regulator [Streptococcus pneumoniae ATCC
          700669]
 gi|332199372|gb|EGJ13449.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA47368]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|332527576|ref|ZP_08403623.1| helix-turn-helix domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332111979|gb|EGJ11956.1| helix-turn-helix domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 18  ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQS-WISELETGKSTINIDNMIILAHTLDTP 76
           E+  +       R++A L+Q E  +R G++Q   +S +E+G+    +D ++       T 
Sbjct: 47  EKRAWGRRLAEAREDAGLSQTEAAHRLGYSQQVQLSLMESGQRMPPLDVLLACTQLYGTT 106

Query: 77  LWKL 80
           +  L
Sbjct: 107 MDFL 110


>gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK115]
          Length = 205

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK72]
          Length = 205

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 32/58 (55%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + +RK   ++Q+ + ++ G ++  +S+ E+ +S  ++D +I ++   +     LLK
Sbjct: 6  RIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDYLLK 63


>gi|317407455|gb|EFV87415.1| transcriptional regulator [Achromobacter xylosoxidans C54]
          Length = 202

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 30/63 (47%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          + +     R  RK  K+T +++   +G A S +S+ E G+  ++ +    LA  L   + 
Sbjct: 3  KEVMGARLRAERKARKMTLQDLSQASGIAVSTLSKAELGQIALSYEKFAALARALGIDMT 62

Query: 79 KLL 81
          ++ 
Sbjct: 63 RMF 65


>gi|315038028|ref|YP_004031596.1| HTH-type transcriptional regulator yqaF [Lactobacillus amylovorus
          GRL 1112]
 gi|325956480|ref|YP_004291892.1| HTH-type transcriptional regulator yqaF [Lactobacillus
          acidophilus 30SC]
 gi|312276161|gb|ADQ58801.1| HTH-type transcriptional regulator yqaF [Lactobacillus amylovorus
          GRL 1112]
 gi|325333045|gb|ADZ06953.1| HTH-type transcriptional regulator yqaF [Lactobacillus
          acidophilus 30SC]
 gi|327183308|gb|AEA31755.1| HTH-type transcriptional regulator yqaF [Lactobacillus amylovorus
          GRL 1118]
          Length = 78

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            + R  R  A LTQ E+      ++S+ S++E G   I+ D ++ L            K
Sbjct: 4  GKSLRETRLAAGLTQTEMAAGVA-SESFYSKVERGIHNIDADTLVKLLKARKINPVGFFK 62


>gi|310825514|ref|YP_003957872.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
 gi|309398586|gb|ADO76045.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1]
          Length = 131

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I     RN R  A LTQ+++  R G A      +E G+    ++N+  L   L     + 
Sbjct: 8  ILGTAARNARVRAGLTQEDVAERIGMASEVYGRMERGQMLPRVENLRRLCLVLKVSPHEF 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321]
 gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321]
          Length = 149

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R+E KL+QKE+    G     +   E G+S I  +    LA      +  LL
Sbjct: 2  NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAKQLADYFGVSVGYLL 59


>gi|304405777|ref|ZP_07387435.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304345020|gb|EFM10856.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 71

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          E        R  RK    TQ+++  R   + + +  LE G    +   +  +A TL    
Sbjct: 2  ENDQLAQRIRAFRKLKGFTQQQLAERLSVSVAVLGSLERGTRKPDPKLLANIAETLGIDY 61

Query: 78 WKLLK 82
           +L +
Sbjct: 62 DELTQ 66


>gi|264679065|ref|YP_003278972.1| XRE family transcriptional regulator [Comamonas testosteroni
          CNB-2]
 gi|262209578|gb|ACY33676.1| transcriptional regulator, XRE family [Comamonas testosteroni
          CNB-2]
          Length = 98

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              RK A++TQ ++  R G ++  +   ETG        +  +A  L+  L
Sbjct: 9  LAQARKAARITQADLAERAGLSRMAVQRTETGDVDPRFSTLQEMARVLNMEL 60


>gi|212709629|ref|ZP_03317757.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens
          DSM 30120]
 gi|212687733|gb|EEB47261.1| hypothetical protein PROVALCAL_00675 [Providencia alcalifaciens
          DSM 30120]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 1  MPRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST 60
          M ++   +   +DA+ R + IF       +KE  L+Q+ + +  G  QS +++L  G + 
Sbjct: 1  MKKKPITDEQKADAV-RLKAIFEAK----KKELGLSQESLGDAIGMGQSAVAQLLNGVNA 55

Query: 61 INIDNMIILAHTLDTPLWK 79
          IN++N + LA  L+  +  
Sbjct: 56 INVENAVKLAEALEVSVDD 74


>gi|167770470|ref|ZP_02442523.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM
          17241]
 gi|167667065|gb|EDS11195.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM
          17241]
          Length = 71

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MIF    + +R     +Q  I    G       + E G S   +  +I LA   D  L  
Sbjct: 1  MIFQKRLKELRNAKGTSQIAIAAALGITDRGYRKYEAGDSEPTLSVIIALADYFDVSLDY 60

Query: 80 L 80
          L
Sbjct: 61 L 61


>gi|218904463|ref|YP_002452297.1| DNA-binding protein [Bacillus cereus AH820]
 gi|229122857|ref|ZP_04252066.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201]
 gi|218535175|gb|ACK87573.1| DNA-binding protein [Bacillus cereus AH820]
 gi|228660721|gb|EEL16352.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|154504997|ref|ZP_02041735.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC
          29149]
 gi|153794880|gb|EDN77300.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC
          29149]
          Length = 147

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           + +R++  LTQ+++  R    +  +S  ETG++  N D + +L+   +  +  LL
Sbjct: 7  LKKLREKNSLTQEQMAKRVMVTRQAVSRWETGETQPNTDTLKLLSQEFEVSVNTLL 62


>gi|111225926|ref|YP_716720.1| hypothetical protein FRAAL6593 [Frankia alni ACN14a]
 gi|111153458|emb|CAJ65216.1| hypothetical protein FRAAL6593 [Frankia alni ACN14a]
          Length = 375

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
           D     R+        +R    +T + + +  G +QS IS++E G    N  ++  +A 
Sbjct: 25 PDGTPPARL--GVELAQLRHARAMTGQALASSVGISQSTISKIENGLLRPNPADVERIAR 82

Query: 72 TLDTPLWKLLK 82
          TL  P  +L++
Sbjct: 83 TLQAPP-ELVR 92


>gi|37912891|gb|AAR05227.1| predicted transcriptional regulators [uncultured marine
          proteobacterium ANT32C12]
          Length = 65

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          N  + +R + +L+Q  +      ++  ++ +E GK   ++   I L H  + PL K+  
Sbjct: 3  NRLKELRADRELSQSALAEILSVSRQTVNSIENGKFDPSLTLAIKLTHYFEMPLDKIFT 61


>gi|20090666|ref|NP_616741.1| hypothetical protein MA1815 [Methanosarcina acetivorans C2A]
 gi|19915714|gb|AAM05221.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 187

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
           + +  R E  LTQ ++  R G +Q  I+ +E+G     +  +  +    +
Sbjct: 7  EDLKKRRNELGLTQSDLAKRAGVSQPLIARIESGDVDPRLSTVRKILDAFE 57


>gi|28377773|ref|NP_784665.1| transcription regulator [Lactobacillus plantarum WCFS1]
 gi|28270606|emb|CAD63512.1| transcription regulator [Lactobacillus plantarum WCFS1]
          Length = 183

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 32/63 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          +++     +  R++ + +Q+ +  R   ++  IS+ E GKS  +++ ++ L+        
Sbjct: 2  KIVIGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFSVSTD 61

Query: 79 KLL 81
          +LL
Sbjct: 62 ELL 64


>gi|15612659|ref|NP_240962.1| hypothetical protein BH0096 [Bacillus halodurans C-125]
 gi|10172708|dbj|BAB03815.1| BH0096 [Bacillus halodurans C-125]
          Length = 73

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +    R  RK    TQ+      G + S + E+E G  T N   +  +   L+    +LL
Sbjct: 6  WGQRIRAFRKLKGYTQERFAQAIGVSVSVLGEVERGTRTPNRQLIERVVSVLNISEDELL 65


>gi|89895073|ref|YP_518560.1| hypothetical protein DSY2327 [Desulfitobacterium hafniense Y51]
 gi|219669485|ref|YP_002459920.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|89334521|dbj|BAE84116.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539745|gb|ACL21484.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 121

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R++  L Q++I    G  Q   S  E G+  +    +I LA   D     LL
Sbjct: 8  IRGLREDKDLRQRDIAEVIGTTQQHYSRCEQGECDLQTRAIIKLADFYDVSTDYLL 63


>gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
 gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248]
 gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066]
 gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North
          America USA6153]
 gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B]
 gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum]
 gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94]
 gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames]
 gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne]
 gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488]
 gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193]
 gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442]
 gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389]
 gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465]
 gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174]
 gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684]
 gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+E+    G  ++ +S+ ETG+S  +I  + +LA   +  + +L+
Sbjct: 14 RKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDELI 65


>gi|327401729|ref|YP_004342568.1| XRE family transcriptional regulator [Archaeoglobus veneficus
          SNP6]
 gi|327317237|gb|AEA47853.1| transcriptional regulator, XRE family [Archaeoglobus veneficus
          SNP6]
          Length = 68

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +  R    LTQ+E+  + G  +  I  +E GK   +++    +A      +  + 
Sbjct: 3  NKLKVYRAIHDLTQEELAKKLGVTRQTIIAIEKGKYDPSLELAFKIARFFKVKIEDIF 60


>gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
 gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus
          ATCC 51100]
          Length = 169

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            +    +RKE   +Q+ +  +   ++  IS+ E+G++   ++ ++ L+         LL
Sbjct: 4  LADKLFELRKEKGWSQERLAEQISVSRQSISKWESGQALPELEKIVELSKIFQVTTDYLL 63


>gi|303238242|ref|ZP_07324778.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
 gi|302594288|gb|EFL64000.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus
          CD2]
          Length = 67

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 27/58 (46%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  +++R+++  TQ+ + ++   ++  I  LE GK   +I     +A      +  + 
Sbjct: 3  NKIKDLREQSGFTQQYLADKVNVSRQTIISLENGKYNPSIFLAYKIAKVFKMTIEDIF 60


>gi|257483233|ref|ZP_05637274.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 96

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
                 + +R+   LTQK+       +  ++S+LE GK T ++  +  +   LD 
Sbjct: 5  EAVGLAVQTLRRHKGLTQKD--FLGAVSTQYLSDLECGKRTPSLVVLARICERLDV 58


>gi|256832269|ref|YP_003160996.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM
          20603]
 gi|256685800|gb|ACV08693.1| transcriptional regulator, XRE family [Jonesia denitrificans DSM
          20603]
          Length = 99

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R+    T +E+ +    +  ++SE+E G+   + + +  +   LDTPL 
Sbjct: 5  RREIGDVLRSARQRQGRTLREVSSAARVSLGYLSEVERGQKEASSELLGSICDALDTPLS 64

Query: 79 KLLK 82
           +L+
Sbjct: 65 LILR 68


>gi|238922410|ref|YP_002935924.1| hypothetical protein EUBELI_20646 [Eubacterium eligens ATCC
          27750]
 gi|238874082|gb|ACR73790.1| Hypothetical protein EUBELI_20646 [Eubacterium eligens ATCC
          27750]
          Length = 88

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   NN R I+++  + Q ++    G++   +  +E G ST + + M+ ++   +  +  
Sbjct: 23 MAVTNNIREIQEQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 82

Query: 80 LL 81
          + 
Sbjct: 83 VF 84


>gi|212691976|ref|ZP_03300104.1| hypothetical protein BACDOR_01471 [Bacteroides dorei DSM 17855]
 gi|212665368|gb|EEB25940.1| hypothetical protein BACDOR_01471 [Bacteroides dorei DSM 17855]
          Length = 128

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 23/44 (52%)

Query: 32  EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
           E  +TQ+ +  +    Q ++S++  G+  ++++ +  + + L  
Sbjct: 76  ELGMTQRVLAEKMNCTQQYVSKVLKGRENLSLETLCKIENALGI 119


>gi|295839125|ref|ZP_06826058.1| DNA-binding protein [Streptomyces sp. SPB74]
 gi|197695573|gb|EDY42506.1| DNA-binding protein [Streptomyces sp. SPB74]
          Length = 280

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          +S+     R+      R +R EA L  K +     + +S +S LE G+ T +  ++   A
Sbjct: 1  MSNDFQSARVALGARLRELRTEAGLDGKSLAELLAWQRSKVSRLENGRQTASRPDLEAWA 60

Query: 71 HTLDTP 76
            +  P
Sbjct: 61 QAVGQP 66


>gi|163841767|ref|YP_001626172.1| Cro/CI family transcriptional regulator [Renibacterium
          salmoninarum ATCC 33209]
 gi|162955243|gb|ABY24758.1| transcriptional regulator, Cro/CI family [Renibacterium
          salmoninarum ATCC 33209]
          Length = 79

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAK-LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N+ R +R     +TQ E+  R G  +  I  +E GK + +++    +A  L   L  + 
Sbjct: 9  NSIRGLRFSHGEMTQAELAERIGVTRQTIIAIEQGKYSPSLEVAFQIAGILQVRLEDVF 67


>gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC
          BAA-613]
          Length = 199

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
              + +RK   L Q ++ N  G +   + + ETG+  ++ID +  +A  LDT  
Sbjct: 10 GQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHLDTTP 64


>gi|158522991|ref|YP_001530861.1| helix-turn-helix domain-containing protein [Desulfococcus
          oleovorans Hxd3]
 gi|158511817|gb|ABW68784.1| helix-turn-helix domain protein [Desulfococcus oleovorans Hxd3]
          Length = 387

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 23/59 (38%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            N R +R++   T   +    G A+  +  +E G +  +   +  L+  L   +  L 
Sbjct: 12 GRNIRKLRRQRGWTISRLAGEIGMAEIPLGRIERGGNAPSAAVIFQLSRALGVSVDTLF 70


>gi|322392499|ref|ZP_08065959.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
 gi|321144491|gb|EFX39892.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
          Length = 99

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ +  N  + +R    L Q E+    G ++  IS LE  + T +I   + +A     P+
Sbjct: 30 KKDMLKNRLKELRARDGLNQTELAKLAGVSRQTISLLERDEYTPSIVIALKIAQIFHEPV 89

Query: 78 WKLLK 82
            + +
Sbjct: 90 ESVFR 94


>gi|331655815|ref|ZP_08356804.1| putative helix-turn-helix-containing protein [Escherichia coli
          M718]
 gi|331046589|gb|EGI18678.1| putative helix-turn-helix-containing protein [Escherichia coli
          M718]
          Length = 151

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   + R+ R++  +TQ +I +  G   +   ++E GKS+++++NM+     ++     L
Sbjct: 8  ILAFHIRDFREKYGVTQSDIASGLGITSAGWGKIENGKSSLSVENMMKFCKIINIDATIL 67

Query: 81 L 81
          L
Sbjct: 68 L 68


>gi|290956650|ref|YP_003487832.1| hypothetical protein SCAB_21541 [Streptomyces scabiei 87.22]
 gi|260646176|emb|CBG69269.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 465

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLDTPLWKL 80
          F    R IR    L Q ++   TG +Q+++S LE G   +  ID +I     L  P   +
Sbjct: 20 FGQASRLIRLRGSLRQGDMAQLTGLSQAFLSMLEAGTRRLTNIDKIIEFLTGLGVPAELV 79

Query: 81 LKP 83
            P
Sbjct: 80 PLP 82


>gi|260584837|ref|ZP_05852582.1| rgg/GadR/MutR family transcriptional activator [Granulicatella
          elegans ATCC 700633]
 gi|260157494|gb|EEW92565.1| rgg/GadR/MutR family transcriptional activator [Granulicatella
          elegans ATCC 700633]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
              + IRKE  LTQKE+      +++++S+ E G+S I  +  + L   L+  L +
Sbjct: 4  GEFIKKIRKEKHLTQKELAEGI-LSKNFLSKFERGESKITSEIFLNLLERLNVSLDE 59


>gi|256617058|ref|ZP_05473904.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ATCC 4200]
 gi|256596585|gb|EEU15761.1| helix-turn-helix domain-containing protein [Enterococcus faecalis
          ATCC 4200]
          Length = 87

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          +N    RKE  L+Q E+  +    Q  +S  +TG++      M +L+  L  P+ +L 
Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELF 78


>gi|225017731|ref|ZP_03706923.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum
          DSM 5476]
 gi|224949524|gb|EEG30733.1| hypothetical protein CLOSTMETH_01660 [Clostridium methylpentosum
          DSM 5476]
          Length = 70

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          MI  N+ + +R    L Q E+ +R   ++  IS +E G  + +I   + LA  L+ 
Sbjct: 1  MILKNHLKELRARHGLNQSELADRADVSRQTISLIERGNYSPSITLALTLARILEV 56


>gi|219666840|ref|YP_002457275.1| XRE family transcriptional regulator [Desulfitobacterium hafniense
           DCB-2]
 gi|219537100|gb|ACL18839.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense
           DCB-2]
          Length = 622

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 2   PRRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
           P R       S   L          +  R   KLTQ +     G AQ+ IS+LE+G+   
Sbjct: 551 PGRPPKSERTSLCSL------GEQLKKERLRKKLTQMQAAEDIGIAQTTISKLESGRRVP 604

Query: 62  NIDNMIILAHTLDT 75
           +      +   L  
Sbjct: 605 DFKTARKIQQWLKI 618


>gi|210611542|ref|ZP_03288946.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787]
 gi|210151943|gb|EEA82950.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787]
          Length = 194

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 32/60 (53%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              +  R++ K++Q+E+  +   ++  IS  ET KS  ++ ++I L++  +  L   +K
Sbjct: 4  GLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDNFIK 63


>gi|209551664|ref|YP_002283581.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv.
          trifolii WSM2304]
 gi|209537420|gb|ACI57355.1| transcriptional regulator, XRE family [Rhizobium leguminosarum
          bv. trifolii WSM2304]
          Length = 121

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R  R   +++Q E+    G     I + E G + ++   +  +A  LD  +  L
Sbjct: 8  IVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISAL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|154484771|ref|ZP_02027219.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC
          27560]
 gi|149734619|gb|EDM50536.1| hypothetical protein EUBVEN_02489 [Eubacterium ventriosum ATCC
          27560]
          Length = 70

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
              + I+     TQK + +      S IS +E GK  I++  ++ + + L T +  +LK
Sbjct: 10 GKKLKEIQTHKGFTQKFVASSVKVNTSHISNIENGKVKISLTTLVNVCNVLGTTVDYVLK 69


>gi|29376415|ref|NP_815569.1| Cro/CI family transcriptional regulator [Enterococcus faecalis
          V583]
 gi|227519230|ref|ZP_03949279.1| replication initiation protein [Enterococcus faecalis TX0104]
 gi|229545527|ref|ZP_04434252.1| replication initiation protein [Enterococcus faecalis TX1322]
 gi|255975566|ref|ZP_05426152.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256619367|ref|ZP_05476213.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256853409|ref|ZP_05558779.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256961616|ref|ZP_05565787.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256964832|ref|ZP_05569003.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257090178|ref|ZP_05584539.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|293384440|ref|ZP_06630320.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|293389181|ref|ZP_06633645.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|307272916|ref|ZP_07554163.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|307275669|ref|ZP_07556810.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|307295992|ref|ZP_07575824.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|312902671|ref|ZP_07761875.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|312908394|ref|ZP_07767357.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|312910535|ref|ZP_07769377.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|29343878|gb|AAO81639.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          V583]
 gi|227073317|gb|EEI11280.1| replication initiation protein [Enterococcus faecalis TX0104]
 gi|229309443|gb|EEN75430.1| replication initiation protein [Enterococcus faecalis TX1322]
 gi|255968438|gb|EET99060.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256598894|gb|EEU18070.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256711868|gb|EEU26906.1| transcriptional regulator [Enterococcus faecalis T8]
 gi|256952112|gb|EEU68744.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256955328|gb|EEU71960.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256998990|gb|EEU85510.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|291078223|gb|EFE15587.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          R712]
 gi|291081486|gb|EFE18449.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis
          S613]
 gi|306496323|gb|EFM65902.1| helix-turn-helix protein [Enterococcus faecalis TX0411]
 gi|306507774|gb|EFM76903.1| helix-turn-helix protein [Enterococcus faecalis TX2134]
 gi|306510530|gb|EFM79553.1| helix-turn-helix protein [Enterococcus faecalis TX0855]
 gi|310625614|gb|EFQ08897.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512]
 gi|310633725|gb|EFQ17008.1| helix-turn-helix protein [Enterococcus faecalis TX0635]
 gi|311289083|gb|EFQ67639.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516]
 gi|315028935|gb|EFT40867.1| helix-turn-helix protein [Enterococcus faecalis TX4000]
 gi|315033315|gb|EFT45247.1| helix-turn-helix protein [Enterococcus faecalis TX0017]
 gi|315143537|gb|EFT87553.1| helix-turn-helix protein [Enterococcus faecalis TX2141]
 gi|315161496|gb|EFU05513.1| helix-turn-helix protein [Enterococcus faecalis TX0645]
 gi|315576934|gb|EFU89125.1| helix-turn-helix protein [Enterococcus faecalis TX0630]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 30/59 (50%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          + +R +     ++ R E  ++Q ++    G ++ +++++E G  T +   M  + + L+
Sbjct: 1  MVQRNLDYRLLKDRRNEYGISQNKLATACGLSRPYLNQIENGGVTASTKTMRKIFNQLE 59


>gi|332076616|gb|EGI87078.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17545]
          Length = 288

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     +N RKE K++Q+E+    G   Q  IS LE+G+ T   D +  LA  L   +
Sbjct: 4  LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSM 59


>gi|330881145|gb|EGH15294.1| XRE family transcriptional regulator [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 125

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
              R +R E  LT + +    G     +S++E  +   ++D +  L+  L T   +L
Sbjct: 10 GAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSEL 67


>gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
 gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp.
          17-4]
          Length = 96

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N  + +RK   +T KE+  R   +  +IS +E   + +++  +  +   L   + +  
Sbjct: 4  GNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTKLSLKTLAHICDVLGVTISEFF 62


>gi|325925271|ref|ZP_08186675.1| Helix-turn-helix protein [Xanthomonas perforans 91-118]
 gi|325544317|gb|EGD15696.1| Helix-turn-helix protein [Xanthomonas perforans 91-118]
          Length = 78

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 28/50 (56%)

Query: 32 EAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++ +TQ ++ N  G  QS++S+ E+G+  +++  +  L   L   L+  +
Sbjct: 21 QSDMTQTDLANALGKPQSYVSKYESGERRLDLIELSDLCSVLGISLYDFV 70


>gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065]
          Length = 373

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 30 RKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          RKE  +TQ+++ N  G +++ +S+ E+G S  +I  +  LA   +  + +LL
Sbjct: 14 RKEKGITQEQLANYIGVSKASVSKWESGSSYPDILFLPELATYFNISVDELL 65


>gi|315640497|ref|ZP_07895605.1| DNA-binding protein [Enterococcus italicus DSM 15952]
 gi|315483701|gb|EFU74189.1| DNA-binding protein [Enterococcus italicus DSM 15952]
          Length = 194

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    +  R+    +Q+ +  +    +  IS+ E  K+  +I N+I L+   D  L +L+
Sbjct: 3  FSKQLKKYRELNGYSQEILAEKIYVTRQTISKWENDKTYPDIHNLIALSVLFDITLDELV 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|295398491|ref|ZP_06808526.1| XRE family transcriptional regulator [Aerococcus viridans ATCC
          11563]
 gi|294973271|gb|EFG49063.1| XRE family transcriptional regulator [Aerococcus viridans ATCC
          11563]
          Length = 92

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 28/55 (50%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +   NIRK   L+Q+E     G  QS I  +E+ +   ++D ++ +A+  +  L
Sbjct: 33 ADQIYNIRKNLGLSQREFAKLVGKPQSTIGRIESREVNASLDTIVSIANATNKKL 87


>gi|295699364|ref|YP_003607257.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438577|gb|ADG17746.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002]
          Length = 84

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                  R++A  TQ E   R G +QS IS LET  S + +  ++ L       L
Sbjct: 11 LAQLLAASRRQAGFTQTEAAARVGVSQSRISALETDASGLTLIQLLALCGAYGLQL 66


>gi|227357914|ref|ZP_03842260.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
 gi|227161887|gb|EEI46911.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906]
          Length = 94

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R+ RK   LT +++  +   +Q  +S  ET +S I+ + +++++  LD  +  LL
Sbjct: 21 LGKEIRSKRKAIGLTGEDLAKKLNVSQQQVSRYETAESKISFEKLLLISDVLDLNIQYLL 80

Query: 82 K 82
          K
Sbjct: 81 K 81


>gi|168701755|ref|ZP_02734032.1| hypothetical protein GobsU_19681 [Gemmata obscuriglobus UQM 2246]
          Length = 124

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TINIDNMIILAHTLDTPLW 78
            +  R+ A L+  ++  R+G  ++ +  LE G      +D +   A  +   L 
Sbjct: 61  LKKAREAAGLSLADVAERSGIDKAALGRLENGVHDNPTVDTLARYAAAIGKRLV 114


>gi|148988948|ref|ZP_01820348.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae SP6-BS73]
 gi|147925445|gb|EDK76522.1| phenylalanyl-tRNA synthetase subunit beta [Streptococcus
          pneumoniae SP6-BS73]
          Length = 70

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 34/59 (57%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          R+  ++     R E  ++QK++   +G +Q  I+ +ETG+S++ +D ++ +  +L   L
Sbjct: 2  RVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTL 60


>gi|332638410|ref|ZP_08417273.1| helix-turn-helix domain-containing protein [Weissella cibaria
          KACC 11862]
          Length = 182

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I       +R++ +LT +E+   TG + + ++ +E   ++ +ID +  ++  L  P+
Sbjct: 4  EIVGTRLLTLRQQRQLTLQEVSTLTGVSTASLNNIERHTTSPSIDTLWKISSGLAVPI 61


>gi|326390094|ref|ZP_08211656.1| Tetratricopeptide TPR_2 repeat-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
 gi|325993959|gb|EGD52389.1| Tetratricopeptide TPR_2 repeat-containing protein
          [Thermoanaerobacter ethanolicus JW 200]
          Length = 436

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L Q ++     F++ +IS +E GK + ++  +  +A  L+ P+   L
Sbjct: 6  LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64


>gi|312135656|ref|YP_004002994.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          owensensis OL]
 gi|311775707|gb|ADQ05194.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis
          OL]
          Length = 73

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
              +R++  LTQ ++    G   + +S++E G        +  LA+    P+ +L  P
Sbjct: 3  KLEFLRRQRGLTQTKLGFAIGVNPNLLSQIERGWRKPYPKLLQGLANYFGVPVEELANP 61


>gi|307264993|ref|ZP_07546554.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter
          wiegelii Rt8.B1]
 gi|306919978|gb|EFN50191.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter
          wiegelii Rt8.B1]
          Length = 436

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L Q ++     F++ +IS +E GK + ++  +  +A  L+ P+   L
Sbjct: 6  LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64


>gi|296156060|ref|ZP_06838899.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
 gi|295893566|gb|EFG73345.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 11 LSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILA 70
          L D    +R I     R +R E   +  ++   +  +++ +S LE    +     +  L 
Sbjct: 5  LPDDNAIDRRI-AQRLRALRAERNWSLDDLARLSSVSRATLSRLENAAVSPTASVLGKLC 63

Query: 71 HTLDTPLWKLL 81
               P+ +L+
Sbjct: 64 VAYGLPISRLM 74


>gi|288906350|ref|YP_003431572.1| transcriptional regulator PlcR family [Streptococcus gallolyticus
          UCN34]
 gi|306832393|ref|ZP_07465546.1| transcriptional regulator PlcR family protein [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|325979362|ref|YP_004289078.1| transcriptional regulator PlcR-like [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
 gi|288733076|emb|CBI14657.1| putative transcriptional regulator PlcR family [Streptococcus
          gallolyticus UCN34]
 gi|304425433|gb|EFM28552.1| transcriptional regulator PlcR family protein [Streptococcus
          gallolyticus subsp. gallolyticus TX20005]
 gi|325179290|emb|CBZ49334.1| transcriptional regulator PlcR-like [Streptococcus gallolyticus
          subsp. gallolyticus ATCC BAA-2069]
          Length = 286

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 26 FRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +  RKE  LTQKE+    G  AQ+ IS++E  ++T ++D    L   LD  +
Sbjct: 9  IKTKRKEKGLTQKELAE--GICAQAVISKIEKNETTPSVDLFFKLVKRLDIDM 59


>gi|254421718|ref|ZP_05035436.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
 gi|196189207|gb|EDX84171.1| Helix-turn-helix domain protein [Synechococcus sp. PCC 7335]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          F    +  R +   +Q ++   +  +Q  IS LE+G+S  + + ++ L+  LD PL +
Sbjct: 9  FGQLLKQWRSQRNFSQLDLSITSNVSQRHISFLESGRSKPSREMVLTLSTVLDIPLRQ 66


>gi|126735122|ref|ZP_01750868.1| DNA-binding protein, putative [Roseobacter sp. CCS2]
 gi|126715677|gb|EBA12542.1| DNA-binding protein, putative [Roseobacter sp. CCS2]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R +R   +LTQK    R G +  +++++E     ++   ++ LA      
Sbjct: 3  VQKLYAGAKLRELRGRLELTQKAFAERLGVSLPYLNQMENNNRPVSTAVVLGLAQEFGFD 62

Query: 77 LWKL 80
          + +L
Sbjct: 63 VTEL 66


>gi|119026382|ref|YP_910227.1| putative transcriptional regulator [Bifidobacterium adolescentis
          ATCC 15703]
 gi|118765966|dbj|BAF40145.1| putative transcriptional regulator [Bifidobacterium adolescentis
          ATCC 15703]
          Length = 164

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 23/33 (69%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETGKSTI 61
          +R +  +TQ+++ +  G +QS+IS++E G+  +
Sbjct: 30 MRVQRGMTQEQLADEMGVSQSYISQIENGRKKL 62


>gi|167039343|ref|YP_001662328.1| TPR repeat-containing protein [Thermoanaerobacter sp. X514]
 gi|256752343|ref|ZP_05493204.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300913983|ref|ZP_07131300.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp.
          X561]
 gi|307725334|ref|YP_003905085.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          sp. X513]
 gi|166853583|gb|ABY91992.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp.
          X514]
 gi|256748754|gb|EEU61797.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter
          ethanolicus CCSD1]
 gi|300890668|gb|EFK85813.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp.
          X561]
 gi|307582395|gb|ADN55794.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513]
          Length = 436

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L Q ++     F++ +IS +E GK + ++  +  +A  L+ P+   L
Sbjct: 6  LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64


>gi|167036674|ref|YP_001664252.1| TPR repeat-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|320115101|ref|YP_004185260.1| helix-turn-helix domain-containing protein [Thermoanaerobacter
          brockii subsp. finnii Ako-1]
 gi|166855508|gb|ABY93916.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|319928192|gb|ADV78877.1| helix-turn-helix domain protein [Thermoanaerobacter brockii
          subsp. finnii Ako-1]
          Length = 435

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R  RK   L Q ++     F++ +IS +E GK + ++  +  +A  L+ P+   L
Sbjct: 6  LGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYFL 64


>gi|329851805|ref|ZP_08266486.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
 gi|328839654|gb|EGF89227.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19]
          Length = 67

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             R +R E  LTQ ++  + G ++  +  LET K   ++D    ++   D P+  + +
Sbjct: 3  QYLRELRTEMGLTQADLAAKLGVSRQAVIALETDKHIPSLDLAYKISAVFDRPVESIFE 61


>gi|319900779|ref|YP_004160507.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
 gi|319415810|gb|ADV42921.1| transcriptional regulator [Bacteroides helcogenes P 36-108]
          Length = 191

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +++R+   ++ +++  R+G A   +  +E      ++  +I +A  L   L
Sbjct: 5  KIVGEKIKSLRESQSISMEDLAQRSGLAIEQVERIENNIDLPSLAPLIKIARVLGVRL 62


>gi|312134839|ref|YP_004002177.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor
          owensensis OL]
 gi|311774890|gb|ADQ04377.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis
          OL]
          Length = 84

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
            + IRK   L QKE+  +   +     + E GK  I ID  I +A  L+  + ++ 
Sbjct: 2  RLKEIRKMKNLKQKEVAEKLQISPQRYCQYENGKRKIPIDIAIKIAQILNMSMDEIF 58


>gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7]
 gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7]
          Length = 146

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R +R +  L+Q+E+  +    +  +S  E G +  N + + +L+   +  +  +L
Sbjct: 7  IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSVLFEVSINTIL 62


>gi|288559687|ref|YP_003423173.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
 gi|288542397|gb|ADC46281.1| transcriptional regulator [Methanobrevibacter ruminantium M1]
          Length = 67

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          NN +  R    +TQKE+ +  G ++  I  +E  K+  +++    +AH  D  +  + 
Sbjct: 3  NNLKIYRAIENITQKELADELGVSRQTIVLIENNKNDPSLELAFKIAHKFDVKIEDIF 60


>gi|255007620|ref|ZP_05279746.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12]
          Length = 93

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 23/58 (39%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 R  RK   + Q+ + +    + + I+++E G+  IN   +  +   L   L
Sbjct: 25 KQIGIQIRQRRKMLGINQQTLADLAQISINTITKIENGEININFQKLYAILEVLGLEL 82


>gi|255035160|ref|YP_003085781.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
 gi|254947916|gb|ACT92616.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM
          18053]
          Length = 189

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 25/62 (40%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++      + +R+   L+Q+ +          +  +E G +    + + +LA  LD  + 
Sbjct: 3  KLSISEQIKTLRRAKGLSQENLAESARINLRTLQRIEAGDTIPRGETLRLLAQVLDVRVE 62

Query: 79 KL 80
           L
Sbjct: 63 SL 64


>gi|225374973|ref|ZP_03752194.1| hypothetical protein ROSEINA2194_00596 [Roseburia inulinivorans
          DSM 16841]
 gi|225213163|gb|EEG95517.1| hypothetical protein ROSEINA2194_00596 [Roseburia inulinivorans
          DSM 16841]
          Length = 123

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          MI       I ++  ++Q E+  RTG A S IS+ +  K+    D ++ +   LD    +
Sbjct: 1  MIISERIFYIMEQKNMSQLELSRRTGIATSNISDWKKKKTNPKADCLLSICDALDITPEQ 60

Query: 80 LLK 82
          LL 
Sbjct: 61 LLT 63


>gi|218682257|ref|ZP_03529858.1| transcriptional regulator, XRE family protein [Rhizobium etli
          CIAT 894]
          Length = 119

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I   N R  R   +++Q E+    G     I + E G + ++   +  +A  LD  +  L
Sbjct: 8  IVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFLDVEISAL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|167770512|ref|ZP_02442565.1| hypothetical protein ANACOL_01857 [Anaerotruncus colihominis DSM
          17241]
 gi|167667107|gb|EDS11237.1| hypothetical protein ANACOL_01857 [Anaerotruncus colihominis DSM
          17241]
          Length = 89

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R+I   N    R    ++Q+E+  R   +    +++E  +   N+  +  L+        
Sbjct: 7  RVILACNLLEYRTINDISQEELAFRIKTSVKSYAKIERAEVHTNLKILDRLSQATGISTA 66

Query: 79 KLLKP 83
          +LL P
Sbjct: 67 QLLTP 71


>gi|148998484|ref|ZP_01825925.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP11-BS70]
 gi|168576644|ref|ZP_02722510.1| transcriptional activator [Streptococcus pneumoniae MLV-016]
 gi|307068564|ref|YP_003877530.1| putative transcriptional regulator [Streptococcus pneumoniae
          AP200]
 gi|147755677|gb|EDK62723.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP11-BS70]
 gi|183577638|gb|EDT98166.1| transcriptional activator [Streptococcus pneumoniae MLV-016]
 gi|306410101|gb|ADM85528.1| Predicted transcriptional regulator [Streptococcus pneumoniae
          AP200]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|152967978|ref|YP_001363762.1| XRE family transcriptional regulator [Kineococcus radiotolerans
           SRS30216]
 gi|151362495|gb|ABS05498.1| transcriptional regulator, XRE family [Kineococcus radiotolerans
           SRS30216]
          Length = 326

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKS-TI 61
           RR RD    +D  L  R+         R+ A L ++E+ +  G +  ++  LE G++   
Sbjct: 37  RRWRDRLSPADVGLPARVR--------RRAAGLRREELADLAGLSVDYVVRLEQGRATNP 88

Query: 62  NIDNMIILAHTLDTPLWK 79
           +   +  LA  L     +
Sbjct: 89  SAQVVATLARALQLSTVE 106


>gi|110632671|ref|YP_672879.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283655|gb|ABG61714.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1]
          Length = 474

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 25/64 (39%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           +++      R IR    LTQ  +    G + S+++ +E  +  +    ++ L       
Sbjct: 4  VQKVFAGARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVD 63

Query: 77 LWKL 80
            +L
Sbjct: 64 PDEL 67


>gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis
          SK1056]
          Length = 120

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +F    + +R EA LTQ ++  + G +Q   S  E G+     D    +A   +     L
Sbjct: 1  MFSERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTPDKYPKIAEFYNVSTDYL 60

Query: 81 L 81
          L
Sbjct: 61 L 61


>gi|322392306|ref|ZP_08065767.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
 gi|321144841|gb|EFX40241.1| XRE family transcriptional regulator [Streptococcus peroris ATCC
          700780]
          Length = 68

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 30/50 (60%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
            R+E  ++QK++   +G +Q  I+ +ETGK++  +D ++ +  +L   L
Sbjct: 9  EARREQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTL 58


>gi|309807064|ref|ZP_07701044.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          03V1-b]
 gi|325911652|ref|ZP_08174060.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
 gi|308166560|gb|EFO68759.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV
          03V1-b]
 gi|325476638|gb|EGC79796.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII
          143-D]
          Length = 227

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          ++IF       RK+  LT +E+  + G A S IS   +G+    I+ +  +A+  +T ++
Sbjct: 5  KIIFGQMIDYFRKQNNLTMEELGQKLGKATSSISRWVSGERYPKIEEIEQIANFFNTDIY 64

Query: 79 KLL 81
           L+
Sbjct: 65 TLI 67


>gi|262043414|ref|ZP_06016539.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259039240|gb|EEW40386.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 207

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M     F+  R E  +TQ E+ N  G +Q  I  +E+G++     N++ LA  L      
Sbjct: 1  MSLAARFKARRIELGMTQTEVANVAGVSQQSIESIESGRTRKP-RNVLELAKALKCSPDW 59

Query: 80 LL 81
          LL
Sbjct: 60 LL 61


>gi|255006786|ref|ZP_05145387.2| repressor-like protein [Staphylococcus aureus subsp. aureus
          Mu50-omega]
          Length = 238

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 4  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 57


>gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016]
 gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 108

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N    +RK  K++Q ++      A + I+++E G +  +ID +I +       L +  
Sbjct: 9  GNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSEFF 67


>gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC
          15579]
 gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC
          15579]
          Length = 384

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 33/59 (55%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N   + RKE  +TQ+++ +  G +++ +S+ E+G S  +I  +  +A   +  + +LL
Sbjct: 10 GNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPEIATYFNISVDELL 68


>gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC
          25827]
 gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC
          25827]
          Length = 95

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R IR +  LT  E+    G +Q  IS  E G  T+++ +   +   ++      +
Sbjct: 17 GEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERGYHTLSLSDFTFILSVMNVSFLDFI 75


>gi|160944429|ref|ZP_02091657.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium
          prausnitzii M21/2]
 gi|166033500|ref|ZP_02236329.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC
          27755]
 gi|260437651|ref|ZP_05791467.1| toxin-antitoxin system, antitoxin component, Xre family
          [Butyrivibrio crossotus DSM 2876]
 gi|261367918|ref|ZP_05980801.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|158444211|gb|EDP21215.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium
          prausnitzii M21/2]
 gi|166026685|gb|EDR45442.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC
          27755]
 gi|282570731|gb|EFB76266.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|292810006|gb|EFF69211.1| toxin-antitoxin system, antitoxin component, Xre family
          [Butyrivibrio crossotus DSM 2876]
 gi|295104413|emb|CBL01957.1| Predicted transcriptional regulators [Faecalibacterium
          prausnitzii SL3/3]
          Length = 65

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    +RK+  + Q+++ N    ++  I  LE G+   +I     +A   +  + ++ 
Sbjct: 3  NRLEELRKQRGIKQEDLANALEVSRQTIGSLENGRYNPSIQLAFKIARYFNMSIEEIF 60


>gi|148643210|ref|YP_001273723.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061]
 gi|222445441|ref|ZP_03607956.1| hypothetical protein METSMIALI_01079 [Methanobrevibacter smithii
          DSM 2375]
 gi|261349997|ref|ZP_05975414.1| putative transcriptional regulator [Methanobrevibacter smithii
          DSM 2374]
 gi|148552227|gb|ABQ87355.1| predicted transcriptional regulator [Methanobrevibacter smithii
          ATCC 35061]
 gi|222435006|gb|EEE42171.1| hypothetical protein METSMIALI_01079 [Methanobrevibacter smithii
          DSM 2375]
 gi|288860783|gb|EFC93081.1| putative transcriptional regulator [Methanobrevibacter smithii
          DSM 2374]
          Length = 67

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
            +  R E  L+Q+++ + TG  +  I+ LE  +   ++     +   LD  
Sbjct: 4  KIKEFRNEKGLSQQKLADLTGVTRQTINALENARYNPSLLLAFRITKILDKE 55


>gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185]
 gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           +  +  R+ RKE KLTQK +        S I++ E G ST    N+I L+  L+     
Sbjct: 25 EMIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEW 84

Query: 80 LL 81
          LL
Sbjct: 85 LL 86


>gi|109392229|ref|YP_655039.1| gp43 [Mycobacterium phage Llij]
 gi|88910330|gb|ABD58259.1| gp43 [Mycobacterium phage Llij]
          Length = 70

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
             R IR+    +  E+   +G +  ++S+LE G    N      LA  L  P+  L +P
Sbjct: 3  QELRVIRERTGWSSAELSRESGVSAPYLSQLENGDRWPNATVTKKLAVALKVPVSVLERP 62


>gi|76787698|ref|YP_330569.1| DNA-binding protein [Streptococcus agalactiae A909]
 gi|76562755|gb|ABA45339.1| DNA-binding protein [Streptococcus agalactiae A909]
          Length = 358

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N    R +  +TQ+ + +     ++ IS+ E  ++  +ID +I++A+  D  L  L
Sbjct: 1  MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|238797081|ref|ZP_04640584.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC
          43969]
 gi|238719126|gb|EEQ10939.1| hypothetical protein ymoll0001_2450 [Yersinia mollaretii ATCC
          43969]
          Length = 109

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 13 DAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGF----AQSWISELETGKSTINIDNMII 68
          ++  + R IF    ++ R    L+QK +    G     A + I+  E G    N+     
Sbjct: 2  NSEQQNRHIFSQRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANLVTAKH 61

Query: 69 LAHTLDTPL 77
          LA  L+ PL
Sbjct: 62 LAEALNIPL 70


>gi|77407989|ref|ZP_00784738.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
 gi|77173351|gb|EAO76471.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae COH1]
          Length = 358

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N    R +  +TQ+ + +     ++ IS+ E  ++  +ID +I++A+  D  L  L
Sbjct: 1  MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|25012032|ref|NP_736427.1| hypothetical protein gbs1994 [Streptococcus agalactiae NEM316]
 gi|77413860|ref|ZP_00790038.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
 gi|24413575|emb|CAD47653.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160100|gb|EAO71233.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 515]
          Length = 358

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N    R +  +TQ+ + +     ++ IS+ E  ++  +ID +I++A+  D  L  L
Sbjct: 1  MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|22538172|ref|NP_689023.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae
          2603V/R]
 gi|76798585|ref|ZP_00780814.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 18RS21]
 gi|22535081|gb|AAN00896.1|AE014283_15 transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 2603V/R]
 gi|76586050|gb|EAO62579.1| transcriptional regulator, Cro/CI family [Streptococcus
          agalactiae 18RS21]
          Length = 358

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N    R +  +TQ+ + +     ++ IS+ E  ++  +ID +I++A+  D  L  L
Sbjct: 1  MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60

Query: 81 L 81
          +
Sbjct: 61 V 61


>gi|327540144|gb|EGF26738.1| transcriptional regulator [Rhodopirellula baltica WH47]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPL 77
          M F    +  R+ A +TQK++   T    S I ELE+   +   +   M+ +A  +    
Sbjct: 1  MSFGTRLKWAREAAGMTQKQLSEATDIGISTICELESDGRERGPSALQMVKIADAVRRRP 60

Query: 78 WKLLKP 83
              +P
Sbjct: 61 DFFFEP 66


>gi|307709969|ref|ZP_07646416.1| transcriptional regulator [Streptococcus mitis SK564]
 gi|307619340|gb|EFN98469.1| transcriptional regulator [Streptococcus mitis SK564]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|268319338|ref|YP_003292994.1| hypothetical protein FI9785_855 [Lactobacillus johnsonii FI9785]
 gi|262397713|emb|CAX66727.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
          johnsonii FI9785]
          Length = 108

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELET-GKSTINIDNMIILAHTLDTPLWKL 80
               +  R+  ++TQ+++   +  + ++IS+++  G   I+I  +  +A  L T +  L
Sbjct: 12 LGAAIKKGRRSLRMTQEDLAEFSSLSVNFISKIKRTGNQNISIQKLDAIAKALQTSVITL 71

Query: 81 L 81
          +
Sbjct: 72 I 72


>gi|258651247|ref|YP_003200403.1| XRE family transcriptional regulator [Nakamurella multipartita
          DSM 44233]
 gi|258554472|gb|ACV77414.1| transcriptional regulator, XRE family [Nakamurella multipartita
          DSM 44233]
          Length = 309

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
              +RER +     R  R+ A+L  +E+   TG++ S +S +E G+  I   ++  L  
Sbjct: 4  DPPSVRERRL-AAELRRARQAAQLNGREVAALTGWSTSKVSRIENGRIGIGAADLDRLLE 62

Query: 72 TLDTPL 77
              P 
Sbjct: 63 LYQVPP 68


>gi|229073535|ref|ZP_04206660.1| Transcriptional regulator [Bacillus cereus F65185]
 gi|229194159|ref|ZP_04321018.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|228589300|gb|EEK47260.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
 gi|228709580|gb|EEL61629.1| Transcriptional regulator [Bacillus cereus F65185]
          Length = 73

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          ++ V+  +  R E  LTQ+ + +     +  IS +E+     +++  I  A TLD  L K
Sbjct: 8  LMSVSKVKFARVEKGLTQQGLVDIVNVTRHNISIIESNNYNPSLNLCIHTAKTLDKSLDK 67

Query: 80 LL 81
          L 
Sbjct: 68 LF 69


>gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC
          43243]
 gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC
          43243]
          Length = 268

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +R E  ++Q E+  +    +  +S  E G++  N + + +L+   +  +  LL
Sbjct: 16 QLRTERGMSQDELAEKIMVTRQAVSRWENGETIPNTETLKLLSKEFNVSINTLL 69


>gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              + +R   KLT + + N TGF+ + IS++E    +  I  +  +A   D  L +  
Sbjct: 8  GPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 66


>gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50]
 gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50]
          Length = 101

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             R +R+   +TQ  + +    ++S ++  + G S  +ID ++ LA         LL
Sbjct: 7  ERIRELREVIGITQSNLASALNISRSAVNAWKMGTSKPSIDTLVDLADFFHVSTDYLL 64


>gi|126736840|ref|ZP_01752575.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6]
 gi|126721425|gb|EBA18128.1| hypothetical protein RSK20926_10434 [Roseobacter sp. SK209-2-6]
          Length = 165

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
           R +R E   +Q+++    G +   +  +E G +  + + +  +A  L+    +L
Sbjct: 6  IRKLRLEKGYSQEQLAEMAGISTRTLQRIERG-ANASPETLKCIASVLEIDFSEL 59


>gi|55379381|ref|YP_137231.1| cell division control protein 21 [Haloarcula marismortui ATCC
           43049]
 gi|55232106|gb|AAV47525.1| cell division control protein 21 [Haloarcula marismortui ATCC
           43049]
          Length = 1175

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
                R IR+   LTQ E     G  +S     E G+   + D++  +    +T L ++
Sbjct: 681 LGPELRRIREALGLTQSE----CGLPRSTYQHYERGRRNPSRDSLESVLDAFETRLAEM 735


>gi|330719170|ref|ZP_08313770.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC
          3537]
          Length = 286

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +  + IRK   ++Q+++    G +QS +S +E  K+  +   +++L H L+    +  
Sbjct: 6  GSVIKEIRKLRGISQQQLGQLIG-SQSMVSRIENNKAEPSDHTLLLLCHALNISFDEYF 63


>gi|317050874|ref|YP_004111990.1| helix-turn-helix domain-containing protein [Desulfurispirillum
          indicum S5]
 gi|316945958|gb|ADU65434.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5]
          Length = 101

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                    + +RK   LTQ+E+    G  QS +S  E     + I+ +  L   LD  
Sbjct: 7  PTPEYLGKTLQALRKAKGLTQEELAKLAGVKQSTVSHAENNTRGMRIETLYSLLAALD-- 64

Query: 77 LWKLLKP 83
          L+  L+P
Sbjct: 65 LYLNLRP 71


>gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 184

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R EA L Q E+      +   IS +E G +  + + +   A     P   
Sbjct: 1  MTIGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTKPSTELVNRCAKYFGVPADY 60

Query: 80 LL 81
          LL
Sbjct: 61 LL 62


>gi|229553757|ref|ZP_04442482.1| transcription regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229312862|gb|EEN78835.1| transcription regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 324

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IRK   LT  ++ + T  + S++S++E G++ I +  ++ L   L+T   + L
Sbjct: 7  LRQIRKNKGLTLAQVADAT-ISSSYLSKVERGQNDITVTKLLHLLERLETTPEEFL 61


>gi|229002961|ref|ZP_04160828.1| transcriptional regulator [Bacillus mycoides Rock3-17]
 gi|228758312|gb|EEM07492.1| transcriptional regulator [Bacillus mycoides Rock3-17]
          Length = 119

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 26/56 (46%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          I     + IR     TQ++  +    ++  +S +E+GK T + + +  +++  +  
Sbjct: 4  IIGKRIKEIRMSLGYTQQQFADNVDISKPMVSYIESGKKTPSRETVSKISNLANVS 59


>gi|256829912|ref|YP_003158640.1| XRE family transcriptional regulator [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579088|gb|ACU90224.1| transcriptional regulator, XRE family [Desulfomicrobium baculatum
           DSM 4028]
          Length = 120

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 26  FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R    +TQ+++   TG A+  ISE+E  K  I   N   LA  L     + L
Sbjct: 63  LAGARHREGMTQEQLAKATGIARRHISEMENNKRPIGKLNARKLAAALHVDPRRFL 118


>gi|227545304|ref|ZP_03975353.1| XRE family transcriptional regulator [Lactobacillus reuteri
          CF48-3A]
 gi|227184700|gb|EEI64771.1| XRE family transcriptional regulator [Lactobacillus reuteri
          CF48-3A]
          Length = 201

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
           +  R +   TQ+++  R   ++  IS  E  +S  +I  ++ ++      L  LL+
Sbjct: 1  MKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLR 57


>gi|226940427|ref|YP_002795501.1| prophage repressor protein [Laribacter hongkongensis HLHK9]
 gi|226715354|gb|ACO74492.1| Putative prophage repressor protein [Laribacter hongkongensis
          HLHK9]
          Length = 233

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +RM      R  R  AKLTQ+++ +  G  ++ +S  E G+   +   M+ ++   +TPL
Sbjct: 34 QRMKINEWVRIARANAKLTQQQLADVLGCTKANVSAWENGRHEPSYMQMMSISALSNTPL 93


>gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002]
 gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002]
          Length = 324

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 22  FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
                 + R+   LTQ E+  R G +   I+ +E G       +++ +A  L   
Sbjct: 97  LGKRVTHARELKGLTQLELAKRVGVSAQTINFVENG-RNKGTKHLLAIAKALGVS 150


>gi|212715319|ref|ZP_03323447.1| hypothetical protein BIFCAT_00213 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661776|gb|EEB22351.1| hypothetical protein BIFCAT_00213 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 79

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 30/67 (44%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          ++ E+       R   +   +TQ+E+ +  G ++  +S    G     + ++  +A  L+
Sbjct: 4  VINEQQTIAKLVRRELRAKHMTQRELADEAGLSEQALSNKLRGLKNFTLRDVSRMADCLE 63

Query: 75 TPLWKLL 81
            + +LL
Sbjct: 64 VSVDELL 70


>gi|253702724|ref|YP_003023913.1| XRE family transcriptional regulator [Geobacter sp. M21]
 gi|251777574|gb|ACT20155.1| transcriptional regulator, XRE family [Geobacter sp. M21]
          Length = 307

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI--DNMIILAHTLDTPLWKL 80
              R +R+  +LTQ  + N  G     IS  E      +I  +N   LA  L+ PL  +
Sbjct: 20 GTRIRTVREAKRLTQLYVANVVGVTTDTISRWEN-NRYPSIKRENAQKLADALEVPLVDI 78

Query: 81 LK 82
          L+
Sbjct: 79 LR 80


>gi|168210926|ref|ZP_02636551.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|209947633|ref|YP_002291140.1| putative LexA repressor [Clostridium perfringens]
 gi|170711066|gb|EDT23248.1| LexA repressor [Clostridium perfringens B str. ATCC 3626]
 gi|209910424|dbj|BAG75513.1| putative LexA repressor [Clostridium perfringens]
          Length = 379

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ RK+ K++Q++   +   A+S +S  E  KS   I  ++ ++  ++  + +LL
Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69


>gi|167561623|ref|ZP_02354539.1| DNA-binding protein [Burkholderia oklahomensis EO147]
 gi|167568859|ref|ZP_02361733.1| DNA-binding protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 31/62 (50%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +   N   +R E +L+   +   +G +++ ++++E+ +S  +I  +  +A  L   +   
Sbjct: 29 LVGVNLARLRAERQLSLDALARLSGVSRAMLAQIESARSVPSIKVLCKVAAALKVSVAAF 88

Query: 81 LK 82
          L+
Sbjct: 89 LR 90


>gi|148993187|ref|ZP_01822753.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP9-BS68]
 gi|147928161|gb|EDK79179.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP9-BS68]
 gi|332072036|gb|EGI82523.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA17570]
          Length = 215

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus
          thermodenitrificans NG80-2]
 gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
 gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus
          thermodenitrificans NG80-2]
 gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16]
          Length = 137

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 29/60 (48%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               + +RK+ + TQ+++  +   ++S IS+ E G +  +I ++  L    +     L+
Sbjct: 5  LGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGSTLPDIQSLEKLCRLFNVSADFLI 64


>gi|38257088|ref|NP_940750.1| hypothetical protein pPI-1p01 [Staphylococcus warneri]
 gi|38142381|dbj|BAD00985.1| hypothetical protein [Staphylococcus warneri]
          Length = 203

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +    +RK+  LTQ+ +  +       I  +E G+  ++ + +  +++ LD  + +L +
Sbjct: 4  SKIAKLRKDKSLTQENLAEKACVTVRTIQRIEAGEE-VSSETLKNISNVLDVTINELFE 61


>gi|67924432|ref|ZP_00517858.1| Helix-turn-helix motif:4Fe-4S ferredoxin, iron-sulfur binding
           [Crocosphaera watsonii WH 8501]
 gi|67853721|gb|EAM49054.1| Helix-turn-helix motif:4Fe-4S ferredoxin, iron-sulfur binding
           [Crocosphaera watsonii WH 8501]
          Length = 533

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 3   RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK 58
           ++++++         E         + RK   L+Q+ +    G +QSWI +LE G+
Sbjct: 462 KQRKNQRKTRTKKPPE--FSAQQILDARKRKGLSQRALAKEIGKSQSWIRDLENGR 515


>gi|327389117|gb|EGE87463.1| helix-turn-helix family protein [Streptococcus pneumoniae
          GA04375]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|322830833|ref|YP_004210860.1| mobile mystery protein A [Rahnella sp. Y9602]
 gi|321166034|gb|ADW71733.1| mobile mystery protein A [Rahnella sp. Y9602]
          Length = 155

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 29 IRKEAKLTQKEIRNRTGFAQSWISELETG--KSTINIDNMIILAHTLDTPLWKLLKP 83
          +R    ++ + +  R G +QS IS +E G  + ++ ++ +  +A  LD  L   L+P
Sbjct: 35 LRSALGMSTRSLAERCGLSQSRISLIEKGEIEGSLTLNTLEKIAEGLDCELVYFLQP 91


>gi|288928743|ref|ZP_06422589.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329727|gb|EFC68312.1| toxin-antitoxin system, antitoxin component, Xre family
          [Prevotella sp. oral taxon 317 str. F0108]
          Length = 104

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 3  RRKRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN 62
           +  D             +     +  R + KLTQ ++    G  ++ +S +E G   + 
Sbjct: 18 GKPGDLAREQYESDINAFLIGETIKKARLQRKLTQAQLGELMGVKRAQVSRIE-GGRNLT 76

Query: 63 IDNMIILAHTLDT 75
             +      +  
Sbjct: 77 FATLSRAFKAMGV 89


>gi|251791287|ref|YP_003006008.1| XRE family transcriptional regulator [Dickeya zeae Ech1591]
 gi|247539908|gb|ACT08529.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591]
          Length = 195

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 8  EPHLSDA---ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          EPH S+       +R +       +R+E   +  E+   +G +++ +S LE  +S+    
Sbjct: 2  EPHFSETARLSETDRRL-AERLAALRRERGWSLDELSQSSGISRATLSRLERMESSPTAV 60

Query: 65 NMIILAHTLDTPLWKLL 81
           +  L       +  LL
Sbjct: 61 LLGRLCAVYGCTMSSLL 77


>gi|229099483|ref|ZP_04230412.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29]
 gi|228683979|gb|EEL37928.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29]
          Length = 79

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|229119044|ref|ZP_04248386.1| hypothetical protein bcere0017_53050 [Bacillus cereus Rock1-3]
 gi|228664435|gb|EEL19934.1| hypothetical protein bcere0017_53050 [Bacillus cereus Rock1-3]
          Length = 51

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          ++Q+++ N+ G  +  I  LE GK   +      +A  L+ P+  L 
Sbjct: 1  MSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLF 47


>gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03]
 gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03]
          Length = 95

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 30/61 (49%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
                ++RK+  L+Q+ +  +   ++  +S+ E+ +S  +I+ ++ L+         LL
Sbjct: 3  LGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDYLL 62

Query: 82 K 82
          K
Sbjct: 63 K 63


>gi|254500038|ref|ZP_05112191.1| hypothetical protein SADFL11_76 [Labrenzia alexandrii DFL-11]
 gi|222441505|gb|EEE48182.1| hypothetical protein SADFL11_76 [Labrenzia alexandrii DFL-11]
          Length = 49

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 35 LTQKEIRNRTGFAQSWISELETGKSTINIDNMII 68
          +TQKEI   +G +Q ++S LE GK    +   I 
Sbjct: 1  MTQKEIAAISGISQQYLSSLERGKLNPTVIASIR 34


>gi|222055943|ref|YP_002538305.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
 gi|221565232|gb|ACM21204.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32]
          Length = 130

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 17  RERMIFVNN-FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            +R++   N  R  R+  +L+  ++    G   + IS++E+GK   ++  +  +A TL  
Sbjct: 56  VDRLLDGENPIRVWREYRRLSAADLAKACGVTAAAISQIESGKRKSSVTLLHKIARTLKV 115

Query: 76  PLWKLL 81
            L  L+
Sbjct: 116 DLEMLI 121


>gi|197105920|ref|YP_002131297.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
 gi|196479340|gb|ACG78868.1| predicted transcriptional regulator [Phenylobacterium zucineum
          HLK1]
          Length = 93

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
            R++A L+Q+ +  R     S ++ +E G+  +++     +A  +  P   L++
Sbjct: 15 EARRQAGLSQRALAARLEKTGSHVAMIERGQRRVDLLEFCRMADCMGLPAEVLVR 69


>gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC
          29799]
 gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC
          29799]
          Length = 157

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M   ++  + RK++ L+Q+ +  + G ++  IS+ ET ++  +I     LA   +  L +
Sbjct: 9  MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYNMTLDE 68

Query: 80 LLK 82
          L++
Sbjct: 69 LIE 71


>gi|149012465|ref|ZP_01833496.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP19-BS75]
 gi|147763521|gb|EDK70457.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae SP19-BS75]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
              FR  RKE +L+Q+ +    G   QS IS++E G    + D +  L+  L+ PL
Sbjct: 4  LAEKFRLKRKELRLSQQTLAE--GICEQSQISKIERGHFIPSADLLFKLSQRLEVPL 58


>gi|84501835|ref|ZP_00999993.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597]
 gi|84389830|gb|EAQ02464.1| hypothetical protein OB2597_17147 [Oceanicola batsensis HTCC2597]
          Length = 85

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
            RK A LTQ E+  R    QS+++ LE+G+  +++  +I+LA  L  
Sbjct: 19 AARKAAGLTQAELALRLRCHQSFVARLESGERRVDVVELIVLARALQI 66


>gi|322373236|ref|ZP_08047772.1| putative transcriptional regulator [Streptococcus sp. C150]
 gi|321278278|gb|EFX55347.1| putative transcriptional regulator [Streptococcus sp. C150]
          Length = 69

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N  + +R    L Q E+    G ++  IS LE G+ T ++   I +A     P+  + 
Sbjct: 5  NRLKELRARDGLNQSELAKLAGVSRQSISLLERGEYTPSVIIAITIAQIFKEPVENVF 62


>gi|312901966|ref|ZP_07761228.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
 gi|311290902|gb|EFQ69458.1| helix-turn-helix protein [Enterococcus faecalis TX0470]
          Length = 69

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           N R+IR++  +TQ+++      +Q+  S+ ETGK       +I +A   D  +  LL
Sbjct: 4  KNIRSIREDNDVTQQQMAELLNVSQNTYSQYETGKIEWTASTLIKVADYFDVSVDYLL 61


>gi|300856338|ref|YP_003781322.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
 gi|300436453|gb|ADK16220.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
          13528]
          Length = 128

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R+E  +T + +       +S +S  E    T N+D +  LA   +  +  LL
Sbjct: 4  FTQRMKELRREKNITLENLAKALNTTKSTLSRYENNLRTPNVDFINQLAKYFNVSVDYLL 63


>gi|255323925|ref|ZP_05365051.1| putative DNA-binding protein [Corynebacterium tuberculostearicum
          SK141]
 gi|255299105|gb|EET78396.1| putative DNA-binding protein [Corynebacterium tuberculostearicum
          SK141]
          Length = 118

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 33 AKLTQKEIRNRTGFAQSWISELET------GKSTINIDNMIILAHTLDTPLWKLL 81
            ++Q+ +   +G ++S IS LE         +   +  +  LA  L+ P   LL
Sbjct: 20 RGISQQALAEISGVSRSQISNLERNENGVHAMADPQLSTVYKLALALEIPPAVLL 74


>gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis
          alpha14]
 gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis
          alpha14]
 gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153]
 gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275]
          Length = 126

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A   +R+I     R  RKE   + +++      +Q  IS  E G   INI +++ +A  L
Sbjct: 15 ATEADRLI-GEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFL 73

Query: 74 DTPL 77
          +TP+
Sbjct: 74 ETPI 77


>gi|237808624|ref|YP_002893064.1| transcriptional regulator, XRE family [Tolumonas auensis DSM
          9187]
 gi|237500885|gb|ACQ93478.1| transcriptional regulator, XRE family [Tolumonas auensis DSM
          9187]
          Length = 93

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
                 RK    TQ +   R   A+  IS +E G+ T ++ +++     L   L
Sbjct: 19 GKQCAEQRKAKGWTQADAAIRANLARPVISMIERGRFTGSLKSLVAYLSVLGLEL 73


>gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC
          43949]
 gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC
          43949]
 gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica
          subsp. asymbiotica ATCC 43949]
 gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica]
 gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica]
          Length = 133

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+   L+Q  +    G      +  E G S  +++ +I +A  L   + +L+
Sbjct: 16 FAERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGASAPHLETVIKIADVLQVTIDELV 75


>gi|150009363|ref|YP_001304106.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|255016216|ref|ZP_05288342.1| transcriptional regulator [Bacteroides sp. 2_1_7]
 gi|256842368|ref|ZP_05547871.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262384722|ref|ZP_06077855.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|298377851|ref|ZP_06987801.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|301312270|ref|ZP_07218187.1| DNA-binding protein [Bacteroides sp. 20_3]
 gi|149937787|gb|ABR44484.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503]
 gi|256735975|gb|EEU49306.1| transcriptional regulator [Parabacteroides sp. D13]
 gi|262293703|gb|EEY81638.1| transcriptional regulator [Bacteroides sp. 2_1_33B]
 gi|298265297|gb|EFI06960.1| DNA-binding protein [Bacteroides sp. 3_1_19]
 gi|300829692|gb|EFK60345.1| DNA-binding protein [Bacteroides sp. 20_3]
          Length = 193

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           I     +NIR+  +L+ +E+  R+G     I  +E      ++  +I +A  L   L
Sbjct: 5  KIIGAKIKNIRESKQLSIEEVAERSGLGIEQIERIEGNLDFPSLAPLIKIARVLGVRL 62


>gi|170721030|ref|YP_001748718.1| XRE family transcriptional regulator [Pseudomonas putida W619]
 gi|169759033|gb|ACA72349.1| transcriptional regulator, XRE family [Pseudomonas putida W619]
          Length = 183

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
           R +RK   LT  E+  +   +  ++S++E G S   + ++  ++  L  P
Sbjct: 12 IRGLRKHRGLTLGELAIKVKRSLGFLSQVERGLSQPTVADLTAISEALHVP 62


>gi|325926434|ref|ZP_08187757.1| putative transcription factor, MBF1 like protein [Xanthomonas
          perforans 91-118]
 gi|325543177|gb|EGD14617.1| putative transcription factor, MBF1 like protein [Xanthomonas
          perforans 91-118]
          Length = 134

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQ-----SWISELETGKST 60
          R    +         ++    R+ R     TQ E+  R G        + +S  ETG+  
Sbjct: 16 RAIFSMPKPKTPA-TVYGTRLRHARMAMGWTQAELAERIGMVDNVSGATRVSRYETGQHD 74

Query: 61 INIDNMIILAHTLDTP 76
           +      LA  L  P
Sbjct: 75 PDPATAEALAKALKLP 90


>gi|325833594|ref|ZP_08166043.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|325485518|gb|EGC87987.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
          Length = 101

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 6  RDEPHLSDAILRERMI--FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINI 63
          ++E       L +R+     +    +R    L+Q  +    G     IS LE G   + +
Sbjct: 3  KNEKMARKDPLVQRLSADLGSRLLEVRTSEGLSQTTLAEMVGTKHPRISNLEGGLVDVRL 62

Query: 64 DNMIILAHTLDTPLWKLL 81
           +++ LA  LD    +LL
Sbjct: 63 SDIVKLARALDVNPGELL 80


>gi|315038439|ref|YP_004032007.1| transcriptional regulator, XRE family protein [Lactobacillus
          amylovorus GRL 1112]
 gi|325956850|ref|YP_004292262.1| XRE family transcriptional regulator [Lactobacillus acidophilus
          30SC]
 gi|312276572|gb|ADQ59212.1| Transcriptional regulator, XRE family protein [Lactobacillus
          amylovorus GRL 1112]
 gi|325333415|gb|ADZ07323.1| transcriptional regulator, XRE family protein [Lactobacillus
          acidophilus 30SC]
 gi|327183636|gb|AEA32083.1| XRE family transcriptional regulator [Lactobacillus amylovorus
          GRL 1118]
          Length = 117

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGK-STINIDNMIILAHTLDTPLWKL 80
                  R+E KLTQ+++   +  + ++IS LE  K   I+I  +  +A  L+T    +
Sbjct: 5  LGEEISRRRREQKLTQEDLAELSDLSVNFISRLERTKDQNISIQKLDSIARALNTTTPDI 64

Query: 81 L 81
          +
Sbjct: 65 I 65


>gi|311030669|ref|ZP_07708759.1| YazB [Bacillus sp. m3-13]
          Length = 71

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          +  N  + +R     +Q ++ +  G  +  I  +E G+ + +I   + LA  L   + +L
Sbjct: 1  MLCNRVKELRARHGFSQSDLGSLVGVTRQTIGFIEKGEFSPSIALSLRLAKHLKVKVDEL 60

Query: 81 L 81
           
Sbjct: 61 F 61


>gi|304404381|ref|ZP_07386042.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
 gi|304346188|gb|EFM12021.1| transcriptional regulator, XRE family [Paenibacillus
          curdlanolyticus YK9]
          Length = 109

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          M   +  R +R    L+Q+E+  + G  +S  S  E        D +I L+   +  L
Sbjct: 3  MTMGDRLRELRLRKNLSQEEVAKQIGITRSAYSHYEINNRQPVYDTLIKLSSYFEVSL 60


>gi|302542772|ref|ZP_07295114.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces hygroscopicus ATCC 53653]
 gi|302460390|gb|EFL23483.1| xre family toxin-antitoxin system, antitoxin component
          [Streptomyces himastatinicus ATCC 53653]
          Length = 308

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
          ++   R+R  F    R +R+ A LT  E     G     +S +E G++++  + + +L  
Sbjct: 17 ANPTYRQRR-FGAEVRRLRERAGLTVGEAARLMGMHSPHLSNVEAGRTSLAAERLGVLTQ 75

Query: 72 TLD 74
           L+
Sbjct: 76 ALE 78


>gi|302335294|ref|YP_003800501.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
 gi|301319134|gb|ADK67621.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084]
          Length = 136

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 12 SDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAH 71
            +   ER +  NN R +R +  L+Q ++  + G +    S  ETG++ +  + +  L  
Sbjct: 20 PRSTQGERAVHENNLRYLRDKVGLSQVQVAAQLGVSSKTYSSWETGRTELGAERIRALCD 79

Query: 72 TLDTPLWKLL 81
           L      +L
Sbjct: 80 LLGCTPNDVL 89


>gi|296394319|ref|YP_003659203.1| XRE family transcriptional regulator [Segniliparus rotundus DSM
          44985]
 gi|296181466|gb|ADG98372.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM
          44985]
          Length = 471

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
              R +R E  L+Q  +      + S+++++E     + +  ++ L+ TL  
Sbjct: 7  GPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPLTVPLLVRLSETLGV 59


>gi|282866393|ref|ZP_06275438.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
 gi|282558789|gb|EFB64346.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE]
          Length = 406

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 16 LRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTIN-IDNMIILAHTLD 74
          + E +         R+   L+Q+ + +  G    W+S+ E  +  ++ +  +  LA  LD
Sbjct: 1  MTENLTIGERVAWYRRRRGLSQEVLADLVGRTTDWLSKAENNRIELDRLSVITSLAEALD 60

Query: 75 TPLWKLL 81
            L  LL
Sbjct: 61 VSLGDLL 67


>gi|258538914|ref|YP_003173413.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705]
 gi|257150590|emb|CAR89562.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705]
          Length = 324

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           R IRK   LT  ++ + T  + S++S++E G++ I +  ++ L   L+T   + L
Sbjct: 7  LRQIRKNKGLTLAQVADAT-ISSSYLSKVERGQNDITVTKLLHLLERLETTPEEFL 61


>gi|271963921|ref|YP_003338117.1| XRE family transcriptional regulator [Streptosporangium roseum
          DSM 43021]
 gi|270507096|gb|ACZ85374.1| putative transcriptional regulator, XRE family [Streptosporangium
          roseum DSM 43021]
          Length = 110

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 5  KRDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINID 64
          +R     +    RE  +       +RK A +TQ E+    G  Q+ IS++E G+ +  ID
Sbjct: 25 ERAVGQEAARQRREAYVRGYQLAEMRKAAGITQVELAEALGVTQARISKIENGEVSG-ID 83

Query: 65 NMIILAHTLD 74
           +      L 
Sbjct: 84 VVRAYVTALG 93


>gi|237737130|ref|ZP_04567611.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229420992|gb|EEO36039.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 181

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F +  +  RK+  +TQ+E+      ++  I++ E+ +S   I  +I L++  D  +  LL
Sbjct: 21 FGDKIQLQRKKKGMTQEELGEELNVSRQTITKWESNQSFPEIKKIIKLSYFFDVTIDYLL 80

Query: 82 K 82
          K
Sbjct: 81 K 81


>gi|229105641|ref|ZP_04236274.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28]
 gi|229118501|ref|ZP_04247855.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3]
 gi|228665071|gb|EEL20559.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3]
 gi|228677777|gb|EEL32021.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28]
          Length = 79

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 17 RERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
          RE M   N  R +R + +L+Q ++    G ++  IS +E G    +I   + +A   + P
Sbjct: 4  REDMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVP 63

Query: 77 LWKLLK 82
          + ++  
Sbjct: 64 VEEIFT 69


>gi|219667497|ref|YP_002457932.1| XRE family transcriptional regulator [Desulfitobacterium
          hafniense DCB-2]
 gi|219537757|gb|ACL19496.1| transcriptional regulator, XRE family [Desulfitobacterium
          hafniense DCB-2]
          Length = 103

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 28 NIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLKP 83
            RKE  +TQ E+ +  G  Q+ I+ +E   +   +  +  +   L   L  +  P
Sbjct: 37 AARKEKGITQAELDSLCGVKQTHIARIENNNTDPQLSTIFKILRPLGKTLAVVDIP 92


>gi|110640145|ref|YP_680355.1| XRE family transcriptional regulator [Cytophaga hutchinsonii ATCC
          33406]
 gi|110282826|gb|ABG61012.1| transcriptional regulator, XRE family [Cytophaga hutchinsonii
          ATCC 33406]
          Length = 122

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 10 HLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIIL 69
           LSD  + E++      + +R +  LTQ+E+ NR+G  +S ISE+E G+   ++ ++I L
Sbjct: 18 VLSDTAIIEQL--GKELKRMRLKNNLTQQELANRSGLFRSTISEIENGRV-GSLLSLIQL 74

Query: 70 AHTLDT 75
             LD 
Sbjct: 75 LRALDK 80


>gi|49478976|ref|YP_039343.1| transcription activator [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|52140212|ref|YP_086619.1| transcriptional activator [Bacillus cereus E33L]
 gi|49330532|gb|AAT61178.1| transcription activator [Bacillus thuringiensis serovar konkukian
          str. 97-27]
 gi|51973681|gb|AAU15231.1| transcriptional activator [Bacillus cereus E33L]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
 gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum
          SCRI1043]
          Length = 132

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    R +R+   L+Q  +    G      +  E G S  +++ ++ +A  L   + +L+
Sbjct: 16 FAERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVSAPHLETVVNIADVLQVSMDELV 75


>gi|330824754|ref|YP_004388057.1| helix-turn-helix domain-containing protein [Alicycliphilus
          denitrificans K601]
 gi|329310126|gb|AEB84541.1| helix-turn-helix domain protein [Alicycliphilus denitrificans
          K601]
          Length = 97

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
           +       + IRK   L+Q+   + +  +++++S LE    +  ++ +  L   ++   
Sbjct: 3  AKHTLSEALKTIRKARGLSQEAFSDVS--SRTYMSSLERDLKSPTLNKLAELCEVMEVHP 60

Query: 78 WKLLK 82
            LL 
Sbjct: 61 LTLLT 65


>gi|315659344|ref|ZP_07912208.1| conserved hypothetical protein [Staphylococcus lugdunensis
          M23590]
 gi|315495769|gb|EFU84100.1| conserved hypothetical protein [Staphylococcus lugdunensis
          M23590]
          Length = 112

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               +  RKE  LTQ ++       +  +S+ E G    N   ++ LA   D    +LL
Sbjct: 3  LAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFDITTDELL 62

Query: 82 K 82
           
Sbjct: 63 T 63


>gi|290131506|gb|ADD23348.1| PlcR [Bacillus sp. RS1045]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|260172935|ref|ZP_05759347.1| Cro/CI family transcriptional regulator [Bacteroides sp. D2]
 gi|315921217|ref|ZP_07917457.1| predicted protein [Bacteroides sp. D2]
 gi|313695092|gb|EFS31927.1| predicted protein [Bacteroides sp. D2]
          Length = 74

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 29/59 (49%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
              R +R+   L+ +E  ++     + +  +E G++   I  ++ +A+TL+  L  ++
Sbjct: 16 GTRIRRLRESKNLSIQEFADKLEIEYNNVIRIEKGRTNFTIGTLVKIANTLEVNLKDIV 74


>gi|238062483|ref|ZP_04607192.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
 gi|237884294|gb|EEP73122.1| XRE family transcriptional regulator [Micromonospora sp. ATCC
          39149]
          Length = 193

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 38 KEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
          +E+    G +  ++SE+E G+   + + +  +   L   L  LL+
Sbjct: 2  REVAEAAGVSLPYLSEVERGRKEASSEVLAAICRALGIGLSDLLE 46


>gi|229020571|ref|ZP_04177313.1| hypothetical protein bcere0030_50500 [Bacillus cereus AH1273]
 gi|229026789|ref|ZP_04183121.1| hypothetical protein bcere0029_50560 [Bacillus cereus AH1272]
 gi|228734512|gb|EEL85174.1| hypothetical protein bcere0029_50560 [Bacillus cereus AH1272]
 gi|228740735|gb|EEL90991.1| hypothetical protein bcere0030_50500 [Bacillus cereus AH1273]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|229158911|ref|ZP_04286968.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342]
 gi|228624522|gb|EEK81292.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|261368490|ref|ZP_05981373.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
 gi|282569479|gb|EFB75014.1| toxin-antitoxin system, antitoxin component, Xre family
          [Subdoligranulum variabile DSM 15176]
          Length = 153

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQ---SWISELETGKSTINIDNMIILAHTLDTPLWK 79
              R IR+   +TQ+E+  + G  +   + I++ E G  T   D +  +AH L+ P   
Sbjct: 4  GVKIRQIRQHRHMTQRELGEKIGLGKNGANRIAQYEMGYRTPKRDQLNKIAHALNVPEEM 63

Query: 80 L 80
          L
Sbjct: 64 L 64


>gi|159040395|ref|YP_001539648.1| XRE family transcriptional regulator [Salinispora arenicola
          CNS-205]
 gi|157919230|gb|ABW00658.1| transcriptional regulator, XRE family [Salinispora arenicola
          CNS-205]
          Length = 402

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT-PLWKLL 81
                +R+ A L+++ +    G + + +  +E G+ ++ +     LA  L    L  L 
Sbjct: 9  GQRVERLRRAAGLSRERLAGLAGLSATTVKFIENGRRSLTLRAAQQLAPHLGVRDLGDLF 68

Query: 82 KP 83
           P
Sbjct: 69 GP 70


>gi|50955215|ref|YP_062503.1| hypothetical protein Lxx16050 [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50951697|gb|AAT89398.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 103

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 34/64 (53%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R    +  R+ R +   T +++ ++   A  ++SE+E G+   + + +  +A  L+TP+ 
Sbjct: 5  RQEIGDVLRDFRLQKGRTLRQVASKASVALGYLSEVERGQKEASSEILASVADALETPVS 64

Query: 79 KLLK 82
           +++
Sbjct: 65 VIMR 68


>gi|206970068|ref|ZP_03231021.1| putative transcriptional regulator PlcR [Bacillus cereus AH1134]
 gi|228955599|ref|ZP_04117599.1| hypothetical protein bthur0006_49510 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|229112764|ref|ZP_04242296.1| hypothetical protein bcere0018_50020 [Bacillus cereus Rock1-15]
 gi|229181599|ref|ZP_04308924.1| hypothetical protein bcere0005_49380 [Bacillus cereus 172560W]
 gi|37650514|emb|CAE47446.1| PlcR protein [Bacillus thuringiensis serovar konkukian]
 gi|37650602|emb|CAE46798.1| PlcR protein [Bacillus thuringiensis]
 gi|37650606|emb|CAE46800.1| PlcR protein [Bacillus thuringiensis]
 gi|37650610|emb|CAE46802.1| PlcR protein [Bacillus thuringiensis]
 gi|37654142|emb|CAE46904.2| transcriptional regulator [Bacillus thuringiensis]
 gi|37904132|gb|AAO43573.1| transcriptional activator plcR [Bacillus thuringiensis serovar
          canadensis]
 gi|55419785|gb|AAV51963.1| PlcR [Bacillus thuringiensis serovar kurstaki]
 gi|206734645|gb|EDZ51814.1| putative transcriptional regulator PlcR [Bacillus cereus AH1134]
 gi|228601795|gb|EEK59291.1| hypothetical protein bcere0005_49380 [Bacillus cereus 172560W]
 gi|228670598|gb|EEL25910.1| hypothetical protein bcere0018_50020 [Bacillus cereus Rock1-15]
 gi|228804075|gb|EEM50694.1| hypothetical protein bthur0006_49510 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|65321312|ref|ZP_00394271.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis
          str. A2012]
          Length = 83

 Score = 44.6 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    RK    TQ+++       ++ IS  ETG +T  +D+ + +A  L+  ++ L 
Sbjct: 7  NLIKARKRKNFTQEQLGALINKQKTVISNWETGYATPTLDDAMQIAQILEEDIYNLF 63


>gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5]
 gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5]
          Length = 129

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          F    + +R   K+ Q+E+ +  G A++  +  E GK   + + ++ +A+  +  +  LL
Sbjct: 3  FSIRLKKLRDGKKMNQQEVADNLGIARTTYASYEQGKREPDHETLVKIANFFEVTVDYLL 62


>gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM
          5427]
 gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM
          5427]
          Length = 194

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               R++R E  LTQK++ +    +   +S+ E G    +I  +  L+  L   + K+L
Sbjct: 6  VGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLGCPDISLLPELSILLKVNIEKIL 65


>gi|291519985|emb|CBK75206.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4]
          Length = 122

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%)

Query: 18 ERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPL 77
          ++ I        R+   +T+ E   R   ++      E+G  T +I  + ++A    T +
Sbjct: 2  DKSIIPQRLAQARENLGITKAEASRRLNLSKIGYGRYESGDRTPSIQTLEVIAQCFGTSV 61

Query: 78 WKL 80
            L
Sbjct: 62 AYL 64


>gi|283832969|ref|ZP_06352710.1| transcriptional regulator, Cro/CI family [Citrobacter youngae
          ATCC 29220]
 gi|291071576|gb|EFE09685.1| transcriptional regulator, Cro/CI family [Citrobacter youngae
          ATCC 29220]
          Length = 200

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 26/62 (41%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 +  RK+ K++  E+  +   ++  + E+E  K+  +I  +  LA  +   +  
Sbjct: 20 EAVSQRIKQYRKQKKMSLDELSRQANVSKGMLVEIEGCKANPSIALLCRLAAAMGVSVAD 79

Query: 80 LL 81
           +
Sbjct: 80 FV 81


>gi|256957168|ref|ZP_05561339.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256947664|gb|EEU64296.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|315034185|gb|EFT46117.1| helix-turn-helix protein [Enterococcus faecalis TX0027]
          Length = 191

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLLK 82
             +N R+E   +Q+E+  +   ++  IS  E  +S  +I N+++L+   D  L +L+K
Sbjct: 5  KQIKNYREEFNFSQEELAKKLFVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDELVK 63


>gi|190889812|ref|YP_001976354.1| transcriptional regulator protein, Cro/CI family [Rhizobium etli
          CIAT 652]
 gi|218512245|ref|ZP_03509085.1| putative transcriptional regulator protein, Cro/CI family
          [Rhizobium etli 8C-3]
 gi|190695091|gb|ACE89176.1| putative transcriptional regulator protein, Cro/CI family
          [Rhizobium etli CIAT 652]
          Length = 122

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKL 80
          I  +N R +R   +++Q E+    G     I + E G + ++   +  +A  LD  +  L
Sbjct: 8  IVGHNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLDVEISVL 67

Query: 81 LK 82
           +
Sbjct: 68 FE 69


>gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum
          DJO10A]
 gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum
          DJO10A]
 gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 161

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
          M      + +R+E  LTQ +  +     Q  +S  E G +  +ID + +++   + P+ +
Sbjct: 1  MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60

Query: 80 LLK 82
          L++
Sbjct: 61 LME 63


>gi|73670452|ref|YP_306467.1| hypothetical protein Mbar_A2992 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397614|gb|AAZ71887.1| hypothetical protein Mbar_A2992 [Methanosarcina barkeri str.
          Fusaro]
          Length = 67

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          N    +RK+  + Q+E+      ++  I  LE G+   +I     LA   +T
Sbjct: 3  NRLEILRKQKGIKQEELAEALEVSRQTIGSLENGRYNPSIILAFKLARYFNT 54


>gi|30263987|ref|NP_846364.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Ames]
 gi|47529420|ref|YP_020769.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49186828|ref|YP_030080.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Sterne]
 gi|165872136|ref|ZP_02216775.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0488]
 gi|167633556|ref|ZP_02391880.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0442]
 gi|167640948|ref|ZP_02399205.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0193]
 gi|170688781|ref|ZP_02879985.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0465]
 gi|170705839|ref|ZP_02896302.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0389]
 gi|177654268|ref|ZP_02936197.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0174]
 gi|190565991|ref|ZP_03018910.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|217961396|ref|YP_002339964.1| prophage LambdaBa02, DNA-binding protein [Bacillus cereus AH187]
 gi|227816689|ref|YP_002816698.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          CDC 684]
 gi|229140642|ref|ZP_04269193.1| Prophage LambdaBa02, DNA-binding protein [Bacillus cereus
          BDRD-ST26]
 gi|229602019|ref|YP_002868218.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0248]
 gi|254683681|ref|ZP_05147541.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          CNEVA-9066]
 gi|254721518|ref|ZP_05183307.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A1055]
 gi|254736026|ref|ZP_05193732.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Western North America USA6153]
 gi|254743917|ref|ZP_05201600.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Kruger B]
 gi|254754304|ref|ZP_05206339.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Vollum]
 gi|254758005|ref|ZP_05210032.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Australia 94]
 gi|30258631|gb|AAP27850.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Ames]
 gi|47504568|gb|AAT33244.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49180755|gb|AAT56131.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          Sterne]
 gi|164712083|gb|EDR17621.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0488]
 gi|167510998|gb|EDR86387.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0193]
 gi|167530962|gb|EDR93649.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0442]
 gi|170129379|gb|EDS98243.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0389]
 gi|170667297|gb|EDT18056.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0465]
 gi|172080758|gb|EDT65839.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0174]
 gi|190562910|gb|EDV16876.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis
          Tsiankovskii-I]
 gi|217067707|gb|ACJ81957.1| prophage LambdaBa02, DNA-binding protein [Bacillus cereus AH187]
 gi|227004804|gb|ACP14547.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          CDC 684]
 gi|228642815|gb|EEK99095.1| Prophage LambdaBa02, DNA-binding protein [Bacillus cereus
          BDRD-ST26]
 gi|229266427|gb|ACQ48064.1| prophage LambdaBa02, DNA-binding protein [Bacillus anthracis str.
          A0248]
          Length = 75

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 25 NFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    RK    TQ+++       ++ IS  ETG +T  +D+ + +A  L+  ++ L 
Sbjct: 7  NLIKARKRKNFTQEQLGALINKQKTVISNWETGYATPTLDDAMQIAQILEEDIYNLF 63


>gi|15900927|ref|NP_345531.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae TIGR4]
 gi|237650284|ref|ZP_04524536.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae CCRI 1974]
 gi|237822126|ref|ZP_04597971.1| transcriptional regulator PlcR, putative [Streptococcus
          pneumoniae CCRI 1974M2]
 gi|14972531|gb|AAK75171.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae
          TIGR4]
          Length = 288

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 21 IFVNNFRNIRKEAKLTQKEIRNRTGF-AQSWISELETGKSTINIDNMIILAHTLDTPL 77
          +     +N RKE K++Q+E+    G   Q  IS LE+G+ T   D +  LA  L   +
Sbjct: 4  LLATRLKNRRKELKMSQRELAE--GICKQGQISRLESGEFTPGADFLHALAKKLKVSM 59


>gi|15924988|ref|NP_372522.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156980315|ref|YP_001442574.1| repressor-like protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|282919844|ref|ZP_06327576.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427]
 gi|14247771|dbj|BAB58160.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722450|dbj|BAF78867.1| repressor homolog [Staphylococcus aureus subsp. aureus Mu3]
 gi|282316482|gb|EFB46859.1| repressor-like protein [Staphylococcus aureus subsp. aureus C427]
          Length = 242

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
          F +  + I  E K++Q E+  RTG  ++ IS+   GK     D +  LA  L+ 
Sbjct: 8  FKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNV 61


>gi|330467550|ref|YP_004405293.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
 gi|328810521|gb|AEB44693.1| XRE family transcriptional regulator [Verrucosispora maris
          AB-18-032]
          Length = 379

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMII-LAHTLDTPLWKL 80
                 +R    ++Q+   +R G ++SW+ ++E G   ++  ++I  +A  L      L
Sbjct: 12 LGRRVAELRAHRGMSQQAFADRLGKSKSWVDKVERGVRRLDRYSVIRDIAEVLRLDPTML 71

Query: 81 LKP 83
          L P
Sbjct: 72 LGP 74


>gi|327191185|gb|EGE58228.1| putative transcriptional regulator protein [Rhizobium etli
          CNPAF512]
          Length = 125

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
          F    R +R    ++QKE+      + +++S LE GK      D +  +A   + 
Sbjct: 4  FGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58


>gi|323357088|ref|YP_004223484.1| transcriptional regulator [Microbacterium testaceum StLB037]
 gi|323273459|dbj|BAJ73604.1| predicted transcriptional regulator [Microbacterium testaceum
          StLB037]
          Length = 479

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query: 14 AILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTL 73
          A   E     +  R+ R    LT  E+    G A S +S +E GK    +  +  +A   
Sbjct: 2  ASSLELTTLGHRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARAT 61

Query: 74 DTPLWKLL 81
          +T + +LL
Sbjct: 62 ETEVTELL 69


>gi|255524012|ref|ZP_05390974.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296186870|ref|ZP_06855271.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
 gi|255512299|gb|EET88577.1| transcriptional regulator, XRE family [Clostridium
          carboxidivorans P7]
 gi|296048584|gb|EFG88017.1| helix-turn-helix domain-containing protein [Clostridium
          carboxidivorans P7]
          Length = 222

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDT 75
               +NIR    +TQK++  + G  +S+++E+E G+  IN + +  ++  L  
Sbjct: 4  VGEKIKNIRNSIGMTQKQLGKKLGVNESFVNEVENGRKIINQNLIDRISKVLGK 57


>gi|291302735|ref|YP_003514013.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
          DSM 44728]
 gi|290571955|gb|ADD44920.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
          DSM 44728]
          Length = 810

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETG-KSTINIDNMIILAHTLD 74
          F +  R  R  A  TQ+ +  R   +   I  LE G +       + +LA  L 
Sbjct: 5  FGHLLRRHRLAAGFTQESLAERAKLSSQAIGSLERGDRKRPYKYTVDVLADALG 58


>gi|229199476|ref|ZP_04326137.1| hypothetical protein bcere0001_49740 [Bacillus cereus m1293]
 gi|228583881|gb|EEK42038.1| hypothetical protein bcere0001_49740 [Bacillus cereus m1293]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
            +  + IR    LTQK++       QS +S +E+G    ++D +  +A  L  P+  
Sbjct: 6  LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIH 62


>gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82]
 gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
           +     RK+  +TQK++  + G +   +S+ E G    ++   + L   L   L + L
Sbjct: 7  GSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNEFL 65


>gi|218510909|ref|ZP_03508787.1| putative transcriptional regulator protein [Rhizobium etli Brasil
          5]
          Length = 157

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 6  RDEPHLSDAILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDN 65
          R       A     +      R  R  + L+Q E+  + G +   + + E+GK+ I+   
Sbjct: 19 RAGDDSEQASHPVDIHVGQQLRIRRVHSNLSQSELGQKVGLSYQQVQKYESGKNRISASM 78

Query: 66 MIILAHTLDTP 76
          +  +A  L+ P
Sbjct: 79 LYEIAGGLNVP 89


>gi|297203581|ref|ZP_06920978.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
 gi|197716044|gb|EDY60078.1| DNA-binding protein [Streptomyces sviceus ATCC 29083]
          Length = 274

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query: 26 FRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
           R  R++ +L+Q E+  R   +   IS +ETG+S  + + ++ LA  LD P+ +
Sbjct: 20 LRAWREQRRLSQLELALRADSSARHISFVETGRSRPSEEMVLRLAEHLDVPVRE 73


>gi|190889651|ref|YP_001976193.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
 gi|190694930|gb|ACE89015.1| putative transcriptional regulator protein [Rhizobium etli CIAT
          652]
          Length = 125

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKST-INIDNMIILAHTLDT 75
          F    R +R    ++QKE+      + +++S LE GK      D +  +A   + 
Sbjct: 4  FGEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNI 58


>gi|170694149|ref|ZP_02885304.1| helix-turn-helix domain protein [Burkholderia graminis C4D1M]
 gi|170140889|gb|EDT09062.1| helix-turn-helix domain protein [Burkholderia graminis C4D1M]
          Length = 79

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 20 MIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWK 79
                 R  RK  KLTQ  +  R     + +S +E  ++   +D ++ +A+ L   L +
Sbjct: 8  EALGKEIRARRKLKKLTQAGLALRANVHPNTVSLIERAETVARVDALLDIANALGAALSQ 67

Query: 80 LLK 82
          L+K
Sbjct: 68 LIK 70


>gi|167770329|ref|ZP_02442382.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM
          17241]
 gi|167667651|gb|EDS11781.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM
          17241]
          Length = 70

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
             RN+R++  L+QK++      +Q+  S+ E GK  I    +I LA    T +  LL
Sbjct: 3  ERIRNMREDKDLSQKDMAEILHVSQTTYSDYELGKINIPTQTLIKLASFHHTSIDYLL 60


>gi|161508087|ref|YP_001578054.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571]
 gi|160349076|gb|ABX27750.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571]
          Length = 289

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 15 ILRERMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLD 74
          I RE M      +  R +  LTQK+  +    + S+ S++E  +  I  +++I +    +
Sbjct: 3  IRRESMTIGELLKEERIKKGLTQKQFADSI-VSVSYYSKVEKNEHRITAEDLITILEHNN 61

Query: 75 TPLWKLLK 82
           PL    K
Sbjct: 62 IPLCSFFK 69


>gi|160880556|ref|YP_001559524.1| XRE family transcriptional regulator [Clostridium phytofermentans
          ISDg]
 gi|160429222|gb|ABX42785.1| transcriptional regulator, XRE family [Clostridium
          phytofermentans ISDg]
          Length = 66

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
          N    IRK   + Q+E+ N    ++  I  LE G+   +I     +A   +  +  + 
Sbjct: 3  NRLEEIRKLHGIKQEELANILEVSRQTIGSLENGRYNPSILLAFKIARYFNMRIEDIF 60


>gi|86559544|ref|YP_473365.1| putative LexA repressor [Clostridium perfringens CPE str. F4969]
 gi|168215112|ref|ZP_02640737.1| LexA repressor [Clostridium perfringens CPE str. F4969]
 gi|86475816|dbj|BAE78992.1| putative LexA repressor [Clostridium perfringens]
 gi|170713481|gb|EDT25663.1| LexA repressor [Clostridium perfringens CPE str. F4969]
          Length = 393

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 22 FVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLWKLL 81
               ++ RK+ K++Q++   +   A+S +S  E  KS   I  ++ ++  ++  + +LL
Sbjct: 10 LATTLKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELL 69


>gi|330466394|ref|YP_004404137.1| helix-turn-helix domain-containing protein [Verrucosispora maris
          AB-18-032]
 gi|328809365|gb|AEB43537.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032]
          Length = 150

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 19 RMIFVNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTPLW 78
          R +  +  R  R+    T +E+ +    +  ++SE+E G+   + + +  +   L   L 
Sbjct: 5  RRVIGDALRARRQGQHRTLREVSSAANVSLGYLSEIERGQKEPSSELLAAICDALGARLS 64

Query: 79 KLLK 82
          +LL+
Sbjct: 65 ELLR 68


>gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
 gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis
          F0405]
          Length = 228

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 24 NNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
             +  RKE K+TQK+I ++ G      S  E G    + + +  L   L+ P
Sbjct: 5  EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVP 57


>gi|308181771|ref|YP_003925899.1| XRE family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
 gi|308047262|gb|ADN99805.1| XRE family transcriptional regulator [Lactobacillus plantarum
          subsp. plantarum ST-III]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 23 VNNFRNIRKEAKLTQKEIRNRTGFAQSWISELETGKSTINIDNMIILAHTLDTP 76
              +  R E KLTQ ++  +    Q  ++  E GK T+ +  +  L+   D P
Sbjct: 6  GQRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVP 59


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.306    0.140    0.365 

Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,411,812,231
Number of Sequences: 14124377
Number of extensions: 42941538
Number of successful extensions: 180743
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 19647
Number of HSP's successfully gapped in prelim test: 3955
Number of HSP's that attempted gapping in prelim test: 159412
Number of HSP's gapped (non-prelim): 23897
length of query: 83
length of database: 4,842,793,630
effective HSP length: 54
effective length of query: 29
effective length of database: 4,080,077,272
effective search space: 118322240888
effective search space used: 118322240888
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 76 (33.8 bits)